Citrus Sinensis ID: 014104
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SV01 | 454 | F-box/WD-40 repeat-contai | yes | no | 0.988 | 0.936 | 0.564 | 1e-142 | |
| Q54KL5 | 335 | WD repeat-containing prot | no | no | 0.248 | 0.319 | 0.270 | 6e-07 | |
| O76734 | 579 | General transcriptional c | no | no | 0.348 | 0.259 | 0.260 | 3e-06 | |
| Q2H139 | 657 | Mitochondrial division pr | N/A | no | 0.367 | 0.240 | 0.255 | 4e-06 | |
| Q8YRI1 | 1526 | Uncharacterized WD repeat | yes | no | 0.565 | 0.159 | 0.219 | 9e-06 | |
| Q969H0 | 707 | F-box/WD repeat-containin | no | no | 0.539 | 0.328 | 0.227 | 1e-05 | |
| Q8N136 | 415 | Outer row dynein assembly | no | no | 0.525 | 0.544 | 0.247 | 2e-05 | |
| P90648 | 732 | Myosin heavy chain kinase | no | no | 0.225 | 0.132 | 0.320 | 2e-05 | |
| A7ETB3 | 667 | Mitochondrial division pr | N/A | no | 0.313 | 0.202 | 0.26 | 3e-05 | |
| Q8VBV4 | 629 | F-box/WD repeat-containin | no | no | 0.541 | 0.370 | 0.213 | 4e-05 |
| >sp|Q9SV01|FBW4_ARATH F-box/WD-40 repeat-containing protein At3g52030 OS=Arabidopsis thaliana GN=At3g52030 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/455 (56%), Positives = 320/455 (70%), Gaps = 30/455 (6%)
Query: 1 MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
M RT + S K R P +IESL+ DI+C+IFS L FDLV C+ VC SWNA+I R
Sbjct: 1 MGRTETGDESSARKMRRKVP-TSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKR 59
Query: 61 CKLLQLLYCKLHGFSNTSGSSM-------RLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
KLLQ K+H + S SS + +E+ AMKHH+ AL GRI+I++W+AHS
Sbjct: 60 LKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSH 119
Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLI--- 170
V QCRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+A+SL+DFDFDESK + ++
Sbjct: 120 RVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLA 179
Query: 171 ------------------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
GTRI IWRRNG RS+FPSR GTF KGLCMRY DPEAVVGCED
Sbjct: 180 WEYFDSVVVVVVEIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCED 239
Query: 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS 272
GTARVFDMYS+ CSQIIR P+T LSLS++QL +SGSSLG + +S DQ VATL+S
Sbjct: 240 GTARVFDMYSKTCSQIIRTQGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKS 299
Query: 273 T-DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331
T GI+T+C+N + L F GTT GY SCWDLR M LWE R+SPNVVYS+Q L+NDTS
Sbjct: 300 TITAGGIQTICFNQGTNLAFIGTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTS 359
Query: 332 TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391
+V GGIDGVLR++DQ +G VLSR +MD +++S+ VIE+ G+R+S ID+I
Sbjct: 360 VMVAGGIDGVLRMIDQKSGRVLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQDMEIDKI 419
Query: 392 PKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYS 426
+ +RP I+C+A+GMKK+VT HN K I +WKFN S
Sbjct: 420 ERKVRPQISCIAMGMKKMVTAHNGKCISVWKFNLS 454
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 202 FDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257
F+P++ V G D R++D+ + +C+++I H PVT + + D L++SGS G++
Sbjct: 138 FNPQSNLIVSGSFDENVRIWDVNTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVR 197
Query: 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK 308
I ++ Q + T+ + D + + ++P + V AGT W K
Sbjct: 198 IWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNTLRLWSYNNNK 248
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Dictyostelium discoideum (taxid: 44689) |
| >sp|O76734|TUP1_DICDI General transcriptional corepressor tupA OS=Dictyostelium discoideum GN=tupA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 11/161 (6%)
Query: 193 FMKGLCMRYFDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII 248
+++ +C F P+ G ED T +V+D++++K H + SL S D + I+
Sbjct: 329 YIRSVC---FSPDGNYLATGAEDKTVKVWDIHTKKIQHTFYGHELDIYSLDYSSDGRFIV 385
Query: 249 SGSSLGSIAISGLSSDQRVATLRSTDC---TGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305
SGS I + + TL + + G+ ++ +P RLV AG+ WD +
Sbjct: 386 SGSGDKKAKIWDIEKGKCAFTLGNEEVGPKNGVTSVAMSPDGRLVAAGSLDNIVRLWDAQ 445
Query: 306 TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346
T L + VYS+ D +L G +D L++ D
Sbjct: 446 TGYFLERYEGHLDSVYSVA-FSPDGKSLASGSLDKSLKLWD 485
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Acts as component of the trfA-tupA corepressor complex which is involved in the repression of many genes in a wide variety of physiological processes. May also be involved in the derepression of at least some target genes. The complex is recruited to target genes by interaction with DNA-bound transcriptional repressors. The complex recruits histone deacetylases to produce a repressive chromatin structure, interacts with hypoacetylated N-terminal tails of histones H3 and H4 that have been programmed for repression by the action of histone deacetylases and interferes directly with the transcriptional machinery by associating with the RNA polymerase II mediator complex. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q2H139|MDV1_CHAGB Mitochondrial division protein 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=MDV1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 109 KAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG 168
+AH + + ++++G DK +R W LE +CV+ + AA+
Sbjct: 434 EAHLDEITALHFRNNVLVSGSADKTLRQWDLEKGRCVQTLDVMWAAAQ----------AS 483
Query: 169 LIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228
+ T WR+ S P F+ L + F+ G DG R++D+ S + S+
Sbjct: 484 ALSTSDSTWRQT---SRAPDTAADFVGAL--QVFESALACGTADGMVRLWDLRSGQVSRS 538
Query: 229 IRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN 284
+ H PVT L +D +++GS SI I L + LR+T T I ++ ++
Sbjct: 539 LVGHTGPVTCLQF-DDVHLVTGSLDRSIRIWDLRTGSSTTPLRTT--TPITSMMFD 591
|
Involved in mitochondrial fission. Acts as an adapter protein required to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division. Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901) |
| >sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 125/278 (44%), Gaps = 35/278 (12%)
Query: 123 GLILTGVGDKVMRLW---------SLEGYKCVEEYSL--PNAASLVDFDFDESKIVGLIG 171
++ +G D+++RLW +L+GY + + PN +L + D+ + I
Sbjct: 1087 AMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDIS 1146
Query: 172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV---GCEDGTARVFDMYSRKCSQI 228
++ C++ G ++ + F P+ G D T R++D+ S KC I
Sbjct: 1147 SKKCLYTLQG--------HTNWVNAVA---FSPDGATLASGSGDQTVRLWDISSSKCLYI 1195
Query: 229 IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS 287
++ H + V S+ + D + SGSS ++ + ++S + + T + + + ++ +NP
Sbjct: 1196 LQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQG-HTSWVNSVVFNPDG 1254
Query: 288 RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347
++ +G++ WD+ + K L + N V S+ D S L G D +R+ +
Sbjct: 1255 SMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVA-FNPDGSMLASGSGDQTVRLWEI 1313
Query: 348 NTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAG 385
++ S+C+ +S VS V +G L++G
Sbjct: 1314 SS----SKCLHTFQGHTS---WVSSVTFSPDGTMLASG 1344
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Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q969H0|FBXW7_HUMAN F-box/WD repeat-containing protein 7 OS=Homo sapiens GN=FBXW7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 110 AHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL 169
H+ GV +M+ +I++G D+ +++W+ E +C+ ++L S V + + L
Sbjct: 419 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECI--HTLYGHTSTV-------RCMHL 469
Query: 170 IGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEAVVGCEDGTARVFDMY 221
R+ R+ V+ G + L C++Y V G D +V+D
Sbjct: 470 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 529
Query: 222 SRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTL 281
+ C ++ H V SL + ++SGS SI + + + + TL TG ++L
Sbjct: 530 TETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTL-----TGHQSL 583
Query: 282 C--YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYS-LQHLQNDTSTLVVGGI 338
++ +G WD++T + L +T PN S + LQ + + ++
Sbjct: 584 TSGMELKDNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKHQSAVTCLQFNKNFVITSSD 642
Query: 339 DGVLRVLDQNTGEVLSRCV 357
DG +++ D TGE + V
Sbjct: 643 DGTVKLWDLKTGEFIRNLV 661
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Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1. Homo sapiens (taxid: 9606) |
| >sp|Q8N136|WDR69_HUMAN Outer row dynein assembly protein 16 homolog OS=Homo sapiens GN=WDR69 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 99/234 (42%), Gaps = 8/234 (3%)
Query: 125 ILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD-ESKIV--GLIGTRICIWRRNG 181
I TG DK +LWS+E KC + + A +V F+ +S +V G + T +W
Sbjct: 150 IATGSFDKTCKLWSVETGKCYHTFR-GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQN 208
Query: 182 LRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240
V+ R + L + G D T V+D + + I+ HCA ++S S
Sbjct: 209 GEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSAS 268
Query: 241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299
+ D LI++GS + + ++ + VATL D I C++ +L+ + G A
Sbjct: 269 FNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHD-DEILDSCFDYTGKLIATASADGTA 327
Query: 300 SCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353
+ T K + + + + + L+ G D R+ D TG+ L
Sbjct: 328 RIFSAATRKCIAKLEGHEGEISKIS-FNPQGNHLLTGSSDKTARIWDAQTGQCL 380
|
May play a role in axonemal outer row dynein assembly. Homo sapiens (taxid: 9606) |
| >sp|P90648|MHCKB_DICDI Myosin heavy chain kinase B OS=Dictyostelium discoideum GN=mhkB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 208 VGCEDGTARVFDMYSR--KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ 265
GC D + RV+D S+ +C Q ++ H PV S+ + DQ + SGSS SI + L +
Sbjct: 475 TGCSDNSIRVYDYKSQNMECVQTLKGHEGPVESICYN-DQYLFSGSSDHSIKVWDLKKLR 533
Query: 266 RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK 308
+ TL D + T+ N + +F+G++ WDL+T++
Sbjct: 534 CIFTLEGHD-KPVHTVLLN--DKYLFSGSSDKTIKVWDLKTLE 573
|
Phosphorylates threonine in the C-terminal tail region of myosin II heavy chain. This phosphorylation is critical in regulating the assembly and disassembly of myosin II filament. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 7 |
| >sp|A7ETB3|MDV1_SCLS1 Mitochondrial division protein 1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=mdv1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 109 KAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG 168
+AH V + +++G DK +R W LE +CV+ + AA+ +
Sbjct: 441 EAHVDEVTALHFRGDTLISGSADKTLRQWDLEKGRCVQTLDVMWAAA---------QASA 491
Query: 169 LIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228
+G+ WR+ G P F+ ++ FD G DG R++D+ S + +
Sbjct: 492 TMGSTEGTWRQTGR---LPDATADFVG--AVQVFDAALACGTADGMVRLWDLRSGQVHRS 546
Query: 229 IRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258
+ H PVT L +D +++GS SI I
Sbjct: 547 LVGHTGPVTCLQF-DDVHLVTGSLDRSIRI 575
|
Involved in mitochondrial fission. Acts as an adapter protein required to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division. Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079) |
| >sp|Q8VBV4|FBXW7_MOUSE F-box/WD repeat-containing protein 7 OS=Mus musculus GN=Fbxw7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 108/258 (41%), Gaps = 25/258 (9%)
Query: 110 AHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL 169
H+ GV +M+ +I++G D+ +++W+ E +C+ ++L S V + + L
Sbjct: 341 GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECI--HTLYGHTSTV-------RCMHL 391
Query: 170 IGTRICIWRRNGLRSVFPSREGTFMKGL--------CMRYFDPEAVVGCEDGTARVFDMY 221
R+ R+ V+ G + L C++Y V G D +V+D
Sbjct: 392 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE 451
Query: 222 SRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTL 281
+ C ++ H V SL ++SGS SI + + + + TL TG ++L
Sbjct: 452 TETCLHTLQGHTNRVYSLQFDGIH-VVSGSLDTSIRVWDVETGNCIHTL-----TGHQSL 505
Query: 282 C--YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339
++ +G WD++T + L + ++ LQ + + ++ D
Sbjct: 506 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVITSSDD 565
Query: 340 GVLRVLDQNTGEVLSRCV 357
G +++ D TGE + V
Sbjct: 566 GTVKLWDLKTGEFIRNLV 583
|
Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins. Involved in the degradation of cyclin-E, MYC, NOTCH1 released notch intracellular domain (NICD), and probably PSEN1. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 224106143 | 444 | predicted protein [Populus trichocarpa] | 0.967 | 0.936 | 0.718 | 1e-171 | |
| 297736340 | 435 | unnamed protein product [Vitis vinifera] | 0.979 | 0.967 | 0.693 | 1e-170 | |
| 359487426 | 421 | PREDICTED: F-box/WD-40 repeat-containing | 0.937 | 0.957 | 0.708 | 1e-167 | |
| 147777206 | 471 | hypothetical protein VITISV_013775 [Viti | 0.979 | 0.893 | 0.635 | 1e-162 | |
| 334185911 | 433 | F-box/WD-40 repeat-containing protein [A | 0.988 | 0.981 | 0.601 | 1e-147 | |
| 356539142 | 444 | PREDICTED: F-box/WD-40 repeat-containing | 0.974 | 0.943 | 0.612 | 1e-146 | |
| 449436339 | 433 | PREDICTED: F-box/WD-40 repeat-containing | 0.962 | 0.956 | 0.587 | 1e-141 | |
| 297816474 | 447 | F-box family protein [Arabidopsis lyrata | 0.960 | 0.923 | 0.572 | 1e-141 | |
| 357458443 | 438 | F-box/WD-40 repeat-containing protein [M | 0.981 | 0.963 | 0.591 | 1e-141 | |
| 22331742 | 454 | F-box/WD-40 repeat-containing protein [A | 0.988 | 0.936 | 0.564 | 1e-140 |
| >gi|224106143|ref|XP_002314059.1| predicted protein [Populus trichocarpa] gi|222850467|gb|EEE88014.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 312/434 (71%), Positives = 352/434 (81%), Gaps = 18/434 (4%)
Query: 7 SRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQL 66
S+RSPP KKRSS +I SL D +C+IFS LG FD+VR SAVCK WN II R KLLQL
Sbjct: 7 SKRSPP-KKRSSTTPTSIRSLEHDALCIIFSYLGLFDVVRSSAVCKFWNEIIKRSKLLQL 65
Query: 67 LYC---KLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG 123
LY + S+ S S+ ++LEELA++H R +L +G + IDQWK HS+GVDQCRMKRG
Sbjct: 66 LYLKQQRRSSRSDFSEESLNVYLEELAIEHQRQSLVQGSLHIDQWKGHSLGVDQCRMKRG 125
Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK-------------IVGLI 170
L+LTGVGDKVMRLWSLE YKC+EEYS+P+ LVDFDFDESK IVGL+
Sbjct: 126 LVLTGVGDKVMRLWSLESYKCIEEYSIPDGVPLVDFDFDESKAVVPYIDIVHRIVIVGLV 185
Query: 171 GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR 230
GTRICIWRRNG RS+FPSREG FMKG CMRYFDPEAVVGCEDGTARVFDMYS+KCS+I+R
Sbjct: 186 GTRICIWRRNGQRSIFPSREGQFMKGSCMRYFDPEAVVGCEDGTARVFDMYSKKCSRIVR 245
Query: 231 MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLV 290
MH PVT LSLSEDQLIISGSSLG I ISGLSSDQRVATLR TD TGIK+LC+NP S V
Sbjct: 246 MHTEPVTCLSLSEDQLIISGSSLGRITISGLSSDQRVATLRPTDSTGIKSLCFNPVSHQV 305
Query: 291 FAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350
FAGTTAGYASCWDLRTM+ LW+TR+SPNVVYSLQH+++DTSTLVVGGIDGVLRVLDQNTG
Sbjct: 306 FAGTTAGYASCWDLRTMRQLWKTRVSPNVVYSLQHMRSDTSTLVVGGIDGVLRVLDQNTG 365
Query: 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVV 410
EVLS VMD G+ S+SS GVIER G+RL IDRIPKT+RPPITCLAVGM+KV+
Sbjct: 366 EVLSSYVMDHGT-STSSGYTHGVIERKIGKRLPYDYNIDRIPKTVRPPITCLAVGMQKVI 424
Query: 411 TTHNSKYIRLWKFN 424
TTHN K IR+WKFN
Sbjct: 425 TTHNIKNIRMWKFN 438
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736340|emb|CBI24978.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 299/431 (69%), Positives = 347/431 (80%), Gaps = 10/431 (2%)
Query: 1 MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
M+ T + +S K+ SS+ AT SL DI+CMIF L FDLVRCSAVCKSWN +IN+
Sbjct: 1 MDGTTADGQSQAQKRMSSRVPAT--SLAHDILCMIFVLLDLFDLVRCSAVCKSWNKVINK 58
Query: 61 CKLLQLLYCKLHG-------FSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
KLLQ+LY K G S+ S +++ +E+LAM+HHR +L+ G IDI+QWK HSV
Sbjct: 59 SKLLQILYHKQQGGSIGPSSTSHCSEKPLKVCIEQLAMEHHRLSLQ-GLIDIEQWKGHSV 117
Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTR 173
QCRMK GLILTGVGDK +RLWSLE YKC+EE+ LPN A LVDFDFDE+KIVGLIGTR
Sbjct: 118 RAGQCRMKMGLILTGVGDKAVRLWSLESYKCLEEHFLPNLAPLVDFDFDENKIVGLIGTR 177
Query: 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC 233
IC WRRNG RS+FPSREGTFMKGLCMRY DPEAVVGCEDGTARVFDMYSRKCS+IIRMH
Sbjct: 178 ICTWRRNGKRSIFPSREGTFMKGLCMRYIDPEAVVGCEDGTARVFDMYSRKCSRIIRMHS 237
Query: 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG 293
PV L+LS+DQ IISGSSLGSI ISGLSSDQR+A LRSTD TGI+TLC+NP S LVF+G
Sbjct: 238 GPVRCLALSDDQCIISGSSLGSITISGLSSDQRIAKLRSTDSTGIRTLCFNPRSHLVFSG 297
Query: 294 TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353
+TAGYASCWDLRTM+ LWE RISPNV+YS+QHL +DT TLV GGIDGVLR+LDQNTG+V+
Sbjct: 298 STAGYASCWDLRTMRPLWENRISPNVIYSMQHLCSDTHTLVAGGIDGVLRILDQNTGKVV 357
Query: 354 SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTH 413
S CVMD A +SS K +IER +GRR++ ID IPK+ RPPITCLAVGM+KVVTTH
Sbjct: 358 SGCVMDDSPAPTSSQKTDSIIERKKGRRITEDTLIDSIPKSSRPPITCLAVGMQKVVTTH 417
Query: 414 NSKYIRLWKFN 424
N KYIR+WKF+
Sbjct: 418 NGKYIRMWKFH 428
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487426|ref|XP_002271688.2| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 292/412 (70%), Positives = 335/412 (81%), Gaps = 9/412 (2%)
Query: 21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHG------- 73
R SL DI+CMIF L FDLVRCSAVCKSWN +IN+ KLLQ+LY K G
Sbjct: 4 RVPATSLAHDILCMIFVLLDLFDLVRCSAVCKSWNKVINKSKLLQILYHKQQGGSIGPSS 63
Query: 74 FSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKV 133
S+ S +++ +E+LAM+HHR +L+ G IDI+QWK HSV QCRMK GLILTGVGDK
Sbjct: 64 TSHCSEKPLKVCIEQLAMEHHRLSLQ-GLIDIEQWKGHSVRAGQCRMKMGLILTGVGDKA 122
Query: 134 MRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTF 193
+RLWSLE YKC+EE+ LPN A LVDFDFDE+KIVGLIGTRIC WRRNG RS+FPSREGTF
Sbjct: 123 VRLWSLESYKCLEEHFLPNLAPLVDFDFDENKIVGLIGTRICTWRRNGKRSIFPSREGTF 182
Query: 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSL 253
MKGLCMRY DPEAVVGCEDGTARVFDMYSRKCS+IIRMH PV L+LS+DQ IISGSSL
Sbjct: 183 MKGLCMRYIDPEAVVGCEDGTARVFDMYSRKCSRIIRMHSGPVRCLALSDDQCIISGSSL 242
Query: 254 GSIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE 312
GSI ISGLSSDQR+A LRSTD T GI+TLC+NP S LVF+G+TAGYASCWDLRTM+ LWE
Sbjct: 243 GSITISGLSSDQRIAKLRSTDSTGGIRTLCFNPRSHLVFSGSTAGYASCWDLRTMRPLWE 302
Query: 313 TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372
RISPNV+YS+QHL +DT TLV GGIDGVLR+LDQNTG+V+S CVMD A +SS K
Sbjct: 303 NRISPNVIYSMQHLCSDTHTLVAGGIDGVLRILDQNTGKVVSGCVMDDSPAPTSSQKTDS 362
Query: 373 VIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFN 424
+IER +GRR++ ID IPK+ RPPITCLAVGM+KVVTTHN KYIR+WKF+
Sbjct: 363 IIERKKGRRITEDTLIDSIPKSSRPPITCLAVGMQKVVTTHNGKYIRMWKFH 414
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147777206|emb|CAN61154.1| hypothetical protein VITISV_013775 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 297/467 (63%), Positives = 345/467 (73%), Gaps = 46/467 (9%)
Query: 1 MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
M+ T + +S K+ SS+ AT SL DI+CMIF L FDLVRCSAVCKSWN +IN+
Sbjct: 1 MDGTTADGQSQAQKRMSSRVPAT--SLAHDILCMIFVLLDLFDLVRCSAVCKSWNKVINK 58
Query: 61 CKLLQLLYCKLHG-------FSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
KLLQ+LY K G S+ S +++ +E+LAM+HHR +L+ G IDI+QWK HSV
Sbjct: 59 SKLLQILYHKQQGGSIGPSSTSHCSEKPLKVCIEQLAMEHHRLSLQ-GLIDIEQWKGHSV 117
Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTR 173
QCRMK GLILTGVGDK +RLWSLE YKC+EE+ LPN A LVDFDFDE+KIVGLIGTR
Sbjct: 118 RAGQCRMKMGLILTGVGDKAVRLWSLESYKCLEEHFLPNLAPLVDFDFDENKIVGLIGTR 177
Query: 174 ICIWRRNGLRSVFPSREGTFMKGLCMR--------------------------------- 200
IC WRRNG RS+FPS EGTFMKGLCMR
Sbjct: 178 ICXWRRNGKRSIFPSXEGTFMKGLCMRNAVVXSVSENGVWSLGEWEGHTVLGSCIEMVVV 237
Query: 201 --YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258
Y DPEAVVGCEDGTARVFDMYSRKCS+IIRMH PV L+LS+DQ IISGSSLGSI I
Sbjct: 238 RCYIDPEAVVGCEDGTARVFDMYSRKCSRIIRMHSGPVRCLALSDDQCIISGSSLGSITI 297
Query: 259 SGLSSDQRVATLRSTDCTG-IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
SGLSSDQR+A LRSTD TG I+TLC+NP S LVF+G+TAGYASCWDLRTM+ LWE RISP
Sbjct: 298 SGLSSDQRIAKLRSTDSTGGIRTLCFNPRSHLVFSGSTAGYASCWDLRTMRPLWENRISP 357
Query: 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERN 377
N +YS+QHL +DT TLV GGIDGVLR+LDQNTG+V+S CVMD A +SS K +IER
Sbjct: 358 NXIYSMQHLCSDTHTLVAGGIDGVLRILDQNTGKVVSGCVMDDSPAPTSSQKTDSIIERK 417
Query: 378 EGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFN 424
+GRR++ ID IPK+ RPPITCLAVGM+KVVTTHN KYIR+WKF+
Sbjct: 418 KGRRITEDTLIDSIPKSSRPPITCLAVGMQKVVTTHNGKYIRMWKFH 464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334185911|ref|NP_001190063.1| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|332645356|gb|AEE78877.1| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/434 (60%), Positives = 322/434 (74%), Gaps = 9/434 (2%)
Query: 1 MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
M RT + S K R P +IESL+ DI+C+IFS L FDLV C+ VC SWNA+I R
Sbjct: 1 MGRTETGDESSARKMRRKVP-TSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKR 59
Query: 61 CKLLQLLYCKLHGFSNTSGSSM-------RLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
KLLQ K+H + S SS + +E+ AMKHH+ AL GRI+I++W+AHS
Sbjct: 60 LKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSH 119
Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTR 173
V QCRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+A+SL+DFDFDESKIVGL+GTR
Sbjct: 120 RVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKIVGLVGTR 179
Query: 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC 233
I IWRRNG RS+FPSR GTF KGLCMRY DPEAVVGCEDGTARVFDMYS+ CSQIIR
Sbjct: 180 ISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKTCSQIIRTQG 239
Query: 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST-DCTGIKTLCYNPCSRLVFA 292
P+T LSLS++QL +SGSSLG + +S DQ VATL+ST GI+T+C+N + L F
Sbjct: 240 GPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFI 299
Query: 293 GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352
GTT GY SCWDLR M LWE R+SPNVVYS+Q L+NDTS +V GGIDGVLR++DQ +G V
Sbjct: 300 GTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSGRV 359
Query: 353 LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTT 412
LSR +MD +++S+ VIE+ G+R+S ID+I + +RP I+C+A+GMKK+VT
Sbjct: 360 LSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQDMEIDKIERKVRPQISCIAMGMKKMVTA 419
Query: 413 HNSKYIRLWKFNYS 426
HN K I +WKFN S
Sbjct: 420 HNGKCISVWKFNLS 433
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539142|ref|XP_003538059.1| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/431 (61%), Positives = 318/431 (73%), Gaps = 12/431 (2%)
Query: 4 TRSSRRSPPP-------KKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNA 56
T +++R P P KKR P TI SL+ DI+ IF+ L FDLVRCS VCK WNA
Sbjct: 11 TAAAKRGPSPPSSDQIKKKRRETP-TTILSLDPDIVTTIFAFLDMFDLVRCSLVCKLWNA 69
Query: 57 IINRCKLLQLLYCKLH-GFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGV 115
I+ L + K+H F+ + +R+ L E+AM+ H AL+ G +DQWKAHS V
Sbjct: 70 IVESRSLREFCERKMHKSFAEFTKKPLRVILGEVAMEQHSLALQCGGFYVDQWKAHSTTV 129
Query: 116 DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRIC 175
QCRMK G+++TGVG KV+RLWSL+ YKC+EEYS+P+ SLVDFDFDESKIVGLIG+ +C
Sbjct: 130 AQCRMKMGMLVTGVGHKVIRLWSLDSYKCIEEYSMPDMFSLVDFDFDESKIVGLIGSHLC 189
Query: 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235
IWRRNG RS+FPS EG F+KG CMRYFDPEAVVGC+DG RVFDMYSRKCSQIIRMH AP
Sbjct: 190 IWRRNGKRSIFPSLEGKFVKGSCMRYFDPEAVVGCDDGAVRVFDMYSRKCSQIIRMHYAP 249
Query: 236 VTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295
+T L LSEDQLI+SGS+ GSI +S SS Q+VATLRS+D GI+TLC+NP S+L+FAG+
Sbjct: 250 ITCLCLSEDQLIMSGSTSGSITMSDPSSVQQVATLRSSDARGIRTLCFNPSSQLLFAGSA 309
Query: 296 AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355
GYA CWDLRT K LW R+SPNV+YSLQH+ +DTSTL VGGIDG+LR+L+QN G V+S
Sbjct: 310 VGYAYCWDLRTRKLLWSNRVSPNVIYSLQHMHSDTSTLAVGGIDGILRLLNQNDGSVVSS 369
Query: 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCC--IDRIPKTIRPPITCLAVGMKKVVTTH 413
CVM S+ SG I+R +G RL ID IPKT RP ITCLAVGMKK+VTTH
Sbjct: 370 CVMG-DKLLSTFQSPSGSIQRRKGSRLPENIYINIDLIPKTARPSITCLAVGMKKIVTTH 428
Query: 414 NSKYIRLWKFN 424
N+ IRLWKF
Sbjct: 429 NTNDIRLWKFK 439
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436339|ref|XP_004135950.1| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Cucumis sativus] gi|449488809|ref|XP_004158178.1| PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 254/432 (58%), Positives = 312/432 (72%), Gaps = 18/432 (4%)
Query: 10 SPPP-------KKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCK 62
+PPP ++RS + SL+ DI+C+IFS L FDLVRC VCKSWN I + +
Sbjct: 2 TPPPTADRSSARRRSDVDAKPVHSLSHDILCIIFSFLDLFDLVRCLGVCKSWNYAIYKSE 61
Query: 63 LLQLLYCKLHGFSNTSGSSMRLH----------LEELAMKHHRFALEEGRIDIDQWKAHS 112
+L+ + S S+ + LEE+AM+ H+ ALE+GRI + QW HS
Sbjct: 62 ILRTFCLRYQKQEMNSASTSEVSFSLEKPLLECLEEIAMERHKLALEKGRIRVSQWIGHS 121
Query: 113 VGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGT 172
V V+QCRMK GLILTGVGDKVMRLWS E ++C+EEYS+P LVDFDFD KIVGLIG
Sbjct: 122 VRVEQCRMKMGLILTGVGDKVMRLWSPENFRCLEEYSVPEKMPLVDFDFDVGKIVGLIGR 181
Query: 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH 232
++CIW R+G RS+FPSRE TF KGLCMRYFD EAVVGCEDGTA VFDMYSR+CS+IIRM
Sbjct: 182 QLCIWSRSGKRSIFPSRECTFEKGLCMRYFDAEAVVGCEDGTAHVFDMYSRRCSRIIRML 241
Query: 233 CAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFA 292
PVT L +++DQL+ GS LG+I +SG+ SDQRV LRS + GI+TLCYN SRLVFA
Sbjct: 242 PGPVTCLCVNDDQLMFGGSLLGNIGVSGVRSDQRVVMLRSRNTVGIRTLCYNASSRLVFA 301
Query: 293 GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352
G+TAG+ CWDLRTMKSLWE+R+SPNV+YSLQHLQND S+L VGGIDG+LR+LDQNTG V
Sbjct: 302 GSTAGHVYCWDLRTMKSLWESRVSPNVIYSLQHLQNDRSSLAVGGIDGILRILDQNTGTV 361
Query: 353 LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTT 412
S C+MD S+ + + G++E G+RLS ID I + RP IT LAVGM K+VTT
Sbjct: 362 QSCCMMDSRLLSTHQDGL-GIVEERRGKRLSDETPIDTIDRRNRPSITSLAVGMNKIVTT 420
Query: 413 HNSKYIRLWKFN 424
HN K+I+LWKF
Sbjct: 421 HNDKFIKLWKFQ 432
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816474|ref|XP_002876120.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297321958|gb|EFH52379.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 254/444 (57%), Positives = 317/444 (71%), Gaps = 31/444 (6%)
Query: 5 RSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLL 64
R +RR P +IESL+ DI+C+IFS L FDLV C+ VC SW+A+I + KLL
Sbjct: 13 RKTRRRISP---------SIESLDADILCIIFSFLDLFDLVHCTVVCNSWHAVIKKLKLL 63
Query: 65 QLLYCKLHGFSNTSGSS-------MRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQ 117
Q K+H + SS + +E+ AMKHH+ AL GRI+I++W+AHS V Q
Sbjct: 64 QASCRKMHHLGSDFPSSSTSLDGPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSNRVSQ 123
Query: 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE-------------- 163
CRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+AASL+DFDFDE
Sbjct: 124 CRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDAASLIDFDFDEKTSVESLIWISETT 183
Query: 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR 223
S IVGL+GTRI IWRRNG RS+FPSREGTF KGLCMRY DPEAVVGCEDGTARVFDMYS+
Sbjct: 184 SIIVGLVGTRISIWRRNGQRSIFPSREGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSK 243
Query: 224 KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST-DCTGIKTLC 282
CSQIIR P+T LSLSE+Q+ +SGSSLG + +S DQ VATL+ST GI+T+C
Sbjct: 244 TCSQIIRTQGGPITCLSLSENQVFLSGSSLGRVTVSDPLLDQPVATLKSTITAGGIQTIC 303
Query: 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342
+N + L F GTT GY SCWDLR M LWE R+SPNVVYS+Q L+NDTS +V GGIDGVL
Sbjct: 304 FNQGTNLAFTGTTGGYVSCWDLRKMGRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVL 363
Query: 343 RVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCL 402
RV+DQN+G VLSR +M+ +++ VIE+ G+R+S +D+I + +RP I+C+
Sbjct: 364 RVIDQNSGRVLSRFIMEDKVSTTLRRDNQVVIEKRRGKRVSQDMEMDKIERKVRPQISCI 423
Query: 403 AVGMKKVVTTHNSKYIRLWKFNYS 426
A+GMKK+VT HN K I +W+FN S
Sbjct: 424 AMGMKKIVTAHNGKCISVWRFNLS 447
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357458443|ref|XP_003599502.1| F-box/WD-40 repeat-containing protein [Medicago truncatula] gi|355488550|gb|AES69753.1| F-box/WD-40 repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/431 (59%), Positives = 314/431 (72%), Gaps = 9/431 (2%)
Query: 1 MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
M T ++ + KR +TI SL+GDI+ +IF+ L FDLVRCS VCK WN I+
Sbjct: 1 MHPTSATASTDHKNKRLCNTPSTILSLDGDILSIIFAFLNMFDLVRCSLVCKFWNEILES 60
Query: 61 CKLLQLLYCKLHGFSNTSGS------SMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVG 114
L KL +++S S S+R+ L ++AM+ HR AL+ GR +DQWK HS
Sbjct: 61 RSLRVFYERKLRNDASSSRSFEHTKKSLRMILRDVAMEQHRLALQCGRFHVDQWKGHSTT 120
Query: 115 VDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRI 174
+ QCRMK G ++TGVGDKV+RLWSL+ YKCVEEYS+P+ SLVDFDFDESKIVGLIG+
Sbjct: 121 ISQCRMKMGTLVTGVGDKVIRLWSLDRYKCVEEYSIPDTLSLVDFDFDESKIVGLIGSHF 180
Query: 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA 234
CIWRRNG RSVFPS EG F+KG CMRYFDPEA+VGC+DG+ RVFDMYSR+CSQIIRMH A
Sbjct: 181 CIWRRNGKRSVFPSLEGKFIKGSCMRYFDPEAMVGCDDGSVRVFDMYSRRCSQIIRMHSA 240
Query: 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294
P+T L LSEDQLI+SGS+ G+I I+ SS Q+VATLRS+D GIKTLC P S+L+FAG+
Sbjct: 241 PITCLCLSEDQLILSGSTSGNITIADPSSVQKVATLRSSDFRGIKTLCLKPSSQLLFAGS 300
Query: 295 TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS 354
GY CWD+RT K LW TR+SPNVV SLQH++ND STL VGGIDG+LR L+QN G ++S
Sbjct: 301 AVGYTYCWDMRTRKLLWNTRVSPNVVSSLQHMRNDKSTLAVGGIDGILRFLNQNDGNIVS 360
Query: 355 RCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC--IDRIPKTIRPPITCLAVGMKKVVTT 412
C+ + S+ G I+R +G+RL ID IP+ RP ITCLAVGMKKVVTT
Sbjct: 361 SCIAE-DRLLSTYQSHPGSIQRRKGKRLPEDTYINIDAIPRNSRPSITCLAVGMKKVVTT 419
Query: 413 HNSKYIRLWKF 423
HN++ IRLWKF
Sbjct: 420 HNTRDIRLWKF 430
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331742|ref|NP_190771.2| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|160332332|sp|Q9SV01.2|FBW4_ARATH RecName: Full=F-box/WD-40 repeat-containing protein At3g52030 gi|332645355|gb|AEE78876.1| F-box/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/455 (56%), Positives = 320/455 (70%), Gaps = 30/455 (6%)
Query: 1 MERTRSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR 60
M RT + S K R P +IESL+ DI+C+IFS L FDLV C+ VC SWNA+I R
Sbjct: 1 MGRTETGDESSARKMRRKVP-TSIESLDADILCIIFSFLDLFDLVHCTVVCNSWNAVIKR 59
Query: 61 CKLLQLLYCKLHGFSNTSGSSM-------RLHLEELAMKHHRFALEEGRIDIDQWKAHSV 113
KLLQ K+H + S SS + +E+ AMKHH+ AL GRI+I++W+AHS
Sbjct: 60 LKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSH 119
Query: 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLI--- 170
V QCRMK+GL+LTGVGDKVMRLWSL+ YKC+EEYSLP+A+SL+DFDFDESK + ++
Sbjct: 120 RVSQCRMKKGLLLTGVGDKVMRLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLA 179
Query: 171 ------------------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED 212
GTRI IWRRNG RS+FPSR GTF KGLCMRY DPEAVVGCED
Sbjct: 180 WEYFDSVVVVVVEIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCED 239
Query: 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS 272
GTARVFDMYS+ CSQIIR P+T LSLS++QL +SGSSLG + +S DQ VATL+S
Sbjct: 240 GTARVFDMYSKTCSQIIRTQGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKS 299
Query: 273 T-DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331
T GI+T+C+N + L F GTT GY SCWDLR M LWE R+SPNVVYS+Q L+NDTS
Sbjct: 300 TITAGGIQTICFNQGTNLAFIGTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTS 359
Query: 332 TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391
+V GGIDGVLR++DQ +G VLSR +MD +++S+ VIE+ G+R+S ID+I
Sbjct: 360 VMVAGGIDGVLRMIDQKSGRVLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQDMEIDKI 419
Query: 392 PKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYS 426
+ +RP I+C+A+GMKK+VT HN K I +WKFN S
Sbjct: 420 ERKVRPQISCIAMGMKKMVTAHNGKCISVWKFNLS 454
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| TAIR|locus:2083735 | 454 | AT3G52030 "AT3G52030" [Arabido | 0.609 | 0.577 | 0.585 | 3.4e-128 | |
| ZFIN|ZDB-GENE-050522-303 | 455 | fbxw2 "F-box and WD repeat dom | 0.448 | 0.424 | 0.272 | 6.1e-07 | |
| UNIPROTKB|Q58D00 | 454 | FBXW2 "F-box/WD repeat-contain | 0.451 | 0.427 | 0.25 | 1e-05 | |
| UNIPROTKB|E2R6D8 | 454 | FBXW2 "Uncharacterized protein | 0.451 | 0.427 | 0.25 | 1.3e-05 | |
| UNIPROTKB|Q9UKT8 | 454 | FBXW2 "F-box/WD repeat-contain | 0.451 | 0.427 | 0.25 | 1.3e-05 | |
| UNIPROTKB|Q8N136 | 415 | WDR69 "Outer row dynein assemb | 0.523 | 0.542 | 0.238 | 2.4e-05 | |
| RGD|1310460 | 454 | Fbxw2 "F-box and WD repeat dom | 0.451 | 0.427 | 0.245 | 2.8e-05 | |
| MGI|MGI:1353435 | 422 | Fbxw2 "F-box and WD-40 domain | 0.451 | 0.459 | 0.245 | 3.2e-05 | |
| UNIPROTKB|Q5ZK75 | 454 | FBXW2 "Uncharacterized protein | 0.451 | 0.427 | 0.230 | 0.00013 | |
| TAIR|locus:2150788 | 839 | AT5G08390 "AT5G08390" [Arabido | 0.416 | 0.213 | 0.229 | 0.00031 |
| TAIR|locus:2083735 AT3G52030 "AT3G52030" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 804 (288.1 bits), Expect = 3.4e-128, Sum P(2) = 3.4e-128
Identities = 154/263 (58%), Positives = 185/263 (70%)
Query: 165 KIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224
+IVGL+GTRI IWRRNG RS+FPSR GTF KGLCMRY DPEAVVGCEDGTARVFDMYS+
Sbjct: 192 EIVGLVGTRISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKT 251
Query: 225 CSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXXXXXXXXXDQRVATLRST-DCTGIKTLCY 283
CSQIIR P+T LSLS++Q DQ VATL+ST GI+T+C+
Sbjct: 252 CSQIIRTQGGPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICF 311
Query: 284 NPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLR 343
N + L F GTT GY SCWDLR M LWE R+SPNVVYS+Q L+NDTS +V GGIDGVLR
Sbjct: 312 NQGTNLAFIGTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLR 371
Query: 344 VLDQNTGEVLSRCVMDIGXXXXXXNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403
++DQ +G VLSR +MD VIE+ G+R+S ID+I + +RP I+C+A
Sbjct: 372 MIDQKSGRVLSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQDMEIDKIERKVRPQISCIA 431
Query: 404 VGMKKVVTTHNSKYIRLWKFNYS 426
+GMKK+VT HN K I +WKFN S
Sbjct: 432 MGMKKMVTAHNGKCISVWKFNLS 454
|
|
| ZFIN|ZDB-GENE-050522-303 fbxw2 "F-box and WD repeat domain containing 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 144 (55.7 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 58/213 (27%), Positives = 88/213 (41%)
Query: 44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS-NTSGSSMR----LHLE-ELAMKHHRFA 97
L+ C VCK WN +IN C + C+ G+ + S R ++L+ +L MK R
Sbjct: 77 LLTCCLVCKQWNKVINGCTEVWQSVCRDLGWRIDESIQDARHWKVIYLKAKLRMKQLR-- 134
Query: 98 LEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLV 157
EE + HS V + GL+ TG D +LW + +CV A++
Sbjct: 135 -EEDAFETSSLIGHSARVYALYYRDGLLCTGSDDLSAKLWDVRTGQCVYGIQTHTCATV- 192
Query: 158 DFDFDESKIV-GLIGTRICIWR-RNGLR-SVFPSREGTFMKGLCMRYFDP-EAVV-GCED 212
FDE K+V G I W G + F G + Y D + +V G D
Sbjct: 193 --KFDEQKLVTGSFDNTIACWEWSTGAKIQQFRGHTGAVFS---IDYNDELDTLVSGSAD 247
Query: 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQ 245
T +V+ + + C + H VT + L + Q
Sbjct: 248 FTVKVWSLSAGTCVNTLTGHTEWVTKVHLQKSQ 280
|
|
| UNIPROTKB|Q58D00 FBXW2 "F-box/WD repeat-containing protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 52/208 (25%), Positives = 83/208 (39%)
Query: 44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
L+ C V K WN +I+ C + CK G+ LH +++ +K LE+
Sbjct: 77 LLTCCLVSKQWNKVISACTEVWQTACKSLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136
Query: 102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
+ HS V K GL+ TG D +LW + +CV A++
Sbjct: 137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193
Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
FDE K+V G + W +G R+ F G + Y D ++ G D T
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYNDELDILVSGSADFTV 250
Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
+V+ + + C + H VT + L +
Sbjct: 251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278
|
|
| UNIPROTKB|E2R6D8 FBXW2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 52/208 (25%), Positives = 83/208 (39%)
Query: 44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
L+ C V K WN +I+ C + CK G+ LH +++ +K LE+
Sbjct: 77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136
Query: 102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
+ HS V K GL+ TG D +LW + +CV A++
Sbjct: 137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193
Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
FDE K+V G + W +G R+ F G + Y D ++ G D T
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYNDELDILVSGSADFTV 250
Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
+V+ + + C + H VT + L +
Sbjct: 251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278
|
|
| UNIPROTKB|Q9UKT8 FBXW2 "F-box/WD repeat-containing protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 52/208 (25%), Positives = 83/208 (39%)
Query: 44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
L+ C V K WN +I+ C + CK G+ LH +++ +K LE+
Sbjct: 77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136
Query: 102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
+ HS V K GL+ TG D +LW + +CV A++
Sbjct: 137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193
Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
FDE K+V G + W +G R+ F G + Y D ++ G D T
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYNDELDILVSGSADFTV 250
Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
+V+ + + C + H VT + L +
Sbjct: 251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278
|
|
| UNIPROTKB|Q8N136 WDR69 "Outer row dynein assembly protein 16 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 56/235 (23%), Positives = 93/235 (39%)
Query: 125 ILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD-ESKIV--GLIGTRICIWR-RN 180
I TG DK +LWS+E KC + + A +V F+ +S +V G + T +W +N
Sbjct: 150 IATGSFDKTCKLWSVETGKCYHTFR-GHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQN 208
Query: 181 GLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239
G V+ R + L + G D T V+D + + I+ HCA ++S
Sbjct: 209 G-EEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSA 267
Query: 240 SLSEDQXXXXXXXXXXXXXXXXXXDQR-VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY 298
S + D + + VATL D I C++ +L+ + G
Sbjct: 268 SFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHD-DEILDSCFDYTGKLIATASADGT 326
Query: 299 ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353
A + T K + + + + + L+ G D R+ D TG+ L
Sbjct: 327 ARIFSAATRKCIAKLEGHEGEISKIS-FNPQGNHLLTGSSDKTARIWDAQTGQCL 380
|
|
| RGD|1310460 Fbxw2 "F-box and WD repeat domain containing 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 129 (50.5 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 51/208 (24%), Positives = 82/208 (39%)
Query: 44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
L+ C V K WN +I+ C + CK G+ LH +++ +K LE+
Sbjct: 77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDALHWKKVYLKAILRMKQLEDH 136
Query: 102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
+ HS V K GL+ TG D +LW + +CV A++
Sbjct: 137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193
Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
FDE K+V G + W +G R+ F G + Y D ++ G D
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYSDELDILVSGSADFAV 250
Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
+V+ + + C + H VT + L +
Sbjct: 251 KVWALSAGTCLNTLTGHTEWVTKVVLQQ 278
|
|
| MGI|MGI:1353435 Fbxw2 "F-box and WD-40 domain protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 51/208 (24%), Positives = 82/208 (39%)
Query: 44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKH--HRFALEEG 101
L+ C V K WN +I+ C + CK G+ LH +++ +K LE+
Sbjct: 77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDSLHWKKVYLKAILRMKQLEDH 136
Query: 102 R-IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
+ HS V K GL+ TG D +LW + +CV A++
Sbjct: 137 EAFETSSLIGHSARVYALYYKDGLLCTGSDDLSAKLWDVSTGQCVYGIQTHTCAAV---K 193
Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
FDE K+V G + W +G R+ F G + Y D ++ G D
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGARTQHFRGHTGAVFS---VDYSDELDILVSGSADFAV 250
Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
+V+ + + C + H VT + L +
Sbjct: 251 KVWALSAGTCLNTLTGHTEWVTKVVLQK 278
|
|
| UNIPROTKB|Q5ZK75 FBXW2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 48/208 (23%), Positives = 82/208 (39%)
Query: 44 LVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMK---HHRFALEE 100
L+ C V K WN +I+ C + CK G+ LH +++ +K + +
Sbjct: 77 LLTCCLVSKQWNKVISACTEVWQTACKNLGWQIDDSVQDPLHWKKVYLKAILRMKQLKDH 136
Query: 101 GRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD 160
+ HS V + GL+ TG D +LW + +C+ A++
Sbjct: 137 EAFETSSLIGHSARVYALYYRDGLLCTGSDDLSAKLWDVSTGQCIYGIQTHTCATV---K 193
Query: 161 FDESKIV-GLIGTRICIWR-RNGLRSV-FPSREGTFMKGLCMRYFDPEAVV--GCEDGTA 215
FDE K+V G + W +G ++ F G + Y D V+ G D T
Sbjct: 194 FDEQKLVTGSFDNTVACWEWSSGAKTQHFRGHTGAVFS---VDYNDELDVLVSGSADFTV 250
Query: 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
+V+ + + C + H VT + L +
Sbjct: 251 KVWALSTGTCLNTLTGHTEWVTKVVLQK 278
|
|
| TAIR|locus:2150788 AT5G08390 "AT5G08390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 123 (48.4 bits), Expect = 0.00031, P = 0.00031
Identities = 44/192 (22%), Positives = 71/192 (36%)
Query: 111 HSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGYKCVEEYS--LPNAASLVDFDFDESKI 166
HS G+D GL+ G ++LW LE K V + N S+ F E
Sbjct: 58 HSSGIDSVTFDASEGLVAAGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFA 117
Query: 167 VGLIGTRICIW--RRNGLRSVFPSREGTFMKGLCMRYFDPEA---VVGCEDGTARVFDMY 221
G + T + IW R+ G + +G+ + F P+ V G ED +V+D+
Sbjct: 118 SGSLDTNLKIWDIRKKGCIHTYKGHT----RGVNVLRFTPDGRWIVSGGEDNVVKVWDLT 173
Query: 222 SRKCSQIIRMHCAPVTSLSLSEDQXXXXXXXXXXXXXXXXXXDQRVATLRSTDCTGIKTL 281
+ K + H + SL + + T+ TG++ L
Sbjct: 174 AGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLETFELIGSGGTETTGVRCL 233
Query: 282 CYNPCSRLVFAG 293
+NP + V G
Sbjct: 234 TFNPDGKSVLCG 245
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SV01 | FBW4_ARATH | No assigned EC number | 0.5648 | 0.9883 | 0.9361 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-09 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 8e-07 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 5e-06 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 5e-06 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 5e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 71/337 (21%), Positives = 124/337 (36%), Gaps = 68/337 (20%)
Query: 105 IDQWKAHSVGVDQCR--MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD 162
K H+ GV L+ TG GD +++W LE +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL------------------ 43
Query: 163 ESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS 222
+ G G +R V S +GT++ G D T R++D+ +
Sbjct: 44 LRTLKGHTG---------PVRDVAASADGTYL------------ASGSSDKTIRLWDLET 82
Query: 223 RKCSQIIRMHCAPVTSLSLSEDQLIISGSSL-GSIAISGLSSDQRVATLRSTDCTGIKTL 281
+C + + H + V+S++ S D I+S SS +I + + + + + TLR + ++
Sbjct: 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW-VNSV 141
Query: 282 CYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341
++P V + + G WDLRT K + V S+ D L+ DG
Sbjct: 142 AFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA-FSPDGEKLLSSSSDGT 200
Query: 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID-----------R 390
+++ D +TG+ L N V+ V + L A D
Sbjct: 201 IKLWDLSTGKCLGTLR-------GHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGE 252
Query: 391 IPKTIR---PPITCLAV--GMKKVVTTHNSKYIRLWK 422
+T+ +T LA K++ + IR+W
Sbjct: 253 CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (137), Expect = 7e-09
Identities = 54/244 (22%), Positives = 97/244 (39%), Gaps = 13/244 (5%)
Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTR----ICIWRR 179
L+ + D ++LW L + ++ S+ F + G+ I +W
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185
Query: 180 NGLRSVFPSREGTFMKGLCMRYFDPE----AVVGCEDGTARVFDMYSRKC-SQIIRMHCA 234
+ + T + F P+ G DGT R++D+ + K + H
Sbjct: 186 RTGKPLSTLAGHT--DPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243
Query: 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294
V S + L+ SGSS G+I + L S + S + + ++ ++P +L+ +G+
Sbjct: 244 SVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303
Query: 295 TAGYASCWDLRTMKSLWETRI--SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352
+ G WDL T K L + V SL + + + G DG +R+ D TG+
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP 363
Query: 353 LSRC 356
L
Sbjct: 364 LKTL 367
|
Length = 466 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 8e-07
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 30 DIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQ 65
+I+ I S L DL+R V + W ++I+
Sbjct: 4 EILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWF 39
|
Length = 41 |
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 5e-06
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC 69
++ L D++ I S L DL+R S V K W ++++ KL +
Sbjct: 2 SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48
|
This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48 |
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 5e-06
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 30 DIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKL 63
+I+ IFS L DL+R + VC+ W + + L
Sbjct: 7 EILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40
|
This is an F-box-like family. Length = 47 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 287 SRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346
++ T G D T K LW +S ++ + +VV DG L LD
Sbjct: 34 GGRLYVATGKGELVALDAATGKLLWRKDLSGEILGAPTVAGG---VVVVVTADGSLYALD 90
Query: 347 QNTGEVL 353
TG++L
Sbjct: 91 AETGKLL 97
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.98 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.98 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| PTZ00420 | 568 | coronin; Provisional | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.94 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.88 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.88 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.87 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.86 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.86 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.86 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.84 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.82 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.82 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.81 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.81 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.8 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.8 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.79 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.79 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.79 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.78 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.77 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.76 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.75 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.75 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.75 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.75 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.74 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.74 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.73 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.73 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.71 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.71 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.71 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.7 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.7 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.7 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.65 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.65 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.65 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.65 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.64 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.63 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.62 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.62 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.62 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.6 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.59 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.59 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.59 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.59 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.59 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.55 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.53 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.53 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.51 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.51 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.48 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.47 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.47 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.46 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.45 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.45 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.43 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.43 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.42 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.41 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.4 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.39 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.38 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.36 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.36 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 99.36 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.35 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.35 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.35 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.34 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.34 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.34 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.33 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.32 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.28 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.25 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.2 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.2 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.2 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.19 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.18 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.18 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.17 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.17 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.16 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.16 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.14 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.13 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.13 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.12 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 99.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.11 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.1 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.06 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.06 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.05 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.04 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.02 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.02 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.99 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.97 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.95 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.95 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.94 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.94 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.93 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.91 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.9 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.84 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.84 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.84 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.83 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.82 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.82 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.78 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.76 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.73 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.7 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.7 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.7 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.67 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.67 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.66 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.64 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.6 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.59 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.59 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.59 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.58 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.58 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.57 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.57 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.5 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.49 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.45 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.44 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.43 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.42 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.4 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.38 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.36 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.32 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.32 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.31 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.3 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.28 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.23 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.21 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.18 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.1 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.1 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.07 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.03 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.02 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.0 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.99 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.98 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.97 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.95 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.9 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 97.9 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.89 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.87 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.87 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.85 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.81 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.77 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.76 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.74 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.71 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.69 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.67 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.64 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.62 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.61 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.61 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.6 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.5 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.48 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.45 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.43 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.43 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.35 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.31 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.3 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.25 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.23 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.21 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.21 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.19 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.13 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.12 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.11 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.1 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.08 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.07 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.06 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.05 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.04 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.97 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.93 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.91 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.84 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 96.79 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.78 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.72 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.72 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.7 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.68 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.64 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.44 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.42 | |
| KOG3926 | 332 | consensus F-box proteins [Amino acid transport and | 96.38 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.26 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.22 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.21 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.2 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 96.1 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.03 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.03 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.95 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.89 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.75 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.74 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 95.5 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.49 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.39 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.17 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.1 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.07 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.55 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.42 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 94.28 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.22 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 94.14 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.08 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 94.06 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.99 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 93.97 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.56 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.29 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.05 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 92.99 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 92.97 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.86 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 92.82 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 92.79 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.74 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 92.63 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 92.58 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 91.81 | |
| PF06881 | 109 | Elongin_A: RNA polymerase II transcription factor | 91.6 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.58 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 91.41 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 90.85 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.34 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 89.91 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.41 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 89.33 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 89.07 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 88.84 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.65 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 88.45 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 88.09 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 87.7 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 87.61 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 87.37 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 87.19 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 87.14 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 86.79 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 86.58 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 86.38 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 86.24 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.83 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 85.76 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 85.67 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 85.58 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 85.38 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 85.16 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 85.08 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 84.71 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 84.34 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 84.34 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 84.0 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 83.95 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 83.21 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 82.95 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 82.79 | |
| PF12341 | 27 | DUF3639: Protein of unknown function (DUF3639) ; I | 82.76 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 82.72 | |
| KOG4408 | 386 | consensus Putative Mg2+ and Co2+ transporter CorD | 82.21 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 82.07 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 81.24 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 81.21 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 80.93 | |
| PRK10115 | 686 | protease 2; Provisional | 80.84 | |
| PLN02153 | 341 | epithiospecifier protein | 80.38 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 80.33 | |
| PLN02193 | 470 | nitrile-specifier protein | 80.12 |
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=347.53 Aligned_cols=371 Identities=21% Similarity=0.309 Sum_probs=305.4
Q ss_pred CCCCccCCc----HHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCCC----------CC--------
Q 014104 20 PRATIESLN----GDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS----------NT-------- 77 (430)
Q Consensus 20 ~~~~~~~Lp----~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~----------~~-------- 77 (430)
-.+|++.|| +++.+.||+|||..+|+.|..|||.|+.+..+..+|+.|+.+....- ++
T Consensus 71 qrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie~~vr~dslWrgl~e~rqw~~~lf~~r 150 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIERMVRTDSLWRGLSERRQWDQYLFKNR 150 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHHHhcchHHHHhhhhhccCcchhhccCC
Confidence 358999999 99999999999999999999999999999999999999998775211 11
Q ss_pred --------CCCchHHHHHHHH-cccchhhcccCCEeEEEEec---cccceeEEEecCCeEEEEeCCCeEEEEecCCCeeE
Q 014104 78 --------SGSSMRLHLEELA-MKHHRFALEEGRIDIDQWKA---HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCV 145 (430)
Q Consensus 78 --------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~---h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 145 (430)
...+...|-.-+. ......+|..|...+.++.. ..+.|+|+.++|+.+++|..|.+|+|||.++.+++
T Consensus 151 ~~~~~~~~n~f~~~l~pki~~di~~idsNWr~Gr~~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~ 230 (499)
T KOG0281|consen 151 PNDGGFPPNSFYRLLYPKIIQDIETIESNWRCGRHLLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECL 230 (499)
T ss_pred CCcCCcCCCcchhhhhHHHHHHHhhhhcchhccceeeeeecCCcccCCceEEEEecchhhhcccccCceEEeccccHHHH
Confidence 0011111111111 12235789999999998875 45789999999999999999999999999999999
Q ss_pred EeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe
Q 014104 146 EEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 224 (430)
+.+.+| ...++++..+.+.++ |++|.+|++||+++++.+- ..-+|...++.+.+....+++++.|.++.+||+.+..
T Consensus 231 ~~L~GH-tGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~-tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 231 KILTGH-TGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLN-TLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPT 308 (499)
T ss_pred HhhhcC-CCcEEeeeccceEEEecCCCceEEEEeccCCchhh-HHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCch
Confidence 888886 445677778888888 9999999999999998542 2223334567788888899999999999999998764
Q ss_pred ---eeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 014104 225 ---CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASC 301 (430)
Q Consensus 225 ---~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 301 (430)
+.+.+.+|...|+.+.|+ +.++++++.|.+|++|++.+++.++++.+ |..+|-|+.+ .|+++++|+.|.+|++
T Consensus 309 ~it~rrVLvGHrAaVNvVdfd-~kyIVsASgDRTikvW~~st~efvRtl~g-HkRGIAClQY--r~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDFD-DKYIVSASGDRTIKVWSTSTCEFVRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIRL 384 (499)
T ss_pred HHHHHHHHhhhhhheeeeccc-cceEEEecCCceEEEEeccceeeehhhhc-ccccceehhc--cCeEEEecCCCceEEE
Confidence 345677999999999995 45999999999999999999999999998 8889999988 7899999999999999
Q ss_pred EeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 302 WDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 302 ~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
||+..|.++..+++|..-|.++. | |.+.+++|+.||+|++||+.++..-+....
T Consensus 385 wdi~~G~cLRvLeGHEeLvRciR-F--d~krIVSGaYDGkikvWdl~aaldpra~~~----------------------- 438 (499)
T KOG0281|consen 385 WDIECGACLRVLEGHEELVRCIR-F--DNKRIVSGAYDGKIKVWDLQAALDPRAPAS----------------------- 438 (499)
T ss_pred EeccccHHHHHHhchHHhhhhee-e--cCceeeeccccceEEEEecccccCCccccc-----------------------
Confidence 99999999999999999999998 6 678999999999999999986643322211
Q ss_pred ccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..++.. ...|++.|..+.||...+++++.|.+|.|||+..+
T Consensus 439 ---~~Cl~~-lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 439 ---TLCLRT-LVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ---chHHHh-hhhccceeEEEeecceEEEeccCCCeEEEEEcCCC
Confidence 011111 13578899999999999999999999999999765
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=335.59 Aligned_cols=314 Identities=18% Similarity=0.223 Sum_probs=272.0
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
.+-..+.||.++|.|+.| |++ .|+||+.|.++|+||+.+..+..+.++| +-+.+++|+|||+.|+ ++.+|+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 355678999999999999 556 9999999999999999999999999988 5688899999999999 99999999999
Q ss_pred cCCCcccccCCCCceeeeeEEEEc--C-----CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEe
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYF--D-----PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGS 251 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 251 (430)
.+++++.-....+|...+.++++. + ..+++++.||+|+|||+..++++..+.+|+.+|+|+.|--..++++|+
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS 265 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGS 265 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecC
Confidence 999987666555555444554432 1 239999999999999999999999999999999999997668999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe-----------cCCC-------------------------EEEEEeC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN-----------PCSR-------------------------LVFAGTT 295 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-----------~~~~-------------------------~l~~~~~ 295 (430)
.|++|++|+...|.+.+.+++ |...|+.++.+ |.++ .|++|+.
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkG-HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKG-HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCceEEEEEccchhHHHhhcc-cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999998 88899988876 3333 4999999
Q ss_pred CCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc----------e
Q 014104 296 AGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA----------S 364 (430)
Q Consensus 296 dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~ 364 (430)
|.++.+|+... .+++....+|...|+.+. ||||+++++++|.|..|++||-++|+.+.+|.+|-+.+ .
T Consensus 345 d~tlflW~p~~~kkpi~rmtgHq~lVn~V~-fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRL 423 (480)
T KOG0271|consen 345 DFTLFLWNPFKSKKPITRMTGHQALVNHVS-FSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRL 423 (480)
T ss_pred CceEEEecccccccchhhhhchhhheeeEE-ECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccE
Confidence 99999999764 568889999999999999 99999999999999999999999999999999988766 4
Q ss_pred eeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEE
Q 014104 365 SSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~ 422 (430)
++++|.|.++++|++.... +..-..+|.+.|.++.| ||.++++|+.|..+++|.
T Consensus 424 lVS~SkDsTLKvw~V~tkK----l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 424 LVSGSKDSTLKVWDVRTKK----LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEcCCCceEEEEEeeeee----ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 5666667777777665432 33334679999999999 799999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=281.20 Aligned_cols=281 Identities=20% Similarity=0.237 Sum_probs=246.4
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
..++|+||.+.|.++.|. |. +++++|.||.+.|||.-+...++-++.+ .-+...+|+|.++.++ ++.|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 347899999999999994 44 9999999999999999988888888876 4467799999999999 899999999999
Q ss_pred CCC--c---ccccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-C-CEEEEEe
Q 014104 180 NGL--R---SVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGS 251 (430)
Q Consensus 180 ~~~--~---~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~ 251 (430)
.+. + .+.....+|.....|..+.+ ..|++++.|.+..+||+++++.+..+.+|.+.|.+++++| + +.+++|+
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 865 2 23334455555555555544 3499999999999999999999999999999999999998 4 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC--CCceEEEEEeeCC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS--PNVVYSLQHLQND 329 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~s~~ 329 (430)
-|+..++||++.+.++++|.+ |+..|.+++|.|+|.-+++|+.|++.++||++..+.+..+... ..+|++++ ||..
T Consensus 207 cD~~aklWD~R~~~c~qtF~g-hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~-FS~S 284 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEG-HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVA-FSKS 284 (343)
T ss_pred cccceeeeeccCcceeEeecc-cccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEE-Eccc
Confidence 999999999999999999998 8999999999999999999999999999999999888777633 26899999 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
|++|++|..|..+.+||.-.++.+..+.+|.+ .|+|+.. ||.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN------------------------------------RvScl~~s~DG~ 328 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN------------------------------------RVSCLGVSPDGM 328 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEeeccCC------------------------------------eeEEEEECCCCc
Confidence 99999999999999999999999998877555 7777666 677
Q ss_pred EEEEeeCCCeEEEEE
Q 014104 408 KVVTTHNSKYIRLWK 422 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~ 422 (430)
.++|||.|..+|||.
T Consensus 329 av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 AVATGSWDSTLRIWA 343 (343)
T ss_pred EEEecchhHheeecC
Confidence 799999999999994
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=304.21 Aligned_cols=275 Identities=15% Similarity=0.241 Sum_probs=247.6
Q ss_pred eccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecC--CCEEE-EEeCCeEEEEEcCCC
Q 014104 109 KAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFD--ESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 109 ~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~-~~~~~~i~vwd~~~~ 182 (430)
-|-+.+|..+.|+ ++ .|+|||.+|.+++|+..+...+.++.+| ..+..+.|+|. +..++ ++.||++++|++++.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 3567889999994 44 9999999999999999999999999998 55677999996 45677 899999999999987
Q ss_pred ccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEE
Q 014104 183 RSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vw 259 (430)
..+ +..|. ..+..+.+.+.+..|++++.|.+-++||+++++.+...++|...|.+++|+++ .++++|+.|..-+||
T Consensus 252 ~~l~~l~gH~-~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 252 TPLQDLEGHL-ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred cchhhhhcch-hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 643 44444 34456788888999999999999999999999999999999999999999976 899999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC-CCCeEEEEcC
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN-DTSTLVVGGI 338 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~ 338 (430)
|+++|+++..+.+ |..+|.+|+|+|+|..||+|+.|++++|||++..+++..+.+|.+-|+.+. |+| .|.+|+|++.
T Consensus 331 DlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk-~~p~~g~fL~Tasy 408 (459)
T KOG0272|consen 331 DLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVK-YSPQEGYFLVTASY 408 (459)
T ss_pred ecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheE-ecccCCeEEEEccc
Confidence 9999999999998 999999999999999999999999999999999999999999999999999 888 7889999999
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
|++++||...++.+++++.+|.+ .|.++++ |+.+++|++.|.
T Consensus 409 D~t~kiWs~~~~~~~ksLaGHe~------------------------------------kV~s~Dis~d~~~i~t~s~DR 452 (459)
T KOG0272|consen 409 DNTVKIWSTRTWSPLKSLAGHEG------------------------------------KVISLDISPDSQAIATSSFDR 452 (459)
T ss_pred CcceeeecCCCcccchhhcCCcc------------------------------------ceEEEEeccCCceEEEeccCc
Confidence 99999999999999999977555 7777777 688899999999
Q ss_pred eEEEEE
Q 014104 417 YIRLWK 422 (430)
Q Consensus 417 ~v~vw~ 422 (430)
++|+|.
T Consensus 453 T~KLW~ 458 (459)
T KOG0272|consen 453 TIKLWR 458 (459)
T ss_pred eeeecc
Confidence 999995
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=322.25 Aligned_cols=367 Identities=20% Similarity=0.285 Sum_probs=306.0
Q ss_pred CCCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCCCCC---------C---CCchHHH
Q 014104 18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNT---------S---GSSMRLH 85 (430)
Q Consensus 18 ~~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~~~---------~---~~~~~~~ 85 (430)
...++|+..||.|+..+||+||++++|.++++||+.|+.+++++..|.+.+.+......+ . ..++++.
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~ 181 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSF 181 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhh
Confidence 347899999999999999999999999999999999999999999999888887644332 1 1344444
Q ss_pred HHHHHcccchhhcccCCEe-EEEEec-cccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEe-eecC-CceeEEEEec
Q 014104 86 LEELAMKHHRFALEEGRID-IDQWKA-HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEE-YSLP-NAASLVDFDF 161 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~l~~-h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~~~~~~~~~~ 161 (430)
+..- ......|.....+ .+.+.+ |...+.+..+.++++++++.|++|++||..++..+.. +.+| +.+..+++..
T Consensus 182 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~ 259 (537)
T KOG0274|consen 182 YRRR--FRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS 259 (537)
T ss_pred hhhh--hhccccccccccccceeecccCcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec
Confidence 3221 1112333333332 344454 5667888888989999999999999999999998888 8887 5567788877
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 240 (430)
-+..++ ++.|.++++||..+++.+.... ++...+.++...+..+++|+.|.+|++|++++++++..+.+|.++|.++.
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~ 338 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ 338 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence 677777 8889999999999998643333 44455677777777799999999999999999999999999999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCc
Q 014104 241 LSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-KSLWETRISPNV 319 (430)
Q Consensus 241 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~ 319 (430)
.+ +.++++|+.|++|++||+.+++++.++.+ |...|+++.+.+. ..+++|+.|++|++||+++. +++..+.+|.+.
T Consensus 339 ~~-~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~ 415 (537)
T KOG0274|consen 339 LD-EPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL 415 (537)
T ss_pred ec-CCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc
Confidence 97 77999999999999999999999999999 9999999988654 89999999999999999999 999999999998
Q ss_pred eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCe
Q 014104 320 VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPI 399 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v 399 (430)
+.++. ..+++|++++.|++|++||..++++++++..+ |...|
T Consensus 416 v~~l~---~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-----------------------------------~~~~v 457 (537)
T KOG0274|consen 416 VSSLL---LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-----------------------------------HVGGV 457 (537)
T ss_pred ccccc---cccceeEeccccccEEEeecccCceeeeeccC-----------------------------------CcccE
Confidence 87776 46789999999999999999999999999762 23477
Q ss_pred eEEEEcCeEEEEeeCCCeEEEEEecCCCc
Q 014104 400 TCLAVGMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 400 ~~v~~~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
+++++....+++++.||++++||+.+++.
T Consensus 458 ~~l~~~~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 458 SALALGKEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred EEeecCcceEEEEecCCeeEEEecccCch
Confidence 77777777799999999999999998764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=264.40 Aligned_cols=266 Identities=17% Similarity=0.281 Sum_probs=231.8
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc----cccCCCCceeeeeE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRS----VFPSREGTFMKGLC 198 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~----~~~~~~~~~~~~~~ 198 (430)
+|+|+|.|.+||+|...+|.+..++.++ ..+..+.+.|+++.|+++....|++||++++.. .+..+.+. +..+.
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kN-VtaVg 90 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKN-VTAVG 90 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCc-eEEEE
Confidence 8999999999999999999999999986 567889999999999999999999999998764 34444444 45677
Q ss_pred EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
|..++..+++|++||+++|||++...+.+.++ |.++|+++..+|+ ..|++|..+|.|++||+.+..+...+.......
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 88888889999999999999999977777776 7799999999998 689999999999999999887777776546679
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCC------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC-
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTM------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG- 350 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~- 350 (430)
|.++.+.|+|.+|+.+...|..++|++-+. +++..++.|.+.+.... +||++++|+++|.|.+++||++++.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~-lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCL-LSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEE-ECCCCcEEEeecCCceEEEEecCCce
Confidence 999999999999999999999999998753 45667889999999998 9999999999999999999999876
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
+....+ .+|+..++..+| |++||+||+.|+.+++|++..+++
T Consensus 249 kle~~l------------------------------------~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~ 292 (311)
T KOG0315|consen 249 KLELVL------------------------------------TGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE 292 (311)
T ss_pred eeEEEe------------------------------------ecCCceEEeeeeccCccEEEecCCCCceeecccccCce
Confidence 333333 346668998888 699999999999999999999875
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=283.42 Aligned_cols=284 Identities=18% Similarity=0.193 Sum_probs=244.9
Q ss_pred HHcccchhhcccCCE-------------eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeE-EeeecC-
Q 014104 89 LAMKHHRFALEEGRI-------------DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-EEYSLP- 151 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~-------------~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-~~~~~~- 151 (430)
.+|.+.+..+..|.. +..+++||...|.|+++ ||| .||+|+.||+|++||.++|+++ ..+.+|
T Consensus 121 ~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~ 200 (480)
T KOG0271|consen 121 VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHK 200 (480)
T ss_pred EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcc
Confidence 455666666666654 57789999999999999 677 9999999999999999988766 556666
Q ss_pred CceeEEEEec-----CCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCe
Q 014104 152 NAASLVDFDF-----DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 152 ~~~~~~~~~~-----~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~ 224 (430)
..+..++|.| ..++|+ ++.||.++|||+..+..++ ...+|...+.|+...+.. +++|+.|++|++|+...|.
T Consensus 201 K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~-~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~ 279 (480)
T KOG0271|consen 201 KWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR-TLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGK 279 (480)
T ss_pred cceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE-EeccCccceEEEEEcCCceEEecCCCceEEEEEccchh
Confidence 4567788766 456777 8889999999999877543 233455567888887655 9999999999999999999
Q ss_pred eeEEeecCCCCeEEEEecC------------C-------------------------CEEEEEeCCCeEEEEeCCC-Cce
Q 014104 225 CSQIIRMHCAPVTSLSLSE------------D-------------------------QLIISGSSLGSIAISGLSS-DQR 266 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~------------~-------------------------~~l~~~~~dg~i~vwd~~~-~~~ 266 (430)
+.+++++|...|+.++.+. + +.+++|++|.++.+|+... .++
T Consensus 280 ~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp 359 (480)
T KOG0271|consen 280 LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP 359 (480)
T ss_pred HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc
Confidence 9999999999999998861 1 2499999999999999764 446
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 267 VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 267 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+..+.+ |..-|..+.|+||++++|+++-|..|++||.++|+.+..+++|-+.|+.++ |+.|.++|++||.|.++++||
T Consensus 360 i~rmtg-Hq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva-wsaDsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 360 ITRMTG-HQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA-WSADSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred hhhhhc-hhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE-eccCccEEEEcCCCceEEEEE
Confidence 777777 888999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred cCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 347 QNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
+++.++...+.+|.+.++.+-.++||...
T Consensus 438 V~tkKl~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 438 VRTKKLKQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred eeeeeecccCCCCCceEEEEEecCCCcee
Confidence 99999999999999999999999999753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=277.32 Aligned_cols=290 Identities=14% Similarity=0.159 Sum_probs=257.0
Q ss_pred hhcccCCEeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeC
Q 014104 96 FALEEGRIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIG 171 (430)
Q Consensus 96 ~~~~~~~~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~ 171 (430)
..|.+...+.+.+.||..+|+.+.|. +. .+++++.|++|++||..++++...+++| +.+..++|+..|++++ ++.|
T Consensus 92 ~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 92 ALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSD 171 (406)
T ss_pred hhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCc
Confidence 34666677888999999999999994 44 8889999999999999999999999987 5566799999999999 7777
Q ss_pred CeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE
Q 014104 172 TRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII 248 (430)
Q Consensus 172 ~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (430)
-.+.+||.++.... ......+.+..+++.+.+..+++++.|.+|+.|++.++.++.++.+|...|..++.+.+ .+++
T Consensus 172 l~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred cchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence 77999999885432 23334556777888889989999999999999999999999999999999999999954 8999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC---------------CCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC---------------SRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
+++.|.++++|-+.++++...+.. |+-+|.+++|-|. ++++++++.|++|++||+.++.++.++
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR~-hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELRE-HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhhc-cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 999999999999999988888887 8889999999762 258999999999999999999999999
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCC
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
.+|...|.+++ |+|.|+||+++..|+++++||++++++..++..|.
T Consensus 331 ~ghdnwVr~~a-f~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~--------------------------------- 376 (406)
T KOG0295|consen 331 VGHDNWVRGVA-FSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHE--------------------------------- 376 (406)
T ss_pred ecccceeeeeE-EcCCCeEEEEEecCCcEEEEEeccceeeeccCCCc---------------------------------
Confidence 99999999999 99999999999999999999999999999987644
Q ss_pred CCCCCeeEEEEc--CeEEEEeeCCCeEEEEEe
Q 014104 394 TIRPPITCLAVG--MKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 394 ~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~ 423 (430)
.-|++++|+ -.+++||+-|.++++|.-
T Consensus 377 ---hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 377 ---HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---ceeEEEecCCCCceEEeccccceeeeeec
Confidence 488999994 568999999999999974
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=259.40 Aligned_cols=290 Identities=18% Similarity=0.225 Sum_probs=236.3
Q ss_pred EeEEEEeccccceeEEEec-C--CeEEEEeCCCeEEEEecCC-----CeeEEeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 103 IDIDQWKAHSVGVDQCRMK-R--GLILTGVGDKVMRLWSLEG-----YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~-~--~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
....+|+||++.|+.++.. . +.+++++.|.++.+|++.. |..++.+.+| +.+.-+..++|+++.+ ++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 3456899999999999983 3 3999999999999998754 6678889987 4566699999999999 89999
Q ss_pred eEEEEEcCCCcc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC--CCCeEEEEecCC---C
Q 014104 173 RICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--CAPVTSLSLSED---Q 245 (430)
Q Consensus 173 ~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~~~~---~ 245 (430)
.+++||+.+++. .+..|...+ ..+++++++..+++|+.|.+|++||.. +.+..++..+ .+.|.|+.|+|+ .
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dV-lsva~s~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDV-LSVAFSTDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCce-EEEEecCCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999999863 455555443 345666666779999999999999985 4454455433 789999999986 4
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
+|++++.|++|++||+++.+....+.+ |.+.++.++++|||.+.++|+.||.+.+||++.++.+..+. |...|.+++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~g-h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~- 240 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIG-HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLC- 240 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhcccc-ccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEE-
Confidence 899999999999999999999999988 89999999999999999999999999999999999987765 668999999
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV- 404 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~- 404 (430)
|+|+...|+.+. +..|+|||++++.++..+.....+. ..+.-.....+++|
T Consensus 241 fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~---------------------------s~~~~~~~clslaws 292 (315)
T KOG0279|consen 241 FSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP---------------------------SSKAGDPICLSLAWS 292 (315)
T ss_pred ecCCceeEeecc-CCceEEEeccchhhhhhcccccccc---------------------------ccccCCcEEEEEEEc
Confidence 999877666664 5569999999999988887533311 00111224456677
Q ss_pred -cCeEEEEeeCCCeEEEEEecC
Q 014104 405 -GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 405 -~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
||..|++|-.|+.|++|.+..
T Consensus 293 ~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 293 ADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCCcEEEeeecCCcEEEEEeec
Confidence 599999999999999999853
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=267.47 Aligned_cols=297 Identities=18% Similarity=0.258 Sum_probs=252.8
Q ss_pred hhhcccCCEeEEEEeccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEe
Q 014104 95 RFALEEGRIDIDQWKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLI 170 (430)
Q Consensus 95 ~~~~~~~~~~~~~l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~ 170 (430)
+..|...-+..+.+.||.+.|.|+++.+ + +++||+.|++|+|||+.+|++..++.+| ..+.-+++++..-+++ ++.
T Consensus 134 rPeWHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred CccccCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 4455556667788999999999999943 3 9999999999999999999999999977 6677899999999999 888
Q ss_pred CCeEEEEEcCCCcccccCCCCceeeeeEEEEc--CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEE
Q 014104 171 GTRICIWRRNGLRSVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLI 247 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l 247 (430)
|+.|+.||++..+.+ ....+|...+.|+... -..|++|+.|.++++||+++...+..+.+|..+|..+.+.| +..+
T Consensus 214 dk~VKCwDLe~nkvI-R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqv 292 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVI-RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQV 292 (460)
T ss_pred CCeeEEEechhhhhH-HHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCce
Confidence 999999999988743 3444555556666654 34499999999999999999999999999999999999986 5789
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
++|+.|++|++||++.|+...++.. |...|++++.+|....+|+++.|. |+-|++..+..+..+.+|.+.|+++. ..
T Consensus 293 it~S~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~-~n 369 (460)
T KOG0285|consen 293 ITGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLS-VN 369 (460)
T ss_pred EEecCCceEEEeeeccCceeEeeec-ccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeee-ec
Confidence 9999999999999999999999886 888999999999999999999887 99999999999999999999999998 65
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG-- 405 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-- 405 (430)
.| .++++|+.+|.+.+||.++|...+....-.+ -||-+ -...|++.+||
T Consensus 370 sD-~v~~~G~dng~~~fwdwksg~nyQ~~~t~vq-----pGSl~-----------------------sEagI~as~fDkt 420 (460)
T KOG0285|consen 370 SD-GVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ-----PGSLE-----------------------SEAGIFASCFDKT 420 (460)
T ss_pred cC-ceEEEcCCceEEEEEecCcCccccccccccc-----CCccc-----------------------cccceeEEeeccc
Confidence 54 5788999999999999999987776643211 01111 12478888896
Q ss_pred CeEEEEeeCCCeEEEEEec
Q 014104 406 MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~ 424 (430)
|.+|+||..|.+|++|.-+
T Consensus 421 g~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 421 GSRLITGEADKTIKMYKED 439 (460)
T ss_pred CceEEeccCCcceEEEecc
Confidence 8899999999999999754
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=281.19 Aligned_cols=240 Identities=15% Similarity=0.235 Sum_probs=219.7
Q ss_pred eEEEEeccccceeEEEe-cC--C-eEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KR--G-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.+.+|.||.+.|.++.| |. + .+|||+.||++++|++++..++..+.+|. .+..++|+|+|++|. ++.|.+-++|
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 68899999999999999 43 3 99999999999999999999999999884 456699999999999 9999999999
Q ss_pred EcCCCcccc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 178 RRNGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 178 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
|++++..++ .+|... +..+++.+++..+++|+.|..-+|||+++|.++-.+.+|..+|.+|+|+|+ ..+++|+.|+
T Consensus 289 D~~tk~ElL~QEGHs~~-v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dn 367 (459)
T KOG0272|consen 289 DLETKSELLLQEGHSKG-VFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDN 367 (459)
T ss_pred ccccchhhHhhcccccc-cceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCC
Confidence 999988543 333333 455677778888999999999999999999999999999999999999987 6899999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
+++|||++..+.+.++.. |.+-|+.|+|+| .|.+|++++.|++++||..++..+++.+.+|.+.|.++. ++++++++
T Consensus 368 t~kVWDLR~r~~ly~ipA-H~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~D-is~d~~~i 445 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTIPA-HSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLD-ISPDSQAI 445 (459)
T ss_pred cEEEeeecccccceeccc-ccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEE-eccCCceE
Confidence 999999999999999998 899999999998 788999999999999999999999999999999999999 99999999
Q ss_pred EEEcCCCeEEEEE
Q 014104 334 VVGGIDGVLRVLD 346 (430)
Q Consensus 334 ~s~~~dg~i~vwd 346 (430)
++++.|.++++|.
T Consensus 446 ~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRTIKLWR 458 (459)
T ss_pred EEeccCceeeecc
Confidence 9999999999995
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=271.45 Aligned_cols=283 Identities=16% Similarity=0.224 Sum_probs=247.6
Q ss_pred EeEEEEeccccceeEEEe-c-CC-eEEEEeCCCeEEEEecCC-CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEG-YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~-~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
..+.++.||+..|+++.| + .+ +|++++.|+.|+||++.. ++++++|.+| .++..++|+.+|..++ ++.|+.+++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 357889999999999998 4 45 999999999999999876 8999999998 5567799999999999 999999999
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
||+++++.+...+.+....++.+.++++. +++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++ ..+++.++|+
T Consensus 285 wDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 285 WDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred eccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 99999999988888888888888888744 999999999999999999999999999999999999975 8999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC---ceeeeeecCC--CceEEEEEeeCC
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM---KSLWETRISP--NVVYSLQHLQND 329 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~--~~v~~l~~~s~~ 329 (430)
++++|+.+.+..+........-...++..+|+++++++-+.|..|.+|.+... .....+++|. +.-..+. ||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~-fSpD 443 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD-FSPD 443 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE-EcCC
Confidence 99999999887776655434446788999999999999999999999997642 3334677886 4455666 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---C
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---M 406 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~ 406 (430)
|.+|++|+.||.+.+||.++.+.+..++.|. .++..+.|+ .
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lkah~------------------------------------~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD------------------------------------QPCIGVDWHPVEP 487 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhccccCC------------------------------------cceEEEEecCCCc
Confidence 9999999999999999999999998887654 488888884 5
Q ss_pred eEEEEeeCCCeEEEEE
Q 014104 407 KKVVTTHNSKYIRLWK 422 (430)
Q Consensus 407 ~~l~t~~~Dg~v~vw~ 422 (430)
..+||+|.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 6799999999999996
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=254.74 Aligned_cols=315 Identities=15% Similarity=0.131 Sum_probs=253.6
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee---cC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---LP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
.++..|..-|+|+.| ||| +++|++.||+|.+||-.+++.+..+. .| +.+..++|+||+..++ ++.|.++++||
T Consensus 184 ~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 184 SSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred ecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 466789999999999 677 99999999999999999999999998 34 6678899999999999 89999999999
Q ss_pred cCCCcccccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 179 RNGLRSVFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
+.+.+.+....-+.. ...+.+.+....|++.+.+|+|.+++...+..++.+.+|...|+++..+++ .+|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 998874332222211 223444455777999999999999999999999999999999999999976 89999999999
Q ss_pred EEEEeCCCCceeEE-----------EecCC--------------------------------------------------
Q 014104 256 IAISGLSSDQRVAT-----------LRSTD-------------------------------------------------- 274 (430)
Q Consensus 256 i~vwd~~~~~~~~~-----------~~~~~-------------------------------------------------- 274 (430)
|.-||..++..-+. +....
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence 99999876532111 10000
Q ss_pred -------------------CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce--eeeeecCCCceEEEEEeeCCCCeE
Q 014104 275 -------------------CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS--LWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 275 -------------------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
.-...+++++|++..+++|+.|+.|++|.+..+.. ...+..|.++|+.++ +|||+.+|
T Consensus 424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~va-ySpd~~yl 502 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVA-YSPDGAYL 502 (603)
T ss_pred ecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEE-ECCCCcEE
Confidence 01356889999999999999999999999986543 335667999999999 99999999
Q ss_pred EEEcCCCeEEEEEcCCCce-EEEEEeccCcceeeeccCCce----------EEEeecccccCCcccccCCCCCCCCeeEE
Q 014104 334 VVGGIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNKVSGV----------IERNEGRRLSAGCCIDRIPKTIRPPITCL 402 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~d~~----------v~~~~~~~~~~~~~~~~~~~~h~~~v~~v 402 (430)
++|...+.+.+||+.+.+. ...+..|...+..++++++.. +.+|++ ........+..+|...|+.+
T Consensus 503 a~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv---~kP~~~i~iknAH~~gVn~v 579 (603)
T KOG0318|consen 503 AAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV---KKPAKHIIIKNAHLGGVNSV 579 (603)
T ss_pred EEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc---cChhhheEeccccccCceeE
Confidence 9999999999999998765 455666777776666666554 444443 33344456677899889999
Q ss_pred EE-cCeEEEEeeCCCeEEEEEec
Q 014104 403 AV-GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 403 ~~-~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.| |...+++.|.|..||+|.+.
T Consensus 580 ~wlde~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 580 AWLDESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EEecCceEEeccCcceeEEeccc
Confidence 99 89999999999999999875
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=262.17 Aligned_cols=279 Identities=23% Similarity=0.309 Sum_probs=238.0
Q ss_pred eccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc-
Q 014104 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR- 183 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~- 183 (430)
..-..+|..|.| ++| .|++|+..|.+.+|+..+-........| ..+..+.|++++.+++ +..+|.|++|+.+-..
T Consensus 93 NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV 172 (464)
T KOG0284|consen 93 NKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV 172 (464)
T ss_pred cccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh
Confidence 334567888999 777 9999999999999997543222222333 5678899999999999 8889999999987654
Q ss_pred ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC
Q 014104 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~ 262 (430)
..+..+....+..+++++.+..+++++.||+|+|||....+....+.+|.-.|.+++|+|. .++++|+.|..|++||.+
T Consensus 173 k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr 252 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR 252 (464)
T ss_pred HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence 3455555555666777777777999999999999999999888899999999999999987 799999999999999999
Q ss_pred CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCe
Q 014104 263 SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGV 341 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~ 341 (430)
+++++.++.. |...|..+.|+|++++|++++.|..+++||+++.+.+.++++|...|+++. ++|- ..+|.+|+.||.
T Consensus 253 Sg~cl~tlh~-HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~-WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 253 SGSCLATLHG-HKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLT-WHPLNESLFTSGGSDGS 330 (464)
T ss_pred Ccchhhhhhh-ccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeec-cccccccceeeccCCCc
Confidence 9999999987 889999999999999999999999999999999999999999999999999 7774 458889999999
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEE
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIR 419 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~ 419 (430)
|..|.+...+++.. ++.+|...|++++++ |..|+||+.|.+++
T Consensus 331 vvh~~v~~~~p~~~-----------------------------------i~~AHd~~iwsl~~hPlGhil~tgsnd~t~r 375 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGE-----------------------------------IPPAHDGEIWSLAYHPLGHILATGSNDRTVR 375 (464)
T ss_pred eEEEeccccccccC-----------------------------------CCcccccceeeeeccccceeEeecCCCccee
Confidence 99999874333333 335688899999997 89999999999999
Q ss_pred EEEec
Q 014104 420 LWKFN 424 (430)
Q Consensus 420 vw~~~ 424 (430)
+|.-.
T Consensus 376 fw~r~ 380 (464)
T KOG0284|consen 376 FWTRN 380 (464)
T ss_pred eeccC
Confidence 99643
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=239.99 Aligned_cols=243 Identities=22% Similarity=0.334 Sum_probs=208.1
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
+..++.|.||...|..+.. +++ +.++++.|+++++||+.+++....|.+| ..+..++|++|++.++ ++.|.+|.+|
T Consensus 53 G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 53 GVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred CceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeee
Confidence 3468899999999999988 566 9999999999999999999999999988 4567799999999999 9999999999
Q ss_pred EcCCCcccccCCC--CceeeeeEEEEc--CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 178 RRNGLRSVFPSRE--GTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 178 d~~~~~~~~~~~~--~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
|+.+......... ..-+..++|.|. .+.|++++.|++|++||+++.+....+.+|++.++.++++|+ .+.++|+.
T Consensus 133 nt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 133 NTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred eecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC
Confidence 9988764333322 344556666766 556999999999999999999999999999999999999987 89999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC---------CCceEEE
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS---------PNVVYSL 323 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~~~v~~l 323 (430)
||.+.+||++.++.++.+. +...|.+++|+|+...|+.+... .|+|||+.++..+.+++.. .....++
T Consensus 213 dg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clsl 289 (315)
T KOG0279|consen 213 DGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSL 289 (315)
T ss_pred CceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEE
Confidence 9999999999999999988 77899999999998777766544 4999999998877665421 2234566
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+ |+++|..|++|-.|+.|++|.+.
T Consensus 290 a-ws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 290 A-WSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred E-EcCCCcEEEeeecCCcEEEEEee
Confidence 6 99999999999999999999875
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=279.05 Aligned_cols=276 Identities=16% Similarity=0.250 Sum_probs=227.4
Q ss_pred CEeEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEc
Q 014104 102 RIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRR 179 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~ 179 (430)
....+++......++|..|+|+ .+|.|-.|..|++|.+...+ ++.++......-+. ..+.|-.+.+.|.
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~~~l~~~d--------~~sad~~~~~~D~ 438 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKDASDLSNID--------TESADVDVDMLDD 438 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccchhhhcccc--------ccccchhhhhccc
Confidence 3467888888889999999655 89999999999999987642 22332211100000 0122222333443
Q ss_pred CCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 180 NGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 180 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
+... ..+.+|.+.+ ....+++....|+++++|++|++|.+.+..++-.+++|..||+.+.|+|. -+|++|+.|++.
T Consensus 439 ~~~~~~~~L~GH~GPV-yg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tA 517 (707)
T KOG0263|consen 439 DSSGTSRTLYGHSGPV-YGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTA 517 (707)
T ss_pred cCCceeEEeecCCCce-eeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCcee
Confidence 3322 2355666654 44667777778999999999999999999999999999999999999985 799999999999
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
++|.....++++.+.+ |...|.|+.|+|+..++++|+.|.+|++||+.+|..++.+.+|.++|.+++ |||+|++|++|
T Consensus 518 rLWs~d~~~PlRifag-hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~-~Sp~Gr~LaSg 595 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAG-HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALA-FSPCGRYLASG 595 (707)
T ss_pred eeeecccCCchhhhcc-cccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEE-EcCCCceEeec
Confidence 9999999999999988 888999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeC
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHN 414 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~ 414 (430)
+.||.|++||+.+++++..+.+|. +.|.++.| +|..||+||.
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~Ht------------------------------------~ti~SlsFS~dg~vLasgg~ 639 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKGHT------------------------------------GTIYSLSFSRDGNVLASGGA 639 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhccc------------------------------------CceeEEEEecCCCEEEecCC
Confidence 999999999999999999987764 47777777 5777999999
Q ss_pred CCeEEEEEecC
Q 014104 415 SKYIRLWKFNY 425 (430)
Q Consensus 415 Dg~v~vw~~~~ 425 (430)
|++|++||+..
T Consensus 640 DnsV~lWD~~~ 650 (707)
T KOG0263|consen 640 DNSVRLWDLTK 650 (707)
T ss_pred CCeEEEEEchh
Confidence 99999999864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=254.82 Aligned_cols=283 Identities=17% Similarity=0.323 Sum_probs=243.7
Q ss_pred EEEeccccceeEEEec---CCeEEEEeCCCeEEEEecCC--Ce--eE-----------EeeecCCceeEEEEecCCCEEE
Q 014104 106 DQWKAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEG--YK--CV-----------EEYSLPNAASLVDFDFDESKIV 167 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~--~~--~~-----------~~~~~~~~~~~~~~~~~~~~l~ 167 (430)
+.+. |..+|.+++|+ ++.+++|+.|-+.++|++.. .. .. +.......+..++|+.+|..|+
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444 99999999994 34999999999999999864 11 10 1122235678899999999999
Q ss_pred -EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCC
Q 014104 168 -GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQ 245 (430)
Q Consensus 168 -~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~ 245 (430)
+..+|.+++|+..+... .+..|.+.+ ..+-|.-.+.+|++++.|+++.+||..+++..+.+..|..+-..+.|-.+.
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI-~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPI-FSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCce-EEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence 99999999999998874 455555554 334555556669999999999999999999999999998887889998778
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
.|++++.|+.|+|+-+....++.++.+ |.++|.++.|+|.|.+|++++.|++++||+.........+.+|...|+.+.
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~- 408 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIK- 408 (524)
T ss_pred eEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEe-
Confidence 899999999999999999999999998 888999999999999999999999999999999999999999999999998
Q ss_pred eeCCCC---------eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 326 LQNDTS---------TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 326 ~s~~~~---------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
|+|.|. .+++++.|++|++||+..|.++.++.. |+
T Consensus 409 wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k------------------------------------H~ 452 (524)
T KOG0273|consen 409 WSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK------------------------------------HQ 452 (524)
T ss_pred ecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc------------------------------------CC
Confidence 888754 789999999999999999999999865 55
Q ss_pred CCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 397 PPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 397 ~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+|.+++| +|+++++|+.||.|.+|+.++++-
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l 486 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKL 486 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccchhe
Confidence 58999999 589999999999999999998764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=252.35 Aligned_cols=270 Identities=16% Similarity=0.255 Sum_probs=234.2
Q ss_pred ccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc--c
Q 014104 112 SVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--V 185 (430)
Q Consensus 112 ~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~--~ 185 (430)
+..|++++|+ +| .||+|+.||.+++|+... ..+.++..| +++..+.|+.+|.+|+ ++.|+++.+||..++.. .
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 4679999995 55 999999999999999664 666677665 6677799999999999 88999999999987763 3
Q ss_pred ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC
Q 014104 186 FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 263 (430)
+..+.... +.+...+.. +++.+.||.|+|+.+....++.++.+|.++|.++.|+|. .+|++++.|+++++|+...
T Consensus 314 f~~~s~~~---lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 314 FEFHSAPA---LDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred eeeccCCc---cceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCC
Confidence 44444331 333333333 999999999999999888999999999999999999975 8999999999999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCC---------CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCS---------RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~ 334 (430)
......+.. |...|..+.|+|.| ..+++++.|++|++||+..+.++..+..|..+|++++ |+|+|++++
T Consensus 391 ~~~~~~l~~-Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva-fS~~g~ylA 468 (524)
T KOG0273|consen 391 SNSVHDLQA-HSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA-FSPNGRYLA 468 (524)
T ss_pred Ccchhhhhh-hccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE-ecCCCcEEE
Confidence 999999987 88899999999976 4788999999999999999999999999999999999 999999999
Q ss_pred EEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEe
Q 014104 335 VGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTT 412 (430)
Q Consensus 335 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~ 412 (430)
+|+.||.|.+|++++++.++.+... +.|..+.| +|.+|..+
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~~-------------------------------------~~Ifel~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQGT-------------------------------------GGIFELCWNAAGDKLGAC 511 (524)
T ss_pred ecCCCCeeEeccccchheeEeecCC-------------------------------------CeEEEEEEcCCCCEEEEE
Confidence 9999999999999999999988642 35788888 48889999
Q ss_pred eCCCeEEEEEec
Q 014104 413 HNSKYIRLWKFN 424 (430)
Q Consensus 413 ~~Dg~v~vw~~~ 424 (430)
-.||.+++-|+.
T Consensus 512 ~sd~~vcvldlr 523 (524)
T KOG0273|consen 512 ASDGSVCVLDLR 523 (524)
T ss_pred ecCCCceEEEec
Confidence 999999998874
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=254.71 Aligned_cols=279 Identities=25% Similarity=0.364 Sum_probs=233.6
Q ss_pred EEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 105 IDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
++++.+|.++|.+++++ ++ ++++++.||.|++|++.+++....+..+.. +..+.+.++++.++ ++.++.+.+|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 35678999999999994 44 999999999999999998887777776644 44799999998887 7779999999999
Q ss_pred CCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 181 GLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 181 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
+++.. +..+.. ....+.+.+.+..+++++.+|.|.+||+.+++....+..|...+.+++++|+ .++++++.|+.|+
T Consensus 82 ~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 82 TGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred cccceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 86433 222222 2233444444445777777999999999989998889889999999999985 6777777799999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+||+++++.+..+.. +...+.++.|+|+++.+++++.++.|++||+++++.+..+..|...+.++. ++|++.++++++
T Consensus 161 i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~ 238 (289)
T cd00200 161 LWDLRTGKCVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA-FSPDGYLLASGS 238 (289)
T ss_pred EEEccccccceeEec-CccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEE-EcCCCcEEEEEc
Confidence 999999888888886 777999999999999999999999999999999999988888988999998 999988888888
Q ss_pred CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCC
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNS 415 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~D 415 (430)
.||.|++||+.+++.+..+.. |...|.+++|+ +++|++++.|
T Consensus 239 ~~~~i~i~~~~~~~~~~~~~~------------------------------------~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 239 EDGTIRVWDLRTGECVQTLSG------------------------------------HTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred CCCcEEEEEcCCceeEEEccc------------------------------------cCCcEEEEEECCCCCEEEEecCC
Confidence 899999999998887777654 34578888884 5899999999
Q ss_pred CeEEEEE
Q 014104 416 KYIRLWK 422 (430)
Q Consensus 416 g~v~vw~ 422 (430)
|.|++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=236.80 Aligned_cols=281 Identities=15% Similarity=0.215 Sum_probs=230.9
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC-CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.++..+.||.+.|+.+.| |+| +||||+.|..|.+|+... .+....+++| +++.-+.+..|++.++ ++.|.+++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 356678999999999999 677 999999999999999653 4455666776 5566699999999999 8899999999
Q ss_pred EcCCCcccccCCC-CceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 178 RRNGLRSVFPSRE-GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 178 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
|.++++.+..... ...+..++..-.++. +.+++.||++++||+++..+++++. .+..++++.|... ..+.+|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence 9999986543221 222333333334444 7889999999999999999988886 4568999999854 7899999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----ceeeeeecCCC----ceEEEEEe
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----KSLWETRISPN----VVYSLQHL 326 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~----~v~~l~~~ 326 (430)
.|++||++.+...+.+.+ |..+|+.+..+|+|.++.+-+.|.++++||++.. +++..+.+|.. .....+ |
T Consensus 197 ~ikvWd~r~~d~~~~lsG-h~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cs-w 274 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSG-HADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCS-W 274 (338)
T ss_pred ceeeeccccCcceEEeec-ccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceee-c
Confidence 999999999999999998 8999999999999999999999999999999863 44666666541 233444 8
Q ss_pred eCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc-
Q 014104 327 QNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG- 405 (430)
Q Consensus 327 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~- 405 (430)
+|++..+.+|+.|..+++||..+...+..+++ |.+.|++++|.
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpG------------------------------------h~gsvn~~~Fhp 318 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPG------------------------------------HYGSVNEVDFHP 318 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCC------------------------------------cceeEEEeeecC
Confidence 99999999999999999999998888888876 44589999995
Q ss_pred -CeEEEEeeCCCeEEEEE
Q 014104 406 -MKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 406 -~~~l~t~~~Dg~v~vw~ 422 (430)
...|.+++.|.+|.+=+
T Consensus 319 ~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCcEEEEeccCceeEeec
Confidence 67899999999987633
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=248.12 Aligned_cols=286 Identities=12% Similarity=0.113 Sum_probs=233.1
Q ss_pred CEeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCC---eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeE
Q 014104 102 RIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGY---KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
....+.|..|++.|.-+.|+ +| |||||+.|.+..+|++... +..+++.+| .++..+.|+||.++|+ ++.+..+
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~ 293 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVL 293 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHhe
Confidence 34566789999999999994 56 9999999999999987643 345666666 6677799999999999 7778889
Q ss_pred EEEEcCCCcccccCC--CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC-CCeEEEEecCC-CEEEEE
Q 014104 175 CIWRRNGLRSVFPSR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISG 250 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~ 250 (430)
.+||+.++.....-. .+.....++|.+++..+++|+.|+++..||+. |+.+...++.. ..|.+++..++ .++++.
T Consensus 294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v 372 (519)
T KOG0293|consen 294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLV 372 (519)
T ss_pred eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEE
Confidence 999999988543222 24556678889999999999999999999984 55555554433 46899999965 888888
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE-Eee-C
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ-HLQ-N 328 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~-~~s-~ 328 (430)
+.|..|++++.++......+. ...+|+++..+.+++++++.-.+..+.+||++..+.+..+.+|...-+-+. +|. .
T Consensus 373 ~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~ 450 (519)
T KOG0293|consen 373 TVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGG 450 (519)
T ss_pred ecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCC
Confidence 999999999998766665554 455899999999999999999999999999999889999999974432221 133 3
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---
Q 014104 329 DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--- 405 (430)
Q Consensus 329 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--- 405 (430)
+..++++||+|+.|+||+..+|+++..+.+ |...|+||+++
T Consensus 451 ~~~fiaSGSED~kvyIWhr~sgkll~~LsG------------------------------------Hs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 451 NDKFIASGSEDSKVYIWHRISGKLLAVLSG------------------------------------HSKTVNCVSWNPAD 494 (519)
T ss_pred CcceEEecCCCceEEEEEccCCceeEeecC------------------------------------CcceeeEEecCCCC
Confidence 457999999999999999999999999976 44589999994
Q ss_pred CeEEEEeeCCCeEEEEEecCC
Q 014104 406 MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...+|+||+||+||||.....
T Consensus 495 p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred HHHhhccCCCCeEEEecCCcc
Confidence 678999999999999987643
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=225.37 Aligned_cols=278 Identities=15% Similarity=0.191 Sum_probs=222.6
Q ss_pred EeEEEEeccccceeEEEecCC---eEEEEeCCCeEEEEecCCC---eeEEeeec--CCceeEEEEecCCCEEEEEeCCeE
Q 014104 103 IDIDQWKAHSVGVDQCRMKRG---LILTGVGDKVMRLWSLEGY---KCVEEYSL--PNAASLVDFDFDESKIVGLIGTRI 174 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~---~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~i 174 (430)
..++.++||.+.+..++++++ .||||+.|+.|++|+...+ .+...+.. ...+..++|+|.|++
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~--------- 75 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRY--------- 75 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcE---------
Confidence 467789999999999999554 7999999999999998853 33333322 244556667666665
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC--eeeEEeecCCCCeEEEEecC-CCEEEEEe
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQIIRMHCAPVTSLSLSE-DQLIISGS 251 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~~~-~~~l~~~~ 251 (430)
|++|+.|.++.||.-..+ +++.++++|...|.+++|++ +++||+++
T Consensus 76 -------------------------------La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 76 -------------------------------LASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCS 124 (312)
T ss_pred -------------------------------EEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEee
Confidence 788888888888875544 68899999999999999996 59999999
Q ss_pred CCCeEEEEeCCCC---ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC---CceeeeeecCCCceEEEEE
Q 014104 252 SLGSIAISGLSSD---QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT---MKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 252 ~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~l~~ 325 (430)
.|++|-+|.+..+ .+...++. |...|..+.|+|...+|++++.|.+|++|+-.. -++.+++.+|...|++++
T Consensus 125 RDKSVWiWe~deddEfec~aVL~~-HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~- 202 (312)
T KOG0645|consen 125 RDKSVWIWEIDEDDEFECIAVLQE-HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLA- 202 (312)
T ss_pred CCCeEEEEEecCCCcEEEEeeecc-ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEE-
Confidence 9999999998744 34566666 888999999999999999999999999998762 467889999999999999
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCC------ceEEEEEeccCcceeeeccCCceEEEeecccccCCccc---ccCCCCCC
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTG------EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI---DRIPKTIR 396 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~---~~~~~~h~ 396 (430)
|++.|..|++++.|++|+||-..+. ..++.++-. .-.++++..|+.+.++....-+.+..+ ......|.
T Consensus 203 F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe 280 (312)
T KOG0645|consen 203 FDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHE 280 (312)
T ss_pred ecCCCceEEEecCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccc
Confidence 9999999999999999999984422 234444443 335778888998887766654444333 33456799
Q ss_pred CCeeEEEEc---CeEEEEeeCCCeEEEEEec
Q 014104 397 PPITCLAVG---MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 397 ~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~ 424 (430)
..|++|+++ .++|++||+||.|++|.+.
T Consensus 281 ~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 281 VDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999999996 5789999999999999975
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=231.81 Aligned_cols=246 Identities=15% Similarity=0.193 Sum_probs=215.0
Q ss_pred EeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC
Q 014104 146 EEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 222 (430)
+++++| +.+..+.|++|.+.++ ++.||.+.|||.-+...+ .......-+..++++|.+..+++|+.|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 667776 5678899999999999 899999999998765432 2222223334567778888899999999999999986
Q ss_pred C------eeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec-CCCEEEEEeC
Q 014104 223 R------KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTT 295 (430)
Q Consensus 223 ~------~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 295 (430)
. +..+.+.+|++-+.|+.|.++..|++++.|.++.+||+++++.+..|.+ |.+.|.++.++| +++.+++|+-
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~G-H~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHG-HTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecC-CcccEEEEecCCCCCCeEEeccc
Confidence 5 3456789999999999999889999999999999999999999999998 999999999999 9999999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 296 AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
|+..++||++.+.+++.|.+|...|+++. |.|+|.-+++|+.|++.++||++..+.+..+.....
T Consensus 208 D~~aklWD~R~~~c~qtF~ghesDINsv~-ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~-------------- 272 (343)
T KOG0286|consen 208 DKSAKLWDVRSGQCVQTFEGHESDINSVR-FFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI-------------- 272 (343)
T ss_pred ccceeeeeccCcceeEeecccccccceEE-EccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc--------------
Confidence 99999999999999999999999999999 889999999999999999999999988888763221
Q ss_pred EeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 376 RNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..+|++++| +|++|++|..|.++.|||.-.++
T Consensus 273 --------------------~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 273 --------------------ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE 306 (343)
T ss_pred --------------------cCCceeEEEcccccEEEeeecCCceeEeeccccc
Confidence 258999999 59999999999999999986655
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=253.80 Aligned_cols=318 Identities=18% Similarity=0.232 Sum_probs=257.7
Q ss_pred EeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-E-EeCCeEEEEEcCCC
Q 014104 108 WKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-G-LIGTRICIWRRNGL 182 (430)
Q Consensus 108 l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~ 182 (430)
|......|+|.+|..+ .|++|-..|...+|++..-.+++.+... ..+..++|+..|+.|+ + +.-|++-||+..+.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 3444578999999766 8999999999999999999999998875 6677899999999999 4 34489999999988
Q ss_pred cccccCCCCcee--eeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEE
Q 014104 183 RSVFPSREGTFM--KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vw 259 (430)
..+++.. +|.. ..+..++++..+++|+.||.|+|||..++-|+.++..|+..|+.+.|+ .++.+++.+-||+|+.|
T Consensus 341 sYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAw 419 (893)
T KOG0291|consen 341 SYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAW 419 (893)
T ss_pred ceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEee
Confidence 7665433 3333 345555667789999999999999999999999999999999999999 46899999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
|+...+..++|..+...+..|++.+|.|..+++|+.|. .|.+|++++|+.+..+.+|.++|.+++ |+|++..|+++|.
T Consensus 420 DlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~-f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 420 DLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLS-FSPDGSLLASGSW 498 (893)
T ss_pred eecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeE-EccccCeEEeccc
Confidence 99999999999987777889999999999999998876 599999999999999999999999999 9999999999999
Q ss_pred CCeEEEEEcCCCc-e---------EEEEEeccCcceeeeccCCceEEEeecccccCC------------cc-cccCC---
Q 014104 339 DGVLRVLDQNTGE-V---------LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAG------------CC-IDRIP--- 392 (430)
Q Consensus 339 dg~i~vwd~~~~~-~---------~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~------------~~-~~~~~--- 392 (430)
|.+|++||+-... . +-.+..++++..++..+-||++.+|+...-..- .. ...+.
T Consensus 499 DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 9999999986431 2 223334555666777777777776655432211 00 01111
Q ss_pred CCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 393 KTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 393 ~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.......+.+.+ ||..+++||....|++|++.++-
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV 615 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence 122356777766 89999999999999999998763
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=236.10 Aligned_cols=318 Identities=14% Similarity=0.186 Sum_probs=232.8
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
...+.+|..|++.|.+++. |+. +++||+.|....+|++.+++....+.+| +.+..+.|+.+|.+|+ +..+|.|+||
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 3457789999999999999 444 9999999999999999999988888876 6788899999999999 8899999999
Q ss_pred EcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 178 RRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 178 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
...++....... ......-++|.+....+++|+.||.+.+|.+.++...+.+.+|+.++++=.|.|+ +.++++..||+
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 999987544432 3333344666666666999999999999999988888999999999999999975 89999999999
Q ss_pred EEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee--------cCCCceEEEEE--
Q 014104 256 IAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR--------ISPNVVYSLQH-- 325 (430)
Q Consensus 256 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~l~~-- 325 (430)
|++||+.+++++.++.+.......++.++..+..++.|+.++.+++-+..+++.+.... .+...+.++.+
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 99999999999988875444455666666666666666666666666666665554443 12222222220
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCceEEEE---------EeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC---------VMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~---------~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
++..=++.|+|+.||+|.|||+...++...+ .... ..++++++.+|.++.|+.+.-. +.....+|+
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~----l~~~y~GH~ 368 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ----LKFTYTGHQ 368 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccc----eEEEEecCc
Confidence 3333345566666666666666544332222 2222 2355566666666655544321 122225677
Q ss_pred CCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 397 PPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 397 ~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
..|.++++ +.++++|+|.|++.+|+++.
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 89999888 68899999999999999875
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=262.92 Aligned_cols=320 Identities=16% Similarity=0.247 Sum_probs=243.1
Q ss_pred CCEeEEEEeccccceeEEEecCC----eEEEEeCCCeEEEEecCCCee-EEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 101 GRIDIDQWKAHSVGVDQCRMKRG----LILTGVGDKVMRLWSLEGYKC-VEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~~~~----~l~s~~~dg~i~iwd~~~~~~-~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
+.+..+.|+||.+.|.++.|.+. .|++|..|+++++||+.+... +.....| ..+..++|++|+..++ ++.|..
T Consensus 136 ~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkv 215 (775)
T KOG0319|consen 136 NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKV 215 (775)
T ss_pred CCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcE
Confidence 44578899999999999999432 789999999999999996544 6666655 6678899999998888 899999
Q ss_pred EEEEEcCCCcccccCCCCceee----------------------------------------------------------
Q 014104 174 ICIWRRNGLRSVFPSREGTFMK---------------------------------------------------------- 195 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~---------------------------------------------------------- 195 (430)
+.+||+...+.....+......
T Consensus 216 i~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~ 295 (775)
T KOG0319|consen 216 IIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQ 295 (775)
T ss_pred EEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCc
Confidence 9999986543221111111111
Q ss_pred ------------------------------eeEEEEcCCc---eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE-e
Q 014104 196 ------------------------------GLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS-L 241 (430)
Q Consensus 196 ------------------------------~~~~~~~~~~---l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~-~ 241 (430)
+..+.+.++. +++++..+.+++|+..+..+. .+.+|+..|.+++ +
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW 374 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec
Confidence 1122222221 455555555555555444433 5678999999998 4
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCc----eeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce-----e-
Q 014104 242 SEDQLIISGSSLGSIAISGLSSDQ----RVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKS-----L- 310 (430)
Q Consensus 242 ~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~-----~- 310 (430)
+.+.++++|+.|.++++|.++++. ++....+ |...|.+++++..+ .+|++++.|+++++|++...+. +
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g-H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG-HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc-cccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 456799999999999999774433 3444555 88899999997655 5889999999999999976221 1
Q ss_pred ---eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc----------eeeeccCCceEEEe
Q 014104 311 ---WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA----------SSSSNKVSGVIERN 377 (430)
Q Consensus 311 ---~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~~s~d~~v~~~ 377 (430)
.....|...|++++ ++|+.++++|||.|.+.+||+++.+..+.++.+|..++ .+++.|.|.++++|
T Consensus 454 ~~~~t~~aHdKdIN~Va-ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW 532 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVA-IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIW 532 (775)
T ss_pred hhhHHHHhhcccccceE-ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEE
Confidence 13457889999999 99999999999999999999999999999999999877 45667778888777
Q ss_pred ecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 378 EGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 378 ~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
....++ ++.++ .+|+..|..++| +|..|+|++.||.|++|++++++
T Consensus 533 ~is~fS---ClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 533 SISTFS---CLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred Eeccce---eeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 665544 34444 689999999999 79999999999999999999875
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=223.43 Aligned_cols=255 Identities=18% Similarity=0.189 Sum_probs=214.4
Q ss_pred CEeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.++++.+..|+++|.++.|+ +| |.++++.|++|++|+...+.+++++.+|+. +.-.+.+.|+..++ ++.|..+.+|
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 34677889999999999995 45 999999999999999999999999999854 55588999999999 8899999999
Q ss_pred EcCCCcc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC--eeeEEeecCCCCeEEEEecCCCEEEEEeCC
Q 014104 178 RRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQIIRMHCAPVTSLSLSEDQLIISGSSL 253 (430)
Q Consensus 178 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d 253 (430)
|+++++. .+..|.+.+ ..+.+......+++|+.|.++++||.++. ++++.+....+.|.++..+ +..+++|+.|
T Consensus 87 DV~TGkv~Rr~rgH~aqV-NtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~-~heIvaGS~D 164 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQV-NTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA-EHEIVAGSVD 164 (307)
T ss_pred EcccCeeeeeccccccee-eEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec-ccEEEeeccC
Confidence 9999984 345555443 22333333444999999999999998865 6888998888999999995 4578999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE-EeeCCCCe
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ-HLQNDTST 332 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~-~~s~~~~~ 332 (430)
|+++.||++.|+...... ..+|+++.|+++++...+++-|+++++.|-.+|+.+..+++|.+.-+.+. .++.....
T Consensus 165 GtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdth 241 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTH 241 (307)
T ss_pred CcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccccee
Confidence 999999999998876664 45899999999999999999999999999999999999999987655554 24556678
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+++|++||.|++||+.+...+..+..+..
T Consensus 242 V~sgSEDG~Vy~wdLvd~~~~sk~~~~~~ 270 (307)
T KOG0316|consen 242 VFSGSEDGKVYFWDLVDETQISKLSVVST 270 (307)
T ss_pred EEeccCCceEEEEEeccceeeeeeccCCc
Confidence 99999999999999999988888875443
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=267.40 Aligned_cols=208 Identities=24% Similarity=0.360 Sum_probs=189.7
Q ss_pred CCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEEEEeCCeEEEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIVGLIGTRICIW 177 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~vw 177 (430)
.....+++.||.++|..+.| |+. +|+++|.|++||+|.+.+..++-.+++|.. +..+.|+|.|-
T Consensus 440 ~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~Gy------------- 506 (707)
T KOG0263|consen 440 SSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGY------------- 506 (707)
T ss_pred CCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCce-------------
Confidence 33456779999999999999 555 999999999999999999999988888743 33455555443
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
++++++.|++.++|.....++++.+.+|.+.|.|+.|+|+ .++++||.|.+|
T Consensus 507 ---------------------------YFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 507 ---------------------------YFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTV 559 (707)
T ss_pred ---------------------------EEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceE
Confidence 3899999999999999999999999999999999999998 899999999999
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
++||+.+|..++.|.+ |.++|.+++|+|+|++|++|+.||.|.+||+.+++.+..+.+|.+.|+++. |+.+|..||+|
T Consensus 560 RlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sls-FS~dg~vLasg 637 (707)
T KOG0263|consen 560 RLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLS-FSRDGNVLASG 637 (707)
T ss_pred EEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEE-EecCCCEEEec
Confidence 9999999999999998 999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCCCeEEEEEcCCC
Q 014104 337 GIDGVLRVLDQNTG 350 (430)
Q Consensus 337 ~~dg~i~vwd~~~~ 350 (430)
+.|++|++||+..-
T Consensus 638 g~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 638 GADNSVRLWDLTKV 651 (707)
T ss_pred CCCCeEEEEEchhh
Confidence 99999999998743
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=232.71 Aligned_cols=282 Identities=16% Similarity=0.204 Sum_probs=244.3
Q ss_pred EEeccccceeEEEe----cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 107 QWKAHSVGVDQCRM----KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 107 ~l~~h~~~v~~~~~----~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
+..||+.+|..++| |+| +|++++.|+.-.+-+-++|..+.+|.+|.+ +...+++.+....+ ++.|-+.++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 57899999999999 467 899999999999999999999999999844 45566666665666 788999999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-eeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIA 257 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~ 257 (430)
-++..+......+++..+++..+...|++|+.+..++|||++..+ +...+.+|.+.|..+.|. .++.|++.+.|++|+
T Consensus 89 ~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVR 168 (334)
T KOG0278|consen 89 VTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVR 168 (334)
T ss_pred hhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceE
Confidence 999888877888898999999999999999999999999998764 567888999999999998 568899999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+||.+++..++++. ...+|+++.++++|++|.++ ..+.|.+||..+..+++.++.. ..|.+.. ++|+...+++|+
T Consensus 169 LWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-~nV~SAS-L~P~k~~fVaGg 243 (334)
T KOG0278|consen 169 LWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-CNVESAS-LHPKKEFFVAGG 243 (334)
T ss_pred EEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-ccccccc-ccCCCceEEecC
Confidence 99999999999998 66789999999999987765 4567999999999888887654 5677877 999999999999
Q ss_pred CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCC
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNS 415 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~D 415 (430)
.|..++.||..+|+.+..+. ++|-++|-||.| ||...++||+|
T Consensus 244 ed~~~~kfDy~TgeEi~~~n-----------------------------------kgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYN-----------------------------------KGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cceEEEEEeccCCceeeecc-----------------------------------cCCCCceEEEEECCCCceeeccCCC
Confidence 99999999999999887751 345568888888 67889999999
Q ss_pred CeEEEEEecCCCc
Q 014104 416 KYIRLWKFNYSDK 428 (430)
Q Consensus 416 g~v~vw~~~~~~~ 428 (430)
|+||+|+...++.
T Consensus 289 GTirlWQt~~~~~ 301 (334)
T KOG0278|consen 289 GTIRLWQTTPGKT 301 (334)
T ss_pred ceEEEEEecCCCc
Confidence 9999999887654
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=259.11 Aligned_cols=283 Identities=16% Similarity=0.190 Sum_probs=232.2
Q ss_pred EeEEEEeccccceeEEEe--cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM--KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~--~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
..++.+-|..+.|..++| ++. +++.+++.+.+|+|+..+..+. .+.+| +.+.++....+|..|+ ++.|.++++|
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilW 392 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILW 392 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEE
Confidence 355677899999999999 433 9999999999999999887766 55555 4455566556777788 8999999999
Q ss_pred EcCCCcc---cccCCCCceeee--eEEEEcCC-ceEEEecCCeEEEEECCCCee-----eE----EeecCCCCeEEEEec
Q 014104 178 RRNGLRS---VFPSREGTFMKG--LCMRYFDP-EAVVGCEDGTARVFDMYSRKC-----SQ----IIRMHCAPVTSLSLS 242 (430)
Q Consensus 178 d~~~~~~---~~~~~~~~~~~~--~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~-----~~----~~~~~~~~i~~~~~~ 242 (430)
.++.+.. ......+|...+ ++++..+. .+++++.|+++++|++...+. +. +...|...|++++++
T Consensus 393 r~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia 472 (775)
T KOG0319|consen 393 RLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA 472 (775)
T ss_pred EecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec
Confidence 9955432 122222333222 33333333 399999999999999875221 11 234799999999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE
Q 014104 243 ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY 321 (430)
Q Consensus 243 ~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 321 (430)
|+ .++++||.|.+.++|++...+...++.+ |..+|.++.|+|..+.+++++.|.+|+||.+.+..++.++.+|...|.
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-H~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVl 551 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-HTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVL 551 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeC-CccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeE
Confidence 86 8999999999999999999999999998 899999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE
Q 014104 322 SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC 401 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 401 (430)
... |-.+|+.|++++.||.|++|++.+++|+.++..|.+ .|++
T Consensus 552 ra~-F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D------------------------------------rvWa 594 (775)
T KOG0319|consen 552 RAS-FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND------------------------------------RVWA 594 (775)
T ss_pred eee-eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc------------------------------------eeEE
Confidence 999 777899999999999999999999999999987555 7888
Q ss_pred EEE--cCeEEEEeeCCCeEEEEEec
Q 014104 402 LAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 402 v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
++. ....++||+.||.|.+|.=.
T Consensus 595 L~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 595 LSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred EeecCccceeEecCCCeEEEEeecC
Confidence 777 35679999999999999643
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=249.79 Aligned_cols=320 Identities=16% Similarity=0.197 Sum_probs=248.8
Q ss_pred eEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeE--EeeecCC-ceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 104 DIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCV--EEYSLPN-AASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
+.+++.||.+.|.++.|+++ +|++|+.|.++++|+++..+-. ..+.+|. .+...-|..+...++ .+.||.+.+|
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 45678899999999999655 9999999999999999876664 4444553 344456667777777 8999999999
Q ss_pred EcCCC-----------------------cc-----cccCC-----CCceeeeeEEEEcC--CceEEEecCCeEEEEECCC
Q 014104 178 RRNGL-----------------------RS-----VFPSR-----EGTFMKGLCMRYFD--PEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 178 d~~~~-----------------------~~-----~~~~~-----~~~~~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~ 222 (430)
..... +. .+... ......+.|..+.. ..+++|-..|...+|++..
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~ 296 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD 296 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence 87611 00 00000 00012233333322 2389999999999999999
Q ss_pred CeeeEEeecCCCCeEEEEec-CCCEEEEEeCC-CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 223 RKCSQIIRMHCAPVTSLSLS-EDQLIISGSSL-GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
..+++.+.....+|..+.|+ .+++++.|+.. |.+.||+..+...+.+..+ |...+++++++|||+++++|+.||+|+
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQg-H~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQG-HSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccc-cccceeeEEECCCCcEEEeccCCCcEE
Confidence 99999998888899999998 56888888754 8999999999888888887 888999999999999999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCc-ceeeeccCCceEE----
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGS-ASSSSNKVSGVIE---- 375 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~s~d~~v~---- 375 (430)
|||...+-++.++..|.+.|+.+. |+..|+.+++.+.||+|+.||+...+..+++...... ...++..+.|.+.
T Consensus 376 vWn~~SgfC~vTFteHts~Vt~v~-f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEHTSGVTAVQ-FTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred EEeccCceEEEEeccCCCceEEEE-EEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 999999999999999999999999 9999999999999999999999998888888653321 1222222223321
Q ss_pred ----EeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 376 ----RNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 376 ----~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..-+|.+.+++.+. +..+|.++|.+++| ++..|+|||.|.+||+|++-..
T Consensus 455 ~d~F~IfvWS~qTGqllD-iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 455 QDSFEIFVWSVQTGQLLD-ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred cceEEEEEEEeecCeeee-hhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 12234444444443 44889999999888 5899999999999999998543
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=247.80 Aligned_cols=242 Identities=17% Similarity=0.254 Sum_probs=209.2
Q ss_pred eEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 104 DIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
.++.|.||++.|.|+.|.+..+++|+.|.+|+|||.+++++++++-+| ...++.+-+.+.+++ ++.|.++.+||+...
T Consensus 229 c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihH-ceaVLhlrf~ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHH-CEAVLHLRFSNGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred HHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhh-cceeEEEEEeCCEEEEecCCceeEEEeccCc
Confidence 456789999999999999999999999999999999999999998876 344555566677888 889999999999877
Q ss_pred cc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 183 RS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260 (430)
Q Consensus 183 ~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd 260 (430)
.. ......+|...+..+.++++++++++.|.+|++|++.++++++++.+|...|-|+.+ .+.++++|+.|.+|++||
T Consensus 308 s~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-r~rlvVSGSSDntIRlwd 386 (499)
T KOG0281|consen 308 TDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-RDRLVVSGSSDNTIRLWD 386 (499)
T ss_pred hHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc-cCeEEEecCCCceEEEEe
Confidence 52 223334555556777788888999999999999999999999999999999999998 678999999999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc---------eeeeeecCCCceEEEEEeeCCCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK---------SLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
+..|.+++.+++ |+.-|.++.| +.+.+++|+.||+|++||+..+. ++..+..|.+.|..+. | |..
T Consensus 387 i~~G~cLRvLeG-HEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ-F--D~f 460 (499)
T KOG0281|consen 387 IECGACLRVLEG-HEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ-F--DEF 460 (499)
T ss_pred ccccHHHHHHhc-hHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe-e--cce
Confidence 999999999998 8889999999 66889999999999999997643 3455667889999998 6 667
Q ss_pred eEEEEcCCCeEEEEEcCCCceE
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
.+++++.|.+|.|||..++.+-
T Consensus 461 qIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 461 QIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEEeccCCCeEEEEEcCCCCcc
Confidence 8999999999999999877554
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=240.18 Aligned_cols=246 Identities=19% Similarity=0.299 Sum_probs=199.7
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEE--eeec-CCceeEEEEecCCCEEEEEeC-----Ce
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVE--EYSL-PNAASLVDFDFDESKIVGLIG-----TR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~~~-----~~ 173 (430)
.+..+..|..+++-..| |.| |+++|...|+|||||....+.+. +++. .+.+.-++|++++++|++..+ |.
T Consensus 51 ~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~ 130 (603)
T KOG0318|consen 51 SVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGH 130 (603)
T ss_pred ceeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeE
Confidence 35677899999999999 566 99999999999999987644332 3332 356777999999999995554 34
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+.+||.-+..--+..|... ...+.+.+..|. +++|++|++|.+|+-..-+.-.++..|...|.++.|+|+ +.+++++
T Consensus 131 ~F~~DSG~SvGei~GhSr~-ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRR-INSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred EEEecCCCccceeecccee-EeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec
Confidence 6677765543334444333 334555566666 999999999999997666777788899999999999987 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce--------------------
Q 014104 252 SLGSIAISGLSSDQRVATLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS-------------------- 309 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------------------- 309 (430)
.||++.+||-.+++.+..+.. +|.+.|.+++|+||+..+++++.|.+++|||+.+.++
T Consensus 210 sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq 289 (603)
T KOG0318|consen 210 SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ 289 (603)
T ss_pred CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe
Confidence 999999999999999999872 3889999999999999999999999999999976532
Q ss_pred -----------------------eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 310 -----------------------LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 310 -----------------------~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
+..+.+|...|+++. .+|++++|++|+.||.|.-||..+|.
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt-v~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT-VSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChhheecccccceeEEE-EcCCCCEEEeeccCceEEEEecCCcc
Confidence 234567888999999 99999999999999999999998654
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=235.91 Aligned_cols=275 Identities=19% Similarity=0.211 Sum_probs=224.0
Q ss_pred ccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEE-ecCCC--EEE-EEeCCeEEEEEcCCCcc
Q 014104 110 AHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDF-DFDES--KIV-GLIGTRICIWRRNGLRS 184 (430)
Q Consensus 110 ~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~-~~~~~--~l~-~~~~~~i~vwd~~~~~~ 184 (430)
-|.+.|.++....+.++||+.||.+++||.. |+..+.+.+|.+ +..+++ .++.. .++ ++.|.++++|..+.++.
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 4888898888887799999999999999965 688888888754 443444 33333 245 99999999999987764
Q ss_pred cc---cCCCCceeeeeE--EEEcCCceEEEecCCeEEEEECC-------------------------CCeeeEEeecCCC
Q 014104 185 VF---PSREGTFMKGLC--MRYFDPEAVVGCEDGTARVFDMY-------------------------SRKCSQIIRMHCA 234 (430)
Q Consensus 185 ~~---~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~vwd~~-------------------------~~~~~~~~~~~~~ 234 (430)
.. ....+|...+-+ ....+..+++|+.|.++.+|+.. ++.++.++.+|..
T Consensus 182 ~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 182 KVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred hhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccc
Confidence 22 222244333344 44566669999999999999932 1235567889999
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc---eee
Q 014104 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK---SLW 311 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---~~~ 311 (430)
+|.++.|++...+++++.|.+|+.||+.++..+.++.+ ...+.++.++|..++|++|+.|..+++||.+++. ...
T Consensus 262 ~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~--~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~ 339 (423)
T KOG0313|consen 262 PVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT--NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ 339 (423)
T ss_pred ceeeEEEcCCCceEeecccceEEEEEeecccceeeeec--CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE
Confidence 99999999888999999999999999999999988884 5689999999999999999999999999999853 346
Q ss_pred eeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCc-eEEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 312 ETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGE-VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 312 ~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
++.+|.+.|.++. ++|... .|++|+.|+++++||+++.+ ++..+..|
T Consensus 340 s~~gH~nwVssvk-wsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h------------------------------ 388 (423)
T KOG0313|consen 340 SLIGHKNWVSSVK-WSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH------------------------------ 388 (423)
T ss_pred eeecchhhhhhee-cCCCCceEEEEEecCCeEEEEEeccCCCcceeeccC------------------------------
Confidence 7899999999999 777655 77899999999999999877 88888764
Q ss_pred cCCCCCCCCeeEEEEc-CeEEEEeeCCCeEEEEEec
Q 014104 390 RIPKTIRPPITCLAVG-MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~ 424 (430)
.+.|.++.|+ +..++|||.|.+|+|+.-.
T Consensus 389 ------~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 389 ------NDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ------CceEEEEeccCCceEEeccCcceEEEeccc
Confidence 4589999995 7799999999999999754
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=218.98 Aligned_cols=259 Identities=15% Similarity=0.193 Sum_probs=215.9
Q ss_pred cCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
..+.+.++++...+.|+.+.. |++ .||+|+. -.||+||+.++. ++.+|.+| ..+..+.|..+|+.++ ++.||+
T Consensus 28 ~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 28 LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 456788889888889999999 666 6666654 689999998764 58899988 7788899999999999 899999
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee-cCCCCeEEEEecCC-CEEEEEe
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
++|||+..............+..+++.+....|++|..+|.|++||+....+...+- ....+|.++...|+ .+++.+.
T Consensus 107 ~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred EEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec
Confidence 999999985532211122334456666666679999999999999999887765554 33458999999976 8888899
Q ss_pred CCCeEEEEeCCCCc------eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCceEEEE
Q 014104 252 SLGSIAISGLSSDQ------RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-KSLWETRISPNVVYSLQ 324 (430)
Q Consensus 252 ~dg~i~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~ 324 (430)
..|..++|++-+.+ ++.+++. |.+.+..+.+||++++|++++.|.+++||+..+. +....+++|...++..+
T Consensus 187 nkG~cyvW~l~~~~~~s~l~P~~k~~a-h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQTASELEPVHKFQA-HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred CCccEEEEEccCCCccccceEhhheec-ccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 99999999987643 3555665 8889999999999999999999999999999987 66678899999999999
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
||.||+||+||+.|+.+++||+..++.++.+.+|..
T Consensus 266 -FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 266 -FSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred -eccCccEEEecCCCCceeecccccCceeeecCCccc
Confidence 999999999999999999999999999999987665
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=260.66 Aligned_cols=283 Identities=23% Similarity=0.392 Sum_probs=235.9
Q ss_pred EEEEecc-ccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 105 IDQWKAH-SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 105 ~~~l~~h-~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
...+.+| ...|.++.| ++| ++++++.|+.+++|+..+.+ ....+.+| ..+..++|++++++++ ++.|+++++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 4555565 789999999 566 99999999999999997777 66666555 5677799999999999 8899999999
Q ss_pred EcCCC-c--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 178 RRNGL-R--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 178 d~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
|++.. . .++..|...+ ..+++.+.+..+++|+.|++|++||+++++++..+.+|.+.|++++|+++ +++++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v-~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYV-TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCce-EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 99444 3 2344444443 55667777777999999999999999999999999999999999999965 899999999
Q ss_pred CeEEEEeCCCCc--eeEEEecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCce---EEEEEee
Q 014104 254 GSIAISGLSSDQ--RVATLRSTDCT-GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV---YSLQHLQ 327 (430)
Q Consensus 254 g~i~vwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v---~~l~~~s 327 (430)
+.|++||+.++. ++..+.+.... +++++.|+|++.++++++.|+.+++||++.+..+..+.+|...+ .+.. .+
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~-~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT-LS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc-cc
Confidence 999999999999 56777663333 69999999999999999999999999999999999999998653 3333 57
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG-- 405 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-- 405 (430)
+.+.++++|+.|+.|++||+.++..+..+.+|. ...+..++++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-----------------------------------~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-----------------------------------KAAVSDLSSHPT 433 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-----------------------------------CCceeccccCCC
Confidence 789999999999999999999988888887652 2466667774
Q ss_pred CeEEEEee--CCCeEEEEEec
Q 014104 406 MKKVVTTH--NSKYIRLWKFN 424 (430)
Q Consensus 406 ~~~l~t~~--~Dg~v~vw~~~ 424 (430)
.+++++++ .|+.|++|..+
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCeeeecCcCCCceEEEecCC
Confidence 67788888 79999999865
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=236.98 Aligned_cols=245 Identities=17% Similarity=0.217 Sum_probs=216.8
Q ss_pred EEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECC
Q 014104 145 VEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 145 ~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 221 (430)
.+.+.+| +-+.++++.|-++.++ ++.|+++.|||+.+++..+... .-..+..+.++.-+|++++++.|+.|+.||++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 3445555 5688899999999999 8999999999999998543322 22334567788889999999999999999999
Q ss_pred CCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 222 SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 222 ~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
..+.++.+.+|-+.|.|++.+|. +.+++|+.|.++++||+++...+..+.+ |..+|..+.+.|....+++|+.|++|+
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-HTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-CCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999987 8999999999999999999999999998 999999999999888999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecc
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGR 380 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~ 380 (430)
+||++.++....+..|...|.+++ .+|....+++++.| .|+-|++..|+.++.+.+
T Consensus 303 lWDl~agkt~~tlt~hkksvral~-lhP~e~~fASas~d-nik~w~~p~g~f~~nlsg---------------------- 358 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALC-LHPKENLFASASPD-NIKQWKLPEGEFLQNLSG---------------------- 358 (460)
T ss_pred EeeeccCceeEeeecccceeeEEe-cCCchhhhhccCCc-cceeccCCccchhhcccc----------------------
Confidence 999999999999999999999999 99999999999877 599999999988887655
Q ss_pred cccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 381 RLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 381 ~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|+..|++++. +..++++|++.|.+.+||.++|-.
T Consensus 359 --------------h~~iintl~~nsD~v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 359 --------------HNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred --------------ccceeeeeeeccCceEEEcCCceEEEEEecCcCcc
Confidence 5558888888 478899999999999999987743
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=248.41 Aligned_cols=267 Identities=16% Similarity=0.251 Sum_probs=228.8
Q ss_pred EEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 107 QWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
++..|++.|-++.+. -. +++++-.+|.|.|||.++...++.+... .++....|-...+.++ |+.|..|++|+.++.
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ 87 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG 87 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence 455689999999994 44 9999999999999999999999999864 5667788888888888 889999999999998
Q ss_pred ccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEE
Q 014104 183 RSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIA 257 (430)
Q Consensus 183 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~ 257 (430)
+.+ +..|.. ....+.+.|..|.+++++.|-+|++||.+.. .+.+++++|..-|++++|+|. +.+++++-|++|+
T Consensus 88 ekV~~FeAH~D-yIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 88 EKVKTFEAHSD-YIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred eeeEEeecccc-ceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 854 444443 3566778888899999999999999999765 688999999999999999974 7999999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCS--RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
+|.+.+..+..++++ |...|.|+.|-+.| .+|++|+.|.+|+|||.++..++.++.+|...|..+. |+|.-..+++
T Consensus 167 VWslgs~~~nfTl~g-HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~-fhp~lpiiis 244 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEG-HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVF-FHPELPIIIS 244 (794)
T ss_pred EEEcCCCCCceeeec-cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEE-ecCCCcEEEE
Confidence 999999999999997 89999999998755 5999999999999999999999999999999999997 9999999999
Q ss_pred EcCCCeEEEEEcCCCceEEEE----------EeccCcceeeeccCCceEEE
Q 014104 336 GGIDGVLRVLDQNTGEVLSRC----------VMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~~~~~----------~~~~~~~~~~~~s~d~~v~~ 376 (430)
||.||+|+||+..+-+...++ ..+.+...++.|..+|.+.+
T Consensus 245 gsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 999999999998876544444 33444445666666666544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=239.84 Aligned_cols=301 Identities=15% Similarity=0.198 Sum_probs=234.6
Q ss_pred HHHHHHHcccchhhcccCCEeEEEEeccccceeEEEecCC---eEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEE
Q 014104 84 LHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG---LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDF 159 (430)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~ 159 (430)
++.+++...+..+.+.. ..+..|.||.+.|.|++-..+ .++||+.||.|++||+...++..++..|. -+.-+++
T Consensus 40 Ey~RALNAtKleR~fak--PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v 117 (433)
T KOG0268|consen 40 EYTRALNATKLERVFAK--PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICV 117 (433)
T ss_pred HHHHHhhhHHHHHHhhc--cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEe
Confidence 44444433333332322 356678999999999998544 89999999999999999999999999886 4666887
Q ss_pred ecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEE
Q 014104 160 DFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239 (430)
Q Consensus 160 ~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 239 (430)
.. +..+.++.|.+|+.|.++..- ....+.......+.....+..+++++. .|.|||.+-..++..+.--.+.|.++
T Consensus 118 ~~-~~~~tvgdDKtvK~wk~~~~p-~~tilg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~sv 193 (433)
T KOG0268|consen 118 TQ-TSFFTVGDDKTVKQWKIDGPP-LHTILGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSV 193 (433)
T ss_pred cc-cceEEecCCcceeeeeccCCc-ceeeeccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEE
Confidence 77 555559999999999988741 111111122222333333444777776 59999998888999998888899999
Q ss_pred EecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecC
Q 014104 240 SLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRIS 316 (430)
Q Consensus 240 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~ 316 (430)
.|+|. ..|++|+.|+.|.+||++++.+++++. ..-.-..++|+|.+-.+++|++|..++.||++. ..++....+|
T Consensus 194 kfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh 271 (433)
T KOG0268|consen 194 KFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH 271 (433)
T ss_pred ecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCccccceeeccccccceehhhhhhcccchhhccc
Confidence 99986 688889899999999999999988876 344678899999888889999999999999997 4677888999
Q ss_pred CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 317 PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
.+.|.++. |||.|+-+++||.|.+|+||.++.+..-..+.. . --
T Consensus 272 vsAV~dVd-fsptG~EfvsgsyDksIRIf~~~~~~SRdiYht--k---------------------------------RM 315 (433)
T KOG0268|consen 272 VSAVMDVD-FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT--K---------------------------------RM 315 (433)
T ss_pred ceeEEEec-cCCCcchhccccccceEEEeecCCCcchhhhhH--h---------------------------------hh
Confidence 99999999 999999999999999999999986643322211 0 01
Q ss_pred CCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 397 PPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 397 ~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..|.||.| |.+++++||+|+.||+|.....++
T Consensus 316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred heeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 46889998 789999999999999999776554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=267.51 Aligned_cols=288 Identities=13% Similarity=0.131 Sum_probs=222.8
Q ss_pred EeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC----e----eEEeeecCCceeEEEEec-CCCEEE-EEeCCeEE
Q 014104 108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY----K----CVEEYSLPNAASLVDFDF-DESKIV-GLIGTRIC 175 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~----~----~~~~~~~~~~~~~~~~~~-~~~~l~-~~~~~~i~ 175 (430)
+.+|.+.|.+++| +++ ++++|+.|++|+|||..+. . ....+.++..+..++|++ ++..|+ ++.|+.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 4569999999999 455 9999999999999997542 1 222334455566788876 466777 88899999
Q ss_pred EEEcCCCccc--ccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-C-CCEEEEE
Q 014104 176 IWRRNGLRSV--FPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-E-DQLIISG 250 (430)
Q Consensus 176 vwd~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~-~~~l~~~ 250 (430)
+||+.+++.+ +..|.+. +..+++.+ .+..|++|+.||+|++||+++++.+..+..+ ..|.++.|+ + +..+++|
T Consensus 559 lWd~~~~~~~~~~~~H~~~-V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 559 VWDVARSQLVTEMKEHEKR-VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEECCCCeEEEEecCCCCC-EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999987643 2333333 23344443 3445999999999999999999988888754 689999996 3 4799999
Q ss_pred eCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC------CceeeeeecCCCceEEE
Q 014104 251 SSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT------MKSLWETRISPNVVYSL 323 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~~~~v~~l 323 (430)
+.||.|++||+++++ .+..+.+ |...|.++.|. ++.+|++++.|++|++||++. .+++..+.+|...+..+
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~-h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIG-HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred eCCCeEEEEECCCCCccceEecC-CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 999999999998765 4566665 88899999997 678999999999999999974 35677899999999999
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
. ++|++.+|++|+.|+.|++|+......+..+....... + .......|...|.+++
T Consensus 715 ~-~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~----------~-------------~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 715 G-LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP----------V-------------SGLEVDDASQFISSVC 770 (793)
T ss_pred E-EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc----------c-------------cccccCCCCcEEEEEE
Confidence 8 99999999999999999999988776655443221100 0 0000123556799999
Q ss_pred E--cCeEEEEeeCCCeEEEEEe
Q 014104 404 V--GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 404 ~--~~~~l~t~~~Dg~v~vw~~ 423 (430)
| ++..|++|+.||.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 9 5789999999999999986
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=238.47 Aligned_cols=279 Identities=18% Similarity=0.231 Sum_probs=238.1
Q ss_pred EEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc
Q 014104 106 DQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
.++.||...|.+++++++ .++..+..+.+++|+..+.+++.++... .+.+..|.|.+++++ |...|.+.++|+....
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 467899999999999665 4444445679999999999999999875 666788999888888 8999999999998876
Q ss_pred c--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC-----Cee--e------EEeecCCCCeEEEEecCC-CEE
Q 014104 184 S--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-----RKC--S------QIIRMHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 184 ~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~--~------~~~~~~~~~i~~~~~~~~-~~l 247 (430)
. ....|.+. ...++..+++..+++|+.|.+|++||..- +.. + ++++ -...|.|+.++|+ .++
T Consensus 446 l~Eti~AHdga-IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~L 523 (888)
T KOG0306|consen 446 LVETIRAHDGA-IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLL 523 (888)
T ss_pred hhhhhhccccc-eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEE
Confidence 4 33445554 45677788888899999999999999641 211 1 1121 3568999999987 899
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
+.+--|.+|++|-+.+.+..-.+.+ |.-||.||..+||++.++||+.|..|++|-+.-|.+...+-+|.+.|.++. |-
T Consensus 524 aVsLLdnTVkVyflDtlKFflsLYG-HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~-F~ 601 (888)
T KOG0306|consen 524 AVSLLDNTVKVYFLDTLKFFLSLYG-HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ-FL 601 (888)
T ss_pred EEEeccCeEEEEEecceeeeeeecc-cccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE-Ec
Confidence 9999999999999999999889988 889999999999999999999999999999999999999999999999999 88
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
|....+.++|.|+.|+-||-..-+.++.+.+|.. .|+|++. +
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~------------------------------------ev~cLav~~~ 645 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHS------------------------------------EVWCLAVSPN 645 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchh------------------------------------eeeeeEEcCC
Confidence 9999999999999999999998899999876554 8888887 6
Q ss_pred CeEEEEeeCCCeEEEEEecC
Q 014104 406 MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~~ 425 (430)
|.+++|+|.|.+||+|.-..
T Consensus 646 G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 646 GSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CCeEEeccCCceeEeeeccC
Confidence 88999999999999998543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=218.82 Aligned_cols=244 Identities=16% Similarity=0.187 Sum_probs=215.2
Q ss_pred eEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 104 DIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
=+.+|.||.++|+....+.+ ..++++.|-+.++||.-+|..++.|.+.+-+..++|+.|.++|+ ++.+.-+++||++
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 47799999999999999766 88999999999999999999999999989999999999999999 8889999999999
Q ss_pred CCcccc---cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEE
Q 014104 181 GLRSVF---PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIA 257 (430)
Q Consensus 181 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~ 257 (430)
..+... ..+.+.+ .-+-|+..+..+++++.|++|++||.++++.++.+. .+.+|+++.++++..+++....+.|+
T Consensus 131 ~p~App~E~~ghtg~I-r~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~ 208 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGI-RTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVK 208 (334)
T ss_pred CCCCCchhhcCCCCcc-eeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeE
Confidence 877443 3344443 234455556669999999999999999999999997 57889999999886677777889999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee-ecCCCceEEEEEeeCCCCeEEEE
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET-RISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+||..+-..++.++ ....|.+..++|+...+++|+.|..++.||..+++.+..+ ++|.++|.++. |+|+|..-++|
T Consensus 209 Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVr-FSPdGE~yAsG 285 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVR-FSPDGELYASG 285 (334)
T ss_pred Eeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEE-ECCCCceeecc
Confidence 99999999988887 4568999999999999999999999999999999999885 89999999999 99999999999
Q ss_pred cCCCeEEEEEcCCCce
Q 014104 337 GIDGVLRVLDQNTGEV 352 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~ 352 (430)
|.||+|++|.+..++.
T Consensus 286 SEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCceEEEEEecCCCc
Confidence 9999999999876554
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=226.54 Aligned_cols=241 Identities=19% Similarity=0.309 Sum_probs=213.0
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCC-CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEG-YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
....|+||++.|..+.|. .| ++++++.|-.+++||.++ .++++...+| +.+..+.|-|.|++++ ++.|.+|+.|+
T Consensus 142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 356789999999999994 44 999999999999999987 5667776666 5677799999999999 88999999999
Q ss_pred cCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-----------C-
Q 014104 179 RNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-----------D- 244 (430)
Q Consensus 179 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-----------~- 244 (430)
+.++..+ +..+.. -+..+....++..+++++.|.++++|-+.++++...++.|.-+|.+++|.| +
T Consensus 222 ~~tg~cv~t~~~h~e-wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~ 300 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSE-WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS 300 (406)
T ss_pred cccceeEEeccCchH-hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC
Confidence 9998754 444444 334555555666699999999999999999999999999999999999854 1
Q ss_pred ----CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCce
Q 014104 245 ----QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV 320 (430)
Q Consensus 245 ----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 320 (430)
.++.+++.|++|++||+.++.++.++.+ |...|..++|+|.|++|+++..|+++++||++++++...+..|..-|
T Consensus 301 ~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g-hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfv 379 (406)
T KOG0295|consen 301 TNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG-HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFV 379 (406)
T ss_pred CCCccEEEeecccceEEEEeccCCeEEEEEec-ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCccee
Confidence 4899999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 321 YSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 321 ~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
+++. |+.+-.++++|+-|-++++|.-
T Consensus 380 t~lD-fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLD-FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEe-cCCCCceEEeccccceeeeeec
Confidence 9999 9999999999999999999973
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=233.83 Aligned_cols=237 Identities=15% Similarity=0.260 Sum_probs=206.2
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
..+..+.|.|+|+.|+ ++..|.+.+|+..+-. .+...|+.. +..+.++.++..+++|..+|.|++|+..- +.++.
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~-Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~ 174 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSP-VRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKI 174 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhccc-ceeEEEccCCCEEEEcCCCceEEecccch-hhhHH
Confidence 4677899999999998 8999999999986543 345555544 45677778888899999999999999753 44555
Q ss_pred eecCC-CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 229 IRMHC-APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 229 ~~~~~-~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+..|. ..|++++|+|+ ..|+++++||+|+|||....+....+.+ |.-.|.+++|+|...++++|+.|..|++||.++
T Consensus 175 ~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-HgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-HGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-CCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 65555 89999999975 7999999999999999999888888887 888999999999999999999999999999999
Q ss_pred CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCc
Q 014104 307 MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386 (430)
Q Consensus 307 ~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~ 386 (430)
++++.++.+|...|..+. |+|++++|+++|.|..++++|+++.+.++++++
T Consensus 254 g~cl~tlh~HKntVl~~~-f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~---------------------------- 304 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVK-FNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG---------------------------- 304 (464)
T ss_pred cchhhhhhhccceEEEEE-EcCCCCeeEEccCCceEEEEehhHhHHHHHhhc----------------------------
Confidence 999999999999999999 999999999999999999999998777777765
Q ss_pred ccccCCCCCCCCeeEEEE---cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 387 CIDRIPKTIRPPITCLAV---GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~---~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|...|++++| ....|++|+.||.|..|.+...++
T Consensus 305 --------Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p 341 (464)
T KOG0284|consen 305 --------HKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP 341 (464)
T ss_pred --------chhhheeeccccccccceeeccCCCceEEEecccccc
Confidence 5558999988 478899999999999999885444
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=211.76 Aligned_cols=293 Identities=18% Similarity=0.237 Sum_probs=235.4
Q ss_pred EEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 107 QWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
.|+||..+++.+.++ +| +|+|++.|.++.||-..+|+.+.++.+| +.+.++.++.+.+.++ ++.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 478999999999995 55 9999999999999998899999999998 5677899999999999 999999999999999
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEec-----CCeEEEEECC-------CCeeeEEeecCCCCeEEEEecC-CCEEEE
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCE-----DGTARVFDMY-------SRKCSQIIRMHCAPVTSLSLSE-DQLIIS 249 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~-------~~~~~~~~~~~~~~i~~~~~~~-~~~l~~ 249 (430)
+.+.....+..+..+.+.+.+..++.... .+.|.++|++ ..+++..+..+.+.++.+-|.| +++|++
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 99888888888888888888887555543 4789999998 4456778888889999999997 589999
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
|..||.|..||+++|+....-...|...|+.+.++|+..++++++.|.+-++||+++.+.++++.. ..+|++.+ ++|.
T Consensus 165 Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aa-isP~ 242 (327)
T KOG0643|consen 165 GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAA-ISPL 242 (327)
T ss_pred ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-ccccccee-cccc
Confidence 999999999999998766555444888999999999999999999999999999999999988875 47899998 8898
Q ss_pred CCeEEEEcCCCeEEEE--EcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 330 TSTLVVGGIDGVLRVL--DQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
...++.|+.....-|= +.+.|+....+ .++..++++.+. ++|-++|++|+| +
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArF-----------------------yh~i~eEEigrv-kGHFGPINsvAfhPd 298 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARF-----------------------YHLIFEEEIGRV-KGHFGPINSVAFHPD 298 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhH-----------------------HHHHHHHHhccc-cccccCcceeEECCC
Confidence 8878777643322211 11111111111 111111122222 578899999999 6
Q ss_pred CeEEEEeeCCCeEEEEEecC
Q 014104 406 MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~~ 425 (430)
|+..++||+||.||+.-++.
T Consensus 299 GksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 299 GKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CcccccCCCCceEEEEEecc
Confidence 89999999999999987754
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-31 Score=213.62 Aligned_cols=258 Identities=15% Similarity=0.208 Sum_probs=217.9
Q ss_pred HHHcccchhhcccCCE--------------eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC
Q 014104 88 ELAMKHHRFALEEGRI--------------DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP 151 (430)
Q Consensus 88 ~~~~~~~~~~~~~~~~--------------~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 151 (430)
...|.+.+..+..|+. ....++||.++|..+.+ .++ .+++++.|.+|+.||.++|+.++.++.|
T Consensus 52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h 131 (338)
T KOG0265|consen 52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH 131 (338)
T ss_pred EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccc
Confidence 4566777777777765 24567899999999999 455 9999999999999999999999999988
Q ss_pred Cc-eeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 152 NA-ASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 152 ~~-~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
.. +.++.-+.-|..++ ++.|+++++||+.+...+...........++|...+..+++|+-|+.|++||++.+....+
T Consensus 132 ~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ 211 (338)
T KOG0265|consen 132 TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYT 211 (338)
T ss_pred cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEE
Confidence 55 34455444566666 6779999999999887665555555566677777788899999999999999999999999
Q ss_pred eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC----CceeEEEecCC---CCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 229 IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS----DQRVATLRSTD---CTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 229 ~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
+.+|.++|+.+..+++ .++.+-+.|.++++||++. .+++..+.++. ......++|+|+++.+.+|+.|..++
T Consensus 212 lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vy 291 (338)
T KOG0265|consen 212 LSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVY 291 (338)
T ss_pred eecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEE
Confidence 9999999999999975 8999999999999999984 34466666521 22566789999999999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+||......+..+.+|.+.|.+++ |+|....|.+++.|.+|++=+
T Consensus 292 vwd~~~r~~lyklpGh~gsvn~~~-Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 292 VWDTTSRRILYKLPGHYGSVNEVD-FHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred EeecccccEEEEcCCcceeEEEee-ecCCCcEEEEeccCceeEeec
Confidence 999999899999999999999999 999999999999999998743
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=242.45 Aligned_cols=242 Identities=21% Similarity=0.339 Sum_probs=205.8
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc-ccccCCCC--ceeeeeEEEEcCCceEEEecCCeEEEEEC-CCCeee
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREG--TFMKGLCMRYFDPEAVVGCEDGTARVFDM-YSRKCS 226 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~ 226 (430)
..+..+.|+++|+.++ ++.++.+++|+..+.. .......+ ..+..+++.+++..+++++.|+++++||+ ..+..+
T Consensus 160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~ 239 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNL 239 (456)
T ss_pred CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEE
Confidence 5677799999999988 7899999999996665 12222222 33556777788888999999999999999 556899
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+++++|...|++++|+|. +++++|+.|++|++||+++++++..+.+ |...|++++|++++++|++++.|+.|++||+.
T Consensus 240 ~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 240 KTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG-HSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred EEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-cCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 999999999999999976 7999999999999999999999999998 88899999999999999999999999999999
Q ss_pred CCc--eeeeeecCCCc--eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 306 TMK--SLWETRISPNV--VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 306 ~~~--~~~~~~~~~~~--v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
++. ++..+..+... ++++. |+|++.++++++.|+.+++||+..+..+..+..|....
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~-fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~------------------ 379 (456)
T KOG0266|consen 319 TGSKLCLKLLSGAENSAPVTSVQ-FSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV------------------ 379 (456)
T ss_pred CCceeeeecccCCCCCCceeEEE-ECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcc------------------
Confidence 998 56777776655 88888 99999999999999999999999999999998876620
Q ss_pred ccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+.+... ++.++++|+.|+.|.+|++.++..
T Consensus 380 ---------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~ 413 (456)
T KOG0266|consen 380 ---------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI 413 (456)
T ss_pred ---------------eeEecccccCCCCeEEEEeCCceEEEEeCCccch
Confidence 02222222 588899999999999999997653
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=230.44 Aligned_cols=320 Identities=17% Similarity=0.199 Sum_probs=246.1
Q ss_pred EeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
...-++.||..+|+++.|+ .| .|+|||.|+.|.+||+-...-+..+.+|.. +.-.-|..+.+.++ .+.|+.|++||
T Consensus 98 ~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~Wd 177 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWD 177 (888)
T ss_pred ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEe
Confidence 3456789999999999995 45 999999999999999998788888888744 44455666667777 88999999999
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC------------------------CeeeE-------
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS------------------------RKCSQ------- 227 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------------------------~~~~~------- 227 (430)
+++... +..+-.+...+.+++..+..+++++.|+.+++|++.. ++.+.
T Consensus 178 L~tqhC-f~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~ 256 (888)
T KOG0306|consen 178 LETQHC-FETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSD 256 (888)
T ss_pred ccccee-eeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcc
Confidence 998763 3334444445566666667799999999999998810 00000
Q ss_pred --------------------------------------------------------------------------------
Q 014104 228 -------------------------------------------------------------------------------- 227 (430)
Q Consensus 228 -------------------------------------------------------------------------------- 227 (430)
T Consensus 257 r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~ 336 (888)
T KOG0306|consen 257 RFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTEN 336 (888)
T ss_pred cEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcce
Confidence
Q ss_pred -------------------------------EeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCC
Q 014104 228 -------------------------------IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT 276 (430)
Q Consensus 228 -------------------------------~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 276 (430)
.+.+|...|.+++++.++.++..+..+.+++|+..+.++++++.. +
T Consensus 337 ~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~---~ 413 (888)
T KOG0306|consen 337 TLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC---G 413 (888)
T ss_pred eEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc---c
Confidence 012567778889998776666666678999999999999999974 3
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC-----Cc
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT-----GE 351 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~-----~~ 351 (430)
.+.+..|-|.++++++|...|.+.+||+.+...+.+.++|.+.+++++ .+||++.+++||.|.+|++||..- |.
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~-~~pD~~g~vT~saDktVkfWdf~l~~~~~gt 492 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSIS-LSPDNKGFVTGSADKTVKFWDFKLVVSVPGT 492 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeee-ecCCCCceEEecCCcEEEEEeEEEEeccCcc
Confidence 899999999999999999999999999999999999999999999999 999999999999999999999751 22
Q ss_pred eEEEEEec-------cCcceeeeccCCceEEEee-----ccccc-CCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 352 VLSRCVMD-------IGSASSSSNKVSGVIERNE-----GRRLS-AGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 352 ~~~~~~~~-------~~~~~~~~~s~d~~v~~~~-----~~~~~-~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
..+.+..+ ++.+..+..||||.+.... +.-+. ...++....-+|.-||.|+.+ |++.++|||.|.
T Consensus 493 ~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADK 572 (888)
T KOG0306|consen 493 QKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADK 572 (888)
T ss_pred cceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCC
Confidence 22222222 3345778888888653211 11000 112233334689999999877 799999999999
Q ss_pred eEEEEEecCCC
Q 014104 417 YIRLWKFNYSD 427 (430)
Q Consensus 417 ~v~vw~~~~~~ 427 (430)
.|+||-++-|+
T Consensus 573 nVKiWGLdFGD 583 (888)
T KOG0306|consen 573 NVKIWGLDFGD 583 (888)
T ss_pred ceEEeccccch
Confidence 99999988774
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=242.70 Aligned_cols=247 Identities=20% Similarity=0.281 Sum_probs=212.7
Q ss_pred eEEE-EeccccceeEEEec--CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQ-WKAHSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~-l~~h~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.+.. +.||.+.|.+++++ ++++++|+.|.++++||..+|++...+.+| ...+.++...+..++ |+.|.+|++|++
T Consensus 240 ~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh-~stv~~~~~~~~~~~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 240 LILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH-TSSVRCLTIDPFLLVSGSRDNTVKVWDV 318 (537)
T ss_pred EEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC-CceEEEEEccCceEeeccCCceEEEEec
Confidence 3444 99999999999997 559999999999999999999999999976 334445555666666 789999999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vw 259 (430)
+++..+..... +...+.++...++.+++|+.||+|++||+.+++++..+.+|...|.++.+.+.+.+++|+.|++|++|
T Consensus 319 ~n~~~l~l~~~-h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvW 397 (537)
T KOG0274|consen 319 TNGACLNLLRG-HTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVW 397 (537)
T ss_pred cCcceEEEecc-ccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEee
Confidence 98875432222 55566888888899999999999999999999999999999999999988654789999999999999
Q ss_pred eCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec-CCCceEEEEEeeCCCCeEEEEc
Q 014104 260 GLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI-SPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 260 d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
|+++. +++.++.+ |..-+..+.+ .+++|++++.|++|++||..+++++..+.+ |...|..++ +. ...+++++
T Consensus 398 dl~~~~~c~~tl~~-h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~-~~--~~~il~s~ 471 (537)
T KOG0274|consen 398 DLRTKRKCIHTLQG-HTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALA-LG--KEEILCSS 471 (537)
T ss_pred cCCchhhhhhhhcC-Cccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEee-cC--cceEEEEe
Confidence 99999 99999987 7777776666 678999999999999999999999999998 668888887 43 46788999
Q ss_pred CCCeEEEEEcCCCceEEEEEe
Q 014104 338 IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.||++++||++++++.+.+..
T Consensus 472 ~~~~~~l~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIRTLLS 492 (537)
T ss_pred cCCeeEEEecccCchhhhhhh
Confidence 999999999999999887743
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=204.85 Aligned_cols=243 Identities=16% Similarity=0.228 Sum_probs=200.3
Q ss_pred Eeeec-CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC
Q 014104 146 EEYSL-PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 146 ~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 221 (430)
+.+.. .+++..+.|+-+|++.+ ++.|.+|++|+...+..+ ...|.. .+.......++..+++++.|..|.+||+.
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~-EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-EVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCc-eeeeccccccccccccCCCCceEEEEEcc
Confidence 34444 36778899999999998 889999999999887643 333333 33345556667779999999999999999
Q ss_pred CCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC--CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 014104 222 SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS--DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 222 ~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
+|+.++.+.+|.+.|+.++|+.+ ..+++|+.|.++++||.++ .++++.+.. ....|.++.. .+..+++|+.||+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a~D~V~Si~v--~~heIvaGS~DGt 166 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-AKDGVSSIDV--AEHEIVAGSVDGT 166 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-hcCceeEEEe--cccEEEeeccCCc
Confidence 99999999999999999999965 8999999999999999885 456777776 5668999988 5678999999999
Q ss_pred EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEee
Q 014104 299 ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
++.||++.|+....+-+| +|+++. |+++++..++++.|+++++-|-.+|++++.+++|.+..
T Consensus 167 vRtydiR~G~l~sDy~g~--pit~vs-~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~e--------------- 228 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYFGH--PITSVS-FSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNME--------------- 228 (307)
T ss_pred EEEEEeecceeehhhcCC--cceeEE-ecCCCCEEEEeeccceeeecccchhHHHHHhcccccce---------------
Confidence 999999999888776664 799998 99999999999999999999999999999999877621
Q ss_pred cccccCCcccccCCCCCCCCee-EEEEcCeEEEEeeCCCeEEEEEecCCCc
Q 014104 379 GRRLSAGCCIDRIPKTIRPPIT-CLAVGMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 379 ~~~~~~~~~~~~~~~~h~~~v~-~v~~~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+. |+.-....+++|++||.|.+||+..+..
T Consensus 229 ------------------ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 229 ------------------YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred ------------------eeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 0111 1222467799999999999999977653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.1e-30 Score=235.24 Aligned_cols=300 Identities=17% Similarity=0.243 Sum_probs=236.3
Q ss_pred EEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 107 QWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
.|+..+..|-.++|. .. +++++-..|.|++||..-+.++..|..| +++..++|+|+...++ |+.|-.|++|+.++.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 355567788899994 44 9999999999999999999999999987 5677799999999999 888899999999998
Q ss_pred cccccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEE
Q 014104 183 RSVFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vw 259 (430)
+.++... +|. +..+.+...-|.++++|.|.+|+||+.++++++..+.+|.--|+|..|+|. ++++++|-|.+|+||
T Consensus 84 rclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 RCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred eehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 8665432 222 233334444455999999999999999999999999999999999999985 899999999999999
Q ss_pred eCCCCc-----------------------------eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--
Q 014104 260 GLSSDQ-----------------------------RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK-- 308 (430)
Q Consensus 260 d~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-- 308 (430)
|+.--+ ..+.+++ |+..|..++|+|.-.++++|+.|+.|++|.+...+
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc-cccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 985210 1133444 88899999999999999999999999999987543
Q ss_pred eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccc
Q 014104 309 SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI 388 (430)
Q Consensus 309 ~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~ 388 (430)
.+.+.++|.+.|.++. |+|....+++.|.|++|+|||+...+.++++.-..+...+++..+...++.
T Consensus 242 EvDtcrgH~nnVssvl-fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfA------------ 308 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVL-FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFA------------ 308 (1202)
T ss_pred eehhhhcccCCcceEE-ecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceee------------
Confidence 4567889999999998 999999999999999999999999999999876666554444444444321
Q ss_pred ccCCCCCCCCe---------eEEEEcCeEEEEeeCCCeEEEEEecCC
Q 014104 389 DRIPKTIRPPI---------TCLAVGMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 389 ~~~~~~h~~~v---------~~v~~~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+|.+.+ .+.+.+++.|.-.- |..|+.+|+.+.
T Consensus 309 ----AgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~ 350 (1202)
T KOG0292|consen 309 ----AGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQ 350 (1202)
T ss_pred ----eecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeecccc
Confidence 2222221 12334444444444 778888888764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=213.80 Aligned_cols=240 Identities=15% Similarity=0.153 Sum_probs=200.7
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.+..+.||.+.|+|+.|+ +| +||||+.+|.|+||+..++.....+... +...-+.|+|.+..|+ |+.||.+.+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 567889999999999994 66 9999999999999999999888888643 5566699999999888 999999999999
Q ss_pred CCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--------------------------
Q 014104 180 NGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-------------------------- 231 (430)
Q Consensus 180 ~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------- 231 (430)
..+. .++..+... ...-.+.++++.++++..||+|++||+.+++++..+..
T Consensus 178 p~~~~~kv~~Gh~~~-ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSP-CTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCcceeeEecCCCCC-cccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 8843 355554443 33456777888899999999999999999987766530
Q ss_pred -------------------------CCCCeEEEEecC---C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEE
Q 014104 232 -------------------------HCAPVTSLSLSE---D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLC 282 (430)
Q Consensus 232 -------------------------~~~~i~~~~~~~---~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 282 (430)
+...+.++.+.| . .+.++|+-||+|.+||+.+.+..+.+. |..+|..+.
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~--he~~V~~l~ 334 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE--HEDGVTKLK 334 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc--CCCceEEEE
Confidence 111122333332 2 467889999999999999888777776 888999999
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 283 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
|-+ ..+|++++.+|.|+.||.++|+++.++.+|...|.+++ ++|+.++++|+|.|++.+||++.
T Consensus 335 w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~-ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFA-LSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEE-EcCCCcEEEEecCCCeEEEEecC
Confidence 988 68999999999999999999999999999999999999 99999999999999999999875
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=203.12 Aligned_cols=249 Identities=16% Similarity=0.183 Sum_probs=212.9
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee--cC-CceeEEEEec-CCCEEE-EEeCCeEEEEE
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS--LP-NAASLVDFDF-DESKIV-GLIGTRICIWR 178 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--~~-~~~~~~~~~~-~~~~l~-~~~~~~i~vwd 178 (430)
+.+++|...|.+++| .+| .|++|+.|+++.+|+++..+...... +| ..+.-++++| ++..++ ++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 467889999999999 466 99999999999999998876554433 34 3455578877 455566 88899999999
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEE
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIA 257 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~ 257 (430)
...++.+............++.+.+.++++++.|..|...|.++.+.....+ ....+.-+.|+ ++++++.....|+|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 9998876655554445568899999999999999999999999887776655 44567788888 557777777789999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
|......+++..++. |.....|+.|+|+|++||+|+.|..+.+||+...-+++.+..+.=+|..+. ||.+|++||+||
T Consensus 173 ILsypsLkpv~si~A-H~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlS-FS~dg~~lASaS 250 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKA-HPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLS-FSHDGRMLASAS 250 (313)
T ss_pred EEecccccccccccc-CCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEE-eccCcceeeccC
Confidence 999999999999998 888999999999999999999999999999999989999999999999999 999999999999
Q ss_pred CCCeEEEEEcCCCceEEEEE
Q 014104 338 IDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~ 357 (430)
+|-.|-|=++++|..+..++
T Consensus 251 EDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ccceEEeEecccCCeEEEee
Confidence 99999999999999998876
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=227.62 Aligned_cols=274 Identities=18% Similarity=0.269 Sum_probs=223.4
Q ss_pred EeEEEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEE--eeecCCc-eeE-EEEec-CCC-EEEEEeCCeEE
Q 014104 103 IDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVE--EYSLPNA-ASL-VDFDF-DES-KIVGLIGTRIC 175 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~-~~~-~~~~~-~~~-~l~~~~~~~i~ 175 (430)
..-+.+.||...|..+++-++ .++++|.||++++|+-..++.+. .+.++.+ +.. +++.+ ++. .+.++.|..+.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 455689999999999998555 89999999999999987666554 3444433 222 55554 333 44499999999
Q ss_pred EEEcCCCccc--ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeC
Q 014104 176 IWRRNGLRSV--FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 176 vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 252 (430)
+|...+.... +..|. ..+++++..... +++|+.|.++++|-. +++...+.+|+.+|++++.-|.+.+++|+.
T Consensus 85 v~~~~~~~P~~~LkgH~---snVC~ls~~~~~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~vTgsa 159 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHK---SNVCSLSIGEDGTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYVTGSA 159 (745)
T ss_pred EEecCCCCchhhhhccc---cceeeeecCCcCceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEEeccC
Confidence 9999987743 44444 445777755444 799999999999985 677778999999999999998889999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
|.+|++|.- ++.+++|.+ |..-|+.+++-|++ .+++++.||.|+.|++ +++.+.++.+|.+-|+++. ...++..
T Consensus 160 DKtIklWk~--~~~l~tf~g-HtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis-~~~~~~~ 233 (745)
T KOG0301|consen 160 DKTIKLWKG--GTLLKTFSG-HTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSIS-MALSDGL 233 (745)
T ss_pred cceeeeccC--Cchhhhhcc-chhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEE-ecCCCCe
Confidence 999999985 788999998 99999999999765 4778899999999999 6999999999999999999 7788899
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEE
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVT 411 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t 411 (430)
++++++|+++++|+.. ++.+.+..... .|+++.+ .+.-+++
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~lPtt------------------------------------siWsa~~L~NgDIvv 275 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITLPTT------------------------------------SIWSAKVLLNGDIVV 275 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEecCcc------------------------------------ceEEEEEeeCCCEEE
Confidence 9999999999999976 77777764332 6777776 4566999
Q ss_pred eeCCCeEEEEEecC
Q 014104 412 THNSKYIRLWKFNY 425 (430)
Q Consensus 412 ~~~Dg~v~vw~~~~ 425 (430)
|+.||.||||..+.
T Consensus 276 g~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 276 GGSDGRVRVFTVDK 289 (745)
T ss_pred eccCceEEEEEecc
Confidence 99999999998763
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.4e-30 Score=204.28 Aligned_cols=256 Identities=17% Similarity=0.257 Sum_probs=209.2
Q ss_pred Hcccchhhccc-CCEeEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEE
Q 014104 90 AMKHHRFALEE-GRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKI 166 (430)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l 166 (430)
+.++....|.. .+..+.++.||++.|+|+..+.. +++||+.|.++++||+++|+++..++.+..+..+.|+++|+++
T Consensus 29 aKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 29 AKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLI 108 (327)
T ss_pred cCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEE
Confidence 33344455555 77899999999999999999543 9999999999999999999999999999999999999999999
Q ss_pred EEEeC------CeEEEEEcCCC-------ccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-eeEEee
Q 014104 167 VGLIG------TRICIWRRNGL-------RSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIR 230 (430)
Q Consensus 167 ~~~~~------~~i~vwd~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~ 230 (430)
+.+.| +.|.++|+... +.. ...+. .......|.+.++.|++|..||.|..||+++|+ .+...+
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~-skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~ 187 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD-SKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE 187 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc-cceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh
Confidence 86554 56899998732 222 22222 334556777888889999999999999999984 556667
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE--E-------
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA--S------- 300 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i--~------- 300 (430)
.|...|+.+.++++ .++++++.|.+-++||.++-+.++++. ...+|.+.+++|...+++.|+..... .
T Consensus 188 ~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~G 265 (327)
T KOG0643|consen 188 EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAG 265 (327)
T ss_pred hhccccccccccCCcceEEecccCccceeeeccceeeEEEee--ecccccceecccccceEEecCCceeeeeeeeccccc
Confidence 89999999999987 899999999999999999999999998 56799999999988888876543222 2
Q ss_pred -----EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 301 -----CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 301 -----i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
.|++-..+.+..+++|-++|++++ |+|+|+..++|+.||.|++.-.+.
T Consensus 266 KFEArFyh~i~eEEigrvkGHFGPINsvA-fhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 266 KFEARFYHLIFEEEIGRVKGHFGPINSVA-FHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred chhhhHHHHHHHHHhccccccccCcceeE-ECCCCcccccCCCCceEEEEEecc
Confidence 222222345677899999999999 999999999999999999986653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-31 Score=216.13 Aligned_cols=275 Identities=16% Similarity=0.231 Sum_probs=224.7
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee---------cCCceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---------LPNAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
|....+.|..| ||| +|++|+.||-|.+||..+|+..+.++ ....+.+++|+.|...++ |+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 44566788888 677 99999999999999999988765543 246788899999999999 9999999999
Q ss_pred EcCCCcccccCCCCceeeeeE--EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 178 RRNGLRSVFPSREGTFMKGLC--MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
.+.++..+......|...+.| ++.++..+++++.|.++++.-+.+|++++.+++|.+.|+...|.++ ..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999998765444344333344 4445566999999999999999999999999999999999999965 8999999999
Q ss_pred eEEEEeCCCCceeEEEecC-CCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCC---CceEEEEEeeCC
Q 014104 255 SIAISGLSSDQRVATLRST-DCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISP---NVVYSLQHLQND 329 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---~~v~~l~~~s~~ 329 (430)
+|++|+..+.+++.+|+.. .+.+|.++..-|.. ..++++....+|+|.++. |+.+..+.... +...+.. .+|.
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~-lSpk 448 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI-LSPK 448 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE-ecCC
Confidence 9999999999999998753 23378888877754 578888889999999987 77777765432 3333444 8999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
|.++++.+.|+.++.|.+.+|+..+++..|.. .|..++- +.+
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEk------------------------------------dvIGl~HHPHqN 492 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK------------------------------------DVIGLTHHPHQN 492 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccc------------------------------------cccccccCcccc
Confidence 99999999999999999999999999987655 4444554 356
Q ss_pred EEEEeeCCCeEEEEE
Q 014104 408 KVVTTHNSKYIRLWK 422 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~ 422 (430)
.+++=++||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 689999999999995
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=223.29 Aligned_cols=276 Identities=17% Similarity=0.270 Sum_probs=226.7
Q ss_pred EEEEeccccceeEEEe-cC-CeEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 105 IDQWKAHSVGVDQCRM-KR-GLILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
...+..|.+.|..+.| ++ +.|++|+.|..|++|+....+ .+.++.+. +.+..+.|.+++..++ ++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 3456789999999999 45 599999999999999987765 55666654 5677899999999888 88999999999
Q ss_pred cCCCcc--cccCCCCceeeeeEEEE--cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCC
Q 014104 179 RNGLRS--VFPSREGTFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLG 254 (430)
Q Consensus 179 ~~~~~~--~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg 254 (430)
++..+. ++.+|.+.+ .+..+ ....+++|+.|.+|+.||+....|.+++- ....+..+..+ ...+++|..|+
T Consensus 248 vd~~r~~~TLsGHtdkV---t~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~-~~~~~SgH~Dk 322 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKV---TAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS-ISDVISGHFDK 322 (459)
T ss_pred ccchhhhhhhcccccce---eeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec-ceeeeeccccc
Confidence 998773 455555543 44433 33339999999999999999988887765 34456666664 45788999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC----CceEEEEEeeCCC
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP----NVVYSLQHLQNDT 330 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~v~~l~~~s~~~ 330 (430)
+|++||++++......+. .+.|+++..+++|..|.+.+.|.++.+.|+++.+....+.... ...+.+. |||++
T Consensus 323 kvRfwD~Rs~~~~~sv~~--gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv-fSpd~ 399 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPL--GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV-FSPDG 399 (459)
T ss_pred ceEEEeccCCceeeEeec--CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE-ECCCC
Confidence 999999999999999884 4599999999999999999999999999999988777665321 3366676 99999
Q ss_pred CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeE
Q 014104 331 STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKK 408 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~ 408 (430)
.|+++||.||.|+||++.++++...+..... .+.|++++|+ |..
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s----------------------------------~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTS----------------------------------NAAITSLSWNPSGSG 445 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCC----------------------------------CcceEEEEEcCCCch
Confidence 9999999999999999999999998876433 1379999995 899
Q ss_pred EEEeeCCCeEEEEE
Q 014104 409 VVTTHNSKYIRLWK 422 (430)
Q Consensus 409 l~t~~~Dg~v~vw~ 422 (430)
+++++.++.+.+|.
T Consensus 446 Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 446 LLSADKQKAVTLWT 459 (459)
T ss_pred hhcccCCcceEecC
Confidence 99999999999994
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=225.10 Aligned_cols=251 Identities=14% Similarity=0.198 Sum_probs=213.3
Q ss_pred eEEEEeccccceeEEEe-c-CCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.++.+.-..-+|++..| . .+++++|+.|..|+||+.++++.++.|+.| +-+.+++.+|..-+++ ++.|-.|++||.
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w 126 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW 126 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence 56777778889999888 3 459999999999999999999999999987 6688899999988888 777889999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCc---eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC---CEEEEEeCC
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLIISGSSL 253 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~d 253 (430)
+.+-......++|...++++++++++ +++++.|++|++|.+.+..+..++++|...|+|+.+-++ .++++|++|
T Consensus 127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 98764444444444444555544433 999999999999999999999999999999999999965 499999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
.++++||..+..+++++++ |...|..+.|+|.-..+++|+.||+++||+..+.+...++.-..+.+++++ ..+.+..+
T Consensus 207 ~tiKvWDyQtk~CV~TLeG-Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~-~~k~~~~i 284 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEG-HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIA-AHKGDGKI 284 (794)
T ss_pred ceEEEeecchHHHHHHhhc-ccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEe-ecCCCCeE
Confidence 9999999999999999998 888999999999999999999999999999999988888887889999999 77777888
Q ss_pred EEEcCCCeEEEEEcCCCceEEEEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
+.|...|.|. ..+-.+++..++.
T Consensus 285 ~vG~Deg~i~-v~lgreeP~vsMd 307 (794)
T KOG0276|consen 285 AVGFDEGSVT-VKLGREEPAVSMD 307 (794)
T ss_pred EEeccCCcEE-EEccCCCCceeec
Confidence 8887777554 4455455554443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=248.33 Aligned_cols=256 Identities=17% Similarity=0.253 Sum_probs=203.1
Q ss_pred CCeEEEEecCCCeeEEeee------cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc--------cccCCCCceee
Q 014104 131 DKVMRLWSLEGYKCVEEYS------LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--------VFPSREGTFMK 195 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~--------~~~~~~~~~~~ 195 (430)
+|.+++|+..+.+....+. +.+.+..++|++++++++ ++.|+.|++|+.+.... ...........
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 6778999888765544433 234567799999999998 88899999999864210 11111112233
Q ss_pred eeEEEEc-CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 196 GLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 196 ~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
.+++.+. +..+++++.||+|++||+.+++.+..+.+|.+.|++++|+| + .+|++|+.|++|++||++++..+..+..
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 3455443 45599999999999999999999999999999999999995 4 7899999999999999999999888874
Q ss_pred CCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCc-eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 273 TDCTGIKTLCYN-PCSRLVFAGTTAGYASCWDLRTMK-SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 273 ~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
...+.++.|+ ++|.+|++|+.||.|++||+++.+ .+..+.+|...|.++. |. ++.+|++++.|++|++||+..+
T Consensus 617 --~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~-f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 617 --KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR-FV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred --CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEE-Ee-CCCEEEEEECCCEEEEEeCCCC
Confidence 3579999995 578999999999999999998765 5677889999999999 75 6789999999999999999743
Q ss_pred ------ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEE
Q 014104 351 ------EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 351 ------~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~ 422 (430)
.++..+ .+|...++++++ ++++|++|+.|+.|++|+
T Consensus 693 ~~~~~~~~l~~~------------------------------------~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~ 736 (793)
T PLN00181 693 ISGINETPLHSF------------------------------------MGHTNVKNFVGLSVSDGYIATGSETNEVFVYH 736 (793)
T ss_pred ccccCCcceEEE------------------------------------cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEE
Confidence 233333 345667788877 588999999999999999
Q ss_pred ecCC
Q 014104 423 FNYS 426 (430)
Q Consensus 423 ~~~~ 426 (430)
...+
T Consensus 737 ~~~~ 740 (793)
T PLN00181 737 KAFP 740 (793)
T ss_pred CCCC
Confidence 7644
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-28 Score=198.63 Aligned_cols=284 Identities=16% Similarity=0.226 Sum_probs=228.1
Q ss_pred EEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEe--CCeEEEEE
Q 014104 105 IDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLI--GTRICIWR 178 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~--~~~i~vwd 178 (430)
.+.|..-.+.|+++.|+ +| ++++++.|-++++||..+++.++++..+ -++..++|......++ ++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 34566678899999994 55 8999999999999999999999999876 4567788888777777 555 78999999
Q ss_pred cCCCcc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 179 RNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 179 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
+.+.+. .+.+|...+ ..+++++.++.+++++.|++|++||++..++...+.....+ .++|.|. -++|++...+.
T Consensus 87 l~dNkylRYF~GH~~~V-~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRV-NSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSEL 163 (311)
T ss_pred eecCceEEEcCCCCceE-EEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCe
Confidence 998874 456665554 55788888888999999999999999988888777644333 5788876 56667766669
Q ss_pred EEEEeCCCC--ceeEEEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCc--eEEEEEeeCC
Q 014104 256 IAISGLSSD--QRVATLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNV--VYSLQHLQND 329 (430)
Q Consensus 256 i~vwd~~~~--~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--v~~l~~~s~~ 329 (430)
|++||++.- .+..++.- ......+.|.|+|+|+.++.++..+.+++.|.-+|..+..+..+... +..-+.|+||
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 999999853 33333332 23458899999999999999999999999999999998888877632 3333359999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKV 409 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l 409 (430)
++++++|+.||+|.+|++++|+.+..+.+. +..++.|+.|++++.
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-----------------------------------~~~~~~~~~fnP~~~ 288 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGP-----------------------------------NGGPVSCVRFNPRYA 288 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEecCC-----------------------------------CCCCccccccCCcee
Confidence 999999999999999999999999988763 335889999999998
Q ss_pred EEeeCCCeEEEEEecCC
Q 014104 410 VTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 410 ~t~~~Dg~v~vw~~~~~ 426 (430)
.-++.+..+-+|=....
T Consensus 289 mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 289 MFVSASSNLVFWLPDED 305 (311)
T ss_pred eeeecCceEEEEecccc
Confidence 77788889999976543
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=235.01 Aligned_cols=286 Identities=17% Similarity=0.268 Sum_probs=202.5
Q ss_pred eEEEEe-ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCC--------------CEE
Q 014104 104 DIDQWK-AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE--------------SKI 166 (430)
Q Consensus 104 ~~~~l~-~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l 166 (430)
..+.+. +|.+.|+++.| +|| |||+||.||.|+||.+...+....-..........+..++ +..
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345667 89999999999 577 9999999999999998663331111110000001111111 111
Q ss_pred E---EEeCCeEEEEEcCCC---cccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEE
Q 014104 167 V---GLIGTRICIWRRNGL---RSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239 (430)
Q Consensus 167 ~---~~~~~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 239 (430)
. +..... .+.+.... +..+....+|...++.+++..+. |++++.|.+|++|++...+|++.|. |..-|+|+
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcV 415 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCV 415 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEE
Confidence 1 111111 11111111 11233445566666777776555 9999999999999999999999997 99999999
Q ss_pred EecC--CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec--
Q 014104 240 SLSE--DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI-- 315 (430)
Q Consensus 240 ~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-- 315 (430)
+|+| +++|++|+-||.|++|++...+.+.-.. ...-|++++|.|+|+..++|+.+|.+++|++...+.......
T Consensus 416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~ 493 (712)
T KOG0283|consen 416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRL 493 (712)
T ss_pred EecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEee
Confidence 9997 4899999999999999998776655444 346899999999999999999999999999998766554321
Q ss_pred C------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 316 S------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 316 ~------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
| ...|+++.++.-+...|++.+.|..|+|+|.++..++..+++....
T Consensus 494 ~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~--------------------------- 546 (712)
T KOG0283|consen 494 HNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT--------------------------- 546 (712)
T ss_pred ccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC---------------------------
Confidence 1 1379999955444446777889999999999888888888864441
Q ss_pred cCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecC
Q 014104 390 RIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
++..--++..||++|++|++|..|.||+.+.
T Consensus 547 -----~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 547 -----SSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -----CcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 1111122444899999999999999999853
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=201.43 Aligned_cols=252 Identities=13% Similarity=0.170 Sum_probs=200.3
Q ss_pred CCeEEEEecCCCe---eEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcc---cccCCCCceeeeeEEEEc
Q 014104 131 DKVMRLWSLEGYK---CVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRS---VFPSREGTFMKGLCMRYF 202 (430)
Q Consensus 131 dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~ 202 (430)
.|.+.|-++...+ ....+...+...-++|+++....+ ++.||++++||+..... .++.|..++ .++...
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV---~Svdwn 113 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREV---YSVDWN 113 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhhe---EEeccc
Confidence 6789999886443 344555667788899998654433 89999999999665443 344454443 444433
Q ss_pred C---CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 203 D---PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 203 ~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
. ..+++++.|++|++|+..-++.+.++.+|...|...+|+|. +++++++.|+++++||++..-....++. |...
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-h~~E 192 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-HNSE 192 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe-ccce
Confidence 2 23888899999999999999999999999999999999975 8999999999999999986544444776 7789
Q ss_pred eEEEEEec-CCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcCCCc-eE
Q 014104 278 IKTLCYNP-CSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQNTGE-VL 353 (430)
Q Consensus 278 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~~~~-~~ 353 (430)
+.++.|+. +.+.|++|+.|+.|++||+++ ..++.++.+|.-.|..+. |||.. ..|++++.|=+++|||...+. .+
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk-~Sph~~~lLaSasYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVK-FSPHHASLLASASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEe-cCcchhhHhhhccccceEEecccccchhhh
Confidence 99999986 456888999999999999998 457889999999999999 88865 488999999999999987443 23
Q ss_pred EEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE---cCeEEEEeeCCCeEEEEEe
Q 014104 354 SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV---GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~~~~l~t~~~Dg~v~vw~~ 423 (430)
.+.. .|+.-|..+.| ++.++++++-|+.+.||+-
T Consensus 272 e~~~------------------------------------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 272 ETVD------------------------------------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhh------------------------------------ccceEEeccccccccCceeeecccccceeeecc
Confidence 3332 35556777777 5889999999999999984
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=201.11 Aligned_cols=244 Identities=15% Similarity=0.221 Sum_probs=199.7
Q ss_pred EeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 103 IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.++..+..|.++|++++.+.-+++|||.|-+|+|||+.+...+..+-.| +.+.++.|.++-.
T Consensus 34 ~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S----------------- 96 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLS----------------- 96 (362)
T ss_pred eccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcc-----------------
Confidence 3567789999999999999889999999999999999988777766655 3344444433211
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
...|++|+.||.|.+|+...-+++..+++|.+.|+.++++|. .+.++.+.|+.+++||
T Consensus 97 ---------------------~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 97 ---------------------KSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWN 155 (362)
T ss_pred ---------------------hhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeeh
Confidence 013899999999999999999999999999999999999986 7778889999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
+-+|+.-..++- ....+.+.|+|.|.+++.+..++ |-+|.+.+.....++... ..+.++. | -++..|++|+.|+
T Consensus 156 LV~Gr~a~v~~L--~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~~~-~r~l~~~-~-l~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 156 LVRGRVAFVLNL--KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIENP-KRILCAT-F-LDGSELLVGGDNE 229 (362)
T ss_pred hhcCccceeecc--CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhhcc-ccceeee-e-cCCceEEEecCCc
Confidence 999998777764 33455699999999999888876 999999887766655433 4455665 4 3577899999999
Q ss_pred eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE----cCeEEEEeeCCC
Q 014104 341 VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV----GMKKVVTTHNSK 416 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~----~~~~l~t~~~Dg 416 (430)
.|.+||.+++.+...+.+|.. .|-++.+ ++.+|+|+|.||
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~------------------------------------RVK~i~~~~~~~~~~lvTaSSDG 273 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHEN------------------------------------RVKDIASYTNPEHEYLVTASSDG 273 (362)
T ss_pred eEEEeccCCCccceeeecchh------------------------------------heeeeEEEecCCceEEEEeccCc
Confidence 999999999888888876554 7888775 368999999999
Q ss_pred eEEEEEecCC
Q 014104 417 YIRLWKFNYS 426 (430)
Q Consensus 417 ~v~vw~~~~~ 426 (430)
.|+|||++..
T Consensus 274 ~I~vWd~~~~ 283 (362)
T KOG0294|consen 274 FIKVWDIDME 283 (362)
T ss_pred eEEEEEcccc
Confidence 9999999866
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=205.71 Aligned_cols=288 Identities=18% Similarity=0.255 Sum_probs=230.7
Q ss_pred eEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.++.|.||.+.|+.++...+ .+.+++.|.+.+||.+++++++.+|.+| +.+.++.|++.+..++ ++.|++..||..
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~ 219 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKA 219 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHH
Confidence 56788999999999998544 8999999999999999999999999998 6788899999999988 899999999972
Q ss_pred C----CCc-----------cc------------------------ccCCCCceee--eeEEEEcCCceEEEecCCeEEEE
Q 014104 180 N----GLR-----------SV------------------------FPSREGTFMK--GLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 180 ~----~~~-----------~~------------------------~~~~~~~~~~--~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
. .++ .. +....+|... ...|...++.+++++.|.+..+|
T Consensus 220 av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlw 299 (481)
T KOG0300|consen 220 AVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLW 299 (481)
T ss_pred hhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceee
Confidence 1 100 00 0000111111 12233345569999999999999
Q ss_pred ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 014104 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA 296 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 296 (430)
|+++++.+..+.+|....+.++-+|. .++++.+.|.+.++||++.. ..+..|.+ |...|+++.|..+ ..+++|+.|
T Consensus 300 DVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQG-HtdtVTS~vF~~d-d~vVSgSDD 377 (481)
T KOG0300|consen 300 DVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQG-HTDTVTSVVFNTD-DRVVSGSDD 377 (481)
T ss_pred eeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecc-cccceeEEEEecC-CceeecCCC
Confidence 99999999999999999999999987 78889999999999999843 34566777 8899999999865 568899999
Q ss_pred CeEEEEeCCCCc-eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 297 GYASCWDLRTMK-SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 297 g~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
.+|++||+++++ ++.+++. ..+++.++ .+..++.++.--.+..|++||+. |..+..++..
T Consensus 378 rTvKvWdLrNMRsplATIRt-dS~~NRva-vs~g~~iIAiPhDNRqvRlfDln-G~RlaRlPrt---------------- 438 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIRT-DSPANRVA-VSKGHPIIAIPHDNRQVRLFDLN-GNRLARLPRT---------------- 438 (481)
T ss_pred ceEEEeeeccccCcceeeec-CCccceeE-eecCCceEEeccCCceEEEEecC-CCccccCCcc----------------
Confidence 999999999864 5666654 47788888 88888888888888999999997 6666655432
Q ss_pred EeecccccCCcccccCCCCCCCCeeEEEEc----CeEEEEeeCCCeEEEEEecCCC
Q 014104 376 RNEGRRLSAGCCIDRIPKTIRPPITCLAVG----MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~----~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
...+|...|+|.+|. -.-|+++|-|..+.=|++...+
T Consensus 439 ---------------sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 439 ---------------SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ---------------cccccceeeeeeeccccCcccccccccccceeeeeEecccC
Confidence 226788999999993 2348999999999999998754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=201.80 Aligned_cols=287 Identities=13% Similarity=0.195 Sum_probs=231.4
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC------------C------eeEEeeecC-CceeEEEEe
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG------------Y------KCVEEYSLP-NAASLVDFD 160 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~------------~------~~~~~~~~~-~~~~~~~~~ 160 (430)
.++...+..|..++.+.+| +|| +++||+.|..|+|.|++. + ..++++..| +.+..+.|+
T Consensus 102 ~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 102 EYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred ccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 3467788999999999999 577 999999999999999862 1 234444444 678889999
Q ss_pred cCCCEEE-EEeCCeEEEEEcCCCc--ccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe---ecCC
Q 014104 161 FDESKIV-GLIGTRICIWRRNGLR--SVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHC 233 (430)
Q Consensus 161 ~~~~~l~-~~~~~~i~vwd~~~~~--~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~ 233 (430)
|....|+ ++.|++|+++|+.... ..+ ...+.+.+..+++.+.+..+++|....++++||+++-++...- ..|+
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 9999999 8999999999998653 222 2234455667788888888999999999999999998876543 4688
Q ss_pred CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
+.|+++.+++. ++.++|+.||.|++||--+++++.++...|.+ .|.+..|..+|+++.+.+.|..+++|.+.+++++.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 99999999965 89999999999999999999999999877765 89999999999999999999999999999999998
Q ss_pred eeecCC-----CceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCC
Q 014104 312 ETRISP-----NVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAG 385 (430)
Q Consensus 312 ~~~~~~-----~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~ 385 (430)
++.+.. .--+... |+....+++.-. ..+.+.-||.+++..+.-+.
T Consensus 342 ~YtGAg~tgrq~~rtqAv-FNhtEdyVl~pDEas~slcsWdaRtadr~~l~s---------------------------- 392 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAV-FNHTEDYVLFPDEASNSLCSWDARTADRVALLS---------------------------- 392 (430)
T ss_pred EEecCCcccchhhhhhhh-hcCccceEEccccccCceeeccccchhhhhhcc----------------------------
Confidence 887642 1112222 666666666554 45789999999877665554
Q ss_pred cccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 386 CCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 386 ~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
.+|++.+.++.-+ +.-++|||.|..+|+|--.
T Consensus 393 -------lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 393 -------LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -------cCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 4677888888774 6779999999999999644
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=213.96 Aligned_cols=278 Identities=18% Similarity=0.263 Sum_probs=208.9
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCee----EEeeec--CCceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC----VEEYSL--PNAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.|++|+..|.++++ +.| .|+|||.|.+|++||+..... .+.+.. .+.+.++.|++.+..|+ .+.....+++
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 58899999999999 567 999999999999999976432 122221 35788899999999888 8888899999
Q ss_pred EcCCCccc-----------ccCCCCceeeeeE--EEEcCCc-eEEEecCCeEEEEECCCCe-eeEEee-----cCCCCeE
Q 014104 178 RRNGLRSV-----------FPSREGTFMKGLC--MRYFDPE-AVVGCEDGTARVFDMYSRK-CSQIIR-----MHCAPVT 237 (430)
Q Consensus 178 d~~~~~~~-----------~~~~~~~~~~~~~--~~~~~~~-l~~~~~dg~i~vwd~~~~~-~~~~~~-----~~~~~i~ 237 (430)
|-++.+.. +....+|+....| |.+.... +++++.||++++||+...+ ..+.++ +..-+++
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 98765421 2334556554444 4444433 9999999999999997654 233332 2234789
Q ss_pred EEEecCC-CEEEEEeCCCeEEEEeCCCC--ceeEEEecCCCC--CeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceee
Q 014104 238 SLSLSED-QLIISGSSLGSIAISGLSSD--QRVATLRSTDCT--GIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-KSLW 311 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~ 311 (430)
.++|+++ ..|++|+.||+|.+||..+. .....+...|.. .|+|+.|+++|++|++-+.|+++++||+++. +++.
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh
Confidence 9999976 78999999999999997543 334455555766 8999999999999999999999999999974 4554
Q ss_pred eeecCC--CceEEEEEeeCCCCeEEEEc------CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccccc
Q 014104 312 ETRISP--NVVYSLQHLQNDTSTLVVGG------IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLS 383 (430)
Q Consensus 312 ~~~~~~--~~v~~l~~~s~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~ 383 (430)
...+-. -+-+..+ |||+.++|++|. ..|.+.+||..+-..++.+....
T Consensus 402 ~~tgL~t~~~~tdc~-FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~----------------------- 457 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCC-FSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIST----------------------- 457 (641)
T ss_pred hhcCCCccCCCCccc-cCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCC-----------------------
Confidence 443322 2334555 999999999987 35789999999888888876532
Q ss_pred CCcccccCCCCCCCCeeEEEEcC--eEEEEeeCCCeEEEE
Q 014104 384 AGCCIDRIPKTIRPPITCLAVGM--KKVVTTHNSKYIRLW 421 (430)
Q Consensus 384 ~~~~~~~~~~~h~~~v~~v~~~~--~~l~t~~~Dg~v~vw 421 (430)
..|..+.|+. +.|+.|+.||+++||
T Consensus 458 -------------aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 458 -------------ASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred -------------ceEEEEeecchhhheeeecCCCceEEE
Confidence 3667777764 347888888998886
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-27 Score=220.70 Aligned_cols=224 Identities=13% Similarity=0.080 Sum_probs=168.2
Q ss_pred EeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecC-CCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc
Q 014104 128 GVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFD-ESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE 205 (430)
Q Consensus 128 ~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (430)
|+.++.|++|+......+..+.+| ..+..++|+|+ +..
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~l---------------------------------------- 89 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEI---------------------------------------- 89 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCE----------------------------------------
Confidence 566788899988776677777766 44566777765 344
Q ss_pred eEEEecCCeEEEEECCCC--------eeeEEeecCCCCeEEEEecCC-C-EEEEEeCCCeEEEEeCCCCceeEEEecCCC
Q 014104 206 AVVGCEDGTARVFDMYSR--------KCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 275 (430)
|++|+.||+|++||+.++ .++..+.+|...|.+++|+|+ . ++++++.|++|++||+++++.+..+. +.
T Consensus 90 LASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~ 167 (568)
T PTZ00420 90 LASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MP 167 (568)
T ss_pred EEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cC
Confidence 555555666666665432 234467789999999999985 3 56789999999999999998887776 55
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE----eeCCCCeEEEEcCCC----eEEEEEc
Q 014104 276 TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH----LQNDTSTLVVGGIDG----VLRVLDQ 347 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~----~s~~~~~l~s~~~dg----~i~vwd~ 347 (430)
..|.+++|+|+|.+|++++.|+.|++||+++++.+.++.+|.+.+....+ |++++.+|++++.|+ .|+|||+
T Consensus 168 ~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDl 247 (568)
T PTZ00420 168 KKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDL 247 (568)
T ss_pred CcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEEC
Confidence 68999999999999999999999999999999999999999876544331 458889999988774 7999999
Q ss_pred CC-CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 348 NT-GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 348 ~~-~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
++ ++++..+..+.. .+.+..... ++.++++|+.|+.|++|++.
T Consensus 248 r~~~~pl~~~~ld~~----------------------------------~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 248 KNTTSALVTMSIDNA----------------------------------SAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred CCCCCceEEEEecCC----------------------------------ccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 85 566665543222 112222211 37789999999999999997
Q ss_pred CCC
Q 014104 425 YSD 427 (430)
Q Consensus 425 ~~~ 427 (430)
.+.
T Consensus 294 ~~~ 296 (568)
T PTZ00420 294 LGS 296 (568)
T ss_pred CCc
Confidence 653
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-27 Score=220.06 Aligned_cols=212 Identities=14% Similarity=0.177 Sum_probs=163.8
Q ss_pred EEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCCCe-------eEEeeecC-CceeEEEEecCCCEEEEEeCCeEE
Q 014104 107 QWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYK-------CVEEYSLP-NAASLVDFDFDESKIVGLIGTRIC 175 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~ 175 (430)
.+.||.+.|.+++|+ ++ +|++|+.|++|++||+.++. .+..+.+| ..+..++|+|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~------------ 137 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA------------ 137 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC------------
Confidence 478999999999994 44 99999999999999997642 23333333 223334444332
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
+..|++|+.|++|++||+++++.+..+.+|...|.+++|+|+ .++++++.|+
T Consensus 138 ---------------------------~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg 190 (493)
T PTZ00421 138 ---------------------------MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDK 190 (493)
T ss_pred ---------------------------CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCC
Confidence 123889999999999999999999999999999999999976 8999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEe----CCCeEEEEeCCCCc-eeeeeecCCCceEEEEEeeC
Q 014104 255 SIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGT----TAGYASCWDLRTMK-SLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~----~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~ 328 (430)
+|++||+++++.+..+.+ |.+ .+..+.|.+++..+++++ .|+.|++||+++.. ++.....+......+.+|++
T Consensus 191 ~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~ 269 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDE 269 (493)
T ss_pred EEEEEECCCCcEEEEEec-CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcC
Confidence 999999999999988887 544 455778898888777654 47899999998754 44333334333333334899
Q ss_pred CCCeEEEEc-CCCeEEEEEcCCCceEEEEEe
Q 014104 329 DTSTLVVGG-IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 329 ~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 358 (430)
++.+|++++ .|+.|++||+.+++++.....
T Consensus 270 d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~ 300 (493)
T PTZ00421 270 DTNLLYIGSKGEGNIRCFELMNERLTFCSSY 300 (493)
T ss_pred CCCEEEEEEeCCCeEEEEEeeCCceEEEeec
Confidence 999998887 599999999999987776544
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-28 Score=216.78 Aligned_cols=262 Identities=16% Similarity=0.214 Sum_probs=218.8
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeec-CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
.|+.|. +..|.+|+..+++....... .+.+..+.|+++|.+|+ +..+|.|.+||....+.+-.....+...+-++..
T Consensus 190 ~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 190 VLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW 268 (484)
T ss_pred eEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec
Confidence 555544 46899999999887766665 57788899999999999 9999999999998877654444445556677777
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeE
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
.+..+.+|+.|+.|..+|++..+.... +.+|...|..++|+++ .++++|+.|+.+.|||....+++..+.. |...|.
T Consensus 269 ~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-H~aAVK 347 (484)
T KOG0305|consen 269 NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-HTAAVK 347 (484)
T ss_pred cCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-cceeee
Confidence 777799999999999999998875544 8899999999999976 8999999999999999988888888887 999999
Q ss_pred EEEEecCC-CEEEEE--eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc--CCCeEEEEEcCCCceEE
Q 014104 280 TLCYNPCS-RLVFAG--TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG--IDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 280 ~~~~~~~~-~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~ 354 (430)
+++|+|-. .+||+| +.|+.|++||..+++.+..+... +.|.+|. |++..+-|+++- .++.|.||+..+.+.+.
T Consensus 348 A~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~-Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~ 425 (484)
T KOG0305|consen 348 ALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLI-WSKKYKELLSTHGYSENQITLWKYPSMKLVA 425 (484)
T ss_pred EeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEE-EcCCCCEEEEecCCCCCcEEEEeccccceee
Confidence 99999954 577775 46999999999999999887754 7899999 999887666543 67789999999988888
Q ss_pred EEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+.+|.. .|..+++ ||..+++|+.|.++++|++-.
T Consensus 426 ~l~gH~~------------------------------------RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 426 ELLGHTS------------------------------------RVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred eecCCcc------------------------------------eeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 8766554 6666666 567799999999999999865
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=212.51 Aligned_cols=258 Identities=17% Similarity=0.198 Sum_probs=214.1
Q ss_pred HHcccchhhcccCCE----------------eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeec
Q 014104 89 LAMKHHRFALEEGRI----------------DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL 150 (430)
Q Consensus 89 ~~~~~~~~~~~~~~~----------------~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~ 150 (430)
+.|+++++.++.+.. ..+++.||..+|..+.| ||. +|++++.|..+.+||+.+|+....+..
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 456777777777654 46789999999999999 454 999999999999999999999988886
Q ss_pred C--CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee
Q 014104 151 P--NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226 (430)
Q Consensus 151 ~--~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 226 (430)
. ..+.+.+|.|||..++ |+.|+++..||+++... .+.......+..+++.+++..+++.+.|..|++++.++....
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr 389 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR 389 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh
Confidence 5 5677799999999988 89999999999998762 344444455677888899999999999999999999877666
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC-CeEEEEEec-CCCEEEEEeCCCeEEEEe
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT-GIKTLCYNP-CSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~-~~~~l~~~~~dg~i~i~d 303 (430)
..+. ...+|+++..+.+ .++++--.+..+.+||++..+.++++.++..+ -+..-+|.- +..++++|++|+.|+||+
T Consensus 390 ~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 390 GLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred cccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 5444 4578999999965 77778888999999999988888888873322 333445543 447999999999999999
Q ss_pred CCCCceeeeeecCCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcC
Q 014104 304 LRTMKSLWETRISPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~ 348 (430)
..+++++.++.+|...|++++ ++|.. .++|++|.||+|+||-..
T Consensus 469 r~sgkll~~LsGHs~~vNcVs-wNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVS-WNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ccCCceeEeecCCcceeeEEe-cCCCCHHHhhccCCCCeEEEecCC
Confidence 999999999999999999999 88765 478999999999999875
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-27 Score=210.98 Aligned_cols=241 Identities=26% Similarity=0.416 Sum_probs=203.0
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEEEEe-CCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIVGLI-GTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~-~~~i~vwd~ 179 (430)
....+.+|...+..+.+ +++ ++++++.||.|++||+.+++.+..+..+. .+..+.+++++..++++. ++.+.+||+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 45677889999988888 555 99999999999999999888888887664 677799999988888555 999999999
Q ss_pred CCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 180 NGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 180 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
.+++...... .......+.+.+.+..+++++.+|.|++||+++++.+..+..|...+.++.|+|+ +.+++++.|+.|+
T Consensus 123 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 202 (289)
T cd00200 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIK 202 (289)
T ss_pred CCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEE
Confidence 8765433222 1122334445555455777777999999999999999999999999999999987 5888888899999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+||+++++.+..+.. +...+.++.|+|++.++++++.||.|++||+.+++.+..+..|...+.++. ++|++++|++++
T Consensus 203 i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~ 280 (289)
T cd00200 203 LWDLSTGKCLGTLRG-HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLA-WSPDGKRLASGS 280 (289)
T ss_pred EEECCCCceecchhh-cCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEE-ECCCCCEEEEec
Confidence 999999888888865 777999999999988888888899999999999999988999999999999 999999999999
Q ss_pred CCCeEEEEE
Q 014104 338 IDGVLRVLD 346 (430)
Q Consensus 338 ~dg~i~vwd 346 (430)
.||.|++|+
T Consensus 281 ~d~~i~iw~ 289 (289)
T cd00200 281 ADGTIRIWD 289 (289)
T ss_pred CCCeEEecC
Confidence 999999996
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-27 Score=219.56 Aligned_cols=254 Identities=11% Similarity=0.068 Sum_probs=180.0
Q ss_pred ccceeEEEe-cC-CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCC
Q 014104 112 SVGVDQCRM-KR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 112 ~~~v~~~~~-~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
-..|..... .+ ..+++++.+..+..|+...+..+......+.. ......+..|
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~-------------------------~~~~~~l~GH 74 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKL-------------------------ASNPPILLGQ 74 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccC-------------------------CCCCceEeCC
Confidence 334444444 34 47788888888888987655332211110000 0000112223
Q ss_pred CCceeeeeEEEE-cCCceEEEecCCeEEEEECCCC-------eeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEE
Q 014104 190 EGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSR-------KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAIS 259 (430)
Q Consensus 190 ~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vw 259 (430)
.+. +..+++.+ ++..|++|+.|++|++||+.++ +++..+.+|...|.+++|+|. ++|++|+.|++|++|
T Consensus 75 ~~~-V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 75 EGP-IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCC-EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 222 23344554 3345889999999999998754 356788899999999999975 689999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE-EEEEeeCCCCeEEEEc-
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY-SLQHLQNDTSTLVVGG- 337 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~l~~~s~~~~~l~s~~- 337 (430)
|+++++.+..+.. |...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+... .+. |.+++..+++++
T Consensus 154 Dl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~-w~~~~~~ivt~G~ 231 (493)
T PTZ00421 154 DVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCL-WAKRKDLIITLGC 231 (493)
T ss_pred ECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEE-EcCCCCeEEEEec
Confidence 9999999888887 788999999999999999999999999999999999999998876543 444 778877777654
Q ss_pred ---CCCeEEEEEcCCCc-eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEE
Q 014104 338 ---IDGVLRVLDQNTGE-VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVT 411 (430)
Q Consensus 338 ---~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t 411 (430)
.|+.|++||+++.. ++.....+. ...+....| ++++|++
T Consensus 232 s~s~Dr~VklWDlr~~~~p~~~~~~d~-----------------------------------~~~~~~~~~d~d~~~L~l 276 (493)
T PTZ00421 232 SKSQQRQIMLWDTRKMASPYSTVDLDQ-----------------------------------SSALFIPFFDEDTNLLYI 276 (493)
T ss_pred CCCCCCeEEEEeCCCCCCceeEeccCC-----------------------------------CCceEEEEEcCCCCEEEE
Confidence 47999999998654 333222111 123444444 5777888
Q ss_pred ee-CCCeEEEEEecCCCc
Q 014104 412 TH-NSKYIRLWKFNYSDK 428 (430)
Q Consensus 412 ~~-~Dg~v~vw~~~~~~~ 428 (430)
|+ .|+.|++||+..++.
T Consensus 277 ggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 277 GSKGEGNIRCFELMNERL 294 (493)
T ss_pred EEeCCCeEEEEEeeCCce
Confidence 77 599999999988763
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=207.39 Aligned_cols=272 Identities=17% Similarity=0.223 Sum_probs=216.8
Q ss_pred eccccceeEEEecC----CeEEEEeCCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 109 KAHSVGVDQCRMKR----GLILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 109 ~~h~~~v~~~~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
..-.+.|.+++|++ +..+|+|. .+.+|+..+....+++. ....+..++|..||+.++ |...|.|+++|.++.
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~--rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSV--RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccccCcceeEecCCCCCCceEEeccc--EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 33456899999943 35555554 79999998877777555 356788899999999999 778899999995552
Q ss_pred c--ccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEE
Q 014104 183 R--SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIA 257 (430)
Q Consensus 183 ~--~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~ 257 (430)
. ..+..|+.. ...+-+++.+.. +++|+.|+.+++||+.+......+.+|++.|.|.+++|. .++++|+.||.|+
T Consensus 101 ~iLR~~~ah~ap-v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 101 VILRQLYAHQAP-VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHHHHhhccCc-eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 2 233444433 234555555544 889999999999999988876688999999999999974 6899999999999
Q ss_pred EEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 258 ISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-KSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 258 vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
+||+++. ..+..+. |..+|..+.+-|.|..+++++.. .|++||+.+| +.+.....|...|+|+. +..++..|++
T Consensus 180 l~DtR~~~~~v~eln--hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~qll~~~~~H~KtVTcL~-l~s~~~rLlS 255 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELN--HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQLLTSMFNHNKTVTCLR-LASDSTRLLS 255 (487)
T ss_pred EEEeccCCceeEEec--CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCceehhhhhcccceEEEEE-eecCCceEee
Confidence 9999987 6677776 88899999999999999988765 5999999954 55555556999999999 8889999999
Q ss_pred EcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEee
Q 014104 336 GGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTH 413 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~ 413 (430)
|+-|+.|++||+.+.+.+..+.. .++|.+++. +++.++.|.
T Consensus 256 ~sLD~~VKVfd~t~~Kvv~s~~~-------------------------------------~~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 256 GSLDRHVKVFDTTNYKVVHSWKY-------------------------------------PGPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred cccccceEEEEccceEEEEeeec-------------------------------------ccceeeEEecCCCceEEEec
Confidence 99999999999988888888864 246777777 467788888
Q ss_pred CCCeEEEEEec
Q 014104 414 NSKYIRLWKFN 424 (430)
Q Consensus 414 ~Dg~v~vw~~~ 424 (430)
.||.+.+=+..
T Consensus 299 snGlv~~rr~~ 309 (487)
T KOG0310|consen 299 SNGLVSIRRRE 309 (487)
T ss_pred ccceeeeehhh
Confidence 88887765433
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-29 Score=214.25 Aligned_cols=241 Identities=17% Similarity=0.250 Sum_probs=197.4
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCC-CEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE-SKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~~~~i~vwd~ 179 (430)
++++|.||..+|..++|+ +| .++|+|.|+.+++||+++|+++..+.......++.|.|++ +.++ |..|+.|+.||+
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDi 329 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDI 329 (503)
T ss_pred eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEec
Confidence 678999999999999995 45 9999999999999999999999999998899999999998 4444 999999999999
Q ss_pred CCCcccc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 180 NGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 180 ~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
.+++.+. ..+-+. ...+.+..++..+++++.|++++||+.+.+-.++.+.. +.-...++..+|+ .+++.-+.|+.
T Consensus 330 Rs~kvvqeYd~hLg~-i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~ 408 (503)
T KOG0282|consen 330 RSGKVVQEYDRHLGA-ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY 408 (503)
T ss_pred cchHHHHHHHhhhhh-eeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence 9998432 222222 23355566777799999999999999988766654432 2235567888876 89999999999
Q ss_pred EEEEeCCCCc---eeEEEecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC-
Q 014104 256 IAISGLSSDQ---RVATLRST-DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT- 330 (430)
Q Consensus 256 i~vwd~~~~~---~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~- 330 (430)
|.++.+...- ....++++ ..+.-..+.|||||.+|++|+.||.+.+||.++-+.+..++.|.+.+..+. |+|..
T Consensus 409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~-wHP~e~ 487 (503)
T KOG0282|consen 409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVD-WHPVEP 487 (503)
T ss_pred EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEE-ecCCCc
Confidence 9999875422 22345542 123567789999999999999999999999999999999999999999999 77754
Q ss_pred CeEEEEcCCCeEEEEE
Q 014104 331 STLVVGGIDGVLRVLD 346 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd 346 (430)
..+||++.||.|++||
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 5899999999999996
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=198.65 Aligned_cols=249 Identities=18% Similarity=0.240 Sum_probs=199.3
Q ss_pred hhcccCCEeEEEEeccccceeEEEe--cCC---eEEEEeCCCeEEEEecCCCeeE----EeeecC-CceeEEEEecCCCE
Q 014104 96 FALEEGRIDIDQWKAHSVGVDQCRM--KRG---LILTGVGDKVMRLWSLEGYKCV----EEYSLP-NAASLVDFDFDESK 165 (430)
Q Consensus 96 ~~~~~~~~~~~~l~~h~~~v~~~~~--~~~---~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-~~~~~~~~~~~~~~ 165 (430)
+.|...+...+++.||.++|.++++ ++. .+++++.|.++++|.++.++.. +.-.+| ..+.+++..+++..
T Consensus 128 riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr 207 (423)
T KOG0313|consen 128 RIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTR 207 (423)
T ss_pred EEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCe
Confidence 4455556678899999999998887 333 7999999999999998876543 223355 55777999999999
Q ss_pred EE-EEeCCeEEEEEcCCCc------------------------ccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEE
Q 014104 166 IV-GLIGTRICIWRRNGLR------------------------SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFD 219 (430)
Q Consensus 166 l~-~~~~~~i~vwd~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd 219 (430)
++ ++.|..+.+|+.+... ..+....+|...+.++.+.+.. +++++.|.+|+.||
T Consensus 208 ~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WD 287 (423)
T KOG0313|consen 208 FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWD 287 (423)
T ss_pred EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEE
Confidence 99 9999999999933210 0111223444444555554444 99999999999999
Q ss_pred CCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc---eeEEEecCCCCCeEEEEEecCCC-EEEEEe
Q 014104 220 MYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ---RVATLRSTDCTGIKTLCYNPCSR-LVFAGT 294 (430)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~ 294 (430)
++++..+..+.+ ..++.++.++|. .++++|+.|..+++||.+++. ..+++.+ |.+.|.++.|+|... .|++|+
T Consensus 288 letg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g-H~nwVssvkwsp~~~~~~~S~S 365 (423)
T KOG0313|consen 288 LETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG-HKNWVSSVKWSPTNEFQLVSGS 365 (423)
T ss_pred eecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec-chhhhhheecCCCCceEEEEEe
Confidence 999999888874 568999999986 899999999999999999764 3456666 888999999999764 677999
Q ss_pred CCCeEEEEeCCCCc-eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 295 TAGYASCWDLRTMK-SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 295 ~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.|+++++||+|+.+ ++..+.+|.+.|.++. |+ ++..+++|+.|++|+++.-.
T Consensus 366 ~D~t~klWDvRS~k~plydI~~h~DKvl~vd-W~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 366 YDNTVKLWDVRSTKAPLYDIAGHNDKVLSVD-WN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCeEEEEEeccCCCcceeeccCCceEEEEe-cc-CCceEEeccCcceEEEeccc
Confidence 99999999999977 9999999999999999 64 57789999999999998643
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=209.44 Aligned_cols=323 Identities=14% Similarity=0.176 Sum_probs=245.9
Q ss_pred cCCEeEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE--EEeCCeE
Q 014104 100 EGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV--GLIGTRI 174 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~~~~i 174 (430)
+.++.+++++++...|+++.-++- .++.|..+|+|.++|+..++.+.+|+.. +.+..++|.-||..++ ++..|.+
T Consensus 190 rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 345678999999999999988664 8999999999999999999999999996 8888899999999887 4556999
Q ss_pred EEEEcCCCcccccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCC--C--eeeEEeecCCCCeEEEEec--CCCE
Q 014104 175 CIWRRNGLRSVFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYS--R--KCSQIIRMHCAPVTSLSLS--EDQL 246 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~~~~~i~~~~~~--~~~~ 246 (430)
.+||++..+........|. .....+.+..|.+++++.|..+++|=..+ | +.++.-.+|..|..++.|. .+.+
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 9999999875443333222 22344455666699999999998884443 3 3455556777777777776 2356
Q ss_pred EEEEeCCCeEEEEeC-----------------------------------------------------------------
Q 014104 247 IISGSSLGSIAISGL----------------------------------------------------------------- 261 (430)
Q Consensus 247 l~~~~~dg~i~vwd~----------------------------------------------------------------- 261 (430)
+.+++.|++.+.+++
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence 677777766665543
Q ss_pred CCCce-eEEEecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee---ecCCCceEEEEEeeCCCCeE
Q 014104 262 SSDQR-VATLRST----DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET---RISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 262 ~~~~~-~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~s~~~~~l 333 (430)
++... .+.+... ....+++++.++.|++.+.|+..|.|.+|++++|-....+ ..|.++|++++ ...-++.+
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla-~D~~n~~~ 508 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLA-VDGTNRLL 508 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEE-ecCCCceE
Confidence 22221 1112211 1246889999999999999999999999999999888887 58999999999 88888899
Q ss_pred EEEcCCCeEEEEEcCCCceEEEEEeccC---------cceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLSRCVMDIG---------SASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV 404 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 404 (430)
++++.+|.+++||.....++..+..... .-.++....|-.+.+.+..+. .+.+...+|++.|++++|
T Consensus 509 vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~----kvvR~f~gh~nritd~~F 584 (910)
T KOG1539|consen 509 VSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTR----KVVREFWGHGNRITDMTF 584 (910)
T ss_pred EEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhh----hhhHHhhccccceeeeEe
Confidence 9999999999999998887777765433 223455555666655444322 234455789999999999
Q ss_pred --cCeEEEEeeCCCeEEEEEecCCC
Q 014104 405 --GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 405 --~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
||++|++++.|++||+||+.++.
T Consensus 585 S~DgrWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 585 SPDGRWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred CCCCcEEEEeecCCcEEEEeccCcc
Confidence 69999999999999999999875
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=223.15 Aligned_cols=229 Identities=14% Similarity=0.159 Sum_probs=196.3
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
+..+++.+..|.++++-..|.|++||.+-+.++..+..|.++|..++|+|. .++++|++|-.|+||+..+.+++.++.+
T Consensus 12 vKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~G 91 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLG 91 (1202)
T ss_pred ccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhcc
Confidence 455777777888999999999999999999999999999999999999987 7999999999999999999999999998
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC---
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT--- 349 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~--- 349 (430)
|...|..+.|++.-.++++++.|.+|+||+..+.+++..+.+|...|.|.. |+|....++++|-|-+|+|||+..
T Consensus 92 -HlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq-FhptEDlIVSaSLDQTVRVWDisGLRk 169 (1202)
T KOG0292|consen 92 -HLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ-FHPTEDLIVSASLDQTVRVWDISGLRK 169 (1202)
T ss_pred -ccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeec-cCCccceEEEecccceEEEEeecchhc
Confidence 888999999999999999999999999999999999999999999999999 999999999999999999999861
Q ss_pred -----C---------------------ceEEEEEeccCcc----------eeeeccCCceEEEeecccccCCccc-ccCC
Q 014104 350 -----G---------------------EVLSRCVMDIGSA----------SSSSNKVSGVIERNEGRRLSAGCCI-DRIP 392 (430)
Q Consensus 350 -----~---------------------~~~~~~~~~~~~~----------~~~~~s~d~~v~~~~~~~~~~~~~~-~~~~ 392 (430)
+ -.-..+.+|+.++ .+++|+.|..++.|.-.... .. ....
T Consensus 170 k~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK---aWEvDtc 246 (1202)
T KOG0292|consen 170 KNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK---AWEVDTC 246 (1202)
T ss_pred cCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc---ceeehhh
Confidence 1 0112333454444 56788889988776532211 11 1234
Q ss_pred CCCCCCeeEEEEcC--eEEEEeeCCCeEEEEEecCCC
Q 014104 393 KTIRPPITCLAVGM--KKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 393 ~~h~~~v~~v~~~~--~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+|...|+++-|++ +.++|.|+|++|||||+...+
T Consensus 247 rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred hcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 78999999999976 789999999999999987543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=188.30 Aligned_cols=243 Identities=16% Similarity=0.189 Sum_probs=196.4
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCC-ceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeee
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREG-TFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCS 226 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~ 226 (430)
.+.+..+.|+.+|..++ ++.|..+++||...+..+...... ......++......++.++. |.+|+..++.+.+.+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl 93 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL 93 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence 35678899999999999 677889999999988765433322 23445666666666777766 889999999999999
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+.+.||...|.+++.+|. +.+++++.|++|++||++..++...+.. ..-..++|+|+|-++|++.....|++||++
T Consensus 94 RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~---~~~pi~AfDp~GLifA~~~~~~~IkLyD~R 170 (311)
T KOG1446|consen 94 RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL---SGRPIAAFDPEGLIFALANGSELIKLYDLR 170 (311)
T ss_pred EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec---CCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence 999999999999999985 8999999999999999998888777753 233457899999999999888899999999
Q ss_pred CC--ceeeeeecC---CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecc
Q 014104 306 TM--KSLWETRIS---PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGR 380 (430)
Q Consensus 306 ~~--~~~~~~~~~---~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~ 380 (430)
.. .+...+... ......+. |||||++|+.+...+.+++.|.-+|....++..++...
T Consensus 171 s~dkgPF~tf~i~~~~~~ew~~l~-FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~----------------- 232 (311)
T KOG1446|consen 171 SFDKGPFTTFSITDNDEAEWTDLE-FSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAG----------------- 232 (311)
T ss_pred ccCCCCceeEccCCCCccceeeeE-EcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCC-----------------
Confidence 73 344444333 46788898 99999999999999999999999999999998876621
Q ss_pred cccCCcccccCCCCCCCCee-EEEEcCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 381 RLSAGCCIDRIPKTIRPPIT-CLAVGMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 381 ~~~~~~~~~~~~~~h~~~v~-~v~~~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
..++. +...|++++++|+.||+|.+|++++|++.
T Consensus 233 ---------------~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 233 ---------------NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred ---------------CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 01122 23347888999999999999999988753
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=186.19 Aligned_cols=237 Identities=15% Similarity=0.238 Sum_probs=197.6
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc----ccCCCCceeeeeEEEEc-CCceEEEecCCeEEEEECCCCee
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV----FPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKC 225 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~ 225 (430)
..+..++|+.+|..++ ++.|+++.+|+++..+.. ...+.+.+.. +|+.+. ++.+++++.|.+|++||++++++
T Consensus 21 ~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdq-l~w~~~~~d~~atas~dk~ir~wd~r~~k~ 99 (313)
T KOG1407|consen 21 QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQ-LCWDPKHPDLFATASGDKTIRIWDIRSGKC 99 (313)
T ss_pred hcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhh-heeCCCCCcceEEecCCceEEEEEeccCcE
Confidence 4567799999999999 899999999999977532 3334444333 444444 44599999999999999999999
Q ss_pred eEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 226 SQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 226 ~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
+..+....+.| -+.|+| +++++.++.|..|...|.++.+.+...+ ....+..++|+.++.+++.....|.|.|...
T Consensus 100 ~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 100 TARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred EEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc--ccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 99888655555 466665 5899999999999999999988877766 4557888999988888887777899999999
Q ss_pred CCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccC
Q 014104 305 RTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSA 384 (430)
Q Consensus 305 ~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~ 384 (430)
...+++..++.|.....++. |+|+|+++|+|+.|-.+.+||++.--+++.+.-+.-
T Consensus 177 psLkpv~si~AH~snCicI~-f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw----------------------- 232 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIE-FDPDGRYFATGSADALVSLWDVDELICERCISRLDW----------------------- 232 (313)
T ss_pred cccccccccccCCcceEEEE-ECCCCceEeeccccceeeccChhHhhhheeeccccC-----------------------
Confidence 99999999999999999999 999999999999999999999998888888765443
Q ss_pred CcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 385 GCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 385 ~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+|..++| ||++|++||+|..|-|=++++|+++
T Consensus 233 -------------pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 233 -------------PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred -------------ceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 7888888 6889999999999988777777653
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-27 Score=210.99 Aligned_cols=283 Identities=17% Similarity=0.192 Sum_probs=221.2
Q ss_pred EEEEeccccceeEEEe-------------cCCeEEEEeCCCeEEEEecCCCeeEEe------------------------
Q 014104 105 IDQWKAHSVGVDQCRM-------------KRGLILTGVGDKVMRLWSLEGYKCVEE------------------------ 147 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-------------~~~~l~s~~~dg~i~iwd~~~~~~~~~------------------------ 147 (430)
...+.-|...|+.+.. |.+.++|++.|++|++||++.+..-..
T Consensus 362 ~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 362 CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhh
Confidence 4455678887777643 345899999999999999876211111
Q ss_pred --------------eecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-----eE
Q 014104 148 --------------YSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-----AV 207 (430)
Q Consensus 148 --------------~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~ 207 (430)
+....++.+++++|++++|+ |...|.+++|++...+.+... +.|...+.|+.+..+. |+
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~-eAHesEilcLeyS~p~~~~kLLA 520 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM-EAHESEILCLEYSFPVLTNKLLA 520 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe-ecccceeEEEeecCchhhhHhhh
Confidence 11223567899999999999 888999999999887644322 2333456888887665 89
Q ss_pred EEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEec-CC--CEEEEEeCCCeEEEEeCCCCceeEEEecC----CCCCeE
Q 014104 208 VGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLS-ED--QLIISGSSLGSIAISGLSSDQRVATLRST----DCTGIK 279 (430)
Q Consensus 208 ~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~-~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~v~ 279 (430)
+++.|..|.|||+... .+++++.+|...|++++|. .+ ..+++++.|..|.+=-.+.......+..+ ....++
T Consensus 521 SasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 521 SASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred hccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEE
Confidence 9999999999998654 5678999999999999998 44 57889999988755333221112222221 223789
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec---CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 280 TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI---SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.|++.|+.+++++++.|..|+|||+.+++..+.|++ |.+....+. ..|.|-||++.+.|.++.++|..+|+++.++
T Consensus 601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~-lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI-LDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE-ECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 999999999999999999999999999999998875 446677777 8999999999999999999999999999988
Q ss_pred EeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 357 VMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 357 ~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+| ...|+.+.| |.+.|++.+.||.|.||++..
T Consensus 680 ~GH------------------------------------sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 TGH------------------------------------SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred cCc------------------------------------chheeeeeecccchhheeecCCceEEEEECch
Confidence 764 458999999 678899999999999999864
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=185.44 Aligned_cols=198 Identities=12% Similarity=0.114 Sum_probs=167.1
Q ss_pred eeEEeecCCCCeEEEEecCCC--EEEEEeCCCeEEEEeCCC---CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 225 CSQIIRMHCAPVTSLSLSEDQ--LIISGSSLGSIAISGLSS---DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
.++.+++|.+.+..++|+|+. .|++|+.|+.|++|+... -.+...+...|...|++++|+|.|++|++|+.|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 457788999999999999874 899999999999999884 345556666688899999999999999999999999
Q ss_pred EEEeCCC--CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC---ceEEEEEeccCc----------ce
Q 014104 300 SCWDLRT--MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG---EVLSRCVMDIGS----------AS 364 (430)
Q Consensus 300 ~i~d~~~--~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~----------~~ 364 (430)
.||.-.. .+++..+++|...|.+++ |+++|.+||+++.|++|-||.+..+ +++..+..|.+. -.
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Va-ws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVA-WSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEE-EcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 9998664 467889999999999999 9999999999999999999999854 456666666554 37
Q ss_pred eeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 365 SSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
++++|-|.+++++.... ...-.......+|...|.+++|+ |.+|+++++|++|+||...
T Consensus 165 L~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred eEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 88999999998877665 44434444446788899999995 8899999999999999843
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=209.20 Aligned_cols=316 Identities=16% Similarity=0.225 Sum_probs=227.7
Q ss_pred cccccee---EEEe--cCC-eEEEEeCCCeEEEEecCCCe------eEEeeecC-CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 110 AHSVGVD---QCRM--KRG-LILTGVGDKVMRLWSLEGYK------CVEEYSLP-NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 110 ~h~~~v~---~~~~--~~~-~l~s~~~dg~i~iwd~~~~~------~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
.|...|. ++.. +++ +|+|||.||.|++|+..... .+..++.| +-+.-+....+++.++ ++.|.+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 4555555 3333 455 89999999999999876421 24455555 3355567777887788 89999999
Q ss_pred EEEcCCCcc-cccCCCCceeeeeEEEE---cCCceEEEecCCeEEEEECCCCee--e--------EEee-cCCCCeEEEE
Q 014104 176 IWRRNGLRS-VFPSREGTFMKGLCMRY---FDPEAVVGCEDGTARVFDMYSRKC--S--------QIIR-MHCAPVTSLS 240 (430)
Q Consensus 176 vwd~~~~~~-~~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~--~--------~~~~-~~~~~i~~~~ 240 (430)
+|+...... -......|...+-|+++ ..+.+++|+.|+.|.+||+.++.. + ..+. ++..+|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 999987641 11222223233344444 455599999999999999998732 2 2223 7888999999
Q ss_pred ecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCc
Q 014104 241 LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNV 319 (430)
Q Consensus 241 ~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 319 (430)
.++. ..+++|+..+.+++||.++++.+..+.+ |...|.++..++||..+++++.||+|++||+...+++.++..|...
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG-HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~ 257 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG-HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG 257 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeec-cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc
Confidence 9875 6889999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc-eEEEEEe---------ccCcceeeeccCCceEEEeecccccC---Cc
Q 014104 320 VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE-VLSRCVM---------DIGSASSSSNKVSGVIERNEGRRLSA---GC 386 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~---------~~~~~~~~~~s~d~~v~~~~~~~~~~---~~ 386 (430)
|+++. .+|+-..+++|+.||.|+.=|+++.. +...++. +...-..-+.+.|+.|..|....... ..
T Consensus 258 VWaL~-~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~ 336 (735)
T KOG0308|consen 258 VWALQ-SSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSG 336 (735)
T ss_pred eEEEe-eCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCccccccccCC
Confidence 99999 89999999999999999999998742 2222221 11111225667788776554432211 00
Q ss_pred ccccCC---CC--------CC------CCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 387 CIDRIP---KT--------IR------PPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 387 ~~~~~~---~~--------h~------~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+.... .. |. .+|..-++ |-++++|-..+|.+.+||+-..+
T Consensus 337 ~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~ 396 (735)
T KOG0308|consen 337 DLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWDILACV 396 (735)
T ss_pred CCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEEeeeee
Confidence 000000 00 11 11222222 57889999999999999986543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-27 Score=200.74 Aligned_cols=270 Identities=15% Similarity=0.197 Sum_probs=194.7
Q ss_pred CEeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWR 178 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd 178 (430)
...+...-.|.+.|+.+.+ |.+ .+++++..+.|.|||..+..-.....+ .+ ..+..
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-------~~--~Pdl~------------ 172 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-------EC--RPDLR------------ 172 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-------cC--CCceE------------
Confidence 3455555679999999988 433 888899999999999775332221110 01 11111
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCe-------eeEEeecCCCCeEEEEecC--CCEEE
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK-------CSQIIRMHCAPVTSLSLSE--DQLII 248 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~~~--~~~l~ 248 (430)
+..|... ...++|....+. +++++.|++|.+||+.... +...+.+|...|..++|++ .++|+
T Consensus 173 -------L~gH~~e-g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~ 244 (422)
T KOG0264|consen 173 -------LKGHEKE-GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFG 244 (422)
T ss_pred -------EEeeccc-ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhe
Confidence 1111111 112344443333 8999999999999986532 3467789999999999996 37999
Q ss_pred EEeCCCeEEEEeCCC--CceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEE
Q 014104 249 SGSSLGSIAISGLSS--DQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~ 324 (430)
+++.|+.+.+||+|+ .++...... |.+.|.|++|+|-+ ..||+|+.|++|++||+|+ .+++..+.+|...|..+.
T Consensus 245 sv~dd~~L~iwD~R~~~~~~~~~~~a-h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~ 323 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNTSKPSHSVKA-HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVE 323 (422)
T ss_pred eecCCCeEEEEEcCCCCCCCcccccc-cCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEE
Confidence 999999999999994 455555555 89999999999955 5778999999999999998 457889999999999999
Q ss_pred EeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 325 HLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 325 ~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
|+|... .|++++.|+.+.|||+..-...+..... .|| ..++..+-.||...|..++
T Consensus 324 -WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda----------~dg------------ppEllF~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 324 -WSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDA----------EDG------------PPELLFIHGGHTAKVSDFS 380 (422)
T ss_pred -eCCCCCceeEecccCCcEEEEeccccccccChhhh----------ccC------------CcceeEEecCccccccccc
Confidence 888764 7788999999999999743222221100 000 0112233468999999999
Q ss_pred Ec---CeEEEEeeCCCeEEEEEec
Q 014104 404 VG---MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 404 ~~---~~~l~t~~~Dg~v~vw~~~ 424 (430)
|+ .-.|+|+++|+.+.||+..
T Consensus 381 Wnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 381 WNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCCeEEEEecCCceEEEeecc
Confidence 95 5679999999999999976
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=186.71 Aligned_cols=260 Identities=14% Similarity=0.121 Sum_probs=203.7
Q ss_pred cccceeEEEec--CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 111 HSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 111 h~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
..+.|..+.|+ .+.|+.++.||++++||.........+....+....+|.++...+.++.||.|+++|++++......
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig 91 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG 91 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec
Confidence 36789999995 3378888899999999999988888888878888888888777777999999999999998865555
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeE
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVA 268 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 268 (430)
........++..+....+++|+.|++|++||.+....+..+. ....|.++... ++.|+.|+.|..|.+||+++.....
T Consensus 92 th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 92 THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc-CCEEEEeecCceEEEEEcccccchh
Confidence 444445555555557779999999999999998765655555 34589999885 4578888999999999999866543
Q ss_pred EEe-cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----ceeeeeecCC---------CceEEEEEeeCCCCeEE
Q 014104 269 TLR-STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----KSLWETRISP---------NVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 269 ~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~---------~~v~~l~~~s~~~~~l~ 334 (430)
+.. ....-.++|+++-|++.-.++++-||.|.+=.+... +....++.|. -+|++++ |+|--..++
T Consensus 170 q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~-Fhp~~~tfa 248 (323)
T KOG1036|consen 170 QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA-FHPIHGTFA 248 (323)
T ss_pred hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE-eccccceEE
Confidence 222 224448999999999988999999999888665544 3334566664 3689999 999999999
Q ss_pred EEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCce
Q 014104 335 VGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGV 373 (430)
Q Consensus 335 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~ 373 (430)
||+.||.|.+||+.+.+.+..+......+..++++.||.
T Consensus 249 TgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~ 287 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGS 287 (323)
T ss_pred ecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCC
Confidence 999999999999999998888876555444444444443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=195.42 Aligned_cols=272 Identities=18% Similarity=0.215 Sum_probs=222.7
Q ss_pred cceeEEEecC--CeEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc--cc
Q 014104 113 VGVDQCRMKR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRNGLRS--VF 186 (430)
Q Consensus 113 ~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~--~~ 186 (430)
..+.++.... ..++||+.|.++.++|..+++.+..+++|. .+..+.++++...++ ++.|..|++|....... ..
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 3566676633 599999999999999999999999999984 456688999988888 89999999999876542 33
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC--CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--CAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 263 (430)
..++. .+......+.+.++++++.||+..+.|++++..+...... .-.+++.+|+|+ .+|.+|+.|+.|++||+.+
T Consensus 300 ~~h~~-~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 300 RPHEE-PVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred ccccc-cceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 33433 3556778888999999999999999999999887665532 235899999987 6888999999999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
+..+..|.+ |.++|..++|+.+|.+|++++.|+.|++||+|..+...++.... ..+.++. |.+.|.+|+.++.|=.|
T Consensus 379 ~~~~a~Fpg-ht~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~-fD~SGt~L~~~g~~l~V 456 (506)
T KOG0289|consen 379 QTNVAKFPG-HTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS-FDQSGTYLGIAGSDLQV 456 (506)
T ss_pred ccccccCCC-CCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE-EcCCCCeEEeecceeEE
Confidence 999999998 99999999999999999999999999999999888777766443 3688998 99999999999887777
Q ss_pred EEEEcCC--CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeE
Q 014104 343 RVLDQNT--GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYI 418 (430)
Q Consensus 343 ~vwd~~~--~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v 418 (430)
++++-.+ ..++..+. .|.+..+++.| +.++++++|.|..+
T Consensus 457 y~~~k~~k~W~~~~~~~------------------------------------~~sg~st~v~Fg~~aq~l~s~smd~~l 500 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELA------------------------------------DHSGLSTGVRFGEHAQYLASTSMDAIL 500 (506)
T ss_pred EEEecccccceeeehhh------------------------------------hcccccceeeecccceEEeeccchhhe
Confidence 7776433 23333333 35567889999 47889999999999
Q ss_pred EEEEe
Q 014104 419 RLWKF 423 (430)
Q Consensus 419 ~vw~~ 423 (430)
+++.+
T Consensus 501 ~~~a~ 505 (506)
T KOG0289|consen 501 RLYAL 505 (506)
T ss_pred EEeec
Confidence 99865
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-25 Score=173.16 Aligned_cols=283 Identities=14% Similarity=0.151 Sum_probs=214.8
Q ss_pred EeccccceeEEEe-cCC-eEEEEeCCCeEEEEecC------CCe------eE---Eeeec-CCceeEEEEecCCCEEE-E
Q 014104 108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE------GYK------CV---EEYSL-PNAASLVDFDFDESKIV-G 168 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~------~~~------~~---~~~~~-~~~~~~~~~~~~~~~l~-~ 168 (430)
+...+..|.+++| |.| +.+.|++..+.+|--.. .+. +. +.-++ .+.+.+.+|+|+|+.++ +
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 3445678999999 555 88999999999987432 111 01 11223 36678899999999999 8
Q ss_pred EeCCeEEEEEcCCCcc-------cccCCCCceeeeeEEEEcCCc----eEEEe-cCCeEEEEECCCCeeeEEeecCCCCe
Q 014104 169 LIGTRICIWRRNGLRS-------VFPSREGTFMKGLCMRYFDPE----AVVGC-EDGTARVFDMYSRKCSQIIRMHCAPV 236 (430)
Q Consensus 169 ~~~~~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~i 236 (430)
+.|.+|++..++.... -+..+.+.+ ..+++...... +++++ .|..|++-|..+|+..+.+.+|++-|
T Consensus 108 sndk~ik~l~fn~dt~~~~g~dle~nmhdgti-rdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNATGHDLEFNMHDGTI-RDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred CCCceEEEEecccccccccCcceeeeecCCce-eeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 9999999987664332 234444443 34555443322 55443 46778888999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecC------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 014104 237 TSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 237 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
.++---++-++++|+.|.+|++||++-..++.++... ....|.++++.|.|++|++|-.|....+||++.++++
T Consensus 187 lalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i 266 (350)
T KOG0641|consen 187 LALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI 266 (350)
T ss_pred EEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee
Confidence 8875547789999999999999999998888877532 1247999999999999999999999999999999999
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccccc
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDR 390 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~ 390 (430)
+.+..|...|.++. |+|...|+++++.|..|++=|+. |.+...+..-
T Consensus 267 q~f~phsadir~vr-fsp~a~yllt~syd~~ikltdlq-gdla~el~~~------------------------------- 313 (350)
T KOG0641|consen 267 QRFHPHSADIRCVR-FSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPIM------------------------------- 313 (350)
T ss_pred eeeCCCccceeEEE-eCCCceEEEEecccceEEEeecc-cchhhcCceE-------------------------------
Confidence 99999999999999 99999999999999999999987 4433332210
Q ss_pred CCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 391 IPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 391 ~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
....|...+..+.|+ .--+++.+.|.++.+|-+.
T Consensus 314 vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 002344556666674 3348899999999999764
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=188.97 Aligned_cols=287 Identities=16% Similarity=0.255 Sum_probs=193.4
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCee-----EE-eeecCCceeEEEEecCCCEEE--EEeCC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC-----VE-EYSLPNAASLVDFDFDESKIV--GLIGT 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~l~--~~~~~ 172 (430)
-.+..|+||.+.|++++| +|| +|+|++.|++|++|++..-+. ++ .++ -+....+.|+||-+.++ .....
T Consensus 77 l~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCC
Confidence 356789999999999999 577 999999999999999875321 11 111 13566788999887765 44456
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
++++|.+...+. +. ..-...-||-. ..-+.|.-.+..+-...+ .++++++
T Consensus 156 ~l~vyk~~K~~d------G~------------------~~~~~v~~D~~-----~f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 156 KLCVYKLVKKTD------GS------------------GSHHFVHIDNL-----EFERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred EEEEEEeeeccc------CC------------------CCccccccccc-----ccchhcccceEEEeecCCceEEEEec
Confidence 677776543321 00 00011112210 111235556666666544 7999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC---C-----ceeeeeecCCCceEEE
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT---M-----KSLWETRISPNVVYSL 323 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~-----~~~~~~~~~~~~v~~l 323 (430)
.|..|.+||++ |+.+..+.. ....-+..+.+|+|+++++++---.|++|.+-- | ..+.++++|...|..+
T Consensus 207 ~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~ 284 (420)
T KOG2096|consen 207 LDTKICLWDLK-GQLLQSIDT-NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAA 284 (420)
T ss_pred CCCcEEEEecC-Cceeeeecc-ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeee
Confidence 99999999998 999999886 455677889999999999998878899998632 2 2456789999999999
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCC----C---ceEEEEE--ecc--CcceeeeccCCceEEEe------ecccccCCc
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNT----G---EVLSRCV--MDI--GSASSSSNKVSGVIERN------EGRRLSAGC 386 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~----~---~~~~~~~--~~~--~~~~~~~~s~d~~v~~~------~~~~~~~~~ 386 (430)
+ |+++...+++.|.||+.++||++- + +.+++.. .+. +.-.-+.-|++|.+... .......+.
T Consensus 285 a-Fsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 285 A-FSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred e-eCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCc
Confidence 9 999999999999999999999862 1 1122211 000 00112233444443211 111112233
Q ss_pred ccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEe
Q 014104 387 CIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~ 423 (430)
....+...|...|++++| +|++++|+|+ ..+++..-
T Consensus 364 ~~~~~e~~h~~~Is~is~~~~g~~~atcGd-r~vrv~~n 401 (420)
T KOG2096|consen 364 DYPELEDIHSTTISSISYSSDGKYIATCGD-RYVRVIRN 401 (420)
T ss_pred cchhHHHhhcCceeeEEecCCCcEEeeecc-eeeeeecC
Confidence 344556679999999999 5899999885 67888763
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=208.31 Aligned_cols=237 Identities=18% Similarity=0.214 Sum_probs=203.8
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccccc
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~ 187 (430)
+.+.|+++.+ ++| +|++|..+|.|.|||..+.+.+..+.+++...+.++++++..+. |+.++.|..+|+...+....
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS 295 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh
Confidence 4889999999 455 99999999999999999999898888855666666666677777 99999999999998875544
Q ss_pred CCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEe--CCCeEEEEeC
Q 014104 188 SREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGS--SLGSIAISGL 261 (430)
Q Consensus 188 ~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~--~dg~i~vwd~ 261 (430)
...+|. +..+.+++++..+++|+.|+.+.|||....++...+..|.+.|.+++|+|- ++||+|+ .|+.|++||.
T Consensus 296 ~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNT 375 (484)
T ss_pred hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEc
Confidence 333333 344556667777999999999999999888899999999999999999984 7888874 7999999999
Q ss_pred CCCceeEEEecCCCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 262 SSDQRVATLRSTDCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
.++..+..+. ....|..|.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|..++ ++|||..+++|+.|
T Consensus 376 ~~g~~i~~vd--tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la-~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 376 NTGARIDSVD--TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLA-LSPDGETIVTGAAD 452 (484)
T ss_pred CCCcEecccc--cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEE-ECCCCCEEEEeccc
Confidence 9999999887 5679999999999877775 44577899999999999999999999999999 99999999999999
Q ss_pred CeEEEEEcCCC
Q 014104 340 GVLRVLDQNTG 350 (430)
Q Consensus 340 g~i~vwd~~~~ 350 (430)
.++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 99999998754
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-27 Score=203.33 Aligned_cols=273 Identities=15% Similarity=0.196 Sum_probs=221.4
Q ss_pred ccccceeEEEecCC--eEEEEeCCCeEEEEecCCC---eeEEeee---cCCceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 110 AHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGY---KCVEEYS---LPNAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 110 ~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~---~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
.|..-|.++.+++- +++||+. |.|+|||+... ..+..+. ..+.+....+.+||+.|+ ++.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 58888888888543 8998886 78999998743 2233333 235567788999999988 8888999999998
Q ss_pred CCcccccC-CCC--ceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 181 GLRSVFPS-REG--TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 181 ~~~~~~~~-~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
.....+.. ... .....++++++.+..++++.||.|.|||+.+...++.+++|++.+.|+.++++ ..|.+|+-|.+|
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntv 575 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTV 575 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccce
Confidence 77643322 111 22334556667777889999999999999999999999999999999999965 789999999999
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+.||+++++.+.... ....|.++..+|++.+|++|-.++.+.+..... .....+..|.+.|.++. |.+-|+++++.
T Consensus 576 RcWDlregrqlqqhd--F~SQIfSLg~cP~~dWlavGMens~vevlh~sk-p~kyqlhlheScVLSlK-Fa~cGkwfvSt 651 (705)
T KOG0639|consen 576 RCWDLREGRQLQQHD--FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK-PEKYQLHLHESCVLSLK-FAYCGKWFVST 651 (705)
T ss_pred eehhhhhhhhhhhhh--hhhhheecccCCCccceeeecccCcEEEEecCC-ccceeecccccEEEEEE-ecccCceeeec
Confidence 999999998877665 667999999999999999999999999988764 34456777889999999 99999999999
Q ss_pred cCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE--EEEcCeEEEEeeC
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC--LAVGMKKVVTTHN 414 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~--v~~~~~~l~t~~~ 414 (430)
+.|+.+..|.+.-|..+...+. .+.|.+ |++|++++|||+.
T Consensus 652 GkDnlLnawrtPyGasiFqskE-------------------------------------~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKE-------------------------------------SSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred CchhhhhhccCccccceeeccc-------------------------------------cCcceeeeeccCceEEEecCC
Confidence 9999999999988877665543 235665 5558999999999
Q ss_pred CCeEEEEEec
Q 014104 415 SKYIRLWKFN 424 (430)
Q Consensus 415 Dg~v~vw~~~ 424 (430)
|..-.||.+.
T Consensus 695 dkkATVYeV~ 704 (705)
T KOG0639|consen 695 DKKATVYEVI 704 (705)
T ss_pred CcceEEEEEe
Confidence 9999999864
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-27 Score=185.75 Aligned_cols=238 Identities=15% Similarity=0.218 Sum_probs=184.0
Q ss_pred eeEEEEec-CCCEEE-E-------EeCCeEEEEEcCCCcccc---cCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEEC
Q 014104 154 ASLVDFDF-DESKIV-G-------LIGTRICIWRRNGLRSVF---PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDM 220 (430)
Q Consensus 154 ~~~~~~~~-~~~~l~-~-------~~~~~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~ 220 (430)
...+.|+| -.++|+ + ...|.+.|.++..+..+. .-........++++..... +++++.||++++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 34577777 233333 2 235888999886443221 1112223345667666555 899999999999996
Q ss_pred CC-CeeeEEeecCCCCeEEEEecC--CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC-CCEEEEEeCC
Q 014104 221 YS-RKCSQIIRMHCAPVTSLSLSE--DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC-SRLVFAGTTA 296 (430)
Q Consensus 221 ~~-~~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 296 (430)
.. ..+++.++.|...|.++.|++ ...+++++.|++|++||...++.+.++.+ |...|....|+|. ++.+++++.|
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-HNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC-CccEEEEEecCCCCCCeEEEccCC
Confidence 43 357889999999999999995 36788889999999999999999999998 8999999999995 5788899999
Q ss_pred CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc-eEEEEEeccCcceeeeccCCceEE
Q 014104 297 GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE-VLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
+++++||++..-....+..|...+.++.|-..+...|+||+.|+.|+.||+++-+ ++..+
T Consensus 170 ~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL------------------- 230 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL------------------- 230 (311)
T ss_pred ceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee-------------------
Confidence 9999999987443344899998999999444566789999999999999998643 34443
Q ss_pred EeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeCCCeEEEEEecCCCc
Q 014104 376 RNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+|.-.|..|.|+ ...|+|++.|-++||||...++.
T Consensus 231 -----------------~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 231 -----------------NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred -----------------cCCceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 3466688999885 45699999999999999986643
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=185.27 Aligned_cols=263 Identities=16% Similarity=0.131 Sum_probs=206.4
Q ss_pred ccccceeEEEecC---CeEEEEeCCCeEEEEecCC-CeeEEe--eecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 110 AHSVGVDQCRMKR---GLILTGVGDKVMRLWSLEG-YKCVEE--YSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 110 ~h~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
...+.|.+++|++ ++++.||.|++||+|+++. |..... ....+.+..++|+.||..++ ++.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4578899999954 3788999999999999986 344322 23446778899999999988 999999999999999
Q ss_pred ccc-ccCCCCceeeeeEEEEcCC--ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEE
Q 014104 183 RSV-FPSREGTFMKGLCMRYFDP--EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~-~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vw 259 (430)
+.. +..|.+.+ ..+.|..... .|++|+.|.+|+.||.+...++.++. -.+.+.++..- ..+++.+..+..|.+|
T Consensus 105 Q~~~v~~Hd~pv-kt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~-~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 105 QVSQVAAHDAPV-KTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL-YPMAVVATAERHIAVY 181 (347)
T ss_pred Ceeeeeecccce-eEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc-CceeEEEecCCcEEEE
Confidence 754 44555554 3344443333 38999999999999999998888876 35677777763 4578888999999999
Q ss_pred eCCCCcee-EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--ceeeeeecCCC---------ceEEEEEee
Q 014104 260 GLSSDQRV-ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM--KSLWETRISPN---------VVYSLQHLQ 327 (430)
Q Consensus 260 d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~---------~v~~l~~~s 327 (430)
+++++... +.......-.++|++..++....+.|+-+|.+.+..+..+ +.-..++.|.. .|++++ |+
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~-Fh 260 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIA-FH 260 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceE-ee
Confidence 99876543 2333334458999999999998899999999999988876 44456777762 477888 99
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEE
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
|.-..|+|++.||+..+||-+....+.+.+.+++.+..-++..+|.++.
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa 309 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA 309 (347)
T ss_pred cccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence 9999999999999999999998888888888888777777777777753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-26 Score=198.89 Aligned_cols=237 Identities=20% Similarity=0.233 Sum_probs=193.8
Q ss_pred ecCCceeEEEEec-CCCEEEEEeCCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee
Q 014104 149 SLPNAASLVDFDF-DESKIVGLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226 (430)
Q Consensus 149 ~~~~~~~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 226 (430)
+.++.+..++|+| ++..++.+..-.+.+|+..+....- ...-...+...++..++..+++|...|.|+++|+.+...+
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3457788899999 4556778888899999988766332 2233344556778888888999999999999998777788
Q ss_pred EEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEe
Q 014104 227 QIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWD 303 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d 303 (430)
+.+.+|+.++..+.|+|. ..+++|++|+.+++||+.+......+.+ |...|.|.+++|... .+++|+.||+|++||
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-HTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-CcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 899999999999999963 6899999999999999999887556776 899999999999655 788999999999999
Q ss_pred CCCC-ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-EEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 304 LRTM-KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 304 ~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
++.. ..+.++. |..+|-++. +-|.|..+++++. +.|+|||+.+|.. +..+.
T Consensus 183 tR~~~~~v~eln-hg~pVe~vl-~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~------------------------ 235 (487)
T KOG0310|consen 183 TRSLTSRVVELN-HGCPVESVL-ALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMF------------------------ 235 (487)
T ss_pred eccCCceeEEec-CCCceeeEE-EcCCCCEEEEcCC-CeEEEEEecCCceehhhhh------------------------
Confidence 9986 5565654 778999998 7788899998875 5799999996644 33332
Q ss_pred ccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|...|||+.+ ++..|+|||-|+.|++||+.+
T Consensus 236 ------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 236 ------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred ------------cccceEEEEEeecCCceEeecccccceEEEEccc
Confidence 25569999999 579999999999999999654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-27 Score=198.32 Aligned_cols=238 Identities=18% Similarity=0.238 Sum_probs=197.8
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.+.+|.|..++|+.+.| +++ ++++++.|+.+++|++...+...++.+| +.+..+.|......++ ++.|.+|+.||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 56688889999999999 556 9999999999999999999999999997 4566677777666566 999999999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~v 258 (430)
......-........ ..+......+++|-.|+.|++||+++..+......+. .|+++..+++ ..+++++.|.++.+
T Consensus 291 ~k~~C~kt~l~~S~c--nDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~v 367 (459)
T KOG0288|consen 291 QKAYCSKTVLPGSQC--NDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKV 367 (459)
T ss_pred hhhheeccccccccc--cceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceee
Confidence 986644333333222 2222224458999999999999999999999998764 9999999966 67888899999999
Q ss_pred EeCCCCceeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCC--ceEEEEEeeCCCCeE
Q 014104 259 SGLSSDQRVATLRST---DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPN--VVYSLQHLQNDTSTL 333 (430)
Q Consensus 259 wd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~s~~~~~l 333 (430)
.|+++.+....+... .....+.+.|+|++.|+++|+.||.|+||++.++++...+..... .|+++. |+|.|..|
T Consensus 368 iDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~-W~~sG~~L 446 (459)
T KOG0288|consen 368 IDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLS-WNPSGSGL 446 (459)
T ss_pred eecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEE-EcCCCchh
Confidence 999998888877642 122588899999999999999999999999999999888776543 599999 99999999
Q ss_pred EEEcCCCeEEEE
Q 014104 334 VVGGIDGVLRVL 345 (430)
Q Consensus 334 ~s~~~dg~i~vw 345 (430)
++++.++.+.+|
T Consensus 447 lsadk~~~v~lW 458 (459)
T KOG0288|consen 447 LSADKQKAVTLW 458 (459)
T ss_pred hcccCCcceEec
Confidence 999999999999
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=195.29 Aligned_cols=274 Identities=16% Similarity=0.149 Sum_probs=209.9
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+..+..|.-+|.|++++ ++ +.++++.||+|.-|++.+++....+-....+.-....|-
T Consensus 134 ~~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~------------------- 194 (479)
T KOG0299|consen 134 DFRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPL------------------- 194 (479)
T ss_pred cceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCC-------------------
Confidence 356778999999999994 44 999999999999999999875522211100000000000
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
+.....|..+ ...+++++++.++++|+.|..|.|||.++.+.++.+++|.+.|.+++|-.+ +.+++++.|++|++|+
T Consensus 195 -k~~r~~h~ke-il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~ 272 (479)
T KOG0299|consen 195 -KESRKGHVKE-ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWS 272 (479)
T ss_pred -Ccccccccce-eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEe
Confidence 0000122222 234566677888999999999999999999999999999999999999865 7899999999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
+.....+.++.+ |...|..+....-++.+-+|+.|+++++|++.. +....+.+|.+.+-+++++ +...+++||.+|
T Consensus 273 ~~~~s~vetlyG-Hqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~I--n~~HfvsGSdnG 348 (479)
T KOG0299|consen 273 IDQLSYVETLYG-HQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNG 348 (479)
T ss_pred hhHhHHHHHHhC-CccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEe--cccceeeccCCc
Confidence 999888999988 888999999887788887888999999999953 3334577888899999844 456799999999
Q ss_pred eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeE
Q 014104 341 VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYI 418 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v 418 (430)
.|.+|++...+++.+....++..... -+..+...|++++. ...++++|+.+|.|
T Consensus 349 ~IaLWs~~KKkplf~~~~AHgv~~~~------------------------~~~~~~~Witsla~i~~sdL~asGS~~G~v 404 (479)
T KOG0299|consen 349 SIALWSLLKKKPLFTSRLAHGVIPEL------------------------DPVNGNFWITSLAVIPGSDLLASGSWSGCV 404 (479)
T ss_pred eEEEeeecccCceeEeeccccccCCc------------------------cccccccceeeeEecccCceEEecCCCCce
Confidence 99999999999988887654411000 00122347899888 57889999999999
Q ss_pred EEEEecCC
Q 014104 419 RLWKFNYS 426 (430)
Q Consensus 419 ~vw~~~~~ 426 (430)
|+|.+..|
T Consensus 405 rLW~i~~g 412 (479)
T KOG0299|consen 405 RLWKIEDG 412 (479)
T ss_pred EEEEecCC
Confidence 99999887
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=191.97 Aligned_cols=242 Identities=16% Similarity=0.222 Sum_probs=197.7
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc----ccCCC-----CceeeeeEEEEcCCceEEEecCCeEEEEECC
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV----FPSRE-----GTFMKGLCMRYFDPEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 221 (430)
..+.+..|+|||++|+ ++-||-|.+||..+++.. ....+ ...+.+++++.++..+++|+.||.|++|.++
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 4567789999999999 899999999999887632 11111 1222334444455569999999999999999
Q ss_pred CCeeeEEee-cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 222 SRKCSQIIR-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 222 ~~~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
+|.|++.+. .|+..|+|+.|+.+ ..+++++.|.++++.-+.+|+++..+++ |...|+...|+++|..+++++.||+|
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-HsSyvn~a~ft~dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-HSSYVNEATFTDDGHHIISASSDGTV 372 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC-ccccccceEEcCCCCeEEEecCCccE
Confidence 999999997 89999999999954 7899999999999999999999999998 89999999999999999999999999
Q ss_pred EEEeCCCCceeeeeecC--CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEe
Q 014104 300 SCWDLRTMKSLWETRIS--PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERN 377 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~--~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~ 377 (430)
++|+.++.+++.+++.. ..+|.++..+..+...++++...++|+|.++. |+.++++......
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkRE--------------- 436 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKRE--------------- 436 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCcc---------------
Confidence 99999999999888744 35778877565566789999999999999987 8888888753320
Q ss_pred ecccccCCcccccCCCCCCCCeeE-EEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 378 EGRRLSAGCCIDRIPKTIRPPITC-LAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 378 ~~~~~~~~~~~~~~~~~h~~~v~~-v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
-.+-|.| ++..|.++.+.++|+.+.-+.+.+|+
T Consensus 437 -----------------gGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 437 -----------------GGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred -----------------CCceEEEEecCCCcEEEEEccCcEEEEEEeecCc
Confidence 0123433 44468889999999998888887764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=213.60 Aligned_cols=281 Identities=15% Similarity=0.087 Sum_probs=221.0
Q ss_pred ecc-ccceeEEEe-cCC-eEEEEe--CCCeEEEEecCC------------CeeEEeeecC-CceeEEEEecCCCEEE-EE
Q 014104 109 KAH-SVGVDQCRM-KRG-LILTGV--GDKVMRLWSLEG------------YKCVEEYSLP-NAASLVDFDFDESKIV-GL 169 (430)
Q Consensus 109 ~~h-~~~v~~~~~-~~~-~l~s~~--~dg~i~iwd~~~------------~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~ 169 (430)
-+| ...|.++.. +++ .++||+ .||.++||+.+. .+.+.+...| +.+.++.|++||++|+ |+
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 344 456889988 677 999999 899999998643 1122233333 6788899999999999 88
Q ss_pred eCCeEEEEEcCC--Cc------------------ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe
Q 014104 170 IGTRICIWRRNG--LR------------------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 170 ~~~~i~vwd~~~--~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
.|+.|.+|.... .. .++..|...+ ..++|.+++..+++++.|++|.+||..+.+.+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV-~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDV-LDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcc-ceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence 899999999873 00 1233444443 34677787888999999999999999999999999
Q ss_pred ecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEEecCCC-----CCeEEEEEecCCCEEEEEeC----CCeE
Q 014104 230 RMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVATLRSTDC-----TGIKTLCYNPCSRLVFAGTT----AGYA 299 (430)
Q Consensus 230 ~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~----dg~i 299 (430)
++|.+.|-.+.|.| +++|++-+.|++|++|++.+-...+.+..+.. ..+..+.|+|||++|++... -.++
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 99999999999998 59999999999999999877666666655332 26788999999999997632 3468
Q ss_pred EEEeCCCCceeeeeecCCCceEEEEEeeCC-----CC------------eEEEEcCCCeEEEEEcCCCceEEEEEeccCc
Q 014104 300 SCWDLRTMKSLWETRISPNVVYSLQHLQND-----TS------------TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGS 362 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~-----~~------------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 362 (430)
.|.+-.+.+.-..+-+|.+++.++. |+|. .+ .+|+|+.|++|.||.....+++.....-
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvr-FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--- 323 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVR-FNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--- 323 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEE-eChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh---
Confidence 8888877777788999999999998 8762 11 5788999999999998776665544321
Q ss_pred ceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 363 ASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 363 ~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
....|..++| ||..|+.+|.||+|.+..++.+
T Consensus 324 --------------------------------f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 324 --------------------------------FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred --------------------------------hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 1257899999 5888999999999999998754
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-24 Score=186.48 Aligned_cols=311 Identities=15% Similarity=0.145 Sum_probs=230.8
Q ss_pred eEEEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecC-CCEEEEEeCCeEEEEEcC
Q 014104 104 DIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFD-ESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~-~~~l~~~~~~~i~vwd~~ 180 (430)
..++...|.+.|.+++. -+|.|+||+.|+.|..|| ...+.++..+.++.. ..-.+.+. +..++++..+.|..=+++
T Consensus 279 ~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 279 ISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred EEeEeeecCCceEEEEEecCccEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 34555699999999998 678999999999999999 666666666665332 22233332 335558888888877787
Q ss_pred CCcccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEE
Q 014104 181 GLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (430)
Q Consensus 181 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vw 259 (430)
++..+. ..+.. ....++..++.+.+++++.|+.+++|+ ..+++.+.. ...++.|+.|+|...++.|+..|...+.
T Consensus 358 ~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 358 NGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVL 433 (626)
T ss_pred CCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEE
Confidence 766443 33433 456677778888899999999999999 555555544 4578899999987799999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-Cceeeeee-cCCCceEEEEEeeCCCCeEEEEc
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETR-ISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~-~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
|.++...+..-. ...++++++|+|+|.+||.|+.|+.|++|-+.. +....... .+..+|+.+. ||+|+++|.+-+
T Consensus 434 d~e~~~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLD-wS~Ds~~~~~~S 510 (626)
T KOG2106|consen 434 DTETQDLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLD-WSSDSQFLVSNS 510 (626)
T ss_pred ecccceeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEee-ecCCCceEEecc
Confidence 999866555444 367999999999999999999999999999865 44433332 3338899999 999999999999
Q ss_pred CCCeEEEEEcCCCceEE---EEEeccC-------------------------cceeeeccCCceEEEeecccccCCcccc
Q 014104 338 IDGVLRVLDQNTGEVLS---RCVMDIG-------------------------SASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~---~~~~~~~-------------------------~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
.|-.|..|.....+.+. .++.... ...++++...|.+.++...+.+..+...
T Consensus 511 ~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~h 590 (626)
T KOG2106|consen 511 GDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSH 590 (626)
T ss_pred CceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccce
Confidence 99999999544322221 1111100 1155677777888877776665544444
Q ss_pred cCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEe
Q 014104 390 RIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~ 423 (430)
.. .+|++.|++|+| +...+++.+.|.+|..|++
T Consensus 591 e~-~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 591 EY-GGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ee-ccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 43 679999999999 4566666669999999986
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-25 Score=191.77 Aligned_cols=296 Identities=14% Similarity=0.207 Sum_probs=234.0
Q ss_pred chhhcccCCEeEEEEec----c--ccceeEEEecCC--eEEEEeCCCeEEEEecCC--CeeEEeeecC-CceeEEEEecC
Q 014104 94 HRFALEEGRIDIDQWKA----H--SVGVDQCRMKRG--LILTGVGDKVMRLWSLEG--YKCVEEYSLP-NAASLVDFDFD 162 (430)
Q Consensus 94 ~~~~~~~~~~~~~~l~~----h--~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~--~~~~~~~~~~-~~~~~~~~~~~ 162 (430)
....+.+|.-.+..++. | .++|+++.|.+. .+++|+.||+++||.++. ...++.+... -++...+|.|+
T Consensus 189 ~s~~Lp~~tl~~krlkDaNa~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~ 268 (514)
T KOG2055|consen 189 RSKLLPPGTLNIKRLKDANAAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPN 268 (514)
T ss_pred ccccCCCceeeeEeecccccCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCC
Confidence 34555666666666652 3 468999999655 999999999999998764 3445555543 45667899999
Q ss_pred CC-EEE-EEeCCeEEEEEcCCCccc----ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe
Q 014104 163 ES-KIV-GLIGTRICIWRRNGLRSV----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV 236 (430)
Q Consensus 163 ~~-~l~-~~~~~~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i 236 (430)
|. .++ ++....++.||+++.+.. ....+......+.++++++.|+..+..|.|.+....+++.+..++ -.+.|
T Consensus 269 G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v 347 (514)
T KOG2055|consen 269 GHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVV 347 (514)
T ss_pred CceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEE
Confidence 99 555 777788999999987632 233344455667788899999999999999999999999998887 46889
Q ss_pred EEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC------Cce
Q 014104 237 TSLSLSE-DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT------MKS 309 (430)
Q Consensus 237 ~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~------~~~ 309 (430)
..++|+. +..|++.+.+|.|.+||++...+++.+.....-.-++++.+++|.+||+|+..|.|.|||..+ .++
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkP 427 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKP 427 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCc
Confidence 9999995 477888888999999999999999999852222446677789999999999999999999653 467
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEc--CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGG--IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
+..+..-...|++|. |+++++.|+.+| .+..+++-.+.+......++....
T Consensus 428 ik~~dNLtt~Itsl~-Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~-------------------------- 480 (514)
T KOG2055|consen 428 IKTVDNLTTAITSLQ-FNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT-------------------------- 480 (514)
T ss_pred hhhhhhhheeeeeee-eCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC--------------------------
Confidence 777776678899999 999999998877 567899999887777766654322
Q ss_pred cccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 388 IDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.-+.|+|++| ++.+|+.|.++|.|.+|.+.
T Consensus 481 -------~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 481 -------KVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred -------cccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 1257999999 48999999999999999975
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-24 Score=202.30 Aligned_cols=206 Identities=14% Similarity=0.164 Sum_probs=153.7
Q ss_pred eEEEEeccccceeEEEec-C-C-eEEEEeCCCeEEEEecCCCee--------EEeeecC-CceeEEEEecCCCEEEEEeC
Q 014104 104 DIDQWKAHSVGVDQCRMK-R-G-LILTGVGDKVMRLWSLEGYKC--------VEEYSLP-NAASLVDFDFDESKIVGLIG 171 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~-~-~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 171 (430)
.+..+.+|.+.|.+++|+ + + +|+||+.||+|+|||+.++.. +..+.+| ..+..++|+|++..+
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i----- 140 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI----- 140 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE-----
Confidence 466789999999999994 3 3 999999999999999976421 1222222 223334444433221
Q ss_pred CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
+++++.|++|++||+++++.+..+. |...|.+++|+++ .+|+++
T Consensus 141 ----------------------------------LaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 141 ----------------------------------MCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGT 185 (568)
T ss_pred ----------------------------------EEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEE
Confidence 5788999999999999998777775 6678999999976 888889
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEE-----EEEecCCCEEEEEeCCC----eEEEEeCCC-CceeeeeecC--CC
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKT-----LCYNPCSRLVFAGTTAG----YASCWDLRT-MKSLWETRIS--PN 318 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~~--~~ 318 (430)
+.|+.|++||+++++.+..+.+ |.+.+.+ ..|++++.+|++++.|+ .|++||+++ .+++..+..+ .+
T Consensus 186 s~D~~IrIwD~Rsg~~i~tl~g-H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~ 264 (568)
T PTZ00420 186 CVGKHMHIIDPRKQEIASSFHI-HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASA 264 (568)
T ss_pred ecCCEEEEEECCCCcEEEEEec-ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCcc
Confidence 9999999999999999999887 6654433 33558889999887764 799999995 5566554332 23
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
.+.... .+++|.++++|+.|+.|++|++..+.
T Consensus 265 ~L~p~~-D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 265 PLIPHY-DESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred ceEEee-eCCCCCEEEEEECCCeEEEEEccCCc
Confidence 333332 45568899999999999999998764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-24 Score=190.23 Aligned_cols=264 Identities=14% Similarity=0.091 Sum_probs=195.9
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
.++|++.|+.|++||+.+++.+..+..+..+..++|+++++.++ +..++.+.+||..+++.............+++.+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 82 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHP 82 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECC
Confidence 67899999999999999999999888776677799999999775 4567999999999876543222222233455666
Q ss_pred cCCceEE-EecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC-eEEEEeCCCCceeEEEecCCCCCe
Q 014104 202 FDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG-SIAISGLSSDQRVATLRSTDCTGI 278 (430)
Q Consensus 202 ~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v 278 (430)
.+..+++ ++.++.+++||+.+++.+..+.. ...+.+++++|+ .++++++.++ .+.+||..+++....+. ....+
T Consensus 83 ~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~ 159 (300)
T TIGR03866 83 NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRP 159 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCc
Confidence 6666554 45689999999998887777753 345678999976 6777777664 57788998887766554 23356
Q ss_pred EEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCC-----C--ceEEEEEeeCCCCeEEE-EcCCCeEEEEEcCC
Q 014104 279 KTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISP-----N--VVYSLQHLQNDTSTLVV-GGIDGVLRVLDQNT 349 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~-----~--~v~~l~~~s~~~~~l~s-~~~dg~i~vwd~~~ 349 (430)
..++|+|++++|+++ ..++.|++||+++++.+..+..+. . ....+. ++|+++++++ .+.++.+.+||+.+
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIK-LTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceE-ECCCCCEEEEEcCCCCeEEEEECCC
Confidence 789999999988654 468999999999988776654321 1 234576 8999998654 45577899999998
Q ss_pred CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEe-eCCCeEEEEEecCC
Q 014104 350 GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTT-HNSKYIRLWKFNYS 426 (430)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~-~~Dg~v~vw~~~~~ 426 (430)
++.+..+.. . ..+.+++| +|++|+++ +.+|.|++||+.++
T Consensus 239 ~~~~~~~~~-~------------------------------------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 239 YEVLDYLLV-G------------------------------------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred CcEEEEEEe-C------------------------------------CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 887765432 1 24667777 57777765 56999999999987
Q ss_pred Cc
Q 014104 427 DK 428 (430)
Q Consensus 427 ~~ 428 (430)
+.
T Consensus 282 ~~ 283 (300)
T TIGR03866 282 KV 283 (300)
T ss_pred cE
Confidence 63
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=198.35 Aligned_cols=189 Identities=22% Similarity=0.302 Sum_probs=168.1
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEE
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVAT 269 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 269 (430)
...+|+++.|+..+.|+..|.|-+|++++|-....+ ..|.++|+.++... ++.+++++.+|.+++||..+...+..
T Consensus 451 ~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 451 ATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred eEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee
Confidence 445677778888899999999999999999888777 58999999999974 57899999999999999999888888
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+. ....+.++..+.....++.+..|-.|.++|..+.+.++++.+|.+.|+.+. |||||++|++++.|++|++||+.+
T Consensus 531 l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~-FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 531 LR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMT-FSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred ec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeE-eCCCCcEEEEeecCCcEEEEeccC
Confidence 87 455789999998888999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCC-CeEEEEE
Q 014104 350 GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNS-KYIRLWK 422 (430)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~D-g~v~vw~ 422 (430)
+.++-.+... .+++.+.| +|.+|+|+..| .-|.+|-
T Consensus 608 ~~lID~~~vd-------------------------------------~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 608 GTLIDGLLVD-------------------------------------SPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cceeeeEecC-------------------------------------CcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999877642 35677777 58899999998 5688885
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=189.53 Aligned_cols=276 Identities=14% Similarity=0.179 Sum_probs=200.0
Q ss_pred EeCC-CeEEEEecCCCeeEEeeecCCceeEEEE-ecCCCEEEE--EeCCeEEEEEcCCCcccc-cCCCCceeeeeEEEEc
Q 014104 128 GVGD-KVMRLWSLEGYKCVEEYSLPNAASLVDF-DFDESKIVG--LIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYF 202 (430)
Q Consensus 128 ~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~--~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~ 202 (430)
++.| .++.+||+.+|.....+++......-+. .-.+.++++ .....+.+|.+....... .......+..+...+.
T Consensus 13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 3444 4699999999999988887522221111 123456663 334578999988765433 2222222333444444
Q ss_pred CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCC---------CCceeEEEec
Q 014104 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLS---------SDQRVATLRS 272 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~ 272 (430)
+..++.|+..|.+++|.+.+|..+..+..|-.+|+++.|+. +.+|++|+.||.|.+|++. +-++++.+..
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 55577777999999999999999999999999999999995 4899999999999999864 3456677776
Q ss_pred CCCCCeEEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 273 TDCTGIKTLCYNPCS--RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
|.-+|+.+...+.| .+|++++.|.++++||+..+..+.++.. ...+.+++ .+|-+..++.|+.+|.|.+.++..-
T Consensus 173 -HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~-lDpae~~~yiGt~~G~I~~~~~~~~ 249 (476)
T KOG0646|consen 173 -HTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVA-LDPAERVVYIGTEEGKIFQNLLFKL 249 (476)
T ss_pred -CcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEE-EcccccEEEecCCcceEEeeehhcC
Confidence 88899999988653 5899999999999999999998887664 47889998 9999999999999999999887632
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCC--CeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP--PITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~--~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.... .++..-.+..+++ -.....+|.+ .|+|+++ ||..|++|+.||.|+|||+.+.
T Consensus 250 ~~~~------~~v~~k~~~~~~t--------------~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 250 SGQS------AGVNQKGRHEENT--------------QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred Cccc------ccccccccccccc--------------eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 2100 0000000111111 1112245666 8999888 7999999999999999998754
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=189.40 Aligned_cols=243 Identities=12% Similarity=0.151 Sum_probs=200.8
Q ss_pred eEEEEeccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.+..|+||+..|+.+.++. . .+++++.|..|+||.............| +.+..+..+|.|.|++ ++.|+...+.|+
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDI 332 (506)
T ss_pred hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEc
Confidence 4668899999999999954 3 8999999999999998766555444444 6678899999999999 888999999999
Q ss_pred CCCcccccCCC-Cce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 180 NGLRSVFPSRE-GTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 180 ~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
+++..+..... ... .....+.+++-.+.+|..||.|++||+.++..+..|.+|.++|..++|+.+ -+++++++|+.
T Consensus 333 ~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~ 412 (506)
T KOG0289|consen 333 SSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS 412 (506)
T ss_pred cCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe
Confidence 99886543322 221 233445555555899999999999999999999999999999999999955 78999999999
Q ss_pred EEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC--CCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 256 IAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR--TMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 256 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
|++||++..+...++......++.++.|++.|.+|+.++.|=+|++++-. +..++.++..|.+..+++. |....+++
T Consensus 413 V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~-Fg~~aq~l 491 (506)
T KOG0289|consen 413 VKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVR-FGEHAQYL 491 (506)
T ss_pred EEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceee-ecccceEE
Confidence 99999999888888876455579999999999999999888777777643 4566777888888888888 98899999
Q ss_pred EEEcCCCeEEEEEc
Q 014104 334 VVGGIDGVLRVLDQ 347 (430)
Q Consensus 334 ~s~~~dg~i~vwd~ 347 (430)
+++|.|..++++.+
T Consensus 492 ~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 492 ASTSMDAILRLYAL 505 (506)
T ss_pred eeccchhheEEeec
Confidence 99999999888754
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=199.69 Aligned_cols=340 Identities=15% Similarity=0.160 Sum_probs=222.6
Q ss_pred HHHHHHcccchhhcccCCE---------------eEEEEeccccceeEEEecC-C-eEEEEeC--CCeEEEEecCCCeeE
Q 014104 85 HLEELAMKHHRFALEEGRI---------------DIDQWKAHSVGVDQCRMKR-G-LILTGVG--DKVMRLWSLEGYKCV 145 (430)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~---------------~~~~l~~h~~~v~~~~~~~-~-~l~s~~~--dg~i~iwd~~~~~~~ 145 (430)
-+..++|+++++.+..|.. .+.+|..|.-.|+|++|++ + |+++.+. |-.|.+||....-..
T Consensus 80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~ 159 (1080)
T KOG1408|consen 80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSG 159 (1080)
T ss_pred ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccc
Confidence 4567889999998888772 3456677888999999954 4 8887665 446677876543333
Q ss_pred EeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc-----------------------------------------
Q 014104 146 EEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS----------------------------------------- 184 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~----------------------------------------- 184 (430)
..-+....+..++|+.|+.+++.+...+|++|.++.++.
T Consensus 160 asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~ 239 (1080)
T KOG1408|consen 160 ASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA 239 (1080)
T ss_pred cccccceeEEEEEEccCCceeeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec
Confidence 333333445556666666666655556666665543210
Q ss_pred -----------------------------------------------------ccc-----------------------C
Q 014104 185 -----------------------------------------------------VFP-----------------------S 188 (430)
Q Consensus 185 -----------------------------------------------------~~~-----------------------~ 188 (430)
.-. .
T Consensus 240 qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~ 319 (1080)
T KOG1408|consen 240 QGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSES 319 (1080)
T ss_pred ccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccccc
Confidence 000 0
Q ss_pred CCCceeeeeEEEEcCC--ceEEEecCCeEEEEECCCCeee---EEeecCCCCeEEEEecC------------CCEEEEEe
Q 014104 189 REGTFMKGLCMRYFDP--EAVVGCEDGTARVFDMYSRKCS---QIIRMHCAPVTSLSLSE------------DQLIISGS 251 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~i~~~~~~~------------~~~l~~~~ 251 (430)
........+++.++.. .+.+...|..++|||++.-+.+ ..+-.|...|+.+..-| ...|++++
T Consensus 320 ~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS 399 (1080)
T KOG1408|consen 320 SPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS 399 (1080)
T ss_pred CcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec
Confidence 0001111233333322 2666677888888888764332 33445777777775533 34799999
Q ss_pred CCCeEEEEeCCCCceeEEEe----c--------------------------------CCCCCeEEEEEecCCCEEEEEeC
Q 014104 252 SLGSIAISGLSSDQRVATLR----S--------------------------------TDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~----~--------------------------------~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
.|++|++||+..+..-..+. . .....+.+++++|+|++|++|..
T Consensus 400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr 479 (1080)
T KOG1408|consen 400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDR 479 (1080)
T ss_pred CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCc
Confidence 99999999987522111100 0 01237999999999999999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCceEEEEEeeC---CCCeEEEEcCCCeEEEEEcCC-CceEEEEEeccCcceeeecc--
Q 014104 296 AGYASCWDLRTMKSLWETRISPNVVYSLQHLQN---DTSTLVVGGIDGVLRVLDQNT-GEVLSRCVMDIGSASSSSNK-- 369 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~---~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s-- 369 (430)
-|.+++|++.+.+....++.|...|.++. |+. ..++|++++.|..|+|||+.. ..+++++..|...++.+-+.
T Consensus 480 ~GnlrVy~Lq~l~~~~~~eAHesEilcLe-yS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~ 558 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEYTCFMEAHESEILCLE-YSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACN 558 (1080)
T ss_pred cCceEEEEehhhhhhhheecccceeEEEe-ecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeec
Confidence 99999999999998889999999999999 653 246899999999999999964 45678888887776544433
Q ss_pred ----------CCceEEEeecccccCCcccccCCCCC----CCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCCc
Q 014104 370 ----------VSGVIERNEGRRLSAGCCIDRIPKTI----RPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 370 ----------~d~~v~~~~~~~~~~~~~~~~~~~~h----~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.|..+.....+.-.. -..++.+| ...+..++.| .+++++++.|..|+||++++|++
T Consensus 559 gln~~MiscGADksimFr~~qk~~~---g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 559 GLNRKMISCGADKSIMFRVNQKASS---GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ 630 (1080)
T ss_pred CCceEEEeccCchhhheehhccccC---ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce
Confidence 333332111111111 11122222 1457778885 67899999999999999999875
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=200.84 Aligned_cols=227 Identities=19% Similarity=0.239 Sum_probs=185.9
Q ss_pred cCCCEEE-EEeCCeEEEEEcCCCcc--------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC--eeeEEe
Q 014104 161 FDESKIV-GLIGTRICIWRRNGLRS--------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR--KCSQII 229 (430)
Q Consensus 161 ~~~~~l~-~~~~~~i~vwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~ 229 (430)
|.+++|+ ++.||.|++|++..-.. .++.|... +..+..+..+..+++++.|-+|++|+...+ -+..++
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDW-VNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDW-VNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhH-HhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh
Confidence 3566677 99999999999875332 12222222 122344556667999999999999999877 578889
Q ss_pred ecCCCCeEEEEe-cCC-CEEEEEeCCCeEEEEeCCCC--ceeEEE--------ecCCCCCeEEEEEecCCCEEEEEeCCC
Q 014104 230 RMHCAPVTSLSL-SED-QLIISGSSLGSIAISGLSSD--QRVATL--------RSTDCTGIKTLCYNPCSRLVFAGTTAG 297 (430)
Q Consensus 230 ~~~~~~i~~~~~-~~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg 297 (430)
..|.+-|.|+++ .++ .++++|+-|+.|.+||+.++ +.+..+ ..++..+|++++.++.|..+++|+..+
T Consensus 114 r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek 193 (735)
T KOG0308|consen 114 RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEK 193 (735)
T ss_pred hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCccc
Confidence 999999999999 454 79999999999999999987 333332 213566899999999999999999999
Q ss_pred eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEe
Q 014104 298 YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERN 377 (430)
Q Consensus 298 ~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~ 377 (430)
.+++||.++.+.+..+++|...|..+. .++||..++++|.||+|++||+...+++.++..|..
T Consensus 194 ~lr~wDprt~~kimkLrGHTdNVr~ll-~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e---------------- 256 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTDNVRVLL-VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE---------------- 256 (735)
T ss_pred ceEEeccccccceeeeeccccceEEEE-EcCCCCeEeecCCCceEEeeeccccceeeeEEeccC----------------
Confidence 999999999999999999999999999 999999999999999999999999999999988666
Q ss_pred ecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecC
Q 014104 378 EGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 378 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|+++..+ =.++.+|+.||.|..=|+.+
T Consensus 257 --------------------~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 257 --------------------GVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred --------------------ceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 56776664 34588999999888777765
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-24 Score=191.28 Aligned_cols=303 Identities=13% Similarity=0.133 Sum_probs=225.3
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCE--EEEEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IVGLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~i~vwd~ 179 (430)
+...+.||++.|.|+.. +.| +|++|+.||+|+||.+.+|++++++...+.+.+++|+|.++. |+++.+..+.+.+.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp 471 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNP 471 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCc
Confidence 34578999999999998 455 999999999999999999999999999999999999998775 34666666777665
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEE----EecCCeEEEEECCCCe----eeEEeecCCCCeEEEEec-CCCEEEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVV----GCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLS-EDQLIISG 250 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~-~~~~l~~~ 250 (430)
.-+..+........ +++ ...++.+..|.-...+ -++..-.|...|..+.|+ .+++|++.
T Consensus 472 ~~G~~~e~~~t~el------------l~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 472 IFGDRLEVGPTKEL------------LASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred cccchhhhcchhhh------------hhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEe
Confidence 54422211111110 111 1345677888654221 134444588999999999 56888887
Q ss_pred eC---CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 251 SS---LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 251 ~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
.. ...|.|.++........|.. ..+.|.++.|+|...+|++++.. .|+|||+..++.+..+......|.+++ .+
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~k-skG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~ms-ih 616 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRK-SKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMS-IH 616 (733)
T ss_pred ccCCCcceEEEEecccccccCchhh-cCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeee-ec
Confidence 54 35799999987776666654 56689999999999999998765 599999999888888887778999999 99
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCC-ceEEEEEecc----------CcceeeeccCCceEEEeeccccc---CCccc--ccC
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTG-EVLSRCVMDI----------GSASSSSNKVSGVIERNEGRRLS---AGCCI--DRI 391 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~----------~~~~~~~~s~d~~v~~~~~~~~~---~~~~~--~~~ 391 (430)
|.|..|+.|+.|+.+..||+.-. ++.+++..|. .--.++++|.||.+.++-+.... .+..+ ...
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 99999999999999999999844 4445554444 44477899999998766544322 22222 122
Q ss_pred CCCCCCC----eeEEEEc--CeEEEEeeCCCeEEEE
Q 014104 392 PKTIRPP----ITCLAVG--MKKVVTTHNSKYIRLW 421 (430)
Q Consensus 392 ~~~h~~~----v~~v~~~--~~~l~t~~~Dg~v~vw 421 (430)
..+|... |..+.|+ ..+|+|+|.||+|++|
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 3455544 7777786 5679999999999998
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=184.44 Aligned_cols=220 Identities=14% Similarity=0.249 Sum_probs=172.7
Q ss_pred cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 150 LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
+...+.+.+|++||..++ |+.|..|++.|++.....- ... .+..+..+ .....+++
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks--~~~-------------em~~~~~q--------a~hPvIRT 167 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKS--KPK-------------EMISGDTQ--------ARHPVIRT 167 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhc--chh-------------hhccCCcc--------cCCceEee
Confidence 345677788999999988 8888888888876421100 000 01111111 01246788
Q ss_pred eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee---EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 229 IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV---ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 229 ~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
+-.|..+|+++.|+|. ..|++|+.|++|++||+...... +.|. ...+|.++.|+|.|.+|++|..--++++||+
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~q--d~~~vrsiSfHPsGefllvgTdHp~~rlYdv 245 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQ--DTEPVRSISFHPSGEFLLVGTDHPTLRLYDV 245 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhh--ccceeeeEeecCCCceEEEecCCCceeEEec
Confidence 8889999999999986 89999999999999999764433 2333 3458999999999999999999999999999
Q ss_pred CCCceeee---eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 305 RTMKSLWE---TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 305 ~~~~~~~~---~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
.+.++... -..|.+.|+++. +++.+++-++++.||.|++||--+++++.++...++
T Consensus 246 ~T~QcfvsanPd~qht~ai~~V~-Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~-------------------- 304 (430)
T KOG0640|consen 246 NTYQCFVSANPDDQHTGAITQVR-YSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG-------------------- 304 (430)
T ss_pred cceeEeeecCcccccccceeEEE-ecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC--------------------
Confidence 99887654 346889999999 999999999999999999999999999988874332
Q ss_pred ccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
...|.+..| +++|+++.|.|..|++|.+.+|..+
T Consensus 305 --------------gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 305 --------------GSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML 340 (430)
T ss_pred --------------CceeeeEEEccCCeEEeecCCcceeeeeeecCCceE
Confidence 247888888 7999999999999999999988643
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=194.89 Aligned_cols=233 Identities=15% Similarity=0.215 Sum_probs=195.2
Q ss_pred EEEEeccccceeE-EEec--C-CeEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEEEEeCCeEEEEEc
Q 014104 105 IDQWKAHSVGVDQ-CRMK--R-GLILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIVGLIGTRICIWRR 179 (430)
Q Consensus 105 ~~~l~~h~~~v~~-~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~i~vwd~ 179 (430)
...+.+|.+-|.+ +++. + +.+++|+.|.+|.+|...+..++.++.+|. .+.+++...++..+-++-|.++++|..
T Consensus 50 ~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 50 THAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI 129 (745)
T ss_pred ceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecc
Confidence 3567888888887 8873 3 489999999999999999999999999884 455566666777444999999999998
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~v 258 (430)
..-...+..|+.. +.++...+.. +++|+.|.+|++|. .++.++++.+|++.|+.+++-++..|++++.||.|+.
T Consensus 130 ~~l~~~l~gH~as---VWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 130 GELVYSLQGHTAS---VWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRL 204 (745)
T ss_pred hhhhcccCCcchh---eeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeEeecCCceEEE
Confidence 7766555555544 3455555444 99999999999998 4889999999999999999999988999999999999
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
|++ +|.++..+.+ |..-|+++...+++..++++++|++++||+.. ++.+.+......|+++. +-++|. +++|++
T Consensus 205 w~~-~ge~l~~~~g-htn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~-~L~NgD-Ivvg~S 278 (745)
T KOG0301|consen 205 WDL-DGEVLLEMHG-HTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAK-VLLNGD-IVVGGS 278 (745)
T ss_pred Eec-cCceeeeeec-cceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEE-EeeCCC-EEEecc
Confidence 998 7899999988 88999999988888999999999999999977 67777776666899998 556666 788899
Q ss_pred CCeEEEEEcC
Q 014104 339 DGVLRVLDQN 348 (430)
Q Consensus 339 dg~i~vwd~~ 348 (430)
||.||||..+
T Consensus 279 DG~VrVfT~~ 288 (745)
T KOG0301|consen 279 DGRVRVFTVD 288 (745)
T ss_pred CceEEEEEec
Confidence 9999999876
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=171.39 Aligned_cols=243 Identities=17% Similarity=0.175 Sum_probs=184.5
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEe
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
+.+..+.|++.++.|+ ++.||.+++||+...+.......++. .++.++.+. .+++|+.||.|+.+|+.+++.. .+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~p--lL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~i 90 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAP--LLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QI 90 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCc--eeeeeccCCceEEEeccCceEEEEEecCCcce-ee
Confidence 5677799998877776 89999999999998865444333333 244444333 4999999999999999888765 44
Q ss_pred ecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 230 RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
..|..+|.|+.+++. +.+++|+.|++|++||.+.......+. ....|.++.. .|+.|++|+.+..|.+||+++..
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 569999999999965 899999999999999999877777776 3448988877 67899999999999999999876
Q ss_pred eeeeeec--CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC----ceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 309 SLWETRI--SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG----EVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 309 ~~~~~~~--~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~----~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
.....+. -.-.+.+++ +-|++.=.++++-||.|.+=.++.. +.-..|+.|... .++.-
T Consensus 167 ~~~q~reS~lkyqtR~v~-~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~-------~~~~~-------- 230 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVA-LVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLS-------EKDTE-------- 230 (323)
T ss_pred chhhhccccceeEEEEEE-EecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecc-------cCCce--------
Confidence 5443222 235688888 5567777888999999987666544 445566666551 11110
Q ss_pred cCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCCcC
Q 014104 383 SAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
--.+|++++|+ .+.|+|||.||.|.+||+.+.+++
T Consensus 231 ------------~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 231 ------------IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred ------------EEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 01389999997 456999999999999999887765
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=186.52 Aligned_cols=215 Identities=21% Similarity=0.251 Sum_probs=180.2
Q ss_pred ccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccccc
Q 014104 112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~ 187 (430)
.++|.|++- ++| +|+.|+..|.+++|.+.+|+.+..+..| ..+.++.|+-|+.+++ ++.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------ 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence 467889877 667 6666669999999999999999988777 6778899999988877 77788888877533
Q ss_pred CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC---CEEEEEeCCCeEEEEeCCCC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~~ 264 (430)
++.+..++ +.++++.+..|+-+|+++...++ ..++++|.|.++++||+..+
T Consensus 155 ------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g 208 (476)
T KOG0646|consen 155 ------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG 208 (476)
T ss_pred ------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc
Confidence 34444443 45778889999999999999864 68999999999999999999
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------------ceeeeeecCCC--ceEEEEEe
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----------------KSLWETRISPN--VVYSLQHL 326 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------------~~~~~~~~~~~--~v~~l~~~ 326 (430)
..+.++. ....+.+++.+|.++.+++|+.+|.|.+.++... ..+..+.+|.+ .|+|++ +
T Consensus 209 ~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLa-i 285 (476)
T KOG0646|consen 209 VLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLA-I 285 (476)
T ss_pred eeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEE-E
Confidence 9998887 6779999999999999999999999999887432 23456778887 999999 9
Q ss_pred eCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 327 QNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 327 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+.||..|++|+.||.|+|||+.+.++++++....+
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kg 320 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKG 320 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhcc
Confidence 99999999999999999999999999888874333
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-22 Score=172.46 Aligned_cols=275 Identities=14% Similarity=0.087 Sum_probs=215.1
Q ss_pred EEEEeccc-cceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 105 IDQWKAHS-VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 105 ~~~l~~h~-~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
...|+++. ..|.|++| ++|-++||..+|.|.||+..+.+..+....| +++..+++..+|..|-++.|..|..||-+-
T Consensus 238 ~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 238 QGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNY 317 (626)
T ss_pred eeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccc
Confidence 33455553 57899999 5679999999999999999888777665554 677889999999988899999999999433
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
.+..-...+.....+-.+....+.+++|...+.|..=.++++-.+ ...+|....+.++.+|. +++++++.|+.+++|+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~-~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL-TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE-EEEecccceeeEEcCCChhheeeccCcceEEEcc
Confidence 222222222333344556667777999988888877777665443 45579999999999987 8999999999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
..+++.+.. ...+..|+.|+|.| .+|.|...|...+.|.++...+..-.. ..+++.+. |+|+|.+||.|+.|+
T Consensus 397 --~~k~~wt~~--~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~-ysp~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 397 --DHKLEWTKI--IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVR-YSPDGAFLAVGSHDN 469 (626)
T ss_pred --CCceeEEEE--ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEE-EcCCCCEEEEecCCC
Confidence 456666555 45689999999999 999999999999999998666654444 78899998 999999999999999
Q ss_pred eEEEEEcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCe
Q 014104 341 VLRVLDQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKY 417 (430)
Q Consensus 341 ~i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~ 417 (430)
.|++|-+... ........ .|.++|+.+.| |++++.+-+.|-.
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k-----------------------------------~~gs~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGK-----------------------------------CSGSPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred eEEEEEECCCCcEEEEeee-----------------------------------ecCceeEEeeecCCCceEEeccCceE
Confidence 9999998754 33333322 22368899998 6899999999999
Q ss_pred EEEEE
Q 014104 418 IRLWK 422 (430)
Q Consensus 418 v~vw~ 422 (430)
|..|.
T Consensus 515 iLyW~ 519 (626)
T KOG2106|consen 515 ILYWK 519 (626)
T ss_pred EEEEc
Confidence 99994
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-23 Score=168.96 Aligned_cols=244 Identities=16% Similarity=0.193 Sum_probs=182.8
Q ss_pred CceeEEEEecCCC-EEE-EEeCCeEEEEEcCCC-ccc---ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee
Q 014104 152 NAASLVDFDFDES-KIV-GLIGTRICIWRRNGL-RSV---FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC 225 (430)
Q Consensus 152 ~~~~~~~~~~~~~-~l~-~~~~~~i~vwd~~~~-~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 225 (430)
+.+..++|+|... .++ ++-|++|++|+++.. ... ...+.+. +-.++|..++..+++|+.|+.+++||+.+++.
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~P-vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGP-VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCC-eEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 5677899999544 443 788999999999873 322 2333333 33466777777799999999999999999954
Q ss_pred eEEeecCCCCeEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 014104 226 SQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCW 302 (430)
Q Consensus 226 ~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 302 (430)
..+..|.++|.++.|-++ ..|++||.|.+|+.||.+...++.++. ....++++.. -...++++..++.|.+|
T Consensus 107 -~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv--~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 107 -SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADV--LYPMAVVATAERHIAVY 181 (347)
T ss_pred -eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee--ccceeeehhc--cCceeEEEecCCcEEEE
Confidence 567779999999999854 589999999999999999999999988 5667888776 44688889999999999
Q ss_pred eCCCCceee-eeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC--ceEEEEEeccCcceeeeccCCceEEEee
Q 014104 303 DLRTMKSLW-ETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG--EVLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 303 d~~~~~~~~-~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
+++++.... .... -.-.+.+++ .-.+....+.|+-+|.+-+..+..+ +.-.+|+.|...-. .++.|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va-~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-----~~~~V---- 251 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVA-CFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-----VNDDV---- 251 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEE-EEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC-----CCCce----
Confidence 998754322 1111 124577888 4466666789999999999999876 44556666654110 11111
Q ss_pred cccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCCcC
Q 014104 379 GRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 379 ~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
..|++|+|+ ...|+|+|.||+..+||-+...+|
T Consensus 252 ------------------YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kL 286 (347)
T KOG0647|consen 252 ------------------YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKL 286 (347)
T ss_pred ------------------EEecceEeecccceEEEecCCceEEEecchhhhhh
Confidence 368889996 566999999999999997765444
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=191.08 Aligned_cols=239 Identities=16% Similarity=0.187 Sum_probs=193.8
Q ss_pred eccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC-eeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc
Q 014104 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY-KCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS 184 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~ 184 (430)
.+|+..-+.+++ ++| +|++++.||.|++|+.... +.-.++.. .+..+.++......++ ++.++.|.+|.+..++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEeecccceEEeeccceEEEeeCCCCCc
Confidence 478999999999 566 9999999999999987665 33333332 3455566666666777 89999999999988763
Q ss_pred c-ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC
Q 014104 185 V-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~ 262 (430)
- ......-....+++...+..++.|+.|-.|++.++.+......+++|.++|.++.|+|+ ++||+.+-||.|++||+.
T Consensus 89 ~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 89 DTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred cceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 2 22222233456777878888999999999999999999999999999999999999976 899999999999999999
Q ss_pred CCceeEEEecC-------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec--CCCceEEEEEeeCCCCeE
Q 014104 263 SDQRVATLRST-------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI--SPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 263 ~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~s~~~~~l 333 (430)
++.+..++.+- ....+..++|+|+|..|+....|+.|++|+..+.+....+.. +...+..+. |+|+|+||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~-wsPnG~Yi 247 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ-WSPNGKYI 247 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEE-EcCCCcEE
Confidence 98887666541 123567899999988888888999999999999888777653 334477777 99999999
Q ss_pred EEEcCCCeEEEEEcCC
Q 014104 334 VVGGIDGVLRVLDQNT 349 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~ 349 (430)
|+++.||.|.|||+++
T Consensus 248 AAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDT 263 (933)
T ss_pred eeeccCCcEEEEeccc
Confidence 9999999999999986
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=198.28 Aligned_cols=204 Identities=16% Similarity=0.288 Sum_probs=175.6
Q ss_pred EeEEEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEec-CCCEEE-EEeCCeEEEEEc
Q 014104 103 IDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~ 179 (430)
.++..|.||.+.|..+.|+.+ +|+|+|+|.+||+|++...++++.|.+.+-+++++|+| |.++++ |+-|+.++||++
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI 439 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSI 439 (712)
T ss_pred cchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecccccceEEeec
Confidence 367889999999999999755 99999999999999999999999999999999999999 667777 999999999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--C------CCCeEEEEecCC--CEEEE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--H------CAPVTSLSLSED--QLIIS 249 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~------~~~i~~~~~~~~--~~l~~ 249 (430)
...+.+.-..-...++.+|+.++|+..++|+.+|.+++|+....+....... | ...|+.+.|.|+ +.+++
T Consensus 440 ~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLV 519 (712)
T KOG0283|consen 440 SDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLV 519 (712)
T ss_pred CcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEE
Confidence 9988665555556778899999999999999999999999987766544321 1 237999999976 45788
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
.+.|..|+|+|.++..++.+|++.+.. .-....|+.||++|++++.|..|++|+...
T Consensus 520 TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 520 TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 899999999999999999999875543 345678999999999999999999999854
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-23 Score=179.74 Aligned_cols=223 Identities=22% Similarity=0.322 Sum_probs=183.5
Q ss_pred eccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc
Q 014104 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS 184 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~ 184 (430)
++|.+.|.+++. +|| ||++|+.|..|.||+..+.+.++.+.+| +.+..++|-.....++ ++.|+.+++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 489999999999 567 9999999999999999999999999987 5667799988777777 99999999999987663
Q ss_pred --cccCCCCceeeeeEEEEcCCc--eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 185 --VFPSREGTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260 (430)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd 260 (430)
.+..|+..+ ..+...+.. +-+|+.|+++++|++. .+....+.++.+.+-|++|-++..+++|+.+|.|.+|+
T Consensus 279 vetlyGHqd~v---~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs 354 (479)
T KOG0299|consen 279 VETLYGHQDGV---LGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWS 354 (479)
T ss_pred HHHHhCCccce---eeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEee
Confidence 455555544 444444333 5566699999999993 44445778899999999999888999999999999999
Q ss_pred CCCCceeEEEecCCC-----------CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----ceeeeeecCCCceEEEEE
Q 014104 261 LSSDQRVATLRSTDC-----------TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----KSLWETRISPNVVYSLQH 325 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~~~~~v~~l~~ 325 (430)
+.+.+++.+...+|. ..|++++..|..+++++|+.+|.|++|-+..+ +++..+. -.+.|++++
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~- 432 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLA- 432 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEE-
Confidence 999999888765442 16899999999999999999999999998876 4555555 348899998
Q ss_pred eeCCCCeEEEEc
Q 014104 326 LQNDTSTLVVGG 337 (430)
Q Consensus 326 ~s~~~~~l~s~~ 337 (430)
|+++|+.+++|.
T Consensus 433 f~~sgk~ivagi 444 (479)
T KOG0299|consen 433 FSNSGKRIVAGI 444 (479)
T ss_pred EccCCCEEEEec
Confidence 999999777664
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=166.86 Aligned_cols=226 Identities=13% Similarity=0.153 Sum_probs=177.1
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCC---eeeEEeecCCCCeEEEEec-C--CCEEEEEeCCCeEEEEeCCCCcee--E
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLS-E--DQLIISGSSLGSIAISGLSSDQRV--A 268 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~-~--~~~l~~~~~dg~i~vwd~~~~~~~--~ 268 (430)
..+.+.+..|++++.|++|+|+..+.+ +.+.++.+|.+||+.++|. | +.+|++++.||.|.+|.-.+++-. .
T Consensus 17 a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~ 96 (299)
T KOG1332|consen 17 AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY 96 (299)
T ss_pred hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh
Confidence 345567778999999999999998764 4678999999999999998 5 489999999999999998877542 2
Q ss_pred EEecCCCCCeEEEEEecCC--CEEEEEeCCCeEEEEeCCCC---ceeeeeecCCCceEEEEEeeCC---C----------
Q 014104 269 TLRSTDCTGIKTLCYNPCS--RLVFAGTTAGYASCWDLRTM---KSLWETRISPNVVYSLQHLQND---T---------- 330 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~s~~---~---------- 330 (430)
.... |...|++++|.|.+ -.|++++.||.|.+.+.+.. ........|.-.|+++. +.|. |
T Consensus 97 e~~~-h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs-wapa~~~g~~~~~~~~~~ 174 (299)
T KOG1332|consen 97 EHAA-HSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS-WAPASAPGSLVDQGPAAK 174 (299)
T ss_pred hhhh-hcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee-ecCcCCCccccccCcccc
Confidence 3333 78899999999864 58899999999999998764 22234567888899998 7665 4
Q ss_pred -CeEEEEcCCCeEEEEEcCCC--ceEEEEEeccCcc--------------eeeeccCCceEEEeecccccCCcccccCCC
Q 014104 331 -STLVVGGIDGVLRVLDQNTG--EVLSRCVMDIGSA--------------SSSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 331 -~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~--------------~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
+.|++|+.|+.|+||+..++ +..+++..|.+-+ +++++|.||++.+|+...-....+ ..+..
T Consensus 175 ~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk-~tll~ 253 (299)
T KOG1332|consen 175 VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK-KTLLE 253 (299)
T ss_pred cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc-ccccc
Confidence 57999999999999999876 3345577776533 789999999999988762222211 12222
Q ss_pred CCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 394 TIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 394 ~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.....+..++| .|+.|+.++.|+.|.+|.-+.
T Consensus 254 ~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 254 EFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 34568999998 599999999999999998654
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-22 Score=178.75 Aligned_cols=244 Identities=16% Similarity=0.185 Sum_probs=194.7
Q ss_pred EEeccccceeEEEec--CCeEEEEeCCCeEEEEecCCCe-eEEeeecC--CceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 107 QWKAHSVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYK-CVEEYSLP--NAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
-+.--..+|.+++|+ ++.||.+-.||.|.+|++..+= +...+.++ ..+..++|++.++.+-.+.+|.|.-||+.+
T Consensus 20 f~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 20 FVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEeccc
Confidence 344567899999995 3499999999999999998753 34455554 446679999655555599999999999999
Q ss_pred Ccccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeE--EeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 182 LRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 182 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
.++.. ....+.....++..+.+..+++|+.||.+..++...++... .+...++.|.+++|+|+ ..+++|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 88654 33455566777888888889999999988888887776543 34456789999999987 4599999999999
Q ss_pred EEeCCCCceeEEEec-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 258 ISGLSSDQRVATLRS-------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 258 vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
+||..+++.++.... ....-|.++.|-.++ .+++|..-|+|.+||...+.++..+..|.+.|.+++ ..+++
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La-v~~~~ 257 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA-VADNE 257 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE-EcCCC
Confidence 999999988773221 012257777777554 689999999999999999999999999999999999 99999
Q ss_pred CeEEEEcCCCeEEEEEcCCCce
Q 014104 331 STLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.++++++.|+.|..|...+...
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CeEEEccCCCceEEEEecCCcc
Confidence 9999999999999888775543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=166.15 Aligned_cols=282 Identities=17% Similarity=0.227 Sum_probs=194.2
Q ss_pred EEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCCCe------eE----Eee--ec---C-CceeEEEEec-CCCEE
Q 014104 107 QWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYK------CV----EEY--SL---P-NAASLVDFDF-DESKI 166 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~------~~----~~~--~~---~-~~~~~~~~~~-~~~~l 166 (430)
....|.+.|+++.+. .| ++++|+.||.|.+||++... .+ ..+ .+ | -.+..+.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 345688999999984 34 99999999999999997532 11 101 11 1 1234456666 44445
Q ss_pred E-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcC---CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec
Q 014104 167 V-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD---PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 167 ~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~ 242 (430)
. ++.|.++++||.++.+......-...+...++++.. -.+++|..+-.|++-|+.+|.+-+++.+|.+.|.++.|+
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 5 888999999999998754332222222333344332 237888889999999999999999999999999999999
Q ss_pred CC--CEEEEEeCCCeEEEEeCCCC-ceeEEEe-------------cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 243 ED--QLIISGSSLGSIAISGLSSD-QRVATLR-------------STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 243 ~~--~~l~~~~~dg~i~vwd~~~~-~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
|. -.+++|+.||.|++||++.. .+...+. ..|.+.|..++|+.++.++++.+.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 86 47889999999999999864 3333332 23566899999999999999999999999999987
Q ss_pred Cceeeeee---cCCCce-EEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 307 MKSLWETR---ISPNVV-YSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 307 ~~~~~~~~---~~~~~v-~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
|+....-. .|...+ ..+..-+.+...++---.++.+.++++-+|..++.+..|..
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k--------------------- 336 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK--------------------- 336 (397)
T ss_pred CcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccc---------------------
Confidence 75321110 111000 00000122333344344568888999888888888876533
Q ss_pred cCCcccccCCCCCCCCeeEEEEcCe--EEEEeeCCCeEEEEEec
Q 014104 383 SAGCCIDRIPKTIRPPITCLAVGMK--KVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~~~~--~l~t~~~Dg~v~vw~~~ 424 (430)
.|.|.++.++ ...+|+.|+.|..|-..
T Consensus 337 ---------------~i~c~~~~~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 337 ---------------RINCAAYRPDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred ---------------eeeEEeecCchhhhhccccCCcccccccc
Confidence 5666666433 37788888888888653
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=191.70 Aligned_cols=269 Identities=17% Similarity=0.215 Sum_probs=197.1
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc------ccCCCCceeee--eEEE-EcCCceEEEecCCeEEEEECCC
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV------FPSREGTFMKG--LCMR-YFDPEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~------~~~~~~~~~~~--~~~~-~~~~~l~~~~~dg~i~vwd~~~ 222 (430)
.....++..++-..++......+.+|.++..... +.........+ +.|. ...+.|++++.+|.|.+||+..
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 3455566677777777666667777776543211 11111111111 1121 2344499999999999999976
Q ss_pred ---CeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC-CCEEEEEeCC
Q 014104 223 ---RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC-SRLVFAGTTA 296 (430)
Q Consensus 223 ---~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 296 (430)
.+.+..+..|...+++++|++- ++|++|+.||+|++||++..+...++.+ ....|+.|.|+|. +..++++...
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cchhhhceeeccCCCceEEEecCC
Confidence 5566788899999999999953 7999999999999999999999888887 6779999999984 6788999999
Q ss_pred CeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-----------EEEEEeccCcc-
Q 014104 297 GYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-----------LSRCVMDIGSA- 363 (430)
Q Consensus 297 g~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-----------~~~~~~~~~~~- 363 (430)
|.+.+||++. .++...+..|.++|.++. |+|++.+|||||.|++|+|||..+++. +..++..+...
T Consensus 199 G~lqlWDlRqp~r~~~k~~AH~GpV~c~n-whPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLTAHNGPVLCLN-WHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred ceEEEeeccCchhHHHHhhcccCceEEEe-ecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 9999999986 456778899999999999 999999999999999999999985432 22222223222
Q ss_pred eeeecc--CCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeCCCeEEEEEecC
Q 014104 364 SSSSNK--VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 364 ~~~~~s--~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+++.+ .|-.|.+|++..-.- .......|++.++.++|+ ...+.+++.||+|..-.+++
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYI---P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYI---PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred hhhhhhccccceEEEEeeccccc---cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 233332 455677777765321 223346799999999994 46689999999886554443
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-25 Score=199.05 Aligned_cols=228 Identities=23% Similarity=0.283 Sum_probs=198.2
Q ss_pred EEEeccccceeEEEe-c-CCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCC
Q 014104 106 DQWKAHSVGVDQCRM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGL 182 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 182 (430)
+.+-.|...|.|+.. . ...+++|+.|..+.+|.+..-..+..+.+| ..+.++.|+++.
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E------------------- 82 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSE------------------- 82 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcch-------------------
Confidence 356678999999887 3 338999999999999998776666566655 334444444332
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~ 261 (430)
..|++|+.+|+|++||++.++.++++.+|...+.++.|+|- .++++|+.|+.+++||+
T Consensus 83 ---------------------~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~ 141 (825)
T KOG0267|consen 83 ---------------------RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI 141 (825)
T ss_pred ---------------------hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence 22788999999999999999999999999999999999986 78899999999999999
Q ss_pred CCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 262 SSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
+...+.+.+.+ |...|..+.|+|+|++++.|+.|..++|||...|+.+.+|..|.+.+.++. |+|..-++++|+.|++
T Consensus 142 Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle-~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 142 RKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLE-FHPLEVLLAPGSSDRT 219 (825)
T ss_pred hccCceeeecC-CcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccc-cCchhhhhccCCCCce
Confidence 98889999998 888999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
|++||+++.+.+........++....+.+|+...
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~ 253 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV 253 (825)
T ss_pred eeeeccceeEEeeccCCccCCceeeeecCCceee
Confidence 9999999988888888777888888888888764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=186.31 Aligned_cols=240 Identities=16% Similarity=0.195 Sum_probs=197.4
Q ss_pred cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 150 LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
+..+...+++.++|+.|+ ++.||.|++|+.................+.++...+..+++|+.+++|.+|.+.+++.-..
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~i 91 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTI 91 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccce
Confidence 335667799999999988 8899999999987653211111113344577777788899999999999999998887666
Q ss_pred eecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 229 IRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM 307 (430)
Q Consensus 229 ~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 307 (430)
+...+-++++++++ .+++++.|++|-.|++-+.........+++ |.++|.++.|+|++++||+.+.||.|++||+.++
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 66677899999999 458999999999999999999999999998 9999999999999999999999999999999998
Q ss_pred ceeeeeecC--------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeec
Q 014104 308 KSLWETRIS--------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEG 379 (430)
Q Consensus 308 ~~~~~~~~~--------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~ 379 (430)
.+...+.+- ...+..++ |+|+|..++..+.|+.|++|+..+.+....+...
T Consensus 171 ~~~~tl~~v~k~n~~~~s~i~~~~a-W~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-------------------- 229 (933)
T KOG1274|consen 171 ILSKTLTGVDKDNEFILSRICTRLA-WHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-------------------- 229 (933)
T ss_pred hhhhhcccCCccccccccceeeeee-ecCCCCeEEeeccCCeEEEEccCCceeheeeccc--------------------
Confidence 776655432 23344555 9999888988999999999999998888877652
Q ss_pred ccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 380 RRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 380 ~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|...+.+++| +|+|||+++.||.|.|||+++
T Consensus 230 --------------~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 --------------LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred --------------ccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 23344788888 599999999999999999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=176.22 Aligned_cols=247 Identities=13% Similarity=0.156 Sum_probs=186.1
Q ss_pred eEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc
Q 014104 104 DIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 183 (430)
++.+|+.|.+.|..+++..+.+++++.|.+|+.|.++. ..++++.+.....-+.-+..++. .++....|.|||.+...
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~-FaTcGe~i~IWD~~R~~ 178 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSV-FATCGEQIDIWDEQRDN 178 (433)
T ss_pred hhheeecccCceeeEEecccceEEecCCcceeeeeccC-Ccceeeecccccccccccccccc-ccccCceeeecccccCC
Confidence 57789999999999999889999999999999999876 57777776554444444433333 35556679999987655
Q ss_pred ccccCCCCc-eeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 184 SVFPSREGT-FMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 184 ~~~~~~~~~-~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
.+....-+. ....+.+.+.... |++++.|+.|.+||++++.+++.+. -...-+.++|+|. -.+++|++|..++.+|
T Consensus 179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYD 257 (433)
T ss_pred ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehh
Confidence 432222111 1122333333333 7788899999999999999887665 2345678999986 5788999999999999
Q ss_pred CCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec-CCCceEEEEEeeCCCCeEEEEcC
Q 014104 261 LSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI-SPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 261 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
++... ++....+ |.+.|.+++|+|.|+-+++|+.|.+|+||..+.+.....+.. .-..|.++. ||.|.+++++||.
T Consensus 258 mR~l~~p~~v~~d-hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk-~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 258 MRNLSRPLNVHKD-HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVK-YSMDSKYIISGSD 335 (433)
T ss_pred hhhhcccchhhcc-cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEE-EeccccEEEecCC
Confidence 98654 4555555 888999999999999999999999999999987654433221 126799999 9999999999999
Q ss_pred CCeEEEEEcCCCceEEE
Q 014104 339 DGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~ 355 (430)
|+.|++|.....+.+..
T Consensus 336 d~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 336 DGNVRLWKAKASEKLGV 352 (433)
T ss_pred CcceeeeecchhhhcCC
Confidence 99999998775544433
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=179.27 Aligned_cols=223 Identities=15% Similarity=0.187 Sum_probs=169.5
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 224 (430)
..+..+++.|.|..++ |+.|..|++||+.+... .+...+.|....+.++..+..|++.+.....+++|-...+
T Consensus 168 k~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~ 247 (641)
T KOG0772|consen 168 KIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFE 247 (641)
T ss_pred eEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCce
Confidence 3456689999999999 99999999999987542 3445667778888888888888888888899999964333
Q ss_pred eeE------------EeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce-eEEEe----cCCCCCeEEEEEec
Q 014104 225 CSQ------------IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR-VATLR----STDCTGIKTLCYNP 285 (430)
Q Consensus 225 ~~~------------~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~-~~~~~----~~~~~~v~~~~~~~ 285 (430)
... .-++|...++|.+|+|. +.|++++.||++++||+...+. ...+. +...-+++.++|+|
T Consensus 248 ~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr 327 (641)
T KOG0772|consen 248 IVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR 327 (641)
T ss_pred eeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC
Confidence 222 23589999999999985 7899999999999999985432 23332 11233899999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCc--e-eeeeecCCC--ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC-ceEEEEEec
Q 014104 286 CSRLVFAGTTAGYASCWDLRTMK--S-LWETRISPN--VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG-EVLSRCVMD 359 (430)
Q Consensus 286 ~~~~l~~~~~dg~i~i~d~~~~~--~-~~~~~~~~~--~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~ 359 (430)
+|+++|+|+.||.|.+|+..... + ...-..|.. .|+++. ||++|++|++-+.|+++++||++.. +++....+-
T Consensus 328 dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~-FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL 406 (641)
T KOG0772|consen 328 DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSIS-FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGL 406 (641)
T ss_pred CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEE-eccccchhhhccCCCceeeeeccccccchhhhcCC
Confidence 99999999999999999986432 1 223456765 899999 9999999999999999999999864 445544432
Q ss_pred cC--cceeeeccCCceEE
Q 014104 360 IG--SASSSSNKVSGVIE 375 (430)
Q Consensus 360 ~~--~~~~~~~s~d~~v~ 375 (430)
.. .-.-.++|+|..+.
T Consensus 407 ~t~~~~tdc~FSPd~kli 424 (641)
T KOG0772|consen 407 PTPFPGTDCCFSPDDKLI 424 (641)
T ss_pred CccCCCCccccCCCceEE
Confidence 22 12345666666553
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-21 Score=151.30 Aligned_cols=243 Identities=14% Similarity=0.217 Sum_probs=188.1
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeE-----EeeecC-CceeEEEEecCC----CEEE--
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV-----EEYSLP-NAASLVDFDFDE----SKIV-- 167 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~-~~~~~~~~~~~~----~~l~-- 167 (430)
....+.-+.|.+.|+|.+| +.| ++++|++|.+|++--.+...+. .++..| +.+.-++|-.+. ..|+
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 3445566789999999999 556 9999999999999765533221 234444 556778886543 3455
Q ss_pred EEeCCeEEEEEcCCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--C-----CCCeEE
Q 014104 168 GLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--H-----CAPVTS 238 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~-----~~~i~~ 238 (430)
+..|..|++=|-.+++ ..+..+.+++..... +.+-.+++|+.|.+|++||++-..++.++.. | .+.|.+
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilalys--wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEEEE--ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 4445666666666655 456677777643333 3445599999999999999998888877642 2 357899
Q ss_pred EEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----ceeeee
Q 014104 239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----KSLWET 313 (430)
Q Consensus 239 ~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----~~~~~~ 313 (430)
+++.|. .++++|-.|....+||++-++.++.+.. |...|.|+.|+|...++.+++.|..|++-|+... -++...
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p-hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv 315 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP-HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVV 315 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCC-CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEE
Confidence 999975 8999999999999999999999999987 8889999999999999999999999999998742 223445
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
..|.+.+..+. |+|..--+++.+.|.++.+|-+.
T Consensus 316 ~ehkdk~i~~r-wh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 316 AEHKDKAIQCR-WHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EeccCceEEEE-ecCccceeeeccCcceEEEeccC
Confidence 67888888888 89988889999999999999764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-21 Score=172.04 Aligned_cols=254 Identities=11% Similarity=0.073 Sum_probs=186.7
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eE-EEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICI 176 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~v 176 (430)
...++.+.+|.. +.++++ +++ .+ ++++.++.|++||..+++.+..+..+.....++++++++.++ + ..++.+.+
T Consensus 21 ~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 21 LEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred CceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 345667776654 567888 555 44 677789999999999998887777665567789999999876 3 35789999
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC-eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE-EEeCC
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG-TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII-SGSSL 253 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~d 253 (430)
||+.+.+.+.....+.....+.+.+++..++++..++ .+.+||..+++.+..+.. ...+..++|+++ +.++ ++..+
T Consensus 100 ~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 100 IDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred EECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCC
Confidence 9998876443322222234466677777788777764 577889988877665542 334578899976 5564 44568
Q ss_pred CeEEEEeCCCCceeEEEecCC------CCCeEEEEEecCCCEEEE-EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEe
Q 014104 254 GSIAISGLSSDQRVATLRSTD------CTGIKTLCYNPCSRLVFA-GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHL 326 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 326 (430)
+.|++||+++++.+..+.... ......++|+|+++++++ .+.++.+.+||+++++.+..+. +...+.++. |
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~-~ 256 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLA-F 256 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEE-E
Confidence 999999999998877664211 113456889999998654 3456789999999888776553 345788998 9
Q ss_pred eCCCCeEEEE-cCCCeEEEEEcCCCceEEEEEec
Q 014104 327 QNDTSTLVVG-GIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 327 s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
+|+|++|+++ +.+|.|++||+.+++++.++..+
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~ 290 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG 290 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc
Confidence 9999999886 46899999999999999999764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-23 Score=177.72 Aligned_cols=262 Identities=15% Similarity=0.230 Sum_probs=201.0
Q ss_pred EeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE--EEeCCeEEEEEcCCCc---ccccCCCCceeeeeEE
Q 014104 128 GVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV--GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCM 199 (430)
Q Consensus 128 ~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~---~~~~~~~~~~~~~~~~ 199 (430)
++...++++||....+....+..+ .++..+.|+.....++ .+.|..+++|.-.+.. .......+....++..
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~ 87 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVAC 87 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhh
Confidence 333447999998876655555432 4455566666665444 4557788899877652 2333334443334444
Q ss_pred EEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCe
Q 014104 200 RYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGI 278 (430)
Q Consensus 200 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 278 (430)
..++-++++|+..+.|+|||++...+.+.+++|+..|+++.++ .+.+|++++..|.|.+..+.++.....|.......|
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSV 167 (673)
T ss_pred hhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeE
Confidence 4455669999999999999999777888899999999999999 568999999999999999999988888875444567
Q ss_pred EEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeee-eecCCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcCCCceEEE
Q 014104 279 KTLCYNPCSRLV-FAGTTAGYASCWDLRTMKSLWE-TRISPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 279 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~ 355 (430)
.-+.|+|..+++ .+++.+|.|.+||+....++.. .+.|..+...++ |+|.. .+|++.+.|..|.+||..+.+....
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gic-fspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGIC-FSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcce-ecCCccceEEEecccceEEEeecccccccce
Confidence 799999987754 5889999999999998877765 457888999998 87765 4778999999999999997776666
Q ss_pred EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+.. ..+.++|+| +|.+|+.|...|.|..||+...+
T Consensus 247 l~y-------------------------------------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 247 LTY-------------------------------------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eee-------------------------------------cCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 653 236778888 58889999999999999987654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=191.34 Aligned_cols=241 Identities=13% Similarity=0.121 Sum_probs=188.0
Q ss_pred CCCCceeeeeEEEEcCCceEEEe--cCCeEEEEECCC------------CeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGC--EDGTARVFDMYS------------RKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~------------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
.|.+.....+.+.+++..+++|+ .||.+.+|+.+. .+.+..+..|.+.|+|+.|+++ .+||+|++
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD 89 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD 89 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence 34444344455556666699999 899999998652 2345567789999999999976 89999999
Q ss_pred CCeEEEEeCCC------------------CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 253 LGSIAISGLSS------------------DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 253 dg~i~vwd~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
|+.|.+|+... -+.+..+.+ |...|..++|+|++.+|++++.|++|.+||.++.+.+..++
T Consensus 90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~ 168 (942)
T KOG0973|consen 90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-HDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR 168 (942)
T ss_pred cceEEEeeecccCCcccccccccccccceeeEEEEEec-CCCccceeccCCCccEEEEecccceEEEEccccceeeeeee
Confidence 99999999762 124566777 89999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc------eeeeccCCceEEEee-----c----
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA------SSSSNKVSGVIERNE-----G---- 379 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~------~~~~~s~d~~v~~~~-----~---- 379 (430)
+|.+.|-++. |.|-|+|+++-+.|++|+||++.+....+.+..+.+.. +=.++||||...... +
T Consensus 169 ~H~s~VKGvs-~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 169 GHQSLVKGVS-WDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred cccccccceE-ECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 9999999999 99999999999999999999988777777776654422 446889999763110 0
Q ss_pred cccc-CCcccccCCCCCCCCeeEEEEc-------Ce------------EEEEeeCCCeEEEEEecCCCcCC
Q 014104 380 RRLS-AGCCIDRIPKTIRPPITCLAVG-------MK------------KVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 380 ~~~~-~~~~~~~~~~~h~~~v~~v~~~-------~~------------~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
.-+. .........-+|..+++++.|+ .. .+|+||.|++|.||.....++++
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 0000 0112223346899999999993 12 57899999999999988777654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=185.00 Aligned_cols=270 Identities=14% Similarity=0.187 Sum_probs=183.0
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEe--eecC-CceeEEEEecCCCEEE--EEeCCeEEEE
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE--YSLP-NAASLVDFDFDESKIV--GLIGTRICIW 177 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~--~~~~~~i~vw 177 (430)
++....|.+.|..+.+ +.. .|++++.|.++++||+++.++... +.+| ..+..++|.+.+..++ |+.||.|.||
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illW 172 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLW 172 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEE
Confidence 4566789999999999 533 999999999999999999888766 5555 5677789998665544 7888888888
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCe---EEEEECCCCeeeEEeecCC----CCeEEEEecCCCEEEEE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGT---ARVFDMYSRKCSQIIRMHC----APVTSLSLSEDQLIISG 250 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~---i~vwd~~~~~~~~~~~~~~----~~i~~~~~~~~~~l~~~ 250 (430)
|+.-...-....... -+++...+. .+.- .+.+..-+.+. +.|+.+.|-++..|+++
T Consensus 173 D~R~n~~d~~e~~~~-------------~~~~~~n~~ptpskp~----~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSa 235 (720)
T KOG0321|consen 173 DCRCNGVDALEEFDN-------------RIYGRHNTAPTPSKPL----KKRIRKWKAASNTIFSSVTVVLFKDESTLASA 235 (720)
T ss_pred EEeccchhhHHHHhh-------------hhhccccCCCCCCchh----hccccccccccCceeeeeEEEEEeccceeeec
Confidence 876433100000000 011111110 0000 01111222232 23666777666889998
Q ss_pred eC-CCeEEEEeCCCCceeEEEec-------CC---CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--ceeeeeecCC
Q 014104 251 SS-LGSIAISGLSSDQRVATLRS-------TD---CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM--KSLWETRISP 317 (430)
Q Consensus 251 ~~-dg~i~vwd~~~~~~~~~~~~-------~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~ 317 (430)
+. |+.|+|||+++......... .+ ...+.++..+..|.+|++.+.|+.|++|++... .++..+.++.
T Consensus 236 ga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~ 315 (720)
T KOG0321|consen 236 GAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL 315 (720)
T ss_pred cCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc
Confidence 87 99999999997665433211 01 236888888888999999999999999999863 3455555553
Q ss_pred C-ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 318 N-VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 318 ~-~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
. ..+--...+|++.++++|+.|...++|.+.+.+.--.+ ..+|.
T Consensus 316 ~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~-----------------------------------l~Ght 360 (720)
T KOG0321|consen 316 NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL-----------------------------------LLGHT 360 (720)
T ss_pred cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh-----------------------------------hhCcc
Confidence 2 22222237899999999999999999999865432111 24567
Q ss_pred CCeeEEEE---cCeEEEEeeCCCeEEEEEecCC
Q 014104 397 PPITCLAV---GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 397 ~~v~~v~~---~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
-.|++++| +-.-++|+++|.+++||++..+
T Consensus 361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 79999999 3455888899999999999654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-23 Score=181.77 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=193.3
Q ss_pred eecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc-----c-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC
Q 014104 148 YSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-----F-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 221 (430)
+.+.+-+..+.++...+.++.+..|.|+|||+...... + ....+.....+-+.+++..|++|++-.++.|||+.
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 33334455588888889999999999999999865321 1 12234445556667778889999999999999998
Q ss_pred CCeeeE--EeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 014104 222 SRKCSQ--IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 222 ~~~~~~--~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
....-. .+....-...+++.+|+ +..+++..||.|.|||+.+...++.|.+ |...+.|+.++++|..|.+|+-|.+
T Consensus 496 apTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-htDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC-CCCCceeEEecCCCceeecCCCccc
Confidence 665432 23322345678888988 7888899999999999999999999998 8889999999999999999999999
Q ss_pred EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEee
Q 014104 299 ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
|+.||+++++.+....- .+.|+++. +.|++.+|+.|-.++.+-|-... +...+.+..
T Consensus 575 vRcWDlregrqlqqhdF-~SQIfSLg-~cP~~dWlavGMens~vevlh~s-kp~kyqlhl-------------------- 631 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDF-SSQIFSLG-YCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHL-------------------- 631 (705)
T ss_pred eeehhhhhhhhhhhhhh-hhhheecc-cCCCccceeeecccCcEEEEecC-Cccceeecc--------------------
Confidence 99999999887765442 37899998 99999999999999988887765 333333332
Q ss_pred cccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCcCC
Q 014104 379 GRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 379 ~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
|.+.|.++.| .|+++++.|.|+.+..|....|..++
T Consensus 632 ----------------heScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 632 ----------------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred ----------------cccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 5568999999 59999999999999999998887653
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=160.91 Aligned_cols=262 Identities=12% Similarity=0.162 Sum_probs=175.0
Q ss_pred eccccceeEEEec-CC-eEEEEeCCCeEEEEecCCC----eeEEeeecCCc-eeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 109 KAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGY----KCVEEYSLPNA-ASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 109 ~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+|.+-|.++.|+ -| .+|||+.|++|+|||.... .+....+.|++ +..+.|.+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAh-------------------- 69 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAH-------------------- 69 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecC--------------------
Confidence 4799999999994 45 9999999999999996542 23333333321 11122211
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC---------eeeEEeecCCCCeEEEEecCC---CEEEE
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR---------KCSQIIRMHCAPVTSLSLSED---QLIIS 249 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~i~~~~~~~~---~~l~~ 249 (430)
..+|+.+++++.|+++.||.-... ....++....+.|+++.|.|. -.+++
T Consensus 70 ------------------PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~ 131 (361)
T KOG2445|consen 70 ------------------PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA 131 (361)
T ss_pred ------------------ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE
Confidence 114555889999999999974211 133456667789999999984 57999
Q ss_pred EeCCCeEEEEeCCCCcee------EEEe------cCCCCCeEEEEEecCC---CEEEEEeCC-----CeEEEEeCCCC--
Q 014104 250 GSSLGSIAISGLSSDQRV------ATLR------STDCTGIKTLCYNPCS---RLVFAGTTA-----GYASCWDLRTM-- 307 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~------~~~~------~~~~~~v~~~~~~~~~---~~l~~~~~d-----g~i~i~d~~~~-- 307 (430)
++.||.++||+.-..-.+ ..+. +.+..+-.|+.|+|.. .+|+.|+.+ +.++||....+
T Consensus 132 ~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~r 211 (361)
T KOG2445|consen 132 ASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGR 211 (361)
T ss_pred eccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcc
Confidence 999999999987543222 1111 2244577899999753 578888766 46888876542
Q ss_pred --ceeeeeecCCCceEEEEEeeCCC----CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 308 --KSLWETRISPNVVYSLQHLQNDT----STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 308 --~~~~~~~~~~~~v~~l~~~s~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
..+.++.+|.++|+.++ |.|+- ..|++++.|| |+||++..... .+.. .+ ..+...-+.+.+
T Consensus 212 Kw~kva~L~d~~dpI~di~-wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s--~i~~-ee---~~~~~~~~~l~v----- 278 (361)
T KOG2445|consen 212 KWLKVAELPDHTDPIRDIS-WAPNIGRSYHLLAVATKDG-VRIFKVKVARS--AIEE-EE---VLAPDLMTDLPV----- 278 (361)
T ss_pred eeeeehhcCCCCCcceeee-eccccCCceeeEEEeecCc-EEEEEEeeccc--hhhh-hc---ccCCCCccccce-----
Confidence 34567889999999999 88863 4889999999 99999873211 0100 00 000000001111
Q ss_pred ccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
........|++.|+.+.|+ |..|++.|+||.||+|+....
T Consensus 279 -----~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 279 -----EKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred -----EEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 1112236799999999996 999999999999999986543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=165.04 Aligned_cols=201 Identities=16% Similarity=0.170 Sum_probs=164.8
Q ss_pred CCceEEEecCCeEEEEECCCCe------------ee---EEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCc
Q 014104 203 DPEAVVGCEDGTARVFDMYSRK------------CS---QIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~------------~~---~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~ 265 (430)
+.++++|+.||.|.+||++... ++ ..-.+|.-.|.++.|-| + .++.+++.|.+++|||..+.+
T Consensus 56 grymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ 135 (397)
T KOG4283|consen 56 GRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ 135 (397)
T ss_pred ceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce
Confidence 4449999999999999997532 11 01136778999999987 3 799999999999999999999
Q ss_pred eeEEEecCCCCCeEEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEEcCCCe
Q 014104 266 RVATLRSTDCTGIKTLCYNPCS---RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVGGIDGV 341 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~ 341 (430)
....|+ .++.|++-+++|-. -++|+|..+-.|++.|+.+|...+.+.+|.+.|.++. |+|... .|++|+.||.
T Consensus 136 ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~-Wsp~~e~vLatgsaDg~ 212 (397)
T KOG4283|consen 136 EAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE-WSPSSEWVLATGSADGA 212 (397)
T ss_pred eeEEee--cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE-eccCceeEEEecCCCce
Confidence 988888 67788888888843 4788899999999999999999999999999999999 888776 5689999999
Q ss_pred EEEEEcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeE
Q 014104 342 LRVLDQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYI 418 (430)
Q Consensus 342 i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v 418 (430)
|++||++.. -+...+..|.... .++.....+|.+.|++++| ++.++++++.|..+
T Consensus 213 irlWDiRrasgcf~~lD~hn~k~----------------------~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 213 IRLWDIRRASGCFRVLDQHNTKR----------------------PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRI 270 (397)
T ss_pred EEEEEeecccceeEEeecccCcc----------------------CccccccccccceeeeeeecccchhhhhccCccce
Confidence 999999865 5677777665410 0011133578899999999 69999999999999
Q ss_pred EEEEecCCCc
Q 014104 419 RLWKFNYSDK 428 (430)
Q Consensus 419 ~vw~~~~~~~ 428 (430)
++|+...|+.
T Consensus 271 r~wn~~~G~n 280 (397)
T KOG4283|consen 271 RVWNMESGRN 280 (397)
T ss_pred EEeecccCcc
Confidence 9999988764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-21 Score=176.30 Aligned_cols=238 Identities=16% Similarity=0.252 Sum_probs=196.6
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc---ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 226 (430)
+.++.+++++.+.+.|+ +-.+|.|.+|++...- .++..+.......++|+ .+..|.+.+.+|.|.-||+.+++..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCcee
Confidence 56788899999999988 8889999999998753 45566666666777887 5666999999999999999999999
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS-TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
..+....++|++++.+|. ..++.|++||.+..++...++......- ...+.|.+++|+|++..+++|+.||.|++||.
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~ 183 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDV 183 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEc
Confidence 999988999999999976 7889999999888888887776544321 14579999999999999999999999999999
Q ss_pred CCCceeeee-------ec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEE
Q 014104 305 RTMKSLWET-------RI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 305 ~~~~~~~~~-------~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
..+..+... .. ...-|+++.+. ....|++|..-|+|.+||...|.+++.+..|.
T Consensus 184 ~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~---------------- 245 (691)
T KOG2048|consen 184 KSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHD---------------- 245 (691)
T ss_pred CCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhh----------------
Confidence 998776521 11 23468888844 33579999999999999999999998887644
Q ss_pred eecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 377 NEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+.|.|++. ++.+++++|.|+.|.-|...+++
T Consensus 246 --------------------adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 246 --------------------ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred --------------------cceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 48888888 46899999999999998887664
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=172.57 Aligned_cols=227 Identities=18% Similarity=0.316 Sum_probs=169.0
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCccc-----cc---------------CCCCceeeeeEEEE---cCCceEEEecCCeEEE
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSV-----FP---------------SREGTFMKGLCMRY---FDPEAVVGCEDGTARV 217 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~-----~~---------------~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~v 217 (430)
.|++++ |+.+..|.|||+.-...+ +. ...+|...+..+.. +...|++|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 356888 999999999998632110 00 01122222223332 2334999999999999
Q ss_pred EECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce-eEEEecCCCCCeEEEEEecCCC-EEEEE
Q 014104 218 FDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR-VATLRSTDCTGIKTLCYNPCSR-LVFAG 293 (430)
Q Consensus 218 wd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~ 293 (430)
||+.++++..++..|.+.|.+++|+|. ..+++|+.|++|.+.|.+.... -..++ ..+.|..++|+|... .++++
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk--~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK--FDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE--eccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999975 7999999999999999994322 22233 456899999998664 66788
Q ss_pred eCCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcCCCce--EEEEEeccCcceeeecc
Q 014104 294 TTAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQNTGEV--LSRCVMDIGSASSSSNK 369 (430)
Q Consensus 294 ~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~s 369 (430)
..||+|+-+|+|+ ++++.+++.|.+.|.++. +++. -.++++++.|+.|++|++..... +..-...-
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~-~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~--------- 418 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDEISGLS-VNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKL--------- 418 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCCcceEE-ecCCCCcceeeccccceEEEEeecCCCCcccccccccc---------
Confidence 8999999999998 499999999999999999 5554 45789999999999999874332 21111100
Q ss_pred CCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeCCCeEEEEEecCCC
Q 014104 370 VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 370 ~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+...|++++ .-.++.||..+.++|||+.++.
T Consensus 419 ---------------------------~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 419 ---------------------------GRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ---------------------------cceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 124455553 4568999999999999998764
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-23 Score=169.13 Aligned_cols=189 Identities=15% Similarity=0.202 Sum_probs=161.2
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC------CC-----------
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL------SS----------- 263 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~------~~----------- 263 (430)
..|.+.+++.|.+.++|.+++++|+.++.+|.+.|++++|++. .++++++.|++..||.. ..
T Consensus 159 tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 159 TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 3445889999999999999999999999999999999999975 78999999999999951 00
Q ss_pred -----------------------CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCce
Q 014104 264 -----------------------DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV 320 (430)
Q Consensus 264 -----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 320 (430)
..++..+.+ |...|.+..|-..|+.+++++.|.+..+||+++++++..+.+|....
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~EL 317 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSEL 317 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhc
Confidence 012445555 77789999999999999999999999999999999999999999999
Q ss_pred EEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCee
Q 014104 321 YSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPIT 400 (430)
Q Consensus 321 ~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~ 400 (430)
+-.. -+|..+++++++.|.+.++||.+ +.++.... +.+|...|+
T Consensus 318 tHcs-tHptQrLVvTsSrDtTFRLWDFR--eaI~sV~V---------------------------------FQGHtdtVT 361 (481)
T KOG0300|consen 318 THCS-THPTQRLVVTSSRDTTFRLWDFR--EAIQSVAV---------------------------------FQGHTDTVT 361 (481)
T ss_pred cccc-cCCcceEEEEeccCceeEeccch--hhcceeee---------------------------------eccccccee
Confidence 8887 88999999999999999999997 33332221 246778999
Q ss_pred EEEEc-CeEEEEeeCCCeEEEEEecCCC
Q 014104 401 CLAVG-MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 401 ~v~~~-~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
++.|+ +..+++|++|.+|+|||+.+-.
T Consensus 362 S~vF~~dd~vVSgSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 362 SVVFNTDDRVVSGSDDRTVKVWDLRNMR 389 (481)
T ss_pred EEEEecCCceeecCCCceEEEeeecccc
Confidence 99995 7889999999999999998653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=158.89 Aligned_cols=239 Identities=15% Similarity=0.174 Sum_probs=182.2
Q ss_pred EeccccceeEEEe--cCCeEEEEeCCCeEEEEecCCC---eeEEeeecCC-ceeEEEEec--CCCEEE-EEeCCeEEEEE
Q 014104 108 WKAHSVGVDQCRM--KRGLILTGVGDKVMRLWSLEGY---KCVEEYSLPN-AASLVDFDF--DESKIV-GLIGTRICIWR 178 (430)
Q Consensus 108 l~~h~~~v~~~~~--~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~-~~~~~~~~~--~~~~l~-~~~~~~i~vwd 178 (430)
-.+|.+.|..+.. ...+|+|++.|++|+|+...+. +.+.++.+|. ++.-++|.. -|..|+ ++.||+|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999988766 4559999999999999998753 5678888874 455588876 788899 88999999999
Q ss_pred cCCCcc-cccCCCCcee--eeeEEEEc--CCceEEEecCCeEEEEECCCC---eeeEEeecCCCCeEEEEecCC------
Q 014104 179 RNGLRS-VFPSREGTFM--KGLCMRYF--DPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED------ 244 (430)
Q Consensus 179 ~~~~~~-~~~~~~~~~~--~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~~~------ 244 (430)
-++++- ....+..+.. ..+++.+. +..|++++.||.|.|.+.++. ...+....|.-.|+++.|.|.
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 998852 2222333333 33444443 233999999999999987654 223455678889999999863
Q ss_pred ---------CEEEEEeCCCeEEEEeCCCCce--eEEEecCCCCCeEEEEEecCC----CEEEEEeCCCeEEEEeCCCCce
Q 014104 245 ---------QLIISGSSLGSIAISGLSSDQR--VATLRSTDCTGIKTLCYNPCS----RLVFAGTTAGYASCWDLRTMKS 309 (430)
Q Consensus 245 ---------~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~ 309 (430)
..|++|+.|..|+||+..+++- .+++.+ |.+.|+.++|.|.- ..+++++.||++.||..+....
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~-H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e 245 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEG-HKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE 245 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhh-cchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC
Confidence 3599999999999999987642 344666 88999999999964 4899999999999998763211
Q ss_pred ---eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 310 ---LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 310 ---~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
...++.....++.+. ||+.|..|++++.|+.|.+|.-.
T Consensus 246 ~wk~tll~~f~~~~w~vS-WS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 246 PWKKTLLEEFPDVVWRVS-WSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cccccccccCCcceEEEE-EeccccEEEEecCCcEEEEEEeC
Confidence 112333457899998 99999999999999999999754
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=171.56 Aligned_cols=203 Identities=16% Similarity=0.237 Sum_probs=160.8
Q ss_pred EEEEeccccceeEEEec---CCeEEEEeCCCeEEEEecCCCeeE-------EeeecCCceeEEEEecCCCEEEEEeCCeE
Q 014104 105 IDQWKAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKCV-------EEYSLPNAASLVDFDFDESKIVGLIGTRI 174 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 174 (430)
-..|.||++.=+.+.|+ .++|++|+.|++|.+||+...... ..+.+|
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h----------------------- 226 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH----------------------- 226 (422)
T ss_pred ceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecC-----------------------
Confidence 34789999977888884 359999999999999998754321 112222
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECC--CCeeeEEeecCCCCeEEEEecC--CCEEEE
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMY--SRKCSQIIRMHCAPVTSLSLSE--DQLIIS 249 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~~~--~~~l~~ 249 (430)
.. .+..+++.+.+.. +++++.|+.+.|||++ +.++.+..++|.++|.|++|+| +..||+
T Consensus 227 ---------------~~-~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT 290 (422)
T KOG0264|consen 227 ---------------ED-VVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILAT 290 (422)
T ss_pred ---------------Cc-ceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEe
Confidence 11 1233444444444 8899999999999999 5667778889999999999997 378999
Q ss_pred EeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCC-C-------------ceeeee
Q 014104 250 GSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRT-M-------------KSLWET 313 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~-------------~~~~~~ 313 (430)
|+.|++|.+||+|+.+ ++.++.+ |...|..|.|+|.. ..|++++.|+.+.+||+.. + +++...
T Consensus 291 ~S~D~tV~LwDlRnL~~~lh~~e~-H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~H 369 (422)
T KOG0264|consen 291 GSADKTVALWDLRNLNKPLHTFEG-HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIH 369 (422)
T ss_pred ccCCCcEEEeechhcccCceeccC-CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEe
Confidence 9999999999999754 5777877 89999999999975 5788999999999999864 1 345667
Q ss_pred ecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcC
Q 014104 314 RISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~ 348 (430)
.||...|..+. |+|+.. .|++.+.|+.+.||...
T Consensus 370 gGH~~kV~Dfs-Wnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 370 GGHTAKVSDFS-WNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCccccccccc-CCCCCCeEEEEecCCceEEEeecc
Confidence 78999999998 888876 56788899999999976
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-21 Score=172.76 Aligned_cols=323 Identities=11% Similarity=0.071 Sum_probs=229.2
Q ss_pred EeEEEEeccccceeEEEec----CC-eEEEEeCCCeEEEEecCCCe---------------------eEEeee-------
Q 014104 103 IDIDQWKAHSVGVDQCRMK----RG-LILTGVGDKVMRLWSLEGYK---------------------CVEEYS------- 149 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~----~~-~l~s~~~dg~i~iwd~~~~~---------------------~~~~~~------- 149 (430)
..+..+.||.+.|.+++|. +. +|+|+|.|..||||.+.-+. ....+.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 3677899999999999992 23 99999999999999764221 111111
Q ss_pred ---cC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccc------cCCCCc--eeeeeEEEEcCCceEEEecCCeEE
Q 014104 150 ---LP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF------PSREGT--FMKGLCMRYFDPEAVVGCEDGTAR 216 (430)
Q Consensus 150 ---~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~------~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~ 216 (430)
+| +-+..+.|+|.+..|+ ++.|.++.+|..+...-++ ....+. .....-|.+++..+++-+..|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 33 4577789999996666 9999999999988763221 111111 123344555666689999999999
Q ss_pred EEECCCC---eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc-eeEEEe--cCCCCCeEEEEEecCCCE
Q 014104 217 VFDMYSR---KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVATLR--STDCTGIKTLCYNPCSRL 289 (430)
Q Consensus 217 vwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~--~~~~~~v~~~~~~~~~~~ 289 (430)
+|..... .....+.+|.+.|.+++|+|. +++++.+.|.+-++|-.-..+ .-+.+. .-|...++|++|-+..-.
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~ 421 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQ 421 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCce
Confidence 9983322 234556799999999999974 899999999999998754111 112221 126678999999876667
Q ss_pred EEEEeCCCeEEEEeCCCC--------------------------------c-----------------------------
Q 014104 290 VFAGTTAGYASCWDLRTM--------------------------------K----------------------------- 308 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~--------------------------------~----------------------------- 308 (430)
+++|.....+++|+.... +
T Consensus 422 FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ 501 (764)
T KOG1063|consen 422 FVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELT 501 (764)
T ss_pred eeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhcc
Confidence 788888888899976311 0
Q ss_pred ---------------eeeeeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCceEEEEEeccCcceeeec
Q 014104 309 ---------------SLWETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGEVLSRCVMDIGSASSSSN 368 (430)
Q Consensus 309 ---------------~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 368 (430)
.+..+.+|...|++++ .+|+++++|+++.. ..|++|+..+-..++.+.+|.-.++-+.+
T Consensus 502 ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~-~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~F 580 (764)
T KOG1063|consen 502 EPPTEDQLQQNTLWPEVHKLYGHGYEVYALA-ISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAF 580 (764)
T ss_pred CCChHHHHHHhccchhhHHhccCceeEEEEE-ecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEE
Confidence 1123446777899999 99999999999854 35899999988888888888777777777
Q ss_pred cCCceEE----------EeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 369 KVSGVIE----------RNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 369 s~d~~v~----------~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
|+||+.. +++...-.....-....+.|+..|++.+| ++.+++|+|.|.+|+||....+
T Consensus 581 Spdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 581 SPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 7777543 33221111111111125789999999999 5788999999999999998765
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=190.78 Aligned_cols=184 Identities=21% Similarity=0.358 Sum_probs=165.8
Q ss_pred CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEE
Q 014104 204 PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLC 282 (430)
Q Consensus 204 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 282 (430)
..+++|+.|..+-+|.+.....+-.+.+|..+|.++.|++. .++++|+.+|+|++||++.++.++++.+ |...+..+.
T Consensus 41 r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h~~~~~sv~ 119 (825)
T KOG0267|consen 41 RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-HLLNITSVD 119 (825)
T ss_pred eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc-cccCcceee
Confidence 33889999999999998877788889999999999999965 7889999999999999999999999998 888999999
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCc
Q 014104 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGS 362 (430)
Q Consensus 283 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 362 (430)
|+|.+.+.+.|+.|+.+++||.+...+...+.+|...|..+. |+|+|+++++|+.|..++|||...|+....|..|..
T Consensus 120 f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~-lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~- 197 (825)
T KOG0267|consen 120 FHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR-LSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG- 197 (825)
T ss_pred eccceEEeccccccccceehhhhccCceeeecCCcceeEEEe-ecCCCceeeccCCcceeeeecccccccccccccccc-
Confidence 999999999999999999999998889999999999999998 999999999999999999999999999998876544
Q ss_pred ceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecC
Q 014104 363 ASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 363 ~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+.++.|+ .-.+++||.|++|++||+++
T Consensus 198 -----------------------------------~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 198 -----------------------------------KVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred -----------------------------------cccccccCchhhhhccCCCCceeeeeccce
Confidence 66666675 34478999999999999873
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-21 Score=158.69 Aligned_cols=201 Identities=16% Similarity=0.227 Sum_probs=167.7
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC---CEEEEEeCCCeEEEEeCCC
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~ 263 (430)
.....|...+.++...++++++|+.|-+|+|||++....+..+-.|.+.|+++.|.+. +.|++|+.||.|.+|+...
T Consensus 37 F~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~ 116 (362)
T KOG0294|consen 37 FAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS 116 (362)
T ss_pred ccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC
Confidence 3345566667889999999999999999999999999999999999999999999964 3899999999999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEE
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLR 343 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~ 343 (430)
-.++..++. |.+.|+.++.+|.|++-++.+.|+.+++||+-.|+.-..+.... .-..+. |+|.|.+++.++.+ .|-
T Consensus 117 W~~~~slK~-H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~-w~~~Gd~F~v~~~~-~i~ 192 (362)
T KOG0294|consen 117 WELLKSLKA-HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN-KATLVS-WSPQGDHFVVSGRN-KID 192 (362)
T ss_pred eEEeeeecc-cccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC-cceeeE-EcCCCCEEEEEecc-EEE
Confidence 999999998 88889999999999999999999999999998887655444322 122366 89999988888765 599
Q ss_pred EEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEE
Q 014104 344 VLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 344 vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~ 422 (430)
+|.+.+......+... ..+.|+.| ++..|++|++|+.|++||
T Consensus 193 i~q~d~A~v~~~i~~~-------------------------------------~r~l~~~~l~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 193 IYQLDNASVFREIENP-------------------------------------KRILCATFLDGSELLVGGDNEWISLKD 235 (362)
T ss_pred EEecccHhHhhhhhcc-------------------------------------ccceeeeecCCceEEEecCCceEEEec
Confidence 9998876665555421 25677777 689999999999999999
Q ss_pred ecCCCc
Q 014104 423 FNYSDK 428 (430)
Q Consensus 423 ~~~~~~ 428 (430)
.+....
T Consensus 236 ~ds~~~ 241 (362)
T KOG0294|consen 236 TDSDTP 241 (362)
T ss_pred cCCCcc
Confidence 886543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-21 Score=161.32 Aligned_cols=256 Identities=14% Similarity=0.163 Sum_probs=179.7
Q ss_pred EEeCCeEEEEEcCCCcc--cccCCCCceeeeeEEEE-cCCc-eEEEecCCeEEEEECCCCeeeE--EeecCC-CCeEEEE
Q 014104 168 GLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRY-FDPE-AVVGCEDGTARVFDMYSRKCSQ--IIRMHC-APVTSLS 240 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~-~~~~-l~~~~~dg~i~vwd~~~~~~~~--~~~~~~-~~i~~~~ 240 (430)
+.+.|.|++||..+++. .+..++.... .+.+.. +++. +.+++.||+|++||+++..... ....+. .+..+++
T Consensus 46 ~lSngsv~lyd~~tg~~l~~fk~~~~~~N-~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 46 SLSNGSVRLYDKGTGQLLEEFKGPPATTN-GVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLD 124 (376)
T ss_pred EecCCeEEEEeccchhhhheecCCCCccc-ceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEee
Confidence 77788888888887653 3444444432 334433 2444 9999999999999999875443 334444 4677888
Q ss_pred ec-CCCEEEEEe----CCCeEEEEeCCCCce-eEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCc---ee
Q 014104 241 LS-EDQLIISGS----SLGSIAISGLSSDQR-VATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMK---SL 310 (430)
Q Consensus 241 ~~-~~~~l~~~~----~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~---~~ 310 (430)
.+ .++++++|+ .+-.|.+||++..+. ++.+...|...|+++.|+|+. ++|++|+.||.|.+||+.... .+
T Consensus 125 ~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL 204 (376)
T KOG1188|consen 125 LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL 204 (376)
T ss_pred ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH
Confidence 77 457777775 467899999998776 788877799999999999965 688999999999999998642 22
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc-----------------------Ccceeee
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI-----------------------GSASSSS 367 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----------------------~~~~~~~ 367 (430)
...-.|...|-.+.|.++.-+.|.+-+..++..+|+++.+.+...+.... .....++
T Consensus 205 ~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~ 284 (376)
T KOG1188|consen 205 LHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALA 284 (376)
T ss_pred HHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEe
Confidence 23334667799999555555679999999999999999876544443211 1113334
Q ss_pred ccCCceEEEeec---ccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 368 NKVSGVIERNEG---RRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 368 ~s~d~~v~~~~~---~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
|..-+...+... ........+..+..+|...|.++.|+ +..+.|||+||.|.+|..+
T Consensus 285 g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 285 GTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 433333322222 22333345566667788899999995 7889999999999999954
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=161.82 Aligned_cols=215 Identities=19% Similarity=0.239 Sum_probs=153.1
Q ss_pred eccccceeEEEe---cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc
Q 014104 109 KAHSVGVDQCRM---KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS 184 (430)
Q Consensus 109 ~~h~~~v~~~~~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 184 (430)
.+|.+.++-+.. .+. +.++=+..|.|.|||+.. .+..+..+... +..+... .-.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~--~l~~l~~~~~~--~~~s~~~------------------Pl~ 205 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAP--HLNALSEPGLE--VKDSEFR------------------PLF 205 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchh--hhhhhcCcccc--ccccccC------------------ceE
Confidence 357777776655 344 777778899999999753 12222111000 0000000 000
Q ss_pred cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCee---eEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEE
Q 014104 185 VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAI 258 (430)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~v 258 (430)
.+..+.+. ...++|++.... +++|..-+.|++|...+|.- ...+.+|+..|-.++|+|. ..|++||-||+|+|
T Consensus 206 t~~ghk~E-Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrI 284 (440)
T KOG0302|consen 206 TFNGHKGE-GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRI 284 (440)
T ss_pred EecccCcc-ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEE
Confidence 11222211 223455543332 78887788899999887642 2356679999999999985 79999999999999
Q ss_pred EeCCCC---ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC---CceeeeeecCCCceEEEEEeeCC-CC
Q 014104 259 SGLSSD---QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT---MKSLWETRISPNVVYSLQHLQND-TS 331 (430)
Q Consensus 259 wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~v~~l~~~s~~-~~ 331 (430)
||++.+ .++.+ + .|.+.|..+.|+..-.+|++|+.||+++|||+++ ++++..++-|..+|+++. |+|. ..
T Consensus 285 WDiRs~~~~~~~~~-k-Ah~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsie-W~p~e~s 361 (440)
T KOG0302|consen 285 WDIRSGPKKAAVST-K-AHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIE-WHPHEDS 361 (440)
T ss_pred EEecCCCccceeEe-e-ccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEE-eccccCc
Confidence 999987 33333 3 4888999999998888999999999999999986 678899999999999999 7775 45
Q ss_pred eEEEEcCCCeEEEEEcCC
Q 014104 332 TLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~ 349 (430)
.+++++.|..|.+||+..
T Consensus 362 ~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEeccCCCcEEEEEeec
Confidence 788888999999999873
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-22 Score=181.93 Aligned_cols=226 Identities=15% Similarity=0.237 Sum_probs=177.4
Q ss_pred CCeEEEEeCCCeEEEEecCC---CeeEEeeecC-CceeEEEEecCC-CEEE-EEeCCeEEEEEcCCCcc--cccCCCCce
Q 014104 122 RGLILTGVGDKVMRLWSLEG---YKCVEEYSLP-NAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLRS--VFPSREGTF 193 (430)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~-~~~~~~~~~~~~-~~l~-~~~~~~i~vwd~~~~~~--~~~~~~~~~ 193 (430)
+++|||++..|.|.+||+.. .+.+..|..| ..+..+.|++.. .+|+ |+.||.|++||+..... ++.. ....
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~-nSES 178 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRS-NSES 178 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccc-cchh
Confidence 45999999999999999987 4555566655 456779998854 5555 89999999999987653 3333 3344
Q ss_pred eeeeEEEEcCCc-eEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce--eE
Q 014104 194 MKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR--VA 268 (430)
Q Consensus 194 ~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~--~~ 268 (430)
+..+.|++..++ ++++...|.+++||++.. ++...+..|.++|.|+.|+|+ .+||+|+.|++|+|||..+++. +.
T Consensus 179 iRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 179 IRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred hhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcccee
Confidence 455666665555 899999999999999865 567888999999999999998 7999999999999999986554 44
Q ss_pred EEecCCCCCeEEEEEecCCCE-EEEEe--CCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 269 TLRSTDCTGIKTLCYNPCSRL-VFAGT--TAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
++. ...+|.+|.|-|...+ |++++ .|-.|+|||++- .-+...+..|...++.++|-+.|...+.+++.||+|..
T Consensus 259 tIn--Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TIN--TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEe--ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence 444 5568999999998764 55443 477899999975 45667889999999999854556678999999999877
Q ss_pred EEcCCC
Q 014104 345 LDQNTG 350 (430)
Q Consensus 345 wd~~~~ 350 (430)
-.++++
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 666544
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=156.70 Aligned_cols=242 Identities=13% Similarity=0.162 Sum_probs=181.0
Q ss_pred eEEEEeccccceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCc--eeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 104 DIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA--ASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
+...|++|.+.|+++.|. +++|.+|..-|.|++|++.+.+....+...+. +..+..-|++....-+.|..+.+|++.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIA 85 (323)
T ss_pred CeeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEcc
Confidence 466788999999999994 56999999999999999999887777774433 333555566444446778888888865
Q ss_pred CCcc------------------------c---ccC-------------------------CCCceeeeeEEEEc---CCc
Q 014104 181 GLRS------------------------V---FPS-------------------------REGTFMKGLCMRYF---DPE 205 (430)
Q Consensus 181 ~~~~------------------------~---~~~-------------------------~~~~~~~~~~~~~~---~~~ 205 (430)
.... . ..- ..+....++|.... +..
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 4110 0 000 00011223344321 111
Q ss_pred --eEEEecCCeEEEEECCCCee----------eEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCC--ce--eE
Q 014104 206 --AVVGCEDGTARVFDMYSRKC----------SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD--QR--VA 268 (430)
Q Consensus 206 --l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~--~~--~~ 268 (430)
+++|.++|.|.+||+.++.. +.....|..+|.++.+.+- +.=++|+.+..+..|.+... .+ ..
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 78899999999999998733 3344578899999999853 45567888888999988643 22 11
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
.+.. ....|..+..-||++.+|+++.|+.|++|+.++++++..++-|.+.|++++ |+|+...+++++.|+.|.+|++
T Consensus 246 e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vA-fspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVA-FSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEE-eCCCCchhhhccCCceEEeeec
Confidence 2222 334788999999999999999999999999999999999999999999999 9999999999999999999986
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=155.28 Aligned_cols=219 Identities=15% Similarity=0.160 Sum_probs=167.6
Q ss_pred CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEec--CCCCCe
Q 014104 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRS--TDCTGI 278 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v 278 (430)
+|.+++|+.-|.|+|.|+.++++...+.+|...|+.+.+.|. ++++++|.|.+|++||+++..++..|-+ +|...|
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 445888999999999999999999999999999999999986 6999999999999999999999988754 378899
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCceee----------------------------eeecCCCceEEEEEeeCCC
Q 014104 279 KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW----------------------------ETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------------------------~~~~~~~~v~~l~~~s~~~ 330 (430)
.++.|+++|.++++++.|.++++|++...+... +-..|...|-|+.|| |
T Consensus 185 LSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~---g 261 (385)
T KOG1034|consen 185 LSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF---G 261 (385)
T ss_pred EEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH---h
Confidence 999999999999999999999999997321100 112355566666644 6
Q ss_pred CeEEEEcCCCeEEEEEc-CCCc-------------eEEEEEeccC------------cceeeeccCCceEEEeecccccC
Q 014104 331 STLVVGGIDGVLRVLDQ-NTGE-------------VLSRCVMDIG------------SASSSSNKVSGVIERNEGRRLSA 384 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~-~~~~-------------~~~~~~~~~~------------~~~~~~~s~d~~v~~~~~~~~~~ 384 (430)
.++++-|-++.|..|.. +-++ .+.++..... ...++.|.+.|.+.+|+....++
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 88999999999999987 2111 1222222221 22578888999999988777665
Q ss_pred CcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 385 GCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 385 ~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
..+.......-...|...+| |+..|+...+|++|--||.-
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 42222222222356777777 79999999999999888853
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=160.15 Aligned_cols=250 Identities=16% Similarity=0.189 Sum_probs=185.2
Q ss_pred EEEEeccccceeEEEe-c--C-CeEEEEeCCCeEEEEecCCCe----eEEeeecC-CceeEEEEecCC-CEEE-EEeCCe
Q 014104 105 IDQWKAHSVGVDQCRM-K--R-GLILTGVGDKVMRLWSLEGYK----CVEEYSLP-NAASLVDFDFDE-SKIV-GLIGTR 173 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~--~-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-~~~~~~~~~~~~-~~l~-~~~~~~ 173 (430)
....+-|.+.|++++| | + ..+++|+.-|+|-+||+.+.+ -+..+..| ..+..+.|+|.+ ..++ ++.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 4466789999999999 3 2 289999999999999995322 23333333 457779999954 3444 899999
Q ss_pred EEEEEcCCCcc--cccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee-eEEeecCCCCeEEEEecCC--CEE
Q 014104 174 ICIWRRNGLRS--VFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED--QLI 247 (430)
Q Consensus 174 i~vwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~~~~--~~l 247 (430)
|+.-|+++... ++... .......+.+....+.++.+..=|...+||++++.. ...+..|...|.+|+++|- .++
T Consensus 259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 99999998752 22222 112222233344455588888878999999998754 6667778889999999974 799
Q ss_pred EEEeCCCeEEEEeCCCCce-----eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC----CCceeeeeecCC-
Q 014104 248 ISGSSLGSIAISGLSSDQR-----VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR----TMKSLWETRISP- 317 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~----~~~~~~~~~~~~- 317 (430)
++++.|++++|||++.-.. +.++. |...|.+..|+|.+-.|++.+.|..|+|||.. ...+...+. |.
T Consensus 339 aT~s~D~T~kIWD~R~l~~K~sp~lst~~--HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~ 415 (498)
T KOG4328|consen 339 ATASLDQTAKIWDLRQLRGKASPFLSTLP--HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNN 415 (498)
T ss_pred eecccCcceeeeehhhhcCCCCcceeccc--ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccC
Confidence 9999999999999986332 34444 88899999999999889999999999999984 333333333 22
Q ss_pred -----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 318 -----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 318 -----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
-...... |.|+..++++|-.-..|-|+|-..++.+..+..
T Consensus 416 ~t~RwlT~fKA~-W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~ 460 (498)
T KOG4328|consen 416 RTGRWLTPFKAA-WDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHD 460 (498)
T ss_pred cccccccchhhe-eCCCccEEEEeccCcceeEEcCCCCEEeeeccC
Confidence 1233444 899999999999999999999988887776543
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.7e-20 Score=165.32 Aligned_cols=317 Identities=11% Similarity=0.078 Sum_probs=217.4
Q ss_pred eEEEEeccccceeEEEe-cCC----eEEEEeCCCeEEEEecCCCee--EEeeecCCceeEEEEecCCCEEE-EEeCCeEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG----LILTGVGDKVMRLWSLEGYKC--VEEYSLPNAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~----~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
.+.++.||.++|+|+.+ +.. ++++|+.|+.|++|.++.... +..+.+ ....++++......+. .+.|+.+.
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g-~~~~~~cv~a~~~~~~~~~ad~~v~ 124 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQG-HCKECVCVVARSSVMTCKAADGTVS 124 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecC-cceeEEEEEeeeeEEEeeccCceEE
Confidence 46688999999999998 332 799999999999999984333 344444 4666677766555554 47899999
Q ss_pred EEEcCCCccc----ccC-CCCceeeeeEEEEcCCc--eEEEecCCeEEEEECCCC--eeeEEeecCCCCeEEEEec-CC-
Q 014104 176 IWRRNGLRSV----FPS-REGTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSR--KCSQIIRMHCAPVTSLSLS-ED- 244 (430)
Q Consensus 176 vwd~~~~~~~----~~~-~~~~~~~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~i~~~~~~-~~- 244 (430)
+||.+..+.. +.. ....+...++..++.+. ++.|+.+..|.++.-.+. +.+..+.+|.+.|.+++|. ++
T Consensus 125 vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~ 204 (764)
T KOG1063|consen 125 VWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG 204 (764)
T ss_pred EeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC
Confidence 9999655511 111 11111112222222222 777888888888865533 4677889999999999998 33
Q ss_pred --CEEEEEeCCCeEEEEeCCCCc---------------------eeEE---------EecCCCCCeEEEEEecCCCEEEE
Q 014104 245 --QLIISGSSLGSIAISGLSSDQ---------------------RVAT---------LRSTDCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 245 --~~l~~~~~dg~i~vwd~~~~~---------------------~~~~---------~~~~~~~~v~~~~~~~~~~~l~~ 292 (430)
-+++++|.|..|++|.+.-+. .... +..+|+..|+++.|+|.+..|.+
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 488999999999999875322 1111 12248899999999999989999
Q ss_pred EeCCCeEEEEeCCCCcee-------eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC---ceEEEEEeccCc
Q 014104 293 GTTAGYASCWDLRTMKSL-------WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG---EVLSRCVMDIGS 362 (430)
Q Consensus 293 ~~~dg~i~i~d~~~~~~~-------~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~---~~~~~~~~~~~~ 362 (430)
++.|.++.+|...+..-+ .+..+..+..++.. |+|++..+++-+..|-.++|..... .....+.+|.+.
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~l-w~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~ 363 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGL-WSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG 363 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEE-EcCCCCEEEEecccCcEEEEeccCccceeecccccccccc
Confidence 999999999987654222 22333345577777 9999999999999999999984321 223334455555
Q ss_pred c----------eeeeccCCceEEEeecccccCCccccc--CCCCCCCCeeEEEE-c-CeEEEEeeCCCeEEEEEec
Q 014104 363 A----------SSSSNKVSGVIERNEGRRLSAGCCIDR--IPKTIRPPITCLAV-G-MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 363 ~----------~~~~~s~d~~v~~~~~~~~~~~~~~~~--~~~~h~~~v~~v~~-~-~~~l~t~~~Dg~v~vw~~~ 424 (430)
+ ++++.+.|-+.+++-.+. ....... -|+-|...++|+++ + ...+++|.++..+|+|+..
T Consensus 364 V~dv~W~psGeflLsvs~DQTTRlFa~wg--~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 364 VKDVDWDPSGEFLLSVSLDQTTRLFARWG--RQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred ceeeeecCCCCEEEEeccccceeeecccc--cccceeeecccccccccceeeehccCCceeeecccceeeeeecCc
Confidence 5 455555555554443331 1111222 24678899999999 5 5678999999999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-19 Score=149.40 Aligned_cols=245 Identities=13% Similarity=0.170 Sum_probs=173.2
Q ss_pred eeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCC
Q 014104 115 VDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE 190 (430)
Q Consensus 115 v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~ 190 (430)
-.|+.|+ .| +||+|..||.|.|||+.+...-+.+..| .++.+++|++||+.|+ ++.|..+.+||+..+..+....-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 6788995 45 9999999999999999998877777776 6788899999999999 89999999999998876544444
Q ss_pred CceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeec-CCC----CeEEEEecC-CCEEEEEeCCCeEEEEeCCC
Q 014104 191 GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRM-HCA----PVTSLSLSE-DQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~----~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~ 263 (430)
...+....+.+-... .++.-.+..-.+.++..++. ..+.. ..+ .-.+..|.+ ++++++|...|.+.++|..+
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 443333444443333 33333333344444433211 11110 011 112234554 58999999999999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-------Cce--eeeeec--CCCceEEEEEeeCCCCe
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-------MKS--LWETRI--SPNVVYSLQHLQNDTST 332 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-------~~~--~~~~~~--~~~~v~~l~~~s~~~~~ 332 (430)
.+++..++......|..+.|+..|++|+..+.|+.|+.|+++. +++ .+.++. ....=.+++ |+.+|.|
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc-fs~dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC-FSGDGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee-ecCCccE
Confidence 9999888863336899999999999999999999999999873 111 111110 111223444 8899999
Q ss_pred EEEEcC-CCeEEEEEcCCCceEEEEEeccC
Q 014104 333 LVVGGI-DGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 333 l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+++++. ...++||....|.+++.+.+..+
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCch
Confidence 988873 46799999999999999987554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.1e-20 Score=161.26 Aligned_cols=255 Identities=14% Similarity=0.174 Sum_probs=193.4
Q ss_pred ceeEEEecC-CeEEEE--eCCCeEEEEecCCC--ee--EEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc
Q 014104 114 GVDQCRMKR-GLILTG--VGDKVMRLWSLEGY--KC--VEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV 185 (430)
Q Consensus 114 ~v~~~~~~~-~~l~s~--~~dg~i~iwd~~~~--~~--~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~ 185 (430)
.+.++.|.. +.|+++ +.|..|++|.-... +. +....+ +...+++......+++ ++..+.|+|||+. .+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g-d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG-DNAFCVACASQSLYEISGGQSGCVKIWDLR-AKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc-chHHHHhhhhcceeeeccCcCceeeehhhH-HHHH
Confidence 478888853 345544 55788999974432 11 122222 2344444444556777 8889999999999 4445
Q ss_pred ccCCCCceeeeeEEEEcCCc--eEEEecCCeEEEEECCCCeeeEEeecC-CCCeEEEEecCC--CEEEEEeCCCeEEEEe
Q 014104 186 FPSREGTFMKGLCMRYFDPE--AVVGCEDGTARVFDMYSRKCSQIIRMH-CAPVTSLSLSED--QLIISGSSLGSIAISG 260 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~--l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~~~~--~~l~~~~~dg~i~vwd 260 (430)
.....+|...+.++.++..+ |++++..|.|.+..+.++.....+... ...|.-+.|++. .+|.+++.+|.|.+||
T Consensus 114 hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwD 193 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWD 193 (673)
T ss_pred hhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEe
Confidence 55555666677787776554 999999999999999998877777644 345668999975 5788899999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
.....++..+...|..+...++|+|.. .+|++.+.|..|.+||.+..+....+.. ..+...++ |+++|.+|+.|+..
T Consensus 194 v~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y-~~Plstva-f~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 194 VQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY-SHPLSTVA-FSECGTYLCAGNSK 271 (673)
T ss_pred ccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeee-cCCcceee-ecCCceEEEeecCC
Confidence 998888888877799999999999965 4677889999999999998776666553 36788888 99999999999999
Q ss_pred CeEEEEEcCC-CceEEEEEeccCcceeeeccCCc
Q 014104 340 GVLRVLDQNT-GEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 340 g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
|.|..||++. ..++..+..|...+..+++-+..
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 9999999985 45788888877766555555444
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=156.80 Aligned_cols=182 Identities=18% Similarity=0.278 Sum_probs=150.2
Q ss_pred eEEEecCCeEEEEECCC----------------CeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCcee
Q 014104 206 AVVGCEDGTARVFDMYS----------------RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRV 267 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~----------------~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~ 267 (430)
.++-+..|.|+|||+.. .+++.++.+|.+.=..++|+|- ..+++|.--+.|++|...++.-.
T Consensus 168 ~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~ 247 (440)
T KOG0302|consen 168 CASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK 247 (440)
T ss_pred eeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCcee
Confidence 56667889999999852 2466788899998899999983 56888888889999999887643
Q ss_pred ---EEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCCC---ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 268 ---ATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRTM---KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 268 ---~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
..|.+ |...|..++|+|..+ .|++++.||+|+|||+|.+ .++. .+.|.+.|+-+. |+.+..+|++|+.||
T Consensus 248 vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVIS-Wnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 248 VDQRPFTG-HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVIS-WNRREPLLASGGDDG 324 (440)
T ss_pred ecCccccc-cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEE-ccCCcceeeecCCCc
Confidence 34555 888999999999764 7789999999999999987 3343 388999999998 888888999999999
Q ss_pred eEEEEEcCC---CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeC
Q 014104 341 VLRVLDQNT---GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHN 414 (430)
Q Consensus 341 ~i~vwd~~~---~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~ 414 (430)
+++|||+++ ++++..++. |..+|++|.|+ ...|+++|.
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~------------------------------------Hk~pItsieW~p~e~s~iaasg~ 368 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKY------------------------------------HKAPITSIEWHPHEDSVIAASGE 368 (440)
T ss_pred eEEEEEhhhccCCCcceeEEe------------------------------------ccCCeeEEEeccccCceEEeccC
Confidence 999999985 456666665 55699999995 677999999
Q ss_pred CCeEEEEEecCC
Q 014104 415 SKYIRLWKFNYS 426 (430)
Q Consensus 415 Dg~v~vw~~~~~ 426 (430)
|..|.+||+...
T Consensus 369 D~QitiWDlsvE 380 (440)
T KOG0302|consen 369 DNQITIWDLSVE 380 (440)
T ss_pred CCcEEEEEeecc
Confidence 999999998753
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-19 Score=171.03 Aligned_cols=326 Identities=15% Similarity=0.130 Sum_probs=215.9
Q ss_pred hhhcccCCEeEEEEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCC-------CeeEEeee-cCCceeEEEEecCC
Q 014104 95 RFALEEGRIDIDQWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEG-------YKCVEEYS-LPNAASLVDFDFDE 163 (430)
Q Consensus 95 ~~~~~~~~~~~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~-------~~~~~~~~-~~~~~~~~~~~~~~ 163 (430)
...|...+..+..|..|...|..++.+ ++ +++|||.||+|++||... .+...++. ....+..+.+.+.+
T Consensus 1031 ~~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~ 1110 (1431)
T KOG1240|consen 1031 PPGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG 1110 (1431)
T ss_pred CCCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC
Confidence 455888889999999999999988883 33 999999999999999753 12334444 34567778888999
Q ss_pred CEEE-EEeCCeEEEEEcCCCc--cc-----ccCCCCceeeeeEEEEc-----CCceEEEecCCeEEEEECCCCeeeEEee
Q 014104 164 SKIV-GLIGTRICIWRRNGLR--SV-----FPSREGTFMKGLCMRYF-----DPEAVVGCEDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 164 ~~l~-~~~~~~i~vwd~~~~~--~~-----~~~~~~~~~~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 230 (430)
+.++ ++.||.|.+.+++... .. ..........++.+..+ +..++.+...+.|..||++.......++
T Consensus 1111 ~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk 1190 (1431)
T KOG1240|consen 1111 DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK 1190 (1431)
T ss_pred CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh
Confidence 9998 9999999999988621 11 11111111112333221 2247888888999999998776555544
Q ss_pred --cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC---EEEE-Ee-CCCeEEEE
Q 014104 231 --MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR---LVFA-GT-TAGYASCW 302 (430)
Q Consensus 231 --~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~-~~-~dg~i~i~ 302 (430)
...+.|++++.+|. ++++.|+..|.+.+||++-+.++.....++..+++.+..+|-.+ ..++ +. ..+.|.+|
T Consensus 1191 ~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~w 1270 (1431)
T KOG1240|consen 1191 NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTW 1270 (1431)
T ss_pred cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeee
Confidence 34578999999986 89999999999999999999998888766667888888887443 4444 44 56789999
Q ss_pred eCCCCceeeeeecC-----------------C---CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE-EEEEeccC
Q 014104 303 DLRTMKSLWETRIS-----------------P---NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL-SRCVMDIG 361 (430)
Q Consensus 303 d~~~~~~~~~~~~~-----------------~---~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~ 361 (430)
++.+|.....+... . ..+.+ . +...+..+.+|+.|..|+.||....+.. ....+...
T Consensus 1271 n~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~-~-~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~ 1348 (1431)
T KOG1240|consen 1271 NMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISC-G-VCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPST 1348 (1431)
T ss_pred ecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceee-e-cccCCceeeecCCccceeeccCCCcccccccccCccc
Confidence 99987554443322 0 11111 1 3334568899999999999998865544 22222111
Q ss_pred cc---------eeeeccCCceEEEe---ecccc---cCCcccc----cCCCCCCCCeeEEEE---cCeEEEEeeCCCeEE
Q 014104 362 SA---------SSSSNKVSGVIERN---EGRRL---SAGCCID----RIPKTIRPPITCLAV---GMKKVVTTHNSKYIR 419 (430)
Q Consensus 362 ~~---------~~~~~s~d~~v~~~---~~~~~---~~~~~~~----~~~~~h~~~v~~v~~---~~~~l~t~~~Dg~v~ 419 (430)
.. ..+.+++--...+. +.... .....++ .....|..+|+++++ +..+|++++.||.|+
T Consensus 1349 ~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~Ik 1428 (1431)
T KOG1240|consen 1349 SYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIK 1428 (1431)
T ss_pred cccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeee
Confidence 11 11111110000000 00000 0011111 123468899999998 456899999999999
Q ss_pred EEE
Q 014104 420 LWK 422 (430)
Q Consensus 420 vw~ 422 (430)
||.
T Consensus 1429 iWk 1431 (1431)
T KOG1240|consen 1429 IWK 1431 (1431)
T ss_pred ecC
Confidence 995
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-20 Score=159.75 Aligned_cols=185 Identities=17% Similarity=0.244 Sum_probs=148.0
Q ss_pred CCceEEEecCCeEEEEECCCCe---eeE------------------EeecCCCCeEEEEecCC--CEEEEEeCCCeEEEE
Q 014104 203 DPEAVVGCEDGTARVFDMYSRK---CSQ------------------IIRMHCAPVTSLSLSED--QLIISGSSLGSIAIS 259 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~---~~~------------------~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vw 259 (430)
+++++.|+.|..|.|||+.-.. +.. ...+|+..|.++.|+.. +.|++||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 3459999999999999985211 111 12368888999999854 799999999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee-eeeecCCCceEEEEEeeCCCC-eEEEE
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSL-WETRISPNVVYSLQHLQNDTS-TLVVG 336 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~v~~l~~~s~~~~-~l~s~ 336 (430)
|+.++++..++.. |...|.++.|+|.. .+|++|+.|++|.+.|.|..... ..++ -.+.|-.++ |.|... .++++
T Consensus 272 D~~~g~p~~s~~~-~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~-w~~~se~~f~~~ 348 (463)
T KOG0270|consen 272 DVDTGKPKSSITH-HGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVA-WDPHSENSFFVS 348 (463)
T ss_pred EcCCCCcceehhh-cCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEE-ecCCCceeEEEe
Confidence 9999999999985 88899999999864 68889999999999999952222 2222 236788888 766554 66778
Q ss_pred cCCCeEEEEEcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEe
Q 014104 337 GIDGVLRVLDQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTT 412 (430)
Q Consensus 337 ~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~ 412 (430)
..||+|+-+|+++. +++.++..|.+ +|.+++++ ..+++|+
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~------------------------------------~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDD------------------------------------EISGLSVNIQTPGLLSTA 392 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccC------------------------------------CcceEEecCCCCcceeec
Confidence 89999999999864 88998887555 89999985 6789999
Q ss_pred eCCCeEEEEEecCC
Q 014104 413 HNSKYIRLWKFNYS 426 (430)
Q Consensus 413 ~~Dg~v~vw~~~~~ 426 (430)
|.|+.|++|++...
T Consensus 393 s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 393 STDKVVKLWKFDVD 406 (463)
T ss_pred cccceEEEEeecCC
Confidence 99999999998743
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=155.49 Aligned_cols=235 Identities=15% Similarity=0.165 Sum_probs=185.7
Q ss_pred cccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEe--eecCC--ceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 111 HSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEE--YSLPN--AASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 111 h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~--~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
-.-+|.+..| ++| .+++++.-..+..||+.+.+..+. ..+.. ......+++++++|+ .+..|.|.+....++
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 3457777778 566 799999999999999998765432 22322 345578899999999 899999999999999
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe--EEEEecCC-CEEEEEeCCCeEEEE
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV--TSLSLSED-QLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i--~~~~~~~~-~~l~~~~~dg~i~vw 259 (430)
+.+........+..++|..++..|++.+.+|.|.+||+++..+++.+.. .+.| ++++.+++ .++|+|+..|.|-||
T Consensus 336 eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIY 414 (514)
T KOG2055|consen 336 ELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIY 414 (514)
T ss_pred hhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEe
Confidence 8766655566677788888888899999999999999999999988874 3444 45566644 899999999999999
Q ss_pred eCCC------CceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeeeeecC---CCceEEEEEeeC
Q 014104 260 GLSS------DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSLWETRIS---PNVVYSLQHLQN 328 (430)
Q Consensus 260 d~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~---~~~v~~l~~~s~ 328 (430)
|..+ .+++..+.. ....|+++.|+|+++.|+.++. +..+++-.+.+......+... -+.|+||+ |||
T Consensus 415 d~~s~~~s~~PkPik~~dN-Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~a-FSP 492 (514)
T KOG2055|consen 415 DGNSCFASTNPKPIKTVDN-LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMA-FSP 492 (514)
T ss_pred ccchhhccCCCCchhhhhh-hheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEE-ecC
Confidence 9653 445555554 4558999999999999997764 567999888876655554432 26799999 999
Q ss_pred CCCeEEEEcCCCeEEEEEcC
Q 014104 329 DTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 329 ~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+.+|+.|..+|.|.+|.+.
T Consensus 493 ~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCceEEeecCCCceeeEeec
Confidence 99999999999999999874
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-19 Score=151.12 Aligned_cols=163 Identities=12% Similarity=0.097 Sum_probs=132.5
Q ss_pred cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCC-------eeeEEeecCCCCeEEEEecCC--CEEEEEeCCC
Q 014104 185 VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR-------KCSQIIRMHCAPVTSLSLSED--QLIISGSSLG 254 (430)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg 254 (430)
.+..|.+.+. .+.|++++.. |++|++|.+|.||++..+ +++..+.+|...|..++|+|- +.|++++.|.
T Consensus 76 ~v~GHt~~vL-Di~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVL-DIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CccCcccccc-ccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3444554433 3556666665 999999999999998654 457788999999999999985 8999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~ 334 (430)
+|.+||+.+|+.+.++. |...|+++.|+.+|.+|++.+.|..|+|||.++++.+.+-.+|.+.-..-+.|-.+|..+-
T Consensus 155 ~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred eEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 99999999999998887 9999999999999999999999999999999999999988888754332223656788444
Q ss_pred EEc---CCCeEEEEEcCCC
Q 014104 335 VGG---IDGVLRVLDQNTG 350 (430)
Q Consensus 335 s~~---~dg~i~vwd~~~~ 350 (430)
||- .+..+-+||..+-
T Consensus 233 TGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNL 251 (472)
T ss_pred eccccccccceeccCcccc
Confidence 443 5678999998754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=154.70 Aligned_cols=238 Identities=14% Similarity=0.155 Sum_probs=189.1
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+++++||.+.|+|++++ || .++||+.|..|.+|+..- +-+-.+.+.+.+.++.|+|-...|++++=...-+|..+.
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~q 123 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQ 123 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeeccCCeeeEeecCchHHHhhhcchhhccccChhh
Confidence 578999999999999994 66 999999999999998553 445567777889999999999999987777888898776
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee---cCCCCeEEEEecCC------CEEEEEeC
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR---MHCAPVTSLSLSED------QLIISGSS 252 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~~~~~~------~~l~~~~~ 252 (430)
...... ........++|..++.+++.|-.||+|.+-+- +++.-..+. +.+++|++++|+|+ +.++....
T Consensus 124 K~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW 201 (1081)
T KOG1538|consen 124 KSVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW 201 (1081)
T ss_pred hhHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec
Confidence 542221 12222344566667788999999999999874 455433443 46789999999963 57888888
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
..++.++.+. |+.+.+-+. ..-...|+.+.|+|.++..|+.|+.+.+|. +.|-.+.++-.....|+.++ ..|++++
T Consensus 202 ~qTLSFy~Ls-G~~Igk~r~-L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~-~~PNsQ~ 277 (1081)
T KOG1538|consen 202 GQTLSFYQLS-GKQIGKDRA-LNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQ-AKPNSQY 277 (1081)
T ss_pred cceeEEEEec-ceeeccccc-CCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEE-EccCCce
Confidence 8999998875 666654333 344678999999999999999999999996 44777777766778999999 9999999
Q ss_pred EEEEcCCCeEEEEEcC
Q 014104 333 LVVGGIDGVLRVLDQN 348 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~ 348 (430)
++.|+.||+|-.|++.
T Consensus 278 v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEEEccCeeehhhhH
Confidence 9999999999999875
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-20 Score=175.25 Aligned_cols=262 Identities=18% Similarity=0.220 Sum_probs=194.4
Q ss_pred eCCCeEEEEecC--CC----eeEEeeecCCceeEEEEecCCCE----EE-EEeCCeEEEEEcCCC---c--c---cccCC
Q 014104 129 VGDKVMRLWSLE--GY----KCVEEYSLPNAASLVDFDFDESK----IV-GLIGTRICIWRRNGL---R--S---VFPSR 189 (430)
Q Consensus 129 ~~dg~i~iwd~~--~~----~~~~~~~~~~~~~~~~~~~~~~~----l~-~~~~~~i~vwd~~~~---~--~---~~~~~ 189 (430)
+.+.++.||.+. +. +.+..+.....-.-++|.+.+.. |+ |..||.|.+||...- . . ....|
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h 115 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH 115 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc
Confidence 335566666543 22 23344444455566888887765 66 788999999998752 1 2 24455
Q ss_pred CCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCC
Q 014104 190 EGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~ 264 (430)
.+++.. +.+..+.+ .+++|+.||.|.|||+...+.-.... ...+.|.+++|+.. ..|++++.+|.+.|||++..
T Consensus 116 ~G~V~g-LDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 116 TGPVLG-LDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred CCceee-eeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 565533 66666666 49999999999999997644332221 23568999999854 78999999999999999998
Q ss_pred ceeEEEecCCC-CCeEEEEEecCCC-EEEEEeCCC---eEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 265 QRVATLRSTDC-TGIKTLCYNPCSR-LVFAGTTAG---YASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 265 ~~~~~~~~~~~-~~v~~~~~~~~~~-~l~~~~~dg---~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
+.+-.+..... ..+..++|+|+.. .+++++.|. .|.+||+|. ..+++.+++|...|.++.|...|..+|++++.
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk 274 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK 274 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC
Confidence 88777765222 2478899999874 455555543 599999986 56778889999999999944445589999999
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE---cCeEEEEeeCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV---GMKKVVTTHNS 415 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~~~~l~t~~~D 415 (430)
|+.|.+|+.++++.+..+....+ .+..+.| +...++.++-|
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~n------------------------------------W~fdv~w~pr~P~~~A~asfd 318 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGN------------------------------------WCFDVQWCPRNPSVMAAASFD 318 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCc------------------------------------ceeeeeecCCCcchhhhheec
Confidence 99999999999999999876333 6777888 46679999999
Q ss_pred CeEEEEEecCCC
Q 014104 416 KYIRLWKFNYSD 427 (430)
Q Consensus 416 g~v~vw~~~~~~ 427 (430)
|.|.||.+....
T Consensus 319 gkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 319 GKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeeecCC
Confidence 999999987654
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=147.09 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=151.7
Q ss_pred EEeccccceeEEEe---cCCeEEEEeCCCeEEEEecCCCeeE-------EeeecC-CceeEEEEecCCCEEEEEeCCeEE
Q 014104 107 QWKAHSVGVDQCRM---KRGLILTGVGDKVMRLWSLEGYKCV-------EEYSLP-NAASLVDFDFDESKIVGLIGTRIC 175 (430)
Q Consensus 107 ~l~~h~~~v~~~~~---~~~~l~s~~~dg~i~iwd~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~ 175 (430)
.+.||+++|..++| +|..|||||.|.+|.||++..+-.. ..+.+| ..+..++|+|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHP-------------- 141 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHP-------------- 141 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecc--------------
Confidence 45799999999999 3449999999999999998764333 333333 1222233333
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCC
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSL 253 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~d 253 (430)
.-.. |++++.|.+|.+||+.+|+.+.++. |.+.|+++.|+ ++.++++++.|
T Consensus 142 --------------------------tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 142 --------------------------TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred --------------------------cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc
Confidence 2222 8899999999999999999988888 99999999999 56999999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEeCCCCce---eeeeecCCCceEEEEEee
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT---TAGYASCWDLRTMKS---LWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~s 327 (430)
..|+|||.++++.+..-..+.......+.|-.+|..+-+|. .+..+-+||..+.+. +.++....+.+.- |+.
T Consensus 195 KkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~P--FyD 272 (472)
T KOG0303|consen 195 KKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLP--FYD 272 (472)
T ss_pred ceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEe--eec
Confidence 99999999999999888663334566677888888555553 467899999876432 3344444333322 588
Q ss_pred CCCCeEE-EEcCCCeEEEEEcCCCce
Q 014104 328 NDTSTLV-VGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 328 ~~~~~l~-s~~~dg~i~vwd~~~~~~ 352 (430)
+|.+.++ +|-.|+.|+.|.+.+..+
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCCCc
Confidence 9988775 555899999999987653
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-16 Score=135.26 Aligned_cols=232 Identities=16% Similarity=0.192 Sum_probs=172.6
Q ss_pred ccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC--CeEEEEEcCCCcccc
Q 014104 112 SVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG--TRICIWRRNGLRSVF 186 (430)
Q Consensus 112 ~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~--~~i~vwd~~~~~~~~ 186 (430)
...+....|+.. .|..|+.|| -++++.+..... .-...++..++..-+....++ .+.+ ..+++++++....+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~-~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC-FSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHh-hcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEE
Confidence 345566667543 677777777 477776653331 111235666677777777776 4433 458888888776554
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC---CCCeEEEEecCC-CEEEEE--eCCCeEEEEe
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH---CAPVTSLSLSED-QLIISG--SSLGSIAISG 260 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~~~~-~~l~~~--~~dg~i~vwd 260 (430)
...-.+ .++++..+.+.+++.-.+ .|+|||+.+-+.++++..- ...+.++.++++ .+++.= ...|.|.+||
T Consensus 83 e~~fpt--~IL~VrmNr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d 159 (391)
T KOG2110|consen 83 EIFFPT--SILAVRMNRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFD 159 (391)
T ss_pred EEecCC--ceEEEEEccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEE
Confidence 333222 346677777778877776 4999999999998888643 334555665543 466543 3568999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEeCCCCceeeeeecCC--CceEEEEEeeCCCCeEEEEc
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY-ASCWDLRTMKSLWETRISP--NVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~--~~v~~l~~~s~~~~~l~s~~ 337 (430)
..+-+.+..+.. |.+.+-+++|+|+|.+||+++..|+ |++|.+.+|+.+.+++... ..|++++ |+|++++|++.|
T Consensus 160 ~~nl~~v~~I~a-H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~-Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 160 TINLQPVNTINA-HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLS-FSPDSQFLAASS 237 (391)
T ss_pred cccceeeeEEEe-cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEE-ECCCCCeEEEec
Confidence 999999999996 9999999999999999999999997 6999999999999987554 5789998 999999999999
Q ss_pred CCCeEEEEEcCCC
Q 014104 338 IDGVLRVLDQNTG 350 (430)
Q Consensus 338 ~dg~i~vwd~~~~ 350 (430)
..++|++|.++..
T Consensus 238 ~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 238 NTETVHIFKLEKV 250 (391)
T ss_pred CCCeEEEEEeccc
Confidence 9999999998743
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-16 Score=149.03 Aligned_cols=247 Identities=25% Similarity=0.407 Sum_probs=192.0
Q ss_pred EEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCe-eEEeeecCC--ceeEEEE-ecCCC-EEE-E-EeCCeEEEE
Q 014104 107 QWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYK-CVEEYSLPN--AASLVDF-DFDES-KIV-G-LIGTRICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~--~~~~~~~-~~~~~-~l~-~-~~~~~i~vw 177 (430)
.+.+|...+.++.+. .+ .++.++.|+.+.+|+...+. .+..+.... ....+.+ .+++. .++ . ..++.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999994 44 78888899999999998876 666666633 3444555 77777 444 3 448999999
Q ss_pred EcCC-Cc--ccccCCCCceeeeeEEEEcCCceEEEec-CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-EEEEEe
Q 014104 178 RRNG-LR--SVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGS 251 (430)
Q Consensus 178 d~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~ 251 (430)
+... .. .....+... ...+.+.+.+..+++++. |+.+++|++.++..+..+.+|...|.+++++|+ . .+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSES-VTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCccc-EEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 9997 33 223333333 335666666666777775 999999999988899999999999999999976 4 555559
Q ss_pred CCCeEEEEeCCCCceeE-EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce-eeeeecCCCceEEEEEeeCC
Q 014104 252 SLGSIAISGLSSDQRVA-TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS-LWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~s~~ 329 (430)
.|+.|++||...+..+. .+.. |.... ...|+|++.++++++.|+.+++|+.+.... +..+..|...+.++. +.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSG-HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA-FSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCC-CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEE-ECCC
Confidence 99999999999888877 5665 55554 338999998899999999999999987664 444467888999998 9998
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
+..+++++.|+.+.+||..+........
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEee
Confidence 8888889989999999998777666554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-19 Score=158.52 Aligned_cols=114 Identities=18% Similarity=0.245 Sum_probs=94.8
Q ss_pred eEEEEEec-CCCEEEEEeCCCeEEEEeCCCC-------ceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcC
Q 014104 278 IKTLCYNP-CSRLVFAGTTAGYASCWDLRTM-------KSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 278 v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~ 348 (430)
|+.+.|+| |...|++++.||.|++|.+..+ .+...+..|...|+++. |+|- ...|++++.|-+|++||+.
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slR-fHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLR-FHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEE-ecchhhhHhhhhhccceeeeeehh
Confidence 67778877 4468999999999999998653 45567889999999999 8774 4588999999999999999
Q ss_pred CCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 349 TGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+++....+.+ |++.|..++| ||+.++|.+.||+|+||+-..+
T Consensus 709 ~~~~~~~l~g------------------------------------HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 709 NAKLYSRLVG------------------------------------HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred hhhhhheecc------------------------------------CcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 9888777765 4457788888 5888999999999999998776
Q ss_pred Cc
Q 014104 427 DK 428 (430)
Q Consensus 427 ~~ 428 (430)
++
T Consensus 753 e~ 754 (1012)
T KOG1445|consen 753 EQ 754 (1012)
T ss_pred CC
Confidence 54
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-18 Score=142.85 Aligned_cols=237 Identities=15% Similarity=0.145 Sum_probs=172.4
Q ss_pred EEEEecCCCEEE-EEeCCeEEEEEcCCCc--------------ccccCCCCceeeeeEEEE----cCC---ceEEEecCC
Q 014104 156 LVDFDFDESKIV-GLIGTRICIWRRNGLR--------------SVFPSREGTFMKGLCMRY----FDP---EAVVGCEDG 213 (430)
Q Consensus 156 ~~~~~~~~~~l~-~~~~~~i~vwd~~~~~--------------~~~~~~~~~~~~~~~~~~----~~~---~l~~~~~dg 213 (430)
...|+|||..|+ .+.|..+.+|++...- ....-..+..+...|+-+ ..| .+++.+.+.
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 368999999988 7889999999975311 112223344444444432 222 388889999
Q ss_pred eEEEEECCCCeeeEEeec--CCC---CeEEEEecCC-CEEEEEeCCCeEEEEeC-CCCceeEE---Ee---cCCCCCeEE
Q 014104 214 TARVFDMYSRKCSQIIRM--HCA---PVTSLSLSED-QLIISGSSLGSIAISGL-SSDQRVAT---LR---STDCTGIKT 280 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~--~~~---~i~~~~~~~~-~~l~~~~~dg~i~vwd~-~~~~~~~~---~~---~~~~~~v~~ 280 (430)
.|++||.-+|+....+.+ |.. .-.+++|+|+ .+|++ +....|++||+ +.|+.... +. ....+-+.+
T Consensus 134 PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc 212 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISC 212 (406)
T ss_pred ceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeee
Confidence 999999999987766653 333 3468999987 55554 56789999999 55543221 11 113457899
Q ss_pred EEEecCCC-EEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCC-CceEEEEE
Q 014104 281 LCYNPCSR-LVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNT-GEVLSRCV 357 (430)
Q Consensus 281 ~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~-~~~~~~~~ 357 (430)
++|+|... .+++|+....+-||.-..+.++..+-+|.+.|+.+. |.++|+.|++|+ .|-.|-.||++. +.++..+.
T Consensus 213 ~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~-~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~ 291 (406)
T KOG2919|consen 213 FAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ-WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALE 291 (406)
T ss_pred eeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE-eccCcCeecccccCCCeEEEEeehhccchhhhhh
Confidence 99999654 899999999999999999999999999999999999 999999999998 467899999984 45566665
Q ss_pred eccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecC
Q 014104 358 MDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 358 ~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|... ..+.....++..++.|++|+.||.|++||++.
T Consensus 292 rhv~~-------------------------------TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 292 RHVGD-------------------------------TNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhccC-------------------------------ccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 44330 00111223444589999999999999999986
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-19 Score=171.86 Aligned_cols=236 Identities=18% Similarity=0.257 Sum_probs=183.3
Q ss_pred ceeEEEe------cCCeEEEEeCCCeEEEEecCC---C---eeEEeeec-CCceeEEEEecCCC-EEE-EEeCCeEEEEE
Q 014104 114 GVDQCRM------KRGLILTGVGDKVMRLWSLEG---Y---KCVEEYSL-PNAASLVDFDFDES-KIV-GLIGTRICIWR 178 (430)
Q Consensus 114 ~v~~~~~------~~~~l~s~~~dg~i~iwd~~~---~---~~~~~~~~-~~~~~~~~~~~~~~-~l~-~~~~~~i~vwd 178 (430)
.-+.++| +.|.|+.|..||+|.+||... + +.+.+... ++.+..+.|++... .|+ |+.+|.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 3456666 124799999999999999765 2 23344444 46677799999766 666 88899999999
Q ss_pred cCCCcccccC-CCCceeeeeEEEEcCCc---eEEEecCCeEEEEECCCCeeeEEeecCCC--CeEEEEecCC--CEEEEE
Q 014104 179 RNGLRSVFPS-REGTFMKGLCMRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIRMHCA--PVTSLSLSED--QLIISG 250 (430)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~---l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~~~~~~~--~~l~~~ 250 (430)
++..+..+.. .......+.+++++.+. |++++.+|.+.|||++..+.+-.+..+.+ .+..++|+|+ ..++++
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeee
Confidence 9986644333 22233345566655444 89999999999999998888877776654 4778999986 567777
Q ss_pred eCCC---eEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 251 SSLG---SIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 251 ~~dg---~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
+.|. .|.+||+|.. ..++.+++ |..+|.++.|++.+ .+|++++.|+.|.+|+..+++.+.++....++++.+.
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~~-H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~- 303 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILEG-HQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ- 303 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhcc-cccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee-
Confidence 6554 6999999854 45666665 88999999999977 7888999999999999999999999998889999999
Q ss_pred eeCCCC-eEEEEcCCCeEEEEEcCCCc
Q 014104 326 LQNDTS-TLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 326 ~s~~~~-~l~s~~~dg~i~vwd~~~~~ 351 (430)
|.|... .+++++-||.|.|+.+..+.
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 777665 88888999999999987543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.2e-18 Score=159.46 Aligned_cols=281 Identities=15% Similarity=0.166 Sum_probs=197.1
Q ss_pred ceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC----CceeEEEEec--CCCEEE-EEeCCeEEEEEcCCC--
Q 014104 114 GVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP----NAASLVDFDF--DESKIV-GLIGTRICIWRRNGL-- 182 (430)
Q Consensus 114 ~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~--~~~~l~-~~~~~~i~vwd~~~~-- 182 (430)
+-..+.|. -. .++++...-.|+|||.+.++.+..|..+ ..+..+.+-. |...++ ++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 44455563 23 7777877779999999999998888754 3344455443 223344 999999999984221
Q ss_pred ---ccc--ccCCC------CceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEec-C-CCEEE
Q 014104 183 ---RSV--FPSRE------GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLS-E-DQLII 248 (430)
Q Consensus 183 ---~~~--~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~-~-~~~l~ 248 (430)
+.+ +.... .....++.|......|++++.-..|+|||....+++..+.. ....|+++.-+ + ++.++
T Consensus 1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence 111 11111 11123455555566688888889999999988777766653 34467777766 3 48999
Q ss_pred EEeCCCeEEEEeCCCCce---eEEEecCCCCC--eEEEEEecCCC-EEEEEeCCCeEEEEeCCCCcee--eeeecCC--C
Q 014104 249 SGSSLGSIAISGLSSDQR---VATLRSTDCTG--IKTLCYNPCSR-LVFAGTTAGYASCWDLRTMKSL--WETRISP--N 318 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~--~ 318 (430)
+|..||.|++||.+.... +...+. |... |..+.+.+.|- .|++|+.+|.|++||++..... ..+..|. +
T Consensus 1226 AGfaDGsvRvyD~R~a~~ds~v~~~R~-h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yG 1304 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPPDSLVCVYRE-HNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYG 1304 (1387)
T ss_pred EeecCCceEEeecccCCccccceeecc-cCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccC
Confidence 999999999999885433 444444 6655 99999998775 4999999999999999974222 2233333 3
Q ss_pred -ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCC
Q 014104 319 -VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP 397 (430)
Q Consensus 319 -~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~ 397 (430)
..+++. .++....+|+|+. +.|+||++. |+.+..++.++. +.....+
T Consensus 1305 s~lTal~-VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~-----------------------------F~~q~~g 1352 (1387)
T KOG1517|consen 1305 SALTALT-VHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPG-----------------------------FMGQRIG 1352 (1387)
T ss_pred ccceeee-eccCCCeeeecCc-ceEEEEecC-hhhhcccccCcc-----------------------------cccCcCC
Confidence 488998 9999999999998 999999987 777777765433 1112235
Q ss_pred CeeEEEEcCe--EEEEeeCCCeEEEEEecCCC
Q 014104 398 PITCLAVGMK--KVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 398 ~v~~v~~~~~--~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+.|++|+.. .+|+|+.|.+|.||....+.
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 6799999754 47889999999999987654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-19 Score=154.89 Aligned_cols=291 Identities=12% Similarity=0.127 Sum_probs=212.7
Q ss_pred cCCEeEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCcee--EEEEecC--CCEEE-EEeCC
Q 014104 100 EGRIDIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS--LVDFDFD--ESKIV-GLIGT 172 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~--~~~l~-~~~~~ 172 (430)
+.......|.+|.+.|..|.|. .| .|+|||.|..|.+||...+.....+...+... -..|-|. .+.++ .+.||
T Consensus 130 qr~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 130 QRLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred HHhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 3334556789999999999994 45 99999999999999999988887777543322 2445552 23455 88899
Q ss_pred eEEEEEcCCCc-----ccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEe---ecCCC---CeEEEE
Q 014104 173 RICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQII---RMHCA---PVTSLS 240 (430)
Q Consensus 173 ~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~---~i~~~~ 240 (430)
++++=.+.... ..+..+.+++ ..+++.++.+. +.+++.|+.+.-+|++++.+...+ +.+.. ...+++
T Consensus 210 qvr~s~i~~t~~~e~t~rl~~h~g~v-hklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia 288 (559)
T KOG1334|consen 210 QVRVSEILETGYVENTKRLAPHEGPV-HKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA 288 (559)
T ss_pred ceeeeeeccccceecceecccccCcc-ceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence 99987654322 1233444443 45677777777 999999999999999887543332 22222 456778
Q ss_pred ecCC--CEEEEEeCCCeEEEEeCCCCce------eEEEec-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-
Q 014104 241 LSED--QLIISGSSLGSIAISGLSSDQR------VATLRS-----TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT- 306 (430)
Q Consensus 241 ~~~~--~~l~~~~~dg~i~vwd~~~~~~------~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 306 (430)
.+|. ..+++|+.|..+++||.+.-.. +.++-. .....|++++|+.++.-|.+...|-.|+++.-..
T Consensus 289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG 368 (559)
T ss_pred cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence 8764 6899999999999999874222 222222 1334899999998777777777888899995432
Q ss_pred -C----------ceeee-eecCC--CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 307 -M----------KSLWE-TRISP--NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 307 -~----------~~~~~-~~~~~--~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
| ..+.. +++|. ..|.++-||.|...|+++||.-|.|.||+-.+++.++-+.+...
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~----------- 437 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH----------- 437 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-----------
Confidence 2 12223 77886 45888889999999999999999999999999998888776433
Q ss_pred eEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCC
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.|+|+..+ -..|||.|-|.-||||-..+.+
T Consensus 438 -------------------------VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~e 469 (559)
T KOG1334|consen 438 -------------------------VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAE 469 (559)
T ss_pred -------------------------eEeccCCCCCCchhhccCCccceeeecCCccc
Confidence 78888886 4569999999999999875444
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-18 Score=139.45 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=168.1
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC------CceeEEEEecCCCEEEEEeCCeEEEEEcC-CCc--c---c-ccCCC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP------NAASLVDFDFDESKIVGLIGTRICIWRRN-GLR--S---V-FPSRE 190 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~i~vwd~~-~~~--~---~-~~~~~ 190 (430)
++++.+.|.-|.+||.-+|+....+..- .+..+++|+|||.+|+++....|+++|+. .++ . + .....
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccc
Confidence 8999999999999999999988877642 34567999999999999999999999994 333 1 1 11112
Q ss_pred --CceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEeCCC-C
Q 014104 191 --GTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSS-D 264 (430)
Q Consensus 191 --~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd~~~-~ 264 (430)
..+...+++.+... .++.|+....+-||.-..+.++..+.+|.+.|+.+.|.++ +.+.+|+ .|..|..||++. +
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR 284 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence 22333344444444 3899999999999988888999999999999999999965 7777776 477899999985 4
Q ss_pred ceeEEEecCCCCCeEEE--EEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 265 QRVATLRSTDCTGIKTL--CYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
.++..+..+....-..| ...|++++|++|+.||.|++||++. +..+..+..+...++.++ ++|--..+++++..
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs-lnP~mpilatssGq 361 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS-LNPIMPILATSSGQ 361 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee-cCcccceeeeccCc
Confidence 55666665333233334 4468999999999999999999998 777888888999999998 99988888887754
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-16 Score=148.16 Aligned_cols=320 Identities=14% Similarity=0.140 Sum_probs=213.7
Q ss_pred eEEEEeccccceeEEEe---cC--CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEE-------------------
Q 014104 104 DIDQWKAHSVGVDQCRM---KR--GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDF------------------- 159 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~---~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------- 159 (430)
++..|.+|..++..+.+ +. .++++++.||+|++||...+++++++..+..+..+.+
T Consensus 49 ~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~ 128 (792)
T KOG1963|consen 49 CITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYS 128 (792)
T ss_pred hhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccce
Confidence 45678999999999988 23 2888999999999999999988887764332222211
Q ss_pred ----------------------------------------ecCCCEEEEEeCCeEEEEEcCCCcccc---cCCCCce--e
Q 014104 160 ----------------------------------------DFDESKIVGLIGTRICIWRRNGLRSVF---PSREGTF--M 194 (430)
Q Consensus 160 ----------------------------------------~~~~~~l~~~~~~~i~vwd~~~~~~~~---~~~~~~~--~ 194 (430)
++.+.+.....+..+.+|+........ .....|. .
T Consensus 129 ~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~ 208 (792)
T KOG1963|consen 129 ILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNI 208 (792)
T ss_pred eeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccc
Confidence 111111122333445556655432111 1111121 3
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCC--C--eeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEE
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYS--R--KCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~ 269 (430)
....+++.+..+++|..||.|.+|.--. + .....+.-|..+|+++.|++ +.++++|+.+|.+.+|.+.+++ .+-
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqf 287 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQF 287 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-ccc
Confidence 5577778888899999999999996322 1 23466778999999999995 4899999999999999999988 333
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-----------CCceEEEEEeeCCCCeEEEEcC
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-----------PNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----------~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
++. ..++|..+.++||+.+.+....|..|.+....+.+...++.+- .+-.+.+. ++|.-+.++-.+.
T Consensus 288 LPR-Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~-idpr~~~~vln~~ 365 (792)
T KOG1963|consen 288 LPR-LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVS-IDPRTNSLVLNGH 365 (792)
T ss_pred ccc-cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEE-EcCCCCceeecCC
Confidence 333 6779999999999999999999999999988665443332221 22344454 6775566666677
Q ss_pred CCeEEEEEcCCCceEEEEEec-----------------------------------------------------------
Q 014104 339 DGVLRVLDQNTGEVLSRCVMD----------------------------------------------------------- 359 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~----------------------------------------------------------- 359 (430)
.|.|.+||+-+.+.++.+..-
T Consensus 366 ~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~ 445 (792)
T KOG1963|consen 366 PGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI 445 (792)
T ss_pred CceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE
Confidence 777877777665554444320
Q ss_pred ---------cC------------cceeeeccCCceEEEeec------ccccCCcccccCCCCCCCCeeEEEEc-CeEEEE
Q 014104 360 ---------IG------------SASSSSNKVSGVIERNEG------RRLSAGCCIDRIPKTIRPPITCLAVG-MKKVVT 411 (430)
Q Consensus 360 ---------~~------------~~~~~~~s~d~~v~~~~~------~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~l~t 411 (430)
.. ...+++.+.||.+++|.. .......+...+...|..++++.+|. ...+++
T Consensus 446 L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla 525 (792)
T KOG1963|consen 446 LNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA 525 (792)
T ss_pred EEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE
Confidence 00 003455666777766654 22233333444444578899999993 236777
Q ss_pred eeCCCeEEEEEecCC
Q 014104 412 THNSKYIRLWKFNYS 426 (430)
Q Consensus 412 ~~~Dg~v~vw~~~~~ 426 (430)
.|.|++|.+||..+.
T Consensus 526 ~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 526 VSFDDTITIWDYDTK 540 (792)
T ss_pred EecCCEEEEecCCCh
Confidence 788899999999874
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-16 Score=134.99 Aligned_cols=231 Identities=14% Similarity=0.160 Sum_probs=173.7
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecC--CeEEEEECCCCeeeEEeecCC
Q 014104 156 LVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED--GTARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~ 233 (430)
.+.|..+...|..+.....++|+.+.... +.........++.+.+....++..+.+ +.+++++...+..+..+. ..
T Consensus 10 ~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k-~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fp 87 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDGYKIFSCSPFEK-CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FP 87 (391)
T ss_pred eeeeccceeEEEccCCCceeEEecCchHH-hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe-cC
Confidence 34455566666644444456777665444 222223334566677777775555544 458999998887777765 56
Q ss_pred CCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecC--CCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCce
Q 014104 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST--DCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKS 309 (430)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~ 309 (430)
.+|.++.++..++++. -. ..|+|||+++.+.++++..- +...+.++.+++.+.+++- ....|.|.+||+.+-++
T Consensus 88 t~IL~VrmNr~RLvV~-Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~ 165 (391)
T KOG2110|consen 88 TSILAVRMNRKRLVVC-LE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP 165 (391)
T ss_pred CceEEEEEccceEEEE-Ec-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee
Confidence 7899999976655544 33 34999999999999988753 3446777777777778884 33468899999999999
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCCCe-EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccc
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGIDGV-LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI 388 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~ 388 (430)
+..+..|.+.+-+++ |+++|.+|||+|..|+ |||+.+.+|+.+++|+-...
T Consensus 166 v~~I~aH~~~lAala-fs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------------------------- 217 (391)
T KOG2110|consen 166 VNTINAHKGPLAALA-FSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------------------------- 217 (391)
T ss_pred eeEEEecCCceeEEE-ECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---------------------------
Confidence 999999999999999 9999999999999998 59999999999999975332
Q ss_pred ccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 389 DRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 389 ~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
-..|.+++| |+.+|++.|..++|.|++++.
T Consensus 218 -------~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 218 -------PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -------eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 126788888 588899999999999999864
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.7e-17 Score=129.03 Aligned_cols=225 Identities=16% Similarity=0.187 Sum_probs=156.8
Q ss_pred cccCCEeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEE
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIW 177 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vw 177 (430)
..+|..++-..++|.++|+.++|.+.+|++|+. |.|+=|.....+.-.- .-.+|
T Consensus 48 ~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~-------------------------~K~lw 101 (325)
T KOG0649|consen 48 EPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLA-------------------------TKRLW 101 (325)
T ss_pred CCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhcc-------------------------chhhh
Confidence 445556777789999999999999998888876 9999997654222100 00122
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSI 256 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i 256 (430)
.+..+..+-.. +-..+..+.+.+..+.++.++.|+.++-||+++|+...++++|++-|.++.-- .+..+++|++||++
T Consensus 102 e~~~P~~~~~~-evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtv 180 (325)
T KOG0649|consen 102 EVKIPMQVDAV-EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTV 180 (325)
T ss_pred hhcCccccCcc-cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccE
Confidence 22221111000 00112234444445558888899999999999999999999999999999984 45789999999999
Q ss_pred EEEeCCCCceeEEEecC---------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 257 AISGLSSDQRVATLRST---------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
++||.++++.+..+... ....|.+++. +..+|++|+.- .+.+|+++..++...+.. .+.+..+. |
T Consensus 181 RvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse~t~vfpi-pa~v~~v~-F- 254 (325)
T KOG0649|consen 181 RVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSESTCVFPI-PARVHLVD-F- 254 (325)
T ss_pred EEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCCceEEEec-ccceeEee-e-
Confidence 99999999998877531 1124566665 56789888654 599999999888776653 24566665 4
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
....+++++..+.|.-|.+. |..-...+
T Consensus 255 -~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip 282 (325)
T KOG0649|consen 255 -VDDCVLIGGEGNHVQSYTLN-GVLQANIP 282 (325)
T ss_pred -ecceEEEeccccceeeeeec-cEEEEecc
Confidence 34677888888889988875 54444333
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.6e-18 Score=153.54 Aligned_cols=239 Identities=18% Similarity=0.275 Sum_probs=173.3
Q ss_pred EEEecCCCEEE---EEeCCeEEEEEcCCCccc-----ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCC----
Q 014104 157 VDFDFDESKIV---GLIGTRICIWRRNGLRSV-----FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR---- 223 (430)
Q Consensus 157 ~~~~~~~~~l~---~~~~~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~---- 223 (430)
-.|..+...++ .+..|.|.||+++..-.+ -...++..+..+.|.++++. |++++.||.|++|.+..+
T Consensus 585 nGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 585 NGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred CceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 34555555655 667899999999865432 23344555666777777666 999999999999998654
Q ss_pred ---eeeEEeecCCCCeEEEEecC--CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 014104 224 ---KCSQIIRMHCAPVTSLSLSE--DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 224 ---~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
.+...+..|...|+++.|+| .+.+++++.|-+|++||+++++....+.+ |.+.|..++|+|+|+.+++.+.||+
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g-HtdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG-HTDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc-CcCceeEEEECCCCcceeeeecCce
Confidence 34567889999999999997 38999999999999999999999889988 8999999999999999999999999
Q ss_pred EEEEeCCCCc-eeeeeecCC-CceEEEEEeeCCCCeEEEEcCC----CeEEEEEcCC--CceEEEEEeccCcceeeeccC
Q 014104 299 ASCWDLRTMK-SLWETRISP-NVVYSLQHLQNDTSTLVVGGID----GVLRVLDQNT--GEVLSRCVMDIGSASSSSNKV 370 (430)
Q Consensus 299 i~i~d~~~~~-~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~d----g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~s~ 370 (430)
|++|..+.++ ++.+-.+.. ..--.+. |--+|+++++.+.| ..|.+||..+ +..+.+...+...
T Consensus 744 ~rVy~Prs~e~pv~Eg~gpvgtRgARi~-wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap-------- 814 (1012)
T KOG1445|consen 744 LRVYEPRSREQPVYEGKGPVGTRGARIL-WACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP-------- 814 (1012)
T ss_pred EEEeCCCCCCCccccCCCCccCcceeEE-EEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC--------
Confidence 9999998754 333322211 1112333 55689988888765 4578888764 2334433322110
Q ss_pred CceEEEeecccccCCcccccCCCCCCCCeeEEEEc-CeEEEEeeCCCeEEEEEecCCCcCC
Q 014104 371 SGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG-MKKVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 371 d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
+.-|-....| +-.++||-.|..|.+|.+-..+.|+
T Consensus 815 -------------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~ 850 (1012)
T KOG1445|consen 815 -------------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYL 850 (1012)
T ss_pred -------------------------ccccccccCCCceEEEecCCCceEEEEEecCCCcee
Confidence 0112222333 4568899999999999988777654
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=137.31 Aligned_cols=194 Identities=19% Similarity=0.219 Sum_probs=148.5
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
...+.++..|..+++|+.||.|.+||+.|...-+.+.+|.-+|++++|+++ ..|+++|.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 345666777888999999999999999999988999999999999999965 899999999999999999999999998
Q ss_pred CCCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCCCce--eeee-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 273 TDCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRTMKS--LWET-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~--~~~~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
...+|..+.|+|..+..+ +.-.+..-.+-++...+. +..- .+..+.+-+-.+|.+.|+++++|...|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 788999999999654333 222333344555543221 1100 00001111111388999999999999999999999
Q ss_pred CCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 349 TGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+-+++..++.... ..|..+-+ .|++|+.-+.|..||.|+++
T Consensus 184 t~e~vas~rits~-----------------------------------~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 184 TLECVASFRITSV-----------------------------------QAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred hheeeeeeeechh-----------------------------------eeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9999988875331 25566555 69999999999999999976
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=135.56 Aligned_cols=242 Identities=15% Similarity=0.202 Sum_probs=176.4
Q ss_pred EEEeccccceeEEEe-c--CCeEEEEeCC-------CeEEEEecCCC---------eeEEeee--cCCceeEEEEecCCC
Q 014104 106 DQWKAHSVGVDQCRM-K--RGLILTGVGD-------KVMRLWSLEGY---------KCVEEYS--LPNAASLVDFDFDES 164 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~--~~~l~s~~~d-------g~i~iwd~~~~---------~~~~~~~--~~~~~~~~~~~~~~~ 164 (430)
+.|..|.+.|..++- | .+.|+|+..+ -.+.||.+... +++..+. ..+.+.++.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 467778899999887 3 2377776553 25789987542 2333333 235678899999999
Q ss_pred EEEEEeCCeEEEEEcCCCccccc----C-CC--CceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEee-cCCCC
Q 014104 165 KIVGLIGTRICIWRRNGLRSVFP----S-RE--GTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR-MHCAP 235 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~~----~-~~--~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~ 235 (430)
.+++-.++.|.+|+++....+.. . .. .+....-.|++..+. -+....|+++..||+++.++...+. .|...
T Consensus 137 klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~ 216 (370)
T KOG1007|consen 137 KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQR 216 (370)
T ss_pred eeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcce
Confidence 99988899999999987654211 1 01 111222334442222 5556678899999999987766654 68889
Q ss_pred eEEEEecCC--CEEEEEeCCCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCC----
Q 014104 236 VTSLSLSED--QLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTM---- 307 (430)
Q Consensus 236 i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~---- 307 (430)
|..+.|+|+ .+|++|++||.|++||.+.. .+++.+.+ |...|.++.|+|.. +++.+|+.|..|.+|....-
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~-HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG-HSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC-CceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 999999988 58999999999999999854 45777776 88899999999965 56779999999999965321
Q ss_pred -------------------------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 308 -------------------------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 308 -------------------------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
..+.++..|.+.|++++|-+.|.-.+++-+.||.+.|=.+.
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12346778999999999545555677889999999887765
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-18 Score=151.21 Aligned_cols=229 Identities=10% Similarity=0.067 Sum_probs=156.2
Q ss_pred EEE-EEeCCeEEEEEcCCCc-----ccccCCCCceeeeeE--EEEcCCceEEEecCCeEEEEECCCCeeeEE--eecCCC
Q 014104 165 KIV-GLIGTRICIWRRNGLR-----SVFPSREGTFMKGLC--MRYFDPEAVVGCEDGTARVFDMYSRKCSQI--IRMHCA 234 (430)
Q Consensus 165 ~l~-~~~~~~i~vwd~~~~~-----~~~~~~~~~~~~~~~--~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--~~~~~~ 234 (430)
.|+ +..+|.|.++|..... ..+.....|...++. +.+....|++++.|.++++||+.+++++.. +.+|.+
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 344 7788999999987543 223444444433444 444333499999999999999999988776 889999
Q ss_pred CeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce---------------------------eEEEecCCCCCeEE---EE
Q 014104 235 PVTSLSLSED--QLIISGSSLGSIAISGLSSDQR---------------------------VATLRSTDCTGIKT---LC 282 (430)
Q Consensus 235 ~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~~~~~~v~~---~~ 282 (430)
.|.+++|.+. ..|++|+.||.|.|||++-... +..-. .+...|.+ +.
T Consensus 146 SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k-A~s~ti~ssvTvv 224 (720)
T KOG0321|consen 146 SVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK-AASNTIFSSVTVV 224 (720)
T ss_pred ccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc-cccCceeeeeEEE
Confidence 9999999964 6899999999999999874320 00000 12223333 44
Q ss_pred EecCCCEEEEEeC-CCeEEEEeCCCCceeee--------eecC---CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 283 YNPCSRLVFAGTT-AGYASCWDLRTMKSLWE--------TRIS---PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 283 ~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~--------~~~~---~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
+..|...||+++. |+.|++||++....... +..| .-.+.++. ....|.+|++.+.|+.|++||+.+-
T Consensus 225 ~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~-lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 225 LFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLI-LDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEE-ecCCCCeEEEEecCCcEEEEecccc
Confidence 4457888998777 99999999987543221 2223 23466776 7777889988888999999999743
Q ss_pred c--eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 351 E--VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 351 ~--~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
. ++..+.++.. ... ..-.++.+|+.++++|+.|....+|.++..+
T Consensus 304 s~sP~~~~sg~~~----------~sf----------------------~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 304 SISPVAEFSGKLN----------SSF----------------------YVKSELSPDDCSLLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred CcCchhhccCccc----------cee----------------------eeeeecCCCCceEeccCCCcceeeeeecCcc
Confidence 2 2222222111 000 0123466689999999999999999998765
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-17 Score=133.86 Aligned_cols=292 Identities=12% Similarity=0.119 Sum_probs=190.3
Q ss_pred eEEEEeC----CCeEEEEecCC--CeeEE-eeecC-CceeEEEEecCCCEEE-EEeC--------CeEEEEEcCCCcc--
Q 014104 124 LILTGVG----DKVMRLWSLEG--YKCVE-EYSLP-NAASLVDFDFDESKIV-GLIG--------TRICIWRRNGLRS-- 184 (430)
Q Consensus 124 ~l~s~~~----dg~i~iwd~~~--~~~~~-~~~~~-~~~~~~~~~~~~~~l~-~~~~--------~~i~vwd~~~~~~-- 184 (430)
.+++|.. |..|.+-+++. ++... .|.++ +.+..++-+|-...++ +... ..+.+|.+.....
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 4555543 56777666554 33332 33333 4455577777555554 3222 2477999865331
Q ss_pred -------cccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCee-eEEee-----cCCCCeEEEEecC--C-CE
Q 014104 185 -------VFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIR-----MHCAPVTSLSLSE--D-QL 246 (430)
Q Consensus 185 -------~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~~~~~~--~-~~ 246 (430)
+........ ...+.|.+++..+++-. |..|.+|++..+.. +..+. ++....++-+|+| + +.
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 111121222 34555666555566655 77999999987755 33332 3455678889997 2 55
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEE
Q 014104 247 IISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~ 324 (430)
+++ ..|+++..||+++.+....++..|...|..+.|+|+.+ +|++++.||.|++||.+. ..++.++.+|...|+++.
T Consensus 187 v~t-t~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 187 VAT-TSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred EEE-eCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 555 45899999999999999999988999999999999876 677999999999999986 567899999999999999
Q ss_pred EeeCC-CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 325 HLQND-TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 325 ~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
|+|. .+++++|+.|..|.+|...+-.....+...... +-++|.... .....++ +..+ .....|.+.|.+++
T Consensus 266 -fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de----se~e~~dse-er~kpL~-dg~l-~tydehEDSVY~~a 337 (370)
T KOG1007|consen 266 -FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE----SESEDEDSE-ERVKPLQ-DGQL-ETYDEHEDSVYALA 337 (370)
T ss_pred -ecCccceEEEecCCCceeEEEecccccccccccccccc----ccCcchhhH-Hhccccc-cccc-ccccccccceEEEe
Confidence 7664 568899999999999987643332233222110 000000000 0000000 0011 12246899999999
Q ss_pred E---cCeEEEEeeCCCeEEEEEecC
Q 014104 404 V---GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 404 ~---~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
| |+-.+++-+.||++.|=.+..
T Consensus 338 WSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 338 WSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred eccCCCeeEEEeccCceEEeecCCh
Confidence 9 467789999999998876653
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-18 Score=138.97 Aligned_cols=199 Identities=13% Similarity=0.177 Sum_probs=142.9
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCCCe-----eeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCc--
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRK-----CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ-- 265 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~-- 265 (430)
..++++.++..+++++.|++|++|+++.-. +++.- ..-+-.+.+.|.|+ .++++.-...++++|-+...+
T Consensus 90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG 168 (420)
T KOG2096|consen 90 TDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDG 168 (420)
T ss_pred eeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccC
Confidence 446666677779999999999999987532 22111 11235678999988 566666677789999865321
Q ss_pred -ee--------EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 266 -RV--------ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 266 -~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
.- ..|...|...+..+-...++.++++++.|..|.+|+++ |+.+..+......-+..+ .||+|++++++
T Consensus 169 ~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa-vSP~GRFia~~ 246 (420)
T KOG2096|consen 169 SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAA-VSPDGRFIAVS 246 (420)
T ss_pred CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccccccee-eCCCCcEEEEe
Confidence 11 11233355567777777788999999999999999999 999888877666666666 99999999999
Q ss_pred cCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeC
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHN 414 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~ 414 (430)
+.--.|++|.+--+ .||.+. .. .-....++|++.|..++| +.++++|.|.
T Consensus 247 gFTpDVkVwE~~f~-------------------kdG~fq-----ev----~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 247 GFTPDVKVWEPIFT-------------------KDGTFQ-----EV----KRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred cCCCCceEEEEEec-------------------cCcchh-----hh----hhhheeccchhheeeeeeCCCcceeEEEec
Confidence 99889999986411 111110 00 000112678999999999 4788999999
Q ss_pred CCeEEEEEec
Q 014104 415 SKYIRLWKFN 424 (430)
Q Consensus 415 Dg~v~vw~~~ 424 (430)
||++||||.+
T Consensus 299 DG~wriwdtd 308 (420)
T KOG2096|consen 299 DGKWRIWDTD 308 (420)
T ss_pred CCcEEEeecc
Confidence 9999999975
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=151.72 Aligned_cols=251 Identities=14% Similarity=0.187 Sum_probs=187.6
Q ss_pred EEeccccceeEEEecC--CeEEEEeCCCeEEEEecCC--------CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeE
Q 014104 107 QWKAHSVGVDQCRMKR--GLILTGVGDKVMRLWSLEG--------YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~--~~l~s~~~dg~i~iwd~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
++..|.+.|+.++|++ ..|++++.||++++|+++. -+.+.+|.+| +.+.++++..++..++ ++.||.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 7889999999999954 3999999999999999932 2567788887 5567799999999999 9999999
Q ss_pred EEEEcCCCc------------ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--CCCCeEEEE
Q 014104 175 CIWRRNGLR------------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--HCAPVTSLS 240 (430)
Q Consensus 175 ~vwd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~~~ 240 (430)
+.|++.... ..+.++.+. +..+.++.....|++++.||+++.|+.....+ .++.. ..+--.+++
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccc-eeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999765322 122233322 23355555566699999999999999865544 33322 123334566
Q ss_pred ecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC------CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee
Q 014104 241 LSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD------CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 241 ~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
+-.. ...++...-+.-.+.+......+..+.... ...+.-+..+|.+.+.+++..|+.|+++|..+++++..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 5432 233333344444555666665555554311 12567788899999999999999999999999999999
Q ss_pred eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc
Q 014104 313 TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
...|...+++++ +.|+|.+|++++.|+.+++|.+....++.....|.
T Consensus 527 ~~a~~~svtsla-i~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 527 MVAHKDSVTSLA-IDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eeeccceeccee-ecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 999999999999 99999999999999999999998888877766554
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-15 Score=138.90 Aligned_cols=265 Identities=11% Similarity=0.134 Sum_probs=167.6
Q ss_pred EEEeCCCeEEEEecCC-Ce--eEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEEEEcCC-Cccc-cc-CCCCceeeee
Q 014104 126 LTGVGDKVMRLWSLEG-YK--CVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG-LRSV-FP-SREGTFMKGL 197 (430)
Q Consensus 126 ~s~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~-~~~~-~~-~~~~~~~~~~ 197 (430)
++...|+.|.+||+.+ ++ .+..+........++++|+++.|+ + ..++.|.+|+++. +... .. .........+
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i 85 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHI 85 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEE
Confidence 4446789999999964 33 556666556677799999999887 3 3478899999973 3221 11 1111122345
Q ss_pred EEEEcCCceEEEe-cCCeEEEEECCC-C---eeeEEeecCCCCeEEEEecCC-CEEE-EEeCCCeEEEEeCCCCceeE--
Q 014104 198 CMRYFDPEAVVGC-EDGTARVFDMYS-R---KCSQIIRMHCAPVTSLSLSED-QLII-SGSSLGSIAISGLSSDQRVA-- 268 (430)
Q Consensus 198 ~~~~~~~~l~~~~-~dg~i~vwd~~~-~---~~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~dg~i~vwd~~~~~~~~-- 268 (430)
.+.+.+..+++++ .++.|.+|++.+ + +.+..+. +......++++|+ ++++ +...++.|.+||+.+...+.
T Consensus 86 ~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 86 STDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 5666677766665 488999999864 2 2233332 2234667888976 5554 55567999999997633221
Q ss_pred ---EEecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCC--C--ceeeeeecCC------CceEEEEEeeCCCCeEE
Q 014104 269 ---TLRSTDCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRT--M--KSLWETRISP------NVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 269 ---~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~--~~~~~~~~~~------~~v~~l~~~s~~~~~l~ 334 (430)
............++|+|+|++++++.. ++.|.+|++.. + +.+..+..+. .....+. ++|++++++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~-~~pdg~~ly 243 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH-ITPDGRHLY 243 (330)
T ss_pred CCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE-ECCCCCEEE
Confidence 111112345788999999999988876 89999999973 2 2233332211 1223576 899999999
Q ss_pred EEc-CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEE
Q 014104 335 VGG-IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVT 411 (430)
Q Consensus 335 s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t 411 (430)
++. .++.|.+|++.......++..+.. .+ .....+++ ||++|++
T Consensus 244 v~~~~~~~I~v~~i~~~~~~~~~~~~~~-------------------------------~~--~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 244 ACDRTASLISVFSVSEDGSVLSFEGHQP-------------------------------TE--TQPRGFNIDHSGKYLIA 290 (330)
T ss_pred EecCCCCeEEEEEEeCCCCeEEEeEEEe-------------------------------cc--ccCCceEECCCCCEEEE
Confidence 886 478999999965432222221111 00 01223444 6888776
Q ss_pred eeC-CCeEEEEEecC
Q 014104 412 THN-SKYIRLWKFNY 425 (430)
Q Consensus 412 ~~~-Dg~v~vw~~~~ 425 (430)
++. +++|.+|+++.
T Consensus 291 a~~~~~~v~v~~~~~ 305 (330)
T PRK11028 291 AGQKSHHISVYEIDG 305 (330)
T ss_pred EEccCCcEEEEEEcC
Confidence 664 89999998853
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=139.52 Aligned_cols=181 Identities=15% Similarity=0.237 Sum_probs=134.4
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEec--CCCEEE-EEeCCeEEEEEcCCCccc----ccCCCCceee
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDF--DESKIV-GLIGTRICIWRRNGLRSV----FPSREGTFMK 195 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~-~~~~~~i~vwd~~~~~~~----~~~~~~~~~~ 195 (430)
.+|++-..|.|++||..+++.+..++++ .....+.|.. .+..+. ++.||+|++||+...... +..+.+. .
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~--~ 119 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT--P 119 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC--c
Confidence 6888889999999999999999999986 4455577766 344555 899999999999876532 2222222 2
Q ss_pred eeEEEE--cCCceEEEe----cCCeEEEEECCCCee-eEE-eecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCc
Q 014104 196 GLCMRY--FDPEAVVGC----EDGTARVFDMYSRKC-SQI-IRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 196 ~~~~~~--~~~~l~~~~----~dg~i~vwd~~~~~~-~~~-~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~ 265 (430)
..|+.. .+..+++|. .+-.|.+||++..+. +.. ...|.+.|+++.|+|. +++++||.||-|.+||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 344443 333355554 367899999987765 443 4579999999999975 899999999999999987542
Q ss_pred ----eeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCc
Q 014104 266 ----RVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 266 ----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~ 308 (430)
.+..+. +...|.++.|..++ +.+.+-+..++..+|++..+.
T Consensus 200 EeDaL~~viN--~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 200 EEDALLHVIN--HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred chhhHHHhhc--ccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 234444 56679999998776 357777888889999987664
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=140.72 Aligned_cols=297 Identities=11% Similarity=0.112 Sum_probs=198.3
Q ss_pred EEeccccceeEEEecC-C-eEEEEeCCCeEEEEecCC------CeeEEeeecC--CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 107 QWKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEG------YKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~------~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
-+.+|.+.|+++.|++ + +|++|+.|..+++|+++. .+++.....| ..+.+++|...+..++ +..+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 4678999999999954 4 999999999999999763 2444444444 3466688888888888 88899999
Q ss_pred EEEcCCCcccccC-CCCc--eeeeeEEEEcCCceEEEecCCeEEEEECCCCe-ee--EEeecCCCCeEEEEecCC--CEE
Q 014104 176 IWRRNGLRSVFPS-REGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CS--QIIRMHCAPVTSLSLSED--QLI 247 (430)
Q Consensus 176 vwd~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~--~~~~~~~~~i~~~~~~~~--~~l 247 (430)
.-|+++.+.+... +... .+..+...+..+.+++.+.++.|.+||.+..+ .+ ...........++.|+|. .+|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li 210 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALI 210 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeE
Confidence 9999998865433 2222 23344455556669999999999999997654 22 222234456788999985 689
Q ss_pred EEEeCCCeEEEEeCCCCce-eEEEec--CC---CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce-eeeeecCC---
Q 014104 248 ISGSSLGSIAISGLSSDQR-VATLRS--TD---CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS-LWETRISP--- 317 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~-~~~~~~--~~---~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~--- 317 (430)
++++..+-+-+||++..+. +....+ .. ...-+.+.|+|+|+.|.+--....-.+||+-+.++ +..+....
T Consensus 211 ~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY 290 (609)
T KOG4227|consen 211 LVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY 290 (609)
T ss_pred EeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc
Confidence 9999999999999985432 111111 01 11236789999999888765555566788876443 33332111
Q ss_pred ---CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE--EeccCcceeeeccCCceEEEeecccccCCcc---cc
Q 014104 318 ---NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC--VMDIGSASSSSNKVSGVIERNEGRRLSAGCC---ID 389 (430)
Q Consensus 318 ---~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~---~~ 389 (430)
..+.+++ |- +...+++|+.+-.|++|.+.......-+ .+|.. ...+...- -.
T Consensus 291 ~N~~T~KS~~-F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~------------------~~~~~~~~i~~~~ 350 (609)
T KOG4227|consen 291 CNIKTIKSMT-FI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDE------------------EEMPSEIFIEKEL 350 (609)
T ss_pred eeeeeeeeee-ee-cceeeeccCcccceEEEecCCCccccCccccCcch------------------hhCchhheeccee
Confidence 2355565 53 4456999999999999998743222111 11111 00111100 11
Q ss_pred cCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEe
Q 014104 390 RIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~ 423 (430)
....+|++.++.|.|+ ..+|++.|....+++|.-
T Consensus 351 ~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 351 TVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred EEEecccccccceeecCCcceEeccchhhheecccc
Confidence 2247899999999995 667889999999999963
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-17 Score=142.61 Aligned_cols=242 Identities=17% Similarity=0.155 Sum_probs=176.0
Q ss_pred eEEEEeccccceeEEEec-CC--eEEEEeCCCeEEEEecCCCeeEEeeec--C-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSLEGYKCVEEYSL--P-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~--~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
.+..+..|.++|.++.|+ .+ .+++.|.||+|+.=|++++..-..+.. . .....+.|+.+...++ +..=|.+.+
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~ 305 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNV 305 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEE
Confidence 466788999999999993 33 999999999999999987644333332 2 1223366666666555 666679999
Q ss_pred EEcCCCcc---cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCe----eeEEeecCCCCeEEEEecCC-CEE
Q 014104 177 WRRNGLRS---VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 177 wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~-~~l 247 (430)
||..++.. .+..+.. .+..+.+.+..+. +++++.|++.+|||++.-. ++.....|...|.++.|+|. ..+
T Consensus 306 iD~R~~~s~~~~~~lh~k-KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl 384 (498)
T KOG4328|consen 306 IDLRTDGSEYENLRLHKK-KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTL 384 (498)
T ss_pred EEeecCCccchhhhhhhc-ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCce
Confidence 99987654 2333444 3344556665565 9999999999999997532 22333469999999999985 569
Q ss_pred EEEeCCCeEEEEeCC----CCceeEEEecCCCC------CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC
Q 014104 248 ISGSSLGSIAISGLS----SDQRVATLRSTDCT------GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
++.+.|..|+|||.. .-.+...+. |.. ......|.|+..++++|-.-..|-|+|-..++.+.++....
T Consensus 385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~--Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~ 462 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDSSCISAKDEPLGTIP--HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE 462 (498)
T ss_pred EeeccCCceEEeecccccccCCccceee--ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence 999999999999983 333344444 222 34456899999999999999999999999888787755443
Q ss_pred -CceEEEEEeeCCCCeEEEE-cCCCeEEEEEcC
Q 014104 318 -NVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQN 348 (430)
Q Consensus 318 -~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~ 348 (430)
..|.++..++|-+..+++| +..|.|+||--+
T Consensus 463 ~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 463 SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccccccceeecccccceeccCCccceEEEEecC
Confidence 4777777799988845554 577899998654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=134.30 Aligned_cols=233 Identities=16% Similarity=0.184 Sum_probs=166.5
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccc--cCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEE
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
..+.++.|..+++.+.+...|.+.+|++.+.+... ....... +..+.... ..+.+-+.|+.+.+|++..+..+..
T Consensus 15 ~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~--it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i 92 (323)
T KOG0322|consen 15 SSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLF--ITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISI 92 (323)
T ss_pred chheehhhccchhhhcccccceEEEEEeecCccchhhhhhccce--eeceeecCCcchhhcCCCceEEEEEccCcceEEE
Confidence 55667778778776669999999999999887543 3233322 23333322 3488889999999998865321110
Q ss_pred -------------------------e----------------------------ecCCCCeEEEEecC--C--CEEEEEe
Q 014104 229 -------------------------I----------------------------RMHCAPVTSLSLSE--D--QLIISGS 251 (430)
Q Consensus 229 -------------------------~----------------------------~~~~~~i~~~~~~~--~--~~l~~~~ 251 (430)
+ .+..+.+++..+.- + -++++|.
T Consensus 93 ~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGy 172 (323)
T KOG0322|consen 93 HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGY 172 (323)
T ss_pred eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEec
Confidence 0 01234566666542 2 2677788
Q ss_pred CCCeEEEEeCCCCceeEEEec---------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--ce--eeeeecCCC
Q 014104 252 SLGSIAISGLSSDQRVATLRS---------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM--KS--LWETRISPN 318 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~--~~~~~~~~~ 318 (430)
++|.+.+||+.++..+-.++. .|..+|.++.|.+.-..=++|+.+..+..|++... .+ ..++....-
T Consensus 173 Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp 252 (323)
T KOG0322|consen 173 ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP 252 (323)
T ss_pred cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCC
Confidence 999999999998844333321 37789999999887666778888888999988642 22 223333345
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
.|..+. +-||++.++|++.|+.|+||+.++..++..++.|. +.
T Consensus 253 Gv~gvr-IRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHs------------------------------------ag 295 (323)
T KOG0322|consen 253 GVSGVR-IRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHS------------------------------------AG 295 (323)
T ss_pred CccceE-EccCCcEEeecccCCcEEEEEeccCCchhhhhhhh------------------------------------cc
Confidence 677787 88999999999999999999999999999887654 47
Q ss_pred eeEEEEc--CeEEEEeeCCCeEEEEEe
Q 014104 399 ITCLAVG--MKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 399 v~~v~~~--~~~l~t~~~Dg~v~vw~~ 423 (430)
|++++|+ .+.+++||.|++|.+|++
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 8888883 467999999999999986
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-16 Score=125.03 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=142.9
Q ss_pred ceeEEEEecCCCEEE-EEeCCeEEEEEcCCC---------cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC
Q 014104 153 AASLVDFDFDESKIV-GLIGTRICIWRRNGL---------RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 222 (430)
.+..-+++|.+++++ +..+|.|.+..++.- +........+...+..+.+.+..|++|+. |.|+-|..+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 344567889999988 888999999987641 11222223333444566666555666665 9999987543
Q ss_pred Cee------eEE--eecC-----CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC
Q 014104 223 RKC------SQI--IRMH-----CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR 288 (430)
Q Consensus 223 ~~~------~~~--~~~~-----~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 288 (430)
... +.. ...| -..|++|...|. +.++.++.|+.++-||+++|+..+.+++ |...|.++.--....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-HtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG-HTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-CcceeeeeeecccCc
Confidence 211 111 1112 236788888875 6666777899999999999999999998 899999998844455
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeeeecC---------C-CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 289 LVFAGTTAGYASCWDLRTMKSLWETRIS---------P-NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 289 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------~-~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.+++|++||++++||.++++.+..+... . ..|-+++ -+..+|++|+ ...+.+|++++.++...+..
T Consensus 170 qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala---~~edWlvCGg-Gp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 170 QILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA---VNEDWLVCGG-GPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred ceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe---ccCceEEecC-CCceeEEeccCCCceEEEec
Confidence 6889999999999999999888765432 2 3455555 4667888776 45799999999998888764
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-18 Score=148.57 Aligned_cols=201 Identities=14% Similarity=0.192 Sum_probs=168.9
Q ss_pred ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
+...+.++.+|+.++ ++..|.+..+|..++...+...-...+..+.+......++++ ....++|||- .|..++.++.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHClk~ 208 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHCLKR 208 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEeehhh
Confidence 456688999999988 999999999999998876665555444444444444445544 4568999994 7888888885
Q ss_pred CCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 014104 232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
| ..|..+.|-|. -+|++++..|.++.-|+.+|+.+..+.. ..+.+..|+-+|-...+-+|...|+|.+|.....+++
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred c-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 5 57889999998 4677788899999999999999999887 6678999999999999999999999999999999999
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
..+..|.++|.+++ +.++|+|++|.+.|..++|||+++-..+.++..
T Consensus 287 vKiLcH~g~V~siA-v~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 287 VKILCHRGPVSSIA-VDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred HHHHhcCCCcceEE-ECCCCcEEeecccccceeEeeeccccccceeec
Confidence 99999999999999 999999999999999999999998776666554
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-16 Score=144.61 Aligned_cols=256 Identities=15% Similarity=0.141 Sum_probs=181.0
Q ss_pred CCeEEEEecCCC-eeEEeeecCCceeEEEEec-CCCEEE-EEeCCeEEEEEcCCCcccc-----cCCCCcee--eeeEEE
Q 014104 131 DKVMRLWSLEGY-KCVEEYSLPNAASLVDFDF-DESKIV-GLIGTRICIWRRNGLRSVF-----PSREGTFM--KGLCMR 200 (430)
Q Consensus 131 dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~~~~~~-----~~~~~~~~--~~~~~~ 200 (430)
++.+.+|++... .....+.....+.++.|+| ++..++ |+.+|+|.+||+..+.... .....+.. ..+.+.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 358999999875 5667777888899999998 555666 7889999999998766421 11112222 223333
Q ss_pred EcCC--ceEEEecCCeEEEEECCCCee-eE-----Eee------cCCCCeEEEEecCC--CEEEEEeCCCeEEEEeC---
Q 014104 201 YFDP--EAVVGCEDGTARVFDMYSRKC-SQ-----IIR------MHCAPVTSLSLSED--QLIISGSSLGSIAISGL--- 261 (430)
Q Consensus 201 ~~~~--~l~~~~~dg~i~vwd~~~~~~-~~-----~~~------~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~--- 261 (430)
.... .+++++.||.|..|+++--.. .. ... .....+++++|.+. ..++.|+++|.|..=+-
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3322 399999999999998764321 11 111 11236789999864 68999999999887332
Q ss_pred CCCc-----eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeeeeecCCCceEEEEEeeCCCC-eEE
Q 014104 262 SSDQ-----RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR-TMKSLWETRISPNVVYSLQHLQNDTS-TLV 334 (430)
Q Consensus 262 ~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~ 334 (430)
+.+. ....+. .|.++|+++.++|-+..++..+.|.+++||... ...++..+..+...|++++ |||... .++
T Consensus 381 ~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~va-WSptrpavF~ 458 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFI-THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVA-WSPTRPAVFA 458 (555)
T ss_pred ccccccccccccccc-ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeE-EcCcCceEEE
Confidence 2222 111222 377899999999988766655559999999988 7788888888888899999 998765 667
Q ss_pred EEcCCCeEEEEEcCCC--ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE
Q 014104 335 VGGIDGVLRVLDQNTG--EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV 410 (430)
Q Consensus 335 s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~ 410 (430)
++..||.|.+||+... .++.+...+ ....+.+.+ +|+.|+
T Consensus 459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~------------------------------------~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 459 TVDGDGNLDIWDLLQDDEEPVLSQKVC------------------------------------SPALTRVRWSPNGKLLA 502 (555)
T ss_pred EEcCCCceehhhhhccccCCccccccc------------------------------------ccccceeecCCCCcEEE
Confidence 7888999999999743 233333321 234555666 478899
Q ss_pred EeeCCCeEEEEEec
Q 014104 411 TTHNSKYIRLWKFN 424 (430)
Q Consensus 411 t~~~Dg~v~vw~~~ 424 (430)
.|+..|++.+|++.
T Consensus 503 vGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 503 VGDANGTTHILKLS 516 (555)
T ss_pred EecCCCcEEEEEcC
Confidence 99999999999985
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-14 Score=134.92 Aligned_cols=285 Identities=24% Similarity=0.344 Sum_probs=208.5
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeC-CCeEEEEecCCCeeEEeeecC-CceeEEEEecCCC-EEEE-EeCCeEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDES-KIVG-LIGTRIC 175 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~-~l~~-~~~~~i~ 175 (430)
......+.+|...|.++.| +++ .+++++. |+.+++|+...+..+..+..+ ..+..+++++++. .+++ +.|+.+.
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 4677889999999999999 555 7888875 999999999988888888875 5577799999988 4444 7899999
Q ss_pred EEEcCCCcccccCCCCceee-eeEEEEcCCceEEEecCCeEEEEECCCCee-eEEeecCCCCeEEEEecC-CCEEEEEeC
Q 014104 176 IWRRNGLRSVFPSREGTFMK-GLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSE-DQLIISGSS 252 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~~~-~~~l~~~~~ 252 (430)
+||...+........++... ...+.+.+..+++++.|+.+++||+..... +..+..|...+.++.+.| +..+++++.
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred EEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 99888555332122222111 225666666688999999999999987664 445567889999999998 467777888
Q ss_pred CCeEEEEeCCCCceeEEEe-cCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 253 LGSIAISGLSSDQRVATLR-STDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
|+.+.+||..+........ ..|...+..+.+.+++..++.+ ..|+.+.+|+............. ..+..+. +++ .
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~-~ 381 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVS-FSP-D 381 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEE-ECC-C
Confidence 8999999998887766665 2266679999994332556555 67889999999887733333322 2277787 666 4
Q ss_pred CeEEE-EcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 331 STLVV-GGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 331 ~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
..++. +..++.+.+|+............+. ..+....+ ++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~ 425 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT------------------------------------SRVTSLDFSPDGK 425 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCC------------------------------------CcEEEEEECCCCc
Confidence 44444 6889999999999877766655321 24444444 467
Q ss_pred EEEEeeCCCeEEEEEecC
Q 014104 408 KVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~~~~ 425 (430)
.+++++.++.+++|+...
T Consensus 426 ~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 426 SLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EEEEecCCCcEEEEeccC
Confidence 788889999999999865
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.3e-16 Score=126.67 Aligned_cols=196 Identities=12% Similarity=0.226 Sum_probs=142.2
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCC----eeeEEeecCCCCeEEEEec-C--CCEEEEEeCCCeEEEEeCCCC--
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSLSLS-E--DQLIISGSSLGSIAISGLSSD-- 264 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~~~~-~--~~~l~~~~~dg~i~vwd~~~~-- 264 (430)
+..+.+.+.|..+++++.|++++|||.... .+....+.|.+.|..+.|. | ++.+++++.|+++.||.-...
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccc
Confidence 445666677888999999999999996543 4566778999999999998 5 489999999999999975211
Q ss_pred -------ceeEEEecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCC------ceeeeee-------cCCCceEE
Q 014104 265 -------QRVATLRSTDCTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTM------KSLWETR-------ISPNVVYS 322 (430)
Q Consensus 265 -------~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~------~~~~~~~-------~~~~~v~~ 322 (430)
....++.. ....|+.+.|.|. |-.|++++.||.++||+.... .+..++. .+..+..|
T Consensus 96 ~~~~~~Wv~~ttl~D-srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C 174 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVD-SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC 174 (361)
T ss_pred ccccceeEEEEEeec-CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence 12334443 5668999999985 568999999999999987542 2223333 34566778
Q ss_pred EEEeeCC---CCeEEEEcCC-----CeEEEEEcCCCc-eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCC
Q 014104 323 LQHLQND---TSTLVVGGID-----GVLRVLDQNTGE-VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 323 l~~~s~~---~~~l~s~~~d-----g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
+. |+|. .++|+.|+.+ +.++||....+. ...... .+ .
T Consensus 175 vs-Wn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva--------------------------------~L-~ 220 (361)
T KOG2445|consen 175 VS-WNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA--------------------------------EL-P 220 (361)
T ss_pred Ee-eccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh--------------------------------hc-C
Confidence 87 6654 3578888765 478888765432 222111 12 2
Q ss_pred CCCCCeeEEEEc------CeEEEEeeCCCeEEEEEecC
Q 014104 394 TIRPPITCLAVG------MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 394 ~h~~~v~~v~~~------~~~l~t~~~Dg~v~vw~~~~ 425 (430)
+|..+|+.++|. -..|++|+.|| |+||.+..
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 578899999993 34689999999 99999974
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.5e-17 Score=134.99 Aligned_cols=224 Identities=16% Similarity=0.223 Sum_probs=155.6
Q ss_pred cccceeEEEe----cC-C-eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEEEEeCCeEEEEEcCCCc
Q 014104 111 HSVGVDQCRM----KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (430)
Q Consensus 111 h~~~v~~~~~----~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 183 (430)
|...-..+++ .. + ++|.|+.-|.|+|.|+.++++...+.+|+. +.-+.+.|+...
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~q------------------ 149 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQ------------------ 149 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCc------------------
Confidence 5555666665 22 3 888888889999999988888888877633 333555544322
Q ss_pred ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecC-CCEEEEEeCCCeEEEE
Q 014104 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSE-DQLIISGSSLGSIAIS 259 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vw 259 (430)
.+++++.|.+|++|++++..++..+ .+|.+.|.++.|+. +..+++++.|.++++|
T Consensus 150 ---------------------lvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W 208 (385)
T KOG1034|consen 150 ---------------------LVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLW 208 (385)
T ss_pred ---------------------EEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEE
Confidence 2889999999999999999998776 57999999999995 4899999999999999
Q ss_pred eCCCCceeEEE---------------------------ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC-CCCce--
Q 014104 260 GLSSDQRVATL---------------------------RSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL-RTMKS-- 309 (430)
Q Consensus 260 d~~~~~~~~~~---------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~-- 309 (430)
++...+....+ ..-|...|.|+.| -|+++++=+-++.|..|.. +-.+.
T Consensus 209 ~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~ 286 (385)
T KOG1034|consen 209 RLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIH 286 (385)
T ss_pred ecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhh
Confidence 99843221111 1124456666666 4688998888899999987 22221
Q ss_pred -----------eeeeecCCCceEEEE-EeeCCCCeEEEEcCCCeEEEEEcCCCceE--EEEEe--ccCcceeeeccCCce
Q 014104 310 -----------LWETRISPNVVYSLQ-HLQNDTSTLVVGGIDGVLRVLDQNTGEVL--SRCVM--DIGSASSSSNKVSGV 373 (430)
Q Consensus 310 -----------~~~~~~~~~~v~~l~-~~s~~~~~l~s~~~dg~i~vwd~~~~~~~--~~~~~--~~~~~~~~~~s~d~~ 373 (430)
+.++......++-+. .|.|-++.||.|...|.|++||+++.++. .++.. ....+...++|.||.
T Consensus 287 ~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 287 NVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 223333334455554 15666789999999999999999976652 12221 122345667777776
Q ss_pred EE
Q 014104 374 IE 375 (430)
Q Consensus 374 v~ 375 (430)
+.
T Consensus 367 ~l 368 (385)
T KOG1034|consen 367 IL 368 (385)
T ss_pred EE
Confidence 54
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=150.54 Aligned_cols=235 Identities=19% Similarity=0.235 Sum_probs=169.7
Q ss_pred cceeEEEe-c--CC-eEEEEeCCCeEEEEecC-C----CeeEEeee-------c-CCceeEEEEecCCCEEE-EEeCCeE
Q 014104 113 VGVDQCRM-K--RG-LILTGVGDKVMRLWSLE-G----YKCVEEYS-------L-PNAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 113 ~~v~~~~~-~--~~-~l~s~~~dg~i~iwd~~-~----~~~~~~~~-------~-~~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
..|+.+.+ + |. ++++|+.||.||||+-. + .+.+..+. + .+....+.|.....+|+ ++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 46888888 2 22 99999999999999632 2 23332222 1 12335567777777777 5556889
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEEc---CCceEEEecCCeEEEEECCCCe---eeEEeecCCCC--eEEEEecC-C-
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRYF---DPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAP--VTSLSLSE-D- 244 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~--i~~~~~~~-~- 244 (430)
+|||............+....+.+++.+ ++.+++|..||.|++||.+... .+...+.|+.. |..+.+.+ +
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999998876554444443334444443 3449999999999999987543 56777888887 99999986 4
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeE--EEecCC--CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC----
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVA--TLRSTD--CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS---- 316 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~---- 316 (430)
..+++|+.||.|++||++...... ++..+. .+..+++..++....+|+|+. +.|+||++. |+.+..++.+
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccc
Confidence 579999999999999999742221 222211 224999999999999999998 899999997 4444443322
Q ss_pred ---CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 317 ---PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 317 ---~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
.+.+.+++ |+|..-++++|+.|.+|.||.....
T Consensus 1348 ~q~~gs~scL~-FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLA-FHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceee-ecchhHhhhhccCCceEEEeecCCc
Confidence 25678998 9999999999999999999987644
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-16 Score=140.21 Aligned_cols=211 Identities=13% Similarity=0.194 Sum_probs=153.9
Q ss_pred EEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC---ceeeeeEEEE-------cCCceEEEecCCeEEEEECCCCeeeE
Q 014104 158 DFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG---TFMKGLCMRY-------FDPEAVVGCEDGTARVFDMYSRKCSQ 227 (430)
Q Consensus 158 ~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~l~~~~~dg~i~vwd~~~~~~~~ 227 (430)
..+-.|++|+-.....+.+|+..++..+...... .....+|-.+ .+-.+++|-.-|.|.+.|....+..+
T Consensus 130 ~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sk 209 (636)
T KOG2394|consen 130 NQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSK 209 (636)
T ss_pred cccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHH
Confidence 3444667777777788889988754322111100 0011122111 22238899999999999976532221
Q ss_pred Eee----cCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCC--------------Cce--------------eEEEecC
Q 014104 228 IIR----MHCAPVTSLSLSED--QLIISGSSLGSIAISGLSS--------------DQR--------------VATLRST 273 (430)
Q Consensus 228 ~~~----~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~--------------~~~--------------~~~~~~~ 273 (430)
.+. ..+..|+++.|-|+ ..++.+-.+|.+.++|..- +.. +..+.-
T Consensus 210 lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~- 288 (636)
T KOG2394|consen 210 LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI- 288 (636)
T ss_pred hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEe-
Confidence 111 12468999999975 6888889999999997531 111 111111
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 274 DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
..+.|...+|+|||++||+.+.||.++|||..+.+++..++..-+...|++ |||||+||++|++|..|.||.+..++.+
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvc-WSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVC-WSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred ccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEE-EcCCccEEEecCCcceEEEEEeccceEE
Confidence 224788999999999999999999999999999998888887788999998 9999999999999999999999999999
Q ss_pred EEEEeccCcceeeeccC
Q 014104 354 SRCVMDIGSASSSSNKV 370 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~ 370 (430)
..-.+|...+..+++.+
T Consensus 368 ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EeccccccceeeEeecc
Confidence 99999999988888874
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=139.74 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=166.5
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN 284 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 284 (430)
++.++.||.+.+.+ +.++..+.+..|.+.+.+-.|+|+ .-++++++||.|++|. ++|-...++.. ...+|+|++|.
T Consensus 78 ~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q-~~~~v~c~~W~ 154 (737)
T KOG1524|consen 78 LLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQ-NEESIRCARWA 154 (737)
T ss_pred EEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhh-cCceeEEEEEC
Confidence 88899999999988 467888889999999999999976 6799999999999999 56666555544 56699999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcce
Q 014104 285 PCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSAS 364 (430)
Q Consensus 285 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 364 (430)
|+.+.++-+ ..+.+.|=.+.....+...+.|.+-|.++. |++....+++|+.|-..++||-. |..+.+-..|...++
T Consensus 155 p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~-W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 155 PNSNSIVFC-QGGHISIKPLAANSKIIRWRAHDGLVLSLS-WSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCceEEe-cCCeEEEeecccccceeEEeccCcEEEEee-cCccccceeecCCceeEEeeccc-CcccccCChhcccee
Confidence 998766554 345688878887777788999999999999 99999999999999999999976 888888889999999
Q ss_pred eeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEE
Q 014104 365 SSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRL 420 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~v 420 (430)
.+++.+|....++..... ++.+...+.|..++| ||..++.|...|.|.+
T Consensus 232 Sva~npd~~~~v~S~nt~-------R~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 232 SVAFNPEKDYLLWSYNTA-------RFSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeccccceeeeeeeee-------eecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 999999954444433322 133445678999999 7999999999988754
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-16 Score=139.64 Aligned_cols=266 Identities=12% Similarity=0.153 Sum_probs=194.0
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
.|..++| ||| .|+.+. +..+.+||.+.|..+.++++| +.+.+++++.||+.++ |+.|..|.+|+..-.-.+...|
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH 92 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH 92 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence 7889999 788 444433 347999999999999999987 6788899999999999 8999999999987655555555
Q ss_pred CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeE
Q 014104 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVA 268 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~ 268 (430)
...+ ..+.+.+....+++++-+ ..-+|...... +...+ ....+.+++|.. +.+++.|-.+|+|.+-+- +++...
T Consensus 93 ~D~I-QCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~ 167 (1081)
T KOG1538|consen 93 NDAI-QCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKV 167 (1081)
T ss_pred CCee-eEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcce
Confidence 4442 333334444457777764 57788865433 22222 245788889985 489999999999999874 455544
Q ss_pred EEe--cCCCCCeEEEEEecCC-----CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 269 TLR--STDCTGIKTLCYNPCS-----RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 269 ~~~--~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
.+. ++...+|.+++|+|+. ..+++.....++.+|.+. |+.+..-+.-.-...|+. +-++|.+++.|+.|+.
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Cis-Yf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCIS-YFTNGEYILLGGSDKQ 245 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhhe-eccCCcEEEEccCCCc
Confidence 443 3356699999999964 478888888888888876 555542222223345677 6689999999999999
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEE
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIR 419 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~ 419 (430)
+++|-. .|-.+.++...+ ..|+.|+. ++++++.|+.||+|-
T Consensus 246 L~~fTR-~GvrLGTvg~~D------------------------------------~WIWtV~~~PNsQ~v~~GCqDGTiA 288 (1081)
T KOG1538|consen 246 LSLFTR-DGVRLGTVGEQD------------------------------------SWIWTVQAKPNSQYVVVGCQDGTIA 288 (1081)
T ss_pred eEEEee-cCeEEeeccccc------------------------------------eeEEEEEEccCCceEEEEEccCeee
Confidence 999974 476666664322 37888777 688899999999998
Q ss_pred EEEec
Q 014104 420 LWKFN 424 (430)
Q Consensus 420 vw~~~ 424 (430)
-|++-
T Consensus 289 CyNl~ 293 (1081)
T KOG1538|consen 289 CYNLI 293 (1081)
T ss_pred hhhhH
Confidence 77764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.2e-17 Score=142.82 Aligned_cols=192 Identities=18% Similarity=0.298 Sum_probs=143.1
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCC--------CeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCC---
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYS--------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD--- 264 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~--------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~--- 264 (430)
..+.+..+.+++++.||++.+|+++. -+++.++.+|.++|.|+++.++ +.+++|+.||+|+.|++...
T Consensus 300 l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp 379 (577)
T KOG0642|consen 300 LAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDP 379 (577)
T ss_pred hhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCc
Confidence 33444556699999999999999932 2478899999999999999865 89999999999999965421
Q ss_pred -------ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce--eeeeecC-------------------
Q 014104 265 -------QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS--LWETRIS------------------- 316 (430)
Q Consensus 265 -------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~------------------- 316 (430)
.....+.+ |.+.|..+++++....|++++.||++++|+.....+ ...-..|
T Consensus 380 ~ds~dp~vl~~~l~G-htdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s 458 (577)
T KOG0642|consen 380 DDSYDPSVLSGTLLG-HTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLAS 458 (577)
T ss_pred ccccCcchhccceec-cccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhh
Confidence 12344555 888999999999999999999999999999865433 1000000
Q ss_pred ------------------------------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceee
Q 014104 317 ------------------------------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSS 366 (430)
Q Consensus 317 ------------------------------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 366 (430)
...+.-+. ..|.+...+++..|+.|+++|..+++++.....|
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vV-s~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~------- 530 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVV-SHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH------- 530 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEE-ecCCCCeeEecccCCceecccccccccchheeec-------
Confidence 01133333 5566666677777777777777777776666554
Q ss_pred eccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 367 SNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 367 ~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...++++++ +|.+|++++.||.|++|.++..
T Consensus 531 -----------------------------~~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 531 -----------------------------KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred -----------------------------cceecceeecCCCceEEeecCCceeehhhccch
Confidence 448899988 5889999999999999998643
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=153.30 Aligned_cols=226 Identities=18% Similarity=0.257 Sum_probs=165.2
Q ss_pred EEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 105 IDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
++.|.||.++|+|+.|+ .| ++++|+.|..++||..+++.++....+|.+. .-++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-------------------- 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-------------------- 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch--------------------
Confidence 44678999999999995 44 9999999999999999999999988887432 2233222
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGL 261 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~ 261 (430)
..-.+++++.|..|++|-+.++.++..+.+|++.|++++|+|-. +.+.||++++||.
T Consensus 243 --------------------~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 243 --------------------NNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDA 299 (1113)
T ss_pred --------------------hhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccc
Confidence 22237889999999999999999999999999999999999853 7789999999998
Q ss_pred CCCceeEE--------------Eec----------C-----CCCCeEEEEEecCCCEE-----------EEEeCCCeEEE
Q 014104 262 SSDQRVAT--------------LRS----------T-----DCTGIKTLCYNPCSRLV-----------FAGTTAGYASC 301 (430)
Q Consensus 262 ~~~~~~~~--------------~~~----------~-----~~~~v~~~~~~~~~~~l-----------~~~~~dg~i~i 301 (430)
+-.-.+.. +.. . ....+.++++..++-.+ +++-.+-.+++
T Consensus 300 r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 300 RLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred cccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeee
Confidence 71111000 000 0 00012222222222222 23334456888
Q ss_pred EeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceE
Q 014104 302 WDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVI 374 (430)
Q Consensus 302 ~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v 374 (430)
|++.++.+++.+.+|...++.+. ++|-+. ...+++.||...|||+-.|.+++.+........-..+|+||+-
T Consensus 380 wnl~~g~l~H~l~ghsd~~yvLd-~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts 452 (1113)
T KOG0644|consen 380 WNLYTGQLLHNLMGHSDEVYVLD-VHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTS 452 (1113)
T ss_pred eecccchhhhhhcccccceeeee-ecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCce
Confidence 99999999999999999999999 777555 5578899999999999999988887765555555667777764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=130.58 Aligned_cols=278 Identities=16% Similarity=0.174 Sum_probs=188.3
Q ss_pred ccceeEEEecC--C-eEEEEeCCCeEEEEecCCCee---------EEeeec-CCceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 112 SVGVDQCRMKR--G-LILTGVGDKVMRLWSLEGYKC---------VEEYSL-PNAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 112 ~~~v~~~~~~~--~-~l~s~~~dg~i~iwd~~~~~~---------~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
..+|.++.|.. . .++||+.|..|++|-++.++. +..+.. +..+.++.|+|+|+.|+ ++.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45789999832 2 899999999999998754321 223333 36688899999999999 7788999999
Q ss_pred EcC--------C-----Cc--c---cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEE
Q 014104 178 RRN--------G-----LR--S---VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSL 239 (430)
Q Consensus 178 d~~--------~-----~~--~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 239 (430)
... + .+ . +...+... ...++|.+++..+++++.|.++++||+..|+.+..+..|...+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-iydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-IYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccc-hhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 877 2 10 0 11222222 2346777788889999999999999999999999999999999999
Q ss_pred EecC-CCEEEEEeCCCeEEEEeCCCCceeEEEe-----c----C---------CC----CCeEEEEEecCCCEEEEEeC-
Q 014104 240 SLSE-DQLIISGSSLGSIAISGLSSDQRVATLR-----S----T---------DC----TGIKTLCYNPCSRLVFAGTT- 295 (430)
Q Consensus 240 ~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~----~---------~~----~~v~~~~~~~~~~~l~~~~~- 295 (430)
+|.| ++++++-+.|...+.+.+...+.+.... . + |+ .-...++|+|+|.+|++...
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 9997 4888888888877777766544332221 0 0 11 12456789999999887532
Q ss_pred ---CC-----eEEEEeCCC-CceeeeeecCCCceEEEEEee------------------CCCCeEEEEcCCCeEEEEEcC
Q 014104 296 ---AG-----YASCWDLRT-MKSLWETRISPNVVYSLQHLQ------------------NDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 296 ---dg-----~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s------------------~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+ ..++|+-.. .++...+.+...+...+. ++ |-+-.++.+ ..+.|++||.+
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr-~~pVy~elrp~~~~~~~~~lpyrlvfaiA-t~~svyvydtq 329 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVR-FSPVYYELRPLSSEKFLFVLPYRLVFAIA-TKNSVYVYDTQ 329 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEE-eeeeEEEeccccccccccccccceEEEEe-ecceEEEeccc
Confidence 22 345554432 233333333322222222 11 222233444 45679999998
Q ss_pred CCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 349 TGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+.+++..... -|-..|+.++| ||..++..|.||...+--++..
T Consensus 330 ~~~P~~~v~n-----------------------------------ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 330 TLEPLAVVDN-----------------------------------IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred cccceEEEee-----------------------------------eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 8777766542 35678999999 5788999999998877666554
Q ss_pred C
Q 014104 427 D 427 (430)
Q Consensus 427 ~ 427 (430)
|
T Consensus 375 e 375 (434)
T KOG1009|consen 375 E 375 (434)
T ss_pred h
Confidence 3
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=123.12 Aligned_cols=244 Identities=14% Similarity=0.155 Sum_probs=172.4
Q ss_pred eEEEEeccccceeEEEec---C-C-eEEEEeC----CCeEEEEe--cCCCeeEEe--eecCCceeEEEEecCCC----EE
Q 014104 104 DIDQWKAHSVGVDQCRMK---R-G-LILTGVG----DKVMRLWS--LEGYKCVEE--YSLPNAASLVDFDFDES----KI 166 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~---~-~-~l~s~~~----dg~i~iwd--~~~~~~~~~--~~~~~~~~~~~~~~~~~----~l 166 (430)
.+..+..+ -+++++.|+ + + +|+.|+. ...|.|-. .++++.+.. |.++-.+.-+.|.|+.. .+
T Consensus 37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl 115 (364)
T KOG0290|consen 37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL 115 (364)
T ss_pred eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence 45555544 356777773 2 3 8888876 34565553 345555543 34455566688998764 35
Q ss_pred EEEeCCeEEEEEcCCCcc------cccC----CCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCee---eEEeecC
Q 014104 167 VGLIGTRICIWRRNGLRS------VFPS----REGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC---SQIIRMH 232 (430)
Q Consensus 167 ~~~~~~~i~vwd~~~~~~------~~~~----~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~---~~~~~~~ 232 (430)
+++.+..+++|.+...+. .+.. +.......+.|....+. +.+++-|-+..|||++++.. ...+-.|
T Consensus 116 LATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAH 195 (364)
T KOG0290|consen 116 LATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAH 195 (364)
T ss_pred hhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEec
Confidence 688888999999875321 1111 11122333444444444 88999999999999998733 4456689
Q ss_pred CCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEe-cCC-CCCeEEEEEecCC-CEEEEEeC-CCeEEEEeCCC
Q 014104 233 CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR-STD-CTGIKTLCYNPCS-RLVFAGTT-AGYASCWDLRT 306 (430)
Q Consensus 233 ~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~-~~~v~~~~~~~~~-~~l~~~~~-dg~i~i~d~~~ 306 (430)
..+|..++|..+ +.|++.+.||+|++||++..+.-..+. ... ..+...++|+++. +++|+-.. ...|.|.|++.
T Consensus 196 DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 196 DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 999999999964 799999999999999999765433332 222 3478889998754 56665444 45699999997
Q ss_pred -CceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcCC
Q 014104 307 -MKSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 307 -~~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~~ 349 (430)
..++.++++|.+.|++++ |.|. ...|++++.|..+.+||+.+
T Consensus 276 P~tpva~L~~H~a~VNgIa-WaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 276 PCTPVARLRNHQASVNGIA-WAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred CCcceehhhcCcccccceE-ecCCCCceeeecCCcceEEEEeccc
Confidence 567889999999999999 6664 56899999999999999974
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-15 Score=139.77 Aligned_cols=235 Identities=17% Similarity=0.195 Sum_probs=164.7
Q ss_pred ccceeEEEec---CCeEEEEeCCCeEEEEecCCCee--EEeee-----cCCceeEEEEecCCCE--EE-EEeCCeEEEEE
Q 014104 112 SVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKC--VEEYS-----LPNAASLVDFDFDESK--IV-GLIGTRICIWR 178 (430)
Q Consensus 112 ~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~--l~-~~~~~~i~vwd 178 (430)
...|+|+.|. ..+++.|..+|.|.+||+..+.. ...+. +...+..+.|..+... ++ ++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4578899883 33999999999999999987654 22222 2344555666554333 55 88899999998
Q ss_pred cCCCccc-----cc--------CCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCC---e-----eeEEeecCCCCe
Q 014104 179 RNGLRSV-----FP--------SREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR---K-----CSQIIRMHCAPV 236 (430)
Q Consensus 179 ~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~---~-----~~~~~~~~~~~i 236 (430)
++.-... .. .........+.+.+..+. +++|++.|.|.--+.... . ....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7743210 00 111222334455555555 999999999987433221 1 133555688999
Q ss_pred EEEEecC-C-CEEEEEeCCCeEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCC--Ccee
Q 014104 237 TSLSLSE-D-QLIISGSSLGSIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRT--MKSL 310 (430)
Q Consensus 237 ~~~~~~~-~-~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--~~~~ 310 (430)
+++.++| . ..+++++ |.+|++|... ...++..+.. +...|++++|||... .|+++..||.+.+||+.. ..++
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 9999997 2 5666666 9999999987 6666766665 566799999999875 566788899999999975 3455
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
.....+....+.+. +++.|+.|++|...|.+++|++..
T Consensus 480 ~s~~~~~~~l~~~~-~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 480 LSQKVCSPALTRVR-WSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccccccceee-cCCCCcEEEEecCCCcEEEEEcCc
Confidence 55555544444454 889999999999999999999963
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-15 Score=127.78 Aligned_cols=194 Identities=18% Similarity=0.155 Sum_probs=145.5
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec-
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS- 272 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 272 (430)
.++++..++..+++++.||++++|+..+...+.....|.+.|.++.|+|+ .++++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 45777777778999999999999998788777788889999999999987 699999998 999999999977766552
Q ss_pred CCCCCeEEEEEecCC-----CEEEEEeCCCeEEEEeCCCCce-----eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 273 TDCTGIKTLCYNPCS-----RLVFAGTTAGYASCWDLRTMKS-----LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~~-----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
..+.....+.|+.++ ..++....-+.|..||+...+- ..........|.+++ .+++|++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~-VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLA-VSDDGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEE-EcCCCcEEEEeccCCcE
Confidence 233366777888776 2333334455677777653221 111122235799999 99999999999999999
Q ss_pred EEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEE
Q 014104 343 RVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRL 420 (430)
Q Consensus 343 ~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~v 420 (430)
-|++..+-++++-.+ ..|...|+.+.| |.+++++.+.|....|
T Consensus 306 ai~~~~~lq~~~~vk-----------------------------------~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVK-----------------------------------EAHLGFVTGLTFSPDSRYLASVSSDNEAAV 350 (398)
T ss_pred EEEEeceeeeeEeeh-----------------------------------hhheeeeeeEEEcCCcCcccccccCCceeE
Confidence 999998777666554 356667788777 5677777777777777
Q ss_pred EEecC
Q 014104 421 WKFNY 425 (430)
Q Consensus 421 w~~~~ 425 (430)
-.+.-
T Consensus 351 ~~l~v 355 (398)
T KOG0771|consen 351 TKLAV 355 (398)
T ss_pred EEEee
Confidence 76654
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-15 Score=134.85 Aligned_cols=258 Identities=9% Similarity=0.038 Sum_probs=186.1
Q ss_pred EeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCC
Q 014104 146 EEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYS 222 (430)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~ 222 (430)
..+.+| +.+.+++..|.|..|+ |+.||++++|.+.+++.+........+..++|.+.+.. +++++....+.+.+..-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 345565 4567799999999999 89999999999999998877766667777888877766 44444444577777655
Q ss_pred CeeeEEeecCCCCeEEEEecCCCEEEEE----eCCCeEEEEeCCCCc-----eeEEEecCCCCCeEEEEEecCCCEEEEE
Q 014104 223 RKCSQIIRMHCAPVTSLSLSEDQLIISG----SSLGSIAISGLSSDQ-----RVATLRSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~----~~dg~i~vwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
|..+..... ...|+++ ..++.+..|.-...+ ....+. |...|..|.|+..|.+|++.
T Consensus 474 G~~~e~~~t------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~--~~k~i~~vtWHrkGDYlatV 539 (733)
T KOG0650|consen 474 GDRLEVGPT------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIK--HPKSIRQVTWHRKGDYLATV 539 (733)
T ss_pred cchhhhcch------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEe--cCCccceeeeecCCceEEEe
Confidence 532211110 0112222 234567777644211 112333 78899999999999999987
Q ss_pred eCC---CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC----------ceEEEEEecc
Q 014104 294 TTA---GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG----------EVLSRCVMDI 360 (430)
Q Consensus 294 ~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~----------~~~~~~~~~~ 360 (430)
..+ ..|.|+++...+....|+...+.|..+. |+|...+|++++ ...|++||+..+ +.+..+..|+
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~-FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp 617 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVK-FHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHP 617 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEE-ecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecC
Confidence 654 4699999987666666666668888998 999999998886 467999999743 4577888899
Q ss_pred CcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeE--EEEeeCCCeEEEEE
Q 014104 361 GSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKK--VVTTHNSKYIRLWK 422 (430)
Q Consensus 361 ~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~--l~t~~~Dg~v~vw~ 422 (430)
.+-.++.++.|+.+..++. .-+.+.......|...+++|+|++++ +++|+.||++.|+-
T Consensus 618 ~GDnli~gs~d~k~~WfDl---dlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 618 NGDNLILGSYDKKMCWFDL---DLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CCCeEEEecCCCeeEEEEc---ccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 9999999999999865443 22233444456799999999998765 89999999999874
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-17 Score=140.95 Aligned_cols=225 Identities=16% Similarity=0.162 Sum_probs=183.2
Q ss_pred eEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCce
Q 014104 116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTF 193 (430)
Q Consensus 116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~ 193 (430)
+.+.+ .+| +++.|+.-|.|..+|..++++...+...+.+..+.|-.+.++++.+....++|||-.+-+.-.......
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~~~- 211 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRHIR- 211 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhcCc-
Confidence 44556 355 899999999999999999999999998889999999999999999999999999988766322211111
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
+.-+.+.+.+-.|++++..|.++.-|+.+|+.+..+..-.+.+..|+-+|- ..+-+|...|+|.+|.....+++..+..
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc 291 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC 291 (545)
T ss_pred hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh
Confidence 223445555556999999999999999999999999888889999999985 6788899999999999999998888876
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
|.++|.++++.++|++++|.+.|..++|||+++...+.++.. ......++ +|..| +++.+....|.||.
T Consensus 292 -H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls-~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 292 -HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLS-LSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred -cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccc-ccccc--ceeeecCCeeeeeh
Confidence 999999999999999999999999999999998776666554 33455565 65443 44455566899994
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.1e-14 Score=118.42 Aligned_cols=232 Identities=15% Similarity=0.233 Sum_probs=168.6
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCc-eEEEecC------CeEEEEECCCCeeeE
Q 014104 156 LVDFDFDESKIVGLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPE-AVVGCED------GTARVFDMYSRKCSQ 227 (430)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~d------g~i~vwd~~~~~~~~ 227 (430)
.++|+.|..-++.+.+...++|+.+.-+... ..........+.+.+-.+. .++|+.+ ..|.|||-...+++.
T Consensus 10 svs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~ 89 (346)
T KOG2111|consen 10 SVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCII 89 (346)
T ss_pred EEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEE
Confidence 3778888888888888889999887643211 1111111333444444444 2344433 579999976777887
Q ss_pred EeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeEEEecCC-CCCeEEEEEecCCCEEEE-EeCCCeEEEEeC
Q 014104 228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS-SDQRVATLRSTD-CTGIKTLCYNPCSRLVFA-GTTAGYASCWDL 304 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~ 304 (430)
++. ...+|.++.+.++.+++. .++.|.||... +.+.++.+.... ..+..+++-+.+..+||. |-.-|.|.|-|+
T Consensus 90 el~-f~~~I~~V~l~r~riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 90 ELS-FNSEIKAVKLRRDRIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred EEE-eccceeeEEEcCCeEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 776 678999999987765444 36789999987 566677666422 234544444434445553 556799999999
Q ss_pred CCCce--eeeeecCCCceEEEEEeeCCCCeEEEEcCCCe-EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 305 RTMKS--LWETRISPNVVYSLQHLQNDTSTLVVGGIDGV-LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 305 ~~~~~--~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
...+. ...+.+|.+.|.+++ .+-+|..+||+|..|+ |||||..+|++++++....+
T Consensus 167 ~~~~~~~p~~I~AH~s~Iacv~-Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d-------------------- 225 (346)
T KOG2111|consen 167 ASTKPNAPSIINAHDSDIACVA-LNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD-------------------- 225 (346)
T ss_pred hhcCcCCceEEEcccCceeEEE-EcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc--------------------
Confidence 86554 467889999999999 9999999999999998 69999999999999986443
Q ss_pred ccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
...|.|++| +..+|+.+|+.|+|.|+.+..
T Consensus 226 --------------~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 226 --------------RADIYCIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred --------------hheEEEEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 357999999 578899999999999999875
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-15 Score=126.46 Aligned_cols=210 Identities=15% Similarity=0.155 Sum_probs=155.4
Q ss_pred EEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCee----EEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 105 IDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC----VEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
+.+..+.+++|..++..++.|++|-.+|.+.+|..+.+.. +..+..+.+...+.-++
T Consensus 98 ~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~------------------- 158 (412)
T KOG3881|consen 98 AKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTD------------------- 158 (412)
T ss_pred ccccccccccccchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCC-------------------
Confidence 3455667778888888899999999999999998874331 11222222222222111
Q ss_pred CCcccccCCCCceeeeeEEEEcCCc-eEEEecC--CeEEEEECCCCeeeEEeecC---------CCCeEEEEecCC---C
Q 014104 181 GLRSVFPSREGTFMKGLCMRYFDPE-AVVGCED--GTARVFDMYSRKCSQIIRMH---------CAPVTSLSLSED---Q 245 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d--g~i~vwd~~~~~~~~~~~~~---------~~~i~~~~~~~~---~ 245 (430)
..+. +++|+.. ..+.+||+++.+.+..-+.- .-.++++.|-++ .
T Consensus 159 ---------------------~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~ 217 (412)
T KOG3881|consen 159 ---------------------TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY 217 (412)
T ss_pred ---------------------CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCc
Confidence 1222 4556666 67777777766554433211 123456777643 6
Q ss_pred EEEEEeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee-eecCCCceEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE-TRISPNVVYSL 323 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l 323 (430)
.|++++.-+.+++||.+.++ ++..|.- ...+++++...|+|+++++|..-|.+..||++.++.+.. +.+-.+.+.++
T Consensus 218 ~fat~T~~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi 296 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI 296 (412)
T ss_pred eEEEEecceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence 89999999999999998654 5666765 567999999999999999999999999999999998877 88888999999
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
. .+|..+++++++-|..|+|+|+.+.+++...
T Consensus 297 h-~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 297 H-CHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred E-EcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 8 9999999999999999999999986665544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-14 Score=136.26 Aligned_cols=221 Identities=13% Similarity=0.058 Sum_probs=148.9
Q ss_pred CCeEEEEecCCCeeEEeeec-CCceeEEEEecCCCEEE-EEeC---CeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCC
Q 014104 131 DKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDP 204 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~ 204 (430)
+..|.+||.+.... ..+.. ...+....|+|||+.|+ ++.+ ..|.+||+.+++. .+....++ .....+++++.
T Consensus 183 ~~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-NGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc-cCceeECCCCC
Confidence 46899999876553 33433 34567799999999998 4433 4699999988753 22222222 23467888888
Q ss_pred ceEEEe-cCCeEEE--EECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE-eCCCeEEEEeCCCC-ceeEEEecCCCCCe
Q 014104 205 EAVVGC-EDGTARV--FDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG-SSLGSIAISGLSSD-QRVATLRSTDCTGI 278 (430)
Q Consensus 205 ~l~~~~-~dg~i~v--wd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg~i~vwd~~~~-~~~~~~~~~~~~~v 278 (430)
.|+.++ .+|.+.+ ||+.+++. ..+..+...+....|+|+ +.++.+ ..++...+|++... .....+ . +..
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~~-- 335 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-GRG-- 335 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-CCC--
Confidence 777654 6776554 57666654 455567777889999987 555544 46788888876432 222333 2 332
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC--CCceEEEE
Q 014104 279 KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN--TGEVLSRC 356 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~--~~~~~~~~ 356 (430)
....|+|+|+.|+..+.++ +.+||+.+++.......+ ...++. |+|+|++|+.++.++.+.+|++. +|...+.+
T Consensus 336 ~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~-~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 336 YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPS-ISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCce-ECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 4578999999998887766 666999887654322222 234566 99999999999999988888753 57788888
Q ss_pred EeccCc
Q 014104 357 VMDIGS 362 (430)
Q Consensus 357 ~~~~~~ 362 (430)
..+.+.
T Consensus 412 ~~~~g~ 417 (429)
T PRK01742 412 PGSDGQ 417 (429)
T ss_pred cCCCCC
Confidence 765553
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-14 Score=126.53 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=170.4
Q ss_pred ccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 110 AHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
+|...-+.+.. +|| .++||..--.|++||+.+..+ .|.-| +.+...-++-|-..++ -..|..|.+-..-+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 36667778877 677 678888889999999986433 23322 2233334444544444 566666665443332
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~ 261 (430)
......+.. ...++....+-+|+.++....|+-++++.|..+..+....+.++++..++- .+|++|+.+|.|..||.
T Consensus 127 hy~~RIP~~--GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 127 HYRTRIPKF--GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred eeeeecCcC--CccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecc
Confidence 211111111 112333333444777777788999999999999999888899999999974 78999999999999999
Q ss_pred CCCceeEEEecC-----CCC-----CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCCCceEEEEEeeCC-
Q 014104 262 SSDQRVATLRST-----DCT-----GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISPNVVYSLQHLQND- 329 (430)
Q Consensus 262 ~~~~~~~~~~~~-----~~~-----~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~s~~- 329 (430)
++...+.++... +.+ .|+++.|+.+|-.+++|+.+|.|.|||++..+++..-. +..-+|..+. |.+.
T Consensus 205 R~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~-~~~~~ 283 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD-WQDTD 283 (703)
T ss_pred hhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec-ccccC
Confidence 988777766532 112 49999999999999999999999999999988875432 2236788888 5443
Q ss_pred C-CeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 330 T-STLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 330 ~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+ ..+++. ....++|||-.+|+....+..
T Consensus 284 ~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 284 QQNKVVSM-DKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred CCceEEec-chHHhhhcccccCCceeeccc
Confidence 3 345444 557899999999998887764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=118.95 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=158.1
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc-----ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR- 223 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~- 223 (430)
.+.+.+.+|+.|...++ +.....+.||...+.. .++..|... +..+++.+..+.|++++.|..-++|....+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~-vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKI-VTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcc-eeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 35778899999999999 6677799999988765 234445444 456889999999999999999999998433
Q ss_pred --eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee---EEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 014104 224 --KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV---ATLRSTDCTGIKTLCYNPCSRLVFAGTTAG 297 (430)
Q Consensus 224 --~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 297 (430)
++...+..++...+++.|+|. +.|++|+....|.||-++..+.- +.++..+...|++++|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 355566678999999999986 89999999999999988754431 223333667899999999999999999999
Q ss_pred eEEEEeCC-----C-------------CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 298 YASCWDLR-----T-------------MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 298 ~i~i~d~~-----~-------------~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
..++|..- . |+++.++....+.+..+. |+|+|..|+-.+.|+++.+-|.....
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~-fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVL-FSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeE-eCCCCCEeeEecCCCceEEeecCCCc
Confidence 99999641 1 234455555568899998 99999999999999999999987554
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-14 Score=116.06 Aligned_cols=245 Identities=15% Similarity=0.197 Sum_probs=160.7
Q ss_pred CeeEEeeecCCceeEEEEecC--C-CEEE-EEe----CCeEEEEEcC--CCcccccCCCCce--eeeeEEEEcC----Cc
Q 014104 142 YKCVEEYSLPNAASLVDFDFD--E-SKIV-GLI----GTRICIWRRN--GLRSVFPSREGTF--MKGLCMRYFD----PE 205 (430)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~--~-~~l~-~~~----~~~i~vwd~~--~~~~~~~~~~~~~--~~~~~~~~~~----~~ 205 (430)
++.+.++..+-....+.|+.. . .+|+ |+. .+.|.+..++ +++.+......+. ..-+.|.+.. ++
T Consensus 35 ~~eiy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 35 RKEIYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred cceEEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 345556666666666666632 2 2344 443 3566665554 3333222211221 2224444443 23
Q ss_pred eEEEecCCeEEEEECCCC--e--eeEEe-----ecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCce---eEEEe
Q 014104 206 AVVGCEDGTARVFDMYSR--K--CSQII-----RMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQR---VATLR 271 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~--~--~~~~~-----~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~---~~~~~ 271 (430)
+++.+.| .+++|.+... + +...+ ..+.++++++.|+. + +++.+.+-|.+..|||++++.. ...+-
T Consensus 115 lLATs~D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI 193 (364)
T KOG0290|consen 115 LLATSSD-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI 193 (364)
T ss_pred hhhcccC-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence 4444444 7999988632 1 11111 23567999999984 3 7999999999999999998744 33444
Q ss_pred cCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeee---ecCCCceEEEEEeeC-CCCeEEEEcCC-CeEEEE
Q 014104 272 STDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWET---RISPNVVYSLQHLQN-DTSTLVVGGID-GVLRVL 345 (430)
Q Consensus 272 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~v~~l~~~s~-~~~~l~s~~~d-g~i~vw 345 (430)
. |...|..++|...+ +.+|+.+.||.|++||++..+.-..+ .....+...++ +++ |-+++++-..| ..|.|-
T Consensus 194 A-HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLs-wnkqDpnymATf~~dS~~V~iL 271 (364)
T KOG0290|consen 194 A-HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLS-WNKQDPNYMATFAMDSNKVVIL 271 (364)
T ss_pred e-cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeec-cCcCCchHHhhhhcCCceEEEE
Confidence 4 99999999999755 47889999999999999975543222 22235677777 544 44577776655 568888
Q ss_pred EcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE---cCeEEEEeeCCCeEEEE
Q 014104 346 DQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV---GMKKVVTTHNSKYIRLW 421 (430)
Q Consensus 346 d~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~~~~l~t~~~Dg~v~vw 421 (430)
|++.. .++.++. +|++.|++++| +...|+|||+|..+.+|
T Consensus 272 DiR~P~tpva~L~------------------------------------~H~a~VNgIaWaPhS~~hictaGDD~qaliW 315 (364)
T KOG0290|consen 272 DIRVPCTPVARLR------------------------------------NHQASVNGIAWAPHSSSHICTAGDDCQALIW 315 (364)
T ss_pred EecCCCcceehhh------------------------------------cCcccccceEecCCCCceeeecCCcceEEEE
Confidence 98753 4455554 46679999999 47889999999999999
Q ss_pred EecC
Q 014104 422 KFNY 425 (430)
Q Consensus 422 ~~~~ 425 (430)
|+..
T Consensus 316 Dl~q 319 (364)
T KOG0290|consen 316 DLQQ 319 (364)
T ss_pred eccc
Confidence 9975
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-13 Score=112.29 Aligned_cols=173 Identities=18% Similarity=0.284 Sum_probs=132.6
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCC-cccccCCCCc-eeeeeEEEEcCCc--eE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGL-RSVFPSREGT-FMKGLCMRYFDPE--AV 207 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~-~~~~~~~~~~-~~~~~~~~~~~~~--l~ 207 (430)
..|.|||=...+++.++.....+..+.+. .+.|+.-..+.|.||...+. +.+....... ....+++++.... |+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~La 152 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--RDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLA 152 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--CCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEE
Confidence 47999997777888888877666666665 45788889999999998844 3222111111 1113444444333 33
Q ss_pred -EEecCCeEEEEECCCCee--eEEeecCCCCeEEEEec-CCCEEEEEeCCCe-EEEEeCCCCceeEEEecC-CCCCeEEE
Q 014104 208 -VGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLS-EDQLIISGSSLGS-IAISGLSSDQRVATLRST-DCTGIKTL 281 (430)
Q Consensus 208 -~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~-~~~~v~~~ 281 (430)
-|-.-|.|+|-|+...+. ...+..|.+.|.|++.+ ++..+|++|..|+ |++||..+|..+..++.+ ....|+++
T Consensus 153 fPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 153 FPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCI 232 (346)
T ss_pred cCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEE
Confidence 245569999999976655 47888999999999999 6799999999997 899999999999998753 33489999
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 282 CYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 282 ~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+|+|+..+|++++..|++.||.++.
T Consensus 233 aFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 233 AFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeCCCccEEEEEcCCCeEEEEEeec
Confidence 9999999999999999999999875
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.9e-13 Score=120.34 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=131.7
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
++++-..++.|.+.|..+.+.+.++...... ..+.+++|+++++ ++.||.|.++|+.+.+.+-....+.....+++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 4456667899999999999999999876554 4478999999988 7789999999999999776666677777788899
Q ss_pred cCCceEEEe-cCCeEEEEECCCCeeeEEeecC-------CCCeEEEEecCC-C-EEEEEeCCCeEEEEeCCCCceeE--E
Q 014104 202 FDPEAVVGC-EDGTARVFDMYSRKCSQIIRMH-------CAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVA--T 269 (430)
Q Consensus 202 ~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~i~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~--~ 269 (430)
++..+++++ ..+.+.++|.++.+.++.+... ...+..+..++. . ++++--+.+.|.+-|....+.+. .
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999866654 6899999999999998887632 345677777765 4 44444555889888987655433 3
Q ss_pred EecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeee
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~ 313 (430)
+. .........|+|++++++++ ..+..|-++|.++++.+..+
T Consensus 168 i~--~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 168 IK--VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EE----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred ec--ccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 33 45578889999999987664 55678999999887665543
|
... |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-13 Score=122.21 Aligned_cols=243 Identities=10% Similarity=0.055 Sum_probs=152.7
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEE-eCCCeEEEEecC-CCee--EEeeecCCceeEEEEecCCCEEEEE--eCCeEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTG-VGDKVMRLWSLE-GYKC--VEEYSLPNAASLVDFDFDESKIVGL--IGTRIC 175 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~-~~dg~i~iwd~~-~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~i~ 175 (430)
.++++. +.+....+++ +++ +|+++ ..++.|.+|++. +++. +...........++++|+++.++++ .++.|.
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence 344444 3355667777 455 66555 458899999986 3332 3333334456679999999998833 379999
Q ss_pred EEEcCCCccc---ccC-CCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEE-----ee-cCCCCeEEEEecCC
Q 014104 176 IWRRNGLRSV---FPS-REGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQI-----IR-MHCAPVTSLSLSED 244 (430)
Q Consensus 176 vwd~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~-----~~-~~~~~i~~~~~~~~ 244 (430)
+|++++.... ... ........+.+.+++..++ +...++.|.+||+.+...+.. .. ........+.|+|+
T Consensus 106 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd 185 (330)
T PRK11028 106 VSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN 185 (330)
T ss_pred EEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCC
Confidence 9999743211 111 1111122345666666654 555679999999976332211 11 11234578999987
Q ss_pred -CEEEEEeC-CCeEEEEeCCC--Cc--eeEEEecC-----CCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCCCceeee
Q 014104 245 -QLIISGSS-LGSIAISGLSS--DQ--RVATLRST-----DCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRTMKSLWE 312 (430)
Q Consensus 245 -~~l~~~~~-dg~i~vwd~~~--~~--~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~ 312 (430)
++++++.. +++|.+||+.. ++ .+..+... .......+.++|+|++++++.. ++.|.+|++.......+
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 67767665 89999999973 32 23333220 1112346889999999998854 68899999865332222
Q ss_pred eecCC---CceEEEEEeeCCCCeEEEEcC-CCeEEEEEcC
Q 014104 313 TRISP---NVVYSLQHLQNDTSTLVVGGI-DGVLRVLDQN 348 (430)
Q Consensus 313 ~~~~~---~~v~~l~~~s~~~~~l~s~~~-dg~i~vwd~~ 348 (430)
+..+. .....+. ++|+|++|+++.. +++|.+|+++
T Consensus 266 ~~~~~~~~~~p~~~~-~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 266 FEGHQPTETQPRGFN-IDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EeEEEeccccCCceE-ECCCCCEEEEEEccCCcEEEEEEc
Confidence 22221 2345677 9999999988775 8999999875
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-15 Score=131.39 Aligned_cols=221 Identities=15% Similarity=0.155 Sum_probs=148.6
Q ss_pred hcccCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEEEEeCC
Q 014104 97 ALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIGT 172 (430)
Q Consensus 97 ~~~~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~ 172 (430)
.|.++-..-++|.||++.|+|+.| .+| +|++||.|-.+.|||.-..+.++.+...+ .+.++.|-|..
T Consensus 35 ~~lrrL~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t--------- 105 (758)
T KOG1310|consen 35 TWLRRLDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT--------- 105 (758)
T ss_pred HHHhhcchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC---------
Confidence 344445555689999999999999 466 99999999999999999888888877543 23345554421
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC----------eeeEEeecCCCCeEEEEec
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR----------KCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~~i~~~~~~ 242 (430)
.+..+++|..|..|+++|+... +....+..|...|..++..
T Consensus 106 -----------------------------nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~ 156 (758)
T KOG1310|consen 106 -----------------------------NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA 156 (758)
T ss_pred -----------------------------CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecC
Confidence 0111566666777777776531 2334455678888888888
Q ss_pred CC--CEEEEEeCCCeEEEEeCCCCceeEEEecC---------CCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCC---
Q 014104 243 ED--QLIISGSSLGSIAISGLSSDQRVATLRST---------DCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTM--- 307 (430)
Q Consensus 243 ~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~--- 307 (430)
|+ +.+.++++||+++-+|++.......-... .--...++.++|.. .+|++|+.|-..++||.+..
T Consensus 157 p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks 236 (758)
T KOG1310|consen 157 PNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKS 236 (758)
T ss_pred CCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccC
Confidence 75 68999999999999999863321111100 11256789999876 47889999999999995421
Q ss_pred -----c----------eeeee-ecCC-----------CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 308 -----K----------SLWET-RISP-----------NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 308 -----~----------~~~~~-~~~~-----------~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
. ++.-+ .+|. ..++-+. |+|+|.-|+..-..-.|+++|+..++....+
T Consensus 237 ~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt-fnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 237 FRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT-FNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred CCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE-ECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 0 11111 1111 1134455 8999987766655668999999877654433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-13 Score=125.70 Aligned_cols=266 Identities=12% Similarity=0.133 Sum_probs=188.5
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC--Ce--eEEeee-cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCC
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG--YK--CVEEYS-LPNAASLVDFDFDESKIV-GLIGTRICIWRRNG 181 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~--~~--~~~~~~-~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~ 181 (430)
.|+-.++|.++ +++ ++++|..||.|.+|.--. +. ....+. ++..+.+++|+++|.+|+ |+..+-+.+|.+++
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T 282 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET 282 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecC
Confidence 46666888888 455 999999999999995322 11 122222 457889999999999999 89999999999999
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec-----------CCCCeEEEEecCC-CEEEE
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-----------HCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~i~~~~~~~~-~~l~~ 249 (430)
++..+...-+.....+.+++++...+....|..|.+....+.+...++.+ ..+-.+.+.++|. +.++.
T Consensus 283 ~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 283 GKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred CCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 98777777777777788888888888888899999998765544333322 2344677888884 77888
Q ss_pred EeCCCeEEEEeCCCCceeEEEecC----C------CCCeEEEEEecCCCEEEEEe--------CCC--eEEEEeCCCCce
Q 014104 250 GSSLGSIAISGLSSDQRVATLRST----D------CTGIKTLCYNPCSRLVFAGT--------TAG--YASCWDLRTMKS 309 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~----~------~~~v~~~~~~~~~~~l~~~~--------~dg--~i~i~d~~~~~~ 309 (430)
.+..|.|.+||+.+...+..+... + ...+++++.+..|.+++|.- .|| .+++|-......
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~k 442 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSK 442 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcc
Confidence 899999999999988877666421 1 12577888888899998873 232 477887654322
Q ss_pred e----e-eeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCc----------eEEEEEeccCcceeeeccCCce
Q 014104 310 L----W-ETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGE----------VLSRCVMDIGSASSSSNKVSGV 373 (430)
Q Consensus 310 ~----~-~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~----------~~~~~~~~~~~~~~~~~s~d~~ 373 (430)
- . ....|...+...++.++... ..++++.||.+++|-....+ +...-..|...+...++|.||+
T Consensus 443 t~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs 522 (792)
T KOG1963|consen 443 TFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGS 522 (792)
T ss_pred eeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCc
Confidence 1 1 23457666666654555544 88999999999999884221 2221123556667778888886
Q ss_pred EE
Q 014104 374 IE 375 (430)
Q Consensus 374 v~ 375 (430)
+.
T Consensus 523 ll 524 (792)
T KOG1963|consen 523 LL 524 (792)
T ss_pred EE
Confidence 63
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-14 Score=134.36 Aligned_cols=272 Identities=17% Similarity=0.206 Sum_probs=176.4
Q ss_pred EecCCCeeEEeeecC-CceeEEEEecCC-CEEE-EEeCCeEEEEEcCCCc--------ccccCCCCceeeeeEEEEcCCc
Q 014104 137 WSLEGYKCVEEYSLP-NAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLR--------SVFPSREGTFMKGLCMRYFDPE 205 (430)
Q Consensus 137 wd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~-~~~~~~i~vwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 205 (430)
|+.. |..+..+..| ..+.-++.++.. .+++ ++.||+|++|+...-. .......+.....+.++..+..
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 4433 4555555544 334446666544 7788 8999999999986421 1122234555667788888888
Q ss_pred eEEEecCCeEEEEECCCC--e-----eeEEeecC-CCCeEEE-EecC--CC-EEEEEeCCCeEEEEeCCCCceeEEEecC
Q 014104 206 AVVGCEDGTARVFDMYSR--K-----CSQIIRMH-CAPVTSL-SLSE--DQ-LIISGSSLGSIAISGLSSDQRVATLRST 273 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~--~-----~~~~~~~~-~~~i~~~-~~~~--~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 273 (430)
+++++.||.|++.++... + +......+ .+.+.+| ++.. .. .++.+..-+.|..||++......+++..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 999999999999998652 1 12222222 2344444 3332 23 7888888999999999987766655431
Q ss_pred -CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCCCceEEEEEeeC---CCCeEEEEc--CCCeEEEEE
Q 014104 274 -DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISPNVVYSLQHLQN---DTSTLVVGG--IDGVLRVLD 346 (430)
Q Consensus 274 -~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~s~---~~~~l~s~~--~dg~i~vwd 346 (430)
..+.|++++.+|.++++++|+..|.+.+||++-+.++..+. ++..++..+. ..| .....++++ ..+.|.+|+
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~-~~~~~~~~S~~vs~~~~~~nevs~wn 1271 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVW-LCPTYPQESVSVSAGSSSNNEVSTWN 1271 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEE-eeccCCCCceEEEecccCCCceeeee
Confidence 34589999999999999999999999999999888887654 2335666665 433 334555444 578899999
Q ss_pred cCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC-CCeeE-EEEcCeEEEEeeCCCeEEEEEec
Q 014104 347 QNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR-PPITC-LAVGMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~-~~v~~-v~~~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+.+|.+-.++...++...+--. ++.+ ...+.+. ..+.| +.--+..+.+|+.|+.||.||..
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~-------------~Ps~----~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYA-------------LPSN----DARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhh-------------cccc----cCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 9999887777654221111000 0000 0001111 12222 22246789999999999999987
Q ss_pred CCC
Q 014104 425 YSD 427 (430)
Q Consensus 425 ~~~ 427 (430)
..+
T Consensus 1335 ~p~ 1337 (1431)
T KOG1240|consen 1335 RPE 1337 (1431)
T ss_pred Ccc
Confidence 654
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=126.93 Aligned_cols=203 Identities=17% Similarity=0.130 Sum_probs=156.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
.++.++.||.+.+-+ ..++..+.+..| +.+.+-.|++||.-|+ ++.||.|++|.-.+.-.......+..+.+..|.+
T Consensus 77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p 155 (737)
T KOG1524|consen 77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP 155 (737)
T ss_pred eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence 788889999999887 455767777766 4556688999999999 8999999999988765544445555566677777
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
++..++-+.. +.+.+=-+.....+-..+.|.+-|.++.|++- +++++|++|-..++||.. |+.+.+-.. |+.+|++
T Consensus 156 ~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~-~ey~ITS 232 (737)
T KOG1524|consen 156 NSNSIVFCQG-GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAA-EEYAITS 232 (737)
T ss_pred CCCceEEecC-CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCCh-hccceee
Confidence 7776554433 35666666666666778899999999999964 899999999999999964 777766655 8889999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
++|+|+ ..++.++.+ ++++ -+...+.|..++ ||+||..+++|...|.+.+
T Consensus 233 va~npd-~~~~v~S~n-t~R~-----------~~p~~GSifnls-WS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 233 VAFNPE-KDYLLWSYN-TARF-----------SSPRVGSIFNLS-WSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeccc-cceeeeeee-eeee-----------cCCCccceEEEE-EcCCCceeeccccCceEEE
Confidence 999999 666666553 3441 122347899999 9999999999999888754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-12 Score=119.35 Aligned_cols=265 Identities=17% Similarity=0.109 Sum_probs=176.9
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeee
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGL 197 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~ 197 (430)
...++.+++++.+|.|..+|..+|+.+..+........ ....++..++ ++.++.+..+|.++++..+..........
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~- 139 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLS- 139 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeec-
Confidence 44577899999999999999999999887776543222 1122345554 88899999999999887665443322111
Q ss_pred EEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeE-----EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-----SLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 198 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~-----~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
.....+..++.++.+|.+..+|.++|+.+..+......+. +... .++.++.+..++.+..+|.++|+.+.....
T Consensus 140 ~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 140 PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 1112345578888899999999999998887764332211 1111 135678888899999999999988765432
Q ss_pred CCCC---C------e-EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 273 TDCT---G------I-KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 273 ~~~~---~------v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
.... . + ....+ .+..+++++.+|.++.||..+++.+...... ...... ..+..++.++.+|.|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~---~~~~~vyv~~~~G~l 291 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA---VDDNRLYVTDADGVV 291 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce---EeCCEEEEECCCCeE
Confidence 1110 0 0 01112 3457888888999999999999888766522 112222 246778888899999
Q ss_pred EEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEE
Q 014104 343 RVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 343 ~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~ 422 (430)
+.+|..+|+.+........ ....+....+..+++++.||.|.++|
T Consensus 292 ~~~d~~tG~~~W~~~~~~~-----------------------------------~~~ssp~i~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKY-----------------------------------RQLTAPAVVGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred EEEECCCCcEEEccccccC-----------------------------------CccccCEEECCEEEEEeCCCEEEEEE
Confidence 9999999987765422111 01222233566788888999999999
Q ss_pred ecCCCc
Q 014104 423 FNYSDK 428 (430)
Q Consensus 423 ~~~~~~ 428 (430)
..+|+.
T Consensus 337 ~~tG~~ 342 (377)
T TIGR03300 337 REDGSF 342 (377)
T ss_pred CCCCCE
Confidence 887764
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.5e-14 Score=116.20 Aligned_cols=237 Identities=14% Similarity=0.085 Sum_probs=168.6
Q ss_pred EEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCC---eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 106 DQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGY---KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
..+.--.++|+|.+|+ ++ .+|.+-....|.||..... +..++++.| ..+..++|+|..+.|+ ++.|..-++|.
T Consensus 4 ~~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred EEeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 3444556799999994 55 8999999999999987654 456777766 4466799999999988 89999999999
Q ss_pred c-CCCc--c-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee----EEeecCCCCeEEEEecCC-CEEEE
Q 014104 179 R-NGLR--S-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS----QIIRMHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 179 ~-~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~~~~~~~i~~~~~~~~-~~l~~ 249 (430)
. +++. . +...........+.+++.++.+++|+....|.||-.+..+-- +.-+.+.+.|++++|+|+ -++++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 8 4443 1 112222333456778888888999999999999987654322 123345678999999977 57888
Q ss_pred EeCCCeEEEEeCC------------------CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-ee
Q 014104 250 GSSLGSIAISGLS------------------SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK-SL 310 (430)
Q Consensus 250 ~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~ 310 (430)
|+.|+.+++|..- -|+.+..+.. ..+.+..+.|+|+|..|+-.+.|..+.+-|..... .+
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~-~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS-SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc-CCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 8999999998632 1233333422 55689999999999999999999999999987654 33
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
..+....-+..++.|.+ ...++.++.|..=.++
T Consensus 243 ~~~~~~~lP~ls~~~is--e~~vv~ag~~c~P~lf 275 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWIS--ENSVVAAGYDCGPVLF 275 (361)
T ss_pred cchhhccCCceeeEeec--CCceeecCCCCCceEE
Confidence 33333335666776443 2446666666433333
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.5e-13 Score=114.23 Aligned_cols=244 Identities=15% Similarity=0.195 Sum_probs=166.5
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEe-cCCCeeEEeeec--CCceeEEEEecCCCEEE-EEeCCeEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWS-LEGYKCVEEYSL--PNAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd-~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
...++.++||.+.|+.... +.. -+++.+.|.++|||- .+.++.-..+.. +..+.++.+..+...|+ +-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 3456678999999998766 544 899999999999994 556666555554 56777888888888888 77788888
Q ss_pred EEEcCCCc--c-cccCCCCceeeeeEEEEc--CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEE
Q 014104 176 IWRRNGLR--S-VFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISG 250 (430)
Q Consensus 176 vwd~~~~~--~-~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 250 (430)
-+.+...- . .......+...+....+. ...+++.+.|..+.---.+.+..+..+... ...+++.+.- .+...|
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-~~~t~~~~d~-~~~fvG 171 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-TPASALQFDA-LYAFVG 171 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee-ccCCCCceee-EEEEec
Confidence 88765322 1 122222333333333333 334888888877765555555544333211 1111122211 144445
Q ss_pred eCCCeEEEEeC--CCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce-eeeeecCCCceEEEEEee
Q 014104 251 SSLGSIAISGL--SSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS-LWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 251 ~~dg~i~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~s 327 (430)
...|.|.+-.+ ..-..+.++.+ |.+.+++++|.|....|++|..|..+.+||+--.+- ..++.+|.+.|..+. .-
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~-h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~-~~ 249 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNG-HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALS-YA 249 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcC-cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhh-hh
Confidence 55555544333 34556777877 889999999999999999999999999999975443 346788988898887 65
Q ss_pred CCCCeEEEEcCCCeEEEEEcCC
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+--+.+++++.||.|.+||.+.
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhheeeeeccCCCeEEEEeccc
Confidence 6678899999999999999874
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-12 Score=117.48 Aligned_cols=231 Identities=16% Similarity=0.126 Sum_probs=155.7
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCcee----ee
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFM----KG 196 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~----~~ 196 (430)
.++.++.++.++.+..+|..+|+.+................++..+++..++.+..||.++++.++........ ..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 45688889999999999999999988776554332211222444444788999999999988865543222110 00
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC----C------e-EEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA----P------V-TSLSLSEDQLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~------i-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 265 (430)
......+..++.+..+|.+..+|.++|+.+........ . + ....+ .++.++.++.+|.+..+|..+|+
T Consensus 184 ~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~ 262 (377)
T TIGR03300 184 ASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGR 262 (377)
T ss_pred CCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCc
Confidence 11112234578888899999999999987765431110 0 0 01111 24678888889999999999999
Q ss_pred eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 266 RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
.+..... . ....... .+..+++++.+|.+..+|..+++.+.+..... ....+.. . .+..|++++.+|.|++
T Consensus 263 ~~W~~~~--~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~-i--~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 263 VLWKRDA--S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA-V--VGGYLVVGDFEGYLHW 334 (377)
T ss_pred EEEeecc--C-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE-E--ECCEEEEEeCCCEEEE
Confidence 8877652 1 1222222 46778888899999999999998887653221 2222222 2 3668899999999999
Q ss_pred EEcCCCceEEEEEecc
Q 014104 345 LDQNTGEVLSRCVMDI 360 (430)
Q Consensus 345 wd~~~~~~~~~~~~~~ 360 (430)
+|..+|+.+.++..+.
T Consensus 335 ~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 335 LSREDGSFVARLKTDG 350 (377)
T ss_pred EECCCCCEEEEEEcCC
Confidence 9999999999887543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9e-14 Score=124.29 Aligned_cols=241 Identities=16% Similarity=0.188 Sum_probs=171.2
Q ss_pred EeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc---eEEEecCCeEEEEEC
Q 014104 146 EEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE---AVVGCEDGTARVFDM 220 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~dg~i~vwd~ 220 (430)
+.|..+.....+.++|||++++ |...-.|++||+..-...+..|...- ++.+.+...+ ++.-..|.+|.+...
T Consensus 46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae--~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAE--VVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeeccccc--ceeEEEeccchhhheEeecCceeeehhh
Confidence 3455667778899999999998 56678999999998877666655432 2333332222 555566667666442
Q ss_pred CCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 221 YSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
.|.-. .+. -...-.+++++ ++--++.++....|+-++++.|+.+..+.. ..+.+.++..++...+|++|+.+|.|
T Consensus 124 -~G~hy-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~V 199 (703)
T KOG2321|consen 124 -YGRHY-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVV 199 (703)
T ss_pred -cCeee-eee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceE
Confidence 22211 111 12233567777 563355555567899999999999999986 56799999999999999999999999
Q ss_pred EEEeCCCCceeeeeec------CCC-----ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeec
Q 014104 300 SCWDLRTMKSLWETRI------SPN-----VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSN 368 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~------~~~-----~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 368 (430)
..||.++...+..+.. |.+ .|+++. |+.+|-.+++|..+|.|.|||+++.+++..-. |..
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~-F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd-h~~------- 270 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALK-FRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD-HGY------- 270 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEE-ecCCceeEEeeccCCcEEEEEcccCCceeecc-cCC-------
Confidence 9999998766554432 332 499999 98889999999999999999999887765432 222
Q ss_pred cCCceEEEeecccccCCcccccCCCCCCCCeeEEEE---c-CeEEEEeeCCCeEEEEEecCCCcC
Q 014104 369 KVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV---G-MKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 369 s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~-~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
.-+|..+.| + +..++|.. ...++|||-.+|+.+
T Consensus 271 ---------------------------e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 271 ---------------------------ELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPM 307 (703)
T ss_pred ---------------------------ccceeeecccccCCCceEEecc-hHHhhhcccccCCce
Confidence 236777777 2 34566654 468999998888754
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=118.24 Aligned_cols=301 Identities=15% Similarity=0.106 Sum_probs=207.9
Q ss_pred HHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCCCCCCCCchHHHHHHHHcccchhhcccCCEe--------
Q 014104 33 CMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRID-------- 104 (430)
Q Consensus 33 ~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 104 (430)
.+|-+||..+.|.....+-+.|+.-... |.+|++.. ..---++.++.|+.+.+.+..|+-.
T Consensus 17 ~~i~~FL~QR~i~~~~~~~k~F~~~~~~----R~~~qKD~-------~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~ 85 (609)
T KOG4227|consen 17 FKIESFLCQREIGSVKSVVKTFRPDFQH----RPFCQKDV-------REHTGCINALQFSHNDRFLASGGDDMHGRVWNV 85 (609)
T ss_pred ceeeeeeeecccCCChhhhhhhchhhhh----cchhhhhh-------hhhccccceeeeccCCeEEeecCCcceeeeech
Confidence 4678899888888877777776644333 44454441 0001224556677777777776642
Q ss_pred -----------EEEEe-ccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecCC---ceeEEEEecCCCEEE
Q 014104 105 -----------IDQWK-AHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV 167 (430)
Q Consensus 105 -----------~~~l~-~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 167 (430)
+.... .|...|.|++|.- + ++++|+.+++|...|+++.+.+..+...+ .+..+..+|..+.++
T Consensus 86 de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~ 165 (609)
T KOG4227|consen 86 DELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLI 165 (609)
T ss_pred HHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEE
Confidence 22222 3568999999954 3 99999999999999999999988887654 677789999877777
Q ss_pred -EEeCCeEEEEEcCCCc----ccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCee-eE------EeecCCC
Q 014104 168 -GLIGTRICIWRRNGLR----SVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKC-SQ------IIRMHCA 234 (430)
Q Consensus 168 -~~~~~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~-~~------~~~~~~~ 234 (430)
.+.++.|.+||..... ..+....+......-+.+..|. |++++..+-+-+||.+..+. +. .+.....
T Consensus 166 ~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 166 VVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT 245 (609)
T ss_pred EEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccch
Confidence 8889999999987654 2233333333333344444444 78888889999999875432 11 1222223
Q ss_pred CeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce-eEEEecCCCC-------CeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQR-VATLRSTDCT-------GIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
..+.+.|+|+ +.+++--....-.+||+.+.++ +.++. |.. .+.+++|-.+ ..+++|+.+-.|++|.+.
T Consensus 246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D--~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP 322 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD--HNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLP 322 (609)
T ss_pred hhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc--CCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecC
Confidence 3467888865 6777766666777889877443 33333 322 5667788644 458999999999999874
Q ss_pred CC-----------------------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 306 TM-----------------------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 306 ~~-----------------------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.. +.+..+++|...+..+. |+|...+|++.+-.+.+++|.-.
T Consensus 323 ~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR-F~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 323 RANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR-FSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred CCccccCccccCcchhhCchhheecceeEEEeccccccccee-ecCCcceEeccchhhheeccccc
Confidence 21 23456889999999998 99999999999999999999643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.7e-12 Score=113.97 Aligned_cols=253 Identities=16% Similarity=0.131 Sum_probs=161.1
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~ 179 (430)
.+.++....+.-..+.+ +|+ ++++++.||.|.++|+.+++.++++........+++++||++++ + ...+.+.++|.
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~ 107 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDA 107 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEecc
Confidence 45666655444334566 566 88888999999999999999999999888888899999999998 3 45899999999
Q ss_pred CCCcccccCCCC--------ceeeeeEEEEcCCceEEEec-CCeEEEEECCCCeeeE-EeecCCCCeEEEEecCC-CEEE
Q 014104 180 NGLRSVFPSREG--------TFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSED-QLII 248 (430)
Q Consensus 180 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~-~~~~~~~~i~~~~~~~~-~~l~ 248 (430)
++.+.+.....+ .....+..++..+.++..-. .+.|.+.|....+.+. .............|+|+ ++++
T Consensus 108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence 987754322211 11122223345554555554 4888888977654332 22223446678888876 5554
Q ss_pred E-EeCCCeEEEEeCCCCceeEEEecC------------C-----------------------------------------
Q 014104 249 S-GSSLGSIAISGLSSDQRVATLRST------------D----------------------------------------- 274 (430)
Q Consensus 249 ~-~~~dg~i~vwd~~~~~~~~~~~~~------------~----------------------------------------- 274 (430)
. ...++.|.++|..+++.+..+... |
T Consensus 188 va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred ecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 4 456678888888776655433210 0
Q ss_pred CCCeEEEEEecCCCEEEEE----eCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcC--CCeEEEEEc
Q 014104 275 CTGIKTLCYNPCSRLVFAG----TTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGI--DGVLRVLDQ 347 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~--dg~i~vwd~ 347 (430)
.+.-.-+..+|+++++++. ...++|.++|.++.+.+..+.... ..+..+. |+++|+++..+.. ++.|.+||.
T Consensus 268 ~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e-f~~dG~~v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 268 QGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME-FNPDGKEVWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE-E-TTSSEEEEEEE--TTEEEEEET
T ss_pred CCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE-ECCCCCEEEEEEecCCCEEEEEEC
Confidence 0112456678999999987 445789999999998877765432 3488888 9999997766553 347999999
Q ss_pred CCCceEEEEE
Q 014104 348 NTGEVLSRCV 357 (430)
Q Consensus 348 ~~~~~~~~~~ 357 (430)
.+.+.+.++.
T Consensus 347 ~Tl~~~~~i~ 356 (369)
T PF02239_consen 347 KTLKEKKRIP 356 (369)
T ss_dssp TTTEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999999887
|
... |
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-13 Score=127.93 Aligned_cols=217 Identities=11% Similarity=-0.021 Sum_probs=143.7
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEE-
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICI- 176 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~v- 176 (430)
.+.+..|...+.+..| |+| .|+.++.+ ..|.+||+.+++..............+|+|||+.|+ +. .+|.+.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence 3456677788899999 566 77776653 479999998876433222223334689999999988 43 5776555
Q ss_pred -EEcCCCcccccCCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 177 -WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 177 -wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
||+.++................+.+++..++.++ .+|...+|++... .....+ .+.+ ....|+|+ +.++.++.
T Consensus 276 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 276 VMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMING 352 (429)
T ss_pred EEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcC
Confidence 4666555322222222344577888887766544 5788888876432 222223 3433 45778876 77777776
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC--CCCceeeeeecCCCceEEEEEeeCC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL--RTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~--~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
++ +.+||+.+++....... . ....+.|+|+|++|+.++.++.+.+|++ .+++.+..+..|.+.+...+ |+|-
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~-~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~-wsp~ 426 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSST-F--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPA-WSPY 426 (429)
T ss_pred CC-EEEEECCCCCeEEecCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcc-cCCC
Confidence 55 55699998876433222 2 3356789999999999999998888875 35778888888888888887 8774
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-13 Score=115.15 Aligned_cols=193 Identities=12% Similarity=0.130 Sum_probs=149.1
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCCe----eeEEeecCCCCeEEEEecCC--CEEEEEeCC--CeEEEEeCCCCceeE
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLSED--QLIISGSSL--GSIAISGLSSDQRVA 268 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~--~~l~~~~~d--g~i~vwd~~~~~~~~ 268 (430)
..+...+..|++|-.+|.+.+|....+. .+..+..+ ..+..|.-++. .++++|+.. ..+.+||+.+.+.+.
T Consensus 109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred cchhhcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 3344445558999999999999987442 23333322 45666666654 577789988 899999999886655
Q ss_pred EEecCCC--------CCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 269 TLRSTDC--------TGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTM-KSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 269 ~~~~~~~--------~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
.-+.... -.++++.|-|. ...|++++.-+.+++||.+.+ +++..+.....+++++. ..|+++++++|.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~-l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG-LTPSGNFIYTGN 266 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeee-ecCCCcEEEEec
Confidence 4432111 25778889887 789999999999999999874 57788887788999998 889999999999
Q ss_pred CCCeEEEEEcCCCceEEE-EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcC--eEEEEeeC
Q 014104 338 IDGVLRVLDQNTGEVLSR-CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGM--KKVVTTHN 414 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~--~~l~t~~~ 414 (430)
.-|.+..||++.++.... +. +..+.|+++..++ .+++++|-
T Consensus 267 ~~g~l~~FD~r~~kl~g~~~k------------------------------------g~tGsirsih~hp~~~~las~GL 310 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKLLGCGLK------------------------------------GITGSIRSIHCHPTHPVLASCGL 310 (412)
T ss_pred ccchhheecccCceeeccccC------------------------------------CccCCcceEEEcCCCceEEeecc
Confidence 999999999998887665 33 2345888888864 58999999
Q ss_pred CCeEEEEEecCCC
Q 014104 415 SKYIRLWKFNYSD 427 (430)
Q Consensus 415 Dg~v~vw~~~~~~ 427 (430)
|..|||+|+++.+
T Consensus 311 DRyvRIhD~ktrk 323 (412)
T KOG3881|consen 311 DRYVRIHDIKTRK 323 (412)
T ss_pred ceeEEEeecccch
Confidence 9999999999843
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-14 Score=122.43 Aligned_cols=190 Identities=17% Similarity=0.197 Sum_probs=135.2
Q ss_pred eEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEe-eecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCC-
Q 014104 116 DQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE-YSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSRE- 190 (430)
Q Consensus 116 ~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~- 190 (430)
.+++| .+| .+++|+.||++|||+..+...+.. ..++..+..+.|+||++.|+ .+.+ ..+||+.+++..+....+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 56777 344 999999999999999776655544 44567888899999999999 6666 999999999854322221
Q ss_pred --CceeeeeEEEEcC--Cc--e-EEEecCCeEEEEECCCCee---e--EEeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 191 --GTFMKGLCMRYFD--PE--A-VVGCEDGTARVFDMYSRKC---S--QIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 191 --~~~~~~~~~~~~~--~~--l-~~~~~dg~i~vwd~~~~~~---~--~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
......+.+..++ +. + +....-+.|..||+..... + .....-...|++++++++ ++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 1111122222222 11 2 2223345566665532211 1 111112347999999965 8999999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+++..+.+.++-.+..|..-|+.+.|+|+.+++++.+.+....+..+.-
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999888999999999999999999988888888876653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-14 Score=120.94 Aligned_cols=150 Identities=16% Similarity=0.207 Sum_probs=126.7
Q ss_pred ceEEEecCCeEEEEECCCCe---------eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC--------C---
Q 014104 205 EAVVGCEDGTARVFDMYSRK---------CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS--------S--- 263 (430)
Q Consensus 205 ~l~~~~~dg~i~vwd~~~~~---------~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~--------~--- 263 (430)
.+++|+.|..|++|-+..+. .+..+..|...|+++.|+|+ +++++|+++|.|.+|-.. +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 49999999999999876432 23456789999999999976 899999999999999765 2
Q ss_pred --C---ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 264 --D---QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 264 --~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
. ...+.+.+ |...|..++|+|+++++++++.|..+++||+..|+.+..+..|...+..++ |.|-++++++-+.
T Consensus 108 ~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva-wDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA-WDPLNQYVASKSS 185 (434)
T ss_pred hCccceEEEEEecc-cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceee-cchhhhhhhhhcc
Confidence 1 12333444 888999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred CCeEEEEEcCCCceEEEE
Q 014104 339 DGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~ 356 (430)
|...+.+.+.....++..
T Consensus 186 dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 186 DRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred Ccccceeeeeeeeeeeee
Confidence 998888887755444433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-12 Score=119.13 Aligned_cols=221 Identities=12% Similarity=0.062 Sum_probs=146.0
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCceE
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 207 (430)
.|.+||.+.........+.......+|+|||+.|+ .+. +..+.+|++.+++... ....+. .....+++++..|+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEEE
Confidence 78899987655444344455677799999999988 432 3579999998876322 222222 23467888888766
Q ss_pred EE-ecCC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC-C--eEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 208 VG-CEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL-G--SIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 208 ~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.. +.+| .|++||+.+++.... ..+...+....|+|+ +.|+..+.+ + .|.++|+.+++.. .+.. .......
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~-~~~~~~~ 335 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQD 335 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec-CCCCccC
Confidence 54 4444 589999988766543 334456788999986 666666543 4 4555577766543 3332 3335667
Q ss_pred EEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe---EEEEEcCCCceEE
Q 014104 281 LCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV---LRVLDQNTGEVLS 354 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~---i~vwd~~~~~~~~ 354 (430)
..|+|+|++++..+.+ ..|.+||+.+++.. .+... ....... |+|||++|+.++.++. +.++++. |...+
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~-~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~ 411 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPS-IAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKA 411 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCce-ECCCCCEEEEEEcCCCceEEEEEECC-CCCeE
Confidence 8999999998876543 35889999877643 33321 1233555 9999999998887754 6777874 66666
Q ss_pred EEEeccC
Q 014104 355 RCVMDIG 361 (430)
Q Consensus 355 ~~~~~~~ 361 (430)
.+..+.+
T Consensus 412 ~l~~~~~ 418 (429)
T PRK03629 412 RLPATDG 418 (429)
T ss_pred ECccCCC
Confidence 6765544
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=121.03 Aligned_cols=161 Identities=11% Similarity=0.197 Sum_probs=121.0
Q ss_pred EEEEEeCCeEEEEEcCCCcc--ccc---CCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCC--------------Ce
Q 014104 165 KIVGLIGTRICIWRRNGLRS--VFP---SREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYS--------------RK 224 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~--~~~---~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~--------------~~ 224 (430)
.+++-..|.+.+.|....+. ++. ......+..+.|.+.++. ++++-.+|.+++||..- +.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 34588889999988766331 111 111223344555555555 77888899999997531 11
Q ss_pred e--------------eEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCE
Q 014104 225 C--------------SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRL 289 (430)
Q Consensus 225 ~--------------~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 289 (430)
. +.....-.+.|..++|+|+ .+||+.+.||.++|||..+.+.+..++. --+...|++|+|||++
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS-YFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS-YFGGLLCVCWSPDGKY 346 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh-hccceEEEEEcCCccE
Confidence 1 1111112457888999976 8999999999999999999888776665 4568999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 290 VFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
+++|++|..|.||.+...+.+..-++|..+|..++ |.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~Va-FD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVA-FD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEe-ec
Confidence 99999999999999999999999999999999998 76
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=134.44 Aligned_cols=252 Identities=14% Similarity=0.185 Sum_probs=184.5
Q ss_pred cccchhhcccCCE-------------eEEEEeccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC-Cce
Q 014104 91 MKHHRFALEEGRI-------------DIDQWKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAA 154 (430)
Q Consensus 91 ~~~~~~~~~~~~~-------------~~~~l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~ 154 (430)
+++.+.++.+|.- ++..+.||.+.|+.++.+. + +++++|.|..|++|.+.++.++..+.+| +.+
T Consensus 198 fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgav 277 (1113)
T KOG0644|consen 198 FDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAV 277 (1113)
T ss_pred eccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccce
Confidence 4555566666553 4557789999999999964 4 9999999999999999999999999887 567
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCCcccc-----cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe
Q 014104 155 SLVDFDFDESKIVGLIGTRICIWRRNGLRSVF-----PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
..++|+|-. .++.||++++||..-....+ ....+......-+...+..+++++.|+.-..|.+..-..
T Consensus 278 taiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~---- 350 (1113)
T KOG0644|consen 278 TAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW---- 350 (1113)
T ss_pred eeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh----
Confidence 789999865 46779999999987211111 111222222333444455589999999888887542211
Q ss_pred ecCCCCeEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCC
Q 014104 230 RMHCAPVTSLSLS--EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRT 306 (430)
Q Consensus 230 ~~~~~~i~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~ 306 (430)
+...+.-+..+ -+.+.+++-.+..+++|++.+|+..+.+.+ |...+..+.++|-...++ +++.||...|||+-.
T Consensus 351 --~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~g-hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 351 --RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMG-HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred --hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcc-cccceeeeeecCCCcHhhhhccCCCceEeeeccc
Confidence 11111111111 125677778888999999999999998887 888999999999776555 889999999999999
Q ss_pred CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 307 MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 307 ~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
+.+++.+......+..-+ ||++|..++....-|.++|.....++..
T Consensus 428 g~pik~y~~gh~kl~d~k-FSqdgts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 428 GIPIKHYFIGHGKLVDGK-FSQDGTSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred CCcceeeecccceeeccc-cCCCCceEecCCCCCceEEeccCCCccc
Confidence 988876554445566666 9999999998888899999987655443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-12 Score=118.53 Aligned_cols=219 Identities=16% Similarity=0.082 Sum_probs=142.7
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCce
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l 206 (430)
..|.+||...........+...+....|+||++.|+ .+. ...|.+||+.+++... ....+ ......+++++..+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-CccCceECCCCCEE
Confidence 368999987654443333445566789999999988 442 3469999998876432 22222 23345677778775
Q ss_pred E-EEecCC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCe--EEEEeCCCCceeEEEecCCCCCeE
Q 014104 207 V-VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGS--IAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 207 ~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~--i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
+ +.+.+| .|++||+.+++.. .+..+.......+|+|+ +.++.++ .+|. |.++|+.+++...... ......
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~~~~ 339 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGNYNA 339 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCCCcc
Confidence 4 455555 5999999887653 45555555677899976 6666655 3444 7777877766433222 233455
Q ss_pred EEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceE
Q 014104 280 TLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVL 353 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~ 353 (430)
..+|+|+|++++..+.++ .|.+||+.+++.. .+. +........ |+|||++++..+.+ +.|.++++. +...
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~-~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~ 415 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPS-FAPNGSMVLYATREGGRGVLAAVSTD-GRVR 415 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCce-ECCCCCEEEEEEecCCceEEEEEECC-CCce
Confidence 789999999998765433 6999999877654 333 222344556 99999988776643 468888885 4455
Q ss_pred EEEEe
Q 014104 354 SRCVM 358 (430)
Q Consensus 354 ~~~~~ 358 (430)
+.+..
T Consensus 416 ~~l~~ 420 (433)
T PRK04922 416 QRLVS 420 (433)
T ss_pred EEccc
Confidence 55544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-12 Score=106.65 Aligned_cols=288 Identities=13% Similarity=0.111 Sum_probs=188.4
Q ss_pred ceeEEEec-CC--eEEEEeCCCeEEEEecCCCeeEEeeec-CCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCccccc
Q 014104 114 GVDQCRMK-RG--LILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 114 ~v~~~~~~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~ 187 (430)
.|.-+.+. +. .|.....|+.|.+|++...+-...+.. +.+...++|+|||+.++ +..+-.|.+|.+.+......
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 34455553 33 556667899999999998888777775 46677899999998877 66688999999999988777
Q ss_pred CCCCceeeeeEEEEcCCceEEEecCCeEEEEECC---CCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---SRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 264 (430)
.+..+...++++.+++...+.++.-.....+++. .-..++.++..+-..+.+.|+|+. ..+.+||.--.
T Consensus 130 ~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg--------~~laVwd~~Le 201 (447)
T KOG4497|consen 130 PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG--------NWLAVWDNVLE 201 (447)
T ss_pred cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC--------cEEEEecchhh
Confidence 7777777888888888886666553221112221 223344555555567889999872 23446664322
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee----------------------------------
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL---------------------------------- 310 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---------------------------------- 310 (430)
-.+...+ -.-++..++|+|.+++|++|+.|+.+++.+--+-++.
T Consensus 202 ykv~aYe--~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf 279 (447)
T KOG4497|consen 202 YKVYAYE--RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSF 279 (447)
T ss_pred heeeeee--eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccccc
Confidence 2233333 3347899999999999999999999988654221100
Q ss_pred --------------------------eeee------cCCCceEEEEEeeCCCCeEEEEcC--CCeEEEEEcCCC------
Q 014104 311 --------------------------WETR------ISPNVVYSLQHLQNDTSTLVVGGI--DGVLRVLDQNTG------ 350 (430)
Q Consensus 311 --------------------------~~~~------~~~~~v~~l~~~s~~~~~l~s~~~--dg~i~vwd~~~~------ 350 (430)
..++ .....+--++ |++|..+++|-.. -+.+-+||++.-
T Consensus 280 ~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la-fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL 358 (447)
T KOG4497|consen 280 TPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA-FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL 358 (447)
T ss_pred CCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee-ecCCceEEeeecCCCCceEEEEechhhhhhhhh
Confidence 0000 0112345566 9999999988753 367999999854
Q ss_pred ---ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCe
Q 014104 351 ---EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKY 417 (430)
Q Consensus 351 ---~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~ 417 (430)
.+++.+.-+++.-.++.......++.|...- ......+. ..-.|..+.| +|..++-.+.|.-
T Consensus 359 iQk~piraf~WdP~~prL~vctg~srLY~W~psg----~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 359 IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG----PRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred hhccceeEEEeCCCCceEEEEcCCceEEEEcCCC----ceEEecCC-CCceeeeEEecCCCcEEEEEcCCce
Confidence 4577777777766666665555565544211 00111111 1136778888 5888988888853
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=125.40 Aligned_cols=271 Identities=15% Similarity=0.123 Sum_probs=175.4
Q ss_pred cccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEE----EecCCCEEE-EEeCCeEEEEEcCCCccc
Q 014104 111 HSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVD----FDFDESKIV-GLIGTRICIWRRNGLRSV 185 (430)
Q Consensus 111 h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~-~~~~~~i~vwd~~~~~~~ 185 (430)
|-+++.+..+-..+|+.|. .-.|.+||+..+..+..+..-.....-. ..-.+.+++ +..-+.+..=+.+.. .
T Consensus 6 ~~~~l~~~~~~~~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~--~ 82 (967)
T KOG0974|consen 6 SLGPLNLPQLVSDYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQ--I 82 (967)
T ss_pred ccccccchhhccceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhh--h
Confidence 3455566666446665444 4579999999877665443211110000 000112222 333333322221111 1
Q ss_pred ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-CeEE---EEecCC-CEEEEEeCCCeEEEEe
Q 014104 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-PVTS---LSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~---~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
.......+.. ..+......++.++.+..+.+||...+.....+..... ...+ +..+++ -++++|+.-+.|.+|+
T Consensus 83 ~~~~s~wi~g-~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 83 IERFSDWIFG-AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWK 161 (967)
T ss_pred hhhccccccc-cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEe
Confidence 1111111111 11222333488888899999999877766555542211 1111 122234 4789999999999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee-eeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW-ETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
....+.-..+.+ |.+.+..+.++-+|+++++.+.|.++++|++.+.+... ..-+|...|+.+. +.|+ .++|++.|
T Consensus 162 ~~~dn~p~~l~G-HeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~-~~~n--~i~t~ged 237 (967)
T KOG0974|consen 162 PHEDNKPIRLKG-HEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACC-FLPN--RIITVGED 237 (967)
T ss_pred ccccCCcceecc-cCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEE-eccc--eeEEeccc
Confidence 873333334555 99999999999999999999999999999999987766 6778999999998 8777 89999999
Q ss_pred CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCe
Q 014104 340 GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKY 417 (430)
Q Consensus 340 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~ 417 (430)
-+.++|+.. ++.+..+..|.. ..|..++.+ ...++|++.|+.
T Consensus 238 ctcrvW~~~-~~~l~~y~~h~g-----------------------------------~~iw~~~~~~~~~~~vT~g~Ds~ 281 (967)
T KOG0974|consen 238 CTCRVWGVN-GTQLEVYDEHSG-----------------------------------KGIWKIAVPIGVIIKVTGGNDST 281 (967)
T ss_pred eEEEEEecc-cceehhhhhhhh-----------------------------------cceeEEEEcCCceEEEeeccCcc
Confidence 999999755 666666666554 467877773 566899999999
Q ss_pred EEEEEecC
Q 014104 418 IRLWKFNY 425 (430)
Q Consensus 418 v~vw~~~~ 425 (430)
+++|++..
T Consensus 282 lk~~~l~~ 289 (967)
T KOG0974|consen 282 LKLWDLNG 289 (967)
T ss_pred hhhhhhhc
Confidence 99999753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.5e-12 Score=104.55 Aligned_cols=134 Identities=13% Similarity=0.220 Sum_probs=99.4
Q ss_pred EEEEECCCCeeeEEeec-CCCCeEEEEecCC-CEEE--EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEE
Q 014104 215 ARVFDMYSRKCSQIIRM-HCAPVTSLSLSED-QLII--SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 215 i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~--~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
+...+... ..+..+.. ..++|.+++|+|+ +.++ .|..++.|.+||++ ++.+..+. ...+..+.|+|+|++|
T Consensus 41 l~~~~~~~-~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 41 LFYLNEKN-IPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEecCC-CccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CCCceEEEECCCCCEE
Confidence 44444333 33444432 3457999999986 5543 34567899999996 67777764 3467899999999999
Q ss_pred EEEeC---CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC------CCeEEEEEcCCCceEEEEE
Q 014104 291 FAGTT---AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI------DGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 291 ~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~ 357 (430)
++++. .|.|.+||+++.+.+..... ..+..++ |+|+|++++++.. |+.++||+.. |+.+....
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~-WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVE-WSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred EEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEE-EcCCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 98864 46799999998888877653 3467887 9999999998874 7889999985 77776654
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.6e-13 Score=117.03 Aligned_cols=258 Identities=16% Similarity=0.219 Sum_probs=178.6
Q ss_pred EeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEE--EEcCCc--eEEEecCCeEEEEE
Q 014104 146 EEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCM--RYFDPE--AVVGCEDGTARVFD 219 (430)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~--l~~~~~dg~i~vwd 219 (430)
..+..| +.+..+.|...|..++ ++.|..|.+||...+...+....+|...++.- .++... +++++.||.|++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 344444 6677899999999999 88899999999999988877777776554433 333333 99999999999876
Q ss_pred CC-CCee--eEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEec--CCCC---CeEEEEEecCCC-
Q 014104 220 MY-SRKC--SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRS--TDCT---GIKTLCYNPCSR- 288 (430)
Q Consensus 220 ~~-~~~~--~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~---~v~~~~~~~~~~- 288 (430)
+. ++.+ ...+..|.++|.-++.-|+ ..|.+++.|+.+.-+|++++.+...+.. .+.. ....++.+|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 54 3332 3455679999999999886 6899999999999999998766444331 1233 577888888665
Q ss_pred EEEEEeCCCeEEEEeCCCCc------eeeeeecC------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 289 LVFAGTTAGYASCWDLRTMK------SLWETRIS------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 289 ~l~~~~~dg~i~i~d~~~~~------~~~~~~~~------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.+++|+.|..+++||.+.-. .+..+-.| .-.|++++ |+.++.-|.++-.|-.|+++.-..+.--...
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~-Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV-YSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE-ecCCccceeeeecccceEEeccccccCCCCC
Confidence 88899999999999987522 12222222 25689998 8877766666667888999954322110000
Q ss_pred EeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC--CCeeEEEE---cCeEEEEeeCCCeEEEEEecCCC
Q 014104 357 VMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR--PPITCLAV---GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 357 ~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~---~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
. .++. ........++|. ..|-++-| ...|+++||+=|.|.||+-.+++
T Consensus 375 ~----------~s~~-------------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 375 P----------SSPR-------------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred C----------Ccch-------------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhH
Confidence 0 0000 011122234555 34777877 36899999999999999988775
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-11 Score=113.57 Aligned_cols=220 Identities=13% Similarity=0.047 Sum_probs=135.9
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCCCcccccC-CCCceeeeeEEEEcCCce
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 206 (430)
..|.++|...............+...+|+|||+.|+ .+. ...|.+||+.+++..... ..+ ......+++++..+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEE
Confidence 467777875433333333445566789999999988 443 245999999988643222 222 22346777788776
Q ss_pred E-EEecCCeEEEE--ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEe--CCCCceeEEEecCCCCCeE
Q 014104 207 V-VGCEDGTARVF--DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISG--LSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 207 ~-~~~~dg~i~vw--d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd--~~~~~~~~~~~~~~~~~v~ 279 (430)
+ +.+.+|...+| |+.++. ...+..+.+......|+|+ +.++..+ .+|...+|. +.+++...... ......
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~--~g~~~~ 331 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTF--TGSYNT 331 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEec--CCCCcC
Confidence 5 56777775555 554444 4455555556677889976 6666554 345555554 44444322222 223344
Q ss_pred EEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC---eEEEEEcCCCceE
Q 014104 280 TLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG---VLRVLDQNTGEVL 353 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~ 353 (430)
...|+|+|++++..+.++ .|.+||+.+++... +..+ ....... |+|||+.|+..+.++ .+.+.++ +|...
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~-~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~ 407 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPS-FAPNGRYILYATQQGGRSVLAAVSS-DGRIK 407 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCce-ECCCCCEEEEEEecCCCEEEEEEEC-CCCce
Confidence 678999999998766554 69999998876543 3222 2335566 999999888777543 3556666 35555
Q ss_pred EEEEec
Q 014104 354 SRCVMD 359 (430)
Q Consensus 354 ~~~~~~ 359 (430)
..+..+
T Consensus 408 ~~l~~~ 413 (427)
T PRK02889 408 QRLSVQ 413 (427)
T ss_pred EEeecC
Confidence 555443
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-11 Score=113.25 Aligned_cols=216 Identities=12% Similarity=-0.002 Sum_probs=141.2
Q ss_pred EEeccccceeEEEe-cCC-eEEEEe---CCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCC--eEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGV---GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~--~i~vw 177 (430)
.+..+...+.+.+| ||| .|+..+ .+..|.+||+.+++.......+.......|+|||+.|+ . ..++ .|.+|
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~ 272 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 272 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEE
Confidence 34445567788888 566 666543 24579999999886544333334445689999999988 3 3344 58899
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecC-C--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED-G--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
|+++++...............|++++..|+..+.+ + .|.++|+.+++. ..+..+........|+|+ +.++..+.+
T Consensus 273 d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 273 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred ECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 99887643222222233456777888877766654 4 455557766654 334434445667889986 666665433
Q ss_pred ---CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe---EEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 254 ---GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY---ASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 254 ---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
..|.+||+.+++.. .+.. ........|+|||+.|+.++.++. +.++++. ++....+..|.+.+...+ |+
T Consensus 352 ~g~~~I~~~dl~~g~~~-~Lt~--~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~-Ws 426 (429)
T PRK03629 352 GGQQHIAKQDLATGGVQ-VLTD--TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPA-WS 426 (429)
T ss_pred CCCceEEEEECCCCCeE-EeCC--CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcc-cC
Confidence 35889999887643 3432 123346789999999998887764 6777774 666667777777787777 76
Q ss_pred C
Q 014104 328 N 328 (430)
Q Consensus 328 ~ 328 (430)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 6
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-10 Score=98.92 Aligned_cols=232 Identities=11% Similarity=0.130 Sum_probs=152.6
Q ss_pred ceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCE-EEEEeCCeEEEEEcCCCc-----
Q 014104 114 GVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESK-IVGLIGTRICIWRRNGLR----- 183 (430)
Q Consensus 114 ~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~-l~~~~~~~i~vwd~~~~~----- 183 (430)
.+..++++.. .++++..|-.|++||-.. ++...++. ...+.+++|-|.+.. ++.+..+.|.+|..+...
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~ 178 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN 178 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc
Confidence 3455666544 678899999999999766 55555554 356788999996654 557778889999876321
Q ss_pred ---------ccccCCCCceeeeeEEEEcCCceEEEec-CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 184 ---------SVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 184 ---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
.++.......+..+.+..++..+++++. |..|.|||..++..+.....-.+.+.-+.|+|+ +++.+++-
T Consensus 179 ~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~ 258 (445)
T KOG2139|consen 179 IRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC 258 (445)
T ss_pred cccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence 1222222333455566666666888775 578999999999887666445678899999987 89999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-c--------------eeeeee---
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-K--------------SLWETR--- 314 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-~--------------~~~~~~--- 314 (430)
|+..++|+............ ..+.|...+|+|+|++|..... |.-++|.+.-. + ++..+.
T Consensus 259 davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t 336 (445)
T KOG2139|consen 259 DAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT 336 (445)
T ss_pred cceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhh
Confidence 99999996543322222222 3458999999999997765433 22344444211 0 011110
Q ss_pred ---c---CCCceEEEEEeeCCCCeEEEEcCCC--------eEEEEEcCC
Q 014104 315 ---I---SPNVVYSLQHLQNDTSTLVVGGIDG--------VLRVLDQNT 349 (430)
Q Consensus 315 ---~---~~~~v~~l~~~s~~~~~l~s~~~dg--------~i~vwd~~~ 349 (430)
+ -.+...+++ +.|.|.+|++.-..+ .|.+||.+.
T Consensus 337 i~ag~~l~cgeaq~la-wDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 337 ICAGQRLCCGEAQCLA-WDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred hhcCcccccCccceee-ECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 1 125677888 899999988765433 356666653
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=123.14 Aligned_cols=187 Identities=15% Similarity=0.109 Sum_probs=149.9
Q ss_pred EEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeE--EEEcCCc---eEEEecCCeEEEEECCCCeeeEEee
Q 014104 157 VDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLC--MRYFDPE---AVVGCEDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 157 ~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~---l~~~~~dg~i~vwd~~~~~~~~~~~ 230 (430)
..+..+...++ .+.++.+.+||...+...............+ ...++.. +++|+.-+.|.+|+....+.-..+.
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 44555666666 8999999999999887666655554433222 2223333 8889999999999987444434688
Q ss_pred cCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeE-EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 231 MHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVA-TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 231 ~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
+|.+.|.++.++ ++.++++.|+|.++++|++.+++... ...+ |...|..++|.|+ .+++++.|-+.++|+.. ++
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-HsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~ 248 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-HSARVWACCFLPN--RIITVGEDCTCRVWGVN-GT 248 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-ccceeEEEEeccc--eeEEeccceEEEEEecc-cc
Confidence 999999999999 45899999999999999999988876 4444 8999999999987 89999999999999765 55
Q ss_pred eeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 309 SLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 309 ~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+..+.+|. ..+..++ .+++...++|++.||.+++||+.
T Consensus 249 ~l~~y~~h~g~~iw~~~-~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 249 QLEVYDEHSGKGIWKIA-VPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred eehhhhhhhhcceeEEE-EcCCceEEEeeccCcchhhhhhh
Confidence 566888886 6788988 88888999999999999999986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.2e-11 Score=110.75 Aligned_cols=215 Identities=11% Similarity=-0.020 Sum_probs=140.2
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (430)
..|.++|.++........+...+...+|+|||+.|+ .+. +..|.+||+.+++...............+++++..++
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 378888986654433333445677799999999988 442 4689999998876432222222233467778887754
Q ss_pred -EEecCCe--EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-CC--eEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 208 -VGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 208 -~~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
+.+.++. |.+||+.+++. ..+..+.+......|+|+ +.++..+. +| .|.++|+..++.. .+.. ....+..
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~-~~~~~~~ 338 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF-GGGRYST 338 (435)
T ss_pred EEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec-CCCcccC
Confidence 5555554 77889987765 445556666778899976 66666553 33 6888898766543 3432 3445677
Q ss_pred EEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC------CeEEEEEcCCCc
Q 014104 281 LCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID------GVLRVLDQNTGE 351 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d------g~i~vwd~~~~~ 351 (430)
..|+|+|+.|+....+ ..|.+||+..+.. ..+.. ...+.... |+|||+.|+..+.+ ..++++|+..+.
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~-~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPT-WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCe-ECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 8899999999876543 3688889865443 23322 22456677 99999988765532 357888876544
Q ss_pred e
Q 014104 352 V 352 (430)
Q Consensus 352 ~ 352 (430)
.
T Consensus 416 ~ 416 (435)
T PRK05137 416 E 416 (435)
T ss_pred e
Confidence 3
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=111.12 Aligned_cols=206 Identities=11% Similarity=0.095 Sum_probs=149.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD 203 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (430)
++|....||.+++||..+++....|..... .+..+.-..|.+.-+......... ......+.+.
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--------------~s~t~~~~~w~L~~~~s~~k~~~~--~~~~~~s~~t 70 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIAS--------------LSGTCTYTKWGLSADYSPMKWLSL--EKAKKASLDT 70 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchh--------------ccCcceeEEEEEEeccchHHHHhH--HHHhhccCCc
Confidence 899999999999999999888776653100 111122223332211100000000 0000011111
Q ss_pred CceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 204 PEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 204 ~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
..++-|...|.|.+|+...|+.-..+. .|.+.|.++.++.+ ..|.+++.|+.+..|+...++.++.+.. ....+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-QKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-CCCccce
Confidence 127888899999999999998877775 68899999999866 8999999999999999999999988887 6678999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC-----CCeEEEE-cCCCeEEEEEcCC
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND-----TSTLVVG-GIDGVLRVLDQNT 349 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~-----~~~l~s~-~~dg~i~vwd~~~ 349 (430)
++.+|||..+++++ +.|++||+.+++.+..+.+|.++|.++. |..+ |.+++++ ..+.-+.+|-++.
T Consensus 150 l~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~-f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 150 LCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLS-FTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEE-EEEeccccccceeeeccccccceeEEEEEc
Confidence 99999999999886 5699999999999999999999999999 6665 5666554 3555677776653
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-13 Score=120.03 Aligned_cols=169 Identities=15% Similarity=0.174 Sum_probs=130.7
Q ss_pred eEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEE
Q 014104 226 SQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC--SRLVFAGTTAGYASCW 302 (430)
Q Consensus 226 ~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~ 302 (430)
...+.+|++.|++++|+ ++.+|++|++|-.+.|||.-..+.+..+..+|...|.++.|-|. .+.+++|..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 35788999999999999 55999999999999999999899999998889999999999984 4688899999999999
Q ss_pred eCCC----------CceeeeeecCCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCC
Q 014104 303 DLRT----------MKSLWETRISPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVS 371 (430)
Q Consensus 303 d~~~----------~~~~~~~~~~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d 371 (430)
|+.. .+....+..|...|..++ ..|++ ..+.+++.||+|+-+|++.......-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria-~~p~~PhtfwsasEDGtirQyDiREph~c~p~~-------------- 187 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIA-TAPNGPHTFWSASEDGTIRQYDIREPHVCNPDE-------------- 187 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhhee-cCCCCCceEEEecCCcceeeecccCCccCCccc--------------
Confidence 9984 234456778889999998 77888 688999999999999998532111000
Q ss_pred ceEEEeecccccCCcccccCCCCCC--CCeeEEEE---cCeEEEEeeCCCeEEEEEe
Q 014104 372 GVIERNEGRRLSAGCCIDRIPKTIR--PPITCLAV---GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 372 ~~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~v~~---~~~~l~t~~~Dg~v~vw~~ 423 (430)
.+ ...+...+. -...|+.+ +..+|+.|+.|--.++||.
T Consensus 188 -~~-------------~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 188 -DC-------------PSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred -cc-------------cHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 00 000000000 13445565 4788999999999999994
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=101.58 Aligned_cols=128 Identities=15% Similarity=0.247 Sum_probs=93.5
Q ss_pred eEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 255 SIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 255 ~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
...+|.++ .+.....+.....++|.+++|+|+|+.|++ |..++.|.+||++ ++.+..+. ...+..+. |+|+|+
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~-wsP~G~ 113 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTIS-WSPDGR 113 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEE-ECCCCC
Confidence 34444442 233444554334557999999999998764 4457799999997 66666664 45678888 999999
Q ss_pred eEEEEcC---CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cC
Q 014104 332 TLVVGGI---DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GM 406 (430)
Q Consensus 332 ~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~ 406 (430)
+|++++. .|.|.+||+++.+.+..... ..++.++| ||
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--------------------------------------~~~t~~~WsPdG 155 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEH--------------------------------------SDATDVEWSPDG 155 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeecccc--------------------------------------CcEEEEEEcCCC
Confidence 9999874 46799999998877766532 24567777 58
Q ss_pred eEEEEeeC------CCeEEEEEec
Q 014104 407 KKVVTTHN------SKYIRLWKFN 424 (430)
Q Consensus 407 ~~l~t~~~------Dg~v~vw~~~ 424 (430)
++++|++. |+.++||++.
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CEEEEEEeccceeccccEEEEEec
Confidence 88888764 7899999985
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.1e-11 Score=112.03 Aligned_cols=218 Identities=11% Similarity=-0.032 Sum_probs=139.0
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeC---CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCC--eEE
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVG---DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGT--RIC 175 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~--~i~ 175 (430)
.+.+..|...+.+.+| +++ .|+..+. +..|.+||+.+++........+......|+|||+.++ .+.++ .|.
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy 275 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIY 275 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEE
Confidence 3445666777888888 566 7776664 3479999998877644333333344689999999887 34444 599
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CCe--EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+||+.+++..............++++++..++.++. +|. |+++|+.+++... +..+.......+|+|+ +.++..+
T Consensus 276 ~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 276 VMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEE
Confidence 999988764322222222334677777777776653 444 7777877765432 3223344557899976 6666654
Q ss_pred CCC---eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 252 SLG---SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 252 ~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
.++ .|.+||+.+++.. .+. +........|+|+|++++..+.+ +.|.++++. +.....+..+.+.+...+
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~- 429 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPA- 429 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCc-
Confidence 332 6999999887754 343 22244567899999988766553 458888885 444555555555566665
Q ss_pred eeC
Q 014104 326 LQN 328 (430)
Q Consensus 326 ~s~ 328 (430)
|+|
T Consensus 430 wsp 432 (433)
T PRK04922 430 WSP 432 (433)
T ss_pred cCC
Confidence 655
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-09 Score=93.80 Aligned_cols=251 Identities=13% Similarity=0.088 Sum_probs=163.5
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-E---------eCCeEEEEEcCCCcccccCCC--------Cc
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-L---------IGTRICIWRRNGLRSVFPSRE--------GT 192 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~---------~~~~i~vwd~~~~~~~~~~~~--------~~ 192 (430)
++|.+.|..+++.+.++........+ ++||++.++ + + .+..|.+||..+.+.+-.... +.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~ 105 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGT 105 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccC
Confidence 89999999999999999876555555 999999888 3 3 468999999999886533322 22
Q ss_pred eeeeeEEEEcCCceEEEe-c-CCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC-Ccee-E
Q 014104 193 FMKGLCMRYFDPEAVVGC-E-DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-DQRV-A 268 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-~ 268 (430)
....+.+++++..+++.. . +..|.+.|+.+++.+..+... +...-+..+++..+ +-+.||......+.+ |+.. .
T Consensus 106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t~e~~~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPTANDTFF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEecCCccE-EEeecCceEEEEecCCCceEEe
Confidence 233577888888877766 3 689999999999999888742 22233333333333 333455544433332 2211 1
Q ss_pred E---EecCC----CCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCC-----ceeeeeec-------CCCceEEEEEeeC
Q 014104 269 T---LRSTD----CTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTM-----KSLWETRI-------SPNVVYSLQHLQN 328 (430)
Q Consensus 269 ~---~~~~~----~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~-------~~~~v~~l~~~s~ 328 (430)
. +.... ..+ .|.+ +|+++++... |+|++.|+... +....+.. ..+....++ +++
T Consensus 184 ~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia-~~~ 257 (352)
T TIGR02658 184 PTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA-YHR 257 (352)
T ss_pred eeeeecCCccccccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEE-EcC
Confidence 1 11100 112 4455 8888887766 99999996432 22222211 223344477 999
Q ss_pred CCCeEEEEc----------CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 329 DTSTLVVGG----------IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 329 ~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
+++.+++.. ..+.|.++|..+++.+..+.... .
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-------------------------------------~ 300 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-------------------------------------E 300 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-------------------------------------c
Confidence 999888743 22589999999999999887522 4
Q ss_pred eeEEEE--cCe-EEE-EeeCCCeEEEEEecCCCc
Q 014104 399 ITCLAV--GMK-KVV-TTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 399 v~~v~~--~~~-~l~-t~~~Dg~v~vw~~~~~~~ 428 (430)
+..+++ |++ +|+ +...++.|.+.|..+++.
T Consensus 301 ~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 301 IDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred eeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 556666 455 555 444688899999988764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-11 Score=101.77 Aligned_cols=180 Identities=17% Similarity=0.173 Sum_probs=126.2
Q ss_pred eeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCC----ee-
Q 014104 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSR----KC- 225 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~----~~- 225 (430)
...++|++.-..++ +..|..|++||-+.... .++......+..+++.+.+.. +++|+.. -|.+|..... ..
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~ 179 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNI 179 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccccccc
Confidence 44566766444445 88899999999887442 344444555666777776665 7777765 5889975421 11
Q ss_pred ---------eEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 014104 226 ---------SQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 226 ---------~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
+....+| .+|++|.|+++ ..+++++ .|..|.+||..++..+.-... ..+.+.-+.|+|||.+|+++.
T Consensus 180 ~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 180 RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-GLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred ccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-CCCceeeEEEcCCCCEEEEec
Confidence 1122344 58999999976 6777776 567899999999887655533 456899999999999999999
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 295 TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 295 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
-|+..++|+..............+.|.... |+|+|++|+-..
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtac-WspcGsfLLf~~ 299 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTAC-WSPCGSFLLFAC 299 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeee-ecCCCCEEEEEE
Confidence 999999996654333333333446888887 999999775443
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.5e-11 Score=106.89 Aligned_cols=181 Identities=16% Similarity=0.173 Sum_probs=146.6
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecC---CCCeEEEEec------C--------------C-CEEEEEeCCCeEEEEeC
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMH---CAPVTSLSLS------E--------------D-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~~------~--------------~-~~l~~~~~dg~i~vwd~ 261 (430)
++....||.+++||...++....+... .+..++..|. | + ..++-|...|.|.+++.
T Consensus 8 ~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~ 87 (541)
T KOG4547|consen 8 FALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSV 87 (541)
T ss_pred EeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEe
Confidence 788889999999999988776665421 2233333331 1 2 46888999999999999
Q ss_pred CCCceeEEEe-cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 262 SSDQRVATLR-STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 262 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
..|+...++. +.|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+.+....+.+++ ++|||..+++++ +
T Consensus 88 ~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~-is~D~~~l~~as--~ 164 (541)
T KOG4547|consen 88 AGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLC-ISPDGKILLTAS--R 164 (541)
T ss_pred cCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEE-EcCCCCEEEecc--c
Confidence 9999988887 66889999999998888999999999999999999999999998888999998 999999999886 5
Q ss_pred eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c-----CeEE-EEe
Q 014104 341 VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G-----MKKV-VTT 412 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~-----~~~l-~t~ 412 (430)
.|++||+++++.+..|.+|.+ +|.+++| + |.++ .++
T Consensus 165 ~ik~~~~~~kevv~~ftgh~s------------------------------------~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 165 QIKVLDIETKEVVITFTGHGS------------------------------------PVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred eEEEEEccCceEEEEecCCCc------------------------------------ceEEEEEEEeccccccceeeecc
Confidence 899999999999999987555 7777777 2 4554 445
Q ss_pred eCCCeEEEEEecC
Q 014104 413 HNSKYIRLWKFNY 425 (430)
Q Consensus 413 ~~Dg~v~vw~~~~ 425 (430)
..+..+.+|.+..
T Consensus 209 ~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 209 AAERGITVWVVEK 221 (541)
T ss_pred ccccceeEEEEEc
Confidence 5566678887754
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-10 Score=104.28 Aligned_cols=261 Identities=12% Similarity=0.057 Sum_probs=169.9
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCcee----e
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFM----K 195 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~----~ 195 (430)
..++.++.++.+|.+..+|.++|+.+.....+......-.-.++..++++.++.+.-+|.++++.++........ .
T Consensus 118 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 118 VAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 345677888899999999999999988877654332211122454555888899999999999876544322100 0
Q ss_pred eeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-------CeEEEEecC---CCEEEEEeCCCeEEEEeCCCCc
Q 014104 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-------PVTSLSLSE---DQLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~i~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~ 265 (430)
...-...+..++.++.+|.+..+|..+|+.+........ ....+..+| ++.++.++.+|.+..+|..+|+
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~ 277 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ 277 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC
Confidence 001111234477888899999999999987765532110 011111122 4567778889999999999999
Q ss_pred eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 266 RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
.+.+... . ....+.. .+..++.++.+|.+..+|..+++.+.....-. ....+.. . .+.+|+.++.+|.|++
T Consensus 278 ~~W~~~~--~-~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~-v--~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 278 IVWKREY--G-SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV-L--YNGYLVVGDSEGYLHW 349 (394)
T ss_pred EEEeecC--C-CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE-E--ECCEEEEEeCCCEEEE
Confidence 8776542 1 1222222 45678888899999999999998876543211 1122222 2 2567888899999999
Q ss_pred EEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEe
Q 014104 345 LDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 345 wd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~ 423 (430)
.|..+|+.+.+...... .......+.+..|+.++.||.|..++.
T Consensus 350 ld~~tG~~~~~~~~~~~-----------------------------------~~~s~P~~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 350 INREDGRFVAQQKVDSS-----------------------------------GFLSEPVVADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EECCCCCEEEEEEcCCC-----------------------------------cceeCCEEECCEEEEEeCCceEEEEeC
Confidence 99999998887764322 011122234557888899999887764
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.6e-10 Score=102.60 Aligned_cols=232 Identities=13% Similarity=0.104 Sum_probs=150.5
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCcee--------EEE--EecCCCE-EEEEeCCeEEEEEcCCCccccc
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS--------LVD--FDFDESK-IVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~-l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
.+.++.+++++.+|.+.-+|..+|+.+.......... .+. ...++.. ++++.++.+.-+|.++++..+.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 3457788888899999999999999887766433110 000 1113344 4478889999999999987765
Q ss_pred CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEE-EEecC---CCEEEEEeCCCeEEEEeCCC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS-LSLSE---DQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-~~~~~---~~~l~~~~~dg~i~vwd~~~ 263 (430)
........ ......+..++++..+|.+..+|.++|+.+..+......+.. ..-+| ++.++.++.+|.+..+|..+
T Consensus 146 ~~~~~~~~-ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~ 224 (394)
T PRK11138 146 TKVAGEAL-SRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQ 224 (394)
T ss_pred ccCCCcee-cCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccC
Confidence 54332211 111123455778888999999999999998877643111100 00112 34677788899999999999
Q ss_pred CceeEEEecCCCC------CeEEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 264 DQRVATLRSTDCT------GIKTLCYNP--CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 264 ~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
|+.+......... ....+..+| .+..++.++.+|.+..+|..+++.+.+.... ....+. ..+..++.
T Consensus 225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~---~~~~~vy~ 299 (394)
T PRK11138 225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA---VDGGRIYL 299 (394)
T ss_pred ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE---EECCEEEE
Confidence 9887665421110 001111122 3456777788999999999999888765422 112222 24567888
Q ss_pred EcCCCeEEEEEcCCCceEEEE
Q 014104 336 GGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~~~~~ 356 (430)
++.+|.+..+|..+|+.+...
T Consensus 300 ~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 300 VDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EcCCCeEEEEECCCCcEEEcc
Confidence 889999999999999876543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-10 Score=101.23 Aligned_cols=267 Identities=12% Similarity=0.138 Sum_probs=161.7
Q ss_pred ceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEE------EeC-----CeEEEEEcCC
Q 014104 114 GVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG------LIG-----TRICIWRRNG 181 (430)
Q Consensus 114 ~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~-----~~i~vwd~~~ 181 (430)
+++..++ ++|.+..-+.+..++|++..++..+.+.... ....+.|+|.+.+|.. ..+ -.+.+|++++
T Consensus 36 ~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet 114 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET 114 (566)
T ss_pred cceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeecc
Confidence 3455556 4567777888899999999988766555554 6777999999988752 222 3477999998
Q ss_pred CcccccCCCCcee-eeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC----------------
Q 014104 182 LRSVFPSREGTFM-KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---------------- 244 (430)
Q Consensus 182 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---------------- 244 (430)
+............ ....++.+.. +++--..+.+++|++...+.+. -+-|...|+.+.++|+
T Consensus 115 ~~~~s~~q~k~Q~~W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 115 GVQRSQIQKKMQNGWVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred ceehhheehhhhcCcccccccchh-hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 5433222111111 1222222222 2222334567777765422111 1112233333333332
Q ss_pred --------------------------------------CEEEEEe--CC---------CeEEEEeCCCCceeEEEecCCC
Q 014104 245 --------------------------------------QLIISGS--SL---------GSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 245 --------------------------------------~~l~~~~--~d---------g~i~vwd~~~~~~~~~~~~~~~ 275 (430)
.+|+.++ -| .++++.++....+...+. ..
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~--k~ 270 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL--KE 270 (566)
T ss_pred CcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC--CC
Confidence 1222221 11 244444444223333333 46
Q ss_pred CCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC---CCeEEEEEcCCC
Q 014104 276 TGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI---DGVLRVLDQNTG 350 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~---dg~i~vwd~~~~ 350 (430)
++|.++.|+|+|+-+++ |-.-..+.|||++ +.++..+. .++-+.+- |+|.|++++.++- .|.|-|||+.+.
T Consensus 271 GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~-fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 271 GPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAF-FNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred CCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceE-ECCCCCEEEEeecCCCCCceEEEeccch
Confidence 79999999999987664 5567789999998 66776554 35556665 9999999988774 488999999998
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeC------CCeEEEEEec
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHN------SKYIRLWKFN 424 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~------Dg~v~vw~~~ 424 (430)
+++..+..... .+..-+.||++++|+.. |+.++||++.
T Consensus 347 K~i~~~~a~~t------------------------------------t~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 347 KLIAKFKAANT------------------------------------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hhccccccCCc------------------------------------eEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 88888765332 22222227888877765 6889999976
Q ss_pred C
Q 014104 425 Y 425 (430)
Q Consensus 425 ~ 425 (430)
.
T Consensus 391 G 391 (566)
T KOG2315|consen 391 G 391 (566)
T ss_pred C
Confidence 3
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-10 Score=95.45 Aligned_cols=217 Identities=14% Similarity=0.178 Sum_probs=143.1
Q ss_pred CCeEEEEecCCCeeEE--eee--cCCceeEEEEec---CCC-EEE-EEeCCeEEEEEcCCCcc--cccCCCCcee-----
Q 014104 131 DKVMRLWSLEGYKCVE--EYS--LPNAASLVDFDF---DES-KIV-GLIGTRICIWRRNGLRS--VFPSREGTFM----- 194 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~--~~~--~~~~~~~~~~~~---~~~-~l~-~~~~~~i~vwd~~~~~~--~~~~~~~~~~----- 194 (430)
-|.+.+|++...+... ++. .+.+...+.|.. ++. .++ +-..|.|.++.....+. .+........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 3677888877655433 222 123444455543 444 233 77789999998765432 2222222211
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCCCee--eEEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCC-CCceeEE
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLS-SDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~-~~~~~~~ 269 (430)
-.+.+...+..++++-.+|.+.+.+...... ++..+.|.-+.+..+|+. + +++++|++|+.+..||++ .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 1233444556699999999999666544433 447889999999999983 2 799999999999999999 4455554
Q ss_pred EecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCC--eEEEEcCCCeEEEE
Q 014104 270 LRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTS--TLVVGGIDGVLRVL 345 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~--~l~s~~~dg~i~vw 345 (430)
-...|...|.++.-+| .+.++++|+.|..|++||.++ ++++..-.. .+.|+.+. .+|.-. .|+++-.+| .+|-
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GGVWRi~-~~p~~~~~lL~~CMh~G-~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGGVWRIK-HHPEIFHRLLAACMHNG-AKIL 281 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccceEEEE-ecchhhhHHHHHHHhcC-ceEE
Confidence 2333777899988875 467999999999999999995 677765443 37899998 766433 344443333 5666
Q ss_pred EcCCC
Q 014104 346 DQNTG 350 (430)
Q Consensus 346 d~~~~ 350 (430)
+...+
T Consensus 282 ~~~~~ 286 (339)
T KOG0280|consen 282 DSSDK 286 (339)
T ss_pred Eeccc
Confidence 65543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.1e-10 Score=104.39 Aligned_cols=218 Identities=14% Similarity=0.045 Sum_probs=138.2
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC---CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCce
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l 206 (430)
..|.++|....................|+||++.|+ +... ..|.+||+.+++.. .....+. .....+.+++..+
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~-~~~~~~spDg~~l 248 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGM-NGAPAFSPDGSKL 248 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCC-ccceEECCCCCEE
Confidence 367888876544433333334466688999999998 4432 47999999887533 2222222 2346677777765
Q ss_pred E-EEecCC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-CC--eEEEEeCCCCceeEEEecCCCCCeE
Q 014104 207 V-VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 207 ~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
+ +.+.++ .|++||+.+++.. .+..+........|+|+ +.++..+. ++ .|.++|+.+++.. .+.. +...+.
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~-~~~~~~ 325 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF-RGGYNA 325 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CCCCcc
Confidence 5 444444 5889999877543 34445455556788876 66665543 33 6888898876643 3332 344677
Q ss_pred EEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC---eEEEEEcCCCceE
Q 014104 280 TLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG---VLRVLDQNTGEVL 353 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~ 353 (430)
...|+|+|++++.++.++ .|.+||+.++... .+... ....... |+|+|++|+..+.++ .+++.+.. +...
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~-~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~ 401 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPS-FAPNGRMILYATTRGGRGVLGLVSTD-GRFR 401 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCce-ECCCCCEEEEEEeCCCcEEEEEEECC-Ccee
Confidence 889999999999887765 7999999875432 22222 2233445 899999888777553 45555543 5544
Q ss_pred EEEE
Q 014104 354 SRCV 357 (430)
Q Consensus 354 ~~~~ 357 (430)
..+.
T Consensus 402 ~~~~ 405 (417)
T TIGR02800 402 ARLP 405 (417)
T ss_pred eECC
Confidence 4443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-08 Score=90.91 Aligned_cols=264 Identities=12% Similarity=0.149 Sum_probs=163.3
Q ss_pred EEEEeCC----CeEEEEec--CCCee--EEeeecCCceeEEEEecCCCEEEEE-e----CCeEEEEEcCCC--cccc--c
Q 014104 125 ILTGVGD----KVMRLWSL--EGYKC--VEEYSLPNAASLVDFDFDESKIVGL-I----GTRICIWRRNGL--RSVF--P 187 (430)
Q Consensus 125 l~s~~~d----g~i~iwd~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~~i~vwd~~~~--~~~~--~ 187 (430)
++.|+.. +.|.+|++ ++++. +..+........++++++++.|++. . ++.|..|++... .... .
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4566665 78998887 45544 3344455667779999999999843 3 468999988764 3211 1
Q ss_pred CC-CCceeeeeEEEEcCCceEEEe-cCCeEEEEECCC-CeeeEE---ee----------cCCCCeEEEEecCC-CEEEEE
Q 014104 188 SR-EGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYS-RKCSQI---IR----------MHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 188 ~~-~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~~~~~~~-~~l~~~ 250 (430)
.. .+.....+++.+++..++++. .+|.|.++++.. +..... +. .......++.++|+ +++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 11 222222344445666666665 589999999976 433222 21 11235688999987 655554
Q ss_pred e-CCCeEEEEeCCCCc--e--eEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCC--CCc--eeeeeecC----
Q 014104 251 S-SLGSIAISGLSSDQ--R--VATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLR--TMK--SLWETRIS---- 316 (430)
Q Consensus 251 ~-~dg~i~vwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~~--~~~~~~~~---- 316 (430)
. ....|.+|++.... . ...+........+.+.|+|+++++++.. .++.|.+|++. +++ .+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 3 44589999987654 3 2334433566899999999999887655 47789999988 332 22222211
Q ss_pred --CCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcC--CCce--EEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 317 --PNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQN--TGEV--LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 317 --~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~--~~~~--~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
......+. ++|||++|+++. ..+.|.+|++. +|++ +..+....
T Consensus 242 ~~~~~~~~i~-ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G----------------------------- 291 (345)
T PF10282_consen 242 TGENAPAEIA-ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG----------------------------- 291 (345)
T ss_dssp CSSSSEEEEE-E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS-----------------------------
T ss_pred cccCCceeEE-EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC-----------------------------
Confidence 12567787 999999887765 66789999993 3443 22222111
Q ss_pred cCCCCCCCCeeEEEE--cCeEEEEee-CCCeEEEEEecC
Q 014104 390 RIPKTIRPPITCLAV--GMKKVVTTH-NSKYIRLWKFNY 425 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~--~~~~l~t~~-~Dg~v~vw~~~~ 425 (430)
..-..+++ +|++|+++. .++.|.+|+++.
T Consensus 292 -------~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 292 -------KFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp -------SSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred -------CCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 12456666 688776665 677999998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-13 Score=81.94 Aligned_cols=46 Identities=41% Similarity=0.577 Sum_probs=40.9
Q ss_pred ccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHH
Q 014104 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC 69 (430)
Q Consensus 24 ~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~ 69 (430)
+..||+|++.+||+||++.|+.++++|||.|+.++.++.+|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 4689999999999999999999999999999999998899999874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-10 Score=105.12 Aligned_cols=217 Identities=14% Similarity=0.004 Sum_probs=138.7
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeC---CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCC--eEE
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVG---DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RIC 175 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~--~i~ 175 (430)
.+.+..|...+.+..| +|| .|+..+. +..|.+||+.+++........+.....+|+|||+.|+ . ..++ .|.
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 3456778888999999 566 6666553 4689999999887644333344555689999999887 3 3344 477
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+||++++................+++++..++..+. +| .|+++|+.+++.. .+..+.+.+....|+|+ +.++..+
T Consensus 274 ~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 274 TMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred EEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCcccCeEECCCCCEEEEEE
Confidence 889887764322222233344677788877776653 33 6888898766543 44334556677889976 6666654
Q ss_pred CC---CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEEeCCCCceeeeeecCCCceEE
Q 014104 252 SL---GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA------GYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 252 ~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
.+ ..|.+||+..+. ...+.. ...+....|+|||+.|+..+.+ ..++++|+..+.. ..+. ..+.+..
T Consensus 353 ~~~~~~~i~~~d~~~~~-~~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~ 427 (435)
T PRK05137 353 QGGGQFSIGVMKPDGSG-ERILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASD 427 (435)
T ss_pred cCCCceEEEEEECCCCc-eEeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccC
Confidence 33 368889986544 344432 2356788999999988765442 3588888865443 3333 2333444
Q ss_pred EEEeeC
Q 014104 323 LQHLQN 328 (430)
Q Consensus 323 l~~~s~ 328 (430)
.+ |+|
T Consensus 428 p~-Wsp 432 (435)
T PRK05137 428 PA-WSP 432 (435)
T ss_pred cc-cCC
Confidence 44 554
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.9e-09 Score=92.75 Aligned_cols=222 Identities=14% Similarity=0.145 Sum_probs=142.2
Q ss_pred CCCeEEEEecCCCeeEEeeecCCcee--------EEEEecCCCEEEEEe---CCeEEEEEcCCCcccccCCCCceeeeeE
Q 014104 130 GDKVMRLWSLEGYKCVEEYSLPNAAS--------LVDFDFDESKIVGLI---GTRICIWRRNGLRSVFPSREGTFMKGLC 198 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~ 198 (430)
.+..|.+||..+++.+..+..+.... .+++++||+.++... ++.|.+.|+.+++.+..........++.
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~ 154 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFP 154 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEE
Confidence 47899999999999999998754433 799999999988333 7899999999988654333222111111
Q ss_pred EEEcCCceEEEecCCeEEEEECCC-Ceee-EE---eecCCCCeEE-EEecC-C-CEEEEEeCCCeEEEEeCCC-----Cc
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYS-RKCS-QI---IRMHCAPVTS-LSLSE-D-QLIISGSSLGSIAISGLSS-----DQ 265 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~-~~~~-~~---~~~~~~~i~~-~~~~~-~-~~l~~~~~dg~i~vwd~~~-----~~ 265 (430)
.......+-+.||......+.+ |+.. .. +.....++.. -.+.+ + ..+..... |+|.+.|+.. ..
T Consensus 155 --t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~ 231 (352)
T TIGR02658 155 --TANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP 231 (352)
T ss_pred --ecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc
Confidence 1111133344555554433322 2211 11 1110011100 02333 4 45544444 9999999643 23
Q ss_pred eeEEEecC------CCCCeEEEEEecCCCEEEEEe----------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 266 RVATLRST------DCTGIKTLCYNPCSRLVFAGT----------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 266 ~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
....+... ..+...-++++|+++.+++.. ..+.|.++|..+++.+..+... ..+..++ ++||
T Consensus 232 ~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~ia-vS~D 309 (352)
T TIGR02658 232 AIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSIN-VSQD 309 (352)
T ss_pred eeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEE-ECCC
Confidence 23322211 223445599999999888743 2247999999999999888753 5788998 9999
Q ss_pred CC-eEEEEc-CCCeEEEEEcCCCceEEEE
Q 014104 330 TS-TLVVGG-IDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 330 ~~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 356 (430)
++ +|++.. .++.|.+.|+.+++.++++
T Consensus 310 gkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 310 AKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 99 887666 6788999999999999998
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-09 Score=89.85 Aligned_cols=216 Identities=19% Similarity=0.177 Sum_probs=144.9
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeE-E-EEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASL-V-DFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (430)
+|+|..||..+|+.+........... . ...+++..++ +..++.+..||..+++.++........... ....+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeecccccc
Confidence 68999999999999988876321222 2 1333555555 779999999999999866544332221111 244566688
Q ss_pred EEecCCeEEEEECCCCeeeEEe-ecCCC-----CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC----
Q 014104 208 VGCEDGTARVFDMYSRKCSQII-RMHCA-----PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG---- 277 (430)
Q Consensus 208 ~~~~dg~i~vwd~~~~~~~~~~-~~~~~-----~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~---- 277 (430)
+++.++.+..+|..+|+.+... ..... ......+. ++.++.+..++.|..+|+++|+.+..........
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 8888899999999999998884 32211 11122222 5678888889999999999999988887522111
Q ss_pred -----e-EEEEEecCCCEEEEEeCCCe-EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 278 -----I-KTLCYNPCSRLVFAGTTAGY-ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 278 -----v-~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
+ ..+.+. ++ .++.++.++. +.+ |+.+++.+.+.. ...+..+ ..+++..|+.++.++.|..||+.+|
T Consensus 160 ~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~--~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 160 SSFSDINGSPVIS-DG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL--PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp EEETTEEEEEECC-TT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC--EECCCTEEEEEETTTEEEEEETTTT
T ss_pred eeecccccceEEE-CC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC--ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 1 222332 44 6777777775 555 999998775433 2333332 3356778888889999999999999
Q ss_pred ceEEE
Q 014104 351 EVLSR 355 (430)
Q Consensus 351 ~~~~~ 355 (430)
+.+.+
T Consensus 233 ~~~W~ 237 (238)
T PF13360_consen 233 KVVWQ 237 (238)
T ss_dssp EEEEE
T ss_pred CEEeE
Confidence 88754
|
... |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=124.13 Aligned_cols=197 Identities=13% Similarity=0.154 Sum_probs=138.0
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
|-..|.++.- |.. +.+||+.||.|++|....++.+..+...+...
T Consensus 2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~--------------------------------- 2253 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR--------------------------------- 2253 (2439)
T ss_pred ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcch---------------------------------
Confidence 3344444443 222 77788888888888777766665554322111
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEe---CCCeEEEEeCCCCc
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGS---SLGSIAISGLSSDQ 265 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~---~dg~i~vwd~~~~~ 265 (430)
+....++..|+.+.++..||.+.+|.+. .++....+.|.....++.|-. ..+++++ .++.+.+||..-..
T Consensus 2254 -----vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2254 -----VTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred -----hhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCc
Confidence 1122233344446677778888888874 566666777888888888754 4555553 57899999975433
Q ss_pred eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 266 RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
...-+...|.+.++++++-|..+.|++|+.+|.|++||++..+.++.++. +. ...++++|+..|.++||
T Consensus 2327 ~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw 2395 (2439)
T KOG1064|consen 2327 MNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIW 2395 (2439)
T ss_pred ccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEE
Confidence 22222245999999999999999999999999999999998887776654 22 45789999999999999
Q ss_pred EcCCCceEEEEEe
Q 014104 346 DQNTGEVLSRCVM 358 (430)
Q Consensus 346 d~~~~~~~~~~~~ 358 (430)
++.....+.++..
T Consensus 2396 ~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2396 RLSEFGLLHTFPS 2408 (2439)
T ss_pred EccccchhhcCch
Confidence 9998777777764
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-09 Score=101.68 Aligned_cols=220 Identities=16% Similarity=0.053 Sum_probs=135.0
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe-C--CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-G--TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV- 207 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 207 (430)
.+.++|.+.............+....|+|||+.|+ .+. + ..|.+||+.+++...............+++++..++
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~ 278 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLAL 278 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEE
Confidence 66777876654433334445566789999999988 443 2 358899998876422221122223467778888765
Q ss_pred EEecCCe--EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCC--eEEEEeCCCCceeEEEecCCCCCeEEE
Q 014104 208 VGCEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLG--SIAISGLSSDQRVATLRSTDCTGIKTL 281 (430)
Q Consensus 208 ~~~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~ 281 (430)
+.+.+|. |+++|+.+++.. .+..+........|+|+ +.++..+ .++ .|.++|+.+++...... ........
T Consensus 279 ~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~~~~~~ 355 (448)
T PRK04792 279 VLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGEQNLGG 355 (448)
T ss_pred EEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCCCCcCe
Confidence 4556664 888898877653 44445556678899976 5555444 333 57777887776543322 22233456
Q ss_pred EEecCCCEEEEEeC-CC--eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC-C--eEEEEEcCCCceEEE
Q 014104 282 CYNPCSRLVFAGTT-AG--YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID-G--VLRVLDQNTGEVLSR 355 (430)
Q Consensus 282 ~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d-g--~i~vwd~~~~~~~~~ 355 (430)
+|+|+|++|+..+. ++ .|.++|+.+++.. .+... ....... |+|+|+.|+..+.+ | .+++++. +|...+.
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps-~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~ 431 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPS-VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKAR 431 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCce-ECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 89999998886554 33 4666788877543 22222 1122345 89999988765533 3 3777786 4666666
Q ss_pred EEec
Q 014104 356 CVMD 359 (430)
Q Consensus 356 ~~~~ 359 (430)
+..+
T Consensus 432 l~~~ 435 (448)
T PRK04792 432 LPAG 435 (448)
T ss_pred CcCC
Confidence 6543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-09 Score=102.63 Aligned_cols=218 Identities=15% Similarity=0.041 Sum_probs=136.2
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC---CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV- 207 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 207 (430)
.|.++|.+.+................|+|||+.|+ .+.+ ..|.+||+++++...............+++++..++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 47788887655443334445566789999999988 4432 468999998876432222122223467777777765
Q ss_pred EEecCC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCC--eEEEEeCCCCceeEEEecCCCCCeEEE
Q 014104 208 VGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLG--SIAISGLSSDQRVATLRSTDCTGIKTL 281 (430)
Q Consensus 208 ~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~ 281 (430)
+...+| .|+++|+.+++.. .+..+........|+|+ +.++..+ .++ .|.++|+.+++...... ........
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~~~~~ 336 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNYNARP 336 (430)
T ss_pred EEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec--CCCCccce
Confidence 444454 6888899887654 44445556667889976 5555544 333 68888888777543322 12234457
Q ss_pred EEecCCCEEEEEeCC-C--eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceEEE
Q 014104 282 CYNPCSRLVFAGTTA-G--YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVLSR 355 (430)
Q Consensus 282 ~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~ 355 (430)
.|+|+|+.++....+ + .|.++|+.+++.. .+.. ........ |+|+|+.++..+.+ ..+.++++. |...+.
T Consensus 337 ~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~-~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~ 412 (430)
T PRK00178 337 RLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPS-VAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLP 412 (430)
T ss_pred EECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCce-ECCCCCEEEEEEecCCceEEEEEECC-CCceEE
Confidence 899999998866543 3 5888999877543 2221 11222445 99999988776643 356777775 444444
Q ss_pred EE
Q 014104 356 CV 357 (430)
Q Consensus 356 ~~ 357 (430)
+.
T Consensus 413 l~ 414 (430)
T PRK00178 413 LP 414 (430)
T ss_pred Cc
Confidence 44
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-10 Score=105.42 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=133.7
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEE-
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIW- 177 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vw- 177 (430)
+.+..+...+.+.+| |+| .|+..+.+ ..|.+||+.+++.......+.......|+|||+.|+ .+.++...+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 344566778888888 566 67666542 469999999887654333344456789999999887 3556665555
Q ss_pred -EcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CCeEEEE--ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 178 -RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVF--DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 178 -d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vw--d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
|+.++................+++++..++..+. +|...+| ++.+++.. .+..+........|+|+ +.++..+.
T Consensus 269 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 269 VNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEEEEEEc
Confidence 4554442211111222334567888887665553 4555555 44454432 22222333446789976 77776665
Q ss_pred CC---eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCceEEEEEe
Q 014104 253 LG---SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVVYSLQHL 326 (430)
Q Consensus 253 dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 326 (430)
++ .|.+||+.+++... +.. ........|+|+|+.|+..+.++ .+.+.++. ++....+..+.+.+...+ |
T Consensus 348 ~~g~~~I~v~d~~~g~~~~-lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~-w 422 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTA-LTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQRLSVQGGDVREPS-W 422 (427)
T ss_pred cCCcEEEEEEECCCCCeEE-ccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceEEeecCCCCCCCCc-c
Confidence 44 69999998877543 332 22346789999999888766543 36666663 555555655556666666 6
Q ss_pred eC
Q 014104 327 QN 328 (430)
Q Consensus 327 s~ 328 (430)
+|
T Consensus 423 sp 424 (427)
T PRK02889 423 GP 424 (427)
T ss_pred CC
Confidence 65
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=102.00 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=102.1
Q ss_pred EEEEecCCCEEEEEeCCeEEEEEcCCCcc--cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecC
Q 014104 156 LVDFDFDESKIVGLIGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMH 232 (430)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~ 232 (430)
..+|+|+|+++++..+-.+.+-|.++-+. ++.. -.. +..+.+..++-. +.....++.|.+|++...+-...+..-
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldk-i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDK-IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHH-hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 57899999999988888999999888763 2211 111 122445555554 667788999999999988887888877
Q ss_pred CCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 233 CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 233 ~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
...+.++.|+|+ .++.+...+-.|.+|.+.+.+....-. ....+..++|+|+|++.+..+.
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeec
Confidence 889999999987 466777789999999998866543322 3346789999999999887754
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-09 Score=93.71 Aligned_cols=217 Identities=15% Similarity=0.136 Sum_probs=143.4
Q ss_pred CCeEEEEEcCCCcccccCCCCc-eeeeeE-EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEE
Q 014104 171 GTRICIWRRNGLRSVFPSREGT-FMKGLC-MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLII 248 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 248 (430)
+|.|..||..+++.++....+. .....+ ....++.+++++.++.+..||..+|+.+..+.. .+.+.......++.++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeeecccccc
Confidence 5788889998888665543221 112222 333677788889999999999999999888775 2322211222445677
Q ss_pred EEeCCCeEEEEeCCCCceeEEE-ecCCC--CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCc------
Q 014104 249 SGSSLGSIAISGLSSDQRVATL-RSTDC--TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNV------ 319 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~-~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------ 319 (430)
.++.++.+..+|..+|+.+... ..... ...........+..++++..++.|..+|+++|+.+.........
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~ 160 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPIS 160 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EE
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCccee
Confidence 7778889999999999999884 32111 11222333334788899988999999999999998887664322
Q ss_pred ----eEEEEEeeCCCCeEEEEcCCCe-EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCC
Q 014104 320 ----VYSLQHLQNDTSTLVVGGIDGV-LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKT 394 (430)
Q Consensus 320 ----v~~l~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~ 394 (430)
+..-. ...++ .++.++.++. +.+ |+.+++.+. .....
T Consensus 161 ~~~~~~~~~-~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w--~~~~~--------------------------------- 202 (238)
T PF13360_consen 161 SFSDINGSP-VISDG-RVYVSSGDGRVVAV-DLATGEKLW--SKPIS--------------------------------- 202 (238)
T ss_dssp EETTEEEEE-ECCTT-EEEEECCTSSEEEE-ETTTTEEEE--EECSS---------------------------------
T ss_pred eecccccce-EEECC-EEEEEcCCCeEEEE-ECCCCCEEE--EecCC---------------------------------
Confidence 11222 22344 7777777775 555 999998664 22111
Q ss_pred CCCCeeE-EEEcCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 395 IRPPITC-LAVGMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 395 h~~~v~~-v~~~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
.+.. ...++..|+.++.|+.|..||+++|+..
T Consensus 203 ---~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 203 ---GIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp ----ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred ---CccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 2333 4456777777779999999999999753
|
... |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.4e-10 Score=95.02 Aligned_cols=281 Identities=13% Similarity=0.120 Sum_probs=165.8
Q ss_pred cccceeEEEec-CC-eEEEEeCCCeEEEEecCC-Ce----eEEeeecC-------------CceeEEEEecCCC---EEE
Q 014104 111 HSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEG-YK----CVEEYSLP-------------NAASLVDFDFDES---KIV 167 (430)
Q Consensus 111 h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~-~~----~~~~~~~~-------------~~~~~~~~~~~~~---~l~ 167 (430)
-.+-|.++.|. .| +|+||..+|.|.++.-+. .+ ....++.| +.+.-+.|.++++ +|+
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 45678899993 45 999999999999995332 11 22223222 2344466666554 344
Q ss_pred EEeCCeEEEEEcCCCcccccCC----CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe-ecCCCCeEEEEec
Q 014104 168 GLIGTRICIWRRNGLRSVFPSR----EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLS 242 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~~ 242 (430)
.+.|.+|++|.+.......... .+....+..+. ..+.+..|-.+. ..+.+.+ ..|+.-|.++.++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr----~p~~~~~~~~ve------a~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR----LPVEGRHDLEVE------ASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceee----ceeeccccceee------eeeeeeccccceeEeeeeeec
Confidence 8999999999987544222110 00000000000 001111110000 0122222 3578889999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCCceeEEE---ecC----CCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce----
Q 014104 243 ED-QLIISGSSLGSIAISGLSSDQRVATL---RST----DCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKS---- 309 (430)
Q Consensus 243 ~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~----~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---- 309 (430)
.+ +.+++ .+|=.|-+|+++-...-..+ +.+ ...-|++..|+|.. +.++-.+..|+|++.|++...+
T Consensus 174 sD~Et~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 174 SDKETFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred CccceEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 77 55554 56889999998743332222 210 11257888999965 5677778899999999984321
Q ss_pred --eee----------eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEc-CCCceEEEEEeccCcc--eeeeccCCceE
Q 014104 310 --LWE----------TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ-NTGEVLSRCVMDIGSA--SSSSNKVSGVI 374 (430)
Q Consensus 310 --~~~----------~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~-~~~~~~~~~~~~~~~~--~~~~~s~d~~v 374 (430)
+.+ +..--..|..+. |+++|+++++-.. -+|++||+ ...+++.+++.|.... .....-.|...
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvK-Fs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~If 330 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVK-FSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIF 330 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceE-EccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchh
Confidence 111 111124678888 9999999998754 58999999 4567888888776521 00111111110
Q ss_pred EEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCCC
Q 014104 375 ERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.-..++|+ +.++.|||....++++++..|.
T Consensus 331 -----------------------dKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 331 -----------------------DKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -----------------------heeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 11235564 4589999999999999977664
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.7e-09 Score=99.54 Aligned_cols=210 Identities=14% Similarity=0.051 Sum_probs=130.0
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeC--CeEEE
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIG--TRICI 176 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~--~~i~v 176 (430)
+.+..+...+....| ++| +|+.++.+ ..|.+||+.+++..............+|+||++.|+ . ..+ ..|.+
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 344556666777778 566 66666543 489999999886554433444455689999999887 3 333 35889
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
||+.++................+.+++..++..+. ++ .|.++|+.+++.. .+..+...+....|+|+ +.++.++.
T Consensus 263 ~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 263 MDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHR 341 (417)
T ss_pred EECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEc
Confidence 99987653222111122223456666776665554 33 6888898776543 44445566778899976 77777776
Q ss_pred CC---eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCce
Q 014104 253 LG---SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVV 320 (430)
Q Consensus 253 dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v 320 (430)
++ .|.+||+.++.. ..+.. ........|+|+|+.|+..+.++ .+++.+.. ++....+..+.+.+
T Consensus 342 ~~~~~~i~~~d~~~~~~-~~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~ 411 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGE-RVLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDV 411 (417)
T ss_pred cCCceEEEEEeCCCCCe-EEccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCc
Confidence 65 899999987654 33332 12344568999999888776654 35555543 44444444333333
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.7e-11 Score=105.56 Aligned_cols=215 Identities=14% Similarity=0.159 Sum_probs=146.8
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC-C------eeEEeeecC-CceeEEEEecCCCEEEEEeCC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-Y------KCVEEYSLP-NAASLVDFDFDESKIVGLIGT 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 172 (430)
..+..+.||+..|..++- ++. -+++++.|.+|++|.+.. + .+..++..| ..+..+.|-.+
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~---------- 795 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD---------- 795 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec----------
Confidence 467788999999999866 444 899999999999998763 1 122233322 11111222111
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC---CEE
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED---QLI 247 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~---~~l 247 (430)
.-..++.||.|.+||.--++.+..+. ...+.+..+..-++ ..+
T Consensus 796 --------------------------------lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~il 843 (1034)
T KOG4190|consen 796 --------------------------------LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHIL 843 (1034)
T ss_pred --------------------------------cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchhe
Confidence 12345667889999876666554332 11223333333332 344
Q ss_pred EE-EeCCCeEEEEeCCCCceeEEEecC----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEE
Q 014104 248 IS-GSSLGSIAISGLSSDQRVATLRST----DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 248 ~~-~~~dg~i~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
+. ++...+|+++|.+.+.....++.. ....+.++++.|.|+.++++-.+|.|.+.|.++|+.+..++.-......
T Consensus 844 iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllq 923 (1034)
T KOG4190|consen 844 IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQ 923 (1034)
T ss_pred eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhh
Confidence 44 478899999999988876665532 2346899999999999999999999999999999999888766555555
Q ss_pred EEEeeCCCCeEEEEcCCCeEEE-EEcCCCceEEEEEeccC
Q 014104 323 LQHLQNDTSTLVVGGIDGVLRV-LDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 323 l~~~s~~~~~l~s~~~dg~i~v-wd~~~~~~~~~~~~~~~ 361 (430)
++ .|..+.|+....|.++.+ |..-+|....+.+..+.
T Consensus 924 la--apsdq~L~~saldHslaVnWhaldgimh~q~kpppe 961 (1034)
T KOG4190|consen 924 LA--APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE 961 (1034)
T ss_pred hc--CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc
Confidence 55 366778888888999998 98877776665554333
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=106.66 Aligned_cols=277 Identities=12% Similarity=0.079 Sum_probs=171.7
Q ss_pred eeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc---cccCCCCceeeeeEEEEcC--CceEEEecCCeEEEEECC
Q 014104 147 EYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS---VFPSREGTFMKGLCMRYFD--PEAVVGCEDGTARVFDMY 221 (430)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~i~vwd~~ 221 (430)
.++.......+.++|.|+-++.+..-.+.+.|+...-. .+.......+....|++.. +.-++......-.+|++.
T Consensus 20 sl~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA 99 (1081)
T KOG0309|consen 20 SLKVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLA 99 (1081)
T ss_pred EEEecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhh
Confidence 34445667778899999988855555566777765431 1111122222223333332 223333444456688875
Q ss_pred C---CeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce-eEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 222 S---RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR-VATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 222 ~---~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
. ......+.+|...|+.+.|++. ..+++++.|-.+..||+++... +..+.. -......|+|+.....+.+.+.
T Consensus 100 ~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~-w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 100 KSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS-WRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred cCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec-ccccCceeeecccCcchhhhcc
Confidence 3 2344567799999999999964 7999999999999999997643 444443 4446778899865555555566
Q ss_pred CCeEEEEeCCCC-ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce--EEEEEeccCcc---------
Q 014104 296 AGYASCWDLRTM-KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV--LSRCVMDIGSA--------- 363 (430)
Q Consensus 296 dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~--------- 363 (430)
...|.+||.+.| .++..+++|...|+++.+-..-...+.+++.||+|++||...... -++... ...+
T Consensus 179 g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFG 257 (1081)
T ss_pred CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc-cCcceeccccccC
Confidence 777999999875 567788999899999883333445788999999999999874322 111111 1111
Q ss_pred --eeeeccCCc-eEEEeecc------cccCCcccccCCCCCCCCeeEEEE------c------CeEEEEeeCCCeEEEEE
Q 014104 364 --SSSSNKVSG-VIERNEGR------RLSAGCCIDRIPKTIRPPITCLAV------G------MKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 364 --~~~~~s~d~-~v~~~~~~------~~~~~~~~~~~~~~h~~~v~~v~~------~------~~~l~t~~~Dg~v~vw~ 422 (430)
+.+-...-+ .+....-. ...........+.+|.+.|..+-| + .-.|+|-+.|..+|+|.
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 111111111 22111111 111122233344778888876665 1 23499999999999998
Q ss_pred ecC
Q 014104 423 FNY 425 (430)
Q Consensus 423 ~~~ 425 (430)
+.+
T Consensus 338 I~~ 340 (1081)
T KOG0309|consen 338 IDS 340 (1081)
T ss_pred ccH
Confidence 864
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-08 Score=93.74 Aligned_cols=220 Identities=12% Similarity=-0.019 Sum_probs=131.7
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCE--EE--EEeC--CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK--IV--GLIG--TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE 205 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~--~~~~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (430)
..|.+.|.+.+..............-.|+|||+. ++ +..+ ..|.+.++.+++...............+++++..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 3567777776554433333344455799999975 32 2223 4688889988764322222222234678888888
Q ss_pred eEEEec-----CCeEEEEECCCC---eeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEE--eCCC-CceeEEEec
Q 014104 206 AVVGCE-----DGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAIS--GLSS-DQRVATLRS 272 (430)
Q Consensus 206 l~~~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vw--d~~~-~~~~~~~~~ 272 (430)
|+..+. +..+..|++.++ +.......+.+.....+|+|+ +.|+..+ .+|...+| ++.. +.....+..
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 665442 223444776653 333333333344567899987 5566554 46654454 4432 233344443
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC---CCeEEEEE
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI---DGVLRVLD 346 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~---dg~i~vwd 346 (430)
....+....|+|||+.|+..+.+ ..|.+||+.+++... +......+.... |+|||+.|+..+. ...|+++|
T Consensus 325 -~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~-wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 325 -KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPS-WAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred -CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceE-ECCCCCEEEEEECCCCCceEEEEE
Confidence 33467788999999988865443 469999998876543 332334556677 9999998875432 35788999
Q ss_pred cCCCceEE
Q 014104 347 QNTGEVLS 354 (430)
Q Consensus 347 ~~~~~~~~ 354 (430)
+.+++...
T Consensus 402 l~~g~~~~ 409 (428)
T PRK01029 402 LITKKTRK 409 (428)
T ss_pred CCCCCEEE
Confidence 98776543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-09 Score=91.99 Aligned_cols=240 Identities=14% Similarity=0.126 Sum_probs=157.0
Q ss_pred EeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCC-CcccccCCCCceeeeeEEEEc--CCceEEEecCCeEEEEEC
Q 014104 146 EEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNG-LRSVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDM 220 (430)
Q Consensus 146 ~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~ 220 (430)
..++++ +.+.....-|....++ .+.|.++++|--.. ++.-..........+.++.+. ...|++|-.+|++.-+.+
T Consensus 18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence 444444 2233333344444455 88899999996543 332111111111223334433 334899999999988865
Q ss_pred C----CCeeeEEeecCCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 221 Y----SRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 221 ~----~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
. .....+....|...+..+-|+ +..++++.+.|..+.---.+.+..+..+. ....-+++.+.-. +.+.|..
T Consensus 98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~~--~~fvGd~ 173 (404)
T KOG1409|consen 98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDAL--YAFVGDH 173 (404)
T ss_pred hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceeeE--EEEeccc
Confidence 3 334556677899999999998 55899999999887666666666544333 1112222333222 5667777
Q ss_pred CCeEEEEeCC--CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-EEEEEeccCcceeeeccCCc
Q 014104 296 AGYASCWDLR--TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 296 dg~i~i~d~~--~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~d~ 372 (430)
.|.|.+..+. .-.++.++.+|.+.+.++. |.+....|++|..|..+.+||+.-.+- ...+.
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~-Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~--------------- 237 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLK-WDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQ--------------- 237 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEE-EcCCCcEEEeccccCceEEEeccCCcceeeeec---------------
Confidence 7777766543 4567888999999999999 999999999999999999999974332 22232
Q ss_pred eEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+|...|..+.. .-+.+++++.||.|-+|+.+..
T Consensus 238 ---------------------gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 238 ---------------------GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred ---------------------cchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 34445666555 3567999999999999998643
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.3e-10 Score=90.55 Aligned_cols=284 Identities=16% Similarity=0.229 Sum_probs=157.4
Q ss_pred hcccCCEeEEEEecccc-ceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeE
Q 014104 97 ALEEGRIDIDQWKAHSV-GVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRI 174 (430)
Q Consensus 97 ~~~~~~~~~~~l~~h~~-~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 174 (430)
.|..+...+.++.+|.+ .|+.+.+..+ .|+++..++.+.......+.+....+....+.-
T Consensus 20 ~~~~~t~~vD~i~~~~d~~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~------------------ 81 (319)
T KOG4714|consen 20 EVGSSTPLVDEIMQHADVKLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDP------------------ 81 (319)
T ss_pred eeeccCcchhhcccccceEEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCc------------------
Confidence 34445556666777766 2445555555 788888888777766555444432221111100
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee-eEEee-cCCCCeEEEEecCCCEEEEEe-
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIR-MHCAPVTSLSLSEDQLIISGS- 251 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~-~~~~~i~~~~~~~~~~l~~~~- 251 (430)
+| .+..+ ............+..+++++.||.+.+++.+.-.. .+.+. .|.+.....-.+..+++.++.
T Consensus 82 -~~-------~~a~~-sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~ 152 (319)
T KOG4714|consen 82 -FK-------VLAKN-SEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGC 152 (319)
T ss_pred -ee-------eeecc-CCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCc
Confidence 00 01101 11111222333455589999999999998654111 11111 111111111111233343332
Q ss_pred ----CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCCCc-eeeeeecCCCceEEEEE
Q 014104 252 ----SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRTMK-SLWETRISPNVVYSLQH 325 (430)
Q Consensus 252 ----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~ 325 (430)
.-+..+.|+++..+.+..-.. ....|.+++-+|..+ .+++|+.||.+.+||.++.. +...+..|..+++.+.
T Consensus 153 g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~- 230 (319)
T KOG4714|consen 153 GNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVH- 230 (319)
T ss_pred ceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhee-
Confidence 223455666553332221111 223599999999765 56688999999999999864 3445788999999998
Q ss_pred eeC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEe-ecccccCCcccccCCCCCCCCeeEEE
Q 014104 326 LQN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERN-EGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 326 ~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
|+| ++..|++++.||.+-.||..+ +.+. +..... .+..| .+.....-..+..+...-...|+++.
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas~-~~l~-i~~~~s-----------~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD 297 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAST-TFLS-ISNQAS-----------VISSWLSGDPVKSRIEITSLLPSRSLSINSFD 297 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCCC-ceEE-ecCccc-----------cccccccCCcccceEeeeccccccceeeeeee
Confidence 666 567999999999999999774 3333 111111 00011 01111111222333333445788888
Q ss_pred EcCeEEEEeeCCCeEEEEE
Q 014104 404 VGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 404 ~~~~~l~t~~~Dg~v~vw~ 422 (430)
..|..|++|++-+.|.+++
T Consensus 298 V~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 298 VLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ccCceEEeccccceEEEec
Confidence 8899999999999998875
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.6e-07 Score=81.58 Aligned_cols=239 Identities=11% Similarity=0.103 Sum_probs=149.2
Q ss_pred eEEEe-cCC-eEEEEeC----CCeEEEEecCCC--e--eEEeee-cCCceeEEEEecCCCEEEEE--eCCeEEEEEcCCC
Q 014104 116 DQCRM-KRG-LILTGVG----DKVMRLWSLEGY--K--CVEEYS-LPNAASLVDFDFDESKIVGL--IGTRICIWRRNGL 182 (430)
Q Consensus 116 ~~~~~-~~~-~l~s~~~----dg~i~iwd~~~~--~--~~~~~~-~~~~~~~~~~~~~~~~l~~~--~~~~i~vwd~~~~ 182 (430)
..+++ +++ +|+++.. ++.|..|++... + .+.... .......+++++++++|+.+ .+|.+.+++++..
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 44555 444 7777765 579999987753 3 344444 34455669999999999843 4899999999863
Q ss_pred -cc-----ccc---------CCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCe--e--eEEee-cCCCCeEEEEe
Q 014104 183 -RS-----VFP---------SREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRK--C--SQIIR-MHCAPVTSLSL 241 (430)
Q Consensus 183 -~~-----~~~---------~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~--~--~~~~~-~~~~~i~~~~~ 241 (430)
.. ... .........+.+.+++..+++.. ....|.+|++.... . ...+. ........+.|
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 21 110 01122233455666666655543 34589999987654 2 12222 23346789999
Q ss_pred cCC-CEE-EEEeCCCeEEEEeCC--CCce--eEEEec---CC--CCCeEEEEEecCCCEEEEEe-CCCeEEEEeCC--CC
Q 014104 242 SED-QLI-ISGSSLGSIAISGLS--SDQR--VATLRS---TD--CTGIKTLCYNPCSRLVFAGT-TAGYASCWDLR--TM 307 (430)
Q Consensus 242 ~~~-~~l-~~~~~dg~i~vwd~~--~~~~--~~~~~~---~~--~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~--~~ 307 (430)
+|+ +++ ++.-.+++|.++++. ++.. +..+.. .. ......++++|+|++|+++. ..+.|.+|++. ++
T Consensus 200 ~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 200 SPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG 279 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT
T ss_pred cCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC
Confidence 987 554 445567889999988 4432 222221 11 12578899999999988765 46689999993 23
Q ss_pred c--eeeeeecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEc--CCCceEEE
Q 014104 308 K--SLWETRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQ--NTGEVLSR 355 (430)
Q Consensus 308 ~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~--~~~~~~~~ 355 (430)
+ .+..+.........++ ++|+|++|+++. .++.|.+|++ ++|.+...
T Consensus 280 ~l~~~~~~~~~G~~Pr~~~-~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 280 TLTLVQTVPTGGKFPRHFA-FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TEEEEEEEEESSSSEEEEE-E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEEeCCCCCccEEE-EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 3 3334444344578888 999999998776 6678999976 46665443
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-08 Score=95.45 Aligned_cols=217 Identities=9% Similarity=-0.020 Sum_probs=130.9
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCC--eEEE
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGT--RICI 176 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~--~i~v 176 (430)
+.+..+...+....| ++| .|+..+.+ ..|.+||+.+++........+......|+|||+.|+ . ..++ .|.+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 345566677788888 566 66655543 368999999886554333333444589999999887 3 3344 5888
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
+|++++................+++++..++..+. +| .|+++|+.+++..... ..........|+|+ +.++..+.
T Consensus 272 ~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 272 MDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTLVMVHR 350 (430)
T ss_pred EECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEEc
Confidence 89988764322222222333566777777655543 33 5778888777643322 12223345678876 66665553
Q ss_pred -CC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEeCCCCceeeeeecCCCceEEEEEe
Q 014104 253 -LG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---GYASCWDLRTMKSLWETRISPNVVYSLQHL 326 (430)
Q Consensus 253 -dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 326 (430)
++ .|.++|+.+++.. .+.. ........|+|+|+.++..+.+ ..+.++++. +.....+..+.+.+...+ |
T Consensus 351 ~~~~~~l~~~dl~tg~~~-~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~-w 425 (430)
T PRK00178 351 QDGNFHVAAQDLQRGSVR-ILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPS-W 425 (430)
T ss_pred cCCceEEEEEECCCCCEE-EccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCc-c
Confidence 33 5889999887653 3332 1222355899999988866543 347777775 333344444445555555 5
Q ss_pred eC
Q 014104 327 QN 328 (430)
Q Consensus 327 s~ 328 (430)
+|
T Consensus 426 s~ 427 (430)
T PRK00178 426 SP 427 (430)
T ss_pred CC
Confidence 54
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-09 Score=87.06 Aligned_cols=223 Identities=17% Similarity=0.141 Sum_probs=145.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC------C-ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc-c---cccCCCC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP------N-AASLVDFDFDESKIV-GLIGTRICIWRRNGLR-S---VFPSREG 191 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~-~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~-~---~~~~~~~ 191 (430)
.++-+..+|.|.++.....+....+.+- . ....+.|++.+..++ +-.+|.+.+-+..... . .++.|+-
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 5667777899999876654444333321 1 133466777777777 6667888855544332 1 2233332
Q ss_pred ceeeeeEEEEcCCc-eEEEecCCeEEEEECC-CCeeeEE-eecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCC-Cc
Q 014104 192 TFMKGLCMRYFDPE-AVVGCEDGTARVFDMY-SRKCSQI-IRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSS-DQ 265 (430)
Q Consensus 192 ~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~-~~~~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~-~~ 265 (430)
+ .....+....|. +.+|+.|+.+..||++ .++.+.. .+.|...|.++.-+|. .++++|+.|..|++||.++ ++
T Consensus 167 E-~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 167 E-AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred e-eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 2 222334444454 8899999999999998 4455544 5678899999999853 6999999999999999984 56
Q ss_pred eeEEEecCCCCCeEEEEEecCC--CEEEEEeCCCeEEEEeCCCCc-----eeeeeecCCCceEEEEEeeCCCCeEEEEc-
Q 014104 266 RVATLRSTDCTGIKTLCYNPCS--RLVFAGTTAGYASCWDLRTMK-----SLWETRISPNVVYSLQHLQNDTSTLVVGG- 337 (430)
Q Consensus 266 ~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~v~~l~~~s~~~~~l~s~~- 337 (430)
++..-. ..+.|..+..+|.- ..|+++-.+| .+|.+...+. .....+.|.+-++.-. |......|+|++
T Consensus 246 Pl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D-Wd~~~~~lATCsF 321 (339)
T KOG0280|consen 246 PLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGD-WDSKDSFLATCSF 321 (339)
T ss_pred ccccCc--cccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccc-cccccceeeeeec
Confidence 665444 56789999999853 4566666666 7777776532 2334556666666665 433345688866
Q ss_pred CCCeEE-EEEcCCCc
Q 014104 338 IDGVLR-VLDQNTGE 351 (430)
Q Consensus 338 ~dg~i~-vwd~~~~~ 351 (430)
.|+.++ +|-.-+++
T Consensus 322 YDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 322 YDKKIRQLWLHITGE 336 (339)
T ss_pred cccceeeeeeeccCC
Confidence 566655 77655544
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-08 Score=95.35 Aligned_cols=212 Identities=14% Similarity=0.025 Sum_probs=125.4
Q ss_pred cccceeEEEe-cCC-eEEEEeC-CC--eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCe--EEEEEcCC
Q 014104 111 HSVGVDQCRM-KRG-LILTGVG-DK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTR--ICIWRRNG 181 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~--i~vwd~~~ 181 (430)
+...+.+..| ||| .|+..+. ++ .|.+||+.+++...............|+|||+.|+ ...++. |.++|+++
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 3445667777 566 6665543 33 58888998876543322333344679999999887 344554 78888887
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-CC--
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LG-- 254 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg-- 254 (430)
++...............|++++..++..+. ++ .|.++|+.+++... +..........+|+|+ +.++..+. ++
T Consensus 296 g~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~ 374 (448)
T PRK04792 296 KALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNRTNGKF 374 (448)
T ss_pred CCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEecCCce
Confidence 763322222222334567777777655443 33 57777887776433 2222223345688876 66655543 34
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AG--YASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
.|.++|+.+++.. .+.. . .......|+|+|+.|+.... ++ .+++++. ++.....+..+.+.+...+ |+|
T Consensus 375 ~I~~~dl~~g~~~-~lt~-~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~-Wsp 446 (448)
T PRK04792 375 NIARQDLETGAMQ-VLTS-T-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPA-WSP 446 (448)
T ss_pred EEEEEECCCCCeE-EccC-C-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCc-cCC
Confidence 5666888877653 3332 1 12224479999998876544 33 3777776 4656666665555566665 665
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.8e-07 Score=76.56 Aligned_cols=216 Identities=11% Similarity=0.127 Sum_probs=139.6
Q ss_pred CCeEEEEecCC--C--eeEEeeecCCceeEEEEecCCCEEE-EEe---CCeEEEEEcCC--CcccccC---CCCceeeee
Q 014104 131 DKVMRLWSLEG--Y--KCVEEYSLPNAASLVDFDFDESKIV-GLI---GTRICIWRRNG--LRSVFPS---REGTFMKGL 197 (430)
Q Consensus 131 dg~i~iwd~~~--~--~~~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~~i~vwd~~~--~~~~~~~---~~~~~~~~~ 197 (430)
+.-|.+|++.+ + ..+........+..++++++++.|. +.. +|.|.-|.++. ++..+.. ..+.....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 56799999873 2 2334444567788899999999887 332 57788777765 4433221 122222345
Q ss_pred EEEEcCCceEEEec-CCeEEEEECCC-Cee---eEEeecCCCC----------eEEEEecCC-CEEEEEeC-CCeEEEEe
Q 014104 198 CMRYFDPEAVVGCE-DGTARVFDMYS-RKC---SQIIRMHCAP----------VTSLSLSED-QLIISGSS-LGSIAISG 260 (430)
Q Consensus 198 ~~~~~~~~l~~~~~-dg~i~vwd~~~-~~~---~~~~~~~~~~----------i~~~~~~~~-~~l~~~~~-dg~i~vwd 260 (430)
++...+..++++.. .|.|.++-++. |.. +..+ .|.+. +....+.|+ +++++..- -..|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 66666666766655 48899998865 432 2222 35544 778888887 56666542 34799999
Q ss_pred CCCCceeEEE--ecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCCC-ceeeeeecC---------CCceEEEEEee
Q 014104 261 LSSDQRVATL--RSTDCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRTM-KSLWETRIS---------PNVVYSLQHLQ 327 (430)
Q Consensus 261 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~-~~~~~~~~~---------~~~v~~l~~~s 327 (430)
+..|.....- .-......+.|.|+|++++..+.++ +++|.+|..... ..+.+++.+ ......+. ++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh-is 252 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH-IS 252 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE-EC
Confidence 9877653221 1124557899999999998886654 889999988763 223333221 23455666 89
Q ss_pred CCCCeEEEEc-CCCeEEEEEcC
Q 014104 328 NDTSTLVVGG-IDGVLRVLDQN 348 (430)
Q Consensus 328 ~~~~~l~s~~-~dg~i~vwd~~ 348 (430)
+||++|.++. ....|-+|.+.
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEc
Confidence 9999998886 23467777665
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-08 Score=90.47 Aligned_cols=232 Identities=10% Similarity=0.138 Sum_probs=146.9
Q ss_pred eEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCC--CEEE------EEeCCeEEEEEcCCCc--c
Q 014104 116 DQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE--SKIV------GLIGTRICIWRRNGLR--S 184 (430)
Q Consensus 116 ~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~------~~~~~~i~vwd~~~~~--~ 184 (430)
++..|+ |+.++.=-..+.+.+|++.+-+.+..--+...+....++|-+ ..++ .+.-..+++|...-.. .
T Consensus 129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~ 208 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQ 208 (566)
T ss_pred cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccc
Confidence 466674 334444444568999998874433322233556667777763 3333 2334679999876221 1
Q ss_pred cccCCCCceeee--eEEEEcCCc-e--EEEec---------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-E-E
Q 014104 185 VFPSREGTFMKG--LCMRYFDPE-A--VVGCE---------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-L-I 247 (430)
Q Consensus 185 ~~~~~~~~~~~~--~~~~~~~~~-l--~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~-l 247 (430)
......-....- +.|...+.. | ++..- ..++++.+++...+.-.+. ..++|.++.|+++ . + +
T Consensus 209 ~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~V 287 (566)
T KOG2315|consen 209 PVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAV 287 (566)
T ss_pred hhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEE
Confidence 110000000111 222222222 2 22222 3468888887444444443 4789999999976 3 3 3
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeeeeecCCCceEEEE
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 324 (430)
+.|-.-..+.+||++ +..+..+. .++=.++-|+|.|++++.++- .|.|-+||+.+.+++..+......+ ..
T Consensus 288 vyGfMPAkvtifnlr-~~~v~df~---egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt~--~e 361 (566)
T KOG2315|consen 288 VYGFMPAKVTIFNLR-GKPVFDFP---EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTTV--FE 361 (566)
T ss_pred EEecccceEEEEcCC-CCEeEeCC---CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCceE--EE
Confidence 445677899999986 77887774 456788999999999887664 4789999999999998887654433 33
Q ss_pred EeeCCCCeEEEEcC------CCeEEEEEcCCCceEEEE
Q 014104 325 HLQNDTSTLVVGGI------DGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 325 ~~s~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~ 356 (430)
|+|||++++|+.. |+.++||+.. |..+..-
T Consensus 362 -W~PdGe~flTATTaPRlrvdNg~Kiwhyt-G~~l~~~ 397 (566)
T KOG2315|consen 362 -WSPDGEYFLTATTAPRLRVDNGIKIWHYT-GSLLHEK 397 (566)
T ss_pred -EcCCCcEEEEEeccccEEecCCeEEEEec-Cceeehh
Confidence 9999999998874 6889999986 6655433
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-08 Score=82.20 Aligned_cols=196 Identities=9% Similarity=-0.036 Sum_probs=127.2
Q ss_pred EEE-EEeCCeEEEEEcCCCcccccCCCCce---eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE
Q 014104 165 KIV-GLIGTRICIWRRNGLRSVFPSREGTF---MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 165 ~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 240 (430)
+|+ ++..|++.+|...+.+........+. .-.-..+.....+..++.|.++++.+++-+..-.......-.+.+++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLH 165 (344)
T ss_pred EEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeeeE
Confidence 444 55666777776665543222221111 11111122222377888899999988865433222221222378899
Q ss_pred ecCC-CEEEEEeCCCeEEEEeCCCC-ce-eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee-----e
Q 014104 241 LSED-QLIISGSSLGSIAISGLSSD-QR-VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW-----E 312 (430)
Q Consensus 241 ~~~~-~~l~~~~~dg~i~vwd~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-----~ 312 (430)
++++ .++++.++...|..|.+... +. +..........-.+..|+.....+|++..||++.|||++...... +
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sst 245 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISST 245 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhccc
Confidence 9976 78888898899999988642 22 332333344566788999888999999999999999999754322 2
Q ss_pred eecCCCceEEEEEeeCCCC--eEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 313 TRISPNVVYSLQHLQNDTS--TLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
-..|.+++.... |++.|. +|+-.-.-+.+.+-|+++++..+.+...++
T Consensus 246 rp~hnGa~R~c~-Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d 295 (344)
T KOG4532|consen 246 RPHHNGAFRVCR-FSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDD 295 (344)
T ss_pred CCCCCCceEEEE-ecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcc
Confidence 235778999988 998664 555555668899999999988777665433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-08 Score=93.00 Aligned_cols=251 Identities=12% Similarity=0.086 Sum_probs=170.3
Q ss_pred ccceeEEEec--CCeEEEEeCCCeEEEEecCCCee---------------EEeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 112 SVGVDQCRMK--RGLILTGVGDKVMRLWSLEGYKC---------------VEEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 112 ~~~v~~~~~~--~~~l~s~~~dg~i~iwd~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
.....|+.|+ .|+++.|+.||.++|-.+.+... -+++.+| ..+..+.|+.+.+.|. +..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3456789995 45999999999999997765221 1345555 4567788998888888 67789
Q ss_pred eEEEEEcCCCc---ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeE--EeecCCCCeEEEEecCC-CE
Q 014104 173 RICIWRRNGLR---SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QL 246 (430)
Q Consensus 173 ~i~vwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~ 246 (430)
-|.+|-+-.+. .........++..++|..++..++....||.|.+=.+.. ..+. .+++ .-...+.|+++ ..
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG-NRIwgKeLkg--~~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG-NRIWGKELKG--QLLAHVLWSEDLEQ 170 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc-ceecchhcch--heccceeecccHHH
Confidence 99999987765 345556667777788888888899999999998877643 3332 2222 23447889987 66
Q ss_pred EEEEeCCCeEEEEeCCCCc-------eeEEEecC---CCCCeEEEEEe--------cCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 247 IISGSSLGSIAISGLSSDQ-------RVATLRST---DCTGIKTLCYN--------PCSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~-------~~~~~~~~---~~~~v~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
++.+-.+|.+.++|....- +.....+. ....+-.+.|. |+...|+++..+|.+.+-.-.+..
T Consensus 171 ~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred HHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 7777788999999965321 11111111 11235555553 577899999999998887655433
Q ss_pred eeeeeecCCCceEEEEEeeCCCCeEEEEcCC---------CeEEEEEcCCCceEEEEEeccCcceeeec
Q 014104 309 SLWETRISPNVVYSLQHLQNDTSTLVVGGID---------GVLRVLDQNTGEVLSRCVMDIGSASSSSN 368 (430)
Q Consensus 309 ~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 368 (430)
....+... -.+.... |+++|..|+.++.+ +.|.+|..- |+.+.+++.....+..+++
T Consensus 251 ~Pvv~dtg-m~~vgak-Wnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg~~It~lsW 316 (1189)
T KOG2041|consen 251 EPVVVDTG-MKIVGAK-WNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPGSCITGLSW 316 (1189)
T ss_pred CCeEEecc-cEeecce-ecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCCceeeeeEE
Confidence 32233322 5677888 99999999998854 356666643 7777777776655544443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.2e-07 Score=95.89 Aligned_cols=246 Identities=15% Similarity=0.103 Sum_probs=149.7
Q ss_pred EEEEecCCC-EEE-EEeCCeEEEEEcCCCcccccCCCC------------c--eeeeeEEEEcCCceEEE-ecCCeEEEE
Q 014104 156 LVDFDFDES-KIV-GLIGTRICIWRRNGLRSVFPSREG------------T--FMKGLCMRYFDPEAVVG-CEDGTARVF 218 (430)
Q Consensus 156 ~~~~~~~~~-~l~-~~~~~~i~vwd~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~l~~~-~~dg~i~vw 218 (430)
-+++++++. .++ -+..+.|.++|..+.........+ . ....+++...+..++++ ..++.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 367777544 444 455678999998765432211100 0 11234444445555544 445789999
Q ss_pred ECCCCeeeEEeecC-----------------CCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecC------
Q 014104 219 DMYSRKCSQIIRMH-----------------CAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRST------ 273 (430)
Q Consensus 219 d~~~~~~~~~~~~~-----------------~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------ 273 (430)
|..++. +.++.+. -.....++++| + .++++.+.++.|++||..++... .+.+.
T Consensus 652 d~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~ 729 (1057)
T PLN02919 652 DFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL 729 (1057)
T ss_pred ecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence 987654 3333210 11235789987 4 56677778899999998876542 22110
Q ss_pred --------CCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceeeeee-------------cC--------CCceEEE
Q 014104 274 --------DCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRTMKSLWETR-------------IS--------PNVVYSL 323 (430)
Q Consensus 274 --------~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~-------------~~--------~~~v~~l 323 (430)
.-.....++++|+++.|+ +-..++.|++||+.++....... .+ .....++
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 012456799999998554 55667899999998764321100 00 1123577
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
+ ++++|..+++-+.++.|++||..++.... +.+... .+..||... .+.-.....++
T Consensus 810 a-vd~dG~LYVADs~N~rIrviD~~tg~v~t-iaG~G~-----~G~~dG~~~-----------------~a~l~~P~GIa 865 (1057)
T PLN02919 810 L-CAKDGQIYVADSYNHKIKKLDPATKRVTT-LAGTGK-----AGFKDGKAL-----------------KAQLSEPAGLA 865 (1057)
T ss_pred e-EeCCCcEEEEECCCCEEEEEECCCCeEEE-EeccCC-----cCCCCCccc-----------------ccccCCceEEE
Confidence 7 88999988888899999999998765543 332111 122233210 11112445666
Q ss_pred E--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 404 V--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 404 ~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+ +|+.+++-+.+++|++||+.+++
T Consensus 866 vd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 866 LGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EeCCCCEEEEECCCCEEEEEECCCCc
Confidence 6 58888998999999999998875
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-10 Score=115.49 Aligned_cols=172 Identities=14% Similarity=0.136 Sum_probs=128.5
Q ss_pred EEcCCceEEEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 200 RYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 200 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
.+..+..++|+.||.|++|.-..++.+..++. -+..|+.+.|+ .++.+..+..||.+.+|.+. .+.....+. |...
T Consensus 2217 Hp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qc-hnk~ 2294 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQC-HNKA 2294 (2439)
T ss_pred CCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceecccc-CCcc
Confidence 34556699999999999999888877766652 23788889998 56888888999999999987 455555554 7777
Q ss_pred eEEEEEecCCCEEEEEe---CCCeEEEEeCCC--C-ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 278 IKTLCYNPCSRLVFAGT---TAGYASCWDLRT--M-KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~--~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
...+.|-. ..+++++ .++.+.+||..- + ..+. ..|.+.+++++ +-|..+.|++|+.+|.|++||++..+
T Consensus 2295 ~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~-~~P~~qllisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2295 LSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLA-YAPKHQLLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred ccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEE-EcCcceEEEecCCcCcEEEeehHHHH
Confidence 88888854 5666654 467899999753 2 2333 78999999999 89999999999999999999999887
Q ss_pred eEEEEEeccCcceeeeccCCceEEEee
Q 014104 352 VLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 352 ~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
.+.+++.-....+.+.++..|.+.+|.
T Consensus 2370 l~h~~~~~~~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2370 LRHTFQALDTREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred HHHHhhhhhhhheeeccCcccceEEEE
Confidence 777776533333445555555554443
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-07 Score=93.00 Aligned_cols=307 Identities=11% Similarity=0.053 Sum_probs=184.9
Q ss_pred ccceeEEEe-cCC-eEEEEeCCCeEEEE----ecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcC----
Q 014104 112 SVGVDQCRM-KRG-LILTGVGDKVMRLW----SLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN---- 180 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~---- 180 (430)
.+.|.++.+ ++. .++.+..+|.|.+. +..+.+....-....++.+++||||+..|+ ++.++++.+.+.+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI 154 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence 456778877 554 78888889999999 655544333333457899999999999999 8888887765421
Q ss_pred C---------------------CcccccCCC-----------------------CceeeeeEEEEcCCceEEEec-----
Q 014104 181 G---------------------LRSVFPSRE-----------------------GTFMKGLCMRYFDPEAVVGCE----- 211 (430)
Q Consensus 181 ~---------------------~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~~~~----- 211 (430)
. .+..|.+.. ......++|..++.++++.+.
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 0 001111110 011233566667777776654
Q ss_pred -CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC---CCeEEEEeCCCCceeEEEecC---CCCCeEEEEE
Q 014104 212 -DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRST---DCTGIKTLCY 283 (430)
Q Consensus 212 -dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~ 283 (430)
-..++||+-+ |+...+-+.-.+--.+++|-|. +++++.-. ...|.+|. ++|-....|.-. ....|..+.|
T Consensus 235 ~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 235 SRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred ceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEE
Confidence 2579999964 7655544433444467899986 66666543 34677776 566665555532 3458999999
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCcee--eeeecC-CCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 284 NPCSRLVFAGTTAGYASCWDLRTMKSL--WETRIS-PNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 284 ~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~-~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
++++..||....|. |.+|-..+..-. +++... ...+..+. |+|... .|...+.+|.+..++..-.. ..-...
T Consensus 313 n~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~-Wdpe~p~~L~v~t~~g~~~~~~~~~~v--~~s~~~ 388 (928)
T PF04762_consen 313 NSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK-WDPEKPLRLHVLTSNGQYEIYDFAWDV--SRSPGS 388 (928)
T ss_pred CCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE-ECCCCCCEEEEEecCCcEEEEEEEEEE--EecCCC
Confidence 99999999987766 999999886422 223322 13344476 887544 56667666777766653100 000000
Q ss_pred cCcceeeeccCCceE---EEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 360 IGSASSSSNKVSGVI---ERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 360 ~~~~~~~~~s~d~~v---~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...-...++--||.- .......+|+.++...+.. ...|.+++| ++..+++-..||.|.+|....+
T Consensus 389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~--~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL--PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CccCceEEEEEeCCeEEEecccccCCCchHhceEEcC--CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 000011122223321 1222333444444433322 368999999 3555999999999999996543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-06 Score=71.61 Aligned_cols=294 Identities=10% Similarity=0.082 Sum_probs=164.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeee-eEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKG-LCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~ 201 (430)
+++.|+..+.+.--|..+|....+-.....+..-++- -|++++ ++..|.+++.+.++++..+.......+.+ ..+.+
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~ 103 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDF 103 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcC
Confidence 8888999999999999999888765554444443333 355555 99999999999999976544333322222 33445
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc--eeEEEecCCCCCe
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGI 278 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v 278 (430)
++..+..|+.|+..+..|..+..++...+--.+...+-++.++ ..++.+...|.+.--...+.. .+.... ..+++
T Consensus 104 ~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~--~~~Pi 181 (354)
T KOG4649|consen 104 DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAAT--RFGPI 181 (354)
T ss_pred CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhh--cCCcc
Confidence 5666999999999999999999998877644333334445553 556666666766655555442 222111 12233
Q ss_pred EE--EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee-CCCCeEEEEcCCC--------eEEEEEc
Q 014104 279 KT--LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ-NDTSTLVVGGIDG--------VLRVLDQ 347 (430)
Q Consensus 279 ~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s-~~~~~l~s~~~dg--------~i~vwd~ 347 (430)
.+ ++. +..+..+.-||.+.-+| ..|+.+.++.. .++|+.--+-+ |..+.+..+..+. .-.+|..
T Consensus 182 F~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~ 256 (354)
T KOG4649|consen 182 FASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPAT-KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWAT 256 (354)
T ss_pred ccCceec---cceEEEEEeccEEEEEc-CCCcEEEeecC-CCceecccccCCCcceEEEEecCCeEEEeccccceEEEEe
Confidence 22 111 23455556677666666 44555554332 23332211111 3323333333322 2346777
Q ss_pred CCCceEEEEE-------eccC----cceeeeccCCceEEEeecccc-c----CCcccccCCC-CCCCCeeE--EEEcCeE
Q 014104 348 NTGEVLSRCV-------MDIG----SASSSSNKVSGVIERNEGRRL-S----AGCCIDRIPK-TIRPPITC--LAVGMKK 408 (430)
Q Consensus 348 ~~~~~~~~~~-------~~~~----~~~~~~~s~d~~v~~~~~~~~-~----~~~~~~~~~~-~h~~~v~~--v~~~~~~ 408 (430)
++|....... .|.- ...+...+.||.+.+...... . .+.+++.+.. .-++.|.+ +-++ .+
T Consensus 257 ~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~-gr 335 (354)
T KOG4649|consen 257 QSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAIELSNEIFSSPVIID-GR 335 (354)
T ss_pred cCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEeecCcccccCCeEEc-cE
Confidence 7764433332 2322 225667788898865432211 1 1111111100 00011111 1123 45
Q ss_pred EEEeeCCCeEEEEEecCC
Q 014104 409 VVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 409 l~t~~~Dg~v~vw~~~~~ 426 (430)
|+.|+.|..|+-||+++.
T Consensus 336 l~igcRDdYv~cldl~~~ 353 (354)
T KOG4649|consen 336 LLIGCRDDYVRCLDLDTW 353 (354)
T ss_pred EEEEEccCeEEEEecccc
Confidence 888899999999999864
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-07 Score=89.92 Aligned_cols=279 Identities=14% Similarity=0.103 Sum_probs=169.1
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-----eeEEE--Ee-cC-CCEEEEEeCCeEEEEEcCCCcccccCC
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----ASLVD--FD-FD-ESKIVGLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~--~~-~~-~~~l~~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
.+.++.++.++.++.+.-.|..+|+.+..+..... ...+. .. .+ +..++++.++.|.-+|.++++.++...
T Consensus 58 vv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 58 LVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFG 137 (488)
T ss_pred EEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeec
Confidence 34577888888899999999999998877764322 00010 11 13 444458889999999999998765543
Q ss_pred CCcee-----eeeEEEEcCCceEEEe---------cCCeEEEEECCCCeeeEEeecCCC--------------------C
Q 014104 190 EGTFM-----KGLCMRYFDPEAVVGC---------EDGTARVFDMYSRKCSQIIRMHCA--------------------P 235 (430)
Q Consensus 190 ~~~~~-----~~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~--------------------~ 235 (430)
..... ........+..++.++ .+|.+..+|..+|+.+..++.... .
T Consensus 138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 32210 0011111233455554 368899999999998887754211 0
Q ss_pred e-EEEEecC-CCEEEEEeCCC------------------eEEEEeCCCCceeEEEecCCCC-----CeEEEEEe----cC
Q 014104 236 V-TSLSLSE-DQLIISGSSLG------------------SIAISGLSSDQRVATLRSTDCT-----GIKTLCYN----PC 286 (430)
Q Consensus 236 i-~~~~~~~-~~~l~~~~~dg------------------~i~vwd~~~~~~~~~~~~~~~~-----~v~~~~~~----~~ 286 (430)
+ ...++.+ +..++.++.++ .+.-+|..+|+.+..+...+.. ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1233433 36777777665 7999999999999887632210 00001111 13
Q ss_pred CC---EEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE------------------cCCCeEEEE
Q 014104 287 SR---LVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG------------------GIDGVLRVL 345 (430)
Q Consensus 287 ~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~------------------~~dg~i~vw 345 (430)
|. .+++++.+|.+..+|.++|+.+....... ..+. .+| ..++.+ ..+|.|.-.
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~-~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMA-YDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccc-cCC--ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 33 67788899999999999999988765321 1222 333 223332 246788888
Q ss_pred EcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecC
Q 014104 346 DQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
|+.+|+.+.+......... + .. ... .....+...+..|+.++.||.|..+|.++
T Consensus 372 D~~tG~~~W~~~~~~~~~~---------------~---------~~-g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDS---------------W---------NI-GFP-HWGGSLATAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred eCCCCcEeeEeeCCccccc---------------c---------cc-CCc-ccCcceEecCCeEEEECCCCeEEEEECCC
Confidence 9999988777654311000 0 00 000 01122445677788888899999989888
Q ss_pred CCcC
Q 014104 426 SDKY 429 (430)
Q Consensus 426 ~~~~ 429 (430)
|+.+
T Consensus 426 G~~l 429 (488)
T cd00216 426 GKEL 429 (488)
T ss_pred Ccee
Confidence 8754
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-08 Score=93.91 Aligned_cols=240 Identities=10% Similarity=0.105 Sum_probs=168.2
Q ss_pred EEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeec---CCceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 105 IDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSL---PNAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
-++|.||.+.|.-+.|+++ .|-|...+|.|.||-+-.|........ ...+.+++|..||..+. ...||.|.+=.
T Consensus 64 NQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 64 NQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 3578999999999999654 888899999999999887754433222 24466689999999998 88999999888
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-------eeEE----eecCCCCeEEEEec-----
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-------CSQI----IRMHCAPVTSLSLS----- 242 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~----~~~~~~~i~~~~~~----- 242 (430)
+++.+.--....+.....+.++++...++.+-.+|.+.++|.+..- +... +......|..+.|.
T Consensus 144 vdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 144 VDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred eccceecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 8876643333333333445666666667788888999999975331 1111 11112235556554
Q ss_pred ---CC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---------CeEEEEeCCCCce
Q 014104 243 ---ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---------GYASCWDLRTMKS 309 (430)
Q Consensus 243 ---~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~ 309 (430)
|+ ..++.+..+|.+.+-.-.+......+. ..-.+....|+++|..|++++.+ +.|.+|..- |+.
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i 300 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHI 300 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhh
Confidence 24 478889999988887655444333343 23478889999999999988754 246666543 778
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+.+++.....|+++. |-..|-.++.+ .|+.|++=+++.
T Consensus 301 ~gtlkvpg~~It~ls-WEg~gLriA~A-vdsfiyfanIRP 338 (1189)
T KOG2041|consen 301 VGTLKVPGSCITGLS-WEGTGLRIAIA-VDSFIYFANIRP 338 (1189)
T ss_pred eEEEecCCceeeeeE-EcCCceEEEEE-ecceEEEEeecc
Confidence 888888888999998 76666666555 588898887763
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.6e-07 Score=95.26 Aligned_cols=233 Identities=12% Similarity=0.094 Sum_probs=149.4
Q ss_pred EEEec--CC-eEEEEeCCCeEEEEecCCCeeEEeeecC---------------CceeEEEEecCCCEEE-EE-eCCeEEE
Q 014104 117 QCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP---------------NAASLVDFDFDESKIV-GL-IGTRICI 176 (430)
Q Consensus 117 ~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~-~~-~~~~i~v 176 (430)
.++++ ++ .+++-+.++.|.++|... +.+..+... .....++++++++.|+ +. ..+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 34552 35 566667788999999765 444333321 1245588888888665 33 3467999
Q ss_pred EEcCCCccc-ccCC--------CC--------ceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecC------
Q 014104 177 WRRNGLRSV-FPSR--------EG--------TFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMH------ 232 (430)
Q Consensus 177 wd~~~~~~~-~~~~--------~~--------~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~------ 232 (430)
+|..++... +... .+ .....+++.+.+.. +++.+.++.|++||..++... .+.+.
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL 729 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence 998776531 1110 00 01123455553444 566677889999998776542 22111
Q ss_pred ---------CCCeEEEEecCC-C-EEEEEeCCCeEEEEeCCCCceeEEEec------------C--------CCCCeEEE
Q 014104 233 ---------CAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVATLRS------------T--------DCTGIKTL 281 (430)
Q Consensus 233 ---------~~~i~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~~~~~------------~--------~~~~v~~~ 281 (430)
-.....++++|+ + ++++-+.++.|++||+.++.......+ . .......+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 123457889875 5 556667789999999987653211100 0 01135689
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-------------cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 282 CYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-------------ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 282 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-------------~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+++++|+.+++-..++.|++||..++....... +.......++ ++++|+.+++-+.++.|++||+.
T Consensus 810 avd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 810 LCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLA-LGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEE-EeCCCCEEEEECCCCEEEEEECC
Confidence 999999988888899999999998765542211 1112466787 99999988998999999999999
Q ss_pred CCce
Q 014104 349 TGEV 352 (430)
Q Consensus 349 ~~~~ 352 (430)
+++.
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 8765
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.2e-10 Score=94.18 Aligned_cols=150 Identities=17% Similarity=0.205 Sum_probs=117.6
Q ss_pred EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCC-----ceeEEEecCCCCCeEE
Q 014104 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSD-----QRVATLRSTDCTGIKT 280 (430)
Q Consensus 207 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~~v~~ 280 (430)
++.+.+-.|-+-|+++|.. +.+. ..+.|.++.|.. ++++..|+.+|.|...|++.+ .+...+. |+..|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhh
Confidence 4455666788889888743 2333 567888899984 689999999999999999864 4566666 8888999
Q ss_pred EEEec-CCCEEEEEeCCCeEEEEeCCCCce---eeeeecCCCceEEEE-EeeCCCCeEEEEcCCCeEEEEEcCCCceEEE
Q 014104 281 LCYNP-CSRLVFAGTTAGYASCWDLRTMKS---LWETRISPNVVYSLQ-HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 281 ~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~l~-~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 355 (430)
+..-. ++++|++.+.+|+|++||.+.-++ +.++++|-..-.-+- ...+....+++++.|...+||.+++|.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 87765 778999999999999999997666 888888863322211 2567778899999999999999999999998
Q ss_pred EEecc
Q 014104 356 CVMDI 360 (430)
Q Consensus 356 ~~~~~ 360 (430)
++...
T Consensus 384 ipf~~ 388 (425)
T KOG2695|consen 384 IPFPY 388 (425)
T ss_pred cCCCC
Confidence 87643
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.4e-07 Score=88.42 Aligned_cols=322 Identities=14% Similarity=0.111 Sum_probs=204.5
Q ss_pred eEEEEeccccceeEEEec-----------C--C-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEec---CC-C
Q 014104 104 DIDQWKAHSVGVDQCRMK-----------R--G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDF---DE-S 164 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-----------~--~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~---~~-~ 164 (430)
.++++.-|+..|+.+.|. . . .||++...|.|.+||...+..+..+..+ ..+.-++|-+ +. .
T Consensus 47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh
Confidence 566788899999999871 1 1 6788888999999999988888777765 4455577765 33 2
Q ss_pred EEE-EEeCCeEEEEEcCCCcccccCCCCc-eeeeeEEEEcCCc-eEEEecCCeEEEEECC-------CCeeeEEeecCCC
Q 014104 165 KIV-GLIGTRICIWRRNGLRSVFPSREGT-FMKGLCMRYFDPE-AVVGCEDGTARVFDMY-------SRKCSQIIRMHCA 234 (430)
Q Consensus 165 ~l~-~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~-------~~~~~~~~~~~~~ 234 (430)
.|+ ......+.+|+..+|+..+...-++ +...+.+.++++. +..-+..|.+.+-+.- .++..+.-..|.+
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sd 206 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSD 206 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccc
Confidence 344 7778999999999999776654443 3333555555555 6666666777666542 1233333322221
Q ss_pred ----------------C---------eEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC-
Q 014104 235 ----------------P---------VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS- 287 (430)
Q Consensus 235 ----------------~---------i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~- 287 (430)
. ...++|+|. +.++.......+.++|++-..++....- ..+.+.-+.+-|++
T Consensus 207 l~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi-er~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 207 LAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI-ERGGAKFVDVLPDPR 285 (1062)
T ss_pred hhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe-ccCCcceeEeccCCC
Confidence 0 012455664 3344445677899999998888877765 44455566666655
Q ss_pred -CEEEEEeCCCeEEEEeCCC----------------Cceee-----------------------------------eee-
Q 014104 288 -RLVFAGTTAGYASCWDLRT----------------MKSLW-----------------------------------ETR- 314 (430)
Q Consensus 288 -~~l~~~~~dg~i~i~d~~~----------------~~~~~-----------------------------------~~~- 314 (430)
..|++...||.+.+|-.+. ++... ++.
T Consensus 286 rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 286 RDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred cceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 5788999999999986543 10000 000
Q ss_pred ---------------------------------------cCCCceEEEE----------EeeCCC-------CeEEEEcC
Q 014104 315 ---------------------------------------ISPNVVYSLQ----------HLQNDT-------STLVVGGI 338 (430)
Q Consensus 315 ---------------------------------------~~~~~v~~l~----------~~s~~~-------~~l~s~~~ 338 (430)
+|.....+.. ...|.+ .+++.|..
T Consensus 366 ~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~ 445 (1062)
T KOG1912|consen 366 GRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTN 445 (1062)
T ss_pred CCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecC
Confidence 0111111111 011222 26788999
Q ss_pred CCeEEEEEcCCCceEEEEEeccCccee---------eeccCC------c-eEEEeecccccCC--cccccCCCCCCCCee
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASS---------SSNKVS------G-VIERNEGRRLSAG--CCIDRIPKTIRPPIT 400 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~---------~~~s~d------~-~v~~~~~~~~~~~--~~~~~~~~~h~~~v~ 400 (430)
.|+|.++|+.++...+.+..|+..+.. ++++-. | ......+-++.++ ..++.+++.-+.+|+
T Consensus 446 sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~ 525 (1062)
T KOG1912|consen 446 SGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIR 525 (1062)
T ss_pred CceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcce
Confidence 999999999999888888888776522 222211 1 1112223344443 445666677778999
Q ss_pred EEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 401 CLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 401 ~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+.. .++|++..=.|.-+-+||+++-
T Consensus 526 ~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 526 AIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred eeeecccCceEEEEecccchHHHhhccc
Confidence 9888 4999999999999999998653
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-09 Score=90.98 Aligned_cols=247 Identities=11% Similarity=0.073 Sum_probs=167.5
Q ss_pred cccceeEEEec-CCeEEEEeCCCeEEEEecCC---CeeEEeeecC-CceeEEEEecCCCEEE-EEe-CCeEEEEEcCCCc
Q 014104 111 HSVGVDQCRMK-RGLILTGVGDKVMRLWSLEG---YKCVEEYSLP-NAASLVDFDFDESKIV-GLI-GTRICIWRRNGLR 183 (430)
Q Consensus 111 h~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~-~~~i~vwd~~~~~ 183 (430)
|.+.|+.+... -+++++++.||.++.|.-.. -+.++.+..| ..+..++.+.++..+. .+. |..++++|+++-.
T Consensus 8 hrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~D 87 (558)
T KOG0882|consen 8 HRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFD 87 (558)
T ss_pred ccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccc
Confidence 78888887764 45999999999999997543 1333444444 3344577788887777 355 8999999998765
Q ss_pred ccccCCCCceeeeeEEEEcCCc----eE-EEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 184 SVFPSREGTFMKGLCMRYFDPE----AV-VGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~----l~-~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
.+-...........+|.....+ ++ +.-.+|.+.++|-.... ....-+-|..+|..+.+++. +.+++....|.
T Consensus 88 minmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm 167 (558)
T KOG0882|consen 88 MINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM 167 (558)
T ss_pred hhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce
Confidence 3311111111122344443332 33 33457899999976443 23334568999999999974 78888888999
Q ss_pred EEEEeCCC------CceeEEEec--------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec------
Q 014104 256 IAISGLSS------DQRVATLRS--------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI------ 315 (430)
Q Consensus 256 i~vwd~~~------~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------ 315 (430)
|.-|.... .+....++. .......++.|+|+|..+.+-+.|..|++++.++++.++++..
T Consensus 168 VEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~ 247 (558)
T KOG0882|consen 168 VEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQ 247 (558)
T ss_pred eEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhh
Confidence 99999762 111111110 0234678999999999999999999999999998866544321
Q ss_pred --------------------------CCCc-eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 316 --------------------------SPNV-VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 316 --------------------------~~~~-v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
|... -..+. |...|++|+-|+-=| |++.++.++++++.+-..
T Consensus 248 ~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~-fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 248 YQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAV-FDESGNFLLYGTILG-IKVINLDTNTVVRILGKD 316 (558)
T ss_pred hccccccccceeehhhhhhHHhhHhhhcCcccceeE-EcCCCCEEEeeccee-EEEEEeecCeEEEEeccc
Confidence 2221 22333 888899999887665 999999999988877543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=91.61 Aligned_cols=153 Identities=9% Similarity=0.073 Sum_probs=104.8
Q ss_pred EEEecCC-CEEEEEeCCCeEEEEeCCCCce----eEEEecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEeCCCCce
Q 014104 238 SLSLSED-QLIISGSSLGSIAISGLSSDQR----VATLRSTDCTGIKTLCYNPCSRLVFAGT---TAGYASCWDLRTMKS 309 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~ 309 (430)
.+..+++ .+++.+..+....+++...... +.... ....-+++.|..+......+. ....+.+|....+.+
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~--v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC--VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee--cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 3444444 6777777777766777654332 22222 222344555554544444443 344455555554433
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
..+-+|-..++.++ ++||+++++++..|..|++-.......+..+
T Consensus 145 -~~~lGhvSml~dVa-vS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--------------------------------- 189 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVA-VSPDDQFIITADRDEKIRVSRYPATFVIESF--------------------------------- 189 (390)
T ss_pred -chhhhhhhhhheee-ecCCCCEEEEecCCceEEEEecCcccchhhh---------------------------------
Confidence 34568989999999 9999999999999999999877644444443
Q ss_pred cCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 390 RIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+.+|..-|..++. ++..|++||.|++|++||+.+|+.+
T Consensus 190 --clGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 190 --CLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred --ccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcc
Confidence 4578889999999 6777899999999999999999764
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-07 Score=78.25 Aligned_cols=203 Identities=17% Similarity=0.163 Sum_probs=131.9
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCCc------ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee
Q 014104 157 VDFDFDESKIVGLIGTRICIWRRNGLR------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 157 ~~~~~~~~~l~~~~~~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 230 (430)
++.+.+|+.|+.-.|..|.+-..+..- ..........-.-++|++++..++.+...|+|+++|+.. ..+..+.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcC
Confidence 345567777777777777666554322 112222233334577888888899999999999999964 4333443
Q ss_pred cC-------CCCeEEEEecCC-------CEEEEEeCCCeEEEEeCCCC-----ceeE--EEecCCCCCeEEEEEecCCCE
Q 014104 231 MH-------CAPVTSLSLSED-------QLIISGSSLGSIAISGLSSD-----QRVA--TLRSTDCTGIKTLCYNPCSRL 289 (430)
Q Consensus 231 ~~-------~~~i~~~~~~~~-------~~l~~~~~dg~i~vwd~~~~-----~~~~--~~~~~~~~~v~~~~~~~~~~~ 289 (430)
.. ..+|..|.|.+. ..|++-..+|.++-|-+..+ +..+ .+..+....|.++.++|..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 21 246677777531 24666677888777765322 2222 333445668999999999998
Q ss_pred EEEEeCC----C-------eEEEEeCCCCceee-----------------------ee------ecCCCceEEEEEeeCC
Q 014104 290 VFAGTTA----G-------YASCWDLRTMKSLW-----------------------ET------RISPNVVYSLQHLQND 329 (430)
Q Consensus 290 l~~~~~d----g-------~i~i~d~~~~~~~~-----------------------~~------~~~~~~v~~l~~~s~~ 329 (430)
|++|+.. + -+..|.+-++.+.. .+ ....+.|..|. .|||
T Consensus 162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmS-lSPd 240 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMS-LSPD 240 (282)
T ss_pred EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEE-ECCC
Confidence 8877532 1 26667654331110 00 01246788998 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
|..||+...+|.|.+|++.+-++.+.+..+.+
T Consensus 241 g~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 241 GSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred CCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 99999999999999999998888887775544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-07 Score=81.62 Aligned_cols=204 Identities=14% Similarity=0.135 Sum_probs=142.3
Q ss_pred EeCCCeEEEEecCCCeeEEeeecC-------Cce------eEEE-Eec-CCCEEEEEeCCeEEEEEcCCCcccccCCCCc
Q 014104 128 GVGDKVMRLWSLEGYKCVEEYSLP-------NAA------SLVD-FDF-DESKIVGLIGTRICIWRRNGLRSVFPSREGT 192 (430)
Q Consensus 128 ~~~dg~i~iwd~~~~~~~~~~~~~-------~~~------~~~~-~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~ 192 (430)
=+..|.|.++|.++... ..+... ... ..+. |++ +|++++.-+-|+..+.+...+-.+...+.+.
T Consensus 283 Fq~~GdIylydP~td~l-ekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~ 361 (668)
T COG4946 283 FQNAGDIYLYDPETDSL-EKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKKGG 361 (668)
T ss_pred EecCCcEEEeCCCcCcc-eeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCCCc
Confidence 34557799999877433 222211 001 1111 333 6778887777888888877766555555444
Q ss_pred eeeeeEEEEcCCceEEEecCC-eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEE
Q 014104 193 FMKGLCMRYFDPEAVVGCEDG-TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL 270 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~ 270 (430)
+....+...++.++.|..|| .+-++|.++++. +.+...-+.|.+++.+++ ..++.+.....+.+.|+.+++....-
T Consensus 362 -VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id 439 (668)
T COG4946 362 -VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID 439 (668)
T ss_pred -eEEEEEccCCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence 34455555566699999999 899999987764 455556789999999976 78888888899999999998864433
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCC----eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 271 RSTDCTGIKTLCYNPCSRLVFAGTTAG----YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+ ...+-|+.++|+|+++++|-+-.+| .|++||+.+++....-. ..+.=.+-+ |.|++++|.--+
T Consensus 440 k-S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPa-FD~d~ryLYfLs 507 (668)
T COG4946 440 K-SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPA-FDPDGRYLYFLS 507 (668)
T ss_pred c-cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcc-cCCCCcEEEEEe
Confidence 3 3566899999999999999876665 59999999877654322 223334555 889999876544
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.4e-07 Score=79.54 Aligned_cols=192 Identities=10% Similarity=0.093 Sum_probs=136.2
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCCccc-cc-------CC-CCceeeee----EEEEc-CCceEEEecCCeEEEEECCC
Q 014104 157 VDFDFDESKIVGLIGTRICIWRRNGLRSV-FP-------SR-EGTFMKGL----CMRYF-DPEAVVGCEDGTARVFDMYS 222 (430)
Q Consensus 157 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~-------~~-~~~~~~~~----~~~~~-~~~l~~~~~dg~i~vwd~~~ 222 (430)
-..+.||+.++-+..|.|.+||.++.... +. .. ........ .++.. +..++..+ .|...+.+...
T Consensus 272 R~~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~ 350 (668)
T COG4946 272 RNANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWD 350 (668)
T ss_pred cccCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCC
Confidence 44567899999999999999999876521 10 00 00110000 12222 33344444 46777777655
Q ss_pred CeeeEEeecCCCCeEEEEec-CCCEEEEEeCCC-eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 223 RKCSQIIRMHCAPVTSLSLS-EDQLIISGSSLG-SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
+-.++. +|.+.|.-..+. .++-++.|..|| .+-++|.++++..+... .-+.|.++..+|+|++++++.....+-
T Consensus 351 ~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~--~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 351 GYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK--DLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC--CccceEEEEEcCCCcEEEEEcCceEEE
Confidence 544432 466778777776 335788888898 89999999877654444 566899999999999999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC----eEEEEEcCCCceEE
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG----VLRVLDQNTGEVLS 354 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg----~i~vwd~~~~~~~~ 354 (430)
++|+.+++....-+...+-|+... |+|+++++|-+--+| .|+++|+..++...
T Consensus 427 vididngnv~~idkS~~~lItdf~-~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 427 VIDIDNGNVRLIDKSEYGLITDFD-WHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEEecCCCeeEecccccceeEEEE-EcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 999999987655555568899999 999999999877665 58999999766543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.7e-09 Score=91.58 Aligned_cols=152 Identities=15% Similarity=0.202 Sum_probs=112.6
Q ss_pred EecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-----ceeee
Q 014104 240 SLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM-----KSLWE 312 (430)
Q Consensus 240 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~ 312 (430)
+|+-+ .+-++.+.+..|-+-|+++|.. +.|. ..+.|.++.|...+++++.|+.+|.|..+|++.. .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~-qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQ-QSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeecccc-cccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 55522 2335666778888999988754 3343 4557999999988999999999999999999864 23333
Q ss_pred eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce---EEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 313 TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV---LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
-.|.+.|+++.....++++|++.+.+|+|++||.+.-++ +.++.+|.+.
T Consensus 295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~--------------------------- 346 (425)
T KOG2695|consen 295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNL--------------------------- 346 (425)
T ss_pred -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccc---------------------------
Confidence 348889999985555889999999999999999987666 8888877651
Q ss_pred cCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 390 RIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
|..--..|.-....++++|+|...|||.++.|.
T Consensus 347 -----~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 347 -----SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred -----ccccccccccccceEEEccCeeEEEEEecccCc
Confidence 111111122245678899999999999998764
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-07 Score=84.85 Aligned_cols=179 Identities=10% Similarity=-0.062 Sum_probs=106.0
Q ss_pred CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc--e-EEEecC--CeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C
Q 014104 172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE--A-VVGCED--GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q 245 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--l-~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~ 245 (430)
..|.+.|.++...............-.|++++.. + ++...+ ..|.+.++.+++.... ....+.....+|+|+ +
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCC
Confidence 3677778777653322222222334578888765 2 244444 3588889987765433 334455567899987 5
Q ss_pred EEEEEeC-----CCeEEEEeCCCC---ceeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCe--EEEEeCCC-Cceeeee
Q 014104 246 LIISGSS-----LGSIAISGLSSD---QRVATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGY--ASCWDLRT-MKSLWET 313 (430)
Q Consensus 246 ~l~~~~~-----dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~--i~i~d~~~-~~~~~~~ 313 (430)
.|+..+. +..+..||+.++ +....... ........+|+|||+.|+..+ .+|. |+++++.. +.....+
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-AFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecC-CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 6665442 234455777653 33333322 223446789999999877654 4564 44445432 2333344
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceE
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVL 353 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~ 353 (430)
..+...+.... |+|||+.|+..+.+ ..|.+||+.+++..
T Consensus 323 t~~~~~~~~p~-wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~ 364 (428)
T PRK01029 323 TKKYRNSSCPA-WSPDGKKIAFCSVIKGVRQICVYDLATGRDY 364 (428)
T ss_pred ccCCCCcccee-ECCCCCEEEEEEcCCCCcEEEEEECCCCCeE
Confidence 44445566777 99999988876543 47999999887654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=83.07 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=88.8
Q ss_pred CeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC-CCE
Q 014104 213 GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC-SRL 289 (430)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ 289 (430)
+..+.|+++..+.+..-+.....|.+++-+|. +++++|+.||.+-+||.++......+...|..++..+.|+|. +..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 34566666543322221222334888888875 688999999999999999876655555558889999999984 578
Q ss_pred EEEEeCCCeEEEEeCCCCceee------------------e---eec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 290 VFAGTTAGYASCWDLRTMKSLW------------------E---TRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~~~~~------------------~---~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
|+++++||.+-.||..+ +.+. . +.+ -.....++..|.--|..|++|+.-+.|++++
T Consensus 239 Lft~sedGslw~wdas~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeEecCCCcEEEEcCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 99999999999999873 1111 0 000 0112223333445677888888778787764
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=85.49 Aligned_cols=144 Identities=14% Similarity=0.250 Sum_probs=99.3
Q ss_pred eEEEecCCeEEEEECCCC-ee--eEEeecC-----CCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeE----EEe
Q 014104 206 AVVGCEDGTARVFDMYSR-KC--SQIIRMH-----CAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVA----TLR 271 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~-~~--~~~~~~~-----~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~----~~~ 271 (430)
......|=.|.+|+++-- +. +..++.+ +.-|++..|+|. +.++-.+..|+|++-|++.....- .+.
T Consensus 178 t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE 257 (433)
T KOG1354|consen 178 TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE 257 (433)
T ss_pred eEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc
Confidence 333445667889987632 22 2222222 346889999985 788888999999999998533211 111
Q ss_pred cC-----------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeC-CCCceeeeeecCCC------------ce---EEEE
Q 014104 272 ST-----------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDL-RTMKSLWETRISPN------------VV---YSLQ 324 (430)
Q Consensus 272 ~~-----------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~------------~v---~~l~ 324 (430)
.. --..|..+.|+++|+++++-.. -+|++||+ ...+++.+++.|.. .| ..++
T Consensus 258 epedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred cccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 10 1126889999999999998755 46999999 45677777666631 12 3344
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
|+-++.+++||+..+.++++++..|.
T Consensus 337 -~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 337 -WSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred -EcCCcceEecccccceEEEecCCCCc
Confidence 78888899999999999999977654
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-07 Score=75.52 Aligned_cols=225 Identities=11% Similarity=-0.018 Sum_probs=141.9
Q ss_pred CCeEEEEeCCCeEEEEecCCCeeEEe-eecC-CceeEEE-Eec-CCCEEEEEeCCeEEEEEcCCCcccccCCCCc-eeee
Q 014104 122 RGLILTGVGDKVMRLWSLEGYKCVEE-YSLP-NAASLVD-FDF-DESKIVGLIGTRICIWRRNGLRSVFPSREGT-FMKG 196 (430)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~-~~~~~~~-~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~ 196 (430)
.++||.|+.-|...+|...+.+.... ...+ ..+.... ..- .-..++++.|.++++.+++.+...+..+... ....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 45999999999999999886543322 2222 2222211 111 1223448889999999988776554444442 2233
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCC-e-eeEEe-ecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeE----
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSR-K-CSQII-RMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVA---- 268 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~-~-~~~~~-~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~---- 268 (430)
..++.++..+++.+....|..|.+... + .+.+. ....+.=.+..|+. +..+|+++.||++.|||++......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 455556666888888889999987543 2 22312 22334446778884 5799999999999999999754432
Q ss_pred EEecCCCCCeEEEEEecCCC--EEEEEeCCCeEEEEeCCCCceeeeeec-------CC-CceEEEEEeeCCCCeEEEEcC
Q 014104 269 TLRSTDCTGIKTLCYNPCSR--LVFAGTTAGYASCWDLRTMKSLWETRI-------SP-NVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~-------~~-~~v~~l~~~s~~~~~l~s~~~ 338 (430)
.-+.+|.+.+..+.|++.|. +|+..-.-+.+.+.|+++++....+.. |. ..++... |+.++..+.+.++
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~-f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTN-FNNENESNDVKNE 322 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccccccccccc-ccCCCcccccccc
Confidence 22345888999999998763 555555567899999999865544332 22 2366665 6666665555544
Q ss_pred CCeEEEEEcC
Q 014104 339 DGVLRVLDQN 348 (430)
Q Consensus 339 dg~i~vwd~~ 348 (430)
+ .+.=|++.
T Consensus 323 ~-~~ae~ni~ 331 (344)
T KOG4532|consen 323 L-QGAEYNIL 331 (344)
T ss_pred h-hhheeecc
Confidence 3 34445544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-06 Score=77.08 Aligned_cols=254 Identities=10% Similarity=0.112 Sum_probs=155.3
Q ss_pred ceeEEEe-cCC-eEEEEeCCC---------------eEEEEecCCCeeEEeeecCCce----eEEEEecCCCEEEEEeCC
Q 014104 114 GVDQCRM-KRG-LILTGVGDK---------------VMRLWSLEGYKCVEEYSLPNAA----SLVDFDFDESKIVGLIGT 172 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 172 (430)
.|.-+.| |++ ||.|=+..+ .+.+||+.+|..+..+...... ..+.|+.+..+++--...
T Consensus 73 ~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~ 152 (561)
T COG5354 73 DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGS 152 (561)
T ss_pred CceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccC
Confidence 4566667 444 777754433 4999999999999998875333 468899999998855778
Q ss_pred eEEEEEcCCCccc--ccCCCCceeeeeEEEEcCC--ceEE-----EecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC
Q 014104 173 RICIWRRNGLRSV--FPSREGTFMKGLCMRYFDP--EAVV-----GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243 (430)
Q Consensus 173 ~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~--~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~ 243 (430)
.+.++++...-.. +..........+.+++-++ .|+. .+..+.+++|.+..+..+.+-.-....=..+.|++
T Consensus 153 sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~ 232 (561)
T COG5354 153 SLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQV 232 (561)
T ss_pred eEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEec
Confidence 8999997222111 1111111122234444322 2332 45678899999876665544332223334566664
Q ss_pred -CCEEEEE----e-------CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCce
Q 014104 244 -DQLIISG----S-------SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKS 309 (430)
Q Consensus 244 -~~~l~~~----~-------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~ 309 (430)
+++++.- . ....+.+++++.. .+..... ..++|...+|.|.++.+++ |..+..+.++|++.. .
T Consensus 233 ~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~-~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l 309 (561)
T COG5354 233 LGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKD-LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L 309 (561)
T ss_pred CCceEEEEEEEeeecccceeccceEEEEeeccc-ccceecc-ccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence 3332211 0 1346788888733 3333322 5679999999999887664 457888999999955 4
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceEE-EEEeccCcceeeeccCCceEE
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVLS-RCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~s~d~~v~ 375 (430)
...+ ....-..+. |+|.+++++.++-| |.+-+||......+. .+.+. .....-+++|+...
T Consensus 310 ~~~~--Pe~~rNT~~-fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~ 374 (561)
T COG5354 310 RFYF--PEQKRNTIF-FSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFY 374 (561)
T ss_pred EEec--CCccccccc-ccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEE
Confidence 3333 233445555 99999999998755 789999988554433 44332 22334456666553
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-09 Score=96.76 Aligned_cols=153 Identities=14% Similarity=0.248 Sum_probs=115.3
Q ss_pred CCceEEEecCCeEEEEECCC-------CeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec-C
Q 014104 203 DPEAVVGCEDGTARVFDMYS-------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS-T 273 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~ 273 (430)
.+.+++++.|.+|++|.++. ..|..++..|+.+|.++.|-.+ .++++ -||.|.+||.--++.+..+.. .
T Consensus 747 ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dap 824 (1034)
T KOG4190|consen 747 ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAP 824 (1034)
T ss_pred ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCc
Confidence 33499999999999998863 3477888999999999999865 56654 489999999887777654432 1
Q ss_pred CCCCeEEEEEec--CCCEEEEE-eCCCeEEEEeCCCCceeeeeecC-----CCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 274 DCTGIKTLCYNP--CSRLVFAG-TTAGYASCWDLRTMKSLWETRIS-----PNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 274 ~~~~v~~~~~~~--~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~-----~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
..+.+..+..-| +...+++| +...+|+++|.+.++-..+++.. .+.+.+++ ..+.|++++++-.+|.|.+.
T Consensus 825 k~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia-Va~~GN~lAa~LSnGci~~L 903 (1034)
T KOG4190|consen 825 KEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA-VADKGNKLAAALSNGCIAIL 903 (1034)
T ss_pred ccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE-eccCcchhhHHhcCCcEEEE
Confidence 222333333333 34455555 67889999999998766665533 35678888 88999999999999999999
Q ss_pred EcCCCceEEEEEe
Q 014104 346 DQNTGEVLSRCVM 358 (430)
Q Consensus 346 d~~~~~~~~~~~~ 358 (430)
|.++|+.+..+..
T Consensus 904 DaR~G~vINswrp 916 (1034)
T KOG4190|consen 904 DARNGKVINSWRP 916 (1034)
T ss_pred ecCCCceeccCCc
Confidence 9999999887764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.6e-06 Score=78.07 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=119.9
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc--eeE----------EEEecCCCEEEEEeCCeEEEEEcCCCccccc
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA--ASL----------VDFDFDESKIVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~----------~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
+.++.++.++.++.|.-.|..+|+.+..+..... ... +++ .++..++++.++.+.-+|.++++.+..
T Consensus 67 v~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av-~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 67 VVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL-YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred EECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE-ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 3477888888889999999999999887764321 110 111 133444488899999999999987655
Q ss_pred CCCCcee---ee-eEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCC------------------------
Q 014104 188 SREGTFM---KG-LCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHC------------------------ 233 (430)
Q Consensus 188 ~~~~~~~---~~-~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~------------------------ 233 (430)
....... .. ..-...+..++++.. +|.|..+|.++|+.+..+..-.
T Consensus 146 ~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred cccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 4322110 00 011112334555543 6899999999999876653211
Q ss_pred -------CCe-EEEEecCC-CEEEEEeCC-----C-----------eEEEEeCCCCceeEEEecCCCC--------CeEE
Q 014104 234 -------APV-TSLSLSED-QLIISGSSL-----G-----------SIAISGLSSDQRVATLRSTDCT--------GIKT 280 (430)
Q Consensus 234 -------~~i-~~~~~~~~-~~l~~~~~d-----g-----------~i~vwd~~~~~~~~~~~~~~~~--------~v~~ 280 (430)
+.+ ..+.+.+. ++++.+..+ + +|.-.|++||+....++..+.. ...-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 011 13355544 555555421 2 7788899999998887652221 1222
Q ss_pred EEEecCCC---EEEEEeCCCeEEEEeCCCCcee
Q 014104 281 LCYNPCSR---LVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 281 ~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
+.+..+|+ .++.+..+|.+++.|.++++++
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 33334665 7789999999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-05 Score=69.89 Aligned_cols=195 Identities=16% Similarity=0.157 Sum_probs=119.9
Q ss_pred EEEecCCCEE-EEE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec---
Q 014104 157 VDFDFDESKI-VGL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM--- 231 (430)
Q Consensus 157 ~~~~~~~~~l-~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--- 231 (430)
..|.+....| ++. ..+.|..|+..++......... ...+.+...+..++++...+ +.++|..+++.......
T Consensus 5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETT
T ss_pred eEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCC
Confidence 4556533333 333 4677788887777643322222 22233332344466666654 45559888865444432
Q ss_pred --CCCCeEEEEecCC-CEEEEEeCC--------CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCeE
Q 014104 232 --HCAPVTSLSLSED-QLIISGSSL--------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYA 299 (430)
Q Consensus 232 --~~~~i~~~~~~~~-~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i 299 (430)
.....+.+++.++ ++.++.... |.|..++.. ++...... .-.....++|+|+++.|+ +-+..+.|
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~~~~i 158 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSFNGRI 158 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETTTTEE
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeeccccccee
Confidence 2346788999976 544444332 567888877 55444443 234678999999999776 55677889
Q ss_pred EEEeCCCCce-------eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 300 SCWDLRTMKS-------LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 300 ~i~d~~~~~~-------~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
..|++..... ...+....+..-.++ +..+|++.++.-..+.|.++|.+ |+.+..+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~-vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 159 WRFDLDADGGELSNRRVFIDFPGGPGYPDGLA-VDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE-EBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S
T ss_pred EEEeccccccceeeeeeEEEcCCCCcCCCcce-EcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC
Confidence 9999863221 122222223467888 99999988887788999999987 9998888764
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=86.56 Aligned_cols=148 Identities=16% Similarity=0.187 Sum_probs=99.9
Q ss_pred eEEEecCCeEEEEECCCCee----eEEeecCCCCeEEEEec-CCCEEEE---EeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 206 AVVGCEDGTARVFDMYSRKC----SQIIRMHCAPVTSLSLS-EDQLIIS---GSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~~-~~~~l~~---~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
++++..+....+++...... +..... ...-+++.+. .+..+.. +++...+.+|....+.+.- +-+ |-..
T Consensus 77 lAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~-~lG-hvSm 153 (390)
T KOG3914|consen 77 VAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP-ILG-HVSM 153 (390)
T ss_pred EEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch-hhh-hhhh
Confidence 66666666666666544332 222221 1122333333 2222333 3445566666665544433 334 8889
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
++.++++||+++++++..|..|++-....-..+..+ -||..-|..++ .-+ +..|+++|.|++|++||+.+|+.+.++
T Consensus 154 l~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~is-l~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 154 LLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTIS-LTD-NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred hheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeee-ecc-CceeeecCCCCcEEEEecccCCccccc
Confidence 999999999999999999999999887765555554 46999999998 644 566999999999999999999998777
Q ss_pred Ee
Q 014104 357 VM 358 (430)
Q Consensus 357 ~~ 358 (430)
..
T Consensus 232 dl 233 (390)
T KOG3914|consen 232 DL 233 (390)
T ss_pred ch
Confidence 64
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-07 Score=90.26 Aligned_cols=177 Identities=15% Similarity=0.243 Sum_probs=132.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
++.|+....+..+|+++.+..+......+.|.-|.. ++..+.+|...|+|.+-|.++.+.++++.. |.+.|..+..
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~-Nnr~lf~G~t~G~V~LrD~~s~~~iht~~a-Hs~siSDfDv-- 225 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY-NNRNLFCGDTRGTVFLRDPNSFETIHTFDA-HSGSISDFDV-- 225 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEe-cCcEEEeecccceEEeecCCcCceeeeeec-cccceeeeec--
Confidence 777888788889999998888777655556776666 557899999999999999999999999998 8888887666
Q ss_pred CCCEEEEEeC---------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcCC-Cce-E
Q 014104 286 CSRLVFAGTT---------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQNT-GEV-L 353 (430)
Q Consensus 286 ~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~~-~~~-~ 353 (430)
.|+.|++++. |..|++||+++.+.+..+.-+.++ .-+. |.|. ...+++++..|...+-|..+ +.+ .
T Consensus 226 ~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr-f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 226 QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR-FHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh-hcccccceEEEEecccceeeccccccCCCcc
Confidence 7899998865 456899999998888776665444 2233 5553 34778888899999988432 111 2
Q ss_pred EEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEE
Q 014104 354 SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~ 422 (430)
..+..++. .+.+.++.+ +++.|+.|..+|.|.+|.
T Consensus 304 ~~~~v~p~----------------------------------~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 304 GVKMVNPN----------------------------------GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeEEccC----------------------------------CCcceeEEecCCCceEEEecccCcEeeec
Confidence 22222222 124666666 588999999999999997
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-06 Score=77.95 Aligned_cols=231 Identities=10% Similarity=0.122 Sum_probs=138.1
Q ss_pred ceeEEEecC-C-eEEEEeC-----------CCeEEEEecCCCeeEEeeecCCc----eeEEEEecCCCEEEEEeCCeEEE
Q 014104 114 GVDQCRMKR-G-LILTGVG-----------DKVMRLWSLEGYKCVEEYSLPNA----ASLVDFDFDESKIVGLIGTRICI 176 (430)
Q Consensus 114 ~v~~~~~~~-~-~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~i~v 176 (430)
.|.-+.|++ . ||+|=+. ...+.|||+.+|...+.|..... -....||.|+++++.-....|.|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI 330 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI 330 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence 356677744 4 9998654 25789999999999998886322 34589999999999766799999
Q ss_pred EEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEec-----CCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEE
Q 014104 177 WRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCE-----DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIIS 249 (430)
Q Consensus 177 wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~ 249 (430)
|+...-..+ .....-..+..+.|++.+..|+--.. -..+.+..+.+++.+++-.-|+-.-..+.|-. +++|..
T Consensus 331 yEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 331 YETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred EecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEE
Confidence 997763221 11111122233455555444332211 12455555656655555443332222333432 344432
Q ss_pred E----------eCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCC-C---ceee
Q 014104 250 G----------SSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRT-M---KSLW 311 (430)
Q Consensus 250 ~----------~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~-~---~~~~ 311 (430)
- +.-..+.|+.++... ++..+. ....|...+|.|.|+.+++-+. ..++.+|.+.+ . +++.
T Consensus 411 kvdR~tK~~~~g~f~n~eIfrireKdIpve~ve--lke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 411 KVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE--LKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEeeccccccceEeeEEEEEeeccCCCceeee--cchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 1 111235556655433 233333 4558999999999998775432 35688898873 2 2333
Q ss_pred eeecCCCceEEEEEeeCCCCeEEEEc---CCCeEEEEEcCC
Q 014104 312 ETRISPNVVYSLQHLQNDTSTLVVGG---IDGVLRVLDQNT 349 (430)
Q Consensus 312 ~~~~~~~~v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~~ 349 (430)
.+.. ...+.+. |+|.|++++.+. ..|.+.++|+..
T Consensus 489 ~~dk--~~~N~vf-wsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 489 ELDK--KFANTVF-WSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred hhcc--cccceEE-EcCCCcEEEEEEecccccceEEEecch
Confidence 4433 3445665 999999988765 568899999874
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.7e-08 Score=91.70 Aligned_cols=179 Identities=13% Similarity=0.163 Sum_probs=134.1
Q ss_pred CCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEe
Q 014104 163 ESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241 (430)
Q Consensus 163 ~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 241 (430)
+..++ |+....+..+|+.+.+......-+.. .+.-+..++..+.+|...|+|.+-|..+.+.++++..|++.|.++..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv 225 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV 225 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCC-ceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec
Confidence 34444 77788888899988775433322221 14566777788999999999999999999999999999999999888
Q ss_pred cCCCEEEEEeC---------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCC-Cce-
Q 014104 242 SEDQLIISGSS---------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRT-MKS- 309 (430)
Q Consensus 242 ~~~~~l~~~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~-~~~- 309 (430)
.++.+++++. |.-|+|||++..+.+..+.- .....-+.|+|.- ..+++.+..|...+-|..+ ..+
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~--~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~ 302 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF--PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP 302 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCccc--ccCchhhhhcccccceEEEEecccceeeccccccCCCc
Confidence 4567777764 56789999998887766653 2234567788753 4678888899999998433 222
Q ss_pred --eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 310 --LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 310 --~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+..+......+..+. ++++++.++.|..+|.|.+|-
T Consensus 303 ~~~~~v~p~~s~i~~fD-iSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 303 AGVKMVNPNGSGISAFD-ISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceeEEccCCCcceeEE-ecCCCceEEEecccCcEeeec
Confidence 222233335588898 999999999999999999997
|
|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.9e-09 Score=66.79 Aligned_cols=47 Identities=28% Similarity=0.441 Sum_probs=40.4
Q ss_pred CccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHH
Q 014104 23 TIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC 69 (430)
Q Consensus 23 ~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~ 69 (430)
.+..||+|++.+||++|++.++.++++|||.|+.++.+..+|...++
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r 48 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR 48 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence 46789999999999999999999999999999999999999988764
|
This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.4e-06 Score=79.83 Aligned_cols=229 Identities=16% Similarity=0.172 Sum_probs=145.9
Q ss_pred ecC-CeEEEEeCCCeEEEEecCCCeeEEeeecCCce------e-EEEEecCCCEEEEE---------eCCeEEEEEcCCC
Q 014104 120 MKR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA------S-LVDFDFDESKIVGL---------IGTRICIWRRNGL 182 (430)
Q Consensus 120 ~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~-~~~~~~~~~~l~~~---------~~~~i~vwd~~~~ 182 (430)
+.+ +.++.++.++.|..+|.++|+.+..+...... . ...+. ++..++++ .++.+.-+|.+++
T Consensus 107 ~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 107 YWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred EccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCC
Confidence 335 68888899999999999999999887754321 1 11111 23333443 2578888999988
Q ss_pred cccccCCCCce----------------------eeeeEEEEcCCceEEEecCC------------------eEEEEECCC
Q 014104 183 RSVFPSREGTF----------------------MKGLCMRYFDPEAVVGCEDG------------------TARVFDMYS 222 (430)
Q Consensus 183 ~~~~~~~~~~~----------------------~~~~~~~~~~~~l~~~~~dg------------------~i~vwd~~~ 222 (430)
+..+....... -....+...+..++.++.++ .|.-+|..+
T Consensus 186 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t 265 (488)
T cd00216 186 KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT 265 (488)
T ss_pred ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC
Confidence 86654322100 00111122234477777665 799999999
Q ss_pred CeeeEEeecCCCCe-----------EEEEecCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC
Q 014104 223 RKCSQIIRMHCAPV-----------TSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR 288 (430)
Q Consensus 223 ~~~~~~~~~~~~~i-----------~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 288 (430)
|+....++.-.... ..+.-..+ ..++.++.+|.+...|.++|+.+...... ...+..+| .
T Consensus 266 G~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~ 339 (488)
T cd00216 266 GKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--G 339 (488)
T ss_pred CCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--c
Confidence 99988765211111 11110112 36788889999999999999998877531 11233444 3
Q ss_pred EEEEE------------------eCCCeEEEEeCCCCceeeeeecCC--------Cce--EEEEEeeCCCCeEEEEcCCC
Q 014104 289 LVFAG------------------TTAGYASCWDLRTMKSLWETRISP--------NVV--YSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 289 ~l~~~------------------~~dg~i~i~d~~~~~~~~~~~~~~--------~~v--~~l~~~s~~~~~l~s~~~dg 340 (430)
.++.+ ..+|.+.-.|+.+++.+.+..... ... ..+. ..+..|++++.||
T Consensus 340 ~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~---~~g~~v~~g~~dG 416 (488)
T cd00216 340 LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA---TAGNLVFAGAADG 416 (488)
T ss_pred eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE---ecCCeEEEECCCC
Confidence 33332 246789999999999888765431 111 1222 2467889999999
Q ss_pred eEEEEEcCCCceEEEEEe
Q 014104 341 VLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~ 358 (430)
.|+.+|..+|+.+.+.+.
T Consensus 417 ~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 417 YFRAFDATTGKELWKFRT 434 (488)
T ss_pred eEEEEECCCCceeeEEEC
Confidence 999999999999998875
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-08 Score=92.60 Aligned_cols=202 Identities=16% Similarity=0.131 Sum_probs=136.3
Q ss_pred EEEeccccceeEEEecC---CeEEEEeCCCeEEEEecCCCe-eEEeeec-CCceeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 106 DQWKAHSVGVDQCRMKR---GLILTGVGDKVMRLWSLEGYK-CVEEYSL-PNAASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~~---~~l~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
..+.||..+|+.+-|.. ..+++++.|-.+..||+.+.. .+..+.. +.+.
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~a-------------------------- 161 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAA-------------------------- 161 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccC--------------------------
Confidence 46789999999999943 399999999999999987632 2222211 1111
Q ss_pred CCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecC--CCEEEEEeCCCeEE
Q 014104 181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSE--DQLIISGSSLGSIA 257 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~ 257 (430)
..+.+.+-.+.+.+.+....|.+||.+.| .++..+++|...|+.++|+. ...+.+.+.|++|+
T Consensus 162 --------------sqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 162 --------------SQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred --------------ceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 12445555666666777778999999876 57788999999999999984 26788999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE--eCCCeEEEEeCC---------C-CceeeeeecCCCceEEEEE
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG--TTAGYASCWDLR---------T-MKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~i~d~~---------~-~~~~~~~~~~~~~v~~l~~ 325 (430)
.||................+|..-++.|-|.-.++- -.+..+-+++-+ + .+++.++.+|.+.|....
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFl- 306 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFL- 306 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHh-
Confidence 999875433222221134466666777755422211 111234444332 2 467889999998876655
Q ss_pred eeC--------C--CCeEEEEcCCCeEEEEEcC
Q 014104 326 LQN--------D--TSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 326 ~s~--------~--~~~l~s~~~dg~i~vwd~~ 348 (430)
|-. + .-.|+|=+.|..+++|-+.
T Consensus 307 WR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 307 WRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred hhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 311 1 1279999999999999876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-05 Score=74.52 Aligned_cols=216 Identities=8% Similarity=-0.061 Sum_probs=127.1
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCE-EE-EEe---CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK-IV-GLI---GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (430)
.|.+=|.+... .+.+..........|+|||+. ++ .+. ...|.++|+.+++...............+++++..++
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la 248 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGGLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLL 248 (419)
T ss_pred eEEEECCCCCc-eeEEccCCCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEE
Confidence 45554554433 222332334556899999985 54 333 3569999998887433222222233456777777744
Q ss_pred -EEec--CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCC--eEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 208 -VGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLG--SIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 208 -~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
+.+. +..|.++|+.+++.. .+..+.+......|+|+ +.++..+ ..+ .|.+.|+.+++..+.... ... .
T Consensus 249 ~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~~--~ 323 (419)
T PRK04043 249 LTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GKN--N 323 (419)
T ss_pred EEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CCc--C
Confidence 3333 357888898777643 34434433445679986 5555444 333 688889988776443332 111 2
Q ss_pred EEEecCCCEEEEEeCC---------CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcC
Q 014104 281 LCYNPCSRLVFAGTTA---------GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQN 348 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~ 348 (430)
..|+|+|+.++..... ..|.+.|+.+++.. .+... ....... |+|||+.|+..+.+ ..+.+.++.
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~-~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPR-FSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeE-ECCCCCEEEEEEccCCcEEEEEEecC
Confidence 4899999988865543 36888898877543 33322 2223455 99999987665532 246666765
Q ss_pred CCceEEEEEe
Q 014104 349 TGEVLSRCVM 358 (430)
Q Consensus 349 ~~~~~~~~~~ 358 (430)
|.....+..
T Consensus 401 -g~~~~~l~~ 409 (419)
T PRK04043 401 -YNKSFLFPL 409 (419)
T ss_pred -CCeeEEeec
Confidence 444444543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.5e-09 Score=99.56 Aligned_cols=219 Identities=11% Similarity=0.123 Sum_probs=145.8
Q ss_pred cCCEeEEEEeccccceeEEEecCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE--EEeC-Ce
Q 014104 100 EGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV--GLIG-TR 173 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~--~~~~-~~ 173 (430)
......++|+.|+..-+|++|+.+ .|+.|+..|.|+++++.+|.....+.+|+. +..+.-+.+|..++ ++.. --
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pl 1168 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPL 1168 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCch
Confidence 333456788999999999999754 999999999999999999999988888744 45577778898877 2222 24
Q ss_pred EEEEEcCCCc-ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee----cCCCCeEEEEecCCCEEE
Q 014104 174 ICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR----MHCAPVTSLSLSEDQLII 248 (430)
Q Consensus 174 i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~ 248 (430)
..+|++...- ........+ .+-++.....-+.|+......+||++|+..+.++- +....-++..|+|.+.++
T Consensus 1169 saLW~~~s~~~~~Hsf~ed~---~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1169 SALWDASSTGGPRHSFDEDK---AVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred HHHhccccccCccccccccc---eeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 6789986522 111111111 12222222224455555678999999998776632 122233678899875444
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
. .|| .+||.+..+.++.|.. .. .-..=.|+|+|..++..+. |||+++.+.++....-. -..+. |+.
T Consensus 1246 l--ndG--vLWDvR~~~aIh~FD~-ft-~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~Vt-FNs 1311 (1516)
T KOG1832|consen 1246 L--NDG--VLWDVRIPEAIHRFDQ-FT-DYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVT-FNS 1311 (1516)
T ss_pred e--eCc--eeeeeccHHHHhhhhh-he-ecccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEE-ecc
Confidence 3 344 5899999888888764 33 2223369999999988754 99999988876654322 23444 666
Q ss_pred CCCeEEE
Q 014104 329 DTSTLVV 335 (430)
Q Consensus 329 ~~~~l~s 335 (430)
.|..++.
T Consensus 1312 tG~VmYa 1318 (1516)
T KOG1832|consen 1312 TGDVMYA 1318 (1516)
T ss_pred Cccchhh
Confidence 6765543
|
|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-08 Score=60.49 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=38.4
Q ss_pred CcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHH
Q 014104 27 LNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQL 66 (430)
Q Consensus 27 Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~ 66 (430)
||+|++.+||.+|++.|+.++++|||.|+.++.++.+|+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999999964
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.2e-08 Score=56.96 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=36.6
Q ss_pred CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 307 MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 307 ~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
++++.++.+|.+.|++++ ++|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~-~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIA-WSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEE-EETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEE-EecccccceeeCCCCEEEEEC
Confidence 367889999999999999 999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.1e-07 Score=75.03 Aligned_cols=236 Identities=11% Similarity=0.199 Sum_probs=145.3
Q ss_pred cccceeEEEec-CC-eEEEEeCCCeEEEEecCCCe-----eEEeeecC-------------CceeEEEEecCC---CEEE
Q 014104 111 HSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYK-----CVEEYSLP-------------NAASLVDFDFDE---SKIV 167 (430)
Q Consensus 111 h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~-------------~~~~~~~~~~~~---~~l~ 167 (430)
..+.|+++.|. -| ||++|...|.|.++.-+... ....|+.| +.+..+.|-.++ ..|+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35678999994 44 99999999999999654321 12223332 223345554433 2456
Q ss_pred EEeCCeEEEEEcCCCcc-------------------------c-ccCCCC----------------ceeeeeEEEEcCCc
Q 014104 168 GLIGTRICIWRRNGLRS-------------------------V-FPSREG----------------TFMKGLCMRYFDPE 205 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~-------------------------~-~~~~~~----------------~~~~~~~~~~~~~~ 205 (430)
.+.|.+|++|.+-.... + ...... |.-.+.+++..+..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 99999999998753210 0 000000 11111222222222
Q ss_pred -eEEEecCCeEEEEECCCCe---eeEEeecCC-----CCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCcee----EE-
Q 014104 206 -AVVGCEDGTARVFDMYSRK---CSQIIRMHC-----APVTSLSLSED--QLIISGSSLGSIAISGLSSDQRV----AT- 269 (430)
Q Consensus 206 -l~~~~~dg~i~vwd~~~~~---~~~~~~~~~-----~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~----~~- 269 (430)
.+..+.|=.|.+|+++-.. -+..++.|. .-|++..|+|. +.+.-.+..|.|++-|++..... ..
T Consensus 185 et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klf 264 (460)
T COG5170 185 ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLF 264 (460)
T ss_pred heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhh
Confidence 4445566788999875322 122334443 46788999975 67777788999999999843221 00
Q ss_pred ---Eec-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecCC------------Cce---EEE
Q 014104 270 ---LRS-------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRISP------------NVV---YSL 323 (430)
Q Consensus 270 ---~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~------------~~v---~~l 323 (430)
+.+ .-...|..+.|+++|+++++-+. -+|++||++. ..++.++..|. +.| ..+
T Consensus 265 e~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 265 ELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 110 01236889999999999988765 4699999986 45666665442 222 344
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
. ||-|.+.+++|+..+..-++-+.
T Consensus 344 s-fSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 344 S-FSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred E-ecCCcccccccccccceeeeccc
Confidence 4 78888999999988888888644
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-05 Score=72.84 Aligned_cols=227 Identities=12% Similarity=0.102 Sum_probs=142.6
Q ss_pred EEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEe------------CCeEEEEEcCCC
Q 014104 117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLI------------GTRICIWRRNGL 182 (430)
Q Consensus 117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------~~~i~vwd~~~~ 182 (430)
-+.| |.| ||+|--.- -|.+|--++...++.|.+ ..+..+.|||+.++|++-+ ...+.|||+.+|
T Consensus 215 yv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEecCCceEEEEEecc-ceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 3455 456 77776654 478897777666666665 4788899999999998321 257999999998
Q ss_pred ccc--ccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-----
Q 014104 183 RSV--FPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS----- 252 (430)
Q Consensus 183 ~~~--~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~----- 252 (430)
... +.. .....-..+.|++++.+++.-.. .+|.||+..+-.++..-.-.-..|....|+|. ++||--+.
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~ 371 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNI 371 (698)
T ss_pred chhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCC
Confidence 743 333 22223456778888888776655 47999997654333222223456888899987 55554432
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe----------CCCeEEEEeCCCCceeeeeecCCCceEE
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT----------TAGYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
-..+-+-.+-+++.+++-+- +.-.=..+.|..+|.+|+.-- .-..+.|+.++....--..-.-...|..
T Consensus 372 parvtL~evPs~~~iRt~nl-fnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~ 450 (698)
T KOG2314|consen 372 PARVTLMEVPSKREIRTKNL-FNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIA 450 (698)
T ss_pred cceEEEEecCccceeeeccc-eeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheee
Confidence 13566667777777666554 332334466777888876431 1123566666643322222223467888
Q ss_pred EEEeeCCCCeEEEEcC---CCeEEEEEcC
Q 014104 323 LQHLQNDTSTLVVGGI---DGVLRVLDQN 348 (430)
Q Consensus 323 l~~~s~~~~~l~s~~~---dg~i~vwd~~ 348 (430)
.+ |.|.|..+++-+. ..++.+|.++
T Consensus 451 Fa-WEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 451 FA-WEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred ee-eccCCCeEEEEEccccccceeEEEee
Confidence 88 9999987766553 3567788776
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.6e-05 Score=64.02 Aligned_cols=175 Identities=13% Similarity=0.144 Sum_probs=111.8
Q ss_pred CCeEEEEEcCCCcc----cccCCCCceeeeeEEEEcCCceEEEecC---CeEEEEECCC--Ceee--EEeecCCCCeEEE
Q 014104 171 GTRICIWRRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGCED---GTARVFDMYS--RKCS--QIIRMHCAPVTSL 239 (430)
Q Consensus 171 ~~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~--~~~~--~~~~~~~~~i~~~ 239 (430)
+..|.+|++++... +...........+.+.+....|.++..+ |.|..|.+.. |+.. ........+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 57799999885431 1111122223346666666667776554 6677766653 5432 2222223344788
Q ss_pred EecCC-CEEEEEe-CCCeEEEEeCCC-Cce---eEEEecCCCCC----------eEEEEEecCCCEEEEEe--CCCeEEE
Q 014104 240 SLSED-QLIISGS-SLGSIAISGLSS-DQR---VATLRSTDCTG----------IKTLCYNPCSRLVFAGT--TAGYASC 301 (430)
Q Consensus 240 ~~~~~-~~l~~~~-~dg~i~vwd~~~-~~~---~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~--~dg~i~i 301 (430)
+++++ ++++++. ..|.|.++-++. |.. +..+. |.+. +....++|++++|++.. .| .|.+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~--h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~ 171 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVK--HTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFL 171 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeee--cCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEE
Confidence 88865 6777775 568999999865 332 22222 3333 88899999999998764 34 4999
Q ss_pred EeCCCCceeee----eecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCC
Q 014104 302 WDLRTMKSLWE----TRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTG 350 (430)
Q Consensus 302 ~d~~~~~~~~~----~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~ 350 (430)
|++..+++... ++ ....-.-|. |+|++++..... -+++|.+|.....
T Consensus 172 y~~~dg~L~~~~~~~v~-~G~GPRHi~-FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 172 YDLDDGKLTPADPAEVK-PGAGPRHIV-FHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEcccCccccccccccC-CCCCcceEE-EcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 99997754322 22 224567788 999999886655 6899999998863
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-07 Score=55.92 Aligned_cols=39 Identities=23% Similarity=0.585 Sum_probs=35.9
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 303 (430)
++++.++.+ |...|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~-h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRG-HSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEES-SSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcC-CCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357788887 889999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0002 Score=62.01 Aligned_cols=214 Identities=14% Similarity=0.033 Sum_probs=133.0
Q ss_pred EEEec--CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc--cccCC--
Q 014104 117 QCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS--VFPSR-- 189 (430)
Q Consensus 117 ~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~--~~~~~-- 189 (430)
++.|. ++ ++++--..+.|..|+..+++.. .+..+. ...+.+...+..++.+..+.+.++|..+++. +....
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-EEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-EEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCC
Confidence 45563 45 5555556889999999886553 344443 5667777333555544556667779888753 22221
Q ss_pred --CCceeeeeEEEEcCCceEEEecC--------CeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-EEEeCCCeEE
Q 014104 190 --EGTFMKGLCMRYFDPEAVVGCED--------GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIA 257 (430)
Q Consensus 190 --~~~~~~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~ 257 (430)
........++.+.+...++.... |.|..++.. ++...... .-...+.++|+|+ +.| ++-+..+.|.
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~ 159 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIW 159 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeE
Confidence 22333344555555534443322 568888876 55443333 3456789999986 544 4667888999
Q ss_pred EEeCCCCce----eEEEecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEe-eCCC
Q 014104 258 ISGLSSDQR----VATLRST--DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHL-QNDT 330 (430)
Q Consensus 258 vwd~~~~~~----~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~-s~~~ 330 (430)
.+++..... ...+... ..+....++++++|++.++....+.|.++|.+ ++.+..+......+++++ | .++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~-fgg~~~ 237 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCA-FGGPDG 237 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEE-EESTTS
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE-EECCCC
Confidence 999863221 1222111 11247889999999988888888999999988 888888776656888998 6 5666
Q ss_pred CeEEEE
Q 014104 331 STLVVG 336 (430)
Q Consensus 331 ~~l~s~ 336 (430)
+.|+..
T Consensus 238 ~~L~vT 243 (246)
T PF08450_consen 238 KTLYVT 243 (246)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 655543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-05 Score=65.10 Aligned_cols=196 Identities=14% Similarity=0.160 Sum_probs=119.5
Q ss_pred cCCeEEEEeCCCeEEEEecCCC--eeEEeeecC----CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC----C
Q 014104 121 KRGLILTGVGDKVMRLWSLEGY--KCVEEYSLP----NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS----R 189 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~----~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~----~ 189 (430)
++|.++..-.|..|.|=..... ..+.+...+ ..-.-++|+||+..|+ +...|+|+++|+.+.+.-... .
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~ 86 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF 86 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc
Confidence 4666666667777777654431 222222222 2335599999999999 888999999999875421110 0
Q ss_pred CC---ceeeeeEEEEcC------CceEEEecCCeEEEEECCCC-----eeeEEee---cCCCCeEEEEecCC-CEEEEEe
Q 014104 190 EG---TFMKGLCMRYFD------PEAVVGCEDGTARVFDMYSR-----KCSQIIR---MHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 190 ~~---~~~~~~~~~~~~------~~l~~~~~dg~i~vwd~~~~-----~~~~~~~---~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
.+ ..+..+.+.... ..|++-..+|.++-|-+..+ +..+.+. .+...|.++.++|+ ++|+.|+
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 11 111122222211 12777778888877765322 2333333 23568999999987 6666664
Q ss_pred C-CC----------eEEEEeCCCCceeEE----------------------------EecCCCCCeEEEEEecCCCEEEE
Q 014104 252 S-LG----------SIAISGLSSDQRVAT----------------------------LRSTDCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 252 ~-dg----------~i~vwd~~~~~~~~~----------------------------~~~~~~~~v~~~~~~~~~~~l~~ 292 (430)
. .. -+..|.+-++.+-.+ ........|..|..+|||..||+
T Consensus 167 ~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ 246 (282)
T PF15492_consen 167 CEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLAC 246 (282)
T ss_pred cCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEE
Confidence 2 11 355665433221100 01113457999999999999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecC
Q 014104 293 GTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 293 ~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
...+|.|.+|++.+.+....+..+
T Consensus 247 ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 247 IHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEcCCeEEEEecCcchhhcccchh
Confidence 999999999999987776665544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-06 Score=81.18 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=111.5
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCC
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 276 (430)
.|....+..++-|+.+|.|++++.. +.. .+...|... -..+.++++|+.||+|.|..+-+.+...++. ...
T Consensus 43 s~~av~~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~r 113 (846)
T KOG2066|consen 43 SCCAVHDKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--FKR 113 (846)
T ss_pred HHHHhhcceeeeccccceEEEEecC-Ccc-ccccccccc-----ccCCceEEEecCCCcEEEeeccCCccceeEe--cCC
Confidence 3444455568999999999999974 444 344345443 1256899999999999999999988887776 566
Q ss_pred CeEEEEEecC-----CCEEEEEeCCCeEEEEeCCCCcee--eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 277 GIKTLCYNPC-----SRLVFAGTTAGYASCWDLRTMKSL--WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 277 ~v~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
++.+++++|+ .+.+++|+.-| +.++.-+-.... ..+....++|.++. | .|.++|=++.+| |+|||+.+
T Consensus 114 piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~-W--~g~lIAWand~G-v~vyd~~~ 188 (846)
T KOG2066|consen 114 PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIK-W--RGNLIAWANDDG-VKVYDTPT 188 (846)
T ss_pred cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEE-e--cCcEEEEecCCC-cEEEeccc
Confidence 9999999998 46788999888 777764321111 13445568999998 5 588888888777 99999999
Q ss_pred CceEEEEEecc
Q 014104 350 GEVLSRCVMDI 360 (430)
Q Consensus 350 ~~~~~~~~~~~ 360 (430)
++.+..++...
T Consensus 189 ~~~l~~i~~p~ 199 (846)
T KOG2066|consen 189 RQRLTNIPPPS 199 (846)
T ss_pred cceeeccCCCC
Confidence 88888776543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00023 Score=72.65 Aligned_cols=194 Identities=10% Similarity=-0.005 Sum_probs=126.4
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEE----EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIW----RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS 226 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 226 (430)
..+..+.+-++...++ +..+|.|.+. +......-..+.-.......+|+++...++..+.++++.+.+- +...+
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i 154 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPI 154 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEE
Confidence 3455566777777666 8889999998 5555543333333444567888888888888888888877643 11111
Q ss_pred EE------------------------eec------------------------CCCCeEEEEecC-CCEEEEEeC---C-
Q 014104 227 QI------------------------IRM------------------------HCAPVTSLSLSE-DQLIISGSS---L- 253 (430)
Q Consensus 227 ~~------------------------~~~------------------------~~~~i~~~~~~~-~~~l~~~~~---d- 253 (430)
.. |+| +...-..++|-. +.++++.+. .
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 11 100 111234566763 478887764 2
Q ss_pred --CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeeeee----cCCCceEEEE
Q 014104 254 --GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLWETR----ISPNVVYSLQ 324 (430)
Q Consensus 254 --g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~----~~~~~v~~l~ 324 (430)
..++||+- .|....+-+. ..+--.+++|.|.|+++|+.-. ...|.+|. ++|-...++. .....|..+.
T Consensus 235 ~~R~iRVy~R-eG~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 235 SRRVIRVYSR-EGELQSTSEP-VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred ceeEEEEECC-CceEEecccc-CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEE
Confidence 57999995 4776555542 4445567899999999987654 33466665 3443333332 3446789998
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
|++|+..|+..-.|. |.+|-..+..
T Consensus 312 -Wn~ds~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 312 -WNSDSEILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred -ECCCCCEEEEEecCC-ceEEEeeCCE
Confidence 999999999877665 9999988765
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-06 Score=76.63 Aligned_cols=258 Identities=15% Similarity=0.155 Sum_probs=157.3
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCc--cc---ccCCCCceeeeeEEEEcCCceEEEec-CCeEEEEECCCCeeeEEeec--C
Q 014104 162 DESKIV-GLIGTRICIWRRNGLR--SV---FPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRM--H 232 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~--~~---~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~--~ 232 (430)
..+++. ++.||.++.|....-. .. +..+.+ ....++.+..+-.+.+.+. |..++++|+++-..+..++. -
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~-~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l 97 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLG-VILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL 97 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHH-HHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC
Confidence 445555 8999999999876522 11 111111 1223444555555777677 99999999987665543332 1
Q ss_pred CCCeEEEEecCC---CEEE-EEeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-
Q 014104 233 CAPVTSLSLSED---QLII-SGSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT- 306 (430)
Q Consensus 233 ~~~i~~~~~~~~---~~l~-~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~- 306 (430)
.+.+. ...+++ ..++ +.-.++.+.++|-.... ...-+.+-|..+|..+.++|.+..+++....|.|.-|....
T Consensus 98 Pg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~ 176 (558)
T KOG0882|consen 98 PGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGP 176 (558)
T ss_pred CCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCc
Confidence 22222 222344 2333 34467899999976543 44455555888999999999999999999999999998872
Q ss_pred -----Cceeee---------eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 307 -----MKSLWE---------TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 307 -----~~~~~~---------~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
.+.... +........++. |+|+|..+.+-+.|..|++++..+|+.++.+...........-++-+
T Consensus 177 ~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~E-fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~ 255 (558)
T KOG0882|consen 177 FQFPRTNLNFELKHETDLYGFPKAKTEPTSFE-FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYG 255 (558)
T ss_pred ccCccccccccccccchhhcccccccCccceE-EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccc
Confidence 111111 122235567887 99999999999999999999999999988887543321111111111
Q ss_pred eEEEeecccccCCcccccCCCCCCC-CeeEEEEc--CeEEEEeeCCCeEEEEEecCCC
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRP-PITCLAVG--MKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
...+.-++.+..+..+. + |.. .-+.+.|| +++|+-|+-=| |+|.++.+++
T Consensus 256 l~~VelgRRmaverele---k-~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 256 LMHVELGRRMAVERELE---K-HGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred cceeehhhhhhHHhhHh---h-hcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 11111112222111111 1 222 23445564 78888777654 7777777664
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-05 Score=74.07 Aligned_cols=106 Identities=6% Similarity=0.039 Sum_probs=75.4
Q ss_pred CCeEEEEeCCC-----CceeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCce------------eeeee
Q 014104 253 LGSIAISGLSS-----DQRVATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKS------------LWETR 314 (430)
Q Consensus 253 dg~i~vwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~------------~~~~~ 314 (430)
++.|.+.|.++ .+.+..+. -......+.++|||+++++++ .+.+|.++|+.+.+. +.+..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 35688889887 35555565 455788999999999888655 488999999987553 33333
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC----------CceEEEEEeccCc
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT----------GEVLSRCVMDIGS 362 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~ 362 (430)
...++. ..+ |+++|....|-.-|..|..||+.. ...+..+..|-+.
T Consensus 373 vGlGPL-HTa-FDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~p 428 (635)
T PRK02888 373 LGLGPL-HTA-FDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQP 428 (635)
T ss_pred cCCCcc-eEE-ECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcc
Confidence 333333 344 888998888888999999999985 3455555555443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00022 Score=61.70 Aligned_cols=200 Identities=13% Similarity=0.031 Sum_probs=124.1
Q ss_pred EEEEecC-CCEEE-EEeCCe-EEEEEcCCCcccc--c-CCCCceeeeeEEEEcCCceEEEe-----cCCeEEEEECC-CC
Q 014104 156 LVDFDFD-ESKIV-GLIGTR-ICIWRRNGLRSVF--P-SREGTFMKGLCMRYFDPEAVVGC-----EDGTARVFDMY-SR 223 (430)
Q Consensus 156 ~~~~~~~-~~~l~-~~~~~~-i~vwd~~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~~~-----~dg~i~vwd~~-~~ 223 (430)
.++.+|. +..++ +..-|. ..+||..+++... . ....+..---++++++..|++.- ..|.|-|||.. +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 3555663 33333 444443 5667777766332 1 12222222345555666666543 35889999998 56
Q ss_pred eeeEEeecCCCCeEEEEecCC-CEEEEEe------------------CCCeEEEEeCCCCceeEEEec---CCCCCeEEE
Q 014104 224 KCSQIIRMHCAPVTSLSLSED-QLIISGS------------------SLGSIAISGLSSDQRVATLRS---TDCTGIKTL 281 (430)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~~~~-~~l~~~~------------------~dg~i~vwd~~~~~~~~~~~~---~~~~~v~~~ 281 (430)
+.+.++..|.-.-..+.+.|+ ..|+.+. .+-.+...|..+|+.+.+..- .|...+..+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 777788766555566777766 3555542 234566778888888777432 255589999
Q ss_pred EEecCCCEEEEEeCCCe-------EEEEeCCCCceeeeee-------cCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEE
Q 014104 282 CYNPCSRLVFAGTTAGY-------ASCWDLRTMKSLWETR-------ISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLD 346 (430)
Q Consensus 282 ~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~-------~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd 346 (430)
+++++|..++..-..|. |.+++.. +.+..+. .-.+.+-+++ +++++.++++.+ ..|.+.+||
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa-~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIA-ADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEE-EeCCCCEEEEECCCCCEEEEEE
Confidence 99999987666544332 3344332 2222222 2236788888 999998776555 778999999
Q ss_pred cCCCceEEEEEe
Q 014104 347 QNTGEVLSRCVM 358 (430)
Q Consensus 347 ~~~~~~~~~~~~ 358 (430)
..+++.+.....
T Consensus 246 ~~tg~~~~~~~l 257 (305)
T PF07433_consen 246 AATGRLLGSVPL 257 (305)
T ss_pred CCCCCEeecccc
Confidence 999998887654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.3e-05 Score=75.66 Aligned_cols=217 Identities=12% Similarity=0.079 Sum_probs=146.6
Q ss_pred ceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC
Q 014104 114 GVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 114 ~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~ 191 (430)
.-.++.++ .|++|-|+. ..|.+-|..+.+.+..++.| ..+..+.|.|.+.... .
T Consensus 17 N~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~-----------------l------ 72 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRD-----------------L------ 72 (1062)
T ss_pred cccccccCccceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchh-----------------c------
Confidence 35567775 457777765 47888899999999999887 4566688877543210 0
Q ss_pred ceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC---C--CEEEEEeCCCeEEEEeCCCCce
Q 014104 192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE---D--QLIISGSSLGSIAISGLSSDQR 266 (430)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~---~--~~l~~~~~dg~i~vwd~~~~~~ 266 (430)
..-......++++...|.|.+||...+..+..+..|.+++..++|-+ + ..+++-....++.+|+..+|+.
T Consensus 73 -----lS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 73 -----LSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred -----cCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 00001122378888899999999999988889998999999999974 2 4677777788999999999999
Q ss_pred eEEEecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEeCCC-------CceeeeeecCCC----------------c---
Q 014104 267 VATLRSTDCTGIKTLCYNPC-SRLVFAGTTAGYASCWDLRT-------MKSLWETRISPN----------------V--- 319 (430)
Q Consensus 267 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~----------------~--- 319 (430)
..+... ......|+.++|- .+.+..-+..|.+.+-+.-. ++..+.-..|.+ .
T Consensus 148 ~Wk~~y-s~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDY-SHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eecccc-CCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 988876 3346777888884 45666666677776665431 222221111111 0
Q ss_pred ------eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 320 ------VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 320 ------v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
...++ |+|.-+.++-......+.++|++-..++.......+
T Consensus 227 a~fity~a~fa-f~p~~rn~lfi~~prellv~dle~~~~l~vvpier~ 273 (1062)
T KOG1912|consen 227 AYFITYCAQFA-FSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG 273 (1062)
T ss_pred hhHHHHHHhhh-cChhhhceEEEEeccceEEEcchhhceeEEEEeccC
Confidence 11223 567666555556677899999987777777765444
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00011 Score=66.25 Aligned_cols=233 Identities=9% Similarity=0.045 Sum_probs=148.0
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEE----------------eCC
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL----------------IGT 172 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~~~ 172 (430)
-.-++..+.+ |.| +|++.. -..|.+|+...+..+..+.+ ..+..+.|+|++.+|..- .++
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~-~~~V~~~~g~~~~~l~~~~~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEH-AAGVECWGGPSKAKLVRFRH-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cCcchhheeecCcchheehhh-ccceEEccccchhheeeeec-CCceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 3446777777 456 555544 45699999887775555554 477889999999998732 124
Q ss_pred eEEEEEcCCCcccccCC--CCc--eeeeeEEEEcCCceEEEecCCeEEEEECCCCeee-EEeecC-CCCeEEEEecCC--
Q 014104 173 RICIWRRNGLRSVFPSR--EGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS-QIIRMH-CAPVTSLSLSED-- 244 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~-~~~i~~~~~~~~-- 244 (430)
.+.+||..++..++... ... .-..+-++.++.+++-- ....++++++ ++... ..+..- ...|....++|.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n 186 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGN 186 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhccccceeeEEecCCCC
Confidence 58999999988654322 111 11245666666663332 2347899997 44321 111111 245778888874
Q ss_pred -CEEEE-----EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe-----------CCCeEEEEeCCCC
Q 014104 245 -QLIIS-----GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT-----------TAGYASCWDLRTM 307 (430)
Q Consensus 245 -~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~dg~i~i~d~~~~ 307 (430)
..|+. .+.++++++|.+..+..+.+..- ....-..+.|++.|++|.+-. ....+++++++..
T Consensus 187 ~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 187 HDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CceEEEEccccCCCCcEEEEEEccCCCeeeeeee-EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 23333 35678999999987776654432 223345688899998766421 1245888888743
Q ss_pred ceeeeeecCCCceEEEEEeeCCCCeEEEEc--CCCeEEEEEcCCC
Q 014104 308 KSLWETRISPNVVYSLQHLQNDTSTLVVGG--IDGVLRVLDQNTG 350 (430)
Q Consensus 308 ~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~--~dg~i~vwd~~~~ 350 (430)
... ....-.++|.... |.|.++.+++.+ .+-.+.++|++..
T Consensus 266 ~i~-V~~~~~~pVhdf~-W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 266 SIP-VEKDLKDPVHDFT-WEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccc-eeccccccceeee-ecccCCceeEEecccccceeecccccc
Confidence 322 2224468999998 999988765544 7788999998843
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.4e-05 Score=69.64 Aligned_cols=187 Identities=12% Similarity=-0.056 Sum_probs=112.4
Q ss_pred ceeEEEe-cCC-e-EEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-Ee--CCeEEEEEcCCCc
Q 014104 114 GVDQCRM-KRG-L-ILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LI--GTRICIWRRNGLR 183 (430)
Q Consensus 114 ~v~~~~~-~~~-~-l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~--~~~i~vwd~~~~~ 183 (430)
.+....| |+| . ++..+.+ ..|.++|+.+++........+......|+|||+.++ . .. +..|.++|+.++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 3445566 555 3 5544433 568888999887665555445555678999999887 3 22 3568888988776
Q ss_pred ccccCCCCceeeeeEEEEcCCceEEEec-CC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC------
Q 014104 184 SVFPSREGTFMKGLCMRYFDPEAVVGCE-DG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL------ 253 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d------ 253 (430)
...............+++++..++..+. .+ .|.+.|+.+++..+.... ... ...|+|+ +.++..+..
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcCCCcccC
Confidence 3222211112223467778877555543 23 688889987766443321 111 2488876 655554432
Q ss_pred ---CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-C--eEEEEeCCC
Q 014104 254 ---GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-G--YASCWDLRT 306 (430)
Q Consensus 254 ---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~ 306 (430)
..|.+.|+.++.. +.+.. . .......|+|||+.++....+ + .+.+.++..
T Consensus 346 ~~~~~I~v~d~~~g~~-~~LT~-~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 346 KNTFNLYLISTNSDYI-RRLTA-N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCcEEEEEECCCCCe-EECCC-C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3688889887765 34442 1 233357899999987755432 2 366666653
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.6e-06 Score=68.99 Aligned_cols=207 Identities=15% Similarity=0.206 Sum_probs=129.3
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc---c----cccCCCCce-----------eeeeEEEEcCCc--eEEEe
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR---S----VFPSREGTF-----------MKGLCMRYFDPE--AVVGC 210 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~---~----~~~~~~~~~-----------~~~~~~~~~~~~--l~~~~ 210 (430)
+.+..+.|...|.+++ |...|.|.++.-+... . -++.++... ...+.+...... ++..+
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 4456677888888888 6667889888765433 1 123332221 111222222222 77788
Q ss_pred cCCeEEEEECCCCee-------------------e-----------------------EEe-ecCCCCeEEEEecCCCEE
Q 014104 211 EDGTARVFDMYSRKC-------------------S-----------------------QII-RMHCAPVTSLSLSEDQLI 247 (430)
Q Consensus 211 ~dg~i~vwd~~~~~~-------------------~-----------------------~~~-~~~~~~i~~~~~~~~~~l 247 (430)
.|.+|++|.+..... + +.+ ..|..-|.++.++.+...
T Consensus 107 NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et 186 (460)
T COG5170 107 NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKET 186 (460)
T ss_pred CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchhe
Confidence 899999998753200 0 001 246667788889877444
Q ss_pred EEEeCCCeEEEEeCCCCceeEE---EecCCC-----CCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce------eee
Q 014104 248 ISGSSLGSIAISGLSSDQRVAT---LRSTDC-----TGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKS------LWE 312 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~---~~~~~~-----~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~------~~~ 312 (430)
+..+.|-.|-+|++.-...-.. ++. |. .-|++..|+|.. +.+.-.+..|.|++-|++...+ +.+
T Consensus 187 ~lSaDdLrINLWnl~i~D~sFnIVDiKP-~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe 265 (460)
T COG5170 187 LLSADDLRINLWNLEIIDGSFNIVDIKP-HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFE 265 (460)
T ss_pred eeeccceeeeeccccccCCceEEEeccC-ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhh
Confidence 4456688999999874333222 221 21 257888999865 4555667889999999984321 111
Q ss_pred ----------eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC-ceEEEEEeccC
Q 014104 313 ----------TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG-EVLSRCVMDIG 361 (430)
Q Consensus 313 ----------~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~ 361 (430)
+.+-...|..+. |+++|+++++-+. -+|++||++.. .++.++..|..
T Consensus 266 ~~~D~v~~~ff~eivsSISD~k-Fs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 266 LTIDGVDVDFFEEIVSSISDFK-FSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred hccCcccchhHHHHhhhhcceE-EcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence 112235677888 9999999988764 58999999854 57888876654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.3e-06 Score=77.36 Aligned_cols=172 Identities=15% Similarity=0.188 Sum_probs=118.6
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 240 (430)
.+..++ |+..|.+++.+.+........+... ...|.++++|+.||+|.|-.+-+.+....+. ...++.+++
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksia 119 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIA 119 (846)
T ss_pred hcceeeeccccceEEEEecCCccccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEE
Confidence 455666 8999999999887653221111111 3356679999999999999998888776665 457899999
Q ss_pred ecCC------CEEEEEeCCCeEEEEeCCC-CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 241 LSED------QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 241 ~~~~------~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
++|+ ..+++|+..| +.++.-+- |......-....++|.++.| .|+++|-++.+| |++||+.+.+.+..+
T Consensus 120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred eccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeecc
Confidence 9986 5799999888 77765332 11111112225679999999 688999888888 999999988877665
Q ss_pred ecCCCce------EEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 314 RISPNVV------YSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 314 ~~~~~~v------~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+.....+ ..+. |.++. .|+.| +..+|+|..++
T Consensus 196 ~~p~~~~R~e~fpphl~-W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 196 PPPSQSVRPELFPPHLH-WQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCCCCCCCcccCCCceE-ecCCC-eEEEe-cCCeEEEEEEe
Confidence 5433322 2333 54443 45444 55578888887
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-05 Score=67.79 Aligned_cols=238 Identities=13% Similarity=0.104 Sum_probs=139.6
Q ss_pred EEeccccceeEEEec---CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCC
Q 014104 107 QWKAHSVGVDQCRMK---RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNG 181 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~ 181 (430)
-+.+|...|..++|+ .|++..++.+.+|+|.|+++...+..+..+..+...+|..|....+ |-..|.|.+||+..
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 455777889999994 3489999999999999999999999999888899999998876655 67789999999987
Q ss_pred CcccccCCCC--ceeeeeEEEEcCCc-------eEEEecCCeEEEEECCCC----eeeEEeecCCCCeEEEEecC--CCE
Q 014104 182 LRSVFPSREG--TFMKGLCMRYFDPE-------AVVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSLSLSE--DQL 246 (430)
Q Consensus 182 ~~~~~~~~~~--~~~~~~~~~~~~~~-------l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~~~~~--~~~ 246 (430)
.+..+....+ ....+..+.+..+. ++++... ....|++.-. .++..+. ..+...++.+.+ +..
T Consensus 268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p~vlele-~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLPCVLELE-PPGICISMQYHGVSNHL 345 (463)
T ss_pred CCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCCcccccC-CCcceeeeeecCccceE
Confidence 6643222211 11112222222221 3333322 2445554321 1222222 245566666665 244
Q ss_pred EEEEeCCC------eEE-EEeCCCCceeEEEecCC-CCC------eEEEEEecCCCEEE-EEeCCCeEEEEeCCCCceee
Q 014104 247 IISGSSLG------SIA-ISGLSSDQRVATLRSTD-CTG------IKTLCYNPCSRLVF-AGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 247 l~~~~~dg------~i~-vwd~~~~~~~~~~~~~~-~~~------v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~ 311 (430)
+++.-.+. .+- --|-.+|..+..-+..+ ... -..+.-.++.++++ +|...+.+.+||..+.+.+.
T Consensus 346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 44443211 011 11223343332222111 110 01111223445555 55566789999999999998
Q ss_pred eeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcC
Q 014104 312 ETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 312 ~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~ 348 (430)
++... .+|..+..+..++. +|++- .|..++||..+
T Consensus 426 ~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 426 TLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred ecccC-cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 88754 77888875555554 55544 56788888654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00019 Score=71.65 Aligned_cols=224 Identities=11% Similarity=-0.002 Sum_probs=131.6
Q ss_pred cceeEEEe-c-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEc----CCCccc
Q 014104 113 VGVDQCRM-K-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRR----NGLRSV 185 (430)
Q Consensus 113 ~~v~~~~~-~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~----~~~~~~ 185 (430)
+.|.++.| - .+.++.+..+|.|.+-|.++......-...+++.+++|+||++.++ .+..+++.+-+- -..+.+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L 148 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPL 148 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccc
Confidence 57888888 3 3477778888999998988866554444567899999999999999 777677665332 111111
Q ss_pred ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-----ee------EEeecCCCCeEEEEecC-CCEEEEE---
Q 014104 186 FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-----CS------QIIRMHCAPVTSLSLSE-DQLIISG--- 250 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----~~------~~~~~~~~~i~~~~~~~-~~~l~~~--- 250 (430)
.. ....... .+.++....-.-+.-..|+ .+ .....+ +.=+++.|-- ++++++.
T Consensus 149 ~~-d~~~~sk----------~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 149 DA-DDERKSK----------FVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cc-ccccccc----------cceecccccceeeecchhhhcccccccccccccchhhc-cCCceEEEccCCcEEEEEEEe
Confidence 00 0000000 2333332211111111110 00 000111 1224678873 4677763
Q ss_pred --eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEeCCC---CceeeeeecCCCceEE
Q 014104 251 --SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT---TAGYASCWDLRT---MKSLWETRISPNVVYS 322 (430)
Q Consensus 251 --~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~---~~~~~~~~~~~~~v~~ 322 (430)
.....|++||-+ |..-..-. ...+.-.+++|-|.|..+++-. .|+.|.+|.-.. ++....+......|..
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se-~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSE-PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccC-cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 333799999976 54432222 2444567899999999988653 456788887432 2222223333344889
Q ss_pred EEEeeCCCCeEEE---EcCCCeEEEEEcCCCc
Q 014104 323 LQHLQNDTSTLVV---GGIDGVLRVLDQNTGE 351 (430)
Q Consensus 323 l~~~s~~~~~l~s---~~~dg~i~vwd~~~~~ 351 (430)
++ |+.++..|++ ......|++|-+.+..
T Consensus 295 L~-Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 295 LA-WNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ee-ecCCCCceeeeecccccceEEEEEecCeE
Confidence 98 9999998887 4455569999987654
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0005 Score=60.32 Aligned_cols=222 Identities=17% Similarity=0.163 Sum_probs=138.8
Q ss_pred CeEEEEecCCCeeEEeeecCCc--------eeEEEEecCCCEEE---EEeCCeEEEEEcCCCcccccCCCCceeeeeEEE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNA--------ASLVDFDFDESKIV---GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR 200 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~---~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 200 (430)
-.|.+||..+-.....+..+.. ....+++.|+++++ .+-...|.|.|++.++.+........ ..+-
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC---~~iy 143 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC---WLIY 143 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE---EEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE---EEEE
Confidence 3689999999988888776543 12377888999877 34467899999998875543333322 2222
Q ss_pred EcC-CceEEEecCCeEEEEECC-CCeeeEEe----ecCCCCeE-EEEec-CCCEEEEEeCCCeEEEEeCCCCcee--EEE
Q 014104 201 YFD-PEAVVGCEDGTARVFDMY-SRKCSQII----RMHCAPVT-SLSLS-EDQLIISGSSLGSIAISGLSSDQRV--ATL 270 (430)
Q Consensus 201 ~~~-~~l~~~~~dg~i~vwd~~-~~~~~~~~----~~~~~~i~-~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~--~~~ 270 (430)
+.+ ..+.+-|.||.+.-..+. .|+..... .....++. .-++. .+..++--+.+|.|+--|+...... ..+
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 333 338899999999988887 45544222 11122222 22333 2345666788999999888755432 222
Q ss_pred ecC---------CCCCeEEEEEecCCCEEEEEeC---CC-------eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 271 RST---------DCTGIKTLCYNPCSRLVFAGTT---AG-------YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 271 ~~~---------~~~~v~~~~~~~~~~~l~~~~~---dg-------~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
... ..+.-.-+++++..+.|++-.. ++ .|-++|+.+++.+.++... ..+.++. .+.+.+
T Consensus 224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~-Vsqd~~ 301 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIA-VSQDDK 301 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEE-EESSSS
T ss_pred cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEE-EccCCC
Confidence 110 0123445778876666654322 11 4888899999999988753 4677888 777766
Q ss_pred -eEEEE-cCCCeEEEEEcCCCceEEEEEe
Q 014104 332 -TLVVG-GIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 332 -~l~s~-~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+|++. ..++.+.+||..+|+.++++..
T Consensus 302 P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 302 PLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 66554 4689999999999999999875
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00065 Score=56.36 Aligned_cols=182 Identities=15% Similarity=0.144 Sum_probs=116.3
Q ss_pred EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEE-EEecC-CC
Q 014104 168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS-LSLSE-DQ 245 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-~~~~~-~~ 245 (430)
++..+.+.-.|..++...++..-+......++. .++.++.|+..|.+++.+..+|..++.+..-. .|.+ ....+ +.
T Consensus 29 gSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~g 106 (354)
T KOG4649|consen 29 GSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGG 106 (354)
T ss_pred ecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCc
Confidence 888899999999999887776666555544444 56669999999999999999998877776432 2222 22233 47
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC--ceeeeeecCCCceEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM--KSLWETRISPNVVYSL 323 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l 323 (430)
.+..|+.|+..+..|.++..++.+.+. ..+...+=+..|-...|+.+...|.+.--...++ ..+..... .+++.+-
T Consensus 107 lIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~-~~PiF~s 184 (354)
T KOG4649|consen 107 LIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATR-FGPIFAS 184 (354)
T ss_pred eEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhc-CCccccC
Confidence 999999999999999999999988764 2222233344553334444555565544444433 22211111 1333221
Q ss_pred -EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 324 -QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 324 -~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
.+. +..+..+.-||.+.-+| +.|+.+.++.
T Consensus 185 plcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 185 PLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 111 34566666788888888 6677776554
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00052 Score=65.99 Aligned_cols=239 Identities=14% Similarity=0.116 Sum_probs=142.3
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce--eEEEEe---cCCCEEEEEe------CCeEEEEEcCCCccccc
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA--SLVDFD---FDESKIVGLI------GTRICIWRRNGLRSVFP 187 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~---~~~~~l~~~~------~~~i~vwd~~~~~~~~~ 187 (430)
++.++.++.++.|+.+.-.|..+|+.+......... ..+.-+ .++..+++.. +|.|.-+|.++++.++.
T Consensus 117 av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 117 ALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred eEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 344567888889999999999999998776542111 111111 2444444432 58899999998886543
Q ss_pred CCCCcee-------------------------------eeeEEEEcCC--ceEEEec-----CC-----------eEEEE
Q 014104 188 SREGTFM-------------------------------KGLCMRYFDP--EAVVGCE-----DG-----------TARVF 218 (430)
Q Consensus 188 ~~~~~~~-------------------------------~~~~~~~~~~--~l~~~~~-----dg-----------~i~vw 218 (430)
....... .-..++.+.. .++.+.. ++ +|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 2221100 0011122322 2444431 12 67778
Q ss_pred ECCCCeeeEEeecCCCCeE---------EEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEec--------C---C
Q 014104 219 DMYSRKCSQIIRMHCAPVT---------SLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRS--------T---D 274 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~---------~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~---~ 274 (430)
|++||+....++.....++ -+.+. .+ ..++.+..+|.+.+.|.++|+.+...+. . .
T Consensus 277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 9999998877764322222 22221 23 3788899999999999999988632100 0 0
Q ss_pred C-CCe----------------------------EEEEEecCCCEEEEEeCC-----------------------------
Q 014104 275 C-TGI----------------------------KTLCYNPCSRLVFAGTTA----------------------------- 296 (430)
Q Consensus 275 ~-~~v----------------------------~~~~~~~~~~~l~~~~~d----------------------------- 296 (430)
. .++ ..++++|+..+++....+
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 0 000 125666665555443222
Q ss_pred ----CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 297 ----GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 297 ----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
|.|.-+|+.+++.+.+.........+.. ...+.+++.++.+|.++.+|.++|+.+..+...
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l--~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKEDFPLWGGVL--ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCCCCCCCcce--EECCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 4577888888888876653322222221 224567778888999999999999999988764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00016 Score=66.84 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=85.7
Q ss_pred eEEEEECCCCe--eeEEeecCCCCeEEEEecC--CCEEEEE----eCCCe----EEEEeCCCCce--eEEEecCCCCCeE
Q 014104 214 TARVFDMYSRK--CSQIIRMHCAPVTSLSLSE--DQLIISG----SSLGS----IAISGLSSDQR--VATLRSTDCTGIK 279 (430)
Q Consensus 214 ~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~--~~~l~~~----~~dg~----i~vwd~~~~~~--~~~~~~~~~~~v~ 279 (430)
.+.++.+..++ .+..+... ....++.|+. +..+.+. +.+|. -.+|++..++. +....-.....|.
T Consensus 185 Nl~L~~~~~~klEvL~yirTE-~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~ 263 (545)
T PF11768_consen 185 NLHLLSCSGGKLEVLSYIRTE-NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVI 263 (545)
T ss_pred cEEEEEecCCcEEEEEEEEec-CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcce
Confidence 45555554332 23333322 2335677762 2344332 33442 34566554432 2222223677999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 280 TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
+++++|+...|+.|+.||.|.+||...+... +....-..+.++ |+|+|..+++|+..|.+.+||+.-.
T Consensus 264 ~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~ia-WHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 264 CCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIA-WHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEE-EcCCCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999999998766333 222334456676 9999999999999999999998744
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00015 Score=62.77 Aligned_cols=190 Identities=16% Similarity=0.180 Sum_probs=128.3
Q ss_pred EEEEecCC--CEEEEEeCCC-eEEEEeCCCCceeEEEecCCCCC-eEEEEEecCCCEEEEEe-----CCCeEEEEeCC-C
Q 014104 237 TSLSLSED--QLIISGSSLG-SIAISGLSSDQRVATLRSTDCTG-IKTLCYNPCSRLVFAGT-----TAGYASCWDLR-T 306 (430)
Q Consensus 237 ~~~~~~~~--~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~-----~dg~i~i~d~~-~ 306 (430)
..++.+|. ..++.+-.-| ...+||.++++....+....... .-.-.|+|||++|++.- ..|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 35666663 5666666666 47789999999887776422111 12468999999999863 35789999999 6
Q ss_pred CceeeeeecCCCceEEEEEeeCCCCeEEEEc------------------CCCeEEEEEcCCCceEEEEEe----ccCcce
Q 014104 307 MKSLWETRISPNVVYSLQHLQNDTSTLVVGG------------------IDGVLRVLDQNTGEVLSRCVM----DIGSAS 364 (430)
Q Consensus 307 ~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~------------------~dg~i~vwd~~~~~~~~~~~~----~~~~~~ 364 (430)
.+.+.++..|.-.--.+. +.|||+.|+.+. .+.++.+-|..+|+.+..... |...+.
T Consensus 88 ~~ri~E~~s~GIGPHel~-l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELL-LMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred cEEEeEecCCCcChhhEE-EcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 778888887765555666 889997777653 244667778889999888654 555677
Q ss_pred eeeccCCceEEEeecccccC------------CcccccCC------CCCCCCeeEEEEc--CeEE-EEeeCCCeEEEEEe
Q 014104 365 SSSNKVSGVIERNEGRRLSA------------GCCIDRIP------KTIRPPITCLAVG--MKKV-VTTHNSKYIRLWKF 423 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~~------------~~~~~~~~------~~h~~~v~~v~~~--~~~l-~t~~~Dg~v~vw~~ 423 (430)
-++...||.+..-.-+.-+. +..+..+. ..-...|-+|+++ +..+ +|+-.-|.+.+||.
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 88888889885332222111 11111111 1234678889994 5555 66667889999999
Q ss_pred cCCC
Q 014104 424 NYSD 427 (430)
Q Consensus 424 ~~~~ 427 (430)
.+++
T Consensus 247 ~tg~ 250 (305)
T PF07433_consen 247 ATGR 250 (305)
T ss_pred CCCC
Confidence 8875
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.6e-05 Score=72.47 Aligned_cols=200 Identities=16% Similarity=0.136 Sum_probs=123.3
Q ss_pred eEEEEecCCCEEE-EEeCCeEEEEEcCCCc-ccccCCCCceeeeeEEEEcCCceEEEecCC-----eEEEEECCCC----
Q 014104 155 SLVDFDFDESKIV-GLIGTRICIWRRNGLR-SVFPSREGTFMKGLCMRYFDPEAVVGCEDG-----TARVFDMYSR---- 223 (430)
Q Consensus 155 ~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~---- 223 (430)
.+-++++.+..++ |+.+|.|.+++-.-.. .-+......++..+-.......|++.+.|+ .+++||++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 4566777777777 8899998887754333 223333222221121221223366666554 5899998642
Q ss_pred --eeeE--Eeec-----CCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC---CCceeEEEecCCCCCeEEEEEecCCCE-
Q 014104 224 --KCSQ--IIRM-----HCAPVTSLSLSED-QLIISGSSLGSIAISGLS---SDQRVATLRSTDCTGIKTLCYNPCSRL- 289 (430)
Q Consensus 224 --~~~~--~~~~-----~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~- 289 (430)
+++. .+.. ...++.+++++.+ ..+++|-.+|.|..+.-. ..-....+......+|+.+++..++..
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV 186 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence 3331 1112 2457889999966 899999999999988522 111122222224559999999988876
Q ss_pred EEEEeCCCeEEEEeCCCCce-eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 290 VFAGTTAGYASCWDLRTMKS-LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
+++++. ..|.+|.+....+ ...+..|...+.|.. +++....+++++ +..+.+||.....+-.++.
T Consensus 187 lFv~Tt-~~V~~y~l~gr~p~~~~ld~~G~~lnCss-~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 187 LFVATT-EQVMLYSLSGRTPSLKVLDNNGISLNCSS-FSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEEec-ceeEEEEecCCCcceeeeccCCccceeee-cCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 444444 3599999984432 344677777888887 666555455554 4579999988655555565
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7e-05 Score=65.59 Aligned_cols=222 Identities=13% Similarity=0.110 Sum_probs=120.7
Q ss_pred EEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEE
Q 014104 134 MRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVG 209 (430)
Q Consensus 134 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~ 209 (430)
+++.+..+.+...-+..+ ..+..++|+|..+-|+ ++.+..|.+.|+++...+..-........+||.-+... +++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 444444443333322222 2355699999887544 88999999999999876544444455666777776655 8888
Q ss_pred ecCCeEEEEECCCCee-eEEeec--CCCCeEEEEecC-------CCEEEEEeCCCeEEEEeCCC--CceeEEEecCCCCC
Q 014104 210 CEDGTARVFDMYSRKC-SQIIRM--HCAPVTSLSLSE-------DQLIISGSSLGSIAISGLSS--DQRVATLRSTDCTG 277 (430)
Q Consensus 210 ~~dg~i~vwd~~~~~~-~~~~~~--~~~~i~~~~~~~-------~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~ 277 (430)
-.+|.|.+||++..+- +..+.+ ...+|..++.-+ +.+++..+. .+..|.+.- +.....++....+.
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcc
Confidence 8999999999986542 222221 233555544432 233433333 244555431 22222233223456
Q ss_pred eEEEEEecCCCEEEEEeCCC-------eEEE-EeCCCCceeeeee-cCCC-------ceEEEEEeeCCCCeEE-EEcCCC
Q 014104 278 IKTLCYNPCSRLVFAGTTAG-------YASC-WDLRTMKSLWETR-ISPN-------VVYSLQHLQNDTSTLV-VGGIDG 340 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg-------~i~i-~d~~~~~~~~~~~-~~~~-------~v~~l~~~s~~~~~l~-s~~~dg 340 (430)
..++.+++-.+.++...... .|-. -|..+|.++...+ .+.+ .-..+. -.++..+++ ++...+
T Consensus 333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~-~~~~nn~iv~~gd~tn 411 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIR-AVEDNNYIVVVGDSTN 411 (463)
T ss_pred eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCccccccccccee-ccccccEEEEecCCcc
Confidence 66677766555555433221 1111 1222333332211 1100 001111 234555554 455668
Q ss_pred eEEEEEcCCCceEEEEEe
Q 014104 341 VLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~ 358 (430)
.+.+||..+++.++++..
T Consensus 412 ~lil~D~~s~evvQ~l~~ 429 (463)
T KOG1645|consen 412 ELILQDPHSFEVVQTLAL 429 (463)
T ss_pred eeEEeccchhheeeeccc
Confidence 899999999999999875
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.5e-05 Score=70.55 Aligned_cols=203 Identities=17% Similarity=0.191 Sum_probs=123.0
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC--CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee-
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR--EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS- 226 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~- 226 (430)
+..+...+++..+++++ |++.|.+++|+-.+++...... ......+.+++.+...+++|+..|.|.++-++.+.+-
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 34556678888999998 9999999999999888654444 2233444555566666889999999999987654321
Q ss_pred --E--E-eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc----eeEEEecCCCCCeEEEEEecCCCEEEEEeCC
Q 014104 227 --Q--I-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ----RVATLRSTDCTGIKTLCYNPCSRLVFAGTTA 296 (430)
Q Consensus 227 --~--~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 296 (430)
. . -+.|...|++++|+++ ..+++|...|+|..-.+.+.. ..+.+.. ..+.|-.+.+. ++.+|++....
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~ds~IVQlD~~-q~~LLVStl~r 190 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-EDSEIVQLDYL-QSYLLVSTLTR 190 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec-cCcceEEeecc-cceehHhhhhh
Confidence 1 1 1236789999999976 789999999999988887621 1122222 44567666665 34444444333
Q ss_pred CeEEEEeCCCCceeeeee--cCCC-ceEEEEEeeC---CCCeEEEEcCCCeEEEEEcC-CCceEEEEEec
Q 014104 297 GYASCWDLRTMKSLWETR--ISPN-VVYSLQHLQN---DTSTLVVGGIDGVLRVLDQN-TGEVLSRCVMD 359 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~~~--~~~~-~v~~l~~~s~---~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~ 359 (430)
..+++++.+. +..+- ...+ .-++.+||.- ..+-.+.++.-| .|+|..+ .|+.+++....
T Consensus 191 --~~Lc~tE~et-i~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~~G~V~~Thqfk 256 (726)
T KOG3621|consen 191 --CILCQTEAET-ITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADFAGEVIKTHQFK 256 (726)
T ss_pred --hheeecchhH-HHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeecceeEEEeeehh
Confidence 3455554332 11110 0111 1233333322 122333344444 7888765 47777777653
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-07 Score=76.78 Aligned_cols=56 Identities=30% Similarity=0.434 Sum_probs=47.3
Q ss_pred CCCCCCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHH
Q 014104 15 KRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCK 70 (430)
Q Consensus 15 ~~~~~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~ 70 (430)
.+...+.--+.+||+||++-||+.|..++|.+++.|||+|+.++.|+.+|+.+-..
T Consensus 89 ~~~~npgv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~ 144 (419)
T KOG2120|consen 89 NRENNPGVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLT 144 (419)
T ss_pred hcccCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccC
Confidence 33334444478999999999999999999999999999999999999999765433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00036 Score=67.19 Aligned_cols=202 Identities=9% Similarity=0.118 Sum_probs=123.1
Q ss_pred ceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce--eEEEEecCCCEEE-EEeC-C----eEEEEEcCCCc--
Q 014104 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA--SLVDFDFDESKIV-GLIG-T----RICIWRRNGLR-- 183 (430)
Q Consensus 114 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-~~~~-~----~i~vwd~~~~~-- 183 (430)
.|.|+.-+.+.++.|+.+|.|.+.+- .-+.+..++..... ..+-...+...|+ .+.| + .+++|+++...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 67777777779999999999988873 33444666654332 2222222334555 3333 2 58999987431
Q ss_pred ----cc-----cc---CCCCceeeeeEEEEcCCceEEEecCCeEEEEECC----CCeeeEEeecCCCCeEEEEecC-CCE
Q 014104 184 ----SV-----FP---SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY----SRKCSQIIRMHCAPVTSLSLSE-DQL 246 (430)
Q Consensus 184 ----~~-----~~---~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~----~~~~~~~~~~~~~~i~~~~~~~-~~~ 246 (430)
.+ +. ..+.....+++++.+-..+|+|-.+|.|..+.-. .|........-.++|+.+++.. +..
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 11 11 1122334445555555559999999999988421 1222222233457999999984 433
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCC
Q 014104 247 IISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISP 317 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~ 317 (430)
++-+..-..|.+|.+....+.......+..++.|..+++....+++++... +.+||....++-..+. +|.
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~-l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF-LYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce-EEEEcCCCcceeeeecCCCe
Confidence 222333467999998844433333333777999999997666566666554 9999998766666666 554
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0024 Score=56.41 Aligned_cols=226 Identities=11% Similarity=0.081 Sum_probs=130.9
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC------------
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS------------ 188 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~------------ 188 (430)
.+..|+.|..+| +.+++.........+.....+.-+...++-+.++.-.|+.+.++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~ 84 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLP 84 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccccccccc
Confidence 344888999988 8999983333333333333477788888888888778899999998764432211
Q ss_pred -CCCceeeeeEEE----EcCCceEEEecCCeEEEEECCCC-----eeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEE
Q 014104 189 -REGTFMKGLCMR----YFDPEAVVGCEDGTARVFDMYSR-----KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258 (430)
Q Consensus 189 -~~~~~~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~v 258 (430)
.......+..+. ..+...++......|.+|..... +..+.+. -...+.+++|.+ +.++.|.. ....+
T Consensus 85 ~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~-~~i~v~~~-~~f~~ 161 (275)
T PF00780_consen 85 TKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG-NKICVGTS-KGFYL 161 (275)
T ss_pred ccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC-CEEEEEeC-CceEE
Confidence 111111122222 11222344444458888877543 3445554 347788999984 45666654 45788
Q ss_pred EeCCCCceeEEEecCC-----------CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee--eeecCCCceEEEEE
Q 014104 259 SGLSSDQRVATLRSTD-----------CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW--ETRISPNVVYSLQH 325 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~ 325 (430)
.|+.++.....+.... ..++..+... ++.+|++- |..-...|. .|+... .+.-. ....+++
T Consensus 162 idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~-~~p~~~~- 235 (275)
T PF00780_consen 162 IDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWS-SAPQSVA- 235 (275)
T ss_pred EecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEcC-CchhEEE-
Confidence 8998776644432111 1134344443 45666653 333333343 354433 22222 3455665
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
+ ...+|++.+. +.|.||++.++++++++...
T Consensus 236 ~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 236 Y--SSPYLIAFSS-NSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred E--ECCEEEEECC-CEEEEEECcCCcEEEEEECC
Confidence 3 3457877765 55999999999999998753
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.23 E-value=9.3e-07 Score=84.41 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=113.1
Q ss_pred eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--eEEE
Q 014104 225 CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG--YASC 301 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i 301 (430)
..+.+..|+...+|++|+-+ +.++.|+..|.|+++++.+|........ |...|+.+.-+.+|..+.+.+.-. ...+
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCchHHH
Confidence 44667778889999999954 8999999999999999999999888887 899999999999998877655433 4678
Q ss_pred EeCCC-CceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc----CcceeeeccCCceEEE
Q 014104 302 WDLRT-MKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI----GSASSSSNKVSGVIER 376 (430)
Q Consensus 302 ~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----~~~~~~~~s~d~~v~~ 376 (430)
|++.. +.+.+.+.+. .++. |+.....-+.|.......+||+.++.++.++-... ....++.++++..+..
T Consensus 1172 W~~~s~~~~~Hsf~ed----~~vk-Fsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED----KAVK-FSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hccccccCcccccccc----ceee-hhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 99865 4555555432 3455 66555545556656679999999998887744322 2347899999888876
Q ss_pred eec
Q 014104 377 NEG 379 (430)
Q Consensus 377 ~~~ 379 (430)
+++
T Consensus 1247 ndG 1249 (1516)
T KOG1832|consen 1247 NDG 1249 (1516)
T ss_pred eCc
Confidence 655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0017 Score=60.66 Aligned_cols=141 Identities=9% Similarity=0.031 Sum_probs=79.7
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
..+..++++|+++.++.+.+|.-.++.....+....+. ....+|.. ...+++-..+++|.++.--..+....++.
T Consensus 33 ~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~----g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS----GLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp S--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE-----SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-----
T ss_pred cCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc----eeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcC
Confidence 34677999999999999999999999854433222111 11133333 34477777788888863222333233332
Q ss_pred CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 232 HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 232 ~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
. ..+..+- .+.+|...+ ++.|.+||..+++.++.+.. . +|..+.|+++|.+++..+.+. +.+++..
T Consensus 108 ~-~~~~~If--~G~LL~~~~-~~~i~~yDw~~~~~i~~i~v--~-~vk~V~Ws~~g~~val~t~~~-i~il~~~ 173 (443)
T PF04053_consen 108 P-FSVEKIF--GGNLLGVKS-SDFICFYDWETGKLIRRIDV--S-AVKYVIWSDDGELVALVTKDS-IYILKYN 173 (443)
T ss_dssp S-S-EEEEE---SSSEEEEE-TTEEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S-S-EEEEEE-
T ss_pred C-cccceEE--cCcEEEEEC-CCCEEEEEhhHcceeeEEec--C-CCcEEEEECCCCEEEEEeCCe-EEEEEec
Confidence 1 1233333 366666555 44899999999999999973 2 489999999999999887664 8887754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0039 Score=54.87 Aligned_cols=256 Identities=13% Similarity=0.059 Sum_probs=145.3
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEE-E----------eCCeEEEEEcCCCcccc--cCCCC------c
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG-L----------IGTRICIWRRNGLRSVF--PSREG------T 192 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----------~~~~i~vwd~~~~~~~~--~~~~~------~ 192 (430)
+.+.+.|.++++.+..+...-... +.++|+++.++. . ....|.+||..+-.... ..+.+ .
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred ceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 479999999999888887643333 567999998762 1 22458999999865321 11111 1
Q ss_pred eeeeeEEEEcCCceEEE--ecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCC-CCceeEE
Q 014104 193 FMKGLCMRYFDPEAVVG--CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS-SDQRVAT 269 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~ 269 (430)
......++.++..+++. +-.-+|.|.|+..++.+.++... + +..+--..++-|.+-+.||++....+. .|+...+
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-G-C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-G-CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-S-EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-C-EEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 22334555555554443 33456888888888887777532 2 222222234567788889999988887 5555433
Q ss_pred Eec---CCCCCe-EEEEEecCCCEEEEEeCCCeEEEEeCCCCceee--eeecC----------CCceEEEEEeeCCCCeE
Q 014104 270 LRS---TDCTGI-KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW--ETRIS----------PNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 270 ~~~---~~~~~v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~----------~~~v~~l~~~s~~~~~l 333 (430)
... ....++ ..-++...+..++--+.+|.|+-.|+....... .+..- .+.-.-++ +++..+.|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A-~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIA-YHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EE-EETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeee-eccccCeE
Confidence 211 111222 233444455555556788999998887544221 11110 01222344 65555544
Q ss_pred EEEc---CC-------CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 334 VVGG---ID-------GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 334 ~s~~---~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
++.- .+ ..|-++|+.+++.+.++.... ++.+|+
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~-------------------------------------~~~Si~ 295 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH-------------------------------------PIDSIA 295 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE-------------------------------------EESEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC-------------------------------------ccceEE
Confidence 4322 11 147778889999998887521 355666
Q ss_pred E--c-CeEEEE-eeCCCeEEEEEecCCCc
Q 014104 404 V--G-MKKVVT-THNSKYIRLWKFNYSDK 428 (430)
Q Consensus 404 ~--~-~~~l~t-~~~Dg~v~vw~~~~~~~ 428 (430)
. + ..+|++ ...++.|.+||..+|+.
T Consensus 296 Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 296 VSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred EccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 6 2 334544 45689999999999864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00071 Score=48.89 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=66.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
|++|+.|..|++|+ ..+.+..+. ..+.|+++.-.....|+.+..+|+|-+|+- .+.+...+. ...+.++.+..
T Consensus 18 LlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~--~~RlWRiKS--K~~~~~~~~~D 90 (111)
T PF14783_consen 18 LLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDR--SQRLWRIKS--KNQVTSMAFYD 90 (111)
T ss_pred EEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeC--cceeeeecc--CCCeEEEEEEc
Confidence 99999999999998 446777776 456788888877788999999999999985 345555654 33466666543
Q ss_pred -CC---CEEEEEeCCCeEE
Q 014104 286 -CS---RLVFAGTTAGYAS 300 (430)
Q Consensus 286 -~~---~~l~~~~~dg~i~ 300 (430)
++ .-|++|-.+|.|-
T Consensus 91 ~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 91 INGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CCCCCceEEEEEecCCeEE
Confidence 32 3788998888774
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=70.23 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=80.3
Q ss_pred eeeEEEEcCCceEEEe----cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEE
Q 014104 195 KGLCMRYFDPEAVVGC----EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~ 269 (430)
.+.+|.+..|.+++++ ..|+|.||- ++|++..... ..-.+++++|+|. -.++.|-.-|.+.+|...+.+. ++
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence 4456666677766655 458888885 4676543332 1223567999997 4677788889999999776554 44
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
....|..+|..+.|+|+|..++++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 555588999999999999999999999999999765
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0042 Score=57.89 Aligned_cols=173 Identities=13% Similarity=0.096 Sum_probs=88.1
Q ss_pred eeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEe-------ecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc-e
Q 014104 196 GLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQII-------RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ-R 266 (430)
Q Consensus 196 ~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~ 266 (430)
++++.+... .|++-..||.++++|+. |+....+ ......+....+..+..++.. .++.+.+.+-.... .
T Consensus 83 iv~~~wt~~e~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt-~~~~~~~v~n~~~~~~ 160 (410)
T PF04841_consen 83 IVGMGWTDDEELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT-GNNRFYVVNNIDEPVK 160 (410)
T ss_pred EEEEEECCCCeEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC-CCCeEEEEeCccccch
Confidence 355555444 48888999999999985 4331111 111122222233323444333 34444443322211 1
Q ss_pred eEEEe---cCCC----C-CeEE-EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 267 VATLR---STDC----T-GIKT-LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 267 ~~~~~---~~~~----~-~v~~-~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
.+.+. .... . .... ..++.+....+....++.+.+.+....+. +. ..+++..|+ +||+|+++|.-.
T Consensus 161 ~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~ia-vSpng~~iAl~t 235 (410)
T PF04841_consen 161 LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIA-VSPNGKFIALFT 235 (410)
T ss_pred hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEE-ECCCCCEEEEEE
Confidence 11111 1000 0 0100 22444444445545555566444332211 22 236799998 999999999999
Q ss_pred CCCeEEEEEcCCCceEEEEEec--cCcceeeeccCCceEE
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMD--IGSASSSSNKVSGVIE 375 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~s~d~~v~ 375 (430)
.+|.+.+...+-.+.+..+... .....+.-++.|..+.
T Consensus 236 ~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l 275 (410)
T PF04841_consen 236 DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVL 275 (410)
T ss_pred CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEE
Confidence 9999999987666666666655 2233444444454443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0014 Score=61.86 Aligned_cols=147 Identities=12% Similarity=0.082 Sum_probs=96.3
Q ss_pred eeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeee-c-CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc---c--c
Q 014104 115 VDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYS-L-PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS---V--F 186 (430)
Q Consensus 115 v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~---~--~ 186 (430)
.+|++..+.+++.|+.-|.+.+|+-.+++....-. + +....+.+++++..+++ ++..|.|.++-++.... . .
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 45666667799999999999999977765443322 2 33445577888888777 88889999988876431 1 1
Q ss_pred cCCC--CceeeeeEEEEcCCceEEEecCCeEEEEECCCCe----eeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 187 PSRE--GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISG 260 (430)
Q Consensus 187 ~~~~--~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd 260 (430)
..+. +..++.++|..++..+++|...|.|..-.+.+.. ..+.+-...+.|..+.+....++++... ...+++
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~--r~~Lc~ 195 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLT--RCILCQ 195 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhh--hhheee
Confidence 2223 3455667777777789999999999988876621 1233334456777777766555554433 234455
Q ss_pred CCC
Q 014104 261 LSS 263 (430)
Q Consensus 261 ~~~ 263 (430)
.+.
T Consensus 196 tE~ 198 (726)
T KOG3621|consen 196 TEA 198 (726)
T ss_pred cch
Confidence 543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.5e-05 Score=69.01 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=61.4
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
...+.|.+++++|+ +.++.|+.||+|.+||...+..... . ..-.++.++|+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k--a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K--AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e--ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 35678999999987 8999999999999999876644322 2 344688999999999999999999999999864
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00087 Score=63.73 Aligned_cols=170 Identities=9% Similarity=-0.008 Sum_probs=108.4
Q ss_pred eCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEe-----CCeEEEEEcCCCcccccCCCCceeeeeEEEEcC
Q 014104 129 VGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLI-----GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD 203 (430)
Q Consensus 129 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (430)
-..+.+.+.|.++.+....+........+.+++++++++.+. ..++...+......+....... .-.+..++
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~---iea~vkdG 288 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR---IEEAVKAG 288 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH---HHHhhhCC
Confidence 335678888999888888888777777799999999988332 1223333322211110000000 00111233
Q ss_pred CceEEEecCCeEEEEECCC-----CeeeEEeecCCCCeEEEEecCC-CEE-EEEeCCCeEEEEeCCCCce----------
Q 014104 204 PEAVVGCEDGTARVFDMYS-----RKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIAISGLSSDQR---------- 266 (430)
Q Consensus 204 ~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~vwd~~~~~~---------- 266 (430)
..... .++.|.+.|..+ .+.+..+. -......+.++|+ +++ +++..+.+|.|.|+.+.+.
T Consensus 289 K~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~ 365 (635)
T PRK02888 289 KFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD 365 (635)
T ss_pred CEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence 33333 356899999988 34555554 4556789999987 544 4555689999999987553
Q ss_pred --eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 267 --VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 267 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+.+.+ ........+|+++|+...+-.-|..|..||+..
T Consensus 366 ~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 366 AVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred eEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 33443 233566789999998777888899999999875
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0045 Score=54.65 Aligned_cols=218 Identities=16% Similarity=0.158 Sum_probs=117.4
Q ss_pred EEEcCCceEEEecCCeEEEEECCC-CeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEE------
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATL------ 270 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~------ 270 (430)
....+..++.|+.+| +.+++... ....... +...|..+...+. +.+++-+ |+.+.++++..-......
T Consensus 3 ~~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 3 ADSWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred cccCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence 334556699999998 89999833 3333333 2334999999876 5554443 599999998765443311
Q ss_pred -------ecCCCCCeEEEE--EecCC-CEEEEEeCCCeEEEEeCCCC-----ceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 271 -------RSTDCTGIKTLC--YNPCS-RLVFAGTTAGYASCWDLRTM-----KSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 271 -------~~~~~~~v~~~~--~~~~~-~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
.......+...+ -.+.+ ..|+++ ....|.+|..... +...++... ..+.++. |. ++.++.
T Consensus 79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~-~~--~~~i~v 153 (275)
T PF00780_consen 79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIA-FL--GNKICV 153 (275)
T ss_pred ccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-CCcEEEE-Ee--CCEEEE
Confidence 111223455444 11233 345544 4457888877652 344555543 6788888 54 566777
Q ss_pred EcCCCeEEEEEcCCCceEEEEEeccCc------------ceeeeccCCceEEEeecc--ccc-CCcccccCCCCCCCCee
Q 014104 336 GGIDGVLRVLDQNTGEVLSRCVMDIGS------------ASSSSNKVSGVIERNEGR--RLS-AGCCIDRIPKTIRPPIT 400 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~~~~~~~~~~~------------~~~~~~s~d~~v~~~~~~--~~~-~~~~~~~~~~~h~~~v~ 400 (430)
|..+ ...+.|+.++....-+...... ..+...+.+..+...+.. -+. .+...+...-.-.....
T Consensus 154 ~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~fv~~~G~~~r~~~i~W~~~p~ 232 (275)
T PF00780_consen 154 GTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVFVNKNGEPSRKSTIQWSSAPQ 232 (275)
T ss_pred EeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEEEcCCCCcCcccEEEcCCchh
Confidence 7644 4888898876654433221111 111111111111110000 000 01111100000123556
Q ss_pred EEEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 401 CLAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 401 ~v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
++++...+|+..+.+ .|-||++.+++
T Consensus 233 ~~~~~~pyli~~~~~-~iEV~~~~~~~ 258 (275)
T PF00780_consen 233 SVAYSSPYLIAFSSN-SIEVRSLETGE 258 (275)
T ss_pred EEEEECCEEEEECCC-EEEEEECcCCc
Confidence 777778888887775 49999999885
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.014 Score=54.01 Aligned_cols=204 Identities=14% Similarity=0.110 Sum_probs=141.3
Q ss_pred eeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec---CCeEEEEECCCCeeeEE
Q 014104 154 ASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE---DGTARVFDMYSRKCSQI 228 (430)
Q Consensus 154 ~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~ 228 (430)
...+++++.+..++ ...++.|.+.|.++.........+.....+.+.+.++.+.++.. ++++.+.|..+++.+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 44578888888666 34479999999777665444444444455777777777655554 68999999999988877
Q ss_pred eecCCCCeEEEEecCC-CEEE-EEeCCCeEEEEeCCCCceeE-E----EecCCCCCeEEEEEecCCCEEEEEeCC---Ce
Q 014104 229 IRMHCAPVTSLSLSED-QLII-SGSSLGSIAISGLSSDQRVA-T----LRSTDCTGIKTLCYNPCSRLVFAGTTA---GY 298 (430)
Q Consensus 229 ~~~~~~~i~~~~~~~~-~~l~-~~~~dg~i~vwd~~~~~~~~-~----~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~ 298 (430)
...-..+ ..+++.|+ +.++ +-..++.|.+.|..+....+ . .. .......+.++|+|+++.+.... +.
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~--~~~~P~~i~v~~~g~~~yV~~~~~~~~~ 232 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG--VGTGPAGIAVDPDGNRVYVANDGSGSNN 232 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc--cCCCCceEEECCCCCEEEEEeccCCCce
Confidence 5543344 78899876 5444 44578999999977655543 1 11 23356778999999977765544 58
Q ss_pred EEEEeCCCCceeee-eecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCCceEEEEEeccC
Q 014104 299 ASCWDLRTMKSLWE-TRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 299 i~i~d~~~~~~~~~-~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+...|..++..... ..........+. .+|+|..+.+.. ..+.+.+-|..+............
T Consensus 233 v~~id~~~~~v~~~~~~~~~~~~~~v~-~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 233 VLKIDTATGNVTATDLPVGSGAPRGVA-VDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred EEEEeCCCceEEEeccccccCCCCcee-ECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccccc
Confidence 99999998776654 222211345566 899999888874 458999999998888777665443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0035 Score=56.73 Aligned_cols=172 Identities=14% Similarity=0.172 Sum_probs=103.0
Q ss_pred CeEEEEecCCCeeEEeeecCCc--eeEEE-EecC------CCEEE-EEe---------C-CeEEEEEcCCC-----cccc
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNA--ASLVD-FDFD------ESKIV-GLI---------G-TRICIWRRNGL-----RSVF 186 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~--~~~~~-~~~~------~~~l~-~~~---------~-~~i~vwd~~~~-----~~~~ 186 (430)
..|++.|..+.+.+..+..+.. +.+++ +... ..+++ |+. . |.+.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888887777765433 33222 2222 34455 432 2 88999999884 2111
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-eeEEeec-CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC-
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRM-HCAPVTSLSLSEDQLIISGSSLGSIAISGLSS- 263 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~-~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~- 263 (430)
.........+.++...+..++++. ++.|.+|++...+ ....-.. ....+.++... +++++.|.....+.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~-~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF-KNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-TTEEEEEESSSSEEEEEEETT
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc-ccEEEEEEcccCEEEEEEEcc
Confidence 111111233577777777755544 5799999998777 3332221 22366677665 44888888878777774432
Q ss_pred CceeEEE-ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 264 DQRVATL-RSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 264 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+..+..+ .......++++.|-++++.++++..+|.+.++...
T Consensus 160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 3323222 22234478899998777899999999999998875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0093 Score=59.64 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=74.5
Q ss_pred CCceEEEecCCeEEEEECCCCeeeEEeecCCCC--------eEEEEecC-----------------CCEEEEEeCCCeEE
Q 014104 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP--------VTSLSLSE-----------------DQLIISGSSLGSIA 257 (430)
Q Consensus 203 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------i~~~~~~~-----------------~~~l~~~~~dg~i~ 257 (430)
+..++.++.++.|.-.|..+|+.+..+...... ...+.+.. +..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 555888888999999999999998887633211 11222221 24788889999999
Q ss_pred EEeCCCCceeEEEecCCCCCeE-------------EEEEec--CCCEEEEEeC----------CCeEEEEeCCCCceeee
Q 014104 258 ISGLSSDQRVATLRSTDCTGIK-------------TLCYNP--CSRLVFAGTT----------AGYASCWDLRTMKSLWE 312 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~ 312 (430)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..
T Consensus 274 ALDA~TGk~~W~fg~--~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTGKLCEDFGN--NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCCCEEEEecC--CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999999987642 11110 111111 1345666643 68899999999999987
Q ss_pred ee
Q 014104 313 TR 314 (430)
Q Consensus 313 ~~ 314 (430)
+.
T Consensus 352 ~~ 353 (764)
T TIGR03074 352 WD 353 (764)
T ss_pred Ee
Confidence 65
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0071 Score=55.72 Aligned_cols=193 Identities=13% Similarity=0.183 Sum_probs=97.7
Q ss_pred eeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC--------C
Q 014104 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS--------R 223 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--------~ 223 (430)
+..++|+++..-|+ +...|.|.+|.....+.-- ....... ...+.. ....++.-.+-|+.. |
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~--~~~~~~------~~~~~~~~~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDL--DYNFRR------FSLNNSPGKLTDISDRAPPSLKEG 75 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SEE
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCccc--Cccccc------ccccCCCcceEEehhhCCcccccc
Confidence 45678888766666 8889999998876543211 0000000 000000 001111222334322 1
Q ss_pred -eeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEec-------CCCCCeEEEEEec-----CC---
Q 014104 224 -KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS-------TDCTGIKTLCYNP-----CS--- 287 (430)
Q Consensus 224 -~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~-----~~--- 287 (430)
.+...+....++|++++.++=.+++.|..+|.+.|.|+|....+..-.- .....++++.|.. |+
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred cCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence 2334455568999999998668999999999999999998877766321 1223688888862 22
Q ss_pred CEEEEEeCCCeEEEEeCCC---Cce----eeeeecCCCceEEEEEeeCCC---------------------CeEEEEcCC
Q 014104 288 RLVFAGTTAGYASCWDLRT---MKS----LWETRISPNVVYSLQHLQNDT---------------------STLVVGGID 339 (430)
Q Consensus 288 ~~l~~~~~dg~i~i~d~~~---~~~----~~~~~~~~~~v~~l~~~s~~~---------------------~~l~s~~~d 339 (430)
-.+++|+..|.+.+|.+.. +.. ......+.+.|..+..++.+. .+++++ .+
T Consensus 156 i~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se 234 (395)
T PF08596_consen 156 ICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SE 234 (395)
T ss_dssp EEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--S
T ss_pred eEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cc
Confidence 4788999999999998752 211 111224556666665443221 133333 45
Q ss_pred CeEEEEEcCCCceEEE
Q 014104 340 GVLRVLDQNTGEVLSR 355 (430)
Q Consensus 340 g~i~vwd~~~~~~~~~ 355 (430)
..++++...+.+....
T Consensus 235 ~~irv~~~~~~k~~~K 250 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHK 250 (395)
T ss_dssp SEEEEE-TT---EEEE
T ss_pred cceEEEeCCCCcccce
Confidence 6788888776665443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.5e-06 Score=68.83 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=45.2
Q ss_pred ccCCcHHHHHHHhc-----CCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 24 IESLNGDIICMIFS-----SLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 24 ~~~Lp~e~~~~i~~-----~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
|..||+|+++.||. .+|.++|.++++|||.|+..+.++.+|+..|.+.|
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW 160 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVW 160 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHH
Confidence 57899999999985 45889999999999999999999999999999887
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.011 Score=54.35 Aligned_cols=242 Identities=13% Similarity=0.052 Sum_probs=125.7
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC------------------c
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG------------------T 192 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~------------------~ 192 (430)
.+.+.++|+++++...............|+|+|+.++-..++.|.+++..++........+ .
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~ 101 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD 101 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred ceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence 4578899999977665554456677899999999999888999999988765432111111 1
Q ss_pred eeeeeEEEEcCCceEEEecC-C-----------------------------------eEEEEECCCCeeeEE--e---ec
Q 014104 193 FMKGLCMRYFDPEAVVGCED-G-----------------------------------TARVFDMYSRKCSQI--I---RM 231 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~d-g-----------------------------------~i~vwd~~~~~~~~~--~---~~ 231 (430)
....+.|++++..|+....| . .+.|+|+.+++.... . ..
T Consensus 102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~ 181 (353)
T PF00930_consen 102 RRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNP 181 (353)
T ss_dssp SSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHT
T ss_pred cccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCC
Confidence 12345566666654433221 1 223345544433211 0 11
Q ss_pred CCCCeEEEEecCC-CEEEEE--eCC---CeEEEEeCCCCceeEEEecCCCCC---eEEEEEe-cCCC-EEEEEeCCCe--
Q 014104 232 HCAPVTSLSLSED-QLIISG--SSL---GSIAISGLSSDQRVATLRSTDCTG---IKTLCYN-PCSR-LVFAGTTAGY-- 298 (430)
Q Consensus 232 ~~~~i~~~~~~~~-~~l~~~--~~d---g~i~vwd~~~~~~~~~~~~~~~~~---v~~~~~~-~~~~-~l~~~~~dg~-- 298 (430)
...-+..+.|.++ ..++.. ..+ ..+.+.|..++............. .....|. +++. ++.....+|.
T Consensus 182 ~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 182 QDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred CccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 2335677778755 313333 222 256777887766544443323332 2345554 5555 4445556665
Q ss_pred EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE-EEcCCC----eEEEEEcCCCceEEEEEeccCcceeeeccCCce
Q 014104 299 ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV-VGGIDG----VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGV 373 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~-s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~ 373 (430)
|++++...+. ...+....-.|..+..++++++.|+ ++..++ .|+.-++..+..+..+.........+++|+||.
T Consensus 262 ly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~ 340 (353)
T PF00930_consen 262 LYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGK 340 (353)
T ss_dssp EEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSS
T ss_pred EEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCC
Confidence 5556666554 3355555566767666888877554 454422 444445442233333333222222444444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.01 Score=54.65 Aligned_cols=222 Identities=11% Similarity=0.083 Sum_probs=106.4
Q ss_pred hhcccCCEeEEEEeccccceeEEEecC-CeEEEEeCCCeEEEEecCCCeeEEeeecCC---------ceeEEEEec----
Q 014104 96 FALEEGRIDIDQWKAHSVGVDQCRMKR-GLILTGVGDKVMRLWSLEGYKCVEEYSLPN---------AASLVDFDF---- 161 (430)
Q Consensus 96 ~~~~~~~~~~~~l~~h~~~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~---- 161 (430)
..+.+|-.+..-++...++|++++.+| |+++.|..+|.+.|.|+.....+..-...+ .+..+.|..
T Consensus 70 ~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 70 PSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred cccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence 345566677888888899999999976 699999999999999998877776533211 223344431
Q ss_pred -CCC---E-EEEEeCCeEEEEEcCC-CcccccCCCCceeeeeEEEEcCCceEEEecC--CeEEEEECCCCeeeEEeecCC
Q 014104 162 -DES---K-IVGLIGTRICIWRRNG-LRSVFPSREGTFMKGLCMRYFDPEAVVGCED--GTARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 162 -~~~---~-l~~~~~~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~ 233 (430)
|+. . ++|+..|.+.+|.+.- ....+ ........ ....+ ..|...|.++++........-
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f------~v~~~~~~-------~~~~~~i~~I~~i~~~~G~~a~At~~~~ 216 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRF------SVQFAGAT-------TNHDSPILSIIPINADTGESALATISAM 216 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-E------EEEEEEEE---------SS----EEEEEETTT--B-B-BHHHH
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCce------EEEEeecc-------ccCCCceEEEEEEECCCCCcccCchhHh
Confidence 221 1 2255556666665421 10000 00000000 00001 112223333332211100000
Q ss_pred CCeEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEE-----ecCCCEEEEEeCCCeEEEEeCC
Q 014104 234 APVTSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCY-----NPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 234 ~~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
. ...++ ..++....+..++++..-+.+..++... .......+.+ ...+..|++-..+|.|++|.+.
T Consensus 217 ~-----~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 217 Q-----GLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp H-----GGGGT----EEEEEE-SSEEEEE-TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred h-----ccccCCCcCcEEEEEcccceEEEeCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 0 00011 2234445578899999988887666552 2222333444 2356678888999999999999
Q ss_pred CCceeeeeecCC----CceEEEEEeeCCCCeEEEEc
Q 014104 306 TMKSLWETRISP----NVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 306 ~~~~~~~~~~~~----~~v~~l~~~s~~~~~l~s~~ 337 (430)
..+.+..+.... ..+.... ++++|..++-.+
T Consensus 291 ~Lkei~~~~l~~~~d~~~~~~ss-is~~Gdi~~~~g 325 (395)
T PF08596_consen 291 SLKEIKSVSLPPPLDSRRLSSSS-ISRNGDIFYWTG 325 (395)
T ss_dssp T--EEEEEE-SS---HHHHTT-E-E-TTS-EEEE-S
T ss_pred CchHhhcccCCCccccccccccE-ECCCCCEEEEeC
Confidence 988887766532 2233333 667777665554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0042 Score=56.20 Aligned_cols=173 Identities=17% Similarity=0.187 Sum_probs=105.3
Q ss_pred CeEEEEECCCCeeeEEeecCC-CCeEEEE---ecC-----CCEEEEEeC----------CCeEEEEeCCCC-----ceeE
Q 014104 213 GTARVFDMYSRKCSQIIRMHC-APVTSLS---LSE-----DQLIISGSS----------LGSIAISGLSSD-----QRVA 268 (430)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~-~~i~~~~---~~~-----~~~l~~~~~----------dg~i~vwd~~~~-----~~~~ 268 (430)
+.|++.|..+.+.+..+.-.. ..+.+++ +.. ..+++.|+. .|.|.++++... +...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 368888988887776654322 2344443 332 357777653 289999999884 2222
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-eeeeeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK-SLWETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
.......++|++++-- +++ |+++. .+.|.+|++...+ ....-.. ....+.++. ..+.+++.|.....+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~---~~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS---VFKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE---EETTEEEEEESSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEe---ccccEEEEEEcccCEEEEE
Confidence 2222256789998876 444 55543 4679999998777 4332222 223566655 3366899998888888775
Q ss_pred cCC-CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEe
Q 014104 347 QNT-GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 347 ~~~-~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~ 423 (430)
.+. +..+..+..... ...++++.+ +++.++.+..+|.|.++..
T Consensus 156 ~~~~~~~l~~va~d~~----------------------------------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 156 YDEENNKLILVARDYQ----------------------------------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EETTTE-EEEEEEESS-----------------------------------BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred EEccCCEEEEEEecCC----------------------------------CccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence 543 333433333222 124667666 5668999999999999988
Q ss_pred cC
Q 014104 424 NY 425 (430)
Q Consensus 424 ~~ 425 (430)
..
T Consensus 202 ~~ 203 (321)
T PF03178_consen 202 NP 203 (321)
T ss_dssp -S
T ss_pred CC
Confidence 74
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.016 Score=58.04 Aligned_cols=222 Identities=13% Similarity=0.056 Sum_probs=131.4
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEE
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR 200 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 200 (430)
-++.++.++.++.|.-.|..+|+.+..+......... ......+.+.+|+....... .... ..-.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~--------~~~~~cRGvay~~~p~~~~~-----~~~~--~~p~ 257 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG--------RQHQTCRGVSYYDAPAAAAG-----PAAP--AAPA 257 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc--------cccccccceEEecCCccccc-----cccc--cccc
Confidence 4678888888999999999999999887754321110 00001123333443211100 0000 0001
Q ss_pred EcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeE-------------EEEecC---CCEEEEEeC----------CC
Q 014104 201 YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT-------------SLSLSE---DQLIISGSS----------LG 254 (430)
Q Consensus 201 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~-------------~~~~~~---~~~l~~~~~----------dg 254 (430)
..+..++.++.|+.+.-.|.++|+.+..+.. .+.|. .+.-.| ++.++.|+. +|
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCc
Confidence 1234588899999999999999998877642 22221 111112 456666643 68
Q ss_pred eEEEEeCCCCceeEEEecCCC--------C--------Ce-EEEEEecCCCEEEEEe------------------CCCeE
Q 014104 255 SIAISGLSSDQRVATLRSTDC--------T--------GI-KTLCYNPCSRLVFAGT------------------TAGYA 299 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~--------~--------~v-~~~~~~~~~~~l~~~~------------------~dg~i 299 (430)
.|+-+|.++|+.+..+..... + .+ ..++++|....++.+. ..+.|
T Consensus 337 ~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred EEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceE
Confidence 899999999999888753110 0 11 2345555544444321 23457
Q ss_pred EEEeCCCCceeeeeecCCCceEE--------EEEeeC-CCC---eEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 300 SCWDLRTMKSLWETRISPNVVYS--------LQHLQN-DTS---TLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~~~~v~~--------l~~~s~-~~~---~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.-.|.++|+....++.....++. +.-+.. +|+ .++.++.+|.+++.|.++|+.+.....
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred EEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 77888999988877652221111 111222 553 789999999999999999998876543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0021 Score=46.51 Aligned_cols=99 Identities=15% Similarity=0.215 Sum_probs=64.1
Q ss_pred eeEEEe---c-CC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 115 VDQCRM---K-RG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 115 v~~~~~---~-~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
|+++++ . +| .|+.|+.|..||+|+-+ +.+..+...+.+..++-...+++.++..+|+|-+|+-... ++..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R--lWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR--LWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce--eeee
Confidence 566665 2 33 89999999999999744 6777887777777777666666555899999988876332 2332
Q ss_pred CCCceeeeeEEEEcCC----ceEEEecCCeEEE
Q 014104 189 REGTFMKGLCMRYFDP----EAVVGCEDGTARV 217 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~----~l~~~~~dg~i~v 217 (430)
...+....+....... .|++|-.+|.|-+
T Consensus 78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ccCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2222222222222221 2888888887743
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00094 Score=65.88 Aligned_cols=136 Identities=10% Similarity=0.055 Sum_probs=97.5
Q ss_pred ecCCeEEEEECCCCeeeEEeecCCCC-eEEEEecC------CCEEEEEeCCCeEEEEeCCCCc--eeEE-E-ecCCCCCe
Q 014104 210 CEDGTARVFDMYSRKCSQIIRMHCAP-VTSLSLSE------DQLIISGSSLGSIAISGLSSDQ--RVAT-L-RSTDCTGI 278 (430)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~--~~~~-~-~~~~~~~v 278 (430)
.....++-.|++.|+.+...+.|... |..++-.. +...+.|-.+..+..||.|-.. .+.. . .-......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578999999999999999877654 66665431 2356677888999999998532 2211 1 11133467
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 279 KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.|++-+.+| +||+|+.+|.|++||--..+....+.+-..+|..+. .+.||++|++.+ +..+.++++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iD-vt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGID-VTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEE-ecCCCcEEEEee-cceEEEEEEe
Confidence 888877666 689999999999999543333344666678999999 999999988776 5578787763
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.026 Score=50.11 Aligned_cols=195 Identities=17% Similarity=0.198 Sum_probs=105.6
Q ss_pred EecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC----
Q 014104 159 FDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH---- 232 (430)
Q Consensus 159 ~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---- 232 (430)
|.++...|+ --..+.|.-|+..+++.......+... ..........+.++..| +.+++.+++..+..+..-
T Consensus 32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~--~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~~ 108 (307)
T COG3386 32 WDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFS--SGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEPEDGL 108 (307)
T ss_pred CcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcc--cceeecCCCeEEEEccc-cEEEeccCCceeEEeccccCCC
Confidence 334444333 334566777777655432222222221 11122223244444443 556666655543222111
Q ss_pred -CCCeEEEEecCCCEEEEEeCC------------CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCe
Q 014104 233 -CAPVTSLSLSEDQLIISGSSL------------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AGY 298 (430)
Q Consensus 233 -~~~i~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~ 298 (430)
....+.+...|+..+..++.. |.++..|. .+..++.+.. +-..-+.++||||++.|+.+.. .+.
T Consensus 109 ~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~~~~~NGla~SpDg~tly~aDT~~~~ 186 (307)
T COG3386 109 PLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-DLTIPNGLAFSPDGKTLYVADTPANR 186 (307)
T ss_pred CcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-cEEecCceEECCCCCEEEEEeCCCCe
Confidence 123456666665444444433 33444443 4555554443 3446678999999988876655 477
Q ss_pred EEEEeCCC--Cce-----eeeeecCCCceEEEEEeeCCCCeEEEEcCCC-eEEEEEcCCCceEEEEEecc
Q 014104 299 ASCWDLRT--MKS-----LWETRISPNVVYSLQHLQNDTSTLVVGGIDG-VLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 299 i~i~d~~~--~~~-----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~ 360 (430)
|.-|++.. +.. ...+....+..-.++ ...+|.+.+++-.+| .|.+|+.+ |+++..+....
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~-vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMA-VDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceE-EeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 88887752 111 112222334555565 777888775555554 89999988 99999988763
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.022 Score=48.55 Aligned_cols=179 Identities=12% Similarity=0.056 Sum_probs=115.0
Q ss_pred eeEEEe-cCC-eEEEEeCCC--eEEEEecCCCeeEEeeecCCceeE--EEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 115 VDQCRM-KRG-LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASL--VDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 115 v~~~~~-~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
...+.| .++ ++-+.+.-| .|+.+|+.+++.......+..... +++..|.-+.+.-.++...+||.++.+.+-..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~ 126 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTF 126 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEE
Confidence 346788 777 556666655 799999999999888877655443 34433322233888999999999987643222
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC-----CCCeEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH-----CAPVTSLSLSEDQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~ 263 (430)
.-. .....++.++..++.......++.+|..+.+..+.+... -..++-+.+.++...|-.-....|...|..+
T Consensus 127 ~y~--~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~t 204 (264)
T PF05096_consen 127 PYP--GEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPET 204 (264)
T ss_dssp E-S--SS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT
T ss_pred ecC--CcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCC
Confidence 111 133556677888888877889999999888777666532 1245667887776666667778889999999
Q ss_pred CceeEEEecC--------------CCCCeEEEEEecCCCEEEEEeC
Q 014104 264 DQRVATLRST--------------DCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 264 ~~~~~~~~~~--------------~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
|+....+... ...-...++++|..+.|+..+.
T Consensus 205 G~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 205 GKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp -BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 9988766310 1235789999998776665543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.01 Score=59.85 Aligned_cols=194 Identities=10% Similarity=-0.022 Sum_probs=106.4
Q ss_pred ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
.+..+.|..++..++ +...|.|.+-|.++......+.....+...+|+++...++..+..+++.+-+ .+-.++....-
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E~~L 148 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAEKPL 148 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhcccc
Confidence 455566666776666 8999999999988877655555555567788888888887777777776644 23333322211
Q ss_pred C-----CCCeEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEE-----eCCCeEE
Q 014104 232 H-----CAPVTSLSLSEDQLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAG-----TTAGYAS 300 (430)
Q Consensus 232 ~-----~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~dg~i~ 300 (430)
+ .+....+-|-....=+-|+ .|.....+.... +...... ....=+.+.|--||+++++. .....|+
T Consensus 149 ~~d~~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~--~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 149 DADDERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIE--QDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred ccccccccccceecccccceeeecc-hhhhcccccccccccccchh--hccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 1 1122223332111111111 111111111000 0000011 12234568999999999873 2237899
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc---CCCeEEEEEcCCCceE
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG---IDGVLRVLDQNTGEVL 353 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~ 353 (430)
+||.. |.+-..-....+.-.+++ |-|.|..+++-. .|+.|.+|.-+ |-.-
T Consensus 226 V~drE-g~Lns~se~~~~l~~~Ls-WkPsgs~iA~iq~~~sd~~IvffErN-GL~h 278 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLS-WKPSGSLIAAIQCKTSDSDIVFFERN-GLRH 278 (1265)
T ss_pred Eeccc-chhhcccCccccccccee-ecCCCCeEeeeeecCCCCcEEEEecC-Cccc
Confidence 99987 433222222223334666 889999888754 55678888743 5433
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0056 Score=59.60 Aligned_cols=182 Identities=8% Similarity=0.004 Sum_probs=92.0
Q ss_pred ceEEEecC------CeEEEEECCCCeee--EEeecCCCCeEEEEecCCCEEEEEeCCC-----eEEEEeCCCCceeE--E
Q 014104 205 EAVVGCED------GTARVFDMYSRKCS--QIIRMHCAPVTSLSLSEDQLIISGSSLG-----SIAISGLSSDQRVA--T 269 (430)
Q Consensus 205 ~l~~~~~d------g~i~vwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~--~ 269 (430)
.+++|+.+ ..+..||..+++-. ..+...... .+++...+.+.+.|+.++ ++..||..+.+-.. .
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~-~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCR-FSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhc-eeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence 35666643 35778888776421 111111111 233333667777777653 48889988764322 1
Q ss_pred EecCCCCCeEEEEEecCCCEEEEEeCCC-----------------------eEEEEeCCCCcee--eeeecCCCceEEEE
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAGTTAG-----------------------YASCWDLRTMKSL--WETRISPNVVYSLQ 324 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~--~~~~~~~~~v~~l~ 324 (430)
+.. .......+.+ +|+..+.|+.++ .+..||..+.+-. ..+...... .+++
T Consensus 385 mp~-~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~ 460 (557)
T PHA02713 385 MPI-ALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV 460 (557)
T ss_pred CCc-ccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc-CcEE
Confidence 111 0111222222 677777777542 4777887765322 222111111 1122
Q ss_pred EeeCCCCeEEEEcCCC------eEEEEEcCC-CceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCC
Q 014104 325 HLQNDTSTLVVGGIDG------VLRVLDQNT-GEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP 397 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~ 397 (430)
.-+++..+.|+.++ .+..||..+ .+-...-. + .....
T Consensus 461 --~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---------------------------------m-~~~r~ 504 (557)
T PHA02713 461 --SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---------------------------------T-ESRLS 504 (557)
T ss_pred --EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---------------------------------c-Ccccc
Confidence 22466556666432 345566654 22111000 0 01122
Q ss_pred CeeEEEEcCeEEEEeeCCC--eEEEEEecCCC
Q 014104 398 PITCLAVGMKKVVTTHNSK--YIRLWKFNYSD 427 (430)
Q Consensus 398 ~v~~v~~~~~~l~t~~~Dg--~v~vw~~~~~~ 427 (430)
....+.++++..++||.|| ++-.||..+++
T Consensus 505 ~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 505 ALHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred cceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 4445666899999999998 77778877654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.032 Score=52.25 Aligned_cols=224 Identities=13% Similarity=0.052 Sum_probs=107.7
Q ss_pred EEEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc
Q 014104 105 IDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 183 (430)
++.+....-....+.+ |+|.++....||.-.|+.....+.... +......|...+++.+-...+.|.++.--..+
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence 3444445556788888 566555557788888888554444332 23445778886666556668889996332222
Q ss_pred ccccC-CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC
Q 014104 184 SVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 184 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~ 261 (430)
..... .+.....++. |..|...+ ++.|.+||.++++.+..+... +|..+.|+++ ++++..+. ..+.+++.
T Consensus 101 ~~k~i~~~~~~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~il~~ 172 (443)
T PF04053_consen 101 VVKSIKLPFSVEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK-DSIYILKY 172 (443)
T ss_dssp TT-----SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred cceEEcCCcccceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC-CeEEEEEe
Confidence 21111 1111111121 44455544 458999999999999998733 4899999976 67777664 46777665
Q ss_pred CCC-----------ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 262 SSD-----------QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 262 ~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
... .....+.. ....|.+..|..+ .++-.+.. .++- +..|+. ..+..-..+++=+. +.|..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E-~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllg-y~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHE-ISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLG-YLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEE-E-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEE-EETTT
T ss_pred cchhcccccccCchhceEEEEE-ecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEE-EEccC
Confidence 432 02222221 1347888888644 33333333 5655 333322 12222223444444 55655
Q ss_pred CeEEEEcCCCeEEEEEcC
Q 014104 331 STLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~ 348 (430)
+.+.....|+.|..+.+.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 667777777777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0024 Score=63.10 Aligned_cols=97 Identities=18% Similarity=0.130 Sum_probs=68.7
Q ss_pred eEEEecCCeEEEEECCCC--eeeEE-ee--cCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 206 AVVGCEDGTARVFDMYSR--KCSQI-IR--MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~--~~~~~-~~--~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.+.|-.+..+..||.+-. +++.. .+ .......|++-+.+.+||.|+.+|.|++||- .|....+.-.+...+|.+
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~ 623 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIG 623 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeE
Confidence 566777778888887743 22211 10 1334677888877789999999999999994 444444433336779999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeC
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
|..+.||+++++.+. ..+.+++.
T Consensus 624 iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 624 IDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEecCCCcEEEEeec-ceEEEEEE
Confidence 999999999887665 45777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.059 Score=50.37 Aligned_cols=185 Identities=14% Similarity=0.060 Sum_probs=100.2
Q ss_pred eEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC----CCCceeee--eEEEEcCCc
Q 014104 133 VMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS----REGTFMKG--LCMRYFDPE 205 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~----~~~~~~~~--~~~~~~~~~ 205 (430)
.|.||+.. |+.+..+.-. +.+..+.|+.+...++...+|.++++|+.+.. .+.. ....+... ......+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence 59999865 4566665543 56666888887777779999999999997555 1111 11111111 111222233
Q ss_pred eEEEecCCeEEEEECCCCe-eeEEeecCCC---------CeEE-EEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecC
Q 014104 206 AVVGCEDGTARVFDMYSRK-CSQIIRMHCA---------PVTS-LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRST 273 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~---------~i~~-~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 273 (430)
++.-..++.+.+.+-.... ..+.+..-.. .... ..++.+ ...+....++.+.+.+-...+. +.
T Consensus 140 ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-- 214 (410)
T PF04841_consen 140 IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-- 214 (410)
T ss_pred EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc--
Confidence 5555556666555322211 1111110000 0000 112211 2333334444555333222111 22
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-CCceEEEE
Q 014104 274 DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-PNVVYSLQ 324 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~v~~l~ 324 (430)
..+++..|++||+|+++|.-..+|.+.+.+..-.+.+.++... ......+.
T Consensus 215 ~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~ 266 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMA 266 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEE
Confidence 2358999999999999999999999999887766666665544 23455665
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00038 Score=64.80 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=72.3
Q ss_pred CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeE-EEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIK-TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
..|.-+.|+|. +++|.+..+|.|.+..+. -+.+.++.- +...++ +++|.|||+.|++|-.||+|++.|+.++..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 45778899987 899999999999999987 677788875 444566 99999999999999999999999999987765
Q ss_pred ee-ecCCCceEEEEEee
Q 014104 312 ET-RISPNVVYSLQHLQ 327 (430)
Q Consensus 312 ~~-~~~~~~v~~l~~~s 327 (430)
.. ..-...|.++- |+
T Consensus 99 ~~~~s~e~~is~~~-w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGI-WD 114 (665)
T ss_pred ccccccccchheee-cc
Confidence 52 12234555554 54
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.61 E-value=2e-05 Score=73.00 Aligned_cols=138 Identities=21% Similarity=0.314 Sum_probs=95.0
Q ss_pred eEEEecCCeEEEEECCCCee--eEEeecCCCCeEEEEecC-C-CEEEEEe----CCCeEEEEeCCCC--cee--EEEecC
Q 014104 206 AVVGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSE-D-QLIISGS----SLGSIAISGLSSD--QRV--ATLRST 273 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~-~-~~l~~~~----~dg~i~vwd~~~~--~~~--~~~~~~ 273 (430)
+++|..+|.|-+-..+...- -....++..+.++++|++ + +.+++|- .|..+.+||+.++ .+. ..|.+.
T Consensus 73 lavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~ 152 (783)
T KOG1008|consen 73 LAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS 152 (783)
T ss_pred hhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc
Confidence 78888999999887764321 234456778899999995 3 6777763 4568999999876 221 122221
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-eeeeeecCCCceEEEEEeeC-CCCeEEEEcCCCeEEEEEc
Q 014104 274 DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK-SLWETRISPNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~ 347 (430)
......+++|..+.+++.+|.....+.++|++... ....+ .+..+..+. ++| .+.++++.. ||.|-+||.
T Consensus 153 ~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~t-Vdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 153 TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGIT-VDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccce-ecCCCCCceeccc-cCceeeccc
Confidence 33356688898888999999999999999998421 11111 223445555 667 667777665 999999994
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.035 Score=47.32 Aligned_cols=147 Identities=12% Similarity=0.044 Sum_probs=97.8
Q ss_pred eEEEecCC--eEEEEECCCCeeeEEeecCC-CCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEE
Q 014104 206 AVVGCEDG--TARVFDMYSRKCSQIIRMHC-APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLC 282 (430)
Q Consensus 206 l~~~~~dg--~i~vwd~~~~~~~~~~~~~~-~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 282 (430)
+-+.+.-| .|+.+|+.+++......-.. --=-.++...+.+....-.++...+||..+.+.+.++.- .+.=..++
T Consensus 59 yESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y--~~EGWGLt 136 (264)
T PF05096_consen 59 YESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY--PGEGWGLT 136 (264)
T ss_dssp EEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE---SSS--EEE
T ss_pred EEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEec--CCcceEEE
Confidence 45555554 69999999998776654322 222455665666666777899999999999999998874 34445555
Q ss_pred EecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 283 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
.+++.|+.......++.+|..+.+...++.... ..++.+.+. +|...|-.=....|..-|..+|+.+..+.
T Consensus 137 --~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 137 --SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp --ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE
T ss_pred --cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEE
Confidence 377777777777789999998887776655432 346667733 56666666667788999999999988886
Q ss_pred e
Q 014104 358 M 358 (430)
Q Consensus 358 ~ 358 (430)
.
T Consensus 213 l 213 (264)
T PF05096_consen 213 L 213 (264)
T ss_dssp -
T ss_pred h
Confidence 4
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00069 Score=63.14 Aligned_cols=79 Identities=30% Similarity=0.373 Sum_probs=70.4
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE-EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEE
Q 014104 276 TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY-SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~-~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 354 (430)
..+.-+.|+|.-.++|++..+|.|.++.+. .+.+.++..|...++ +++ |.|||+.|+.|-.||+|++.|+.+|..+.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~-W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLC-WRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeee-ecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 368889999999999999999999999888 778888886766666 898 99999999999999999999999998887
Q ss_pred EE
Q 014104 355 RC 356 (430)
Q Consensus 355 ~~ 356 (430)
..
T Consensus 99 ~~ 100 (665)
T KOG4640|consen 99 SF 100 (665)
T ss_pred cc
Confidence 74
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00037 Score=39.81 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=33.1
Q ss_pred ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 308 KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 308 ~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+++..+..|...|.++. +.+++..+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVA-FSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEE-ECCCCCEEEEecCCCeEEEcC
Confidence 45566778888999999 888889999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.096 Score=48.54 Aligned_cols=236 Identities=12% Similarity=0.131 Sum_probs=143.6
Q ss_pred EEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcccccCCCC-ceeeeeEEEEcCCc-eEEE
Q 014104 134 MRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRSVFPSREG-TFMKGLCMRYFDPE-AVVG 209 (430)
Q Consensus 134 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~ 209 (430)
+.+++..+.+....+........+...+++..+. .. ....+...+............+ .......+...++. .++.
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~ 92 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT 92 (381)
T ss_pred eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec
Confidence 6677777766666666555666677888886655 22 2224444444422111111111 22223444445554 4555
Q ss_pred ecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC---CCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 210 CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS---LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 210 ~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
..++.|.+.|..+.+.......-. ....++++++ +.++.+.. ++++.+.|..+++....... ...+ ..++++|
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~v-G~~P-~~~a~~p 169 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPV-GNTP-TGVAVDP 169 (381)
T ss_pred CCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEec-CCCc-ceEEECC
Confidence 556899999988777776665322 4567888865 45555543 78999999999998888654 2223 8999999
Q ss_pred CCCEEEEEe-CCCeEEEEeCCCCceee-e----eecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceEEE-
Q 014104 286 CSRLVFAGT-TAGYASCWDLRTMKSLW-E----TRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVLSR- 355 (430)
Q Consensus 286 ~~~~l~~~~-~dg~i~i~d~~~~~~~~-~----~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~- 355 (430)
+|+.++... .++.|.+.|........ . .... ..-..+. ++|+|.++...... +.+...|..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~-v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIA-VDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEE-ECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 999776554 78899999987665542 1 1111 2334555 88999977655433 5899999988777665
Q ss_pred EEeccCcceeeeccCCceE
Q 014104 356 CVMDIGSASSSSNKVSGVI 374 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v 374 (430)
..........+...++|..
T Consensus 248 ~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 248 LPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred cccccCCCCceeECCCCCE
Confidence 2222212334445555543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00058 Score=38.92 Aligned_cols=38 Identities=16% Similarity=0.456 Sum_probs=32.3
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 303 (430)
+.+..+.. +...|.++.|+|++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKG-HTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEe-cCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556655 777999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00029 Score=57.39 Aligned_cols=142 Identities=14% Similarity=0.070 Sum_probs=82.9
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~ 324 (430)
.+...+.||.|.-++++..+.-..-...+.... ..-.-+..+++|+.+|.|++|.... +.....+......|-++.
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~---~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQ---RVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcce---eecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 455567788888888775432211111011121 1122346799999999999998763 222222222223343332
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV 404 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 404 (430)
....++.+..+++.||.|+.|++.-++.+.....|.. .++.....
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-----------------------------------~~~e~~iv 153 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-----------------------------------ESGEELIV 153 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccC-----------------------------------CCcceeEE
Confidence 1223445789999999999999987776665544331 12222222
Q ss_pred --cCeEEEEe--eCCCeEEEEEecC
Q 014104 405 --GMKKVVTT--HNSKYIRLWKFNY 425 (430)
Q Consensus 405 --~~~~l~t~--~~Dg~v~vw~~~~ 425 (430)
.++.++.+ |.|..++.|++..
T Consensus 154 v~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 154 VGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ecCCceEEeeccccchhhhhcchhh
Confidence 45667777 8888888888764
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00031 Score=57.20 Aligned_cols=140 Identities=15% Similarity=0.078 Sum_probs=79.8
Q ss_pred eEEEecCCeEEEEECCCCeee-EEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeEEEecCCCCCeEEEEE
Q 014104 206 AVVGCEDGTARVFDMYSRKCS-QIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGIKTLCY 283 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~ 283 (430)
+...+.+|.|.-++++..+.- +.-..+...-..+. -+..++.|+.+|.|.+|+..- +.....+..........+.-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~--~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT--ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecc--cCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 555667788887776543221 11111111111111 236789999999999998762 11111111111212222333
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEE--cCCCeEEEEEcC
Q 014104 284 NPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVG--GIDGVLRVLDQN 348 (430)
Q Consensus 284 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~--~~dg~i~vwd~~ 348 (430)
..++.+..+++.||.|+.|++..++.+.....|. .++..+. .+..+++++.+ |.|..++.|++.
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~i-vv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELI-VVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeE-EecCCceEEeeccccchhhhhcchh
Confidence 3445678899999999999999888877666665 4444444 44455555555 666666666665
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.032 Score=54.46 Aligned_cols=218 Identities=10% Similarity=0.047 Sum_probs=107.2
Q ss_pred eEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEE-EEeC------CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcC
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIG------TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFD 203 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~------~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~ 203 (430)
.+..||..+++....-..+... .......++..++ |+.+ ..+..||+.+..-. .................+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g 352 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDD 352 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECC
Confidence 5678888876543322222111 1122233555444 5532 34778888776421 111111111112223344
Q ss_pred CceEEEecCC-----eEEEEECCCCee--eEEeecCCCCeEEEEecCCCEEEEEeCC-----------------------
Q 014104 204 PEAVVGCEDG-----TARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSL----------------------- 253 (430)
Q Consensus 204 ~~l~~~~~dg-----~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~d----------------------- 253 (430)
...+.|+.++ ++..||..+.+- +..+....... +++...+.+.+.|+.+
T Consensus 353 ~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~-~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (557)
T PHA02713 353 TIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSY-GMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSS 431 (557)
T ss_pred EEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccc-cEEEECCEEEEEeCCCccccccccccccccccccccccc
Confidence 4466777653 488899876532 11222111111 2223356666667654
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC------CeEEEEeCCC-Cc--eeeeeecCCCceEEEE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA------GYASCWDLRT-MK--SLWETRISPNVVYSLQ 324 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~-~~--~~~~~~~~~~~v~~l~ 324 (430)
..+..||..+.+-...-.......-.+++ .-+|+..+.|+.+ ..+..||..+ .+ .+..+..........+
T Consensus 432 ~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 432 NKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred ceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 25778888776542211110111111222 2256766777654 2467899886 33 2333333222222222
Q ss_pred EeeCCCCeEEEEcCCC--eEEEEEcCCCceEEE
Q 014104 325 HLQNDTSTLVVGGIDG--VLRVLDQNTGEVLSR 355 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~ 355 (430)
-+|+..++|+.+| .+-.||..+.+-...
T Consensus 511 ---~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 511 ---HDNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred ---ECCEEEEEeeecceeehhhcCcccccccch
Confidence 3678888998888 777888876654433
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.027 Score=52.55 Aligned_cols=182 Identities=16% Similarity=0.068 Sum_probs=103.3
Q ss_pred ceeEEEEecCCCEEE-E---EeC-CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCe--EEEEECCCCe
Q 014104 153 AASLVDFDFDESKIV-G---LIG-TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGT--ARVFDMYSRK 224 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~---~~~-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~--i~vwd~~~~~ 224 (430)
....-.|++++..++ . ... ..+.++++++++.............-.+++++.. +++...||. |.+.|+.+++
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~ 273 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN 273 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc
Confidence 344467888888766 2 222 4599999998874333222222334667777777 555666665 5666887666
Q ss_pred eeEEeecCCCCeEEEEecCC-CEEEEE-eCCC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCe-
Q 014104 225 CSQIIRMHCAPVTSLSLSED-QLIISG-SSLG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AGY- 298 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~- 298 (430)
.. .+..-.+.-..=.|+|+ +.++-. +..| .|.+.|...+... .+.. ..+.-..-.++|+|++++..+. +|.
T Consensus 274 ~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~-riT~-~~~~~~~p~~SpdG~~i~~~~~~~g~~ 350 (425)
T COG0823 274 LP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT-RLTF-SGGGNSNPVWSPDGDKIVFESSSGGQW 350 (425)
T ss_pred ce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCcee-Eeec-cCCCCcCccCCCCCCEEEEEeccCCce
Confidence 33 34433333345567775 555544 4445 4677777665543 3322 2222226688999999886654 344
Q ss_pred -EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 299 -ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 299 -i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
|.+.|+.++..+..+. +......-. +.+++..++..+..
T Consensus 351 ~i~~~~~~~~~~~~~lt-~~~~~e~ps-~~~ng~~i~~~s~~ 390 (425)
T COG0823 351 DIDKNDLASGGKIRILT-STYLNESPS-WAPNGRMIMFSSGQ 390 (425)
T ss_pred eeEEeccCCCCcEEEcc-ccccCCCCC-cCCCCceEEEeccC
Confidence 7777776655433332 222222333 67788777655433
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.038 Score=51.58 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=97.1
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCe--EEEEEcCCCcccccCCCCceeeeeEEEEcCCceE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTR--ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV 207 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (430)
..+.++|+++++.............-+|+|||+.|+ ...++. |.+.|+.++..............-.+.+++..++
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~iv 297 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIV 297 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEE
Confidence 458899999887776666666667789999999988 444554 6667777766322222222233456777777755
Q ss_pred EE-ecCCe--EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-CCe--EEEEeCCCCceeEEEecCCCCCeEE
Q 014104 208 VG-CEDGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS-LGS--IAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 208 ~~-~~dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~-dg~--i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
-. +..|. |.++|.+.+.. ..+....+.-..-.|+|+ ++++..+. +|. |.+.|+.++...+.+. .......
T Consensus 298 f~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ 374 (425)
T COG0823 298 FTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNES 374 (425)
T ss_pred EEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCC
Confidence 44 44444 66667766554 333333333336677776 66665553 344 7777777666555554 2334445
Q ss_pred EEEecCCCEEEEEe
Q 014104 281 LCYNPCSRLVFAGT 294 (430)
Q Consensus 281 ~~~~~~~~~l~~~~ 294 (430)
-.+.|+|+.+...+
T Consensus 375 ps~~~ng~~i~~~s 388 (425)
T COG0823 375 PSWAPNGRMIMFSS 388 (425)
T ss_pred CCcCCCCceEEEec
Confidence 56777887666443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.15 Score=46.15 Aligned_cols=233 Identities=11% Similarity=0.017 Sum_probs=108.1
Q ss_pred CEeEEEEeccccceeEEEe------cCC--eEEEEeCCC--eEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EE
Q 014104 102 RIDIDQWKAHSVGVDQCRM------KRG--LILTGVGDK--VMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GL 169 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~------~~~--~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~ 169 (430)
+.++..|..+...-..+-| ++| +|+++..|| .+.+-|+.+++..+.-.+++. .....++++.+.++ ..
T Consensus 20 G~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~ 99 (386)
T PF14583_consen 20 GHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK 99 (386)
T ss_dssp --EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE
T ss_pred CceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE
Confidence 3455666555444443433 456 555565565 556668899888776665433 22467778888877 66
Q ss_pred eCCeEEEEEcCCCcc--cccCCCCceeeeeEEEEcC-CceEEEe-----------------------cCCeEEEEECCCC
Q 014104 170 IGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFD-PEAVVGC-----------------------EDGTARVFDMYSR 223 (430)
Q Consensus 170 ~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~-~~l~~~~-----------------------~dg~i~vwd~~~~ 223 (430)
....+...|+++.+. +......-. ....+..+. ...+++. ....|.-.|+.+|
T Consensus 100 ~~~~l~~vdL~T~e~~~vy~~p~~~~-g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG 178 (386)
T PF14583_consen 100 NGRSLRRVDLDTLEERVVYEVPDDWK-GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTG 178 (386)
T ss_dssp TTTEEEEEETTT--EEEEEE--TTEE-EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT-
T ss_pred CCCeEEEEECCcCcEEEEEECCcccc-cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCC
Confidence 677899999998764 333333332 222332222 2222221 1335566688887
Q ss_pred eeeEEeecCCCCeEEEEecCC--CEEEEEeC---CC-eEEEEeCCC-CceeEEEecC-CCCCeEEEEEecCCCEEEEE--
Q 014104 224 KCSQIIRMHCAPVTSLSLSED--QLIISGSS---LG-SIAISGLSS-DQRVATLRST-DCTGIKTLCYNPCSRLVFAG-- 293 (430)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~---dg-~i~vwd~~~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-- 293 (430)
+....+. ....+..+.++|. ..|+-|-+ +. .-+||-+++ +...+.+... ....+..=-|.|+|..+.--
T Consensus 179 ~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~ 257 (386)
T PF14583_consen 179 ERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSY 257 (386)
T ss_dssp -EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEE
T ss_pred ceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEee
Confidence 7654444 4567888999975 45555532 22 235665543 3333443321 12245555688999866632
Q ss_pred ---eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 294 ---TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 294 ---~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
+.+..|.-+|+.+++....... ....-+. .++||++++-=+.|
T Consensus 258 ~~~~~~~~i~~~d~~t~~~~~~~~~--p~~~H~~-ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 258 TPGGQDFWIAGYDPDTGERRRLMEM--PWCSHFM-SSPDGKLFVGDGGD 303 (386)
T ss_dssp ETTT--EEEEEE-TTT--EEEEEEE---SEEEEE-E-TTSSEEEEEE--
T ss_pred cCCCCceEEEeeCCCCCCceEEEeC--CceeeeE-EcCCCCEEEecCCC
Confidence 2244688888888765432222 1233443 57888877654443
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.14 Score=45.49 Aligned_cols=209 Identities=11% Similarity=0.023 Sum_probs=117.0
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc--cc-cCCCC---ceeeee
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS--VF-PSREG---TFMKGL 197 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~--~~-~~~~~---~~~~~~ 197 (430)
++.+--..+.|.-|+..+++. ..+..+........-..+..|+++.. .+.+++.+++.. .+ ....+ ......
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~-g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~ 116 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH-GVRLLDPDTGGKITLLAEPEDGLPLNRPNDG 116 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEcc-ccEEEeccCCceeEEeccccCCCCcCCCCce
Confidence 455556677888888876533 34444444444433334444443333 334444443322 11 11111 111112
Q ss_pred EEEEcCCceEEEecC------------CeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE-eCCCeEEEEeCCC
Q 014104 198 CMRYFDPEAVVGCED------------GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG-SSLGSIAISGLSS 263 (430)
Q Consensus 198 ~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg~i~vwd~~~ 263 (430)
.+.+.+. +..+... |.++.+|. .+..++.+..+-..-+.++|+|+ +.++.+ +..+.|.-|++..
T Consensus 117 ~v~pdG~-~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~ 194 (307)
T COG3386 117 VVDPDGR-IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDP 194 (307)
T ss_pred eEcCCCC-EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCc
Confidence 2222222 3333322 44555554 45566666555556678999987 455555 4457888887752
Q ss_pred --C----ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 264 --D----QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 264 --~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+ +....+.....+..-.++...+|.+.+++..+| .|.+|+.. ++++.++......+++++|-.|+.+.|+..
T Consensus 195 ~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iT 273 (307)
T COG3386 195 ATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYIT 273 (307)
T ss_pred ccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEE
Confidence 1 111122222445677888888998876555554 89999999 999998887767788888666766666554
Q ss_pred c
Q 014104 337 G 337 (430)
Q Consensus 337 ~ 337 (430)
+
T Consensus 274 s 274 (307)
T COG3386 274 S 274 (307)
T ss_pred e
Confidence 4
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.069 Score=52.12 Aligned_cols=222 Identities=13% Similarity=0.074 Sum_probs=115.6
Q ss_pred eEEEEeCC------CeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEEEEeC------CeEEEEEcCCCcccc-cC
Q 014104 124 LILTGVGD------KVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIG------TRICIWRRNGLRSVF-PS 188 (430)
Q Consensus 124 ~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~------~~i~vwd~~~~~~~~-~~ 188 (430)
.++.||.+ ..+..+|..+++.......+. ....+++..+.-+++|+.+ ..+..||..+.+-.. ..
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~ 366 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAP 366 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCC
Confidence 66777776 468889988875544333332 2222333333223336666 346778887766221 11
Q ss_pred CCCceeeeeEEEE-cCCceEEEecCCe-----EEEEECCCCee--eEEeecCCCCeEEEEecCCCEEEEEeCC------C
Q 014104 189 REGTFMKGLCMRY-FDPEAVVGCEDGT-----ARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSL------G 254 (430)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~l~~~~~dg~-----i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~d------g 254 (430)
..... ....+.. .+...++|+.||. +..||..+.+- +..+..... -.+++...+.+.++|+.+ .
T Consensus 367 M~~~R-~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~-~~gv~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 367 MNTKR-SDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS-GHGVAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred ccCcc-ccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCccee-eeEEEEECCEEEEEcCcCCCccccc
Confidence 11111 1233333 4444788888864 67788766542 211211111 122333356777777754 3
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCceeee--eecCCCceEEEEEee
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-----YASCWDLRTMKSLWE--TRISPNVVYSLQHLQ 327 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~s 327 (430)
++..||..+++-...-.......-..++.- ++...+.|+.|+ +|..||..+.+-... .......+... .
T Consensus 445 sve~YDP~t~~W~~~~~M~~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~---~ 520 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV---V 520 (571)
T ss_pred eEEEEcCCCCceeecCCcccccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE---E
Confidence 678889887665332221111111223332 677888888776 378899887654322 22222222222 2
Q ss_pred CCCCeEEEEcCCC-----eEEEEEcCCCc
Q 014104 328 NDTSTLVVGGIDG-----VLRVLDQNTGE 351 (430)
Q Consensus 328 ~~~~~l~s~~~dg-----~i~vwd~~~~~ 351 (430)
-++...++|+.|| +|-.||..+.+
T Consensus 521 ~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 521 LGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred ECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3567777888775 46666666543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00077 Score=64.96 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=85.3
Q ss_pred EEEecCC-CEEEEEe----CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee
Q 014104 238 SLSLSED-QLIISGS----SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
-..|+|. .+++.++ ..|+|-||- .+|++-+... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 3567775 5666664 457888875 5677655444 233577899999988899998899999999887776666
Q ss_pred eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 313 TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
...|..+|..+. ||++|..|+++..-|.|.+|...
T Consensus 97 ~~th~a~i~~l~-wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 97 VETHPAPIQGLD-WSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ccCCCCCceeEE-ecCCCCeEEEcCCCceeEEEEee
Confidence 778999999999 99999999999999999999765
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.038 Score=46.99 Aligned_cols=190 Identities=17% Similarity=0.150 Sum_probs=111.2
Q ss_pred EEEEecCC--CEEEEEeCCCe-EEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeC-----CCeEEEEeCCCC
Q 014104 237 TSLSLSED--QLIISGSSLGS-IAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTT-----AGYASCWDLRTM 307 (430)
Q Consensus 237 ~~~~~~~~--~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~ 307 (430)
..++++|. .-++.+-.-|+ ..++|....+...++...... -.-.=.|||||.+|+..-. .|.|-+||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 35666654 34555555554 568888877776665431111 1112368999999987643 377999999853
Q ss_pred -ceeeeeecCCCceEEEEEeeCCCCeEEEEcC------------------CCeEEEEEcCCCceEEEEEec----cCcce
Q 014104 308 -KSLWETRISPNVVYSLQHLQNDTSTLVVGGI------------------DGVLRVLDQNTGEVLSRCVMD----IGSAS 364 (430)
Q Consensus 308 -~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~------------------dg~i~vwd~~~~~~~~~~~~~----~~~~~ 364 (430)
+.+.++..|.-..-.+. +.+||+.|+.+.. .-++.+-|..+|.++...... ...+.
T Consensus 151 fqrvgE~~t~GiGpHev~-lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVT-LMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred cceecccccCCcCcceeE-EecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 55667777765566676 8899998877643 123455555566655444332 22445
Q ss_pred eeeccCCceEEEeeccccc------------CCcccccCCC------CCCCCeeEEEEc--CeE-EEEeeCCCeEEEEEe
Q 014104 365 SSSNKVSGVIERNEGRRLS------------AGCCIDRIPK------TIRPPITCLAVG--MKK-VVTTHNSKYIRLWKF 423 (430)
Q Consensus 365 ~~~~s~d~~v~~~~~~~~~------------~~~~~~~~~~------~h~~~v~~v~~~--~~~-l~t~~~Dg~v~vw~~ 423 (430)
-+.-..||++.....+.-+ .+..+..+.. .....|-+|+.+ ... .+|+-.-+..-+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 5667788888633222111 1111111111 112346677774 344 455556667889999
Q ss_pred cCCC
Q 014104 424 NYSD 427 (430)
Q Consensus 424 ~~~~ 427 (430)
++|+
T Consensus 310 ~tG~ 313 (366)
T COG3490 310 ATGA 313 (366)
T ss_pred CCCc
Confidence 9885
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.14 Score=43.82 Aligned_cols=195 Identities=11% Similarity=0.087 Sum_probs=110.7
Q ss_pred EEEEeccccceeEEEe-cC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCEEEEE-eCCeEEEEE
Q 014104 105 IDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIVGL-IGTRICIWR 178 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~~~i~vwd 178 (430)
.+.+.+-.+.+..++| ++ + ++++....+.|...+.+ |+.+..+... +....+++.-++.+++.. .++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3467777778999999 44 4 66667778888888864 7888887754 456668887777776655 378898888
Q ss_pred cCCCcc----------cccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCC---CeeeEEe--------ecCCCC
Q 014104 179 RNGLRS----------VFPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---RKCSQII--------RMHCAP 235 (430)
Q Consensus 179 ~~~~~~----------~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~--------~~~~~~ 235 (430)
+..... .+.. ........+++.+.+..++++-+.....++.+.. ...+... ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 843211 0111 1223356677777777788887777766776543 2111111 123346
Q ss_pred eEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC--------CCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 014104 236 VTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD--------CTGIKTLCYNPCSRLVFAGTTAGYASCW 302 (430)
Q Consensus 236 i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 302 (430)
+.+++++|. ++++....+..+..+| .+|+.+..+.-.. -.+.-.|+|+++|++.++ ++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 788999974 6777788889999999 6788766654311 136889999999975555 455555554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.002 Score=63.95 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=75.5
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEE
Q 014104 244 DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSL 323 (430)
Q Consensus 244 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l 323 (430)
+..++.|++.|.+...|....-.-..-.....++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+..++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 35688899999999999865311001111245699999999999999999999999999999999998888776555554
Q ss_pred EE--eeCCCCeEEEEcCCCeEEEEEcC
Q 014104 324 QH--LQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 324 ~~--~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
-+ +..++..++++...|. +|.+.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 31 3445567888877776 55543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.099 Score=51.03 Aligned_cols=214 Identities=13% Similarity=0.091 Sum_probs=111.0
Q ss_pred CeEEEEEcCCCccccc-CCCCceeeeeEEEEc-CCceEEEecC------CeEEEEECCCCeeeE--EeecCCCCeEEEEe
Q 014104 172 TRICIWRRNGLRSVFP-SREGTFMKGLCMRYF-DPEAVVGCED------GTARVFDMYSRKCSQ--IIRMHCAPVTSLSL 241 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~ 241 (430)
..+..+|..+++-... ....... ..+.... +...++|+.| .++..||..+++=.. .+...... ..++.
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~ 378 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRC-RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAV 378 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccc-cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEE
Confidence 4577788877642211 1111111 2333333 3347788888 457788887765221 11111111 23333
Q ss_pred cCCCEEEEEeCCC-----eEEEEeCCCCceeEEEecCCCCCeEEEEE-ecCCCEEEEEeCCC------eEEEEeCCCCce
Q 014104 242 SEDQLIISGSSLG-----SIAISGLSSDQRVATLRSTDCTGIKTLCY-NPCSRLVFAGTTAG------YASCWDLRTMKS 309 (430)
Q Consensus 242 ~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg------~i~i~d~~~~~~ 309 (430)
..+.+.++|+.|| ++..||..+.+--..-. .......... .-+|...++|+.++ ++..||..+++-
T Consensus 379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W 456 (571)
T KOG4441|consen 379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW 456 (571)
T ss_pred ECCEEEEEeccccccccccEEEecCCCCcccccCC--CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce
Confidence 3677888888886 57888887655322111 1111222211 12677777887554 578888887643
Q ss_pred ee--eeecCCCceEEEEEeeCCCCeEEEEcCCC-----eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 310 LW--ETRISPNVVYSLQHLQNDTSTLVVGGIDG-----VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 310 ~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
.. .+....... .++ .-++...+.||.|+ +|..||..+.+-...-.
T Consensus 457 ~~~~~M~~~R~~~-g~a--~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~------------------------- 508 (571)
T KOG4441|consen 457 TLIAPMNTRRSGF-GVA--VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP------------------------- 508 (571)
T ss_pred eecCCcccccccc-eEE--EECCEEEEECCccCCCccceEEEEcCCCCceeEccc-------------------------
Confidence 22 221111111 122 23677778888776 25556665443322210
Q ss_pred cCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCC-----eEEEEEecCC
Q 014104 383 SAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSK-----YIRLWKFNYS 426 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg-----~v~vw~~~~~ 426 (430)
.......+-.+..++...+.||.|| +|..||..++
T Consensus 509 ---------m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 509 ---------MTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ---------CccccccccEEEECCEEEEEecccCccccceeEEcCCCCC
Confidence 0112234455666788888888886 5666665554
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0033 Score=62.41 Aligned_cols=75 Identities=21% Similarity=0.197 Sum_probs=60.6
Q ss_pred CCCEEEEEeCCCeEEEEeCCCC-ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 286 CSRLVFAGTTAGYASCWDLRTM-KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 286 ~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.+..++.|+..|.+-..|+... .+...-..-.++|++++ |+.+|..++.|-.+|.|.+||+.+++.++.+..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsva-fn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVA-FNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeE-ecCCCceeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4567889999999999998753 22223333458999999 999999999999999999999999999998887655
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.01 Score=54.58 Aligned_cols=137 Identities=17% Similarity=0.209 Sum_probs=94.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCC--------EEEEEeCCeEEEEEcCCCcc-c---ccCCCC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDES--------KIVGLIGTRICIWRRNGLRS-V---FPSREG 191 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~i~vwd~~~~~~-~---~~~~~~ 191 (430)
.+.++.....++--|++.|+.+.+.+.+..+..+.+.|+.+ .|+|-.++.|.-||+.-... . ...++-
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 45556666677888999999999999887888888888654 47788999999999873221 1 111111
Q ss_pred -ceeeeeEEEEc-CCceEEEecCCeEEEEECCCCe-eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC
Q 014104 192 -TFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 192 -~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~ 262 (430)
......|+... +..+++|+.+|.|++||- .+. .-..+++-..+|..+..+.+ .+++ |+-+..+.+.|+.
T Consensus 428 ~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEEEe
Confidence 11122344433 445999999999999996 443 33456777889999999854 5544 4456777777754
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.014 Score=53.70 Aligned_cols=139 Identities=12% Similarity=0.120 Sum_probs=96.2
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--------CEEEEEeCCCeEEEEeCCCCce--eEEEec---
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--------QLIISGSSLGSIAISGLSSDQR--VATLRS--- 272 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--------~~l~~~~~dg~i~vwd~~~~~~--~~~~~~--- 272 (430)
+.++.....++-.|++.|+.+...+.+.. |+-+.+.|+ ..-+.|-.|..|.-||.+-... +...++
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 45566667788889999999998887766 666777653 1234566788999999883222 111111
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.......|.+-..+| ++++|+.+|.|++||--..+....+.+-..+|..+. .+.+|++|++.+ +..+.+-++.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVd-vtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVD-VTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEE-eeccCcEEEEec-ccEEEEEEEe
Confidence 012245666665554 789999999999999743333445677778999999 999999887665 5567776654
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00033 Score=65.29 Aligned_cols=176 Identities=16% Similarity=0.218 Sum_probs=103.5
Q ss_pred EEeCCeEEEEEcCCCccc-ccCCCCceeee--eEEEEcCCc-eEEEe----cCCeEEEEECCCC--eee--EEeec-CCC
Q 014104 168 GLIGTRICIWRRNGLRSV-FPSREGTFMKG--LCMRYFDPE-AVVGC----EDGTARVFDMYSR--KCS--QIIRM-HCA 234 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~~-~~~~~~~~~~~--~~~~~~~~~-l~~~~----~dg~i~vwd~~~~--~~~--~~~~~-~~~ 234 (430)
|..+|.|.+-.+....-. ....++....+ .+|...+.. |++|- .|..+.|||+.++ .+. ..+.+ ...
T Consensus 76 G~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~ 155 (783)
T KOG1008|consen 76 GSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLD 155 (783)
T ss_pred ccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccccccc
Confidence 777888888777654321 12222222222 333333323 45442 3567999999876 211 11221 223
Q ss_pred CeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEe-CCCC-ce
Q 014104 235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWD-LRTM-KS 309 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~-~~ 309 (430)
...+++|..+ .++++|.....+.++|++... ....+ ....+..+.++| .++++++- .||.|.+|| .++- .+
T Consensus 156 gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnienp 231 (783)
T KOG1008|consen 156 GQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIENP 231 (783)
T ss_pred CccccccccCcchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCceecc-ccCceeeccchhhhccH
Confidence 4557788755 688888888899999998322 22222 233577788888 66777665 499999999 4432 23
Q ss_pred eeeeecCC----CceEEEEEeeCCC-CeEEEEc-CCCeEEEEEcC
Q 014104 310 LWETRISP----NVVYSLQHLQNDT-STLVVGG-IDGVLRVLDQN 348 (430)
Q Consensus 310 ~~~~~~~~----~~v~~l~~~s~~~-~~l~s~~-~dg~i~vwd~~ 348 (430)
+..+.... ..+..++ +.|.. ..+++.+ ..++|+++|+.
T Consensus 232 l~~i~~~~N~~~~~l~~~a-ycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 232 LQIILRNENKKPKQLFALA-YCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HHHHhhCCCCcccceeeEE-eccCCcchhhhhccCcceEEEeccc
Confidence 33222222 3488888 66643 3556665 44789999886
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.17 Score=43.23 Aligned_cols=233 Identities=13% Similarity=0.082 Sum_probs=126.0
Q ss_pred ceeEEEe--cCC--eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCE-EE-EEeCCe-EEEEEcCCCcccc
Q 014104 114 GVDQCRM--KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESK-IV-GLIGTR-ICIWRRNGLRSVF 186 (430)
Q Consensus 114 ~v~~~~~--~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~-~~~~~~-i~vwd~~~~~~~~ 186 (430)
+|..-+| .+| .+++.+.+| +++.....+....-+.++|.-.. ++ +..-|+ ..++|.++.+...
T Consensus 36 avfasaf~~~dgs~g~a~~~eaG----------k~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv 105 (366)
T COG3490 36 AVFASAFDARDGSFGAATLSEAG----------KIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV 105 (366)
T ss_pred chheeeeeccCCceeEEEEccCC----------ceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE
Confidence 4444444 345 455555554 44444444444455667764433 33 445454 5678888766432
Q ss_pred cC---CCCceeeeeEEEEcCCceEEEec-----CCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeC----
Q 014104 187 PS---REGTFMKGLCMRYFDPEAVVGCE-----DGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSS---- 252 (430)
Q Consensus 187 ~~---~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~---- 252 (430)
.. ...|...--++++++..|+..-. .|.|-+||.+.+ +.+.++..|.-....+.+.++ ..++.+..
T Consensus 106 ~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIet 185 (366)
T COG3490 106 TLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIET 185 (366)
T ss_pred EEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceec
Confidence 21 22232222345555555554433 378999998754 456667777666677777765 55554421
Q ss_pred --------------CCeEEEEeCCCCceeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCe-----EEEEeCCCCcee
Q 014104 253 --------------LGSIAISGLSSDQRVATLRST---DCTGIKTLCYNPCSRLVFAGTTAGY-----ASCWDLRTMKSL 310 (430)
Q Consensus 253 --------------dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~ 310 (430)
.-++.+.|..+|+.+.+..-. +...|..++..+||..++.+-..|. --+=-...++++
T Consensus 186 hpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l 265 (366)
T COG3490 186 HPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPL 265 (366)
T ss_pred ccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcC
Confidence 123455565666665544321 2337888888888876665533331 111111223333
Q ss_pred eeeecC-------CCceEEEEEeeCCCCeE-EEEcCCCeEEEEEcCCCceEEEEE
Q 014104 311 WETRIS-------PNVVYSLQHLQNDTSTL-VVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 311 ~~~~~~-------~~~v~~l~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
.-+... ...|-+++ .+-+..++ +|+-..+...+||..+|..+..-.
T Consensus 266 ~~~~~pee~~~~~anYigsiA-~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 266 EFLDLPEEQTAAFANYIGSIA-ANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred cccCCCHHHHHHHHhhhhhee-ecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 322211 23456666 54444444 455466778899999998876544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.34 Score=45.63 Aligned_cols=233 Identities=14% Similarity=0.116 Sum_probs=122.2
Q ss_pred EEe-cCC-eEE-EEeCCC----eEEEEecCCCeeEEee-ecCCceeEEEEecCCCEEE-EEeC-----------CeEEEE
Q 014104 118 CRM-KRG-LIL-TGVGDK----VMRLWSLEGYKCVEEY-SLPNAASLVDFDFDESKIV-GLIG-----------TRICIW 177 (430)
Q Consensus 118 ~~~-~~~-~l~-s~~~dg----~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~-----------~~i~vw 177 (430)
..+ +++ ++| +-+..| .+++.|+.+++.+... .... ...+.|.++++.++ ...+ ..|..|
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 344 456 444 434444 5999999999877533 3222 22399999999887 4433 237888
Q ss_pred EcCCCc----ccccCCCCce-eeeeEEEEcCCceEE-Eec--C-CeEEEEECCCC----eeeEEeecCCCCe-EEEEecC
Q 014104 178 RRNGLR----SVFPSREGTF-MKGLCMRYFDPEAVV-GCE--D-GTARVFDMYSR----KCSQIIRMHCAPV-TSLSLSE 243 (430)
Q Consensus 178 d~~~~~----~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~--d-g~i~vwd~~~~----~~~~~~~~~~~~i-~~~~~~~ 243 (430)
++.+.. .++....... ...+..+.++..++. ... + ..+.+.|+..+ .....+......+ ..+....
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~ 287 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHG 287 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEET
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccC
Confidence 887764 2444444443 333444555555443 322 2 45888888764 2333443333333 4444444
Q ss_pred CCEEEEEe---CCCeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEEE-EeCCC--eEEEEeCCCCceeeeee
Q 014104 244 DQLIISGS---SLGSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVFA-GTTAG--YASCWDLRTMKSLWETR 314 (430)
Q Consensus 244 ~~~l~~~~---~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~i~d~~~~~~~~~~~ 314 (430)
+.+++... ..+.|...++.+... ...+.. +...+.-..+...+++|+. ...++ .|+++++..+.....+.
T Consensus 288 ~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~ 366 (414)
T PF02897_consen 288 DRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIP-EDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIP 366 (414)
T ss_dssp TEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEE
T ss_pred CEEEEeeCCCCCCcEEEEecccccccccceeEEcC-CCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeec
Confidence 44444332 346788888887653 223332 4443333333444555554 44444 58889998333333333
Q ss_pred c-CCCceEEEEEeeCCCCeE-EEEc---CCCeEEEEEcCCCceE
Q 014104 315 I-SPNVVYSLQHLQNDTSTL-VVGG---IDGVLRVLDQNTGEVL 353 (430)
Q Consensus 315 ~-~~~~v~~l~~~s~~~~~l-~s~~---~dg~i~vwd~~~~~~~ 353 (430)
. ..+.|..+. ..+++..+ ++.+ .-+++..||+.+++..
T Consensus 367 ~p~~g~v~~~~-~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 367 LPEAGSVSGVS-GDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp SSSSSEEEEEE-S-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CCcceEEeccC-CCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 2 235566655 55655533 2222 3468899999988754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.3 Score=44.26 Aligned_cols=215 Identities=13% Similarity=0.049 Sum_probs=104.3
Q ss_pred ecCCCeeEEeeecCCce------eEEEEecCCCEEE-EEe-C--CeEEEEEcCCCcccccCC-CCceeeeeEEEEcCCce
Q 014104 138 SLEGYKCVEEYSLPNAA------SLVDFDFDESKIV-GLI-G--TRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 138 d~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~-~~~-~--~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 206 (430)
|..||..+..+..+... .--+|..+|+.|+ ++. + ..+.+.|+++++...... .+......++++.+..+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 56677666655543221 1256788998887 433 4 457888888887543222 22222235555666556
Q ss_pred EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec--CCCEEEEEeC-----------------------CCeEEEEeC
Q 014104 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS--EDQLIISGSS-----------------------LGSIAISGL 261 (430)
Q Consensus 207 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~--~~~~l~~~~~-----------------------dg~i~vwd~ 261 (430)
+-......++-.|+++.+....+......+-...|. .+...+.+.. ...|.-.|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 555555688889999987766666556655445554 2322232211 235666788
Q ss_pred CCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCC-CceeeeeecCC-CceEEEEEeeCCCCeEE
Q 014104 262 SSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-----YASCWDLRT-MKSLWETRISP-NVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~-~~~~~~~~~~~-~~v~~l~~~s~~~~~l~ 334 (430)
.+|+....+. ....+..+.|+|....+++=+..| .-+||-+++ +.....+..+. ..+..=.+|.|||..|.
T Consensus 176 ~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 8888766665 455788999999877666655443 135665543 33333332222 33444447999998664
Q ss_pred EE-----cCCCeEEEEEcCCCceEE
Q 014104 335 VG-----GIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 335 s~-----~~dg~i~vwd~~~~~~~~ 354 (430)
-- +.+..|.-+|+.+++...
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEE
T ss_pred EEeecCCCCceEEEeeCCCCCCceE
Confidence 32 235567788888876543
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.35 Score=44.79 Aligned_cols=198 Identities=14% Similarity=0.068 Sum_probs=118.2
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCC---ceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCc-ee
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT-FM 194 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~~ 194 (430)
...++.++.+..||.|.-.|.++++.+....... ....-.+..+|+.++++.++.+..+|..+++..+...... ..
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 3356788888899999999999988765444332 1122222237887779999989999998777655443333 11
Q ss_pred eeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC---CeEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeEE
Q 014104 195 KGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA---PVTSLSLSEDQLIISGSS--LGSIAISGLSSDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~---~i~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~ 269 (430)
..-........+..++.+|.+...|..+|+.......... .+..-....+..++.+.. ++.+.-.|..+|+....
T Consensus 145 ~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 145 YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCcEeee
Confidence 1111111222255555789999999998988777553221 111000012345666665 66788889888888777
Q ss_pred EecCCCCCeEE---EEEecC-----CCEEEEEeCCCeEEEEeCCCCceeeeeecC
Q 014104 270 LRSTDCTGIKT---LCYNPC-----SRLVFAGTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 270 ~~~~~~~~v~~---~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
.+..+...-.. ...-.. +.-++.++.++.+...|..+++.+.+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 43211111110 101111 123356677888999999999999887764
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.22 Score=42.76 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=75.0
Q ss_pred EeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 228 IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
.+.+-...+..++|+|+ .++++....+.|...+. +|+.++++.-...+....+++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 44455567999999975 46777778889998996 5888888875344578899998777777766668999999884
Q ss_pred CCc------eeeeee-----cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 306 TMK------SLWETR-----ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 306 ~~~------~~~~~~-----~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
... ....+. .+...+-+++ ++|.++.|+.+-...-..+|.+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla-~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLA-YDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEE-EETTTTEEEEEEESSSEEEEEEE
T ss_pred ccccccchhhceEEecccccCCCcceEEEE-EcCCCCEEEEEeCCCChhhEEEc
Confidence 321 111111 2335678888 99988888777766666666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00067 Score=60.50 Aligned_cols=51 Identities=22% Similarity=0.328 Sum_probs=45.0
Q ss_pred CCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHH
Q 014104 19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYC 69 (430)
Q Consensus 19 ~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~ 69 (430)
.....-..||+|+.+++|+|||...|++++++|+.|+..+.|..-|+..-.
T Consensus 67 ~~~~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL 117 (483)
T KOG4341|consen 67 DNNSISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDL 117 (483)
T ss_pred hcccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeeh
Confidence 455566789999999999999999999999999999999999999966533
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.7 Score=46.43 Aligned_cols=228 Identities=12% Similarity=0.097 Sum_probs=118.6
Q ss_pred CeEEEEeCCCeEEEE--ecCCCeeEEe---eecCCceeEEEEecCCCE-EEEEeCCeEEEEEcCCCcccccCCCCceeee
Q 014104 123 GLILTGVGDKVMRLW--SLEGYKCVEE---YSLPNAASLVDFDFDESK-IVGLIGTRICIWRRNGLRSVFPSREGTFMKG 196 (430)
Q Consensus 123 ~~l~s~~~dg~i~iw--d~~~~~~~~~---~~~~~~~~~~~~~~~~~~-l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~ 196 (430)
++|.++..||.+.-+ |..+++.-.. .-+..++..-.|+..++. +++.+|.-..+|..+..-......-.....+
T Consensus 596 ~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~ 675 (1096)
T KOG1897|consen 596 HYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHM 675 (1096)
T ss_pred eEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhh
Confidence 399999999998766 4455543322 223344455666665544 4477777777766554332111111111111
Q ss_pred eEEEE-cCCc-eEEEecCCeEEEEECCCCee--eEEeecCCCCeEEEEecCC-CEEEEEeC-----------C---CeEE
Q 014104 197 LCMRY-FDPE-AVVGCEDGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSED-QLIISGSS-----------L---GSIA 257 (430)
Q Consensus 197 ~~~~~-~~~~-l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~-~~l~~~~~-----------d---g~i~ 257 (430)
+.+.. ..++ ++++. .+.+.+.-+..-+. ++++.. ......+++.+. ..+.+.+. . ..++
T Consensus 676 c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~ 753 (1096)
T KOG1897|consen 676 CPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPL-GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLR 753 (1096)
T ss_pred cccccccCCceEEEec-CCceEEEEecchhhcceeeecC-CCChhheEecccceEEEEEecccccchhhcCCcceEEEEE
Confidence 11111 1122 44444 44566665543222 233322 233455555542 22222221 1 2467
Q ss_pred EEeCCCCceeEEEecCCCC---CeEEEEEecC-CCEEEEEe----------CCCeEEEEeCCCCceeeeeecC--CCceE
Q 014104 258 ISGLSSDQRVATLRSTDCT---GIKTLCYNPC-SRLVFAGT----------TAGYASCWDLRTMKSLWETRIS--PNVVY 321 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~--~~~v~ 321 (430)
++|-.+-+.+...+-.... .+.++.|..| +.++++|+ ..|.|.+|....++.+.....+ .+.+.
T Consensus 754 vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~ 833 (1096)
T KOG1897|consen 754 VLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVY 833 (1096)
T ss_pred EecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecccee
Confidence 7777766655444321222 4555668877 66777775 2477888887764444333322 36777
Q ss_pred EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 322 SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
++..| +|++||.- ...|++|+..+.+.++.-
T Consensus 834 aL~~f--ngkllA~I--n~~vrLye~t~~~eLr~e 864 (1096)
T KOG1897|consen 834 ALVEF--NGKLLAGI--NQSVRLYEWTTERELRIE 864 (1096)
T ss_pred ehhhh--CCeEEEec--CcEEEEEEccccceehhh
Confidence 77633 67766644 568999999877555443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.27 Score=40.78 Aligned_cols=85 Identities=13% Similarity=0.160 Sum_probs=55.3
Q ss_pred CeEEEEEecCCCEEE-EEeCCCeEEEEe--CCCCce-----eeeeecC----CCceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 277 GIKTLCYNPCSRLVF-AGTTAGYASCWD--LRTMKS-----LWETRIS----PNVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~-~~~~dg~i~i~d--~~~~~~-----~~~~~~~----~~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
--..++|+.+.+.+. +-+.+-.|.-|| ..+|.. +..++.. ....-.++ +..+|.+.++.-..++|..
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~-ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMT-IDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcce-EccCCcEEEEEecCcEEEE
Confidence 345678887776555 555667787777 555533 2222221 11122333 5567787777778899999
Q ss_pred EEcCCCceEEEEEeccCc
Q 014104 345 LDQNTGEVLSRCVMDIGS 362 (430)
Q Consensus 345 wd~~~~~~~~~~~~~~~~ 362 (430)
.|..+|+.+.++......
T Consensus 238 ~dp~tGK~L~eiklPt~q 255 (310)
T KOG4499|consen 238 VDPTTGKILLEIKLPTPQ 255 (310)
T ss_pred ECCCCCcEEEEEEcCCCc
Confidence 999999999999876553
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0061 Score=36.77 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=30.5
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee
Q 014104 275 CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
...|.+++|+|...++|.|+.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 447999999999999999999999999998 45543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.14 Score=50.13 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=61.0
Q ss_pred CCeEEEEecCC-CEEEEEe------CCC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC--------
Q 014104 234 APVTSLSLSED-QLIISGS------SLG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-------- 296 (430)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~------~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------- 296 (430)
..+.+.+++|+ +.++... .|. .+.+++.. +.. ..+.. ....+.-.|+|+|..+++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~--g~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE--GHSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec--CCCCCCceECCCCCceEEEecCcceEEEec
Confidence 45678888876 5444433 233 56666642 333 33332 2247778999998877766432
Q ss_pred ----CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEE
Q 014104 297 ----GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRV 344 (430)
Q Consensus 297 ----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~v 344 (430)
+.+.+.++..++... ...+.|..+. +||||..++... +|.|++
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~-wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQ-LSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEE-ECCCCCEEEEEE-CCEEEE
Confidence 233333444333322 2245799999 999999887765 467776
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.23 Score=40.36 Aligned_cols=174 Identities=12% Similarity=0.041 Sum_probs=104.7
Q ss_pred EEEecCC-eEEEEeC--CCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEE--EEEeCCeEEEEEcCCCccccc-CC
Q 014104 117 QCRMKRG-LILTGVG--DKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKI--VGLIGTRICIWRRNGLRSVFP-SR 189 (430)
Q Consensus 117 ~~~~~~~-~l~s~~~--dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l--~~~~~~~i~vwd~~~~~~~~~-~~ 189 (430)
.+.+.+| ++.+.+. ...|++||+.+++.+..-... .....-.+..-++.+ +.-.+|....+|.++.+.+-. ..
T Consensus 50 GL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 50 GLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred ceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 4566677 6666554 347999999999988766544 222222222333443 377888889999887664322 12
Q ss_pred CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC--C---CCeEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--C---APVTSLSLSEDQLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~---~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 264 (430)
++. ...+..++..++.+....+++.-|.++-....++... . ..++-+.|-++...+-.-.+..|...|..+|
T Consensus 130 ~Ge---GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sG 206 (262)
T COG3823 130 EGE---GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSG 206 (262)
T ss_pred CCc---ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCC
Confidence 222 3556667777887777778888887765544333211 1 2334556655655555556666777777777
Q ss_pred ceeEEEec-----------CCCCCeEEEEEecCCC-EEEEE
Q 014104 265 QRVATLRS-----------TDCTGIKTLCYNPCSR-LVFAG 293 (430)
Q Consensus 265 ~~~~~~~~-----------~~~~~v~~~~~~~~~~-~l~~~ 293 (430)
+.+..+.. .+..-...+++.|++. ++++|
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 77655432 1333567788888874 44444
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.57 Score=43.42 Aligned_cols=42 Identities=17% Similarity=-0.007 Sum_probs=35.0
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.+.++. .+|++++.++...-|.|.++|+.++..++.+++-.+
T Consensus 309 ~~~~i~-~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 309 EGESIC-LSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eEEEEE-ECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 366777 899999888887789999999999999988886433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.26 Score=47.80 Aligned_cols=182 Identities=12% Similarity=0.080 Sum_probs=101.5
Q ss_pred CCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccc--cCCCCceeeeeEEEEcCCce
Q 014104 130 GDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPEA 206 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 206 (430)
.-..|+|+++.. +.+..+. .+.....+.|+.+...|+...+|++.+|++-+...-. .+.+.....+.....++..+
T Consensus 62 a~~~I~If~~sG-~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 62 ARPYIRIFNISG-QLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred cceeEEEEeccc-cchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 345788998654 5555444 3446666888888888889999999999987765333 11222222334444455556
Q ss_pred EEEecCCeEEEEECCCCeeeEEeec---CCCCeEEEEec-CC--CEEEEEeCCCe--EEEEeCCCC-ceeEEEecCCCCC
Q 014104 207 VVGCEDGTARVFDMYSRKCSQIIRM---HCAPVTSLSLS-ED--QLIISGSSLGS--IAISGLSSD-QRVATLRSTDCTG 277 (430)
Q Consensus 207 ~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~~~~~-~~--~~l~~~~~dg~--i~vwd~~~~-~~~~~~~~~~~~~ 277 (430)
++-..+|.+.+-+-.....+..++. ..-+-.|-... |+ ..++. ..+-. ..+...... .....+.. ....
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll-~v~~~v~~~~~q~~~~~~q~~~~~~-~~~~ 218 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILL-DVDVAVGLHICQVEESRVQLHALSW-PNSS 218 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEE-eechhhhhcccceecccccccccCC-CCce
Confidence 6666777776654322222333322 11111222222 22 11111 11100 011111111 11122222 2246
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
+..+.+||++++|+--...|.|.+-+....+.+.++.
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 8889999999999999999999999888777766655
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.33 Score=47.50 Aligned_cols=93 Identities=9% Similarity=0.104 Sum_probs=46.7
Q ss_pred eEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeEEEecCCCCCeEEEEEecC
Q 014104 214 TARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSSL-----GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC 286 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 286 (430)
.+..||..+++-... +...... .+++...+.+++.|+.+ ..+..||..+++-...-.......-.+++ .-+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~-~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~ 389 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKN-PGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVN 389 (534)
T ss_pred cEEEEeCCCCeeeECCCCCccccc-ceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EEC
Confidence 577888877653221 1111111 12233356677777755 35778888766533211110111111222 235
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCc
Q 014104 287 SRLVFAGTTA------GYASCWDLRTMK 308 (430)
Q Consensus 287 ~~~l~~~~~d------g~i~i~d~~~~~ 308 (430)
++..+.|+.+ ..+..||..+++
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 6666777632 358889987653
|
|
| >KOG3926 consensus F-box proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0045 Score=51.61 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=50.0
Q ss_pred CCCCCCCccCCcHHHHHHHhcCC-ChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 17 SSKPRATIESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 17 ~~~~~~~~~~Lp~e~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
+....-++..||.|+.+.|+-.| |.+||..++++-.....++++..+|+.||+-++
T Consensus 195 ~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF 251 (332)
T KOG3926|consen 195 PDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHF 251 (332)
T ss_pred CCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 33356688899999999999888 999999999999999999999999999998775
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.34 Score=44.44 Aligned_cols=188 Identities=12% Similarity=0.049 Sum_probs=84.2
Q ss_pred CCCEEE--EEeCCeEEEEEcCCCcc---cccCCCC-------c--eeeeeEEEEcCCceEEEe--c----CCeEEEEECC
Q 014104 162 DESKIV--GLIGTRICIWRRNGLRS---VFPSREG-------T--FMKGLCMRYFDPEAVVGC--E----DGTARVFDMY 221 (430)
Q Consensus 162 ~~~~l~--~~~~~~i~vwd~~~~~~---~~~~~~~-------~--~~~~~~~~~~~~~l~~~~--~----dg~i~vwd~~ 221 (430)
+.++|+ +-.++.|.++|+.+... +.+..+. . ........+.+..++++- . -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345565 55789999999984321 1111111 0 001111222333455432 2 2567788877
Q ss_pred CCeeeEEeecCC---CCeEEEEecCC-CEEEEEeC--------------------CCeEEEEeCCCCceeEEEecCCCC-
Q 014104 222 SRKCSQIIRMHC---APVTSLSLSED-QLIISGSS--------------------LGSIAISGLSSDQRVATLRSTDCT- 276 (430)
Q Consensus 222 ~~~~~~~~~~~~---~~i~~~~~~~~-~~l~~~~~--------------------dg~i~vwd~~~~~~~~~~~~~~~~- 276 (430)
+.+.....+... ..-..+.+.|. +.++|... ..++.+||+.+.+.++++.-..++
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 776665554322 23355666665 66666542 358999999999999999864333
Q ss_pred CeEEEEEe--cCCCEEEEEe-CCCeEEEEeC-CCCc----eeeeeec-----------------CCCceEEEEEeeCCCC
Q 014104 277 GIKTLCYN--PCSRLVFAGT-TAGYASCWDL-RTMK----SLWETRI-----------------SPNVVYSLQHLQNDTS 331 (430)
Q Consensus 277 ~v~~~~~~--~~~~~l~~~~-~dg~i~i~d~-~~~~----~~~~~~~-----------------~~~~v~~l~~~s~~~~ 331 (430)
.+..+.|. |+..+=++|+ -.++|..|-- ..++ .+.++.. -..-|+.+. +|.|.+
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~-iSlDDr 324 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDIL-ISLDDR 324 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EE-E-TTS-
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEE-EccCCC
Confidence 45677775 4444444333 2334444433 3332 1111111 124578888 999999
Q ss_pred eEEEEc-CCCeEEEEEcCCC
Q 014104 332 TLVVGG-IDGVLRVLDQNTG 350 (430)
Q Consensus 332 ~l~s~~-~dg~i~vwd~~~~ 350 (430)
+|..+. ..|.|+.||+...
T Consensus 325 fLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEETTTTEEEEEE-SST
T ss_pred EEEEEcccCCcEEEEecCCC
Confidence 997766 7899999999864
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.48 Score=46.35 Aligned_cols=184 Identities=10% Similarity=0.017 Sum_probs=86.2
Q ss_pred CCeEEEEeCCC------eEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeC-----CeEEEEEcCCCcccccC
Q 014104 122 RGLILTGVGDK------VMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIG-----TRICIWRRNGLRSVFPS 188 (430)
Q Consensus 122 ~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~-----~~i~vwd~~~~~~~~~~ 188 (430)
+..++.||.++ .+..||..+.+....-..+.. ........++..++ |+.+ ..+..||..+.+-....
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 374 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEP 374 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCC
Confidence 33566666542 567888877665332222211 11122233555544 5543 34777888766522111
Q ss_pred -CCCceeeeeEEEEcCCceEEEecC------CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCC------
Q 014104 189 -REGTFMKGLCMRYFDPEAVVGCED------GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSL------ 253 (430)
Q Consensus 189 -~~~~~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~d------ 253 (430)
..............+...+.|+.+ ..+..||+.+++-.. .+..... -.++....+.+++.|+.+
T Consensus 375 ~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 375 PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-GGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-CceEEEECCEEEEECCccCCCCCc
Confidence 111111111222233335556532 468889987654221 1111111 112333355666666543
Q ss_pred --CeEEEEeCCCCceeEEEecCCC-CCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCc
Q 014104 254 --GSIAISGLSSDQRVATLRSTDC-TGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMK 308 (430)
Q Consensus 254 --g~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 308 (430)
..+.+||..+++-...-..... .....+.+ +++.++.|+.+ ..+.+||..+.+
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899887654322111011 11122222 66677777654 457788877653
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=1 Score=41.68 Aligned_cols=199 Identities=16% Similarity=0.126 Sum_probs=118.6
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCCcccccCCCCc---eeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-
Q 014104 159 FDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT---FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA- 234 (430)
Q Consensus 159 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~- 234 (430)
..-++..+++..+|.+.-.|.+++..++...... ....-.+. .+..++.++.+|.++.+|..+|+.+........
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~-~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILG-SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEE-eCCeEEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 4446666667888888888888887554332221 11111111 234489999999999999989999888876551
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCC--CCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCcee
Q 014104 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTD--CTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSL 310 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~ 310 (430)
.+..-....+..+..++.++.+...|..+|+......... ...+..--.. ....++.+.. ++.+.-+|..+|+..
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEe
Confidence 1111111123556666678999999999999887765321 1111111111 2234555555 667888888888877
Q ss_pred eeeecCC----CceEEEEEeeC----CCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 311 WETRISP----NVVYSLQHLQN----DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 311 ~~~~~~~----~~v~~l~~~s~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
...+.+. ..+.....+.. .+.-+..++.++.+...|..+|+.+..+...
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 6643221 11100110100 1123356677888999999999999888874
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.59 Score=40.35 Aligned_cols=118 Identities=11% Similarity=0.081 Sum_probs=84.6
Q ss_pred ecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 230 RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
.+-...+.++.|+|+ +.+.+......-.|+=..+|+.+++++-..-.....+.+..+|++.++--.++.++++.+..+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344556999999987 6777777667666776678999999875444466778888888888887788889888776542
Q ss_pred eeeee-------e--cC-CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 309 SLWET-------R--IS-PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 309 ~~~~~-------~--~~-~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+... . .+ ....-+++ ++|..+.|..+-+-.-+.||.+.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA-~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLA-WDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeee-cCCCCceEEEEEccCCcEEEEEe
Confidence 22111 1 11 34566788 99999988888877777777765
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.2 Score=41.44 Aligned_cols=137 Identities=14% Similarity=0.173 Sum_probs=82.5
Q ss_pred eEEEEeCCCeEEEEecCCCe-----eEEeeecCCceeEEEEe---c--CCCEEEEEeCCeEEEEEcCCCc----------
Q 014104 124 LILTGVGDKVMRLWSLEGYK-----CVEEYSLPNAASLVDFD---F--DESKIVGLIGTRICIWRRNGLR---------- 183 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~---~--~~~~l~~~~~~~i~vwd~~~~~---------- 183 (430)
.+++||..|.++||+..... .+-+.+...++..+..- + +...|+.-.-..+.+|.+....
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~ 118 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQ 118 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEE
Confidence 99999999999999986533 33333334444433332 2 3345667788888888873211
Q ss_pred --ccccCCCCceeeeeEEEEcCC-----ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 184 --SVFPSREGTFMKGLCMRYFDP-----EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 184 --~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
..+..+-.....-++.-+++. .+++-+.||.+.+++-+.-.....+.. .--...+.+.+. +.|++++.+..
T Consensus 119 L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~ 197 (418)
T PF14727_consen 119 LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASSSWT 197 (418)
T ss_pred EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecCcee
Confidence 011111222223344445443 288899999999999765443333332 112234566654 78888888888
Q ss_pred EEEEeC
Q 014104 256 IAISGL 261 (430)
Q Consensus 256 i~vwd~ 261 (430)
+.-|..
T Consensus 198 l~~Yky 203 (418)
T PF14727_consen 198 LECYKY 203 (418)
T ss_pred EEEecH
Confidence 888864
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.03 E-value=2 Score=43.43 Aligned_cols=230 Identities=13% Similarity=0.038 Sum_probs=123.2
Q ss_pred cceeEEEe--cC--C--eEEEEeC---CCeEEEEecCCC-eeEEeeecCC--ceeEEE--Eec--CCCEEEEEeCCeEEE
Q 014104 113 VGVDQCRM--KR--G--LILTGVG---DKVMRLWSLEGY-KCVEEYSLPN--AASLVD--FDF--DESKIVGLIGTRICI 176 (430)
Q Consensus 113 ~~v~~~~~--~~--~--~l~s~~~---dg~i~iwd~~~~-~~~~~~~~~~--~~~~~~--~~~--~~~~l~~~~~~~i~v 176 (430)
++|..++. .+ + .++|++. ||++|+....-+ ..+...+.++ +...+. +++ |. +++-+.-+.-++
T Consensus 354 gPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~-ylvlsf~~eTrv 432 (1096)
T KOG1897|consen 354 GPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDN-YLVLSFISETRV 432 (1096)
T ss_pred cceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCc-EEEEEeccceEE
Confidence 47777766 22 2 6777653 899999864432 3344444443 333333 222 33 666666666666
Q ss_pred EEcCCCcc--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec-CCCEEEEEeCC
Q 014104 177 WRRNGLRS--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS-EDQLIISGSSL 253 (430)
Q Consensus 177 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~-~~~~l~~~~~d 253 (430)
..+...-. ..........+..+-...++.++=... ..|++++-. ........ .+.++..+.+ +...++.++.+
T Consensus 433 l~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~ 508 (1096)
T KOG1897|consen 433 LNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGG 508 (1096)
T ss_pred EEEccceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCc
Confidence 66654421 111111222233333334444333333 357777643 23333332 2334444444 44677778878
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC------CEEEEEeCCCeEEEEeC-CCCceeeee--ecC--CCceEE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS------RLVFAGTTAGYASCWDL-RTMKSLWET--RIS--PNVVYS 322 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~i~d~-~~~~~~~~~--~~~--~~~v~~ 322 (430)
+.+...++..+.............|.|+.++|-| ++++.|..+..+.+.-. .+...+... .+. +..|.-
T Consensus 509 ~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~ 588 (1096)
T KOG1897|consen 509 LALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILL 588 (1096)
T ss_pred cEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheee
Confidence 8888888876663333332245689999999753 37888887776555433 223222211 111 122333
Q ss_pred EEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 323 LQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 323 l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.. +-.|..+|.++..||.+..|-+.
T Consensus 589 ~~-~e~d~~yLlvalgdG~l~~fv~d 613 (1096)
T KOG1897|consen 589 TT-FEGDIHYLLVALGDGALLYFVLD 613 (1096)
T ss_pred EE-eeccceEEEEEcCCceEEEEEEE
Confidence 33 55567899999999998766443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.73 Score=38.35 Aligned_cols=100 Identities=16% Similarity=0.103 Sum_probs=65.6
Q ss_pred eEEEEecCC--CEEEEEeCCCeEEEEe--CCCCc-----eeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 236 VTSLSLSED--QLIISGSSLGSIAISG--LSSDQ-----RVATLRST---DCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 236 i~~~~~~~~--~~l~~~~~dg~i~vwd--~~~~~-----~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 303 (430)
-+.++|+.+ .+.++-+.+-+|.-|| ..+|. .+..++.. .....-.++...+|++.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 355667633 3445556666776676 44443 23333320 111334566677889888888899999999
Q ss_pred CCCCceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 304 LRTMKSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
..+|+.+.++......|++.+|-.++-..+++
T Consensus 240 p~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 99999999999888999999844444444443
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.92 Score=43.60 Aligned_cols=179 Identities=9% Similarity=-0.083 Sum_probs=86.6
Q ss_pred eEEEecC-----CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCC--CeEEEEeCCCCceeEEEecCCCC
Q 014104 206 AVVGCED-----GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSL--GSIAISGLSSDQRVATLRSTDCT 276 (430)
Q Consensus 206 l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~ 276 (430)
+++|+.+ .++..||..+++-.. .+...... .+++...+.+.+.|+.+ ..+..||..+++-...-.-....
T Consensus 275 yviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r 353 (480)
T PHA02790 275 YLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPR 353 (480)
T ss_pred EEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCC
Confidence 5666644 357778887764322 12111111 12233355666777653 46888887765432211110111
Q ss_pred -CeEEEEEecCCCEEEEEeCCC---eEEEEeCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 277 -GIKTLCYNPCSRLVFAGTTAG---YASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 277 -~v~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
....+. -+|+..+.|+.++ .+..||.++++-.. .+....... ++ ..-+++..+.|+ .+.+||..++
T Consensus 354 ~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~--~~~~~~IYv~GG---~~e~ydp~~~ 425 (480)
T PHA02790 354 CNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA--LVFGRRLFLVGR---NAEFYCESSN 425 (480)
T ss_pred cccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE--EEECCEEEEECC---ceEEecCCCC
Confidence 112222 2677777777553 47788887653221 111111111 12 123455555553 4566776544
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCC-----CeEEEEEecC
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNS-----KYIRLWKFNY 425 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~D-----g~v~vw~~~~ 425 (430)
+-... .. ++. .+.....+.++++..+.||.+ .+|..||..+
T Consensus 426 ~W~~~-~~--------------------------------m~~-~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 426 TWTLI-DD--------------------------------PIY-PRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cEeEc-CC--------------------------------CCC-CccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 32211 00 000 112233455688888888865 3577888776
Q ss_pred CC
Q 014104 426 SD 427 (430)
Q Consensus 426 ~~ 427 (430)
++
T Consensus 472 ~~ 473 (480)
T PHA02790 472 YS 473 (480)
T ss_pred Ce
Confidence 54
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.6 Score=41.13 Aligned_cols=199 Identities=13% Similarity=0.055 Sum_probs=103.2
Q ss_pred EEEEecCCCEEE-E-EeCCe----EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-----------CCeEEEE
Q 014104 156 LVDFDFDESKIV-G-LIGTR----ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-----------DGTARVF 218 (430)
Q Consensus 156 ~~~~~~~~~~l~-~-~~~~~----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------dg~i~vw 218 (430)
...++|++++++ + +..|. ++++|+++++.+...........+.|..++..++.... ...|+.|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 467899999998 3 34443 99999999975433222222222566656555544432 2347888
Q ss_pred ECCCCee--eEEeecCCCC--eEEEEecCC-CEEEE-EeC--C-CeEEEEeCCCC----ceeEEEecCCCCCeEEEEEec
Q 014104 219 DMYSRKC--SQIIRMHCAP--VTSLSLSED-QLIIS-GSS--L-GSIAISGLSSD----QRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 219 d~~~~~~--~~~~~~~~~~--i~~~~~~~~-~~l~~-~~~--d-g~i~vwd~~~~----~~~~~~~~~~~~~v~~~~~~~ 285 (430)
.+.+... ...+...... ...+..+++ ++++. ... + ..+.+.|+..+ .....+.. ....+....-+.
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~ 286 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHH 286 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEE
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEcc
Confidence 8877643 2444443333 567777765 55443 322 2 45888888874 23333333 233343333333
Q ss_pred CCCEEEEEe---CCCeEEEEeCCCCce---eeeeecCCC--ceEEEEEeeCCCCeE-EEEcCCC--eEEEEEcCCCceEE
Q 014104 286 CSRLVFAGT---TAGYASCWDLRTMKS---LWETRISPN--VVYSLQHLQNDTSTL-VVGGIDG--VLRVLDQNTGEVLS 354 (430)
Q Consensus 286 ~~~~l~~~~---~dg~i~i~d~~~~~~---~~~~~~~~~--~v~~l~~~s~~~~~l-~s~~~dg--~i~vwd~~~~~~~~ 354 (430)
.+.+++... .++.|...++.+... ...+..+.. .+..+. ..+.+| +..-.++ .|+++++..+....
T Consensus 287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~---~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVS---LFKDYLVLSYRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEE---EETTEEEEEEEETTEEEEEEEETT-TEEEE
T ss_pred CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEE---EECCEEEEEEEECCccEEEEEECCCCcEEe
Confidence 444444432 346777778876542 224444444 344444 334444 4444443 57888988455555
Q ss_pred EEEe
Q 014104 355 RCVM 358 (430)
Q Consensus 355 ~~~~ 358 (430)
.+..
T Consensus 364 ~~~~ 367 (414)
T PF02897_consen 364 EIPL 367 (414)
T ss_dssp EEES
T ss_pred eecC
Confidence 5544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.2 Score=41.94 Aligned_cols=181 Identities=13% Similarity=0.070 Sum_probs=91.5
Q ss_pred ceeEEEEecCCCEEE-EE------eCC--eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec------------
Q 014104 153 AASLVDFDFDESKIV-GL------IGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE------------ 211 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~------~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------ 211 (430)
.+...+++++|+.++ .. .+. .+.+++..+....+ ..+.....-.|++++..+++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~l--t~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQV--LEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceee--ecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 455688999999988 33 133 45555543322211 11222334556666555444432
Q ss_pred CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEE---EeCCCCce-e---EEEecCCCCCeEEEEE
Q 014104 212 DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI---SGLSSDQR-V---ATLRSTDCTGIKTLCY 283 (430)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~v---wd~~~~~~-~---~~~~~~~~~~v~~~~~ 283 (430)
.+.+.+.++..++... ...+.|..+.|+|+ ..++... ++.|.+ -....|.. + ..+.......+..+.|
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 2344444554443322 23567999999976 5554443 477776 44344431 1 1122213334688999
Q ss_pred ecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecC--CCceEEEEEeeCCCCeEEEEcCCCeEE
Q 014104 284 NPCSRLVFAGTTAGYASCWDLRT-MKSLWETRIS--PNVVYSLQHLQNDTSTLVVGGIDGVLR 343 (430)
Q Consensus 284 ~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~--~~~v~~l~~~s~~~~~l~s~~~dg~i~ 343 (430)
.+++.++ ++..++...+|.+.- |.....+... ...+..++ -++ ..++....+|.+.
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~va-a~~--~~iyv~~~~g~~~ 563 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVA-ASP--STVYVTDARAVLQ 563 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEe-cCC--ceEEEEcCCceEE
Confidence 9988855 555544444454332 2221111221 34555665 333 2344555555333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.77 Score=44.79 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=40.2
Q ss_pred eEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 214 TARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~ 262 (430)
.|+|+++ +|+.+..+.-..+.+-.+.|+.+..+++...+|++.+|++.
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLL 112 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecc
Confidence 5888887 67777766655668889999988889999999999999975
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.76 Score=34.70 Aligned_cols=106 Identities=5% Similarity=-0.021 Sum_probs=70.9
Q ss_pred eEEEEeCCCeEEEEecCCC--------eeEEeeecCCceeEEEEec-----CCCEEEEEeCCeEEEEEcCCCcccccCCC
Q 014104 124 LILTGVGDKVMRLWSLEGY--------KCVEEYSLPNAASLVDFDF-----DESKIVGLIGTRICIWRRNGLRSVFPSRE 190 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~i~vwd~~~~~~~~~~~~ 190 (430)
.|+.++.-|+|.|++.... ..+..+.....+.+++--+ +.+.|+.++...+..||+.....++...-
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~ 91 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEV 91 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhC
Confidence 7888888899999987632 3455666666676665443 34567788999999999999887766554
Q ss_pred CceeeeeEEEEcCC---ceEEEecCCeEEEEECCCCeeeEEe
Q 014104 191 GTFMKGLCMRYFDP---EAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 191 ~~~~~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
......+.+...+. .++..+.+..|.-+|.+..+..++.
T Consensus 92 ~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 92 PDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 44444444443332 2666666678888887655555544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.059 Score=32.52 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.6
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
..|..+. |+|...+||.++.+|.|.++.+ +++.+
T Consensus 12 ~~v~~~~-w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 12 SRVSCMS-WCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CcEEEEE-ECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 5688888 9999999999999999999998 56544
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.2 Score=36.38 Aligned_cols=190 Identities=9% Similarity=0.061 Sum_probs=98.8
Q ss_pred eEEeeecCCceeEEEEecCCCEEE-EE---eCCeEEEEEcCCCcccccCCCC-ceeeeeEEEEcCCc-eEEEecCCeEEE
Q 014104 144 CVEEYSLPNAASLVDFDFDESKIV-GL---IGTRICIWRRNGLRSVFPSREG-TFMKGLCMRYFDPE-AVVGCEDGTARV 217 (430)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~-l~~~~~dg~i~v 217 (430)
.++++.+......-.+..++..++ ++ ....|++||+.+++..+...-. .....-.+...+.. ..-.-.+|.-..
T Consensus 36 vi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~ 115 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFK 115 (262)
T ss_pred EEEeccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEE
Confidence 444444433333333333334554 22 2456999999988765443322 11111122223333 233456788888
Q ss_pred EECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEE----ecCCCCCeEEEEEecCCCEEEEE
Q 014104 218 FDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL----RSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 218 wd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
+|..+-+++..+. ..+.=+.++....+ ++.+....++..-|.++-....++ .+..-..+..+.|- +|...|-.
T Consensus 116 ~d~~t~~~lg~~~-y~GeGWgLt~d~~~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANV 192 (262)
T COG3823 116 YDADTLEELGRFS-YEGEGWGLTSDDKN-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANV 192 (262)
T ss_pred EChHHhhhhcccc-cCCcceeeecCCcc-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEee
Confidence 9998888877765 34555666664334 555555566777776654333322 22111123334443 55554443
Q ss_pred eCCCeEEEEeCCCCceeeeee------------cCCCceEEEEEeeCCC-CeEEEEc
Q 014104 294 TTAGYASCWDLRTMKSLWETR------------ISPNVVYSLQHLQNDT-STLVVGG 337 (430)
Q Consensus 294 ~~dg~i~i~d~~~~~~~~~~~------------~~~~~v~~l~~~s~~~-~~l~s~~ 337 (430)
=.+..|...|..+|+.+..+. .|.+..+.++ +.|++ +++++|-
T Consensus 193 w~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA-~~~~~~r~~iTGK 248 (262)
T COG3823 193 WQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIA-HDPQQDRFLITGK 248 (262)
T ss_pred eeecceEEEcCCCCcEEEEEEccCCchhcCcccccccccccee-ecCcCCeEEEecC
Confidence 344446666666666554332 2345677888 66666 5666653
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.2 Score=39.94 Aligned_cols=181 Identities=11% Similarity=-0.017 Sum_probs=83.8
Q ss_pred cCC-eEEEEeCCC-----eEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEE-EEeC--CeEEEEEcCCCcccc-cCC
Q 014104 121 KRG-LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLIG--TRICIWRRNGLRSVF-PSR 189 (430)
Q Consensus 121 ~~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~~--~~i~vwd~~~~~~~~-~~~ 189 (430)
.++ .++.||.++ ++..||..+++....-..+... .......++...+ |+.+ ..+..||..+.+-.. ...
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 344 566676543 5677888776544322222111 1122234555544 5443 457788876654211 111
Q ss_pred CCceeeeeEEEEcCCceEEEecC---CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 190 EGTFMKGLCMRYFDPEAVVGCED---GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD 264 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 264 (430)
.............+...+.|+.+ ..+..||..+.+=.. .+...... .+++...+.+.+.| |.+.+||.+++
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~~~~~~IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCALVFGRRLFLVG---RNAEFYCESSN 425 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEEEECCEEEEEC---CceEEecCCCC
Confidence 11111112223334445666654 346788877653221 11111111 12333345555555 35778998876
Q ss_pred ceeEEEecCCC-CCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCC
Q 014104 265 QRVATLRSTDC-TGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTM 307 (430)
Q Consensus 265 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~ 307 (430)
+-...-..... .....+.+ +|+..++|+.+ ..+..||..++
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 54322111111 12222222 66777777754 24556665543
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.54 Score=43.58 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=62.7
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEE-EEeeCC----------------CCe-EEEE
Q 014104 275 CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSL-QHLQND----------------TST-LVVG 336 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l-~~~s~~----------------~~~-l~s~ 336 (430)
...+.+++.+|++++.++...-|.|.++|+.++..++.+++..+.-..- ....+. ..+ ++-+
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya 386 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA 386 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence 3468899999999999998888999999999998888777765432221 101111 112 3345
Q ss_pred cCCCeEEEEEcCCCceEEEEEeccC
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
-.-|.|-||.+++|..+..+....+
T Consensus 387 prRg~lEvW~~~~g~Rv~a~~v~k~ 411 (415)
T PF14655_consen 387 PRRGILEVWSMRQGPRVAAFNVGKG 411 (415)
T ss_pred ccCCeEEEEecCCCCEEEEEEeCCC
Confidence 5789999999999999999886544
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.0038 Score=56.79 Aligned_cols=135 Identities=12% Similarity=0.163 Sum_probs=96.8
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMR 200 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~ 200 (430)
-++.++.+-.+..||-. ++.+.....+.....+++..++..++ +-..+.+.+||+++... .+.....+......++
T Consensus 48 nlavaca~tiv~~YD~a-gq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~ws 126 (615)
T KOG2247|consen 48 NLAVACANTIVIYYDKA-GQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWS 126 (615)
T ss_pred ceehhhhhhHHHhhhhh-cceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhc
Confidence 67777888888899844 45555555555666688888888766 77889999999987653 2232223333345566
Q ss_pred EcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEE
Q 014104 201 YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (430)
Q Consensus 201 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vw 259 (430)
...+.++.+...|.+.+++..+.+.+...-.|...++++++.+.++.+.++.|..+.+-
T Consensus 127 Kg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 127 KGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT 185 (615)
T ss_pred cCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence 66666888888999999998877766566558889999999987778877776655443
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.045 Score=53.81 Aligned_cols=115 Identities=11% Similarity=0.171 Sum_probs=67.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
+..+-.+++|++.+..+.. ...+.+|...+..+++....++...+ ++|
T Consensus 198 ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSp 245 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSP 245 (1283)
T ss_pred eeeccCCCceeEeeechHH-HHHHHhcCCCcccHHHHhhchhhhee-------------------------------eCC
Confidence 5556667777776654332 24555677777777765433322222 578
Q ss_pred CCCEEEEEeCCCeEEEEeC-----CCCceeeeeecCC-CceEEEEEeeCCC---------CeEEEEc-CCCeEEEEEcCC
Q 014104 286 CSRLVFAGTTAGYASCWDL-----RTMKSLWETRISP-NVVYSLQHLQNDT---------STLVVGG-IDGVLRVLDQNT 349 (430)
Q Consensus 286 ~~~~l~~~~~dg~i~i~d~-----~~~~~~~~~~~~~-~~v~~l~~~s~~~---------~~l~s~~-~dg~i~vwd~~~ 349 (430)
||..++.++.||.++.|.+ ....++...+.|. .+-.|.. +..+. .++++++ .+..+++|....
T Consensus 246 DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 246 DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 8888888888887666654 3344555666665 2322322 22111 2445555 345689998877
Q ss_pred CceE
Q 014104 350 GEVL 353 (430)
Q Consensus 350 ~~~~ 353 (430)
.+|+
T Consensus 325 w~Cl 328 (1283)
T KOG1916|consen 325 WQCL 328 (1283)
T ss_pred hhhh
Confidence 6665
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.42 E-value=3.6 Score=40.81 Aligned_cols=102 Identities=12% Similarity=0.143 Sum_probs=66.7
Q ss_pred CCEEEEEeCCCeEEEEeCCC-------C-------------ceeEEEecCCCCCeEEEEEe--cCCCEEEEEeCCCeEEE
Q 014104 244 DQLIISGSSLGSIAISGLSS-------D-------------QRVATLRSTDCTGIKTLCYN--PCSRLVFAGTTAGYASC 301 (430)
Q Consensus 244 ~~~l~~~~~dg~i~vwd~~~-------~-------------~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i 301 (430)
.+.|+.|.+||.|.+|.+++ . ++...+. ......+++++ ...+++|+++....|.|
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~--v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR--VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee--cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 36888888899999996521 0 1122222 34478899998 77889999988888888
Q ss_pred EeCCCC--ceee-eeecCCCceEEEEEeeCC----CC-eEEEEcCCCeEEEEEc
Q 014104 302 WDLRTM--KSLW-ETRISPNVVYSLQHLQND----TS-TLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 302 ~d~~~~--~~~~-~~~~~~~~v~~l~~~s~~----~~-~l~s~~~dg~i~vwd~ 347 (430)
|-.... +... .-..+...|.++.|+..+ |. .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765432 1111 111244668888844322 32 7888889999998887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.46 Score=40.08 Aligned_cols=69 Identities=14% Similarity=0.091 Sum_probs=48.0
Q ss_pred ceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEee---------------ecCCceeEEEEecCCCEEEEEeCCeEEEEE
Q 014104 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEY---------------SLPNAASLVDFDFDESKIVGLIGTRICIWR 178 (430)
Q Consensus 114 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd 178 (430)
++..+...+.+|++-..+|.+++||+.+++.+..- .....+..+.++.+|.-++.-.+|..+.|+
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 34445556669999999999999999998765432 112334556777778777777777888887
Q ss_pred cCCC
Q 014104 179 RNGL 182 (430)
Q Consensus 179 ~~~~ 182 (430)
.+-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 6543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.3 Score=40.61 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=66.1
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe--cCCCEEEEEeCCCeEEEEeCC-----C----Cceeeee
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN--PCSRLVFAGTTAGYASCWDLR-----T----MKSLWET 313 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~-----~----~~~~~~~ 313 (430)
...++-+....+.|||.+.+.....-.-...+.|.++.|. |+|+.+.+.+-...|.+|.-. + ..++.++
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 3333344455799999998876544332246789999986 688888888888889988532 1 1233332
Q ss_pred --ecCC-CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 314 --RISP-NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 314 --~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
..++ .+|.+.. |-++|..++.+ ++.+.|+|-.
T Consensus 122 ~i~~~T~h~Igds~-Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 122 DISSHTPHPIGDSI-WLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred EeecCCCCCcccee-EecCCeEEEEe--CCEEEEECCC
Confidence 2333 5677887 77888766544 3578888754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.9 Score=32.65 Aligned_cols=108 Identities=16% Similarity=0.195 Sum_probs=69.1
Q ss_pred CEEEEEeCCCeEEEEeCCCC--------ceeEEEecCCCCCeEEEEEec-----CCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 245 QLIISGSSLGSIAISGLSSD--------QRVATLRSTDCTGIKTLCYNP-----CSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
..|++++.-|+|.|++.... ..+..+. ....|++++-.| ....|+.|+.. .+..||+.....+.
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~F 87 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDLF 87 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchhh
Confidence 47888888899999987633 3445555 456788887655 34577777665 59999999877665
Q ss_pred eeecCCCceEEEEE--eeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 312 ETRISPNVVYSLQH--LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 312 ~~~~~~~~v~~l~~--~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.-+.+ +.|.++.+ +.....-++..+.+..|.=||.+-.+...+.
T Consensus 88 yke~~-DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 88 YKEVP-DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred hhhCc-cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 43333 56777661 2221233444445778888887654544443
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.08 E-value=4.7 Score=37.00 Aligned_cols=222 Identities=10% Similarity=0.004 Sum_probs=113.1
Q ss_pred ccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee-c-----------------CCceeEEEEecCCCEEE-E-E
Q 014104 112 SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-L-----------------PNAASLVDFDFDESKIV-G-L 169 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~-----------------~~~~~~~~~~~~~~~l~-~-~ 169 (430)
...+....+ |+| .++-. .++.|.+++..+++..+.-. + -.....+-|+||+++|+ . .
T Consensus 42 ~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 455666677 566 55544 46899999987775443211 2 11234588999999987 3 3
Q ss_pred eCCeE-----------------------------------EEEEcCCCccc-cc-----CCCCceeeeeEEEEcCCceEE
Q 014104 170 IGTRI-----------------------------------CIWRRNGLRSV-FP-----SREGTFMKGLCMRYFDPEAVV 208 (430)
Q Consensus 170 ~~~~i-----------------------------------~vwd~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~l~~ 208 (430)
.+..| .++|+++++.. +. .........+.|..++..++.
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 23332 23444333321 00 112233344555555553332
Q ss_pred E--ecC---CeEEEEECCCCeeeEEeec-CCCCe---EEEEec-C-C-CEEEEEeCCC--eEEEEeCCCCceeEEEecCC
Q 014104 209 G--CED---GTARVFDMYSRKCSQIIRM-HCAPV---TSLSLS-E-D-QLIISGSSLG--SIAISGLSSDQRVATLRSTD 274 (430)
Q Consensus 209 ~--~~d---g~i~vwd~~~~~~~~~~~~-~~~~i---~~~~~~-~-~-~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~ 274 (430)
. ..+ ..+.+.|..++++...+.. ..+.| ....+. + + .++.....+| .|.+.+...+. ...+.. .
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~-G 278 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTS-G 278 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS--S
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecccc-C
Confidence 2 222 2355667766654333321 22222 234443 3 3 4555555777 46666666554 334443 3
Q ss_pred CCCeEE-EEEecCCCEEE-EEeCC----CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 275 CTGIKT-LCYNPCSRLVF-AGTTA----GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 275 ~~~v~~-~~~~~~~~~l~-~~~~d----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
.-.|.. +.++++++.++ ++..+ ..++.-++..+..+..+....+.-..+. |||++++++-..
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~-~Spdg~y~v~~~ 346 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSAS-FSPDGKYYVDTY 346 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEE-E-TTSSEEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEE-ECCCCCEEEEEE
Confidence 446644 67788877655 55542 3566667773334445554433335777 999999876543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.98 Score=42.06 Aligned_cols=137 Identities=13% Similarity=0.168 Sum_probs=88.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecC--------CCEEEEEeCCeEEEEEcCCCc--ccc---cCCC
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFD--------ESKIVGLIGTRICIWRRNGLR--SVF---PSRE 190 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~i~vwd~~~~~--~~~---~~~~ 190 (430)
.+..|+.-..+.--|++-|+.+.....+..+ ++.+.|. .+.|+|-++..|.-.|..-.. ... ....
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 3444555566667788889999988887666 7777774 345788888888888865322 111 1111
Q ss_pred CceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCC
Q 014104 191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLS 262 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~ 262 (430)
........+...+.++++|+..|.|++||.-.-..-..+++....|-.+..+. +.++++.+ ...+.+-|++
T Consensus 561 tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 561 TKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 11111233334556699999999999999644444445566677888888884 45555444 4677777764
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.24 Score=28.96 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.4
Q ss_pred CeEEEEEecCC---CEEEEEeCCCeEEEEeCCC
Q 014104 277 GIKTLCYNPCS---RLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 277 ~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~ 306 (430)
.+.++.|+|.. .+|+.+-.-|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 68899999754 4888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.97 E-value=5.5 Score=37.39 Aligned_cols=137 Identities=9% Similarity=0.015 Sum_probs=89.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--------CEEEEEeCCCeEEEEeCCC-CceeEEEecCCCC
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--------QLIISGSSLGSIAISGLSS-DQRVATLRSTDCT 276 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--------~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~ 276 (430)
+..|+....++-.|++.|+.+.....|... -+.|.|. ..-+.|-.+..|.-.|.+- |..+.... ...
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e--sKd 558 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE--SKD 558 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee--ehh
Confidence 445666667888899999999888877654 4666652 2334555666676667763 32222222 111
Q ss_pred CeEEEEEe----cCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 277 GIKTLCYN----PCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 277 ~v~~~~~~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.++--.|+ ....++++++..|-|++||--.-+....+.+-...|..+. .+.+|+++++.+. ..+.+-|++
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~id-vta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHID-VTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeE-eecCCcEEEEeec-ceEEEEecc
Confidence 22222222 2345899999999999999764444445666667888888 8899998877664 567777775
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.13 Score=50.78 Aligned_cols=147 Identities=11% Similarity=0.059 Sum_probs=85.1
Q ss_pred CCeEEEEECCCCee-eEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCC--CCce----eEEEecCCCCCeEEEE
Q 014104 212 DGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLS--SDQR----VATLRSTDCTGIKTLC 282 (430)
Q Consensus 212 dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~--~~~~----~~~~~~~~~~~v~~~~ 282 (430)
.+.+++-+..+.-. -..+++..+.+-.+.|... ..+. -.-|.+.|||+. .|+. .-+........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 34566666543221 1234556677777777522 1222 334678888875 3333 2222222333445555
Q ss_pred Eec---CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE----------EeeCCCCeEEEEcCCCeEEEEEcC-
Q 014104 283 YNP---CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ----------HLQNDTSTLVVGGIDGVLRVLDQN- 348 (430)
Q Consensus 283 ~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~----------~~s~~~~~l~s~~~dg~i~vwd~~- 348 (430)
|.| +..++..+-.++.|++.+...... .-+++|...+..++ -.||||..+++++.||.+++|.+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee
Confidence 554 556777888888888877654322 33455665544443 368999999999999998888653
Q ss_pred ----CCceEEEEEeccC
Q 014104 349 ----TGEVLSRCVMDIG 361 (430)
Q Consensus 349 ----~~~~~~~~~~~~~ 361 (430)
.-.++..++.|++
T Consensus 267 ~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred eccccHhhhhccCCCCC
Confidence 2344555555553
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.76 Score=46.99 Aligned_cols=125 Identities=14% Similarity=0.064 Sum_probs=78.5
Q ss_pred EEEecCCeEEEEECCCCee-----eEEeec------CCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCc-eeEEEec
Q 014104 207 VVGCEDGTARVFDMYSRKC-----SQIIRM------HCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQ-RVATLRS 272 (430)
Q Consensus 207 ~~~~~dg~i~vwd~~~~~~-----~~~~~~------~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~-~~~~~~~ 272 (430)
+..+.+-.|..||+++-.. ...+.. ......++.|+|. ...+....|+.|++.-+.... .+..+.
T Consensus 118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p- 196 (1405)
T KOG3630|consen 118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP- 196 (1405)
T ss_pred EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-
Confidence 3334445688999875321 111111 1234567888875 456777889999988775322 233333
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC----CCceEEEEEeeCCCCeEEE
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS----PNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~v~~l~~~s~~~~~l~s 335 (430)
.....++++|+|.|+.+++|-..|++.-|-.. ++...++.+. ...|.++.|+.+ ..++++
T Consensus 197 -~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t-~eflvv 260 (1405)
T KOG3630|consen 197 -VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST-QEFLVV 260 (1405)
T ss_pred -cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc-eeEEEE
Confidence 55689999999999999999999999988765 3322222211 367888885544 344443
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.05 E-value=7.1 Score=35.81 Aligned_cols=193 Identities=11% Similarity=0.041 Sum_probs=108.4
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCcccccCCCCcee---eeeEEEEcCCc--eEEEecC----CeEEEEECC--CCeeeEEe
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFM---KGLCMRYFDPE--AVVGCED----GTARVFDMY--SRKCSQII 229 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~---~~~~~~~~~~~--l~~~~~d----g~i~vwd~~--~~~~~~~~ 229 (430)
....++ +..++.+.+||+++.+..... .+... -...+...+.. |++++.. .+|++|.+. ++. +..+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 444555 566788999999887643221 12211 11222323333 5555432 468888664 343 3332
Q ss_pred ec-------CCCCeEEEEec--C--CC-EEEEEeCCCeEEEEeCC---CC----ceeEEEecCCCCCeEEEEEecCCCEE
Q 014104 230 RM-------HCAPVTSLSLS--E--DQ-LIISGSSLGSIAISGLS---SD----QRVATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 230 ~~-------~~~~i~~~~~~--~--~~-~l~~~~~dg~i~vwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
.. ....++.+++. + +. +++....+|.+..|-+. .+ +.+++|. ....+..|..+.....|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEecccCCE
Confidence 21 12346667764 3 23 66667788988877764 33 4578887 45589999999888899
Q ss_pred EEEeCCCeEEEEeCCC-----Cceeeeeec--CCCceEEEEEee-CCCC-eE-EEEcCCCeEEEEEcCC-CceEEEEEe
Q 014104 291 FAGTTAGYASCWDLRT-----MKSLWETRI--SPNVVYSLQHLQ-NDTS-TL-VVGGIDGVLRVLDQNT-GEVLSRCVM 358 (430)
Q Consensus 291 ~~~~~dg~i~i~d~~~-----~~~~~~~~~--~~~~v~~l~~~s-~~~~-~l-~s~~~dg~i~vwd~~~-~~~~~~~~~ 358 (430)
+.+-++.-|.-|+.+. ++.+....+ ....|-.|+.+. ++++ || ++.-.+++..||+.+. ...+..|..
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEe
Confidence 9999998888888763 222322222 235677777442 3332 45 4555788999999874 355666654
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.61 Score=27.30 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=25.8
Q ss_pred CceEEEEEeeCCCC---eEEEEcCCCeEEEEEcCCC
Q 014104 318 NVVYSLQHLQNDTS---TLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 318 ~~v~~l~~~s~~~~---~l~s~~~dg~i~vwd~~~~ 350 (430)
+++.++. |+|+.. +|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~k-FsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCK-FSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEE-eCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4678888 997554 8888888899999999953
|
It contains a characteristic DLL sequence motif. |
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.19 Score=36.65 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=27.3
Q ss_pred CccCCcHHHHHHHhcCCChhhhHHHHhhhH
Q 014104 23 TIESLNGDIICMIFSSLGFFDLVRCSAVCK 52 (430)
Q Consensus 23 ~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~ 52 (430)
.+..||.||+..||.+++..++..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 577899999999999999999988888887
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.86 E-value=6.6 Score=34.93 Aligned_cols=141 Identities=15% Similarity=0.157 Sum_probs=65.4
Q ss_pred eEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEE
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCY 283 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 283 (430)
+..++..|.|+.= ...|+.-+. ...-.+.+..+..+++ .+++++..-....-||.-... -..........|..|.|
T Consensus 117 ~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~~~~riq~~gf 194 (302)
T PF14870_consen 117 AELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRNSSRRIQSMGF 194 (302)
T ss_dssp EEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE
T ss_pred EEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccCccceehhcee
Confidence 4444455554432 223332222 2334567888887766 666666555556688754221 22222224568999999
Q ss_pred ecCCCEEEEEeCCCeEEEEeC-CCCceeee----eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 284 NPCSRLVFAGTTAGYASCWDL-RTMKSLWE----TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 284 ~~~~~~l~~~~~dg~i~i~d~-~~~~~~~~----~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.|++.+.+++ ..|.|+.=+. ...+.-.. .....-.+..++ +.+++...++|+ .|.+.+ ..+.|+-
T Consensus 195 ~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a-~~~~~~~wa~gg-~G~l~~-S~DgGkt 264 (302)
T PF14870_consen 195 SPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLA-YRPPNEIWAVGG-SGTLLV-STDGGKT 264 (302)
T ss_dssp -TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEE-ESSSS-EEEEES-TT-EEE-ESSTTSS
T ss_pred cCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEE-ecCCCCEEEEeC-CccEEE-eCCCCcc
Confidence 9998766654 8888888772 22222111 112223478888 877777666665 454432 3344543
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=92.82 E-value=4.9 Score=33.33 Aligned_cols=156 Identities=8% Similarity=0.066 Sum_probs=85.2
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCC--CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---C---eEEEE---eCC-
Q 014104 238 SLSLSEDQLIISGSSLGSIAISGLS--SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---G---YASCW---DLR- 305 (430)
Q Consensus 238 ~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~i~---d~~- 305 (430)
.+.....+.+..+...+.|.+|++. ..+.+.+|. .-+.|..+.++..|++|++--.+ . .+++| ...
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 4444432344444667889999988 344566666 44789999999999999985332 2 56665 222
Q ss_pred -CCceee-eeecC---------------------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-EEEEEeccC
Q 014104 306 -TMKSLW-ETRIS---------------------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-LSRCVMDIG 361 (430)
Q Consensus 306 -~~~~~~-~~~~~---------------------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~ 361 (430)
..+++. ++-|| ...+.++++..-.|+. +.|+ ++++.+|.+..... ...+..
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~~~~~~~~~~--- 174 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQTIQSEKFSF--- 174 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEEEEecccccE---
Confidence 112221 12221 2345566644445554 4443 56788988763222 110100
Q ss_pred cceeeeccCCceEEEeecccccCCcccccCCCCCCC-CeeEEEEcCeEEEEeeCCCeEEEEEec
Q 014104 362 SASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP-PITCLAVGMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 362 ~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~-~v~~v~~~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+-+ .+.+...|.. ....+++-+.|+|..++. .+++.++.
T Consensus 175 ----lDF-------------------e~~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl~ 214 (215)
T PF14761_consen 175 ----LDF-------------------ERSLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKLE 214 (215)
T ss_pred ----Eec-------------------hhhhhheecCceEEEEEEEeeEEEEecCC-EEEEEEEe
Confidence 000 0001111222 356788889999988865 67777764
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=92.79 E-value=1.3 Score=37.40 Aligned_cols=72 Identities=14% Similarity=0.143 Sum_probs=50.8
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEE-------ec------CCCCCeEEEEEecCCCEEEEEeCCCeEEE
Q 014104 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL-------RS------TDCTGIKTLCYNPCSRLVFAGTTAGYASC 301 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 301 (430)
++..+.. .++++++-+.+|.+++||+.+++.+..- .. .....|..+.++.+|.-+++- .+|..+.
T Consensus 14 ~~~~l~~-~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~ 91 (219)
T PF07569_consen 14 PVSFLEC-NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYS 91 (219)
T ss_pred ceEEEEe-CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEE
Confidence 4444544 4578888999999999999988765332 10 134578888888888877665 4577899
Q ss_pred EeCCCCc
Q 014104 302 WDLRTMK 308 (430)
Q Consensus 302 ~d~~~~~ 308 (430)
||..-+.
T Consensus 92 y~~~L~~ 98 (219)
T PF07569_consen 92 YSPDLGC 98 (219)
T ss_pred eccccce
Confidence 9877543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.74 E-value=8.3 Score=35.80 Aligned_cols=183 Identities=10% Similarity=0.031 Sum_probs=81.5
Q ss_pred eEEEEe-CCCeEEEEecCC----CeeEEeeecC--------CceeEEEEecCCCEEE---EEeC----CeEEEEEcCCCc
Q 014104 124 LILTGV-GDKVMRLWSLEG----YKCVEEYSLP--------NAASLVDFDFDESKIV---GLIG----TRICIWRRNGLR 183 (430)
Q Consensus 124 ~l~s~~-~dg~i~iwd~~~----~~~~~~~~~~--------~~~~~~~~~~~~~~l~---~~~~----~~i~vwd~~~~~ 183 (430)
+|+..+ ..+.|.|.|+.+ -+..+.++.. ........-|+|+.++ +..+ |.+.++|-++.+
T Consensus 89 ~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~ 168 (461)
T PF05694_consen 89 YLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFE 168 (461)
T ss_dssp EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--
T ss_pred cEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcccc
Confidence 666655 678999999874 3445555521 1122345557887776 2222 557777777644
Q ss_pred cc--ccCCCCceeeeeEE--EEcCCceEEE--------------------ecCCeEEEEECCCCeeeEEeecCC--CCeE
Q 014104 184 SV--FPSREGTFMKGLCM--RYFDPEAVVG--------------------CEDGTARVFDMYSRKCSQIIRMHC--APVT 237 (430)
Q Consensus 184 ~~--~~~~~~~~~~~~~~--~~~~~~l~~~--------------------~~dg~i~vwd~~~~~~~~~~~~~~--~~i~ 237 (430)
.. +....+.......+ .+..+.+++. ....++.+||+.+.+.++++.--. ....
T Consensus 169 v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pL 248 (461)
T PF05694_consen 169 VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPL 248 (461)
T ss_dssp EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEE
T ss_pred ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceE
Confidence 22 22211111111112 1112223332 235689999999999999887432 2355
Q ss_pred EEEec--CC-C-EEEEEeCCCeEEEEeC-CCCce----eEEEecC----------------CCCCeEEEEEecCCCEEEE
Q 014104 238 SLSLS--ED-Q-LIISGSSLGSIAISGL-SSDQR----VATLRST----------------DCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 238 ~~~~~--~~-~-~l~~~~~dg~i~vwd~-~~~~~----~~~~~~~----------------~~~~v~~~~~~~~~~~l~~ 292 (430)
.+.|. |+ . -++.+.-..+|..|-- ..++- +..+... ...-|+.+..|.|.++|..
T Consensus 249 EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYv 328 (461)
T PF05694_consen 249 EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYV 328 (461)
T ss_dssp EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEE
T ss_pred EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEE
Confidence 66665 43 2 2333334455555543 33321 2222110 0235789999999999986
Q ss_pred Ee-CCCeEEEEeCCC
Q 014104 293 GT-TAGYASCWDLRT 306 (430)
Q Consensus 293 ~~-~dg~i~i~d~~~ 306 (430)
.+ ..|.|+.||+..
T Consensus 329 s~W~~GdvrqYDISD 343 (461)
T PF05694_consen 329 SNWLHGDVRQYDISD 343 (461)
T ss_dssp EETTTTEEEEEE-SS
T ss_pred EcccCCcEEEEecCC
Confidence 65 589999999976
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.63 E-value=12 Score=38.46 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=43.2
Q ss_pred EEEecCCeEEEEeCCCeEEEEecCCCeeE---Ee----e--e---cCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc
Q 014104 117 QCRMKRGLILTGVGDKVMRLWSLEGYKCV---EE----Y--S---LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS 184 (430)
Q Consensus 117 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~----~--~---~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 184 (430)
|++-.++.++.|+.||.+.+|.+...... .. . . ....+..+...+.-..++...|+.+.++++...+.
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELEP 100 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCcccc
Confidence 55557789999999999999987653211 11 0 0 01223334444444556678888899888876554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=92.58 E-value=4.9 Score=38.47 Aligned_cols=68 Identities=9% Similarity=0.141 Sum_probs=41.9
Q ss_pred EEEEecCC-CEEEEEeCCCeEEEEeCCCCc--eeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCC
Q 014104 237 TSLSLSED-QLIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRT 306 (430)
Q Consensus 237 ~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 306 (430)
..+.|+|. ..++.-.....-.+++++... ....++ ..+.|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~--~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK--TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc--CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 35678876 444444433333455555333 333343 5678999999999998876533 33468888653
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.81 E-value=8.2 Score=33.63 Aligned_cols=183 Identities=11% Similarity=-0.011 Sum_probs=106.1
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe---eeEEeecCCCCe
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAPV 236 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i 236 (430)
.+++.. +..+..+++.|+.+.... ....-.......++...+....++..|.-+.+.|+.+.+ ....+....+.-
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~ 174 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT 174 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc
Confidence 455555 667788999999887632 222211112345666677777777756566677876543 333444444444
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 237 TSLSLSEDQLIISGSSLGSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 237 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
..++.+ +++...+..|+-+.+-|+.+... +.... ....+.++..+++..+++... .| +.+-|..+.+....+
T Consensus 175 ~~v~IS-Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n--~g~g~~sv~vsdnr~y~vvy~-eg-vlivd~s~~ssp~~~ 249 (370)
T COG5276 175 HDVAIS-GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN--TGPGTYSVSVSDNRAYLVVYD-EG-VLIVDVSGPSSPTVF 249 (370)
T ss_pred eeEEEe-cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe--cCCceEEEEecCCeeEEEEcc-cc-eEEEecCCCCCceEe
Confidence 566664 45666777889999999876433 33333 334788888887766665543 33 777787765533332
Q ss_pred ecC-CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 314 RIS-PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 314 ~~~-~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
... ...+.++..+.-.+++......+.-+.+-|+.+
T Consensus 250 gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 250 GSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred eccccCCcccccceecccceeeeeccccCceeEeccC
Confidence 211 122222211334466666666666566666653
|
|
| >PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.36 Score=35.51 Aligned_cols=66 Identities=15% Similarity=0.020 Sum_probs=48.1
Q ss_pred ccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCC-----CCCCCCchHHHHHHHHc
Q 014104 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGF-----SNTSGSSMRLHLEELAM 91 (430)
Q Consensus 24 ~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 91 (430)
+-.+|++++.-||..+.|..|.+....|... +-.++.||+.+|.+.+.. .+....+|+..+..+..
T Consensus 4 vG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~ 74 (109)
T PF06881_consen 4 VGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKK 74 (109)
T ss_pred cCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcccccccchHHHHHHHHHH
Confidence 5579999999999999999999999887432 234689999999999842 11133466665555433
|
In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.58 E-value=5.6 Score=40.10 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=50.6
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCC----------Cce-e--eee--------ecCCCceEEEEEeeCC---CCe
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRT----------MKS-L--WET--------RISPNVVYSLQHLQND---TST 332 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~-~--~~~--------~~~~~~v~~l~~~s~~---~~~ 332 (430)
.|..+.++|+|.+|+..|..| |.|..+.. ++. + ..+ ..+...|..+. |+|. +..
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~-WhP~s~~~~~ 163 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVR-WHPWSESDSH 163 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEE-EcCCCCCCCe
Confidence 688999999999999888877 44444421 111 1 011 12235678888 8776 478
Q ss_pred EEEEcCCCeEEEEEcCCC
Q 014104 333 LVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~ 350 (430)
|+.-..|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999999753
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=91.41 E-value=5.9 Score=38.97 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=63.0
Q ss_pred EEecCCeEEEEECCCCeeeEEee-cCCCCeEEEEec--CC-CEEEEEeCCCeEEEEeCC-----C----CceeEEE--ec
Q 014104 208 VGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLS-----S----DQRVATL--RS 272 (430)
Q Consensus 208 ~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~~--~~-~~l~~~~~dg~i~vwd~~-----~----~~~~~~~--~~ 272 (430)
+-+....+.|||.+.+.....-. ...+.|.+++|. |+ +.+++.+....|.++--. . -..++.+ ..
T Consensus 46 V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~ 125 (631)
T PF12234_consen 46 VDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS 125 (631)
T ss_pred EECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec
Confidence 34445679999998876443322 346899999998 44 777788888889888532 1 1223333 22
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
....+|.+..|.++|.+++..+ ..+.|+|-.
T Consensus 126 ~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 126 HTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 2235899999999987665443 458888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.85 E-value=2.6 Score=38.84 Aligned_cols=156 Identities=13% Similarity=0.051 Sum_probs=92.5
Q ss_pred eEEEEecCCCEEEEEeCCeEEEEEcCCCcc----cccCCCCce---ee-eeEEEEcCCceEEEecCCeEEEE-ECCCC-e
Q 014104 155 SLVDFDFDESKIVGLIGTRICIWRRNGLRS----VFPSREGTF---MK-GLCMRYFDPEAVVGCEDGTARVF-DMYSR-K 224 (430)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~----~~~~~~~~~---~~-~~~~~~~~~~l~~~~~dg~i~vw-d~~~~-~ 224 (430)
..+-..||++.+..-...++.++++.+... +.....+.. +. .......+..+.++..||-|.-| |.+.+ .
T Consensus 224 ~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr~~~~ 303 (733)
T COG4590 224 SQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVRRDGQ 303 (733)
T ss_pred HhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeeecCCC
Confidence 346678899999866668899998876542 222212211 00 11111223338889999999877 54432 1
Q ss_pred ----eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 225 ----CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 225 ----~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
.++.++-...++..+.-..+ +-+++-+..|++.++.....+.+-.-. .-..+.-++++|++.++++-. .|.+
T Consensus 304 p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~--~~~~~~~~~~Sp~~~~Ll~e~-~gki 380 (733)
T COG4590 304 PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER--AYQAPQLVAMSPNQAYLLSED-QGKI 380 (733)
T ss_pred CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh--hhcCcceeeeCcccchheeec-CCce
Confidence 12223222334444433323 567788888999888765444432222 223567789999999998764 4669
Q ss_pred EEEeCCCCceeeee
Q 014104 300 SCWDLRTMKSLWET 313 (430)
Q Consensus 300 ~i~d~~~~~~~~~~ 313 (430)
+++.+++..+..++
T Consensus 381 ~~~~l~Nr~Peisw 394 (733)
T COG4590 381 RLAQLENRNPEISW 394 (733)
T ss_pred EEEEecCCCCCccH
Confidence 99998876554443
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.34 E-value=4.7 Score=41.69 Aligned_cols=121 Identities=12% Similarity=0.024 Sum_probs=73.8
Q ss_pred CeEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeE-----EEec-----CCCCCeEEEEEecCCC-EEEEEeCCCeEE
Q 014104 235 PVTSLSLSED---QLIISGSSLGSIAISGLSSDQRVA-----TLRS-----TDCTGIKTLCYNPCSR-LVFAGTTAGYAS 300 (430)
Q Consensus 235 ~i~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~-----~~~~-----~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 300 (430)
+|..+...+| ..++..+.+-.|..||+++-..-. .+.. .......++.|+|.-. ..+....|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4445555544 233444455579999987532211 1110 0223566778887543 345567788888
Q ss_pred EEeCCCCcee-eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 301 CWDLRTMKSL-WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 301 i~d~~~~~~~-~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+..+...... ..+. -....++++ |+|.|+.++.|-..|++.-|... ++....+..
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~-WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~ 237 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVL-WSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPE 237 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEE-eccccceeeEecCCCeEEEeecc-cceeecccC
Confidence 8876643222 2222 235678888 99999999999999999998754 555555544
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.4 Score=41.70 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=29.8
Q ss_pred eEEEEEeeC----CCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 320 VYSLQHLQN----DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 320 v~~l~~~s~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
...++ .++ +..+|++.+.|+++|+||+.+++++.+....
T Consensus 217 ~~~~~-~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLA-VSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEE-E-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred cceEE-EecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 44444 545 6779999999999999999999998776543
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.41 E-value=15 Score=37.09 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=50.9
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC-ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG-EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
-.|..+. ++|+|.+|+..|..| |.|-.+... -.-..+......+.+-+..-+. ..+...+.
T Consensus 85 f~v~~i~-~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~----------------~~~~~~~~ 146 (717)
T PF10168_consen 85 FEVHQIS-LNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE----------------RFFTSNSS 146 (717)
T ss_pred eeEEEEE-ECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech----------------hhccCCCC
Confidence 3577787 999999998888765 444444310 0001111111111000000000 01112344
Q ss_pred CCeeEEEEc-----CeEEEEeeCCCeEEEEEecCC
Q 014104 397 PPITCLAVG-----MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 397 ~~v~~v~~~-----~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..|..+.|+ +..|+.=..|+++|+||+...
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 678889993 677888899999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.33 E-value=14 Score=32.27 Aligned_cols=181 Identities=9% Similarity=0.103 Sum_probs=110.7
Q ss_pred EeccccceeEEEecC-C-eEEEEeCCCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 108 WKAHSVGVDQCRMKR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 108 l~~h~~~v~~~~~~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
+.|-.+.|.++.|+. . .|++......-.||=...|+.+.++... .....+.+.-++++++ --.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 456666699999943 3 7777777777777777788999888753 4445577777777776 345677777766544
Q ss_pred ccc---------ccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee---eEEeecC-------CCCeEEEEe
Q 014104 183 RSV---------FPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQIIRMH-------CAPVTSLSL 241 (430)
Q Consensus 183 ~~~---------~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~-------~~~i~~~~~ 241 (430)
... +.. ........+++.+....+..+-+-.-+.||....... .+....+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 211 111 1123345567777777788888887888877653321 1111111 124677888
Q ss_pred cC--CCEEEEEeCCCeEEEEeCCCCceeEEEec---CC-----CCCeEEEEEecCCCE
Q 014104 242 SE--DQLIISGSSLGSIAISGLSSDQRVATLRS---TD-----CTGIKTLCYNPCSRL 289 (430)
Q Consensus 242 ~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~-----~~~v~~~~~~~~~~~ 289 (430)
++ +.+++.+.+++.+.-.|.. |..+..+.- .| -.+...++..++|.+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 84 4677888888888888865 554443321 01 114455666666553
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=89.07 E-value=22 Score=34.20 Aligned_cols=142 Identities=13% Similarity=0.100 Sum_probs=72.3
Q ss_pred cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC----eEEEEEecC
Q 014104 211 EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG----IKTLCYNPC 286 (430)
Q Consensus 211 ~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~ 286 (430)
..+...++|. .|.....+.........+...++..++.++. ..+..+|+. |+.+..... ... =..+...|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l--~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDL--PGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE----TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCC-CCEEEeeec--CCcccccccccEECCC
Confidence 3556777775 5666555543222221145556644555444 889999975 777666553 221 245677899
Q ss_pred CCEEEEEeC-------------CCeEEEEeCCCCceeeeeec--CC-------------------------CceEEEEEe
Q 014104 287 SRLVFAGTT-------------AGYASCWDLRTMKSLWETRI--SP-------------------------NVVYSLQHL 326 (430)
Q Consensus 287 ~~~l~~~~~-------------dg~i~i~d~~~~~~~~~~~~--~~-------------------------~~v~~l~~~ 326 (430)
|++|+.+.. .-.|..+| .+|+.+..+.. |- --++++. +
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~-y 278 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID-Y 278 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE-E
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccE-E
Confidence 999887771 12355666 66665544221 10 1367887 7
Q ss_pred eC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 327 QN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 327 s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
.+ ++..++++=.-..|...|.++++....+..+
T Consensus 279 d~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 279 DPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp ETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred eCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 77 5555555555568999998888887777654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=20 Score=33.30 Aligned_cols=40 Identities=5% Similarity=0.066 Sum_probs=19.5
Q ss_pred CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeC
Q 014104 213 GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 213 g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~ 252 (430)
..+.+||..+.+-.. .+......-.++....+.+.+.|+.
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~ 230 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGE 230 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeee
Confidence 358889987764321 1211111123444445666666653
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.65 E-value=4.7 Score=42.34 Aligned_cols=152 Identities=10% Similarity=0.134 Sum_probs=84.2
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe--------cCCCEEEEEeCCCeEEEEeCCC----Ccee-----eee
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN--------PCSRLVFAGTTAGYASCWDLRT----MKSL-----WET 313 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~i~d~~~----~~~~-----~~~ 313 (430)
+.|+.+.+|+.+++.....+.+ ....|..|..- |.=+++..-..--.|.++-+.- +..- ..+
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~-~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDG-LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccc-hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 5688999999999777776665 44556555432 2223333333344466664432 1110 122
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC----CC---ceEEEEEeccCcceeeeccCCceEEEeecccccCCc
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN----TG---EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~----~~---~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~ 386 (430)
......|.++. ...+|+.+++| .|| .+|.+. +| +..+.+.. +.|.-..+ ++
T Consensus 175 ~~dg~~V~~I~-~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kicl--------t~s~ls~l-------vP--- 232 (1311)
T KOG1900|consen 175 SVDGVSVNCIT-YTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICL--------TKSVLSSL-------VP--- 232 (1311)
T ss_pred ecCCceEEEEE-eccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccC--------chhHHHHh-------hh---
Confidence 22245678887 77788877666 555 555543 11 10111110 00000000 00
Q ss_pred ccccCCCCCCCCeeEEEEcC--eEEEEeeCCCeEEEEEecC
Q 014104 387 CIDRIPKTIRPPITCLAVGM--KKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~~~--~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+-.++..+..+|..+++|. +.+.+=++.|+|++|++..
T Consensus 233 s~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 233 SLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 12233356778999999974 4478889999999999976
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.45 E-value=9.4 Score=40.26 Aligned_cols=136 Identities=17% Similarity=0.209 Sum_probs=84.9
Q ss_pred EecCCeEEEEECCCCeeeEEeecCCCCeEEEEec---CC------CEEEEEeCCCeEEEEeCC----CCce---e--EEE
Q 014104 209 GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS---ED------QLIISGSSLGSIAISGLS----SDQR---V--ATL 270 (430)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~---~~------~~l~~~~~dg~i~vwd~~----~~~~---~--~~~ 270 (430)
.+-|+.+.+|+.+++.....+.+-...|..|..- || ++++.-+.--.|.++-+. ++.. . .++
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 3557899999999987777777766677666554 22 233333333445554332 1111 1 122
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC----CCC---c-e----------------eeeee-cCCCceEEEEE
Q 014104 271 RSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL----RTM---K-S----------------LWETR-ISPNVVYSLQH 325 (430)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~----~~~---~-~----------------~~~~~-~~~~~v~~l~~ 325 (430)
.. ....|.++....+|+.+++| .|| .+|.+ ..+ + + +..+. .+.++|..+.
T Consensus 175 ~~-dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~- 249 (1311)
T KOG1900|consen 175 SV-DGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT- 249 (1311)
T ss_pred ec-CCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE-
Confidence 21 34478999988889877776 455 34433 111 0 0 11223 4567899998
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
.......+.+-+..|+|.+||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 877778899999999999999975
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.061 Score=49.33 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=94.9
Q ss_pred EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT 276 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 276 (430)
+.+.+..++.++.+-.+..||- .++...... .++....++|.. + ..++.+-..+.+.+||+.+... ..++.....
T Consensus 42 w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqLE~gg~~ 118 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQLESGGTS 118 (615)
T ss_pred EecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHHhccCcc
Confidence 3444555888888888999984 444444433 345556777773 3 4566677789999999975432 233221222
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
.-.-+.|++.+..++.|...|.+.|++..+.+.+...-.|...+.+++ +.+.+. .+.++.|..+.+-
T Consensus 119 s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~a-v~lEd~-vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 119 SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIA-VTLEDY-VILCDCDNTLSVT 185 (615)
T ss_pred hHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEE-ecccce-eeecCcHHHHHHh
Confidence 222267888889999999999999999988776665555888888998 877665 4555555555443
|
|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=0.6 Score=42.42 Aligned_cols=38 Identities=24% Similarity=0.552 Sum_probs=33.9
Q ss_pred CccCCcHHHHHHHhcCC-ChhhhHHHHhhhHHHHHhcCC
Q 014104 23 TIESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAIINR 60 (430)
Q Consensus 23 ~~~~Lp~e~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~ 60 (430)
....||.|++..|.+.| ..-|+.+...||+.|+..+..
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 45689999999999999 788999999999999987663
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.61 E-value=22 Score=32.37 Aligned_cols=154 Identities=13% Similarity=0.109 Sum_probs=84.0
Q ss_pred CCCeEEEEecCCCEEEEEeCCCeEEEE-eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 233 CAPVTSLSLSEDQLIISGSSLGSIAIS-GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 233 ~~~i~~~~~~~~~~l~~~~~dg~i~vw-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
.+.+.++.+.++..++..+..|.+..- | ..++.-..........++++.+.|+++.+++| ..|.+.+=....+..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 457888888887655566666765532 2 22232233333345589999999999877665 56765432333333222
Q ss_pred eeec----CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 312 ETRI----SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 312 ~~~~----~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
.... ....+..+. +.+++..+++ +.+|.+.. ....|+--........
T Consensus 250 ~~~~~~~~~~~~l~~v~-~~~~~~~~~~-G~~G~v~~-S~d~G~tW~~~~~~~~-------------------------- 300 (334)
T PRK13684 250 KPIIPEITNGYGYLDLA-YRTPGEIWAG-GGNGTLLV-SKDGGKTWEKDPVGEE-------------------------- 300 (334)
T ss_pred cccCCccccccceeeEE-EcCCCCEEEE-cCCCeEEE-eCCCCCCCeECCcCCC--------------------------
Confidence 1111 123467777 7777775554 45665543 3333432222211000
Q ss_pred cccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEec
Q 014104 388 IDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~ 424 (430)
-....+.+.+ +++..+..|..|.|-.|+-.
T Consensus 301 -------~~~~~~~~~~~~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 301 -------VPSNFYKIVFLDPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred -------CCcceEEEEEeCCCceEEECCCceEEEecCC
Confidence 0124555555 56666667788988877643
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=87.37 E-value=23 Score=32.36 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=19.4
Q ss_pred CeEEEEECCCCee--eEEeecCCCCeEEEEecCCCEEEEEeC
Q 014104 213 GTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 213 g~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~ 252 (430)
..+.+||..+.+= +..+......-.+++...+.+.+.|+.
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 209 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGE 209 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeee
Confidence 4688899876542 222211011112333335566666664
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=87.19 E-value=2.2 Score=23.09 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=22.4
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEee
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEY 148 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 148 (430)
.++.++.++.+|.+...|..+|+.+..+
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 4567888888999999999888877543
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.14 E-value=29 Score=33.37 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=40.5
Q ss_pred cceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 113 VGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 113 ~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+|..+.++ .|.+..|+.|| +..||..+++.++.-..+. .+..+..+..++..+++ +..+.+.+.++
T Consensus 165 ~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWVGT-dqGv~~~e~~G 234 (671)
T COG3292 165 TPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWVGT-DQGVYLQEAEG 234 (671)
T ss_pred ccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEEEe-ccceEEEchhh
Confidence 456666664 45777788877 5667777777776555443 33334455555555554 44466666665
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=86.79 E-value=24 Score=31.92 Aligned_cols=135 Identities=14% Similarity=0.159 Sum_probs=61.4
Q ss_pred EEecCCeEEEEeCC-----CeEEEEecCCCeeE---Eeee-cCCce-eEEEEecCCCEEE-EEe-----CCeEEEEEcCC
Q 014104 118 CRMKRGLILTGVGD-----KVMRLWSLEGYKCV---EEYS-LPNAA-SLVDFDFDESKIV-GLI-----GTRICIWRRNG 181 (430)
Q Consensus 118 ~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~---~~~~-~~~~~-~~~~~~~~~~~l~-~~~-----~~~i~vwd~~~ 181 (430)
+.+.+..++.|+.+ ..+..+|+.+.+.. ..+. .+... ...+...++...+ ++. ...+..||+.+
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 33444455556654 35666777665431 1111 12111 1122233455444 443 24678888877
Q ss_pred Cccc-cc-CCCCceeeeeEEEEcCCceEEEecCC----eEEEEECCCCeeeEEeecC---CCC-----eEEEEecCCCEE
Q 014104 182 LRSV-FP-SREGTFMKGLCMRYFDPEAVVGCEDG----TARVFDMYSRKCSQIIRMH---CAP-----VTSLSLSEDQLI 247 (430)
Q Consensus 182 ~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~---~~~-----i~~~~~~~~~~l 247 (430)
.+-. .. ..........+....+...+.|+.++ .+.+||+.+.+-. .+... ..+ ...+....+.++
T Consensus 149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~p~~~~~~~~~~~~~~~iy 227 (323)
T TIGR03548 149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ-KVADPTTDSEPISLLGAASIKINESLLL 227 (323)
T ss_pred CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE-ECCCCCCCCCceeccceeEEEECCCEEE
Confidence 6521 11 11111112222333444466676653 3568888776422 11110 011 122334355777
Q ss_pred EEEeCC
Q 014104 248 ISGSSL 253 (430)
Q Consensus 248 ~~~~~d 253 (430)
+.|+.+
T Consensus 228 v~GG~~ 233 (323)
T TIGR03548 228 CIGGFN 233 (323)
T ss_pred EECCcC
Confidence 778765
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=86.58 E-value=24 Score=31.84 Aligned_cols=65 Identities=9% Similarity=-0.031 Sum_probs=33.1
Q ss_pred cCCceEEEec-----CCeEEEEECCCCee--eEEeecCCCCeEEEEecCCCEEEEEeCCC----eEEEEeCCCCce
Q 014104 202 FDPEAVVGCE-----DGTARVFDMYSRKC--SQIIRMHCAPVTSLSLSEDQLIISGSSLG----SIAISGLSSDQR 266 (430)
Q Consensus 202 ~~~~l~~~~~-----dg~i~vwd~~~~~~--~~~~~~~~~~i~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~ 266 (430)
.+...+.|+. ...+..||+.+.+= +..+......-..++...+.+.+.|+.++ .+.+||..+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3333555553 24688889876542 21121111111122233556777777653 356888887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=86.38 E-value=4.5 Score=23.23 Aligned_cols=36 Identities=8% Similarity=0.064 Sum_probs=25.2
Q ss_pred eEEE-EeCCCeEEEEecCCCeeEEeeecCCceeEEEE
Q 014104 124 LILT-GVGDKVMRLWSLEGYKCVEEYSLPNAASLVDF 159 (430)
Q Consensus 124 ~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 159 (430)
+|++ ...+++|.++|..+++.+..+........+.|
T Consensus 5 ~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 5 KLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4444 44578999999999998888876544444443
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.24 E-value=17 Score=34.40 Aligned_cols=94 Identities=14% Similarity=0.112 Sum_probs=48.1
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
.|..+. .++.|..++-.+.+|.+.++=.+..-.-..+......+.+-+++-+..++. ....-.
T Consensus 105 eV~~vl-~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft----------------ss~~lt 167 (741)
T KOG4460|consen 105 EVYQVL-LSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT----------------SSTSLT 167 (741)
T ss_pred EEEEEE-ecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec----------------cCCcee
Confidence 366666 788999888888888655432111111111111111112222222222211 111123
Q ss_pred eeEEEEc-----CeEEEEeeCCCeEEEEEecCCCcC
Q 014104 399 ITCLAVG-----MKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 399 v~~v~~~-----~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+..++|+ +..|+.-+.|..||+|++....++
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 4456662 456777788999999999865543
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.83 E-value=42 Score=35.63 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeE
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ 227 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 227 (430)
+.....++|++....++ ++..|.|+++-...-+.......... .....+........+...+..+.+|.......+
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~- 113 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGV- 113 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeeccccccee-
Confidence 34566789999999998 99999999998766543222111110 111111112222333344445555543221111
Q ss_pred EeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC
Q 014104 228 IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~ 262 (430)
.+...+++....+- .+ .-+ ..+.+++||..
T Consensus 114 ---~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~ 144 (993)
T KOG1983|consen 114 ---FLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVL 144 (993)
T ss_pred ---ecCCcceeccCCCCcch-hcc-cCceeeEeeec
Confidence 12334444444322 34 455 88888888865
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=85.76 E-value=25 Score=31.19 Aligned_cols=165 Identities=9% Similarity=0.049 Sum_probs=0.0
Q ss_pred eEEEEECCCCeeeEEee------cCCCCeEEEEecC-------CCEEEEEeCCCeEEEEeCCCCceeEEEecCCC-----
Q 014104 214 TARVFDMYSRKCSQIIR------MHCAPVTSLSLSE-------DQLIISGSSLGSIAISGLSSDQRVATLRSTDC----- 275 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~------~~~~~i~~~~~~~-------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----- 275 (430)
.|.+||+.+++.++.+. ...+.+..+.+.. +-..++=+..+.+.|+|+.+++.-+.+.....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Q ss_pred -------------CCeEEEEEec---CCCEEEEEeCCCeEEEEeCCCC--------------ceeeeeecCCCceEEEEE
Q 014104 276 -------------TGIKTLCYNP---CSRLVFAGTTAGYASCWDLRTM--------------KSLWETRISPNVVYSLQH 325 (430)
Q Consensus 276 -------------~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~--------------~~~~~~~~~~~~v~~l~~ 325 (430)
..+..++.+| +|+.|+-..-.+ -++|.+.+. +.+..+-........++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~- 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMA- 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEE-
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEE-
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCC-----CceEEEEEec-cCcceeeeccC--CceEEEeecc
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNT-----GEVLSRCVMD-IGSASSSSNKV--SGVIERNEGR 380 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~-----~~~~~~~~~~-~~~~~~~~~s~--d~~v~~~~~~ 380 (430)
++++|...++--..+.|..|+... ...+-..... -.....+.... +|.+++...+
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=85.67 E-value=5 Score=23.05 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=25.1
Q ss_pred CCCCeEEEEc-CCCeEEEEEcCCCceEEEEEec
Q 014104 328 NDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 328 ~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
|++++|+++. .++.|.++|..+++.+..+...
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 5677666554 6789999999999988888764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.58 E-value=24 Score=30.89 Aligned_cols=150 Identities=10% Similarity=-0.000 Sum_probs=87.7
Q ss_pred ceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeec-CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc-cccCCC
Q 014104 114 GVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL-PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS-VFPSRE 190 (430)
Q Consensus 114 ~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~ 190 (430)
-+..+.++.++.+.+..+.-++|.|+.+.+.-..+.. +.......+.-.|++.. +..+..+.+.|+.+.+. ++...-
T Consensus 88 l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagry 167 (370)
T COG5276 88 LFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRY 167 (370)
T ss_pred hhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeeee
Confidence 3445566777888888888999999987543322221 12244456666788877 55588888899887652 221111
Q ss_pred C-ceeeeeEEEEcCCceEEEecCCeEEEEECCCCee---eEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 191 G-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 191 ~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 265 (430)
. .....-.....++....+..|+-+.+.|+..... +.... ....+.++..+++.-.++-. +.-+.+-|..+.+
T Consensus 168 a~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy-~egvlivd~s~~s 244 (370)
T COG5276 168 ALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY-DEGVLIVDVSGPS 244 (370)
T ss_pred ccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc-ccceEEEecCCCC
Confidence 1 0000122333566677778899999999865432 22222 22367888887774333333 3345566665544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=85.38 E-value=31 Score=31.91 Aligned_cols=102 Identities=11% Similarity=0.102 Sum_probs=54.6
Q ss_pred CCeEEEEecCCCEEEEEeCCCeEEEEeCCCC-----c--ee-EEEecC---CCCCeEEEEEecCCCEEEEEeCC------
Q 014104 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSD-----Q--RV-ATLRST---DCTGIKTLCYNPCSRLVFAGTTA------ 296 (430)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~-----~--~~-~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d------ 296 (430)
.....+++.++. ++.++.....++.|.... + .+ ..+... +......++|.|+|.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred CCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 345778887776 444554443334454311 1 11 122221 12347789999999876644411
Q ss_pred -------------CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 297 -------------GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 297 -------------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
|.|.-+|...++.. .+.........++ |+++|+++++-..
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~-~d~~G~l~~tdn~ 203 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHS-VDSWGDVFFCDND 203 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeEE-EEecCcCCCccce-ECCCCCEEEEccC
Confidence 44566666544332 2222223346787 8899987766443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=85.16 E-value=21 Score=29.76 Aligned_cols=49 Identities=16% Similarity=0.121 Sum_probs=36.0
Q ss_pred CEEEEEeCCCeEEEEeCCC--CceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 288 RLVFAGTTAGYASCWDLRT--MKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 288 ~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
+.|+.+.....|.+|++.+ .+++.++..- +.|..+. ++..|++|+|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~-y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLV-YSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEE-eccccceEEEEEe
Confidence 4555556677899999883 4455555543 8899999 9999999998653
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.08 E-value=21 Score=33.90 Aligned_cols=77 Identities=16% Similarity=0.061 Sum_probs=49.5
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeC---------CCCceeeeee-----------cCCCceEEEEEeeCCC---CeE
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDL---------RTMKSLWETR-----------ISPNVVYSLQHLQNDT---STL 333 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~-----------~~~~~v~~l~~~s~~~---~~l 333 (430)
.|..+..++.|..++-.+.+|.+.++=. +.|+..-..+ ...-.+...+ |+|+. ..|
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~-WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAA-WHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeecc-ccCCccCCceE
Confidence 5777888999999999999996555431 1232221111 0112344555 78875 577
Q ss_pred EEEcCCCeEEEEEcCCCceEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~ 354 (430)
..-+.|+.|++||+.....+.
T Consensus 184 ~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEEecCcEEEEEecCCcchhh
Confidence 777889999999998655443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=84.71 E-value=31 Score=31.36 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=54.5
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEeCCCCce---eEEEe---cCCCCCeEEEEEecC---CCEEEEEeC-C--------
Q 014104 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQR---VATLR---STDCTGIKTLCYNPC---SRLVFAGTT-A-------- 296 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~~-d-------- 296 (430)
..+.|+|.|+..++.+...|.|++++ ..+.. +..+. .........++++|+ ..+|.+... .
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35789999885556667799999999 44443 22221 123347899999994 233433322 1
Q ss_pred CeEEEEeCCCC-------ceee-eeec---CCCceEEEEEeeCCCCeEEEEcCC
Q 014104 297 GYASCWDLRTM-------KSLW-ETRI---SPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 297 g~i~i~d~~~~-------~~~~-~~~~---~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
..|.-|....+ +.+. .+.. ....-..|. |.|||.+.++.+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~-fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLA-FGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEE-E-TTSEEEEEEB-T
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCcccc-CCCCCcEEEEeCCC
Confidence 13444444322 1111 1122 123445677 99999766666543
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=84.34 E-value=18 Score=31.92 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=57.3
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe------CCCeEEEEeCCCCceeeeeec-----CCCceE
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT------TAGYASCWDLRTMKSLWETRI-----SPNVVY 321 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~-----~~~~v~ 321 (430)
-..|++||..+.+-...-.+ -.+.|+.+.|..+.++++.|. ....+..||..+..-. .+.. -.++|.
T Consensus 15 C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEE
Confidence 34699999887665444433 567899999986666666663 3556888998865432 2222 136777
Q ss_pred EEEEeeCCCCeEE-EEc-C--CCeEEEEEcC
Q 014104 322 SLQHLQNDTSTLV-VGG-I--DGVLRVLDQN 348 (430)
Q Consensus 322 ~l~~~s~~~~~l~-s~~-~--dg~i~vwd~~ 348 (430)
.+.....|+..+. +|. . +..|..||=.
T Consensus 93 a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred EEEeeccCCceEEEeceecCCCceEEEEcCC
Confidence 7764444554443 333 2 3346666533
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=84.34 E-value=35 Score=31.67 Aligned_cols=26 Identities=4% Similarity=0.049 Sum_probs=17.1
Q ss_pred eEEEEcCeEEEEeeCCC------eEEEEEecC
Q 014104 400 TCLAVGMKKVVTTHNSK------YIRLWKFNY 425 (430)
Q Consensus 400 ~~v~~~~~~l~t~~~Dg------~v~vw~~~~ 425 (430)
.++.++++.++.||... .|..++.+.
T Consensus 338 ~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~ 369 (376)
T PRK14131 338 VSVSWNNGVLLIGGETAGGKAVSDVTLLSWDG 369 (376)
T ss_pred EEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcC
Confidence 46777888888888642 455555544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=84.00 E-value=36 Score=31.50 Aligned_cols=115 Identities=15% Similarity=0.046 Sum_probs=57.9
Q ss_pred eEEEEeCCC--Cce--eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEE-eCCCC-----c--ee-eeeec----CC
Q 014104 255 SIAISGLSS--DQR--VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCW-DLRTM-----K--SL-WETRI----SP 317 (430)
Q Consensus 255 ~i~vwd~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~-d~~~~-----~--~~-~~~~~----~~ 317 (430)
.|.+++-.+ |+. ...+.. .......+++.++| |+++.... |..| |.... + .+ ..+.. +.
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~~-i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~ 123 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPPD-ILFLRDKDGDDKADGEREVLLSGFGGQINNHH 123 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCCe-EEEEeCCCCCCCCCCccEEEEEccCCCCCccc
Confidence 666665432 332 223332 23356889999888 44444444 4444 54321 1 11 11222 12
Q ss_pred CceEEEEEeeCCCCeEEEEcCC-------------------CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEE
Q 014104 318 NVVYSLQHLQNDTSTLVVGGID-------------------GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~d-------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~ 375 (430)
.....+. +.|||.+.++-+.. |.|.-+|...++ +..+........-++++++|.+.
T Consensus 124 ~~~~~l~-~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~ 198 (367)
T TIGR02604 124 HSLNSLA-WGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVF 198 (367)
T ss_pred ccccCce-ECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEE
Confidence 4466787 89999866554421 445666655433 33333332333455666677664
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.95 E-value=30 Score=35.87 Aligned_cols=141 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred eEEEEeCCCCceeEEEecCCCC---CeEEEEEecCCCE-EEEEe------------CCCeEEEEeCCCCceeeeeecCCC
Q 014104 255 SIAISGLSSDQRVATLRSTDCT---GIKTLCYNPCSRL-VFAGT------------TAGYASCWDLRTMKSLWETRISPN 318 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~-l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~ 318 (430)
.|+++|..+++.+..+.-..+. .+..+.|+..... +...+ .+|.++.|++-......++-.+..
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
...-+.+..|-..++++| ....+++||+...++++.... +.-...
T Consensus 934 ~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~----------------------------------k~~p~~ 978 (1205)
T KOG1898|consen 934 IPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCEL----------------------------------KFIPNR 978 (1205)
T ss_pred CCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhh----------------------------------ccCceE
Q ss_pred eeEEEEcCeEEEEeeCCCeEEEEEecCCCcCC
Q 014104 399 ITCLAVGMKKVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 399 v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
|+.+.+.+.+++.|..--.|.++..+.++.-|
T Consensus 979 Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l 1010 (1205)
T KOG1898|consen 979 ISSIQTYGARIVVGDIQESVHFVRYRREDNQL 1010 (1205)
T ss_pred EEEEeecceEEEEeeccceEEEEEEecCCCeE
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=83.21 E-value=30 Score=30.02 Aligned_cols=109 Identities=15% Similarity=0.061 Sum_probs=64.7
Q ss_pred CeEEEEecCC-CEEEEEe---CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEe-CCCCce
Q 014104 235 PVTSLSLSED-QLIISGS---SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWD-LRTMKS 309 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d-~~~~~~ 309 (430)
.+.+.+++++ +.++... ....+.++.. +....... ....+..-.|++++...+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 6788889865 5444443 3334555553 33333332 223677889999988777766666666663 333322
Q ss_pred e-eeeecC--CCceEEEEEeeCCCCeEEEEc---CCCeEEEEEcC
Q 014104 310 L-WETRIS--PNVVYSLQHLQNDTSTLVVGG---IDGVLRVLDQN 348 (430)
Q Consensus 310 ~-~~~~~~--~~~v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~ 348 (430)
. ..+... .+.|..+. +||||..++... .++.|.+=-+.
T Consensus 101 ~~~~v~~~~~~~~I~~l~-vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALR-VSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eeEEecccccCCceEEEE-ECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 2 112211 12799999 999999876655 35677766543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=82.95 E-value=34 Score=30.53 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCC-------------CeEEEEEecCCCEEEEE------------------eCCCe
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCT-------------GIKTLCYNPCSRLVFAG------------------TTAGY 298 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~l~~~------------------~~dg~ 298 (430)
|-..|.+.+.| .+.+.+.++. ... ....+.+.++|..|++. -.|+.
T Consensus 21 g~g~G~~~~lD-~~y~~i~~v~--~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~ 97 (299)
T PF14269_consen 21 GYGYGSYVILD-SSYEVIWNVS--AGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDV 97 (299)
T ss_pred ccccceEEEEC-CCCcEEEEEE--CCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecce
Q ss_pred EEEEeCCCCceeeeeecCCCc---------------------------eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 299 ASCWDLRTMKSLWETRISPNV---------------------------VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~---------------------------v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
+.-.|+.+++.+.+...-..- ++++. ..++|.+|++.=.-..|.+.|..+|+
T Consensus 98 ~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~-~~~~G~yLiS~R~~~~i~~I~~~tG~ 176 (299)
T PF14269_consen 98 FQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVD-KDDDGDYLISSRNTSTIYKIDPSTGK 176 (299)
T ss_pred eEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeee-ecCCccEEEEecccCEEEEEECCCCc
Q ss_pred eEEEEEec-------cCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEE
Q 014104 352 VLSRCVMD-------IGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 352 ~~~~~~~~-------~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~ 422 (430)
.+..+.+. .. ...+-.-|.+++-.+..++.|.|+|
T Consensus 177 I~W~lgG~~~~df~~~~------------------------------------~~f~~QHdar~~~~~~~~~~IslFD 218 (299)
T PF14269_consen 177 IIWRLGGKRNSDFTLPA------------------------------------TNFSWQHDARFLNESNDDGTISLFD 218 (299)
T ss_pred EEEEeCCCCCCcccccC------------------------------------CcEeeccCCEEeccCCCCCEEEEEc
|
|
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=82.79 E-value=34 Score=30.42 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=39.6
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 014104 238 SLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 238 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
+-.|+.+++.++-+..|.+..+|..+|+...... ..+....++|. |+++++|.
T Consensus 207 SPRWhdgrLwvldsgtGev~~vD~~~G~~e~Va~--vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 207 SPRWYQGKLWLLNSGRGELGYVDPQAGKFQPVAF--LPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred CCcEeCCeEEEEECCCCEEEEEcCCCCcEEEEEE--CCCCCccccee--CCEEEEEe
Confidence 4456667788888889999999998887654444 44578889996 88888764
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length | Back alignment and domain information |
|---|
Probab=82.76 E-value=3.4 Score=21.46 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.0
Q ss_pred CeeEEEEcCeEEEEeeCCCeEEEEE
Q 014104 398 PITCLAVGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 398 ~v~~v~~~~~~l~t~~~Dg~v~vw~ 422 (430)
.|.+++....+++.+..-+.+|+|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 6889999999999999999999973
|
The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=82.72 E-value=3.7 Score=22.15 Aligned_cols=26 Identities=46% Similarity=0.668 Sum_probs=21.7
Q ss_pred CeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 331 STLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
..++.++.+|.+..+|.++|+.+.++
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 35778889999999999999887653
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.21 E-value=0.24 Score=43.14 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=47.3
Q ss_pred CCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 21 ~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
+..+..||..++..+++++..+++.+++.|+++...+....++|...|.+.+
T Consensus 5 ~~~le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l 56 (386)
T KOG4408|consen 5 PLGLEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYL 56 (386)
T ss_pred ccchhhcccccceeeecccchhhhhcceeechHHhhhhhccccccccccccc
Confidence 4456789999999999999999999999999999999999999998887775
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=82.07 E-value=31 Score=34.58 Aligned_cols=98 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred eEEEecCCeEEEEECCC-------C-------------eeeEEeecCCCCeEEEEec--CC-CEEEEEeCCCeEEEEeCC
Q 014104 206 AVVGCEDGTARVFDMYS-------R-------------KCSQIIRMHCAPVTSLSLS--ED-QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~-------~-------------~~~~~~~~~~~~i~~~~~~--~~-~~l~~~~~dg~i~vwd~~ 262 (430)
|+.+..||.|.+|.+++ . ++...+. -....+.++++ .. ++||+++....|.||-..
T Consensus 117 Ll~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 117 LLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence 88999999999996531 0 0111222 24578999998 55 677777777777776544
Q ss_pred C--CceeEEEecCCCCCeEEEEEecCC---C---EEEEEeCCCeEEEEeC
Q 014104 263 S--DQRVATLRSTDCTGIKTLCYNPCS---R---LVFAGTTAGYASCWDL 304 (430)
Q Consensus 263 ~--~~~~~~~~~~~~~~v~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 304 (430)
. .+....-...+...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3 121111111144578899997644 2 7778888999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.24 E-value=43 Score=30.49 Aligned_cols=137 Identities=13% Similarity=0.042 Sum_probs=71.2
Q ss_pred eEEEecCCeEEEE-ECCCCeeeEEee-cCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecC---CCCCeEE
Q 014104 206 AVVGCEDGTARVF-DMYSRKCSQIIR-MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST---DCTGIKT 280 (430)
Q Consensus 206 l~~~~~dg~i~vw-d~~~~~~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~ 280 (430)
++..+..|.+..- | ..++.-..+. .....++++.+.++..++..+..|.+.+=....+..-.....+ ....+..
T Consensus 186 ~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~ 264 (334)
T PRK13684 186 YVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLD 264 (334)
T ss_pred EEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceee
Confidence 5555556665532 2 1222222222 2345788899887644444456677654233344332222211 1235788
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee---cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR---ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
+.+.|++..+++ +.+|.+. .....++.-.... .-....+.+. +..+++.++ .+..|.|--|+-
T Consensus 265 v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~-~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 265 LAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIV-FLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred EEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEE-EeCCCceEE-ECCCceEEEecC
Confidence 999988776555 4667554 3444444333322 1223567777 544555544 556788877753
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=81.21 E-value=9.5 Score=37.49 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=28.4
Q ss_pred CeEEEEEec----CCCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 277 GIKTLCYNP----CSRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 277 ~v~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
.+..+++++ +..+|++-+.|+++++||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 455566666 6789999999999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=80.93 E-value=45 Score=32.41 Aligned_cols=113 Identities=11% Similarity=0.037 Sum_probs=69.3
Q ss_pred CCeEEEEecC----C-CEEEEEeCCCeEEEEeCCC-----CceeEEEec----CCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 234 APVTSLSLSE----D-QLIISGSSLGSIAISGLSS-----DQRVATLRS----TDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 234 ~~i~~~~~~~----~-~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
.-|..+.|.| + .-+++.-....|.||-+.. ++.+..-.. ...--...+.|+|....|++-.....-
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 4588899986 2 2455566788999998762 222222111 111134567899999888876665544
Q ss_pred EEEeCCCCc--eeeeeecCCCceEEEEEeeCCCCeEEEEcCC-CeEEEEEcC
Q 014104 300 SCWDLRTMK--SLWETRISPNVVYSLQHLQNDTSTLVVGGID-GVLRVLDQN 348 (430)
Q Consensus 300 ~i~d~~~~~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d-g~i~vwd~~ 348 (430)
.+++++... ....++ ..+.|.|.+ |..||+.|+++-.. =.-++||-.
T Consensus 137 V~~sV~~d~srVkaDi~-~~G~IhCAC-WT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIK-TSGLIHCAC-WTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeeeeeeCCceEEEecc-CCceEEEEE-ecCcCCEEEEEeCCeEEEEEecCc
Confidence 566665432 223343 347788887 99999987665432 345788754
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=80.84 E-value=69 Score=32.61 Aligned_cols=213 Identities=15% Similarity=0.029 Sum_probs=102.8
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC------CeEEEEEcCCCc----ccccCCCCceeeeeEEEE
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG------TRICIWRRNGLR----SVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~------~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~ 201 (430)
.|++-|+.+++.+...-. .....++|.+|++.|+ +..+ ..|..+++.++. .++....+.. .+.....
T Consensus 154 ~l~v~d~~tg~~l~~~i~-~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~-~~~~~~s 231 (686)
T PRK10115 154 GIRFRNLETGNWYPELLD-NVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTF-YVSLHKT 231 (686)
T ss_pred EEEEEECCCCCCCCcccc-CcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCE-EEEEEEc
Confidence 578888888764322211 1224589999998877 4432 357788888773 2344333222 2222223
Q ss_pred -cCCceEEEe---cCCeEEEEECC--CCeeeEEeecCCCCeEEEEecCCCEEEEEeC----CCeEEEEeCCCCceeEEEe
Q 014104 202 -FDPEAVVGC---EDGTARVFDMY--SRKCSQIIRMHCAPVTSLSLSEDQLIISGSS----LGSIAISGLSSDQRVATLR 271 (430)
Q Consensus 202 -~~~~l~~~~---~dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~ 271 (430)
++..++..+ .++.+.+++.. +++....+....+....+. +.++.+..-+. ...|...++........+.
T Consensus 232 ~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~ 310 (686)
T PRK10115 232 TSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELI 310 (686)
T ss_pred CCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEE
Confidence 344433332 24578888843 3332222222222223332 22333332222 2245555555211222333
Q ss_pred cCCC-CCeEEEEEecCCCEEEEEeCCCeEEE--EeCCCCceeeeee-cCCCceEEEEEee--CCCC-eEEEEc---CCCe
Q 014104 272 STDC-TGIKTLCYNPCSRLVFAGTTAGYASC--WDLRTMKSLWETR-ISPNVVYSLQHLQ--NDTS-TLVVGG---IDGV 341 (430)
Q Consensus 272 ~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i--~d~~~~~~~~~~~-~~~~~v~~l~~~s--~~~~-~l~s~~---~dg~ 341 (430)
.+.. ..+..+.+. .+.++++...+|.-++ ++...+ .+..+. .....+..+. .+ +++. ++++.+ .-+.
T Consensus 311 ~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ss~~~P~~ 387 (686)
T PRK10115 311 PPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIA-YNPEPETSRLRYGYSSMTTPDT 387 (686)
T ss_pred CCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeec-ccCCCCCceEEEEEecCCCCCE
Confidence 3222 367878886 3345556666776544 454332 333333 2222233232 33 3333 444433 3478
Q ss_pred EEEEEcCCCc
Q 014104 342 LRVLDQNTGE 351 (430)
Q Consensus 342 i~vwd~~~~~ 351 (430)
+..+|+.+++
T Consensus 388 ~y~~d~~~~~ 397 (686)
T PRK10115 388 LFELDMDTGE 397 (686)
T ss_pred EEEEECCCCc
Confidence 8999988765
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=80.38 E-value=46 Score=30.32 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=14.7
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCc
Q 014104 286 CSRLVFAGTTA-----GYASCWDLRTMK 308 (430)
Q Consensus 286 ~~~~l~~~~~d-----g~i~i~d~~~~~ 308 (430)
++++++.|+.+ ..+.+||+.+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 55666666643 247888887643
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=80.33 E-value=47 Score=30.34 Aligned_cols=16 Identities=0% Similarity=-0.035 Sum_probs=11.8
Q ss_pred EEEEcCeEEEEeeCCC
Q 014104 401 CLAVGMKKVVTTHNSK 416 (430)
Q Consensus 401 ~v~~~~~~l~t~~~Dg 416 (430)
++..+++.++.||.+.
T Consensus 317 ~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 317 SVSWNNGVLLIGGENS 332 (346)
T ss_pred EEEcCCEEEEEeccCC
Confidence 4456888899998763
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=80.12 E-value=58 Score=31.33 Aligned_cols=133 Identities=11% Similarity=0.040 Sum_probs=63.2
Q ss_pred eEEEEECCCCeeeEEeecC---CC--C-eEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeEEEec---CCCCCeE
Q 014104 214 TARVFDMYSRKCSQIIRMH---CA--P-VTSLSLSEDQLIISGSSL-----GSIAISGLSSDQRVATLRS---TDCTGIK 279 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~---~~--~-i~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~---~~~~~v~ 279 (430)
.+.+||+.+.+-. .+... .. . -.+++...+.+.+.|+.+ ..+..+|+.+.+-...-.. .....-.
T Consensus 194 ~v~~yD~~~~~W~-~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h 272 (470)
T PLN02193 194 HLYVFDLETRTWS-ISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFH 272 (470)
T ss_pred cEEEEECCCCEEE-eCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccce
Confidence 4778888765422 11110 00 0 112333345666667654 3688899887654321110 0111112
Q ss_pred EEEEecCCCEEEEEeCCC-----eEEEEeCCCCceeeee-----ecCCCceEEEEEeeCCCCeEEEEcCC----CeEEEE
Q 014104 280 TLCYNPCSRLVFAGTTAG-----YASCWDLRTMKSLWET-----RISPNVVYSLQHLQNDTSTLVVGGID----GVLRVL 345 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~-----~~~~~~v~~l~~~s~~~~~l~s~~~d----g~i~vw 345 (430)
+++. -++++.+.|+.++ .+..||+.+.+-...- ...... ..++ ..+++..+.++.+ ..+.+|
T Consensus 273 ~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~--~~~gkiyviGG~~g~~~~dv~~y 348 (470)
T PLN02193 273 SMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLE--VVQGKVWVVYGFNGCEVDDVHYY 348 (470)
T ss_pred EEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEE--EECCcEEEEECCCCCccCceEEE
Confidence 2222 2556666666543 4677887765422110 000111 1122 1256666667655 457888
Q ss_pred EcCCCc
Q 014104 346 DQNTGE 351 (430)
Q Consensus 346 d~~~~~ 351 (430)
|+.+.+
T Consensus 349 D~~t~~ 354 (470)
T PLN02193 349 DPVQDK 354 (470)
T ss_pred ECCCCE
Confidence 887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 430 | ||||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 2e-04 |
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.95 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.92 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.91 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.91 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.91 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.91 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.89 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.89 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.88 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.88 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.85 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.84 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.84 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.83 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.81 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.8 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.79 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.79 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.78 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.77 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.77 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.76 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.76 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.76 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.75 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.73 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.73 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.72 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.72 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.72 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.7 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.67 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.66 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.65 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.64 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.63 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.62 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.62 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.62 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.61 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.61 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.61 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.6 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.6 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.6 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.59 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.58 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.58 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.57 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.57 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.57 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.57 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.56 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.55 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.54 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.54 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.53 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.52 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.51 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.5 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.49 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.48 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.48 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.48 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.48 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.48 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.46 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.45 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.42 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.42 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.42 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.42 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.36 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.35 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.34 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.34 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.33 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.32 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 99.32 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.32 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.32 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.32 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.31 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.27 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.26 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.26 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.25 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.24 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.22 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.22 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.21 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 99.2 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.2 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.17 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.16 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.16 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.14 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.11 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.09 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.06 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.06 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.05 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.05 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.05 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.01 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.99 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 98.97 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.95 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.95 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.94 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.91 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.88 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.87 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.86 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.84 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 98.79 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.79 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.63 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.61 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.57 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.55 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.52 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.49 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.49 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.44 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.42 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.4 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.32 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.3 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.24 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.23 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.2 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.18 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.17 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.15 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.13 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.08 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.06 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.04 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.02 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.02 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.01 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.97 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.94 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.9 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.84 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.82 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.82 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.79 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.76 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.76 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 97.74 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.74 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.73 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.73 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.72 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.72 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.67 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.64 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.63 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.6 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.57 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.57 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.55 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.54 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.53 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.46 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.43 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.43 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.42 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.31 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 97.26 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.19 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.12 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.09 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.09 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.07 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.06 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.02 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 96.98 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.93 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.79 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.78 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.66 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 96.56 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.55 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.17 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.98 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.5 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 95.48 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.24 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 95.18 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.98 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 93.96 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.61 | |
| 4hfx_A | 97 | Transcription elongation factor B polypeptide 3; s | 92.74 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 92.59 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.44 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 89.08 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 87.88 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 87.82 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 87.81 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 86.92 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 85.32 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 84.11 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 82.41 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 82.21 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 82.11 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 80.9 |
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-51 Score=384.57 Aligned_cols=398 Identities=15% Similarity=0.195 Sum_probs=325.0
Q ss_pred CCCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCCCCC------------CCCchHHH
Q 014104 18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNT------------SGSSMRLH 85 (430)
Q Consensus 18 ~~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~~~------------~~~~~~~~ 85 (430)
....+++..||.|++.+||+||++.+|.++++|||+|+.++.++.+|+.+|++.+...+. ...+|+..
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~ 92 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSA 92 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHH
T ss_pred cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHH
Confidence 446799999999999999999999999999999999999999999999999776532211 22344443
Q ss_pred HHHHHcccchhhcccCCE-eEEEEeccccce-eEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecC
Q 014104 86 LEELAMKHHRFALEEGRI-DIDQWKAHSVGV-DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFD 162 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~-~~~~l~~h~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~ 162 (430)
+.. ......+|..|.. ....+.+|.+.| .++.+++++|++|+.||+|++||+.+++.+..+.+| ..+..++++
T Consensus 93 ~~~--~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 93 YIR--QHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp HHH--HHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--
T ss_pred Hhh--hhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--
Confidence 222 1223466777665 567899999875 677777779999999999999999999999998876 345556665
Q ss_pred CCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEe
Q 014104 163 ESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241 (430)
Q Consensus 163 ~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 241 (430)
++.++ ++.|+.|++||+++++..... .++...+.++.+.++.+++|+.||.|++||+.+++.+..+.+|...|.++++
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIHTL-YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEE-CCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 67777 889999999999988754322 2333345677777888999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE
Q 014104 242 SEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY 321 (430)
Q Consensus 242 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 321 (430)
.++.+++|+.||.|++||+++++.+..+.+ |...|.++.| ++.++++|+.|+.|++||+++++.+..+.+|...+.
T Consensus 248 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~ 323 (445)
T 2ovr_B 248 -DGRRVVSGAYDFMVKVWDPETETCLHTLQG-HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 323 (445)
T ss_dssp -CSSCEEEEETTSCEEEEEGGGTEEEEEECC-CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE
T ss_pred -CCCEEEEEcCCCEEEEEECCCCcEeEEecC-CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE
Confidence 567899999999999999999999999987 8889999999 789999999999999999999999999999999898
Q ss_pred EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe---ccCcc--------eeeeccCCceEEEeecccccCCccccc
Q 014104 322 SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM---DIGSA--------SSSSNKVSGVIERNEGRRLSAGCCIDR 390 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~--------~~~~~s~d~~v~~~~~~~~~~~~~~~~ 390 (430)
++. + ++.++++|+.||.|++||+.+++.+..+.. |...+ .+++++.||.+.+|+......-..+..
T Consensus 324 ~~~-~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~ 400 (445)
T 2ovr_B 324 GME-L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400 (445)
T ss_dssp EEE-E--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEE
T ss_pred EEE-E--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeeeec
Confidence 877 5 577999999999999999999999988876 43333 678889999999887654322122211
Q ss_pred -CCCCCCCCeeEEEE--cCeEEEEeeCCCe----EEEEEecCCC
Q 014104 391 -IPKTIRPPITCLAV--GMKKVVTTHNSKY----IRLWKFNYSD 427 (430)
Q Consensus 391 -~~~~h~~~v~~v~~--~~~~l~t~~~Dg~----v~vw~~~~~~ 427 (430)
....|...|++++| ++.++++|+.||+ |.|||++...
T Consensus 401 ~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 401 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 12467889999999 4778999999998 9999998653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=381.05 Aligned_cols=364 Identities=22% Similarity=0.306 Sum_probs=294.3
Q ss_pred CCCCCccCCcHH----HHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCC------------------CC
Q 014104 19 KPRATIESLNGD----IICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGF------------------SN 76 (430)
Q Consensus 19 ~~~~~~~~Lp~e----~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~------------------~~ 76 (430)
...|++..||.| ++++||+||++.+|+++++|||+|+.++.++.+|+.+|.+.... .+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 85 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKN 85 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC--
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhcc
Confidence 347899999999 99999999999999999999999999999999999999886421 00
Q ss_pred -C------CCCchHHHHHHHH--cccchhhcccCCEeEEEEe---ccccceeEEEecCCeEEEEeCCCeEEEEecCCCee
Q 014104 77 -T------SGSSMRLHLEELA--MKHHRFALEEGRIDIDQWK---AHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC 144 (430)
Q Consensus 77 -~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~---~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 144 (430)
+ ....++..+..+. ......+|..|......+. +|...|.|+.+.++++++|+.||+|++||+.+++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~ 165 (435)
T 1p22_A 86 KPPDGNAPPNSFYRALYPKIIQDIETIESNWRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLEC 165 (435)
T ss_dssp -------CCSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCE
T ss_pred CCCCCCCCchhhHHhhhhhhhcchhHHHhhhccCCccceEEecccCCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeE
Confidence 0 1111122222221 1233567777776555554 56678999999777999999999999999999999
Q ss_pred EEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC
Q 014104 145 VEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR 223 (430)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 223 (430)
+..+.+|.. .+.++.++++.++ ++.||.|++||+++++..... .++...+.++.+.+..+++|+.||.|++||+.++
T Consensus 166 ~~~~~~h~~-~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~ 243 (435)
T 1p22_A 166 KRILTGHTG-SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTL-IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 243 (435)
T ss_dssp EEEECCCSS-CEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEE-CCCCSCEEEEECCTTEEEEEETTSCEEEEECSSS
T ss_pred EEEEcCCCC-cEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEE-cCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCC
Confidence 999887633 3344455888888 889999999999988753222 2333445677777778999999999999999988
Q ss_pred eee---EEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 224 KCS---QIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 224 ~~~---~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
+.. ..+.+|...|.++++ .++++++|+.||.|++||+++++.+..+.+ |...|.++.+ +++++++|+.||.|+
T Consensus 244 ~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 244 TDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-HKRGIACLQY--RDRLVVSGSSDNTIR 319 (435)
T ss_dssp SCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEE--ETTEEEEEETTSCEE
T ss_pred CCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEEEECCcCcEEEEEcC-CCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 765 677889999999999 567999999999999999999999999987 8889999999 468999999999999
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc---------eEEEEEeccCcceeeeccCC
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE---------VLSRCVMDIGSASSSSNKVS 371 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~---------~~~~~~~~~~~~~~~~~s~d 371 (430)
+||+++++++..+.+|...|.++. + ++.+|++|+.||.|++||+.+++ ++..+.
T Consensus 320 iwd~~~~~~~~~~~~h~~~v~~~~-~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-------------- 382 (435)
T 1p22_A 320 LWDIECGACLRVLEGHEELVRCIR-F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-------------- 382 (435)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEE-C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC--------------
T ss_pred EEECCCCCEEEEEeCCcCcEEEEE-e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc--------------
Confidence 999999999999999999999998 6 78999999999999999997655 444443
Q ss_pred ceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCC
Q 014104 372 GVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 372 ~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+|...|++++|++.+|++|+.||+|++||+.++.
T Consensus 383 ----------------------~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 383 ----------------------EHSGRVFRLQFDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp ----------------------CCSSCCCCEEECSSCEEECCSSSEEEEEC-----
T ss_pred ----------------------CCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCCC
Confidence 4667999999999999999999999999998764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=370.38 Aligned_cols=394 Identities=18% Similarity=0.182 Sum_probs=308.1
Q ss_pred CCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCC-chhHHHHHHHhcCCCCCC-------------CCchH-H
Q 014104 20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINR-CKLLQLLYCKLHGFSNTS-------------GSSMR-L 84 (430)
Q Consensus 20 ~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~-~~lw~~~~~~~~~~~~~~-------------~~~~~-~ 84 (430)
.++++..||.|++++||+||++++|+++++|||.|+.++.+ +.+|+.+|.+........ ....+ .
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDR 90 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHH
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchh
Confidence 56899999999999999999999999999999999999998 899999998775433220 00001 1
Q ss_pred HHHH-HHcccchhhcccCCE--eEEEEeccccce-eEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEE
Q 014104 85 HLEE-LAMKHHRFALEEGRI--DIDQWKAHSVGV-DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDF 159 (430)
Q Consensus 85 ~~~~-~~~~~~~~~~~~~~~--~~~~l~~h~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~ 159 (430)
+... .........|..+.. ....+.+|.+.| .++.+++++|++|+.||+|++||+.+++.+..+.+| ..+..++|
T Consensus 91 ~~~~~~~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~ 170 (464)
T 3v7d_B 91 LRLSFLENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY 170 (464)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred hHHHHHHhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEE
Confidence 1110 011112244555543 677899999885 677787789999999999999999999999999876 56777999
Q ss_pred ecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEE--cCCceEEEecCCeEEEEECCCCee---------
Q 014104 160 DFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKC--------- 225 (430)
Q Consensus 160 ~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~--------- 225 (430)
++++ .++ ++.|+.|++||+++++.. +..+... +..+.+.+ .+..+++|+.||.|++||+.+++.
T Consensus 171 ~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~ 248 (464)
T 3v7d_B 171 AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST-VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248 (464)
T ss_dssp CSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC
T ss_pred cCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc-cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC
Confidence 9888 555 899999999999988743 3333333 33445554 334599999999999999987652
Q ss_pred --------------eEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE
Q 014104 226 --------------SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 226 --------------~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 291 (430)
+..+.+|...|.++.. .++++++|+.|+.|++||+++++.+..+.+ |...|.+++|+|++++++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~ 326 (464)
T 3v7d_B 249 YPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCI 326 (464)
T ss_dssp SSEEESCGGGCTTEEEEECCCSSCEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEE
T ss_pred cceEeeccCCCeEEEEEccCccceEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEE
Confidence 4567788899988854 357899999999999999999999999987 888999999999999999
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec---------cCc
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD---------IGS 362 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~---------~~~ 362 (430)
+|+.||.|++||+++++++..+.+|...|.++. ++ +.+|++++.||.|++||+.++......... ..+
T Consensus 327 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~-~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 327 SASMDTTIRIWDLENGELMYTLQGHTALVGLLR-LS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 403 (464)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-EC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECS
T ss_pred EEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEE-Ec--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCC
Confidence 999999999999999999999999999999998 75 689999999999999999988766655321 122
Q ss_pred ceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeE-EEEeeCCCeEEEEEec
Q 014104 363 ASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKK-VVTTHNSKYIRLWKFN 424 (430)
Q Consensus 363 ~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-l~t~~~Dg~v~vw~~~ 424 (430)
..+++++ ||.+.+|+. ..+..+......|...|++++|+++. +++++.||.+.+|-++
T Consensus 404 ~~l~~~~-dg~i~iwd~---~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ld 462 (464)
T 3v7d_B 404 NILVSGS-ENQFNIYNL---RSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 462 (464)
T ss_dssp SEEEEEE-TTEEEEEET---TTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CEEEEec-CCeEEEEEC---CCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence 2455555 777777654 34555666567789999999998665 5556677776665543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=344.01 Aligned_cols=289 Identities=15% Similarity=0.214 Sum_probs=253.8
Q ss_pred hcccCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 97 ALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 97 ~~~~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
.|.........+.+|.++|++++| +++ +|++|+.||+|++||+.+++....+.+| ..+..++|+++++.|+ ++.|+
T Consensus 93 ~~~~~~~~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~ 172 (410)
T 1vyh_C 93 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 172 (410)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccccCCCceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCC
Confidence 344444456678999999999999 455 9999999999999999999999999877 5677899999999998 88999
Q ss_pred eEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEE
Q 014104 173 RICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 173 ~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~ 249 (430)
.|++||+.+.+.+ +..+... +..+++.+.+..+++|+.|++|++||+++++++..+.+|...|.++.++|+ .++++
T Consensus 173 ~i~iwd~~~~~~~~~~~~h~~~-V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s 251 (410)
T 1vyh_C 173 TIKLWDFQGFECIRTMHGHDHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251 (410)
T ss_dssp CCCEEETTSSCEEECCCCCSSC-EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEeCCCCceeEEEcCCCCC-EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEE
Confidence 9999999887643 3333332 344556666777999999999999999999999999999999999999976 89999
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC--------------------CCEEEEEeCCCeEEEEeCCCCce
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC--------------------SRLVFAGTTAGYASCWDLRTMKS 309 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~i~d~~~~~~ 309 (430)
|+.|++|++||+.+++....+.. |...|.+++|+|+ |.+|++|+.|+.|++||++++++
T Consensus 252 ~s~D~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 252 CSNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp EETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred EcCCCeEEEEECCCCceeeEecC-CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence 99999999999999999999987 8889999999996 67899999999999999999999
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccc
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCID 389 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~ 389 (430)
+..+.+|...|.+++ |+|++++|++|+.||.|++||+.+++++..+..|
T Consensus 331 ~~~~~~h~~~v~~v~-~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h------------------------------ 379 (410)
T 1vyh_C 331 LMTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH------------------------------ 379 (410)
T ss_dssp EEEEECCSSCEEEEE-ECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC------------------------------
T ss_pred EEEEECCCCcEEEEE-EcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------------------------------
Confidence 999999999999999 9999999999999999999999999988888654
Q ss_pred cCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 390 RIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 390 ~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
...|++++| ++.+|+||+.||+|+||++.
T Consensus 380 ------~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 380 ------EHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ------SSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ------CCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 458999999 47789999999999999863
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=328.07 Aligned_cols=280 Identities=17% Similarity=0.215 Sum_probs=242.4
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
....+|.+|.+.|.+++| +++ +|++|+.||+|++||..+++.+..+..+ ..+..++|+|++++++ ++.|+.+++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 457789999999999999 455 9999999999999999999999888876 4577799999999999 88999999999
Q ss_pred cCCCcc------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 179 RNGLRS------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 179 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+.+... .+..+.+.+ ..+.+.+ +..+++++.|++|++||+++++++..+.+|.+.|.+++|+|+ .++++|+
T Consensus 126 ~~~~~~~~~~~~~~~~h~~~v-~~~~~~~-~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 126 LKTREGNVRVSRELAGHTGYL-SCCRFLD-DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp TTTCSBSCEEEEEEECCSSCE-EEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CccCCCcceeEEEecCCCccE-EEEEECC-CCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 987542 122333322 2233333 334999999999999999999999999999999999999986 7999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec--CCCceEEEEEeeCC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI--SPNVVYSLQHLQND 329 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~s~~ 329 (430)
.|+.|++||+++++.+..+.+ |...|.+++|+|++++|++|+.||+|++||+++++.+..+.. +...|.+++ |+|+
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~ 281 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-FSKS 281 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE-ECTT
T ss_pred CCCcEEEEECCCCeeEEEEcC-CcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEE-ECCC
Confidence 999999999999999999987 888999999999999999999999999999999887766653 235799998 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
+++|++|+.||.|++||+.+++.+..+.+ |...|++++| ++.
T Consensus 282 g~~l~~g~~d~~i~vwd~~~~~~~~~~~~------------------------------------h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 282 GRLLLAGYDDFNCNVWDALKADRAGVLAG------------------------------------HDNRVSCLGVTDDGM 325 (340)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEEC------------------------------------CSSCEEEEEECTTSS
T ss_pred CCEEEEECCCCeEEEEEcccCcEeeEeec------------------------------------CCCcEEEEEEcCCCC
Confidence 99999999999999999999998888765 4458899998 578
Q ss_pred EEEEeeCCCeEEEEE
Q 014104 408 KVVTTHNSKYIRLWK 422 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~ 422 (430)
+|+||+.||+|+|||
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 899999999999996
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=323.96 Aligned_cols=283 Identities=16% Similarity=0.194 Sum_probs=248.2
Q ss_pred eEEEEeccccceeEEEec-----CC-eEEEEeCCCeEEEEecCCCee--EEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 104 DIDQWKAHSVGVDQCRMK-----RG-LILTGVGDKVMRLWSLEGYKC--VEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-----~~-~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
..+.+.+|.+.|++++|. ++ +|+||+.|++|++||+.+++. ...+.+| ..+..+++++++..++ ++.|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 456778999999999993 23 899999999999999987654 3456665 5677799999999998 888999
Q ss_pred EEEEEcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 174 ICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
|++||+.+++.+.... .......+++.+++..+++++.||.|++||+++++....+..|...|.+++|+|+ +++++|+
T Consensus 104 i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~ 183 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA 183 (321)
T ss_dssp EEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc
Confidence 9999999887543221 1222345677778888999999999999999999999999999999999999986 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
.|+.|++||+++++.+..+.+ |..+|.+++|+|++++|++|+.|+.|++||+++++.+..+.+|...|.+++ |+|+++
T Consensus 184 ~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~-~sp~~~ 261 (321)
T 3ow8_A 184 IDGIINIFDIATGKLLHTLEG-HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVA-FCPDDT 261 (321)
T ss_dssp TTSCEEEEETTTTEEEEEECC-CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSS
T ss_pred CCCeEEEEECCCCcEEEEEcc-cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEE-ECCCCC
Confidence 999999999999999999987 888999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEE
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKV 409 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l 409 (430)
+|++++.|++|++||+.+++++.++.. |...|++++| ++++|
T Consensus 262 ~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------h~~~v~~v~~s~~g~~l 305 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGTRTCVHTFFD------------------------------------HQDQVWGVKYNGNGSKI 305 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECC------------------------------------CSSCEEEEEECTTSSEE
T ss_pred EEEEEeCCCcEEEEeCCCCEEEEEEcC------------------------------------CCCcEEEEEECCCCCEE
Confidence 999999999999999999999888865 4458999999 57899
Q ss_pred EEeeCCCeEEEEEec
Q 014104 410 VTTHNSKYIRLWKFN 424 (430)
Q Consensus 410 ~t~~~Dg~v~vw~~~ 424 (430)
++++.||+|+|||+.
T Consensus 306 ~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 306 VSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEETTCCEEEEECC
T ss_pred EEEeCCCeEEEEeCC
Confidence 999999999999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=333.71 Aligned_cols=295 Identities=19% Similarity=0.228 Sum_probs=247.9
Q ss_pred CCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
.....++|.||.+.|++++| +++ +|+||+.||+|++||+.+++....+..| ..+..++|+|++++++ ++.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 34577899999999999999 555 9999999999999999999999999876 4567799999999999 888999999
Q ss_pred EEcCCCc---------ccccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEe-----ecCCCCeEEEEe
Q 014104 177 WRRNGLR---------SVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQII-----RMHCAPVTSLSL 241 (430)
Q Consensus 177 wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~~~~ 241 (430)
||+.+.. ..+..|.+.+ ..+.+.+.++ .+++|+.|++|++||+.+++.+..+ .+|...|.++++
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~~~v-~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHKGYA-SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCSSCC-CCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EECCCCccccCCccceeeccCCCcce-EEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 9987532 1223333332 2233333333 4999999999999999999988877 678999999999
Q ss_pred cC-C-CEEEEEeCCCeEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-
Q 014104 242 SE-D-QLIISGSSLGSIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP- 317 (430)
Q Consensus 242 ~~-~-~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~- 317 (430)
++ + +++++|+.|++|++||++ .++.+..+.+ |...|.+++|+|++++|++|+.||+|++||+++++.+..+..+.
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~ 292 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG-HEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD 292 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC-CSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCcceEEECC-cCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc
Confidence 85 4 799999999999999998 4577788877 88899999999999999999999999999999998887766543
Q ss_pred ------CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccC
Q 014104 318 ------NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391 (430)
Q Consensus 318 ------~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~ 391 (430)
..|.+++ |+|+|++|++|+.||.|++||+.+++.+..+.. .
T Consensus 293 ~~~~~~~~v~~~~-~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~--------------------------------~ 339 (380)
T 3iz6_a 293 RNDNELPIVTSVA-FSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT--------------------------------L 339 (380)
T ss_dssp SSCCSSCSCSEEE-ECSSSSEEEEECTTSCEEEEETTTCCEEEEECC--------------------------------S
T ss_pred ccccccCceEEEE-ECCCCCEEEEEECCCCEEEEECCCCceEEEEec--------------------------------c
Confidence 2488998 999999999999999999999998888776632 1
Q ss_pred CCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCcCC
Q 014104 392 PKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDKYL 430 (430)
Q Consensus 392 ~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~~~ 430 (430)
..+|...|++++| ++.+|+||+.||+|+||++...++++
T Consensus 340 ~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~iv 380 (380)
T 3iz6_a 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRKIV 380 (380)
T ss_dssp CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSSCC
T ss_pred cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcccC
Confidence 2457889999999 68999999999999999999877653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-43 Score=319.97 Aligned_cols=281 Identities=16% Similarity=0.165 Sum_probs=242.7
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
....+|.||.+.|++++| +++ +|+||+.||+|++||..+++....+..+ ..+..++|+|++..++ ++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 457789999999999999 555 9999999999999999998888888765 5577899999999999 88899999999
Q ss_pred cCCCcc--------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC---CEE
Q 014104 179 RNGLRS--------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED---QLI 247 (430)
Q Consensus 179 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~---~~l 247 (430)
+..... .+..|.+. ...+.+.+.+..+++++.|++|++||+++++++..+.+|...|.+++++|+ +.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNY-LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSC-EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EeccccccccccceeeeccCCc-EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 865421 12223322 334555556667999999999999999999999999999999999999862 699
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC--CCceEEEEE
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS--PNVVYSLQH 325 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~l~~ 325 (430)
++|+.||.|++||+++++++..+.. |...|.+++|+|++++|++|+.|++|++||+++++.+..+..+ ...+.+++
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~- 291 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFET-HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVD- 291 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE-
T ss_pred EEEeCCCeEEEEECCCCcEEEEecC-CCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEE-
Confidence 9999999999999999999999987 8889999999999999999999999999999988777666543 34688998
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV- 404 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~- 404 (430)
|+|++++|++|+.|+.|++||+.+++.+..+.. |...|++++|
T Consensus 292 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~------------------------------------h~~~v~~l~~s 335 (354)
T 2pbi_B 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFG------------------------------------HENRVSTLRVS 335 (354)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCSEEEEECC------------------------------------CSSCEEEEEEC
T ss_pred EeCCCCEEEEEECCCcEEEEECCCCceEEEEEC------------------------------------CCCcEEEEEEC
Confidence 999999999999999999999999988877754 5558999998
Q ss_pred -cCeEEEEeeCCCeEEEEE
Q 014104 405 -GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 405 -~~~~l~t~~~Dg~v~vw~ 422 (430)
++++|++|+.||+|+||+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 588999999999999996
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=311.99 Aligned_cols=284 Identities=16% Similarity=0.198 Sum_probs=243.9
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
..++|.+|.+.|.+++| |++ +|++|+.||+|++||+.+++.+..+..+ ..+..++|+++++.|+ ++.|+.|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45689999999999999 566 9999999999999999999999999876 4577799999999999 889999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecC-C-CEEEEEeCCC
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg 254 (430)
++++.+ +..|... +..+++.+.++.+++|+.||+|++||++++ .....+.+|...|.+++|+| + ..+++|+.|+
T Consensus 85 ~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~ 163 (304)
T 2ynn_A 85 NTGEKVVDFEAHPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (304)
T ss_dssp TTCCEEEEEECCSSC-EEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTS
T ss_pred CCCcEEEEEeCCCCc-EEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCC
Confidence 988753 3444443 345666677778999999999999999887 55677889999999999997 4 7899999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNP--CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
+|++||++++.....+..++...+..+.|+| ++++|++|+.|++|++||+++++++..+.+|...|.+++ |+|++++
T Consensus 164 ~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~-~~p~~~~ 242 (304)
T 2ynn_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPI 242 (304)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEE-ECSSSSE
T ss_pred eEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEE-ECCCCCE
Confidence 9999999988887777766777899999987 678999999999999999999999999999999999999 9999999
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--C-e-E
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--M-K-K 408 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~-~-~ 408 (430)
|++|+.||+|++||+.++++++++..+. ..+.++++. + . +
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~ 286 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGL------------------------------------ERSWCIATHPTGRKNY 286 (304)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCSS------------------------------------SSEEEEEECTTCGGGC
T ss_pred EEEEcCCCeEEEEECCCCceeeeccCCC------------------------------------ccEEEEEECCCCCceE
Confidence 9999999999999999999998886543 478888872 3 2 5
Q ss_pred EEEeeCCCeEEEEEecCC
Q 014104 409 VVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 409 l~t~~~Dg~v~vw~~~~~ 426 (430)
+++|++|| +.+|++...
T Consensus 287 ~asg~~~g-~~~~~~~~~ 303 (304)
T 2ynn_A 287 IASGFDNG-FTVLSLGND 303 (304)
T ss_dssp EEEEETTE-EEEEECC--
T ss_pred EEEecCCc-eEEEEeccC
Confidence 77777665 678887654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=335.37 Aligned_cols=248 Identities=15% Similarity=0.215 Sum_probs=206.3
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeC----C
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIG----T 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~----~ 172 (430)
.....|.+|.+.|++++| |+| +|++|+.|++|+|||+.+++ ....+..+ ..+..++|+|+++.|+ ++.+ +
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 456788999999999999 566 99999999999999987543 34556654 5678899999999999 4433 3
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
.|++||.......+..|... +..+++.+.++. +++|+.|++|++||..+++++..+.+|...|.+++|+|+ +++++|
T Consensus 130 ~v~~wd~~~~~~~l~gh~~~-v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~ 208 (611)
T 1nr0_A 130 HVFLFDTGTSNGNLTGQARA-MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208 (611)
T ss_dssp EEEETTTCCBCBCCCCCSSC-EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEeeCCCCcceecCCCCC-ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEE
Confidence 68888754433444444443 344566666664 999999999999999999999999999999999999986 899999
Q ss_pred eCCCeEEEEeCCCCceeEEEec------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee-------------
Q 014104 251 SSLGSIAISGLSSDQRVATLRS------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW------------- 311 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------- 311 (430)
+.|++|++||+.+++.+..+.. .|...|.+++|+|+|++|++++.|++|++||+++++.+.
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 9999999999999999888842 488899999999999999999999999999998776543
Q ss_pred ------------------------------eeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 312 ------------------------------ETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 312 ------------------------------~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.+.+|...|.+++ |+|+|++|++++.|++|++||+.+++.
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~-~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS-SSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE-EeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 2347888999999 999999999999999999999886644
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=304.66 Aligned_cols=289 Identities=16% Similarity=0.216 Sum_probs=241.6
Q ss_pred eEEEEeccccceeEEEec-C--CeEEEEeCCCeEEEEecCC-----CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 104 DIDQWKAHSVGVDQCRMK-R--GLILTGVGDKVMRLWSLEG-----YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~--~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
...+|.||.+.|.+++|+ + .+|+||+.|++|++||+.+ +..+..+.+| ..+..++|++++++++ ++.|+.
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 456899999999999994 3 3999999999999999864 3456677776 5677799999999999 888999
Q ss_pred EEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-------
Q 014104 174 ICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED------- 244 (430)
Q Consensus 174 i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~------- 244 (430)
|++||+++++.. +..+... +..+++.+.+..+++|+.|++|++||++ ++++..+.+|...|.++.+.|.
T Consensus 89 v~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHKSD-VMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEEETTTTEEEEEEECCSSC-EEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEEECCCCCeeEEEccCCCc-EEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 999999988743 3444443 2344555566679999999999999995 6678888999999999999874
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 324 (430)
..+++++.|+.|++||+++++....+.+ |...|.+++|+|+|++|++|+.||.|++||+++++.+..+..+ ..|.+++
T Consensus 167 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~ 244 (319)
T 3frx_A 167 VTIISAGNDKMVKAWNLNQFQIEADFIG-HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLA 244 (319)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEECC-CCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEEEE
T ss_pred cEEEEEeCCCEEEEEECCcchhheeecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEEEE
Confidence 3799999999999999999999888887 8889999999999999999999999999999999998888765 6899999
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV 404 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 404 (430)
|+|++.+|++++.+ .+++|++..+..+..+..+.. .....|...+.+++|
T Consensus 245 -~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 245 -FSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFA----------------------------GYSKAAEPHAVSLAW 294 (319)
T ss_dssp -ECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCT----------------------------TCCGGGCCCEEEEEE
T ss_pred -EcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccc----------------------------ccccCcCcceeEEEE
Confidence 99999999888754 599999998777766643221 111235668899999
Q ss_pred --cCeEEEEeeCCCeEEEEEecCC
Q 014104 405 --GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 405 --~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
||++|++|+.||.|+|||+.++
T Consensus 295 spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 295 SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCCCEEEEeecCceEEEEEEeec
Confidence 6999999999999999999865
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=312.40 Aligned_cols=278 Identities=15% Similarity=0.163 Sum_probs=224.0
Q ss_pred eccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC------------CeeEEeeecCCceeEEEEecCCCEEEEEeCCeE
Q 014104 109 KAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG------------YKCVEEYSLPNAASLVDFDFDESKIVGLIGTRI 174 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i 174 (430)
..|...|.+++| ++| +|++++ |+++++||... +.....+.....+..++|++++..+.++.||.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 357778999999 677 666665 77888887321 122233444566888999999766669999999
Q ss_pred EEEEcCCCcccc------cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CE
Q 014104 175 CIWRRNGLRSVF------PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QL 246 (430)
Q Consensus 175 ~vwd~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~ 246 (430)
++||+++++... ..|.+. +..+++.+++..|++|+.||+|++||+++++++..+.+|.+.|.+++|+++ .+
T Consensus 106 ~lWd~~~~~~~~~~~~~~~~H~~~-V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~ 184 (344)
T 4gqb_B 106 ELWELDENETLIVSKFCKYEHDDI-VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184 (344)
T ss_dssp EEEEECTTSSCEEEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred EEEeccCCCceeEeeccccCCCCC-EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence 999999876432 123333 345666667778999999999999999999999999999999999999975 58
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEecC-CCCCeEEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE
Q 014104 247 IISGSSLGSIAISGLSSDQRVATLRST-DCTGIKTLCYNPC-SRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ 324 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~ 324 (430)
+++|+.|++|++||+++++....+... +...+.+++|+|+ +++|++|+.||.|++||+++++++..+.+|...|++++
T Consensus 185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~ 264 (344)
T 4gqb_B 185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV 264 (344)
T ss_dssp EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEE
T ss_pred eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 899999999999999999988877532 4457999999985 56889999999999999999999999999999999999
Q ss_pred EeeCCC-CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 325 HLQNDT-STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 325 ~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
|+|++ ++|++|+.|++|+|||+.+++++. + .+|...|++++
T Consensus 265 -fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~------------------------------------~~H~~~V~~v~ 306 (344)
T 4gqb_B 265 -FSPHSVPFLASLSEDCSLAVLDSSLSELFR-S------------------------------------QAHRDFVRDAT 306 (344)
T ss_dssp -ECSSSSCCEEEEETTSCEEEECTTCCEEEE-E------------------------------------CCCSSCEEEEE
T ss_pred -EccCCCeEEEEEeCCCeEEEEECCCCcEEE-E------------------------------------cCCCCCEEEEE
Confidence 99998 579999999999999999886543 3 24677999999
Q ss_pred Ec--C-eEEEEeeCCCeEEEEEecCC
Q 014104 404 VG--M-KKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 404 ~~--~-~~l~t~~~Dg~v~vw~~~~~ 426 (430)
|+ + .+|+|||.||+|++|++.++
T Consensus 307 ~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 307 WSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 93 4 46789999999999999765
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=315.06 Aligned_cols=281 Identities=15% Similarity=0.151 Sum_probs=226.7
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeC------CCeEEEEecCCCeeE-----EeeecCCceeEEEEecCCCEEEEEeCCe
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVG------DKVMRLWSLEGYKCV-----EEYSLPNAASLVDFDFDESKIVGLIGTR 173 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~------dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (430)
...+|.+.|++++| ||| +|++|+. |+.|++|+..++... ....+...+..++|+|++..++++.|+.
T Consensus 37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~ 116 (357)
T 4g56_B 37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGA 116 (357)
T ss_dssp ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSC
T ss_pred CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCE
Confidence 34579999999999 677 9999997 788999998776543 2334456788899999998888999999
Q ss_pred EEEEEcCCCccccc------CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--C
Q 014104 174 ICIWRRNGLRSVFP------SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--Q 245 (430)
Q Consensus 174 i~vwd~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~ 245 (430)
|++||+.+++.... .+.. .+..+++.+++..|++|+.||.|++||+++++++..+.+|...|++++|+++ .
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~-~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCC-CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCc
Confidence 99999988764321 2222 2344566667777999999999999999999999999999999999999965 5
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEec-CCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEE
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLRS-TDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSL 323 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l 323 (430)
++++++.|+.|++||+++++....+.. .+...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+.+|...|+++
T Consensus 196 ~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l 275 (357)
T 4g56_B 196 IFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL 275 (357)
T ss_dssp CEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE
T ss_pred eeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE
Confidence 899999999999999999887766543 255689999999974 688999999999999999999999999999999999
Q ss_pred EEeeCCC-CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEE
Q 014104 324 QHLQNDT-STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCL 402 (430)
Q Consensus 324 ~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v 402 (430)
+ |+|++ ++|++|+.|++|+|||++++++++.+ +|...|+++
T Consensus 276 ~-~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-------------------------------------~H~~~V~~v 317 (357)
T 4g56_B 276 A-YSYHSSPFLASISEDCTVAVLDADFSEVFRDL-------------------------------------SHRDFVTGV 317 (357)
T ss_dssp E-ECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-------------------------------------CCSSCEEEE
T ss_pred E-EcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-------------------------------------CCCCCEEEE
Confidence 9 99987 57999999999999999988776543 366789999
Q ss_pred EE---cCeEEEEeeCCCeEEEEEecCC
Q 014104 403 AV---GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 403 ~~---~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+| ++.+|+|||.||+|++|++...
T Consensus 318 afsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 318 AWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 98 4789999999999999999764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=302.47 Aligned_cols=290 Identities=20% Similarity=0.266 Sum_probs=247.8
Q ss_pred cccCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
..++.....++.+|.+.|++++| +++ +|++|+.||.|++||+.+++....+..+ ..+..++|+|+++.|+ ++.|+.
T Consensus 9 ~~~~~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp CCCCCEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 34556677899999999999999 555 9999999999999999999998888876 5577799999999999 888999
Q ss_pred EEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 174 ICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 174 i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
|++||+++++.+ +..+... ...+.+.+.+..+++|+.||.|++||+++++++..+..|..+|.+++|+|+ .+++++
T Consensus 89 i~vwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 167 (312)
T 4ery_A 89 LKIWDVSSGKCLKTLKGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 167 (312)
T ss_dssp EEEEETTTCCEEEEEECCSSC-EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 999999987743 3333333 344556666777999999999999999999999999999999999999976 799999
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEE--EEeeC
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSL--QHLQN 328 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l--~~~s~ 328 (430)
+.||.|++||+++++.+..+...+...+..++|+|++++|++++.|+.|++||+++++.+..+.+|...+..+ .+..+
T Consensus 168 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (312)
T 4ery_A 168 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT 247 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred eCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence 9999999999999999888876577789999999999999999999999999999999999888887543322 22457
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cC
Q 014104 329 DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GM 406 (430)
Q Consensus 329 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~ 406 (430)
++.+|++|+.||.|++||+.+++.+..+.. |...|.+++| ++
T Consensus 248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~------------------------------------h~~~v~~~~~~p~~ 291 (312)
T 4ery_A 248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQG------------------------------------HTDVVISTACHPTE 291 (312)
T ss_dssp SSCEEEECCTTSCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECSSS
T ss_pred CCcEEEEECCCCEEEEEECCCchhhhhhhc------------------------------------cCCcEEEEeecCcC
Confidence 788999999999999999999999888865 4458888888 47
Q ss_pred eEEEEee--CCCeEEEEEec
Q 014104 407 KKVVTTH--NSKYIRLWKFN 424 (430)
Q Consensus 407 ~~l~t~~--~Dg~v~vw~~~ 424 (430)
+++++++ .|++|++|+.+
T Consensus 292 ~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 292 NIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SEEEEEECTTTCCEEEEECC
T ss_pred CceEEEEccCCccEEEecCC
Confidence 7899887 69999999975
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=302.61 Aligned_cols=295 Identities=15% Similarity=0.176 Sum_probs=238.4
Q ss_pred EeEEEEeccccceeEEEec-C-C-eEEEEeCCCeEEEEecCCCe-----eEEeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 103 IDIDQWKAHSVGVDQCRMK-R-G-LILTGVGDKVMRLWSLEGYK-----CVEEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~-~-~-~l~s~~~dg~i~iwd~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
....+|+||.+.|++++|+ + + +|+||+.|++|+|||+.+.+ +...+.+| ..+..++|+|++++|+ ++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 3456899999999999994 4 4 99999999999999987643 45566665 5678899999999999 88999
Q ss_pred eEEEEEcCCCccccc-CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee-eEEeecCCCCeEEEEecCC---CEE
Q 014104 173 RICIWRRNGLRSVFP-SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSLSED---QLI 247 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~~~~---~~l 247 (430)
.|++|+......... ...........+.+.+..+++++.|+.+++||+..... .....+|...+..++|+++ .++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 188 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPII 188 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEE
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEE
Confidence 999999988764322 22223333444555666699999999999999876543 3445678999999999853 578
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
++++.|+.|++||+++++.+..+.+ |...|++++|+|++++|++|+.|+.|++||+++.+.+..+..+ ..|.++. ++
T Consensus 189 ~s~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~-~~ 265 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKLKTNHIG-HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALC-FS 265 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEE-EC
T ss_pred EEEcCCCEEEEEECCCCceeeEecC-CCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeee-cC
Confidence 9999999999999999999999987 8889999999999999999999999999999999998888765 6788998 98
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
|++. +++++.|+.|++||++++..+..+..+.. .....+|...|++++| +
T Consensus 266 ~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---------------------------~~~~~~h~~~v~~l~~s~d 317 (340)
T 4aow_A 266 PNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVI---------------------------STSSKAEPPQCTSLAWSAD 317 (340)
T ss_dssp SSSS-EEEEEETTEEEEEETTTTEEEEEECCC----------------------------------CCCCCEEEEEECTT
T ss_pred CCCc-eeeccCCCEEEEEECCCCeEEEeccccce---------------------------eeeccCCCCCEEEEEECCC
Confidence 8876 55666799999999998888877754221 1122468889999999 6
Q ss_pred CeEEEEeeCCCeEEEEEecCCCc
Q 014104 406 MKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 406 ~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
+++|+||+.||.|+|||+++|++
T Consensus 318 g~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 318 GQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp SSEEEEEETTSCEEEEEEEC---
T ss_pred CCEEEEEeCCCEEEEEeCCCcCC
Confidence 89999999999999999999874
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=303.73 Aligned_cols=294 Identities=15% Similarity=0.242 Sum_probs=233.8
Q ss_pred CEeEEEEecccc-ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEe--e-ecC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 102 RIDIDQWKAHSV-GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEE--Y-SLP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 102 ~~~~~~l~~h~~-~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~--~-~~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
...+.++.+|.+ .|.+++| |++ +|++|+.|++|+|||+.++..... + .+| ..+..++|+|++++|+ ++.|+.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~ 84 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT 84 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence 356788999998 9999999 566 999999999999999988764422 2 333 5678899999999999 888999
Q ss_pred EEEEEcCCCcc----cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC---eeeEEeecCCCCeEEEEecCC-C
Q 014104 174 ICIWRRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED-Q 245 (430)
Q Consensus 174 i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~~~-~ 245 (430)
+++|++..+.. .+..|... +..+++.+.+..|++|+.|++|++||+.++ +++..+.+|...|.+++|+|+ .
T Consensus 85 v~iw~~~~~~~~~~~~~~~h~~~-v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 163 (345)
T 3fm0_A 85 TCIWKKNQDDFECVTTLEGHENE-VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE 163 (345)
T ss_dssp EEEEEECCC-EEEEEEECCCSSC-EEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred EEEEEccCCCeEEEEEccCCCCC-ceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence 99999987642 23334333 344566667777999999999999999876 356778899999999999986 8
Q ss_pred EEEEEeCCCeEEEEeCCCCc--eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC---------------c
Q 014104 246 LIISGSSLGSIAISGLSSDQ--RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM---------------K 308 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------~ 308 (430)
++++|+.|+.|++||.++++ +...+.+ |...|.+++|+|+|++|++|+.|++|++||.... +
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEG-HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecC-CCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 99999999999999998875 3466766 8889999999999999999999999999997432 2
Q ss_pred eeeeeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce----EEEEEeccCcceeeeccCCceEEEeeccccc
Q 014104 309 SLWETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV----LSRCVMDIGSASSSSNKVSGVIERNEGRRLS 383 (430)
Q Consensus 309 ~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~ 383 (430)
++..+.+ |...|++++ |+|++..|++++.|+.|++|+...+.. ...+..+
T Consensus 243 ~~~~~~~~h~~~v~~v~-~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~------------------------ 297 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIA-WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH------------------------ 297 (345)
T ss_dssp EEEEECSSCSSCEEEEE-ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE------------------------
T ss_pred eeEEecCCCCCcEEEEE-EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee------------------------
Confidence 2334444 778999999 999999999999999999999875431 1111111
Q ss_pred CCcccccCCCCCCCCeeEEEEc--C-eEEEEeeCCCeEEEEEecCCCcC
Q 014104 384 AGCCIDRIPKTIRPPITCLAVG--M-KKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 384 ~~~~~~~~~~~h~~~v~~v~~~--~-~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
...+|...|++++|+ + .+|+|||.||+|++|++.+++++
T Consensus 298 -------~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 298 -------LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp -------ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred -------ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 124688899999995 3 58999999999999999988754
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=327.18 Aligned_cols=317 Identities=14% Similarity=0.110 Sum_probs=253.1
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee-------cC-CceeEEEEecCCCEEE-EEeC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-------LP-NAASLVDFDFDESKIV-GLIG 171 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~l~-~~~~ 171 (430)
..+.++.+|.+.|.+++| +++ +|++|+.|++|++||+.+++.+..+. +| ..+..++|+|++++|+ ++.|
T Consensus 181 ~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D 260 (611)
T 1nr0_A 181 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260 (611)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT
T ss_pred eEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCC
Confidence 457789999999999999 566 99999999999999999999888874 33 5677899999999999 8899
Q ss_pred CeEEEEEcCCCcccc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE
Q 014104 172 TRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII 248 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (430)
+.|++||+.+++... ............+.+.+..+++++.||.+++||..++++...+.+|...|++++|+|+ ++++
T Consensus 261 ~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~ 340 (611)
T 1nr0_A 261 KTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340 (611)
T ss_dssp SEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEE
Confidence 999999999876432 2222222233455556777999999999999999999988899999999999999986 8999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEec--------------------------------------------------------
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRS-------------------------------------------------------- 272 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~-------------------------------------------------------- 272 (430)
+++.|++|++||+.+++....+..
T Consensus 341 s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s 420 (611)
T 1nr0_A 341 SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVS 420 (611)
T ss_dssp EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEEC
T ss_pred EEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEe
Confidence 999999999999987654332100
Q ss_pred -------------------------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce--eeeeecCCCceEEEEE
Q 014104 273 -------------------------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS--LWETRISPNVVYSLQH 325 (430)
Q Consensus 273 -------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~ 325 (430)
.+...+.+++|+|+|++|++|+.|++|++||+.+++. +.. .+|...|.+++
T Consensus 421 ~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~- 498 (611)
T 1nr0_A 421 ADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVA- 498 (611)
T ss_dssp TTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEE-
T ss_pred CCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEE-
Confidence 0123467899999999999999999999999987643 233 67999999999
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCC-CceE------------EEEEeccCcceeeeccCCceEEEeecccccCCcccccCC
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNT-GEVL------------SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIP 392 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~-~~~~------------~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~ 392 (430)
|+|+|++|++++.|++|++||+.+ ++++ ..+...+++..+++++.|+.+++|+..... .......
T Consensus 499 fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~--~~~~~~~ 576 (611)
T 1nr0_A 499 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS--DHPIIIK 576 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT--SCCEEET
T ss_pred ECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc--cccchhh
Confidence 999999999999999999999986 4433 233344445567777788888887764321 1121345
Q ss_pred CCC-CCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 393 KTI-RPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 393 ~~h-~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.+| ...|++++| +++ |++|+.|++|++|++.
T Consensus 577 ~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 577 GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 678 899999999 466 9999999999999984
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=306.45 Aligned_cols=281 Identities=19% Similarity=0.232 Sum_probs=233.3
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCC-------------------ceeEEEEecCCCE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN-------------------AASLVDFDFDESK 165 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 165 (430)
...+|.+.|.+++| ++| +|++|+ ++++++|++.+++.+..+..+. .+..++|+|++++
T Consensus 59 ~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~ 137 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 137 (393)
T ss_dssp EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred EecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence 33479999999999 566 888876 7899999999998887776432 2667999999999
Q ss_pred EE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec
Q 014104 166 IV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 166 l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~ 242 (430)
|+ ++.|+.|++||+++++.. +..+... +..+++.+.+..+++++.|++|++||++++++...+. +...+.+++++
T Consensus 138 l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~ 215 (393)
T 1erj_A 138 LATGAEDRLIRIWDIENRKIVMILQGHEQD-IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVS 215 (393)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEccCCCC-EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEE
Confidence 99 888999999999988743 3344433 3445566667779999999999999999999887776 56789999999
Q ss_pred C-C-CEEEEEeCCCeEEEEeCCCCceeEEEe------cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-------
Q 014104 243 E-D-QLIISGSSLGSIAISGLSSDQRVATLR------STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM------- 307 (430)
Q Consensus 243 ~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------- 307 (430)
| + .++++|+.|+.|++||+++++.+..+. ..|...|.+++|+|+|++|++|+.|+.|++||+++.
T Consensus 216 ~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 295 (393)
T 1erj_A 216 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 295 (393)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCccccc
Confidence 7 4 799999999999999999998887773 237789999999999999999999999999999753
Q ss_pred -----ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 308 -----KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 308 -----~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
.+...+.+|...|.+++ ++|++.+|++|+.|+.|++||+.+++++..+.+|.
T Consensus 296 ~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~---------------------- 352 (393)
T 1erj_A 296 TPNSGTCEVTYIGHKDFVLSVA-TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR---------------------- 352 (393)
T ss_dssp -----CEEEEEECCSSCEEEEE-ECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS----------------------
T ss_pred CCCCCcceEEEecccCcEEEEE-ECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC----------------------
Confidence 34556788999999999 99999999999999999999999999988887654
Q ss_pred cCCcccccCCCCCCCCeeEEEE--------cCeEEEEeeCCCeEEEEEecCCC
Q 014104 383 SAGCCIDRIPKTIRPPITCLAV--------GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~--------~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..|.++++ ++++|+||+.||+|+||++...+
T Consensus 353 --------------~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 353 --------------NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp --------------SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred --------------CCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 47777776 25789999999999999987543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=298.48 Aligned_cols=287 Identities=15% Similarity=0.174 Sum_probs=225.0
Q ss_pred CEeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCC--eeEEee-ec-C-CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 102 RIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGY--KCVEEY-SL-P-NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~-~~-~-~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
...+++|.+|.++|.+++|++++|++|+.|++|++||+.++ +....+ .. | ..+..++|+|+++.|+ ++.|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccceeeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 45678999999999999997679999999999999999875 445555 22 3 5678899999999998 88899999
Q ss_pred EEEcCCCc---------ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC----CeeeEEeecCCCCeEEEEec
Q 014104 176 IWRRNGLR---------SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS----RKCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 176 vwd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~~ 242 (430)
+||++... ..+..|... +..+++.+++..|++|+.|++|++||+.. .+++..+.+|...|.+++|+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENE-VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp EEEC-------CCCEEEEEEC----C-EEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred EEEcccCcCccccceeEEEEcCCCCc-EEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 99986421 122333333 34455666677799999999999999943 25677888999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCCC--ceeEEEecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCC--------ce
Q 014104 243 ED-QLIISGSSLGSIAISGLSSD--QRVATLRSTDCTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTM--------KS 309 (430)
Q Consensus 243 ~~-~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~--------~~ 309 (430)
|+ .+|++|+.|++|++||..++ +++..+.+ |...|.+++|+|+ +..|++|+.|++|++||++.+ ..
T Consensus 163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp SSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC-CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 86 89999999999999998876 56778877 8889999999998 678999999999999999764 33
Q ss_pred eeeeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccc
Q 014104 310 LWETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI 388 (430)
Q Consensus 310 ~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~ 388 (430)
...+.. |...|++++ |++++ +|++++.||.|++||..+++.......
T Consensus 242 ~~~~~~~h~~~v~~v~-~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~------------------------------ 289 (330)
T 2hes_X 242 EAILPDVHKRQVYNVA-WGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR------------------------------ 289 (330)
T ss_dssp EEECCSCCSSCEEEEE-ECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE------------------------------
T ss_pred eeecccccccceEEEE-EcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc------------------------------
Confidence 444544 889999999 88654 899999999999999876642111110
Q ss_pred ccCCCCCCC-CeeEEEEc----CeEEEEeeCCCeEEEEEecC
Q 014104 389 DRIPKTIRP-PITCLAVG----MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 389 ~~~~~~h~~-~v~~v~~~----~~~l~t~~~Dg~v~vw~~~~ 425 (430)
..+|.. .|++++|. +++|+||+.||+|+||+++.
T Consensus 290 ---~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 290 ---ALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ---SCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ---ccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 124555 89999983 57899999999999999865
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=318.87 Aligned_cols=310 Identities=15% Similarity=0.236 Sum_probs=260.4
Q ss_pred cCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
.....+..+.+|...|.+++| +++ .+++++.|+.|++||.. ++.+..+.++ ..+..++|+|+++.++ ++.|+.|+
T Consensus 250 ~~~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~ 328 (577)
T 2ymu_A 250 RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328 (577)
T ss_dssp TTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEE
Confidence 344567889999999999999 566 99999999999999965 5677777765 5567799999999999 88899999
Q ss_pred EEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 176 IWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 176 vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
+||..+.... +..+.. ....+++.+++..+++++.||.|++||. +++.+..+.+|...|.+++|+|+ +++++++.|
T Consensus 329 ~w~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d 406 (577)
T 2ymu_A 329 LWNRNGQHLQTLTGHSS-SVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 406 (577)
T ss_dssp EEETTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETT
T ss_pred EEeCCCCeeEEEeCCCC-CEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCC
Confidence 9998876533 333332 3344566667777999999999999995 67888899999999999999976 899999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
+.|++||. +++.+..+.+ |...|++++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++ |+|++++|
T Consensus 407 ~~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~-~spd~~~l 482 (577)
T 2ymu_A 407 KTVKLWNR-NGQLLQTLTG-HSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA-FSPDGQTI 482 (577)
T ss_dssp SEEEEECT-TCCEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE-ECTTSCEE
T ss_pred CEEEEEeC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEE-EcCCCCEE
Confidence 99999995 5778888887 8889999999999999999999999999996 4778888999999999999 99999999
Q ss_pred EEEcCCCeEEEEEcCCCceEEEEEeccCcc----------eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLSRCVMDIGSA----------SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
++++.|+.|++||. ++++++.+..|...+ ++++++.|+.+++|+. .+..+.. ..+|...|++++
T Consensus 483 as~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~----~~~~~~~-~~~h~~~v~~~~ 556 (577)
T 2ymu_A 483 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 556 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT----TSCEEEE-EECCSSCEEEEE
T ss_pred EEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC----CCCEEEE-EcCCCCCEEEEE
Confidence 99999999999995 588888888887765 4555666667777662 2333333 357999999999
Q ss_pred E--cCeEEEEeeCCCeEEEEE
Q 014104 404 V--GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 404 ~--~~~~l~t~~~Dg~v~vw~ 422 (430)
| |+++|+|++.|++|++||
T Consensus 557 fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 557 FSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp ECTTSSCEEEEETTSCEEEEC
T ss_pred EcCCCCEEEEEeCCCEEEEeC
Confidence 9 689999999999999997
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=294.52 Aligned_cols=296 Identities=14% Similarity=0.177 Sum_probs=230.7
Q ss_pred CEeEEEEeccccceeEEEe-----c--CC-eEEEEeCCCeEEEEecCCC-------eeEEeeecC-CceeEEEEecCCCE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-----K--RG-LILTGVGDKVMRLWSLEGY-------KCVEEYSLP-NAASLVDFDFDESK 165 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-----~--~~-~l~s~~~dg~i~iwd~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~ 165 (430)
......|.||.+.|++++| . ++ +|+||+.|++|++||+.+. .....+.+| ..+..++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3467789999999999998 3 45 9999999999999998753 455666666 55778999999999
Q ss_pred EE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee---cCCCCeEEE
Q 014104 166 IV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR---MHCAPVTSL 239 (430)
Q Consensus 166 l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~i~~~ 239 (430)
++ ++.|+.|++||+.+++.. +..|... +..+++.+++..+++++.|++|++||+.. ....... .|...|.++
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~-v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~ 168 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSE-VYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCV 168 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSC-EEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCc-EEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeee
Confidence 98 888999999999988743 3444443 34466666777899999999999999974 3333333 688899999
Q ss_pred EecCC-----------CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC-
Q 014104 240 SLSED-----------QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM- 307 (430)
Q Consensus 240 ~~~~~-----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~- 307 (430)
+|+|+ .++++++.|+.|++|| .+.+....+.+ |...|.+++|+|+|++|++|+.||.|++||+...
T Consensus 169 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKA-HESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp EECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred eeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcC-ccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 99975 4899999999999999 45667777776 8889999999999999999999999999999543
Q ss_pred ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 308 KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 308 ~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
.....+ .+...|.+++ |+|++.+++++ .|+.|++||+.+++............ .
T Consensus 247 ~~~~~~-~~~~~v~~v~-~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~-----------------------~ 300 (343)
T 2xzm_R 247 YPQREF-DAGSTINQIA-FNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPI-----------------------T 300 (343)
T ss_dssp SCSEEE-ECSSCEEEEE-ECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSG-----------------------G
T ss_pred ccceee-cCCCcEEEEE-ECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcc-----------------------h
Confidence 334333 3456799999 99999877655 57889999998776543221111100 0
Q ss_pred cccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 388 IDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
......+|...|++++| ++++|++|+.||.|++|++++++
T Consensus 301 ~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 301 KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred hhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 00112467889999999 58999999999999999998764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-39 Score=287.58 Aligned_cols=285 Identities=15% Similarity=0.141 Sum_probs=245.5
Q ss_pred cCCEeEEEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 100 EGRIDIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
.+...++++.+|.+.|++++|+++ +|++|+.||.|++||+.+++....+..+ ..+..++|+|+++.++ ++.++.+++
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccHHHHHHhhCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 456788899999999999999766 9999999999999999999888887765 6677899999999999 889999999
Q ss_pred EEcCCCc--ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-C-CEEEEEeC
Q 014104 177 WRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-D-QLIISGSS 252 (430)
Q Consensus 177 wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~ 252 (430)
|++.... .......++...+.++.+.+..+++++.||.|++|| .++.+..+..|...+.++.+.| + +.+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 163 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA 163 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred EEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence 9987653 122222333344566777788899999999999999 7788889999999999999986 4 89999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
|+.|++|| .++....+...+...+.+++|+|++. +++++.||.|++||+++++.+..+..|...|.+++ |+|++ .
T Consensus 164 d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~-~~~~~-~ 238 (313)
T 3odt_A 164 DKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIK-LLPNG-D 238 (313)
T ss_dssp TSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-ECTTS-C
T ss_pred CCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEE-EecCC-C
Confidence 99999999 45677777766888999999999998 89999999999999999999999999999999999 99999 6
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV 410 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~ 410 (430)
|++++.||.|++||+.+++++..+..|. ..|++++| +++ ++
T Consensus 239 l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------------------~~i~~~~~~~~~~-~~ 281 (313)
T 3odt_A 239 IVSCGEDRTVRIWSKENGSLKQVITLPA------------------------------------ISIWSVDCMSNGD-II 281 (313)
T ss_dssp EEEEETTSEEEEECTTTCCEEEEEECSS------------------------------------SCEEEEEECTTSC-EE
T ss_pred EEEEecCCEEEEEECCCCceeEEEeccC------------------------------------ceEEEEEEccCCC-EE
Confidence 8999999999999999999998887644 47888888 355 77
Q ss_pred EeeCCCeEEEEEecCCCc
Q 014104 411 TTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 411 t~~~Dg~v~vw~~~~~~~ 428 (430)
+++.||.|++|++.+++.
T Consensus 282 ~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 282 VGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EEETTSCEEEEESCGGGC
T ss_pred EEeCCCcEEEEeCCCCce
Confidence 899999999999987653
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=302.47 Aligned_cols=302 Identities=16% Similarity=0.155 Sum_probs=248.5
Q ss_pred eEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCe------eEEeeecC-CceeEEEEecC----C---CEEE-E
Q 014104 104 DIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK------CVEEYSLP-NAASLVDFDFD----E---SKIV-G 168 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~~-~~~~~~~~~~~----~---~~l~-~ 168 (430)
....+.+|.+.|++++|++++|++|+.||+|++||+.+++ .+..+..+ ..+..++|+++ + +.|+ +
T Consensus 8 ~~~~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EEEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 4567889999999999977999999999999999999887 67777765 56778999999 8 8888 8
Q ss_pred EeCCeEEEEEcCCCcc-----c--ccCCC----CceeeeeEEE----EcCCc-eEEEecCCeEEEEECCC------Ceee
Q 014104 169 LIGTRICIWRRNGLRS-----V--FPSRE----GTFMKGLCMR----YFDPE-AVVGCEDGTARVFDMYS------RKCS 226 (430)
Q Consensus 169 ~~~~~i~vwd~~~~~~-----~--~~~~~----~~~~~~~~~~----~~~~~-l~~~~~dg~i~vwd~~~------~~~~ 226 (430)
+.|+.|++||+.+++. . +..+. ...+..+++. +.+.. +++++.||.|++||+.+ ++.+
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 167 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 167 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccccccee
Confidence 8899999999987763 2 23332 2445567777 77888 99999999999999988 7666
Q ss_pred E-----Eee-------cCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecC--C---CCCeEEEEEecCCCE
Q 014104 227 Q-----IIR-------MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST--D---CTGIKTLCYNPCSRL 289 (430)
Q Consensus 227 ~-----~~~-------~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~---~~~v~~~~~~~~~~~ 289 (430)
. .+. .|...|.+++|+|+..+++++.|+.|++||+++++.+..+... | ...|.+++|+|++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~ 247 (397)
T 1sq9_A 168 NWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 247 (397)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred eccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCE
Confidence 6 774 4889999999997559999999999999999999998888741 4 779999999999999
Q ss_pred EEEEeCC---CeEEEEeCCCCceeeeeec-------------CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 290 VFAGTTA---GYASCWDLRTMKSLWETRI-------------SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 290 l~~~~~d---g~i~i~d~~~~~~~~~~~~-------------~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
|++++.| +.|++||+++++.+..+.. |...|.+++ |+|++++|++++.||.|++||+.+++++
T Consensus 248 l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 248 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 9999999 9999999999999999998 999999999 9999999999999999999999999999
Q ss_pred EEEE------eccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cC----------eEEEEeeCC
Q 014104 354 SRCV------MDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GM----------KKVVTTHNS 415 (430)
Q Consensus 354 ~~~~------~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~----------~~l~t~~~D 415 (430)
..+. .|... ... ........|...|++++| ++ ++|++|+.|
T Consensus 327 ~~~~~~~~~~~~~~~-------------------~~~--g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 327 TTLNMHCDDIEIEED-------------------ILA--VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp EEEECCGGGCSSGGG-------------------CCC--BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred EEEecccCcccchhh-------------------hhc--cccccccccCCceeEEEeccccccccccccccceEEEecCC
Confidence 9887 33110 000 001112345789999999 45 699999999
Q ss_pred CeEEEEEecCCC
Q 014104 416 KYIRLWKFNYSD 427 (430)
Q Consensus 416 g~v~vw~~~~~~ 427 (430)
|.|++|++++|+
T Consensus 386 g~i~iw~~~~g~ 397 (397)
T 1sq9_A 386 RSIRWFREAGGK 397 (397)
T ss_dssp TEEEEEEEEC--
T ss_pred CcEEEEEcCCCC
Confidence 999999999874
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=289.67 Aligned_cols=286 Identities=15% Similarity=0.175 Sum_probs=247.3
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
......+.+|.+.|++++| +++ +|++|+.||.|++||+.+++.+..+..+ ..+..++|+++++.|+ ++.|+.|++|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 4467789999999999999 455 9999999999999999999999999866 5677899999999999 8889999999
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCe-----------eeEEeecCCC--CeEEE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRK-----------CSQIIRMHCA--PVTSL 239 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~-----------~~~~~~~~~~--~i~~~ 239 (430)
|+.+++.............+++.+.+..+++++.+ |.|++||+.++. .+..+..|.+ .+.++
T Consensus 102 d~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 102 DVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp ETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred ECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 99988755443344445567777777779999998 999999987653 3445556666 99999
Q ss_pred EecCC-CEEEEEeCCCeEEEEeCCC-CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC
Q 014104 240 SLSED-QLIISGSSLGSIAISGLSS-DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 240 ~~~~~-~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
+|+|+ +.+++++.||.|++||+++ ++.+..+.. |...|.+++|+|++++|++++.|+.|++||+++++.+..+. +.
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~ 259 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TD 259 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CS
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CC
Confidence 99976 8999999999999999998 677888876 78899999999999999999999999999999999888877 66
Q ss_pred CceEEEEEeeCCCCeEEEEcCCC--------------eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccccc
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDG--------------VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLS 383 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~ 383 (430)
..+..+. ++|+++++++++.++ .+++||+.+++.+..+..|
T Consensus 260 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~------------------------ 314 (369)
T 3zwl_B 260 CPLNTAV-ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH------------------------ 314 (369)
T ss_dssp SCEEEEE-ECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC------------------------
T ss_pred CCceeEE-ecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc------------------------
Confidence 8899998 999999999999888 8999999999988888654
Q ss_pred CCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 384 AGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 384 ~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...|++++| ++++|++|+.||.|++|+++.+
T Consensus 315 ------------~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 315 ------------FGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp ------------SSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred ------------cCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 448899998 5889999999999999999764
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-38 Score=306.95 Aligned_cols=312 Identities=16% Similarity=0.253 Sum_probs=256.7
Q ss_pred cCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEE
Q 014104 100 EGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
.....+..+.+|.+.|.+++| +++ +|++++.|+.|++||.. ++.+..+..+ ..+..++|+|+++.++ ++.++.++
T Consensus 209 ~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~ 287 (577)
T 2ymu_A 209 RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVK 287 (577)
T ss_dssp TTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEE
Confidence 344567889999999999999 556 99999999999999965 5677777765 5567799999999998 88899999
Q ss_pred EEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 176 IWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 176 vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
+||.+.... .+..+... ...+++.+++..+++++.||.|++||.. ++.+..+.+|...|.+++|+|+ ..+++++.|
T Consensus 288 ~w~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d 365 (577)
T 2ymu_A 288 LWNRNGQLLQTLTGHSSS-VWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDD 365 (577)
T ss_dssp EEETTSCEEEEECCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEeCCCcEEEEEecCCCC-eEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCC
Confidence 999866542 23333333 3345566667779999999999999975 5566788899999999999986 899999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
+.|++||. +++.+..+.. |...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++ |+|++++|
T Consensus 366 g~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~-~s~d~~~l 441 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA-FSPDDQTI 441 (577)
T ss_dssp SEEEEEET-TCCEEEEEEC-CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEE-ECTTSSEE
T ss_pred CEEEEEcC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEE-ECCCCCEE
Confidence 99999995 5788888887 8889999999999999999999999999995 5788889999999999999 99999999
Q ss_pred EEEcCCCeEEEEEcCCCceEEEEEeccCccee----------eeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 334 VVGGIDGVLRVLDQNTGEVLSRCVMDIGSASS----------SSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~----------~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
++++.|+.|++||. +++.+..+..|...+.. ++++.|+.+++|+. .+..+.. ..+|...|++++
T Consensus 442 ~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~----~~~~~~~-~~~h~~~v~~l~ 515 (577)
T 2ymu_A 442 ASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVRGVA 515 (577)
T ss_dssp EEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET----TSCEEEE-EECCSSCEEEEE
T ss_pred EEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC----CCCEEEE-EeCCCCCEEEEE
Confidence 99999999999996 47788888877766644 44555556666552 2233333 357899999999
Q ss_pred E--cCeEEEEeeCCCeEEEEEec
Q 014104 404 V--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 404 ~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
| |+++|++++.||.|++||..
T Consensus 516 ~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 516 FSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp ECTTSSCEEEEETTSEEEEECTT
T ss_pred EcCCCCEEEEEECcCEEEEEeCC
Confidence 9 68999999999999999964
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=286.86 Aligned_cols=243 Identities=19% Similarity=0.277 Sum_probs=218.0
Q ss_pred eEEEEeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
....+.||...|.+++++ ++ ++++|+.|++|++||+.+++.+..+..+ ..+..++|+|++++|+ ++.++.+++|++
T Consensus 72 ~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 72 LQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 345789999999999994 44 9999999999999999999999888865 4566799999999999 888999999999
Q ss_pred CCCcccccC-CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 180 NGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 180 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
++++..... ........+++.+++..+++|+.||.|++||+++++.+..+.+|..+|.+++|+|+ .+|++|+.|+.|+
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 987754322 22233455677777788999999999999999999999999999999999999986 8999999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+||+++++....+.+ |...|.+++|+|++++|++++.|++|++||+++++++..+.+|.+.|.+++ |+|++++|++++
T Consensus 232 iwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~-~s~~g~~l~s~~ 309 (321)
T 3ow8_A 232 IYDVQHANLAGTLSG-HASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK-YNGNGSKIVSVG 309 (321)
T ss_dssp EEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEE
T ss_pred EEECCCcceeEEEcC-CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE-ECCCCCEEEEEe
Confidence 999999999999987 888999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCeEEEEEcC
Q 014104 338 IDGVLRVLDQN 348 (430)
Q Consensus 338 ~dg~i~vwd~~ 348 (430)
.||.|++||..
T Consensus 310 ~d~~i~vwd~p 320 (321)
T 3ow8_A 310 DDQEIHIYDCP 320 (321)
T ss_dssp TTCCEEEEECC
T ss_pred CCCeEEEEeCC
Confidence 99999999964
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-38 Score=296.44 Aligned_cols=313 Identities=12% Similarity=0.138 Sum_probs=252.0
Q ss_pred EEeccccceeEEEec-CC--eEEEEeCCCeEEEEec----CCCe------eEEeeec----------C-CceeEEEEecC
Q 014104 107 QWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSL----EGYK------CVEEYSL----------P-NAASLVDFDFD 162 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~-~~--~l~s~~~dg~i~iwd~----~~~~------~~~~~~~----------~-~~~~~~~~~~~ 162 (430)
....|.+.|.+++|+ ++ +|++|+.||.|++||+ .+++ ....+.. + ..+..++|+|+
T Consensus 40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 344567999999994 33 8999999999999999 8887 4555544 2 36788999999
Q ss_pred CCEEE-EEeCCeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCC-----
Q 014104 163 ESKIV-GLIGTRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP----- 235 (430)
Q Consensus 163 ~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----- 235 (430)
+++|+ ++.++.|++||...... .+..+. .....+++.+.+..+++++.||.|++||+.+++.+..+..+...
T Consensus 120 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 120 GNSIVTGVENGELRLWNKTGALLNVLNFHR-APIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp SSEEEEEETTSCEEEEETTSCEEEEECCCC-SCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeeccCCC-ccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 99999 88899999999544332 223233 23445566666777999999999999999999999988877776
Q ss_pred ----------eEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 236 ----------VTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 236 ----------i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+.++.|+++..+++++.||.|++||+++++.+..+.. |...|.+++|+|++++|++++.|+.|++||++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~ 277 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277 (425)
T ss_dssp -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence 8999999888899999999999999999999888876 88899999999999999999999999999999
Q ss_pred CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc----------eeeeccCCceEE
Q 014104 306 TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA----------SSSSNKVSGVIE 375 (430)
Q Consensus 306 ~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~~s~d~~v~ 375 (430)
+++.+..+..|...|.++. |+|++ ++++++.||.|++||+.+++.+..+..|...+ .+++++.||.+.
T Consensus 278 ~~~~~~~~~~~~~~i~~~~-~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 355 (425)
T 1r5m_A 278 NGNSQNCFYGHSQSIVSAS-WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVN 355 (425)
T ss_dssp SBSCSEEECCCSSCEEEEE-EETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCccceEecCCCccEEEEE-ECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEE
Confidence 9999999999999999999 99999 99999999999999999999888888766544 556666777777
Q ss_pred EeecccccCC-----------------cccccCCCCCCC--CeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 376 RNEGRRLSAG-----------------CCIDRIPKTIRP--PITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 376 ~~~~~~~~~~-----------------~~~~~~~~~h~~--~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+|+....... ..+..+ ..|.. .|++++| ++++|++++.||.|++|+++
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7766543300 023333 45654 9999999 58899999999999999986
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=305.64 Aligned_cols=321 Identities=13% Similarity=0.135 Sum_probs=240.9
Q ss_pred cccCCEeEEEE-eccccceeEEEe-c-CC-eEEEEeCCCeEEEEecCC---Ce---eEEeeecCCceeEEEEecCCCEEE
Q 014104 98 LEEGRIDIDQW-KAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEG---YK---CVEEYSLPNAASLVDFDFDESKIV 167 (430)
Q Consensus 98 ~~~~~~~~~~l-~~h~~~v~~~~~-~-~~-~l~s~~~dg~i~iwd~~~---~~---~~~~~~~~~~~~~~~~~~~~~~l~ 167 (430)
|......+.++ .+|.+.|++++| + ++ +|++|+.||+|++||+.+ +. ....+.+...+..++|+++++.|+
T Consensus 48 w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 127 (437)
T 3gre_A 48 GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFA 127 (437)
T ss_dssp GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEE
T ss_pred ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEE
Confidence 55666788888 899999999999 4 45 999999999999999876 33 344555567788899999999998
Q ss_pred -EEeCCeEEEEEcC---CCcccc--c--------C-CCCceeeeeEEE----EcCCceEEEecCCeEEEEECCCCeeeEE
Q 014104 168 -GLIGTRICIWRRN---GLRSVF--P--------S-REGTFMKGLCMR----YFDPEAVVGCEDGTARVFDMYSRKCSQI 228 (430)
Q Consensus 168 -~~~~~~i~vwd~~---~~~~~~--~--------~-~~~~~~~~~~~~----~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 228 (430)
++.|+.|++||++ .++... . . ..++...+.++. +.+..+++++.||.|++||+++++++..
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 8889999999995 332111 0 0 000111223333 2355699999999999999999999999
Q ss_pred eec--CCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe----cCCCEEEEEeCCCeEEE
Q 014104 229 IRM--HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN----PCSRLVFAGTTAGYASC 301 (430)
Q Consensus 229 ~~~--~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~i 301 (430)
+.. |.+.|++++|+|+ .++++|+.||.|++||+++++.+..+...+...|.+++|+ |++.+|++|+.||.|++
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~i 287 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEE
Confidence 988 8899999999976 8999999999999999999999998874477799999655 56789999999999999
Q ss_pred EeCCCCceeeeeec--------------------------CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEE
Q 014104 302 WDLRTMKSLWETRI--------------------------SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 302 ~d~~~~~~~~~~~~--------------------------~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 355 (430)
||+++++.+..+.+ |...|.+++ ++ ++++|++|+.||.|++||+.+++....
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~-~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTIS-VS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEE-EE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEE-EC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 99999887776654 445678888 77 678999999999999999999999999
Q ss_pred EEeccCcc---eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c--CeEEEEeeCCCeEEEEE
Q 014104 356 CVMDIGSA---SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G--MKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 356 ~~~~~~~~---~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~--~~~l~t~~~Dg~v~vw~ 422 (430)
+..|.... .....+.+..+.... ......... .....|...|+++++ + +.+|+||+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRK-MKRTSTHSV-DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEE-CC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEe-ccccccccc-CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 88764322 222233333332211 111111111 333569999999999 3 66999999999999995
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=291.42 Aligned_cols=285 Identities=11% Similarity=0.081 Sum_probs=234.8
Q ss_pred cCCEeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeee---cCCceeEEEEec-CCCEEE-EEeC
Q 014104 100 EGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDF-DESKIV-GLIG 171 (430)
Q Consensus 100 ~~~~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~-~~~~l~-~~~~ 171 (430)
........+.+|.+.|.+++| +++ +|++|+.||.|++||+.+++....+. +...+..++|+| +++.++ ++.|
T Consensus 61 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 61 KSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred cccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 345677889999999999999 444 99999999999999999888777765 346678899999 677777 8889
Q ss_pred CeEEEEEcCCCcc-cccCCCC--ceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-E
Q 014104 172 TRICIWRRNGLRS-VFPSREG--TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-L 246 (430)
Q Consensus 172 ~~i~vwd~~~~~~-~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~ 246 (430)
+.|++||+.+... .+..+.. .....+++.+.+..+++++.||.|++||+ +++.+..+.+|...|.+++|+|+ . +
T Consensus 141 ~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~ 219 (383)
T 3ei3_B 141 GATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWL 219 (383)
T ss_dssp TEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTE
T ss_pred CEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCE
Confidence 9999999997543 2333332 23456677777788999999999999999 67888999999999999999986 5 8
Q ss_pred EEEEeCCCeEEEEeCCC----CceeEEEecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeeeeecCC----
Q 014104 247 IISGSSLGSIAISGLSS----DQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTMKSLWETRISP---- 317 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 317 (430)
+++++.|+.|++||+++ +..+..+. |...|.+++|+| ++++|++++.|+.|++||+++++.+..+..|.
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 297 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSYIAEMP--HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQF 297 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCEEEEEE--CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCC
T ss_pred EEEEeCCCEEEEEeCCCCCcccceEEEec--CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccc
Confidence 99999999999999998 66677674 888999999999 99999999999999999999988877776553
Q ss_pred -------------CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccC
Q 014104 318 -------------NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSA 384 (430)
Q Consensus 318 -------------~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~ 384 (430)
..+..++ ++|++++ +++.||.|++||+.+++++..+..+.
T Consensus 298 ~~~~~~~~~~~p~~~~~~~~-~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~------------------------ 350 (383)
T 3ei3_B 298 QHLTPIKATWHPMYDLIVAG-RYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPN------------------------ 350 (383)
T ss_dssp TTSCCCCCEECSSSSEEEEE-CBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTT------------------------
T ss_pred ccccceEEeccCCCCceEEE-ecCCccc--ccCCCCeEEEEecCCCceeeeecCCC------------------------
Confidence 2334455 7777776 78899999999999999998887532
Q ss_pred CcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 385 GCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 385 ~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
|...+.+++| ++++|++|+ ||.|+|||+++
T Consensus 351 ----------~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 351 ----------AAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ----------BCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ----------CCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 2346777777 588899997 99999999875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=295.21 Aligned_cols=314 Identities=13% Similarity=0.099 Sum_probs=241.3
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
.+..|.++|.+++| +++ +|++|+.|+.|++||+.+++ .+..+..+ ..+..++|+|+++.++ ++.|+.|++||++
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 35669999999999 455 99999999999999999987 78888765 5677899999999999 8889999999998
Q ss_pred CCccc----ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee---e-EEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 181 GLRSV----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---S-QIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 181 ~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~-~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
+++.. ...+ ......+++.+.+..+++++.||.|++||+.+++. . .....|...|.+++|+|+ +++++++
T Consensus 83 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 161 (372)
T 1k8k_C 83 GRTWKPTLVILRI-NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 161 (372)
T ss_dssp TTEEEEEEECCCC-SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeeeeEEeecC-CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc
Confidence 87622 1222 23344556666677799999999999999988762 2 333568899999999976 7999999
Q ss_pred CCCeEEEEeC------------------CCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 252 SLGSIAISGL------------------SSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 252 ~dg~i~vwd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
.||.|++||+ .+++.+..+.. |...|.+++|+|++++|++++.|+.|++||+++++++..+
T Consensus 162 ~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 162 CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred CCCCEEEEEcccccccccccccccccccchhhheEecCC-CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence 9999999995 36778888876 8889999999999999999999999999999999999999
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC--Cc--eEEEEEeccCcceeeeccCCceEEEeecccccCCccc-
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT--GE--VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCI- 388 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~--~~--~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~- 388 (430)
..|...|.+++ |+|++.+|++| .|+.|++||+.+ ++ .+..+..+... .......+..+..... .+...
T Consensus 241 ~~~~~~v~~~~-~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~ 313 (372)
T 1k8k_C 241 ASETLPLLAVT-FITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQS----SQRGLTARERFQNLDK-KASSEG 313 (372)
T ss_dssp ECSSCCEEEEE-EEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC------------CHHHHHHHCCC-CC----
T ss_pred ccCCCCeEEEE-EecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccc----hhhhcchhhhhhhccc-cccccc
Confidence 99999999999 99999988888 899999999987 53 22222111110 0000000101100000 00111
Q ss_pred -----ccCCCCCCCCeeEEEE---cC---eEEEEeeCCCeEEEEEecCCCcC
Q 014104 389 -----DRIPKTIRPPITCLAV---GM---KKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 389 -----~~~~~~h~~~v~~v~~---~~---~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
..+..+|...|+++++ +| .+|+||+.||.|++|++.+++++
T Consensus 314 ~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 314 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp -----CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHH
T ss_pred CccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHh
Confidence 3344589999999986 35 89999999999999999876544
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=278.98 Aligned_cols=278 Identities=14% Similarity=0.173 Sum_probs=233.4
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeE---Eeee---cCCceeEEEEecCCCEEE-EEeCCeE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV---EEYS---LPNAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~---~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
......+|.+.|.+++| +++ ++++++ ||.|++||+.+++.. ..+. ....+..++|+|+++.++ ++.++.|
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred ccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 34445589999999999 455 888888 999999999876533 3332 346678899999999988 8889999
Q ss_pred EEEEcCCCcc--c--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEE
Q 014104 175 CIWRRNGLRS--V--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 175 ~vwd~~~~~~--~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~ 249 (430)
++||+++++. . +..+.. ....+++.+.+..+++++.||.|++||+++++.+..+..|...|.+++|+|+ +.+++
T Consensus 122 ~~~d~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCCcceeeecccCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEE
Confidence 9999998762 1 222222 2344556666677999999999999999999999999999999999999976 79999
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++.|++||+++++.. .+..|...|.+++ |+|+
T Consensus 201 ~~~dg~i~~~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~-~~~~ 276 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLK-FAYC 276 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEE-ECTT
T ss_pred EecCCcEEEEECCCCceEeeec--CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEE-ECCC
Confidence 9999999999999999988886 6778999999999999999999999999999987654 6778999999999 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK 407 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~ 407 (430)
+++|++++.||.|++||+.+++.+.... |...|++++| +++
T Consensus 277 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~s~~~~ 319 (337)
T 1gxr_A 277 GKWFVSTGKDNLLNAWRTPYGASIFQSK-------------------------------------ESSSVLSCDISVDDK 319 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEE-------------------------------------CSSCEEEEEECTTSC
T ss_pred CCEEEEecCCCcEEEEECCCCeEEEEec-------------------------------------CCCcEEEEEECCCCC
Confidence 9999999999999999999988774432 3457889888 588
Q ss_pred EEEEeeCCCeEEEEEec
Q 014104 408 KVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~~~ 424 (430)
+|++++.||.|++|++.
T Consensus 320 ~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 320 YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEEETTSCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEe
Confidence 99999999999999974
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-38 Score=295.14 Aligned_cols=310 Identities=12% Similarity=0.117 Sum_probs=250.2
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccc--cC
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF--PS 188 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~--~~ 188 (430)
.+++++| +++ +|++|+.||.|++||+.+++....+..+.......++++++.|+ ++.|+.|++||+++++... ..
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 3447888 455 99999999999999999888777777665556678899999998 8889999999999877543 23
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~ 267 (430)
+... +..+++.+.+..+++++.||.|++||+.+++.+..+.+|.+.|.+++|+|+ .++++++.|+.|++||+++++.+
T Consensus 138 h~~~-v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 138 HVSE-ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ccCc-cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 3333 345566666777999999999999999999999999999999999999976 89999999999999999999999
Q ss_pred EEEecC--CCCCe---------------------EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCCCceEEE
Q 014104 268 ATLRST--DCTGI---------------------KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISPNVVYSL 323 (430)
Q Consensus 268 ~~~~~~--~~~~v---------------------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l 323 (430)
..+..+ +...+ .+++|+|++++|++|+.||.|++||+++++.+..+. .|...|.++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 888752 23344 445557899999999999999999999988777664 477899999
Q ss_pred EEeeCCCC-eEEEEcCCCeEEEEEcCCCce-EEEEEeccC----------cceeeeccCCceEEEeecccccCCccc---
Q 014104 324 QHLQNDTS-TLVVGGIDGVLRVLDQNTGEV-LSRCVMDIG----------SASSSSNKVSGVIERNEGRRLSAGCCI--- 388 (430)
Q Consensus 324 ~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~----------~~~~~~~s~d~~v~~~~~~~~~~~~~~--- 388 (430)
+ |+|+++ +|++|+.||.|++||+++++. +..+..+.. ...+++++.|+.+.+|+.........+
T Consensus 297 ~-~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~ 375 (420)
T 3vl1_A 297 T-VDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEF 375 (420)
T ss_dssp E-ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTCCSCEECT
T ss_pred E-EeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCCCccceec
Confidence 9 999999 999999999999999998754 677776433 226788889999998886653322211
Q ss_pred --ccCCCCCCCCeeEEEE--cCe---EEEEeeCCCeEEEEEecC
Q 014104 389 --DRIPKTIRPPITCLAV--GMK---KVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 389 --~~~~~~h~~~v~~v~~--~~~---~l~t~~~Dg~v~vw~~~~ 425 (430)
......|...|.+++| ++. .+++++.+|.+.+|+++.
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 376 ETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp TSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 1123467889999998 566 788888899999999875
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=293.79 Aligned_cols=242 Identities=18% Similarity=0.302 Sum_probs=215.4
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
...++.+|.+.|.+++| +++ +|++|+.|++|++||+.+++++..+.+| ..+..++|+|+++.++ ++.|+.|++||+
T Consensus 142 ~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~ 221 (410)
T 1vyh_C 142 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221 (410)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45688999999999999 455 9999999999999999999999998876 5677899999999998 889999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC--------------
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-------------- 243 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-------------- 243 (430)
.++..+ +..+... +..+.+.+++..+++|+.||+|++||+.++++...+.+|...|.+++|+|
T Consensus 222 ~~~~~~~~~~~h~~~-v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 222 QTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTCCEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCcEEEEEeCCCcc-EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 988743 3333333 23344555566699999999999999999999999999999999999997
Q ss_pred -------CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC
Q 014104 244 -------DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 244 -------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
+.++++|+.|+.|++||+++++++..+.+ |...|.+++|+|+|++|++|+.|+.|++||+++++++..+.+|
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h 379 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEEC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCC
Confidence 45899999999999999999999999987 8889999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 317 PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
...|++++ |+|++.+|++|+.||+|++|+++
T Consensus 380 ~~~v~~l~-~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 380 EHFVTSLD-FHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SSCEEEEE-ECSSSSCEEEEETTSEEEEEC--
T ss_pred CCcEEEEE-EcCCCCEEEEEeCCCcEEEEeCC
Confidence 99999999 99999999999999999999863
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=298.59 Aligned_cols=315 Identities=18% Similarity=0.188 Sum_probs=251.5
Q ss_pred cccceeEEEe-cCC--eEEEE----------eCCCeEEEEecCCCe---eEEeeecCCceeEEEEecCCCEEE-EEeCCe
Q 014104 111 HSVGVDQCRM-KRG--LILTG----------VGDKVMRLWSLEGYK---CVEEYSLPNAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 111 h~~~v~~~~~-~~~--~l~s~----------~~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
+...|.+++| +++ ++++| +.|+.|++||+.+++ .+..+.+...+..++|++++++|+ ++.|+.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCe
Confidence 4457889999 554 89999 899999999999875 455565667788899999999999 788999
Q ss_pred EEEEEcCC---Cc-c--cccCCCCceeeeeEEEEc-CCceEEEecCCeEEEEECCCCe------eeE---EeecCCCCeE
Q 014104 174 ICIWRRNG---LR-S--VFPSREGTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRK------CSQ---IIRMHCAPVT 237 (430)
Q Consensus 174 i~vwd~~~---~~-~--~~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~------~~~---~~~~~~~~i~ 237 (430)
|++||+.+ +. . .+..+... +..+++.+. +..+++++.||.|++||+.+++ ... .+..|...|.
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~ 169 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSS-VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVI 169 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSC-CCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCC
T ss_pred EEEeecccccccccchhhccCCccc-eEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCee
Confidence 99999987 22 2 22333332 334555555 5569999999999999999876 332 3367889999
Q ss_pred EEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC-----CCCeEEEEEecCC-CEEEEEeCCC---eEEEEeCCC
Q 014104 238 SLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD-----CTGIKTLCYNPCS-RLVFAGTTAG---YASCWDLRT 306 (430)
Q Consensus 238 ~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~-~~l~~~~~dg---~i~i~d~~~ 306 (430)
+++|+|+ .++++++.|+.|++||+++++.+..+..+. ...|.+++|+|++ .++++++.|+ .|++||+++
T Consensus 170 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~ 249 (416)
T 2pm9_A 170 SLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRN 249 (416)
T ss_dssp EEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTS
T ss_pred EEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCC
Confidence 9999975 789999999999999999999998888632 6789999999997 6899999998 999999998
Q ss_pred C-ceeeeee-cCCCceEEEEEeeC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc-----------eeeeccCCc
Q 014104 307 M-KSLWETR-ISPNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA-----------SSSSNKVSG 372 (430)
Q Consensus 307 ~-~~~~~~~-~~~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----------~~~~~s~d~ 372 (430)
+ +++..+. +|...|.+++ |+| ++++|++++.||.|++||+.+++++..+..|...+ .+++++.|+
T Consensus 250 ~~~~~~~~~~~~~~~v~~~~-~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~ 328 (416)
T 2pm9_A 250 ANTPLQTLNQGHQKGILSLD-WCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328 (416)
T ss_dssp TTSCSBCCCSCCSSCEEEEE-ECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSS
T ss_pred CCCCcEEeecCccCceeEEE-eCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCC
Confidence 6 6777788 8999999999 999 99999999999999999999999999998876644 566677777
Q ss_pred eEEEeecccccCCcccc-------------------------------cCCCCCCCCeeEEEE--cCeEEEEeeCCCeEE
Q 014104 373 VIERNEGRRLSAGCCID-------------------------------RIPKTIRPPITCLAV--GMKKVVTTHNSKYIR 419 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~-------------------------------~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~ 419 (430)
.+.+|+........... ..+..|..++++++| +|++|++|+.|+.|+
T Consensus 329 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~ 408 (416)
T 2pm9_A 329 KIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVS 408 (416)
T ss_dssp EEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBC
T ss_pred cEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEE
Confidence 77777765443221110 112236777877777 799999999999999
Q ss_pred EEEecCCC
Q 014104 420 LWKFNYSD 427 (430)
Q Consensus 420 vw~~~~~~ 427 (430)
||++.+++
T Consensus 409 ~w~~~~~~ 416 (416)
T 2pm9_A 409 ITNPKISG 416 (416)
T ss_dssp CBCCCCC-
T ss_pred EEEeccCC
Confidence 99998753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=284.65 Aligned_cols=305 Identities=14% Similarity=0.160 Sum_probs=229.7
Q ss_pred EeEEEEeccccceeEEEe-cCC--eEEEEeC---CCeEEEEecCCCeeEEe--eecCCceeEEEEecC---CCEEE-EEe
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG--LILTGVG---DKVMRLWSLEGYKCVEE--YSLPNAASLVDFDFD---ESKIV-GLI 170 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~---dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~---~~~l~-~~~ 170 (430)
.....+.+|.+.|.+++| +++ ++++|+. ||.|++||+.+++.... +.+...+..++|+|+ +..++ ++.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 344567899999999999 445 5566766 99999999998876544 344567888999998 58887 888
Q ss_pred CCeEEEEEcCCCc-c--cccCCCCceeeeeE------EEEcCCceEEEecCCeEEEEECCCCe-eeEEeecCCC----Ce
Q 014104 171 GTRICIWRRNGLR-S--VFPSREGTFMKGLC------MRYFDPEAVVGCEDGTARVFDMYSRK-CSQIIRMHCA----PV 236 (430)
Q Consensus 171 ~~~i~vwd~~~~~-~--~~~~~~~~~~~~~~------~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~----~i 236 (430)
|+.|++||+.+++ . .+..+...+ ..+. +.+.+..+++++.||.|++||+++++ .+..+..|.+ .+
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEII-NAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCE-EEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCeEEEEeCCCCCccEEEEEecccce-EEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 9999999999876 2 233333332 2222 23456679999999999999999887 6777776655 89
Q ss_pred EEEE----ecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec---CCCEEEEEeCCCeEEEEeCCCCc
Q 014104 237 TSLS----LSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP---CSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 237 ~~~~----~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
.+++ |+|+ .++++++.||.|++||+++++...... +...|.+++|+| ++++|++++.||.|++||+++++
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 245 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN--IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH 245 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC--CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence 9998 5654 899999999999999999988865544 778999999999 99999999999999999999887
Q ss_pred eeeeee-----cCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 309 SLWETR-----ISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 309 ~~~~~~-----~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
.+..+. +|...|.+++ |+|+++ +|++++.||.|++||+.++............. ...+...
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~-----~~~~~~~------- 312 (357)
T 3i2n_A 246 PTKGFASVSEKAHKSTVWQVR-HLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM-----GVAGSVS------- 312 (357)
T ss_dssp TTTEEEEEEEECCSSCEEEEE-EETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC-----CCCCEEE-------
T ss_pred cccceeeeccCCCcCCEEEEE-ECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc-----ccccccc-------
Confidence 766555 8999999999 999998 89999999999999998765443221111000 0000100
Q ss_pred cCCcccccCCCCCCCCeeEEEE--cCeEEE-EeeCCCeEEEEEecCCCc
Q 014104 383 SAGCCIDRIPKTIRPPITCLAV--GMKKVV-TTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~--~~~~l~-t~~~Dg~v~vw~~~~~~~ 428 (430)
......+|...|++++| ++++|+ +++.||.|++|++.+.+.
T Consensus 313 -----~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 313 -----LLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp -----EEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred -----eeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 01112457789999999 477787 899999999999987654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=304.60 Aligned_cols=299 Identities=9% Similarity=0.000 Sum_probs=217.6
Q ss_pred EEEeCCCeEEEEecCCCeeE----EeeecC-CceeEEEEecC------CCEEE-EEeCCeEEEEEcCCCccc------c-
Q 014104 126 LTGVGDKVMRLWSLEGYKCV----EEYSLP-NAASLVDFDFD------ESKIV-GLIGTRICIWRRNGLRSV------F- 186 (430)
Q Consensus 126 ~s~~~dg~i~iwd~~~~~~~----~~~~~~-~~~~~~~~~~~------~~~l~-~~~~~~i~vwd~~~~~~~------~- 186 (430)
++++.|++|+|||+.+++.. ..+.++ +.+..++|+|+ +..|+ ++.|++|++||+.++... .
T Consensus 177 aS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~ 256 (524)
T 2j04_B 177 DKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE 256 (524)
T ss_dssp -----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC
T ss_pred ccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec
Confidence 44567899999999877642 334554 56788999997 46788 888999999999866421 0
Q ss_pred ---cCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCe-eeEEeecCCCCeEEE--EecCC--CEEEEEeCCCeEE
Q 014104 187 ---PSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRK-CSQIIRMHCAPVTSL--SLSED--QLIISGSSLGSIA 257 (430)
Q Consensus 187 ---~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~i~~~--~~~~~--~~l~~~~~dg~i~ 257 (430)
....++...+.++.+.. ..|++|+.||+|++||+++++ +...+.+|.+.|+++ .++++ .+|++|+.|++|+
T Consensus 257 ~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 257 KPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp SCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred CceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 01112223344555433 359999999999999998764 456788999999999 46664 6899999999999
Q ss_pred EEeCCCCceeEEEecCCC-CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 258 ISGLSSDQRVATLRSTDC-TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+||+++++....+.++.. ..|.+++|+|+++.+++++.|++|++||++++.++..+.+|.+.|++++ |+|++++|++|
T Consensus 337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva-~Sp~g~~l~Sg 415 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIG-VSRLHPMVLAG 415 (524)
T ss_dssp EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEE-CCSSCCBCEEE
T ss_pred EEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEE-eCCCCCeEEEE
Confidence 999999888777765322 2588999999999999999999999999999998888999999999999 99999999999
Q ss_pred cCCCeEEEEEcCCCceEEEEEe-----ccCcceeeeccCCceE-EEeecccc---cCCcccccCCCCCCCCeeEEEEcC-
Q 014104 337 GIDGVLRVLDQNTGEVLSRCVM-----DIGSASSSSNKVSGVI-ERNEGRRL---SAGCCIDRIPKTIRPPITCLAVGM- 406 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~s~d~~v-~~~~~~~~---~~~~~~~~~~~~h~~~v~~v~~~~- 406 (430)
+.||+|++||+..+ .+..+.. +...+..+++++++.+ ..++...+ ...........+|...|++|+|++
T Consensus 416 s~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~ 494 (524)
T 2j04_B 416 SADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNET 494 (524)
T ss_dssp ETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCS
T ss_pred ECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCC
Confidence 99999999998753 2222111 1112346788888874 33332222 111122233467999999999953
Q ss_pred ----eEEEEeeCCCeEEEEEecCC
Q 014104 407 ----KKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 407 ----~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..+++|+.||.||||++...
T Consensus 495 ~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 495 SAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp TTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCccHHHHhhccCceEEEEEcccc
Confidence 38999999999999998754
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-37 Score=305.37 Aligned_cols=304 Identities=17% Similarity=0.209 Sum_probs=238.1
Q ss_pred ccCCEeEEEEeccccceeEEEec-CC--eEEEEeCCCeEEEEecCCC-----eeEEeeecC-CceeEEEEecCCCEEE-E
Q 014104 99 EEGRIDIDQWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSLEGY-----KCVEEYSLP-NAASLVDFDFDESKIV-G 168 (430)
Q Consensus 99 ~~~~~~~~~l~~h~~~v~~~~~~-~~--~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~l~-~ 168 (430)
..+......+++|.+.|++++++ ++ +|+||+.|++|++||+.+. .....+.+| ..+..++|++++++|+ +
T Consensus 369 ~~~l~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sg 448 (694)
T 3dm0_A 369 AAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSG 448 (694)
T ss_dssp HCSSEEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred hcccchhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEE
Confidence 34455667899999999999994 33 8999999999999998753 345666766 5677899999999999 8
Q ss_pred EeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecC
Q 014104 169 LIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSE 243 (430)
Q Consensus 169 ~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~ 243 (430)
+.|+.|++||+.++... +..|... +..+++.+++..+++++.|++|++||.......... .+|...|.+++|+|
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~ 527 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFVGHTKD-VLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSP 527 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCSSC-EEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECS
T ss_pred eCCCcEEEEECCCCcceeEEeCCCCC-EEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeC
Confidence 88999999999987643 3444444 344566667777999999999999998654333222 46888999999997
Q ss_pred C---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCce
Q 014104 244 D---QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVV 320 (430)
Q Consensus 244 ~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v 320 (430)
+ ..+++|+.|++|++||+++++....+.+ |...|++++|+|++++|++|+.||.|++||+++++.+..+..+ ..|
T Consensus 528 ~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v 605 (694)
T 3dm0_A 528 NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVI 605 (694)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCE
T ss_pred CCCcceEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcE
Confidence 5 4799999999999999999999999887 8889999999999999999999999999999999988887654 679
Q ss_pred EEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCee
Q 014104 321 YSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPIT 400 (430)
Q Consensus 321 ~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~ 400 (430)
.+++ |+|++.+|++++ ++.|++||+++++.+..+..+....... ....+ ......+...++
T Consensus 606 ~~~~-~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~----------------~~~~~~~~~~~~ 666 (694)
T 3dm0_A 606 HALC-FSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEK-ADNSG----------------PAATKRKVIYCT 666 (694)
T ss_dssp EEEE-ECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------------------------------CCCCEE
T ss_pred EEEE-EcCCCcEEEEEc-CCCEEEEECCCCCChhhhcccccccccc-ccccc----------------cccCCceeEEee
Confidence 9998 999998887765 5679999999999988886543311000 00000 000012233578
Q ss_pred EEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 401 CLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 401 ~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
+++| +|++|+||+.||+|+||++.
T Consensus 667 ~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 667 SLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred eEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 8888 69999999999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=284.82 Aligned_cols=292 Identities=13% Similarity=0.135 Sum_probs=239.9
Q ss_pred ccCCEeEEEEecccccee--EEEecCCeEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCEEE-EEeCCe
Q 014104 99 EEGRIDIDQWKAHSVGVD--QCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 99 ~~~~~~~~~l~~h~~~v~--~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
......+....+|.+.+. ++.++++.+++++.|+.|++||+.+++....+.. ...+..++|+|++++|+ ++.+|.
T Consensus 78 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 157 (401)
T 4aez_A 78 NTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGL 157 (401)
T ss_dssp CCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred CCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCe
Confidence 334445666678887654 4566667888999999999999999998888776 35678899999999998 888999
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC-CCeeeEEeecCCCCeEEEEecCC-CEEEEEe
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
|++||+++++.+.... ++...+.++.+.+..+++++.||.|++||++ .+..+..+.+|.+.|.+++|+|+ .++++|+
T Consensus 158 i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~ 236 (401)
T 4aez_A 158 VDIYDVESQTKLRTMA-GHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG 236 (401)
T ss_dssp EEEEETTTCCEEEEEC-CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECcCCeEEEEec-CCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 9999999877433221 3333456667777789999999999999998 46678889999999999999976 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC-EEEEEe--CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR-LVFAGT--TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
.|+.|++||+++++.+..+.. |...|.+++|+|++. ++++|+ .|+.|++||+++++.+..+. +...|.+++ |+|
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~-~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~-~s~ 313 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLI-WSP 313 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECC-CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEE-ECS
T ss_pred CCCeEEEccCCCCCccEEecC-CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEE-ECC
Confidence 999999999999999988876 888999999999774 566655 79999999999999988886 557899999 999
Q ss_pred CCCeEEE--EcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--
Q 014104 329 DTSTLVV--GGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-- 404 (430)
Q Consensus 329 ~~~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-- 404 (430)
+++++++ |+.||.|++||+.+++....... .+|...|++++|
T Consensus 314 ~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~----------------------------------~~h~~~v~~~~~s~ 359 (401)
T 4aez_A 314 HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI----------------------------------PAHDTRVLYSALSP 359 (401)
T ss_dssp SSSEEEEEECTTTCEEEEEEEETTEEEEEEEE----------------------------------ECCSSCCCEEEECT
T ss_pred CCCeEEEEeecCCCcEEEEecCCccceeEEEe----------------------------------cCCCCCEEEEEECC
Confidence 9999999 44899999999998766555432 235568899988
Q ss_pred cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 405 GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 405 ~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
++++|++++.||.|++|++.+++.
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~~~ 383 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDGDH 383 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC---
T ss_pred CCCEEEEEeCCCcEEEEECCCCcc
Confidence 588999999999999999998764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-37 Score=275.28 Aligned_cols=246 Identities=13% Similarity=0.178 Sum_probs=208.2
Q ss_pred eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 143 KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
+..+++.+| +.+..++|+|++..|+ ++.|+.|++||++++..+ +..+.. ......+.+.+..+++|+.|++|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTET-PVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCC-cEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 345566665 5688899999999999 888999999999988643 333333 34556777788889999999999999
Q ss_pred ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce-eEEEecCCCCCeEEEEEec-CCCEEEEEeC
Q 014104 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR-VATLRSTDCTGIKTLCYNP-CSRLVFAGTT 295 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 295 (430)
|+.+++++..+.+|.+.|.+++|+|+ .++++|+.|++|++||++++.. ...+.+ |...|.+++|+| ++..|++|+.
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~sgs~ 161 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-HEHFVMCVAFNPKDPSTFASGCL 161 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-CCSCEEEEEECTTCTTEEEEEET
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-cCCcEEEEEECCCCCCEEEEEeC
Confidence 99999999999999999999999986 7999999999999999998744 455665 888999999999 6789999999
Q ss_pred CCeEEEEeCCCCceeeeee-cCCCceEEEEEeeC--CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 296 AGYASCWDLRTMKSLWETR-ISPNVVYSLQHLQN--DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~s~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
|++|++||++++.....+. +|...+..+. ++| ++.+|++|+.|++|++||+++++++.++.+|.
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~------------ 228 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVD-YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM------------ 228 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEE-ECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS------------
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEE-EEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC------------
Confidence 9999999999877766654 4557788887 665 77899999999999999999999999887644
Q ss_pred eEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..|++++| ++.+|++|+.||+|++||+.+++
T Consensus 229 ------------------------~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 229 ------------------------SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp ------------------------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred ------------------------CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 47888888 46789999999999999998765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=278.25 Aligned_cols=239 Identities=14% Similarity=0.126 Sum_probs=196.5
Q ss_pred eccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeee----cC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCC
Q 014104 109 KAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS----LP-NAASLVDFDFDESKIV-GLIGTRICIWRRNG 181 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~ 181 (430)
..|...|.+++| +++.|++|+.||+|+|||+.+++.+.... +| ..+..++|+|++++|+ ++.|+.|++||+++
T Consensus 79 ~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 79 VQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EEESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 346678999999 55699999999999999999887654433 34 5678899999999999 88999999999998
Q ss_pred Cccc--ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC--CEEEEEeCCC
Q 014104 182 LRSV--FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED--QLIISGSSLG 254 (430)
Q Consensus 182 ~~~~--~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~--~~l~~~~~dg 254 (430)
++.+ +..|... +..+++.+.+.. +++++.||+|++||++++++...+. .|...+.+++|+|+ .++++|+.||
T Consensus 159 ~~~~~~~~~h~~~-V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg 237 (344)
T 4gqb_B 159 QVVLSSYRAHAAQ-VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG 237 (344)
T ss_dssp TEEEEEECCCSSC-EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred CcEEEEEcCcCCc-eEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence 8753 3344433 233445555544 7899999999999999999887764 45567999999974 6899999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-e
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-T 332 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~ 332 (430)
+|++||+++++++..+.+ |...|++++|+|++ ++|++|+.|++|++||+++++.+ .+.+|.+.|++++ |+|+++ +
T Consensus 238 ~v~~wd~~~~~~~~~~~~-h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~-~sp~~~~l 314 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAV-HSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDAT-WSPLNHSL 314 (344)
T ss_dssp EEEEEESCC--CCEEEEC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEE-ECSSSTTE
T ss_pred cEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEE-EeCCCCeE
Confidence 999999999999999988 88899999999998 57999999999999999988765 5789999999999 999987 5
Q ss_pred EEEEcCCCeEEEEEcCCCc
Q 014104 333 LVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~ 351 (430)
|++++.||+|++|++.+..
T Consensus 315 las~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 315 LTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp EEEEETTSCEEEEECCC--
T ss_pred EEEEcCCCeEEEEECCCCC
Confidence 6789999999999998654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=322.24 Aligned_cols=318 Identities=15% Similarity=0.216 Sum_probs=261.1
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
....+.+|.+.|++++| +++ ++++|+.||+|++||+.+++.+..+.+| ..+..++|+|++++++ ++.|+.|++||+
T Consensus 607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 34578899999999999 556 9999999999999999999999999876 5677899999999999 888999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCC--ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDP--EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
.+++.+ +..+... +..+++.+.+. .+++|+.||.|++||+.+++++..+.+|.+.|.+++|+|+ +.+++++.||
T Consensus 687 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg 765 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADG 765 (1249)
T ss_dssp TTCCEEEEEECCSSC-EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSS
T ss_pred CCCceEEEEcCCCCc-EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCC
Confidence 988753 3333333 23344444223 4889999999999999999999999999999999999986 8999999999
Q ss_pred eEEEEeCCCCceeEEEe------------------------------------------------------cCCCCCeEE
Q 014104 255 SIAISGLSSDQRVATLR------------------------------------------------------STDCTGIKT 280 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~------------------------------------------------------~~~~~~v~~ 280 (430)
.|++||+.+++....+. ..|...|.+
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 99999998776544332 136678999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC----------
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG---------- 350 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~---------- 350 (430)
++|+|+++++++++.||.|++||+.+++.+..+.+|.+.|.+++ |+|++++|++++.||.|++||+.++
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~-~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 924 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM-FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 924 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEE-ECCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Confidence 99999999999999999999999999999999999999999999 9999999999999999999997531
Q ss_pred -------------------------------------ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCC
Q 014104 351 -------------------------------------EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 351 -------------------------------------~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
..+..+...+.+..+++++.+|.+.+++... +... ....
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~---~~~~-~~~~ 1000 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVF-SSGV 1000 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT---TSCE-EECC
T ss_pred eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC---Ccee-eecc
Confidence 1122333344455677777888777766533 2222 2335
Q ss_pred CCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 394 TIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 394 ~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
+|...|++++| ++++|++++.||.|++|++.+++
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 78999999999 68899999999999999998764
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=291.19 Aligned_cols=310 Identities=12% Similarity=0.081 Sum_probs=219.9
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC--eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY--KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
.+..|.++|++++| +++ +|++|+.|+.|++||+.++ +.+..+..| ..+..++|+|++++|+ ++.|+.|++||+.
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 34557889999999 455 9999999999999999988 677777766 5678899999999998 8889999999999
Q ss_pred CCc---cc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe---eeEEeec-CCCCeEEEEecCC-CEEEEE
Q 014104 181 GLR---SV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRM-HCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 181 ~~~---~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~-~~~~i~~~~~~~~-~~l~~~ 250 (430)
+++ .. +..+.. ....+++.+++..+++++.|+.|++||+++++ ....+.. |...|.+++|+|+ ++++++
T Consensus 86 ~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 86 PDGTWKQTLVLLRLNR-AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ---CCCCEEECCCCSS-CEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCceeeeeEecccCC-ceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 876 22 222332 23445555566779999999999999999887 4677777 9999999999986 799999
Q ss_pred eCCCeEEEEeCC------------------CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce---
Q 014104 251 SSLGSIAISGLS------------------SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS--- 309 (430)
Q Consensus 251 ~~dg~i~vwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--- 309 (430)
+.|+.|++||++ .++.+..+ . |...|.+++|+|++++|++++.||.|++||+++++.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~ 242 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P-SGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPR 242 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C-CSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c-CCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcce
Confidence 999999999985 34455556 3 888999999999999999999999999999999887
Q ss_pred -eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc--eEEEEEeccCcce---------------eeeccCC
Q 014104 310 -LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE--VLSRCVMDIGSAS---------------SSSNKVS 371 (430)
Q Consensus 310 -~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~---------------~~~~s~d 371 (430)
+..+.+|...|.+++ |+|++++|++++.++.+ +|+...+. ....+........ ...++..
T Consensus 243 ~~~~~~~~~~~v~~~~-~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (377)
T 3dwl_C 243 ALITVKLSQLPLRSLL-WANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTAL 320 (377)
T ss_dssp ECCCEECSSSCEEEEE-EEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred eeEeecCCCCceEEEE-EcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccc
Confidence 888999999999999 99999999999877666 66655321 1122211111000 0000000
Q ss_pred ceEEEeeccccc-CCcccccCCCCCCCCeeEEEEc---Ce---EEEEeeCCCeEEEEEe
Q 014104 372 GVIERNEGRRLS-AGCCIDRIPKTIRPPITCLAVG---MK---KVVTTHNSKYIRLWKF 423 (430)
Q Consensus 372 ~~v~~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~~---~~---~l~t~~~Dg~v~vw~~ 423 (430)
.... ...... .......+...|...|+++++. +. .|+|||.||.|+|||+
T Consensus 321 ~~~~--~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 321 RSTF--RNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccc--cchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000 000000 0012233456799999999972 22 6999999999999985
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=269.29 Aligned_cols=247 Identities=15% Similarity=0.197 Sum_probs=198.1
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC--CeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG--YKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
..+.+|.+.|++++| +++ +|++|+.|++|++||+.+ .+.+.++.+| ..+..++|+++.
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~----------------- 65 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK----------------- 65 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-----------------
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-----------------
Confidence 467899999999999 456 999999999999999874 3566677665 334445554320
Q ss_pred CCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecC---CCEEEEEeCCCe
Q 014104 181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSE---DQLIISGSSLGS 255 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~---~~~l~~~~~dg~ 255 (430)
.+..|++|+.||+|++||+++++ .+..+.+|...|.+++|+| +.++++++.|+.
T Consensus 66 ---------------------~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~ 124 (297)
T 2pm7_B 66 ---------------------FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124 (297)
T ss_dssp ---------------------GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred ---------------------cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence 12237889999999999998774 5667788999999999997 469999999999
Q ss_pred EEEEeCCCCce--eEEEecCCCCCeEEEEEecC-------------CCEEEEEeCCCeEEEEeCCCCc----eeeeeecC
Q 014104 256 IAISGLSSDQR--VATLRSTDCTGIKTLCYNPC-------------SRLVFAGTTAGYASCWDLRTMK----SLWETRIS 316 (430)
Q Consensus 256 i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~ 316 (430)
|++||++++.. ...+.+ |...|.+++|+|+ +++|++|+.|++|++||+++++ ....+.+|
T Consensus 125 v~~wd~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H 203 (297)
T 2pm7_B 125 VSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (297)
T ss_dssp EEEEEBCSSSCBCCEEEEC-CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEEEEecCCCceeeeeeec-ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence 99999987632 345555 8889999999997 5799999999999999998765 56678899
Q ss_pred CCceEEEEEeeCCC---CeEEEEcCCCeEEEEEcCCCce--EEEEEeccCcceeeeccCCceEEEeecccccCCcccccC
Q 014104 317 PNVVYSLQHLQNDT---STLVVGGIDGVLRVLDQNTGEV--LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391 (430)
Q Consensus 317 ~~~v~~l~~~s~~~---~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~ 391 (430)
.+.|.+++ |+|++ .+|++++.|++|++||++++.. ......
T Consensus 204 ~~~V~~v~-~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~--------------------------------- 249 (297)
T 2pm7_B 204 SDWVRDVA-WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLK--------------------------------- 249 (297)
T ss_dssp SSCEEEEE-ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS---------------------------------
T ss_pred CCceEEEE-ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeee---------------------------------
Confidence 99999999 99985 8999999999999999976431 111100
Q ss_pred CCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 392 PKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 392 ~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
...|...|.+++| ++++|++++.||+|+||+...
T Consensus 250 ~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 250 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 1245678999999 588999999999999999874
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-37 Score=280.61 Aligned_cols=281 Identities=12% Similarity=0.146 Sum_probs=227.5
Q ss_pred EEeccccceeEEEecC-----C-eEEEEeCCCeEEEEecCCCeeEEeeec------CCceeEEEEecC----CCEEE-EE
Q 014104 107 QWKAHSVGVDQCRMKR-----G-LILTGVGDKVMRLWSLEGYKCVEEYSL------PNAASLVDFDFD----ESKIV-GL 169 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~-----~-~l~s~~~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~~~----~~~l~-~~ 169 (430)
...+|.++|++++|++ . .+++++.++.|++||+.+++.+..+.. ...+..++|+++ +.+|+ ++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 3458999999999952 3 677777788999999998877766652 255788999998 55777 88
Q ss_pred eCCeEEEEEcCCCccc--ccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecC
Q 014104 170 IGTRICIWRRNGLRSV--FPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSE 243 (430)
Q Consensus 170 ~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~ 243 (430)
.|+.|++||+.+++.+ +..+... +..+++.+ .+..+++++.||.|++||+++++.+..+ ..|...|.+++|+|
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNA-INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDL 171 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSC-EEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECT
T ss_pred CCCEEEEEEchhceEeeeecCCCCc-EEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECC
Confidence 9999999999987753 3333332 34455555 5556999999999999999999998888 68999999999997
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCceeEEEe---------------------------cCCCCCeEEEEEecCCCEEEEEeC
Q 014104 244 D-QLIISGSSLGSIAISGLSSDQRVATLR---------------------------STDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 244 ~-~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------------~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
+ +++++++.||.|++||+++++....+. ..|...|.+++|+ ++++++++.
T Consensus 172 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~ 249 (366)
T 3k26_A 172 LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC 249 (366)
T ss_dssp TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS
T ss_pred CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec
Confidence 6 799999999999999999876543222 1277799999998 779999999
Q ss_pred CCeEEEEeCCCCce--------------eeeeecCCCceEEEEEeeCC--CCeEEEEcCCCeEEEEEcCCCceEE----E
Q 014104 296 AGYASCWDLRTMKS--------------LWETRISPNVVYSLQHLQND--TSTLVVGGIDGVLRVLDQNTGEVLS----R 355 (430)
Q Consensus 296 dg~i~i~d~~~~~~--------------~~~~~~~~~~v~~l~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~~----~ 355 (430)
|+.|++||+++++. +..+..|...|.+++ |+|+ +++|++|+.||.|++||+.+++... .
T Consensus 250 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 250 ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR-FSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC-CEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE-EcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 99999999987644 677888999999999 9999 9999999999999999999876432 3
Q ss_pred EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
+..| .|...|++++| ++++|++|+.||.|++||+.+
T Consensus 329 ~~~~----------------------------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 329 LTHH----------------------------------KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp ECCT----------------------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred Eccc----------------------------------ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 3321 13578999999 589999999999999999853
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=302.55 Aligned_cols=267 Identities=16% Similarity=0.203 Sum_probs=235.2
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
..+.+.+|.+.|.+++| |++ +|++|+.||.|++||+.+++.+..+..+ ..+..++|+|+++.|+ ++.|+.|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEEC
Confidence 45688999999999999 556 9999999999999999999999999865 5678899999999999 888999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecC-C-CEEEEEeCCC
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSE-D-QLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg 254 (430)
.+++.. +..+.+ ....+++.+.++.+++++.||.|++||+.++ .....+.+|...|.+++|+| + ..+++++.||
T Consensus 85 ~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 163 (814)
T 3mkq_A 85 NTGEKVVDFEAHPD-YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163 (814)
T ss_dssp TTCCEEEEEECCSS-CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCcEEEEEecCCC-CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence 988754 333333 3455677777888999999999999999887 67788889999999999998 5 7999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEec--CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNP--CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
.|++||+.+++....+..++...+.+++|+| ++.+|++++.||.|++||+++++.+..+.+|...|.+++ |+|++++
T Consensus 164 ~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~-~~~~~~~ 242 (814)
T 3mkq_A 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHPTLPI 242 (814)
T ss_dssp EEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEE-ECSSSSE
T ss_pred eEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCCE
Confidence 9999999999888888875668999999999 999999999999999999999999999999999999999 9999999
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
|++++.||.|++||+.+++.+..+..+...+..+++++++
T Consensus 243 l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp EEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCC
Confidence 9999999999999999999999888776666555555554
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-36 Score=292.92 Aligned_cols=316 Identities=14% Similarity=0.116 Sum_probs=243.4
Q ss_pred EeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeeecCC----ceeEEEEecC-CCEEE-EEeCCe
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLPN----AASLVDFDFD-ESKIV-GLIGTR 173 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~-~~~l~-~~~~~~ 173 (430)
..+..+.+|.+.|.+++| +++ .+++++.|+.|++||+.+++.+..+..+. .+..++|+|+ ++.++ ++.++.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 357788999999999999 454 79999999999999999999999998764 4788999999 99988 888999
Q ss_pred EEEEEcCCCcccccC-----CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC----CCCeEEEEecCC
Q 014104 174 ICIWRRNGLRSVFPS-----REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH----CAPVTSLSLSED 244 (430)
Q Consensus 174 i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~~~~ 244 (430)
|++||+.+++.+... ........+++. .+..+++++.||.|++||+++++.+..+..+ ...+.++.+..+
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 309 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCC
Confidence 999999988754433 222223334444 6666999999999999999999999888876 367888888766
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC--------------------------------------
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC-------------------------------------- 286 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------------------------- 286 (430)
+.+++++.|+.|++||+.+++.+..+.+ |...|.+++| |+
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~ 387 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISG-HNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYS 387 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECC-CSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCE
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeC-CCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEE
Confidence 8999999999999999998887777765 4444444443 22
Q ss_pred --------------------------------------------------------------------CCEEEEEeC-CC
Q 014104 287 --------------------------------------------------------------------SRLVFAGTT-AG 297 (430)
Q Consensus 287 --------------------------------------------------------------------~~~l~~~~~-dg 297 (430)
+++|++++. |+
T Consensus 388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 344455555 66
Q ss_pred eEEEEeCCCCcee-eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe-ccCcc------------
Q 014104 298 YASCWDLRTMKSL-WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM-DIGSA------------ 363 (430)
Q Consensus 298 ~i~i~d~~~~~~~-~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~------------ 363 (430)
.|++||+.+++.. ..+..|...|.+++ |+|++++|++++.||.|++||+.+++.+..+.. |...+
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~ 546 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYIS-ISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA 546 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred eEEEEECCCccccccccCCccCceEEEE-ECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccc
Confidence 6666666655443 56677889999999 999999999999999999999998887777655 54444
Q ss_pred --------eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 364 --------SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 364 --------~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+++++.|+.+.+|+... .........+|...|++++| +++ |++++.||.|++|+++.+
T Consensus 547 ~~~~~~~~~l~~~~~dg~i~iw~~~~---~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 547 NEEEIEEDLVATGSLDTNIFIYSVKR---PMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp ---CCSCCEEEEEETTSCEEEEESSC---TTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred cccccCCCEEEEEcCCCcEEEEECCC---CceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 445555566666665533 21233334679999999999 688 999999999999999763
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=269.81 Aligned_cols=243 Identities=21% Similarity=0.293 Sum_probs=205.7
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
.++..+.+|...|.+++| +++ +|++|+.|++|++||+.+++.+..+.+| ..+..++|++++..++ ++.|+.|++||
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWT 135 (319)
T ss_dssp EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence 357789999999999999 555 9999999999999999999999999876 5577899999999999 88999999999
Q ss_pred cCCCcc-cccCCCCceeeeeEEEEc------CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 179 RNGLRS-VFPSREGTFMKGLCMRYF------DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
++.... .+..+... ...+.+.+. +..+++++.|+.|++||+++++....+.+|...|.+++|+|+ .+|++|
T Consensus 136 ~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~ 214 (319)
T 3frx_A 136 IKGQCLATLLGHNDW-VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASA 214 (319)
T ss_dssp TTSCEEEEECCCSSC-EEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCeEEEEeccCCc-EEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEE
Confidence 986543 23333332 223334332 225999999999999999999999999999999999999986 899999
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee--------cCCCceEE
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR--------ISPNVVYS 322 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~ 322 (430)
+.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.++ +++|++..+..+..+. .|...+.+
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred eCCCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence 9999999999999999998874 46899999999999999887655 9999998876665543 34567889
Q ss_pred EEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 323 LQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 323 l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
++ |+|+|++|++|+.||.|++||+.++
T Consensus 292 ~~-~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 292 LA-WSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EE-ECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EE-ECCCCCEEEEeecCceEEEEEEeec
Confidence 98 9999999999999999999998754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=271.26 Aligned_cols=248 Identities=15% Similarity=0.222 Sum_probs=213.5
Q ss_pred eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 143 KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
+...++.+| ..+..++|++++++|+ ++.|+.|++||+.+++.. +..+.. .+..+++.+.+..+++|+.|+.|++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSS-CEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCc-cEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 445666666 5678899999999999 889999999999887643 233333 23456666677779999999999999
Q ss_pred ECCCC----eeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 014104 219 DMYSR----KCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 219 d~~~~----~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
|+.++ +....+.+|.+.|.++.|+++..+++++.|++|++||+++++.+..+.+ |...|.+++|+|+++++++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCCEEEEEe
Confidence 99875 3566788999999999999888899999999999999999999999987 888999999999999999999
Q ss_pred CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceE
Q 014104 295 TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVI 374 (430)
Q Consensus 295 ~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v 374 (430)
.|+.|++||+++++.+..+.+|...|.+++ |+|++++|++|+.||+|++||+++++.+..+..+
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--------------- 267 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTGHESDINAIC-FFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------- 267 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT---------------
T ss_pred CCCcEEEEECCCCeeEEEEcCCcCCEEEEE-EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccC---------------
Confidence 999999999999999999999999999999 9999999999999999999999988877665421
Q ss_pred EEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 375 ERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+...|++++| ++++|++|+.||.|++||+.+++
T Consensus 268 -------------------~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 268 -------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp -------------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred -------------------CcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 12347899999 58999999999999999987765
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=305.18 Aligned_cols=203 Identities=9% Similarity=0.045 Sum_probs=169.8
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
...||.+.|++++| +++ +||+|+.||+|++||..+.+....+.+...+..++|+| +++|+ ++.|+.|++||+++++
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~ 90 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK 90 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCS
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc
Confidence 34589999999999 556 99999999999999999888777766667788999999 88777 8899999999999877
Q ss_pred ccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeee-----------EEeecCCCCeEEEEecCC--CEEEEE
Q 014104 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCS-----------QIIRMHCAPVTSLSLSED--QLIISG 250 (430)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~~~~~~~--~~l~~~ 250 (430)
.+........+..+++.+.+..+++|+.||.|++||++++++. ..+.+|.++|++++|+|+ ..+++|
T Consensus 91 ~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g 170 (902)
T 2oaj_A 91 VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS 170 (902)
T ss_dssp EEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence 5432222233455666667777999999999999999988754 234678899999999985 689999
Q ss_pred eCCCeEEEEeCCCCceeEEEecC-----------------CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 251 SSLGSIAISGLSSDQRVATLRST-----------------DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
+.||.| +||+++++.+..+..+ |...|.+++|+|+|++|++|+.||.|++||+++++++.
T Consensus 171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 999999 9999999998888752 24679999999999999999999999999999887764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=278.88 Aligned_cols=289 Identities=15% Similarity=0.194 Sum_probs=228.8
Q ss_pred EeEEEEeccccceeEEEe-c-CC-eEEEEeCCCeEEEEecCCCeeEEeee--------------cCCceeEEEEec-CCC
Q 014104 103 IDIDQWKAHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYS--------------LPNAASLVDFDF-DES 164 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~~-~~~ 164 (430)
.....+.+|.+.|++++| + ++ +|++|+.||.|++||+.+++....+. +...+..++|+| ++.
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 113 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG 113 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc
Confidence 345678899999999999 4 55 99999999999999999877665554 446678899999 666
Q ss_pred EEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCC---ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEE
Q 014104 165 KIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDP---EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 165 ~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 240 (430)
.++ ++.|+.|++||+.+++...............+.+.++ .+++++.||.|++||+++++.+..+..|.+.|.+++
T Consensus 114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 777 7789999999999887544333333344455555544 599999999999999999999999999999999999
Q ss_pred ecCC-C-EEEEEeCCCeEEEEeCCCCc-eeEEEe--------------cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEe
Q 014104 241 LSED-Q-LIISGSSLGSIAISGLSSDQ-RVATLR--------------STDCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303 (430)
Q Consensus 241 ~~~~-~-~l~~~~~dg~i~vwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d 303 (430)
|+|+ . ++++|+.||.|++||++++. .+..+. ..|...|.+++|+|++++|++++.||.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 9986 4 69999999999999998776 334331 23677999999999999999999999999999
Q ss_pred CCCCceeeeeecCC-----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEee
Q 014104 304 LRTMKSLWETRISP-----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNE 378 (430)
Q Consensus 304 ~~~~~~~~~~~~~~-----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~ 378 (430)
+++++....+..+. ..+.... ....+..+++++.++.|++||+.+++++..+..
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------------- 332 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTV-SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG-------------------- 332 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEE-CCSSSSCEEEEEETTEEEEEETTTCCEEEEECC--------------------
T ss_pred CCCCccceeccccccccccccceeEE-ecCCCceEEEEecCCEEEEEECcCCcceeeecc--------------------
Confidence 99887665443321 1122222 334456677778899999999999999988865
Q ss_pred cccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 379 GRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 379 ~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|...|++++| ++++|++|+.||.|++|++.+++.
T Consensus 333 ----------------~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 333 ----------------HYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp ----------------CSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ----------------CCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 4458889888 578899999999999999988764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=288.27 Aligned_cols=286 Identities=13% Similarity=0.116 Sum_probs=219.0
Q ss_pred EEEEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCCCeeEEe--eecC-CceeEEEEec-CCCEEE-EEeCCeEEE
Q 014104 105 IDQWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEE--YSLP-NAASLVDFDF-DESKIV-GLIGTRICI 176 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~--~~~~-~~~~~~~~~~-~~~~l~-~~~~~~i~v 176 (430)
.....+|...|+|++|+ ++ +||+|+.||+|+|||+.+++.... +.+| ..+..++|+| +++.|+ ++.|++|++
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34678899999999994 33 899999999999999987654433 3344 5688899998 678888 888999999
Q ss_pred EEcCCCcc-cccCCCCce--eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEe
Q 014104 177 WRRNGLRS-VFPSREGTF--MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGS 251 (430)
Q Consensus 177 wd~~~~~~-~~~~~~~~~--~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~ 251 (430)
||++++.. .+....... ...+++.+.+..+++|+.||.|++||++ ++.+..+.+|...|.+++|+|+ .++++|+
T Consensus 192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s 270 (435)
T 4e54_B 192 QDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATAS 270 (435)
T ss_dssp EETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEE
T ss_pred eeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEec
Confidence 99987653 223222222 2345566677779999999999999985 5677888999999999999975 5888999
Q ss_pred CCCeEEEEeCCCCceeEEEe--cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCC------ceEEE
Q 014104 252 SLGSIAISGLSSDQRVATLR--STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPN------VVYSL 323 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~------~v~~l 323 (430)
.|+.|++||+++++....+. ..|...|++++|+|+|++|++++.||.|++||+++++....+..|.. .+...
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 99999999999876544332 23788999999999999999999999999999999887776665542 22333
Q ss_pred EEeeCCCCeEEEEc------------CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccC
Q 014104 324 QHLQNDTSTLVVGG------------IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391 (430)
Q Consensus 324 ~~~s~~~~~l~s~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~ 391 (430)
. ++|++.++++++ .++.|++||..+++.+..+..
T Consensus 351 ~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~--------------------------------- 396 (435)
T 4e54_B 351 A-WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD--------------------------------- 396 (435)
T ss_dssp E-ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC---------------------------------
T ss_pred E-EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC---------------------------------
Confidence 4 667777666654 335799999999988877643
Q ss_pred CCCCCCCeeEE-EE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 392 PKTIRPPITCL-AV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 392 ~~~h~~~v~~v-~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
+|...|.++ +| +|++|++|+ |+.|+||+++.++.
T Consensus 397 --~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 397 --PESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp --SSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred --CCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 344567665 46 578888876 78999999998864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=271.32 Aligned_cols=276 Identities=11% Similarity=0.062 Sum_probs=229.0
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe----eEEeeecCCceeEEEEecCCC-EEE-EEeCCeEEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK----CVEEYSLPNAASLVDFDFDES-KIV-GLIGTRICIWR 178 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~i~vwd 178 (430)
...+|.+.|.+++| +++ +|++|+.||.|++||+.+++ ......+...+..++|+++++ .|+ ++.++.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 34689999999999 455 99999999999999998877 444444556788899999999 888 88899999999
Q ss_pred c-CCCccc-ccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCC---------CeeeEEeecCCCCeEEEEecCCC
Q 014104 179 R-NGLRSV-FPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS---------RKCSQIIRMHCAPVTSLSLSEDQ 245 (430)
Q Consensus 179 ~-~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~i~~~~~~~~~ 245 (430)
+ ++++.. +.. +.. .+..+++.+ +..+++++.|+.|++||+++ ++++..+. |...|.+++|+|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~-~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANL-GICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSEEECBSCCCCS-CEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred eccCCceEeccccCCCC-ceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 9 877643 233 333 334456666 67799999999999999988 77777776 88999999999776
Q ss_pred EEEEEeCCCeEEEEeCCC-Cce-eEEEecCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCC------ceeeeeecC
Q 014104 246 LIISGSSLGSIAISGLSS-DQR-VATLRSTDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTM------KSLWETRIS 316 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~ 316 (430)
+++++.|+.|++||+++ +.. .......+...+.+++|+| +++++++++.||.|++|+++.. +....+..|
T Consensus 163 -l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T 1yfq_A 163 -LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp -EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred -EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecc
Confidence 99999999999999998 553 2333334778999999999 9999999999999999999887 777788888
Q ss_pred CC---------ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 317 PN---------VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 317 ~~---------~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
.. .|.+++ |+|++++|++++.||.|++||+.+++.+..+..|
T Consensus 242 ~~~~~~~~~~~~i~~~~-~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------------- 292 (342)
T 1yfq_A 242 RLNLKDTNLAYPVNSIE-FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF---------------------------- 292 (342)
T ss_dssp CCCTTCCSSCCCEEEEE-ECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC----------------------------
T ss_pred cccccccccceeEEEEE-EcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc----------------------------
Confidence 65 999999 9999999999999999999999999888776543
Q ss_pred cccCCCCCCCCeeEEEEcCeEEEEeeCCCe-EEEEE
Q 014104 388 IDRIPKTIRPPITCLAVGMKKVVTTHNSKY-IRLWK 422 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~-v~vw~ 422 (430)
|...|++++.++++|++|+.||. .+.|.
T Consensus 293 -------h~~~v~~~~~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 293 -------NEDSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp -------SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred -------cCCCceEecCCCCeEEEEecCCccccccc
Confidence 25588888877999999999999 55554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-35 Score=269.01 Aligned_cols=276 Identities=11% Similarity=0.125 Sum_probs=210.1
Q ss_pred cceeEEEe-cCC-eEEEEeCCC-------eEEEEecCCCee--------EEeeec-CCceeEEEEecCCCEEE-EE----
Q 014104 113 VGVDQCRM-KRG-LILTGVGDK-------VMRLWSLEGYKC--------VEEYSL-PNAASLVDFDFDESKIV-GL---- 169 (430)
Q Consensus 113 ~~v~~~~~-~~~-~l~s~~~dg-------~i~iwd~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~l~-~~---- 169 (430)
-||++++| +++ +|++|+.|. .|++|++..+.. ...+.. .+...+++++++++.++ +.
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~~~~ 94 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGIILVGCNENS 94 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTEEEEECCCCH
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCEEEEEECCCc
Confidence 48999999 677 888887543 599999875432 122222 22334456677777776 32
Q ss_pred -------eCCeEEEEEcCCCcccc--------c--CCCCceeeeeEEEEcCCceEEE--ecCCeEEEEECCCCeeeEEee
Q 014104 170 -------IGTRICIWRRNGLRSVF--------P--SREGTFMKGLCMRYFDPEAVVG--CEDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 170 -------~~~~i~vwd~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~ 230 (430)
.++.+++|++++..... . .........+++++++..++++ +.|++|++||+++++++..+.
T Consensus 95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~ 174 (365)
T 4h5i_A 95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE 174 (365)
T ss_dssp HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE
T ss_pred cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC
Confidence 46789999987654211 0 1112234567888888886544 478999999999999998886
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEE-EecCCCCCeEEEEEecCCCEEEEEeCCC----eEEEEeC
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT-LRSTDCTGIKTLCYNPCSRLVFAGTTAG----YASCWDL 304 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~i~d~ 304 (430)
|.+.|.+++|+|+ .++++++. +.+.+|+..+++.+.. ....|...|.+++|+|+++++++++.|+ .+++|++
T Consensus 175 -~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 175 -TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp -CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEE
T ss_pred -CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeeccc
Confidence 7789999999987 77877775 5566677677766543 3333677899999999999999998887 6888998
Q ss_pred CCCce----eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecc
Q 014104 305 RTMKS----LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGR 380 (430)
Q Consensus 305 ~~~~~----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~ 380 (430)
..... ...+.+|...|++++ |+|+|++|++|+.|++|+|||+++++++.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~V~~~~-~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~----------------------- 308 (365)
T 4h5i_A 253 KSGNTSVLRSKQVTNRFKGITSMD-VDMKGELAVLASNDNSIALVKLKDLSMSKIFK----------------------- 308 (365)
T ss_dssp ETTEEEEEEEEEEESSCSCEEEEE-ECTTSCEEEEEETTSCEEEEETTTTEEEEEET-----------------------
T ss_pred ccceecceeeeeecCCCCCeEeEE-ECCCCCceEEEcCCCEEEEEECCCCcEEEEec-----------------------
Confidence 76543 345778889999999 99999999999999999999999999887763
Q ss_pred cccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 381 RLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 381 ~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+|...|++|+| ||++|||||.|++||||++..+
T Consensus 309 ------------~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 309 ------------QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ------------TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred ------------CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 356779999999 6899999999999999999654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=298.09 Aligned_cols=316 Identities=9% Similarity=0.049 Sum_probs=231.5
Q ss_pred eccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc-
Q 014104 109 KAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV- 185 (430)
Q Consensus 109 ~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~- 185 (430)
..|..+|.+++|+.+ +|++++.|++|++||+.+++.+..+..+..+..++|+|++++++ ++.||.|++||+++++..
T Consensus 55 ~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~ 134 (902)
T 2oaj_A 55 LEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS 134 (902)
T ss_dssp CSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence 458889999999546 89999999999999999999999998777888999999999999 889999999999987632
Q ss_pred c---------cCCCCceeeeeEEEEcC---CceEEEecCCeEEEEECCCCeeeEEeecC------------------CCC
Q 014104 186 F---------PSREGTFMKGLCMRYFD---PEAVVGCEDGTARVFDMYSRKCSQIIRMH------------------CAP 235 (430)
Q Consensus 186 ~---------~~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~ 235 (430)
+ ....++...+.++.+.. ..+++|+.||.| +||+++++++..+..| ...
T Consensus 135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~ 213 (902)
T 2oaj_A 135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213 (902)
T ss_dssp EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC
Confidence 0 11223333334444433 349999999999 9999999988888765 478
Q ss_pred eEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEE--Ee---cC------------CCCCeEEEEEec----CC-CEEEE
Q 014104 236 VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVAT--LR---ST------------DCTGIKTLCYNP----CS-RLVFA 292 (430)
Q Consensus 236 i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~--~~---~~------------~~~~v~~~~~~~----~~-~~l~~ 292 (430)
|++++|+|+ .+|++|+.||+|++||+++++.+.. +. .+ +...|.+++|++ ++ .+|++
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence 999999986 8999999999999999999887654 21 11 234688888854 32 34555
Q ss_pred EeCC----------------------------------------------------------------------------
Q 014104 293 GTTA---------------------------------------------------------------------------- 296 (430)
Q Consensus 293 ~~~d---------------------------------------------------------------------------- 296 (430)
|+.+
T Consensus 294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence 5333
Q ss_pred CeEEEEeCCCCceeee-----------------------------------------eecCCCceEEEEEeeCCCCeEEE
Q 014104 297 GYASCWDLRTMKSLWE-----------------------------------------TRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~-----------------------------------------~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
|.|++||+.++..... +.+|...+.+++ |+|++++|++
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~-~spdg~~laS 452 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL-PAEYGTAFIT 452 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC-CCSEEEEEEE
T ss_pred CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc-ccccCcEEEE
Confidence 3445555443322111 122223333444 6789999999
Q ss_pred EcCCCeEEEEEcCCCce---------------------EEEEEeccCcceeeeccCCceEEEeecccccC----------
Q 014104 336 GGIDGVLRVLDQNTGEV---------------------LSRCVMDIGSASSSSNKVSGVIERNEGRRLSA---------- 384 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~~---------------------~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~---------- 384 (430)
|+.|++|++||+.++.. +..+...+++..+++++.||++++|+......
T Consensus 453 gs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~ 532 (902)
T 2oaj_A 453 GHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESG 532 (902)
T ss_dssp EETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----------
T ss_pred ecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCc
Confidence 99999999999987632 34444555566788888899998887643210
Q ss_pred C-------------------------------cccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 385 G-------------------------------CCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 385 ~-------------------------------~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
. ........+|.+.|++++| || +||+|+.|++|+|||+++++
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~ 607 (902)
T 2oaj_A 533 DLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPA 607 (902)
T ss_dssp -----CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTE
T ss_pred ccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCe
Confidence 0 0011233569999999999 58 99999999999999987653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-35 Score=273.16 Aligned_cols=272 Identities=13% Similarity=0.176 Sum_probs=225.9
Q ss_pred ceeEEEecC-CeEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC
Q 014104 114 GVDQCRMKR-GLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 114 ~v~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~ 188 (430)
.++.|+|+. +.|++|. |++|+|||..+++.+..+..+ ..+.+++|+|++++|+ ++.|+.|++||+++++.+..
T Consensus 107 y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~- 184 (420)
T 4gga_A 107 YLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN- 184 (420)
T ss_dssp TCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE-
T ss_pred cceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE-
Confidence 356788854 4777664 999999999999988877643 3578899999999999 89999999999999875432
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR 266 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~ 266 (430)
..++...+.++.+++..+++|+.|+.+++||.... ..+..+.+|...+..+.++|+ .++++++.|+.+++||..+++.
T Consensus 185 ~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~ 264 (420)
T 4gga_A 185 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG 264 (420)
T ss_dssp ECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSS
T ss_pred EeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccc
Confidence 23344456778888888999999999999998764 456788999999999999975 8999999999999999987653
Q ss_pred ----eEEEecCCCCCeEEEEEecCCC-EEEE--EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc--
Q 014104 267 ----VATLRSTDCTGIKTLCYNPCSR-LVFA--GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG-- 337 (430)
Q Consensus 267 ----~~~~~~~~~~~v~~~~~~~~~~-~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-- 337 (430)
+..... |...|.+++|+|++. .+++ |+.|++|++||+.+++++..+..| ..+.++. ++|+++.+++++
T Consensus 265 ~~~~~~~~~~-~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~-~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 265 GWVPLQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSIL-WSPHYKELISGHGF 341 (420)
T ss_dssp CSCCSEEECC-CSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEE-EETTTTEEEEEECT
T ss_pred cceeeeeecc-cCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeee-ecCCCCeEEEEEec
Confidence 344544 788999999999765 5554 457999999999999999888766 5678888 889999888765
Q ss_pred CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCC
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNS 415 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~D 415 (430)
.|+.|+|||+.+++++.++.+ |...|++++| ||++|+|||.|
T Consensus 342 ~d~~I~iwd~~~~~~v~~l~g------------------------------------H~~~V~~l~~spdg~~l~S~s~D 385 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAELKG------------------------------------HTSRVLSLTMSPDGATVASAAAD 385 (420)
T ss_dssp TTCCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECTTSSCEEEEETT
T ss_pred CCCEEEEEECCCCcEEEEEcC------------------------------------CCCCEEEEEEcCCCCEEEEEecC
Confidence 789999999999999998865 5558999998 58899999999
Q ss_pred CeEEEEEecCC
Q 014104 416 KYIRLWKFNYS 426 (430)
Q Consensus 416 g~v~vw~~~~~ 426 (430)
++|+|||+...
T Consensus 386 ~tvriWdv~~~ 396 (420)
T 4gga_A 386 ETLRLWRCFEL 396 (420)
T ss_dssp TEEEEECCSCS
T ss_pred CeEEEEECCCC
Confidence 99999998754
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=308.80 Aligned_cols=320 Identities=17% Similarity=0.191 Sum_probs=246.3
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecC--CCEEE-EEeCCeEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFD--ESKIV-GLIGTRICIW 177 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~-~~~~~~i~vw 177 (430)
.+.++.+|.+.|.+++| +++ +|++|+.||+|++||+.+++.+..+..+ ..+..++|+++ +..++ ++.|+.|++|
T Consensus 649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw 728 (1249)
T 3sfz_A 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728 (1249)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence 56788999999999999 555 9999999999999999999999999876 55777999995 44666 8889999999
Q ss_pred EcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe--------------------------
Q 014104 178 RRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-------------------------- 229 (430)
Q Consensus 178 d~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------------------------- 229 (430)
|+.+++.. +..+.+. +..+++.+.+..+++++.||.|++||+.+++....+
T Consensus 729 d~~~~~~~~~~~~h~~~-v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 807 (1249)
T 3sfz_A 729 DLNQKECRNTMFGHTNS-VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS 807 (1249)
T ss_dssp ETTSSSEEEEECCCSSC-EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBC
T ss_pred ECCCcchhheecCCCCC-EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEEC
Confidence 99988743 3334333 345666777777999999999999998776543332
Q ss_pred -----------------------------ecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeE
Q 014104 230 -----------------------------RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 230 -----------------------------~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
.+|...|.+++|+|+ .++++++.||.|++||+.++..+..+.+ |...|.
T Consensus 808 ~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~ 886 (1249)
T 3sfz_A 808 ADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVH 886 (1249)
T ss_dssp TTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC-CSSCEE
T ss_pred CCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC-CccceE
Confidence 157788999999976 8999999999999999999999998887 888999
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCC------------------------------------------------------
Q 014104 280 TLCYNPCSRLVFAGTTAGYASCWDLR------------------------------------------------------ 305 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg~i~i~d~~------------------------------------------------------ 305 (430)
+++|+|+|++|++++.||.|++||+.
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 99999999999999999888888853
Q ss_pred -------------------------CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc
Q 014104 306 -------------------------TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 306 -------------------------~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
+++.+..+.+|...|.+++ |+|++++|++++.||.|++||+.+++... +..|.
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~-~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~ 1044 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQ-FTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQ 1044 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEE-ECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCS
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEE-ECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCC
Confidence 2233344567888999998 99999999999999999999987765432 11121
Q ss_pred Ccc---------eeeeccCCceEEEeecc---------------------------------------cccCCcccccCC
Q 014104 361 GSA---------SSSSNKVSGVIERNEGR---------------------------------------RLSAGCCIDRIP 392 (430)
Q Consensus 361 ~~~---------~~~~~s~d~~v~~~~~~---------------------------------------~~~~~~~~~~~~ 392 (430)
..+ .+++++.|+.+.+|+.. .+.....+ ...
T Consensus 1045 ~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~-~~l 1123 (1249)
T 3sfz_A 1045 ETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL-HEL 1123 (1249)
T ss_dssp SCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCS-BCC
T ss_pred CcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCccee-eee
Confidence 111 23334444444433321 11111112 223
Q ss_pred CCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 393 KTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 393 ~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+|...|++++| ++++|++|+.||.|++||+.+++.
T Consensus 1124 ~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A 1124 KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 578899999999 688999999999999999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=271.18 Aligned_cols=234 Identities=18% Similarity=0.208 Sum_probs=199.3
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
.|.+++| +++ +|++|+.|++|++||+.+++.+..+.+| ..+..++|+|+++.|+ ++.|+.|++||+.+++......
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 204 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS 204 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence 4899999 566 9999999999999999999999988876 4577899999999999 8899999999999887543322
Q ss_pred CCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEe-------ecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 190 EGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQII-------RMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 190 ~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
.......+++.+ .+..+++|+.||.|++||+++++.+..+ .+|...|.+++|+|+ .++++|+.|+.|++||
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 223334455555 4556999999999999999999887766 578999999999976 8999999999999999
Q ss_pred CCCC------------ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 261 LSSD------------QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 261 ~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
+++. .+...+.+ |...|.+++|+|++.+|++|+.|+.|++||+++++++..+.+|.+.|.+++ +++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~-~~~ 362 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIG-HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA-VAN 362 (393)
T ss_dssp C---------------CEEEEEEC-CSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-ECS
T ss_pred CCCCCCcccccCCCCCcceEEEec-ccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEE-ecC
Confidence 9763 34455665 788999999999999999999999999999999999999999999999998 665
Q ss_pred ------CCCeEEEEcCCCeEEEEEcCC
Q 014104 329 ------DTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 329 ------~~~~l~s~~~dg~i~vwd~~~ 349 (430)
++.+|++|+.||+|++|++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 688999999999999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=271.34 Aligned_cols=242 Identities=13% Similarity=0.112 Sum_probs=192.8
Q ss_pred EEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEee----ec-CCceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 107 QWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEY----SL-PNAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~-~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
...+|.+.|.+++| +++.+++++.||+|++||+.+++..... .. ...+..++|+|++++|+ ++.|+.|++||+
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred ccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 34578899999999 5668888999999999999887654322 23 35678899999999999 889999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC--CEEEEEeC
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED--QLIISGSS 252 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~--~~l~~~~~ 252 (430)
++++.+ +..+... +..+++.+.++ .+++++.||.|++||+++++++..+. .|...+.+++|+|+ .++++|+.
T Consensus 169 ~~~~~~~~~~~h~~~-v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~ 247 (357)
T 4g56_B 169 SQKAVLKSYNAHSSE-VNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE 247 (357)
T ss_dssp TTTEEEEEECCCSSC-EEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES
T ss_pred CCCcEEEEEcCCCCC-EEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec
Confidence 988754 3333333 23344444554 48999999999999999988776554 46678999999975 68999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC-CC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN-DT 330 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~-~~ 330 (430)
|+.|++||+++++.+..+.+ |...|++++|+|++ ++|++|+.|++|++||+++++.+.. .+|.+.|++++ |+| ++
T Consensus 248 d~~i~~wd~~~~~~~~~~~~-~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~-~~H~~~V~~va-fsP~d~ 324 (357)
T 4g56_B 248 TGNVSLVNIKNPDSAQTSAV-HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD-LSHRDFVTGVA-WSPLDH 324 (357)
T ss_dssp SSCEEEEESSCGGGCEEECC-CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE-CCCSSCEEEEE-ECSSST
T ss_pred ccceeEEECCCCcEeEEEec-cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE-CCCCCCEEEEE-EeCCCC
Confidence 99999999999999999987 88899999999987 5789999999999999999887765 47999999999 998 78
Q ss_pred CeEEEEcCCCeEEEEEcCCCce
Q 014104 331 STLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.+|++++.||+|++||+.+...
T Consensus 325 ~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 325 SKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp TEEEEEETTSCEEEEECC----
T ss_pred CEEEEEcCCCeEEEEECCCCCc
Confidence 9999999999999999976433
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=287.60 Aligned_cols=306 Identities=14% Similarity=0.139 Sum_probs=246.8
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC----eeEEeeecC-Cc-eeEEEEec--CCCEEE-EEeCCeEEEEE
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY----KCVEEYSLP-NA-ASLVDFDF--DESKIV-GLIGTRICIWR 178 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-~~-~~~~~~~~--~~~~l~-~~~~~~i~vwd 178 (430)
.|.+.|.+++| +++ +|++++ ++.|++||+.++ +....+.+| .. +..++|+| ++++|+ ++.|+.|++||
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~ 94 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWG 94 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEe
Confidence 68899999999 566 888887 889999999998 888888876 45 78899999 999999 88899999999
Q ss_pred cCCC--------cc--cccCCCCceeeeeEEEEcCCceEEEecC----CeEEEEECCCCeeeEEeecCCCCeEEEEecCC
Q 014104 179 RNGL--------RS--VFPSREGTFMKGLCMRYFDPEAVVGCED----GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244 (430)
Q Consensus 179 ~~~~--------~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~ 244 (430)
+.++ .. .+..+.. ....+++.+++..+++++.+ +.|.+|| +++.+..+.+|...|.+++|+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~ 171 (615)
T 1pgu_A 95 WTFDKESNSVEVNVKSEFQVLAG-PISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQS 171 (615)
T ss_dssp EEEEGGGTEEEEEEEEEEECCSS-CEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSS
T ss_pred CCCCcccccccccccchhhcccc-cEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCC
Confidence 9754 21 2222333 34456666777779999887 7899998 67788899999999999999986
Q ss_pred -C-EEEEEeCCCeEEEEeCCCCceeEEEecCCCC---CeEEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeeee-e---
Q 014104 245 -Q-LIISGSSLGSIAISGLSSDQRVATLRSTDCT---GIKTLCYNPC-SRLVFAGTTAGYASCWDLRTMKSLWET-R--- 314 (430)
Q Consensus 245 -~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~-~--- 314 (430)
. .+++++.|+.|++||+.+++.+..+.. |.. .|.+++|+|+ +++|++++.||.|++||+++++.+..+ .
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred CCcEEEEEeCCCcEEEEeCCCcceeeeecc-cCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccc
Confidence 3 899999999999999999999999987 777 8999999999 999999999999999999999999888 6
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc-------------CcceeeeccCCceEEEeeccc
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI-------------GSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-------------~~~~~~~~s~d~~v~~~~~~~ 381 (430)
.|...|.++. |+ ++.+|++++.||.|++||+.+++.+..+..+. ....+++++.|+.+.+|+...
T Consensus 251 ~~~~~v~~~~-~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~ 328 (615)
T 1pgu_A 251 PVQGGIFALS-WL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGH 328 (615)
T ss_dssp CCCSCEEEEE-ES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred ccCCceEEEE-Ec-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence 8999999999 88 99999999999999999999999998888763 223677788888888776543
Q ss_pred ccCCcccccCC--------------------------------CCCCCCeeEEEEc-CeEEEEeeCCCeEEEEEecC
Q 014104 382 LSAGCCIDRIP--------------------------------KTIRPPITCLAVG-MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 382 ~~~~~~~~~~~--------------------------------~~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.. .+..+. ..|...|+++++. ++.+++++.|+.|++|++..
T Consensus 329 ~~---~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~ 402 (615)
T 1pgu_A 329 DE---VLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK 402 (615)
T ss_dssp EE---EEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEE
T ss_pred Cc---EEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEccc
Confidence 11 111110 3455556666663 55666666666666666654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=262.74 Aligned_cols=243 Identities=19% Similarity=0.206 Sum_probs=197.2
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
.+...+.+|.+.|.+++| +++ ++++|+.|++|++||+.+++.+..+.+| ..+..++|+|+++.|+ ++.|+.|++||
T Consensus 67 ~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 67 IPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146 (343)
T ss_dssp EEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred cccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence 456789999999999999 455 9999999999999999999999999876 5677899999999999 88899999999
Q ss_pred cCCCccc-ccCCCCce--eeeeEEEEcC----------CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-
Q 014104 179 RNGLRSV-FPSREGTF--MKGLCMRYFD----------PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED- 244 (430)
Q Consensus 179 ~~~~~~~-~~~~~~~~--~~~~~~~~~~----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~- 244 (430)
+...... ......+. ...+.+.+.+ +.+++++.||.|++||. +.+....+.+|...|.+++|+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g 225 (343)
T 2xzm_R 147 ILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNG 225 (343)
T ss_dssp SSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTS
T ss_pred ccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCC
Confidence 9854322 11111222 2334444443 56999999999999994 66777888999999999999986
Q ss_pred CEEEEEeCCCeEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee--eee-------
Q 014104 245 QLIISGSSLGSIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW--ETR------- 314 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~------- 314 (430)
++|++|+.|+.|++||+. .......+. +...|.+++|+|++++++++ .|+.|++||+.+++... .+.
T Consensus 226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp SEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred CEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 899999999999999994 444455554 45579999999999988765 56779999998766543 333
Q ss_pred ----cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 315 ----ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 315 ----~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
+|...|.+++ |+|+|++|++|+.||.|++||++++
T Consensus 303 ~~~~~~~~~v~~~~-~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 303 EGQKGKNPQCTSLA-WNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TTBCCSCCCEEEEE-ECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhcCCCCceEEEE-ECCCCCeEEEecCCceEEEEEEEcc
Confidence 6778899999 9999999999999999999998754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=266.90 Aligned_cols=243 Identities=12% Similarity=0.134 Sum_probs=189.6
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+.+|.+.|++++| +++ +|++|+.|++|++||+.+++ .+..+.+| ..+..++|+++.
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~------------------ 69 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM------------------ 69 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGG------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCC------------------
Confidence 56799999999999 555 99999999999999998764 35566655 334445554310
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC---CEEEEEeCCCeE
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED---QLIISGSSLGSI 256 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~---~~l~~~~~dg~i 256 (430)
.+..|++|+.|++|++||+++++ .+..+.+|...|.+++|+|+ .++++|+.|++|
T Consensus 70 --------------------~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i 129 (316)
T 3bg1_A 70 --------------------YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129 (316)
T ss_dssp --------------------GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred --------------------CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence 12338899999999999998773 56678889999999999974 589999999999
Q ss_pred EEEeCCCCce---eEEEecCCCCCeEEEEEecC-----------------CCEEEEEeCCCeEEEEeCCCC---ceeeee
Q 014104 257 AISGLSSDQR---VATLRSTDCTGIKTLCYNPC-----------------SRLVFAGTTAGYASCWDLRTM---KSLWET 313 (430)
Q Consensus 257 ~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~dg~i~i~d~~~~---~~~~~~ 313 (430)
++||++++.. ...+.+ |...|.+++|+|+ +++|++|+.|+.|++||++.. +++..+
T Consensus 130 ~lwd~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l 208 (316)
T 3bg1_A 130 SLLTYTGEGQWEVKKINNA-HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKL 208 (316)
T ss_dssp EEEEECSSSCEEECCBTTS-SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECC
T ss_pred EEEecCCCCCcceeeeecc-ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeec
Confidence 9999987632 223333 7788999999997 478999999999999999754 467788
Q ss_pred ecCCCceEEEEEeeCCC----CeEEEEcCCCeEEEEEcCCCc----eEEEEEeccCcceeeeccCCceEEEeecccccCC
Q 014104 314 RISPNVVYSLQHLQNDT----STLVVGGIDGVLRVLDQNTGE----VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAG 385 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~----~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~ 385 (430)
.+|.+.|.+++ |+|++ .+|++++.||+|++||+.+.. ....+.
T Consensus 209 ~~h~~~V~~v~-~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~---------------------------- 259 (316)
T 3bg1_A 209 EAHSDWVRDVA-WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLH---------------------------- 259 (316)
T ss_dssp BCCSSCEEEEE-CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEE----------------------------
T ss_pred ccCCCceEEEE-ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhh----------------------------
Confidence 99999999999 99986 789999999999999987631 111122
Q ss_pred cccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 386 CCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 386 ~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.|...|++++| ++++|++|+.||+|++|+...
T Consensus 260 --------~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 260 --------KFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp --------ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred --------cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 24568999999 588999999999999999863
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=261.70 Aligned_cols=249 Identities=15% Similarity=0.186 Sum_probs=210.5
Q ss_pred eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 143 KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
+...++.+| ..+.+++|+|+++.|+ ++.|+.|++||..+++.. +..+. ..+..+++.+.+..+++|+.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~-~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPC-TWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS-SCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCC-CCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 445567766 5678899999999999 899999999998876632 22222 234456777777789999999999999
Q ss_pred ECCCC------eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec--CCCE
Q 014104 219 DMYSR------KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP--CSRL 289 (430)
Q Consensus 219 d~~~~------~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 289 (430)
++... .....+.+|...|.+++|+|+ ..+++++.|++|++||+++++.+..+.+ |...|.+++|+| ++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG-HGADVLCLDLAPSETGNT 212 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECCCSSCCE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-CCCCeEEEEEEeCCCCCE
Confidence 98643 345677889999999999976 7999999999999999999999999987 888999999987 4689
Q ss_pred EEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeecc
Q 014104 290 VFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNK 369 (430)
Q Consensus 290 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s 369 (430)
|++|+.||.|++||+++++++..+.+|...|.+++ |+|++.+|++|+.|++|++||+++++.+..+..+
T Consensus 213 l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~---------- 281 (354)
T 2pbi_B 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR-YYPSGDAFASGSDDATCRLYDLRADREVAIYSKE---------- 281 (354)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT----------
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEE-EeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC----------
Confidence 99999999999999999999999999999999999 9999999999999999999999988766555321
Q ss_pred CCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 370 VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 370 ~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+...+++++| ++++|++|+.|+.|++||+.+++.
T Consensus 282 ------------------------~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~ 318 (354)
T 2pbi_B 282 ------------------------SIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR 318 (354)
T ss_dssp ------------------------TCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred ------------------------CcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce
Confidence 12346788888 589999999999999999987753
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=255.81 Aligned_cols=272 Identities=14% Similarity=0.168 Sum_probs=222.2
Q ss_pred eeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCC
Q 014104 115 VDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 115 v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
.++|+|+ +++|++| .|++|+|||+.++++++.+..+ ..+..++|++++++++ ++.|+.|++||+++++.+.. .
T Consensus 28 ~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~-~ 105 (318)
T 4ggc_A 28 LNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN-M 105 (318)
T ss_dssp CBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-E
T ss_pred ceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE-e
Confidence 5788995 4566665 5999999999999999888743 3477899999999999 88999999999999875432 2
Q ss_pred CCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCce-
Q 014104 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQR- 266 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~- 266 (430)
.++.....++...+..+++++.++.+++|+..+. ..+..+.+|...+..+.+.++ .++++++.|+.|++||+++++.
T Consensus 106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~ 185 (318)
T 4ggc_A 106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG 185 (318)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB
T ss_pred cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc
Confidence 2333445777888888999999999999998776 456778899999999999965 8999999999999999987653
Q ss_pred ---eEEEecCCCCCeEEEEEecCCCEE---EEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc--C
Q 014104 267 ---VATLRSTDCTGIKTLCYNPCSRLV---FAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG--I 338 (430)
Q Consensus 267 ---~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~--~ 338 (430)
...... +...|.++.++|++..+ ++++.++.|++||.+........ .+...+..+. ++|++..+++++ .
T Consensus 186 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~-~~~~~~~~~~~sg~~ 262 (318)
T 4ggc_A 186 WVPLQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSIL-WSPHYKELISGHGFA 262 (318)
T ss_dssp SCCSEEECC-CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEE-EETTTTEEEEEECTT
T ss_pred ccceeeecc-cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeee-ecccccceEEEEEcC
Confidence 233333 67789999999977633 36678899999999988776554 4557788888 889998887654 7
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
|+.|++||+.+++++.++.+ |.+.|++++| ++++|+|||.||
T Consensus 263 d~~i~iwd~~~~~~~~~l~g------------------------------------H~~~V~~l~~spdg~~l~S~s~D~ 306 (318)
T 4ggc_A 263 QNQLVIWKYPTMAKVAELKG------------------------------------HTSRVLSLTMSPDGATVASAAADE 306 (318)
T ss_dssp TCCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECTTSSCEEEEETTT
T ss_pred CCEEEEEECCCCcEEEEEcC------------------------------------CCCCEEEEEEcCCCCEEEEEecCC
Confidence 99999999999999998865 5558999999 588999999999
Q ss_pred eEEEEEecCCC
Q 014104 417 YIRLWKFNYSD 427 (430)
Q Consensus 417 ~v~vw~~~~~~ 427 (430)
+|+|||+...+
T Consensus 307 ~v~iWd~~~~d 317 (318)
T 4ggc_A 307 TLRLWRCFELD 317 (318)
T ss_dssp EEEEECCSCCC
T ss_pred eEEEEECCCCC
Confidence 99999997654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=259.42 Aligned_cols=278 Identities=15% Similarity=0.165 Sum_probs=229.0
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC-eeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccccc
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY-KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
|.++|.++++ ++| +++++..++.+..|+.... +.+..+.+...+..++|+++++.++++.++.|++||+.++.....
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~ 87 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP 87 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSC
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceee
Confidence 5678999999 566 7777777777777765543 444455555778889999999999955599999999987652211
Q ss_pred C------CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEE
Q 014104 188 S------REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258 (430)
Q Consensus 188 ~------~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~v 258 (430)
. ........+++.+.+..+++++.||.|++||+.+++ ....+..|...|.+++|+|+ +++++++.||.|++
T Consensus 88 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~ 167 (337)
T 1gxr_A 88 VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167 (337)
T ss_dssp SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEE
Confidence 1 222334455666666779999999999999999887 66778889999999999976 79999999999999
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
||+++++.+..+.. |...|.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++ ++|+++++++++.
T Consensus 168 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~-~s~~~~~l~~~~~ 244 (337)
T 1gxr_A 168 WDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLG-YCPTGEWLAVGME 244 (337)
T ss_dssp EETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE-ECTTSSEEEEEET
T ss_pred EeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEE-ECCCCCEEEEEcC
Confidence 99999999999887 88899999999999999999999999999999998887765 668899998 9999999999999
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
|+.|++||+.+++.. .+. .|...|++++| ++++|++++.||
T Consensus 245 ~~~i~~~~~~~~~~~-~~~------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 245 SSNVEVLHVNKPDKY-QLH------------------------------------LHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp TSCEEEEETTSSCEE-EEC------------------------------------CCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCcEEEEECCCCCeE-EEc------------------------------------CCccceeEEEECCCCCEEEEecCCC
Confidence 999999999977643 222 35568999999 588999999999
Q ss_pred eEEEEEecCCCc
Q 014104 417 YIRLWKFNYSDK 428 (430)
Q Consensus 417 ~v~vw~~~~~~~ 428 (430)
.|++|++.+++.
T Consensus 288 ~i~~~~~~~~~~ 299 (337)
T 1gxr_A 288 LLNAWRTPYGAS 299 (337)
T ss_dssp EEEEEETTTCCE
T ss_pred cEEEEECCCCeE
Confidence 999999988764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-34 Score=269.34 Aligned_cols=277 Identities=19% Similarity=0.310 Sum_probs=235.3
Q ss_pred CCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEE
Q 014104 141 GYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD 219 (430)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd 219 (430)
..+....+.+|......+++++++.++ ++.||.|++||+.+++..... .++...+.++.+.+..+++|+.||+|++||
T Consensus 107 ~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 107 ELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTGGVWSSQMRDNIIISGSTDRTLKVWN 185 (445)
T ss_dssp CCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEC-CCCSSCEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEE-cCCCCCEEEEEecCCEEEEEeCCCeEEEEE
Confidence 334556677776655557888899998 889999999999988754222 233344567777778899999999999999
Q ss_pred CCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 220 MYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
+.+++.+..+.+|...|.++.++ ++.+++|+.||.|++||+.+++.+..+.+ |...|.++++ +++++++|+.||.|
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~--~~~~l~~~~~dg~i 261 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMG-HVAAVRCVQY--DGRRVVSGAYDFMV 261 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEEC-CSSCEEEEEE--CSSCEEEEETTSCE
T ss_pred CCcCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcC-CcccEEEEEE--CCCEEEEEcCCCEE
Confidence 99999999999999999999996 45799999999999999999999999987 8889999999 78899999999999
Q ss_pred EEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc--------eeeeccCC
Q 014104 300 SCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA--------SSSSNKVS 371 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~~~~~s~d 371 (430)
++||+++++.+..+.+|...|.++. + ++.++++++.||.|++||+.+++++..+..|...+ .+++++.|
T Consensus 262 ~iwd~~~~~~~~~~~~~~~~v~~~~-~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 338 (445)
T 2ovr_B 262 KVWDPETETCLHTLQGHTNRVYSLQ-F--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 338 (445)
T ss_dssp EEEEGGGTEEEEEECCCSSCEEEEE-E--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETT
T ss_pred EEEECCCCcEeEEecCCCCceEEEE-E--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCC
Confidence 9999999999999999999999998 6 78999999999999999999999999888776543 67888999
Q ss_pred ceEEEeecccccCCcccccCC--CCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCCc
Q 014104 372 GVIERNEGRRLSAGCCIDRIP--KTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 372 ~~v~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|.+.+|+... +..+..+. ..|...|+++++++++|++|+.||.|++||+.+++.
T Consensus 339 g~i~vwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 339 STVKIWDIKT---GQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 394 (445)
T ss_dssp SCEEEEETTT---CCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred CeEEEEECCC---CcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCce
Confidence 9998887643 33333332 358899999999999999999999999999998764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=272.74 Aligned_cols=269 Identities=14% Similarity=0.110 Sum_probs=221.4
Q ss_pred eEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC
Q 014104 155 SLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 155 ~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (430)
..++|+|++++++ ++.|+.+++||+.+++...............+.+.+..+++|+.||.|++||+.+++....+.+|.
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~ 139 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHV 139 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccccc
Confidence 4589999999998 888999999999987755444444444444555667779999999999999999999988888999
Q ss_pred CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee
Q 014104 234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
+.|.+++|+|+ +++++|+.|+.|++||+++++.+..+.+ |...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus 140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 218 (420)
T 3vl1_A 140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT 218 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence 99999999976 7999999999999999999999999987 888999999999999999999999999999999998888
Q ss_pred eecC---CCceEEEEE--------------------eeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe-ccC-------
Q 014104 313 TRIS---PNVVYSLQH--------------------LQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM-DIG------- 361 (430)
Q Consensus 313 ~~~~---~~~v~~l~~--------------------~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~------- 361 (430)
+..| ...+.++.+ |+|++++|++|+.||.|++||+.+++.+..+.. |..
T Consensus 219 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~ 298 (420)
T 3vl1_A 219 FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTV 298 (420)
T ss_dssp ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEE
T ss_pred eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEE
Confidence 7753 344444431 678999999999999999999998887666643 222
Q ss_pred ---cc-eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecCC
Q 014104 362 ---SA-SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 362 ---~~-~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.. .+++++.||.+.+|+..... ..+..+..+|...|+++.+ ++++|++++.||.|++|++..+
T Consensus 299 ~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 299 DGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred eCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 22 67777788888877665432 1234455567889999988 6889999999999999999874
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=272.59 Aligned_cols=263 Identities=16% Similarity=0.223 Sum_probs=218.9
Q ss_pred EEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEE
Q 014104 134 MRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVG 209 (430)
Q Consensus 134 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~ 209 (430)
+..|+.....+..++.+| ..+..++|+|++++|+ ++.|++|++||+.+++.. +..+... +..+++.+++..+++|
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW-VMECAFAPNGQSVACG 126 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT-CCCCEECTTSSEEEEC
T ss_pred ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC-EEEEEECCCCCEEEEe
Confidence 445666777778888887 5678899999999999 889999999999887643 3344333 3456777788889999
Q ss_pred ecCCeEEEEECCCCe-------eeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEe----cCCCC
Q 014104 210 CEDGTARVFDMYSRK-------CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR----STDCT 276 (430)
Q Consensus 210 ~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~ 276 (430)
+.|+.+++||+.+.. ....+.+|.+.|.++.|.|+ ..+++|+.|++|++||+++++.+..+. ..|..
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~ 206 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA 206 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc
Confidence 999999999986532 34567899999999999974 579999999999999999999988773 23778
Q ss_pred CeEEEEEec-CCCEEEEEeCCCeEEEEeCC-CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEE
Q 014104 277 GIKTLCYNP-CSRLVFAGTTAGYASCWDLR-TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 277 ~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 354 (430)
.|.+++|+| ++++|++|+.|++|++||++ .++.+..+.+|.+.|.+++ |+|++++|++|+.||+|++||+++++.+.
T Consensus 207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~-~~p~~~~l~s~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK-FFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE-ECTTSSEEEEECSSSCEEEEETTTTEEEE
T ss_pred CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE-EecCCCeEEEEcCCCeEEEEECCCCcEEE
Confidence 999999987 78999999999999999998 4577888999999999999 99999999999999999999999999888
Q ss_pred EEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.+..+... ...+...|++++| +|++|++|+.||.|++||+..++
T Consensus 286 ~~~~~~~~-----------------------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 286 VYNREPDR-----------------------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp EECCCCSS-----------------------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred Eecccccc-----------------------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence 87654330 0123356889998 68999999999999999987665
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=269.18 Aligned_cols=305 Identities=10% Similarity=0.128 Sum_probs=222.7
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe-----------eEEeeecC-------------CceeEEEEecCC
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK-----------CVEEYSLP-------------NAASLVDFDFDE 163 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~-----------~~~~~~~~-------------~~~~~~~~~~~~ 163 (430)
.|.+.|++++| +++ +|++|+.||.|+|||+.+++ ....+.+| ..+..++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 36899999999 555 99999999999999999876 46777776 457789999998
Q ss_pred --CEEE-EEeCCeEEEEEcCCCccc------------------------------------------ccCCCCceeeeeE
Q 014104 164 --SKIV-GLIGTRICIWRRNGLRSV------------------------------------------FPSREGTFMKGLC 198 (430)
Q Consensus 164 --~~l~-~~~~~~i~vwd~~~~~~~------------------------------------------~~~~~~~~~~~~~ 198 (430)
..++ ++.|+.|++||+.++... ...+.. .+..++
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~ 184 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY-HINSIS 184 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS-CCCEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc-ceEEEE
Confidence 6677 899999999998764321 112222 233455
Q ss_pred EEEcCCceEEEecCCeEEEEECCC-CeeeE-------EeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCce--
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYS-RKCSQ-------IIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQR-- 266 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~-------~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~-- 266 (430)
+.+.+..+++| .||.|++||+++ ++.+. .+.+|...|.+++|+|+ .++++|+.||.|++||+++++.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 55666668888 899999999984 44444 25689999999999975 6999999999999999999887
Q ss_pred --eEEEecCCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCc------------
Q 014104 267 --VATLRSTDCT------------GIKTLCYNPCSRLVFAGTTAGYASCWDLRT-MKSLWETRISPNV------------ 319 (430)
Q Consensus 267 --~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~------------ 319 (430)
+..+.. +.. .|.+++|+|+|++|++++. +.|++||+++ ++++..+.+|...
T Consensus 264 ~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 341 (447)
T 3dw8_B 264 RHSKLFEE-PEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDC 341 (447)
T ss_dssp TTCEEECC-C-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSG
T ss_pred ceeeEecc-CCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccc
Confidence 677776 544 8999999999999999999 9999999997 8888888888532
Q ss_pred ---eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCC
Q 014104 320 ---VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIR 396 (430)
Q Consensus 320 ---v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~ 396 (430)
+..++ |+|++++|++|+.||.|++||+.+++.+ .+..+..............+.... ... ..........+.
T Consensus 342 i~~~~~~~-~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~ 416 (447)
T 3dw8_B 342 IFDKFECC-WNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASG-KRK--KDEISVDSLDFN 416 (447)
T ss_dssp GGCCCCEE-ECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSS-CCC--TTCEEGGGCCTT
T ss_pred cccceEEE-ECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccC-Ccc--cccccccccccC
Confidence 23377 9999999999999999999999998876 455444322111111111110000 000 000111112345
Q ss_pred CCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 397 PPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 397 ~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
..|.+++| ++++|++|+.++ +.+|.-+
T Consensus 417 ~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 417 KKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp SCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred CceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 68999999 588999998876 7777643
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=253.81 Aligned_cols=249 Identities=17% Similarity=0.235 Sum_probs=208.7
Q ss_pred eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 143 KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
....++.+| ..+..++|+|++++|+ ++.|+.|++|+..+++.. +..+... +..+++.+++..+++++.||.|++|
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCc-eEEEEEcCCCCEEEEECCCCEEEEE
Confidence 445566665 5678899999999999 888999999999877643 3333333 3446666677779999999999999
Q ss_pred ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC
Q 014104 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG 297 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 297 (430)
|+++++++..+.+|...|.+++|+|+ +++++|+.|+.|++||+++++.+..+.. |..+|.+++|+|++++|++++.||
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~ 171 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDG 171 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTS
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-CCCcEEEEEEcCCCCEEEEEeCCC
Confidence 99999999999999999999999976 8999999999999999999999999887 788999999999999999999999
Q ss_pred eEEEEeCCCCceeeeee-cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEE
Q 014104 298 YASCWDLRTMKSLWETR-ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 298 ~i~i~d~~~~~~~~~~~-~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
.|++||+++++.+..+. .+...+..++ |+|++++|++++.||.|++||+.+++++..+..|....
T Consensus 172 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------- 237 (312)
T 4ery_A 172 LCRIWDTASGQCLKTLIDDDNPPVSFVK-FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK------------- 237 (312)
T ss_dssp CEEEEETTTCCEEEEECCSSCCCEEEEE-ECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSS-------------
T ss_pred cEEEEECCCCceeeEEeccCCCceEEEE-ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCce-------------
Confidence 99999999988877654 4556788888 99999999999999999999999999888887654411
Q ss_pred eecccccCCcccccCCCCCCCCeeE-EEE-cCeEEEEeeCCCeEEEEEecCCC
Q 014104 377 NEGRRLSAGCCIDRIPKTIRPPITC-LAV-GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~h~~~v~~-v~~-~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..+.. ... ++.+|++|+.||.|++||+.+++
T Consensus 238 --------------------~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 238 --------------------YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp --------------------SCCCEEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred --------------------EEEEEEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 11111 222 57889999999999999998775
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=260.32 Aligned_cols=262 Identities=13% Similarity=0.124 Sum_probs=205.3
Q ss_pred CeeEEeeecCC--ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc----c-cCCCCceeeeeEEEEcCCceEEEecCC
Q 014104 142 YKCVEEYSLPN--AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV----F-PSREGTFMKGLCMRYFDPEAVVGCEDG 213 (430)
Q Consensus 142 ~~~~~~~~~~~--~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~----~-~~~~~~~~~~~~~~~~~~~l~~~~~dg 213 (430)
.+++.++.+|. .+..++|+|++++|+ ++.|+.|++||++++... . ..|.. .+..+++.+++..|++|+.|+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQR-TVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSS-CEEEEEECTTSSEEEEEETTS
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCC-cEEEEEECCCCCEEEEEECCC
Confidence 35667777663 567899999999999 888999999999887522 1 22333 234566666777799999999
Q ss_pred eEEEEECCCC--eeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc---eeEEEecCCCCCeEEEEEecCC
Q 014104 214 TARVFDMYSR--KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ---RVATLRSTDCTGIKTLCYNPCS 287 (430)
Q Consensus 214 ~i~vwd~~~~--~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~ 287 (430)
+|++||+.++ +++..+.+|...|.+++|+|+ ++|++|+.|++|++||++++. .+..+.. |...|.+++|+|++
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-HTQDVKHVVWHPSQ 162 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC-CCSCEEEEEECSSS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC-cCCCeEEEEECCCC
Confidence 9999998776 467888999999999999986 899999999999999998764 3455655 88899999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCc--eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCccee
Q 014104 288 RLVFAGTTAGYASCWDLRTMK--SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASS 365 (430)
Q Consensus 288 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 365 (430)
++|++|+.|+.|++||.++++ +...+.+|...|.+++ |+|++++|++++.|++|++||....... .. +
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~-~sp~g~~l~s~s~D~~v~iW~~~~~~~~-------~~--~ 232 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA-FDPSGQRLASCSDDRTVRIWRQYLPGNE-------QG--V 232 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE-ECTTSSEEEEEETTSCEEEEEEECTTCT-------TC--C
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEE-ECCCCCEEEEEeCCCeEEEeccccCCCC-------cc--c
Confidence 999999999999999998775 4567889999999999 9999999999999999999996432110 00 0
Q ss_pred eeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 366 SSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 366 ~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.....+... .++..+...|...|++++| ++..|++++.|+.|++|+...+
T Consensus 233 ~~~~~~~~~-----------~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 233 ACSGSDPSW-----------KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp CCC---CEE-----------EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred eeeccCCcc-----------ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 000000000 1122233458889999999 5889999999999999998764
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=263.73 Aligned_cols=252 Identities=14% Similarity=0.171 Sum_probs=203.1
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecC--CCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWR 178 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd 178 (430)
.+..+.+|.+.|++++| +++ +|++|+.||.|++||+. +++.+..+..| ..+..++|+++.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------------- 67 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK--------------- 67 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG---------------
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC---------------
Confidence 45678999999999999 555 99999999999999998 55666666655 344556665431
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC---CEEEEEeCC
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED---QLIISGSSL 253 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~---~~l~~~~~d 253 (430)
.+..+++++.||.|++||+.+++ .+..+..|...|.+++|+|+ .++++++.|
T Consensus 68 -----------------------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d 124 (379)
T 3jrp_A 68 -----------------------FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124 (379)
T ss_dssp -----------------------GCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred -----------------------CCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence 02337889999999999998886 77788889999999999974 699999999
Q ss_pred CeEEEEeCCCCce--eEEEecCCCCCeEEEEEec-------------CCCEEEEEeCCCeEEEEeCCCCc----eeeeee
Q 014104 254 GSIAISGLSSDQR--VATLRSTDCTGIKTLCYNP-------------CSRLVFAGTTAGYASCWDLRTMK----SLWETR 314 (430)
Q Consensus 254 g~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~ 314 (430)
+.|++||++++.. ...+.. |...|.+++|+| ++.+|++++.||.|++||+++++ ....+.
T Consensus 125 ~~i~v~d~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 203 (379)
T 3jrp_A 125 GKVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE 203 (379)
T ss_dssp SEEEEEECCTTSCCCEEEEEC-CTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEEC
T ss_pred CcEEEEecCCCCceeeEEecC-CCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEe
Confidence 9999999998743 344444 788999999999 69999999999999999998764 445778
Q ss_pred cCCCceEEEEEeeCC---CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccC
Q 014104 315 ISPNVVYSLQHLQND---TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRI 391 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~ 391 (430)
+|...|.+++ |+|+ +.+|++++.||.|++||+.++..........
T Consensus 204 ~h~~~v~~~~-~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------- 251 (379)
T 3jrp_A 204 GHSDWVRDVA-WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK------------------------------- 251 (379)
T ss_dssp CCSSCEEEEE-ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS-------------------------------
T ss_pred cccCcEeEEE-ECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeec-------------------------------
Confidence 8999999999 9999 8999999999999999998765322111100
Q ss_pred CCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 392 PKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 392 ~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
...|...|++++| ++++|++++.||.|++|++..+
T Consensus 252 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 252 EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 1346678999999 6889999999999999999843
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-34 Score=258.70 Aligned_cols=280 Identities=10% Similarity=0.055 Sum_probs=201.7
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC----eeEEeeecC-CceeEEEEec--CCCEEEEEeCCeEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY----KCVEEYSLP-NAASLVDFDF--DESKIVGLIGTRICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~~~i~vw 177 (430)
.+.+|.+.|++++| +++ +|++|+.||.|++||+.++ +....+..+ ..+..++|++ +++.
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~------------ 73 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRI------------ 73 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSE------------
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCE------------
Confidence 57899999999999 555 9999999999999999876 355555554 4455566666 3444
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC---------eeeEEeecCCCCeEEEEecC---CC
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR---------KCSQIIRMHCAPVTSLSLSE---DQ 245 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---------~~~~~~~~~~~~i~~~~~~~---~~ 245 (430)
+++++.||.|++||++++ +.+..+..|.+.|.+++|+| +.
T Consensus 74 ----------------------------l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 125 (351)
T 3f3f_A 74 ----------------------------IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL 125 (351)
T ss_dssp ----------------------------EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS
T ss_pred ----------------------------EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc
Confidence 566666777777776655 55777888999999999997 56
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEEe------------cCCCCCeEEEEEecC---CCEEEEEeCCCeEEEEeCCCCce-
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATLR------------STDCTGIKTLCYNPC---SRLVFAGTTAGYASCWDLRTMKS- 309 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~- 309 (430)
++++++.||.|++||+++++.+..+. ..+...+.+++|+|+ +..+++++.++.+.+|+...++.
T Consensus 126 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 205 (351)
T 3f3f_A 126 KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH 205 (351)
T ss_dssp EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE
T ss_pred EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee
Confidence 89999999999999999887654432 136678999999997 89999999999998888877765
Q ss_pred -eeeeecCCCceEEEEEeeCCC----CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceee----------eccCCceE
Q 014104 310 -LWETRISPNVVYSLQHLQNDT----STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSS----------SNKVSGVI 374 (430)
Q Consensus 310 -~~~~~~~~~~v~~l~~~s~~~----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----------~~s~d~~v 374 (430)
+..+.+|...|.+++ |+|++ ++|++++.||.|++||+.++................ .+..++..
T Consensus 206 ~~~~~~~h~~~i~~~~-~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
T 3f3f_A 206 VAAKLPGHKSLIRSIS-WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNT 284 (351)
T ss_dssp EEEECCCCCSCEEEEE-ECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------
T ss_pred eeeecCCCCcceeEEE-ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccccccc
Confidence 677888999999999 99998 899999999999999998765544333222221111 11111111
Q ss_pred -EEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 375 -ERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 375 -~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.....+...... ......+|...|++++| ++++|++|+.||.|++|++.++++
T Consensus 285 ~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 285 EEKAELQSNLQVE-LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp ------CCSEEEE-EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ceeeeeccccccc-EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 011111111111 12223578999999999 588999999999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=255.22 Aligned_cols=252 Identities=13% Similarity=0.151 Sum_probs=194.6
Q ss_pred CCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc--cc--c-cC-CCCceeeeeEEEEcCCceEEEecC
Q 014104 141 GYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--SV--F-PS-REGTFMKGLCMRYFDPEAVVGCED 212 (430)
Q Consensus 141 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~--~~--~-~~-~~~~~~~~~~~~~~~~~l~~~~~d 212 (430)
+.+++..+.+| ..+..++|+++ .|+ ++.|+.|++||+.++. .. + .. |.. .+..+++.+.+..+++|+.|
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~-~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKK-AIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCS-CEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccC-CEEEEEECCCCCEEEEEeCC
Confidence 44667777776 45667888876 777 8889999999998753 11 2 11 222 34456666677779999999
Q ss_pred CeEEEEECCC-------CeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCC----ceeEEEecCCCCCeEE
Q 014104 213 GTARVFDMYS-------RKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSD----QRVATLRSTDCTGIKT 280 (430)
Q Consensus 213 g~i~vwd~~~-------~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~v~~ 280 (430)
++|++||+.. .+++..+.+|...|.+++|+|+ ++|++|+.|++|++||++.. +++..+.+ |...|.+
T Consensus 80 ~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h~~~v~~ 158 (330)
T 2hes_X 80 STVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-HSQDVKH 158 (330)
T ss_dssp SCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-CSSCEEE
T ss_pred CcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-CCCceEE
Confidence 9999999853 3567788899999999999986 89999999999999999532 45667776 8889999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEeCCCC--ceeeeeecCCCceEEEEEeeCC--CCeEEEEcCCCeEEEEEcCCCceE--E
Q 014104 281 LCYNPCSRLVFAGTTAGYASCWDLRTM--KSLWETRISPNVVYSLQHLQND--TSTLVVGGIDGVLRVLDQNTGEVL--S 354 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~s~~--~~~l~s~~~dg~i~vwd~~~~~~~--~ 354 (430)
++|+|++++|++|+.|++|++||..++ +++..+.+|.+.|.+++ |+|+ +.+|++|+.|++|++||+.++... .
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~-~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~ 237 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD-FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQ 237 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEE-ECCSSSSCEEEEEETTSCEEEEEEEEECTTSCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEE-ecCCCCeeEEEEEeCCCeEEEEEecCCCccccc
Confidence 999999999999999999999998766 67788999999999999 9998 678999999999999998643210 0
Q ss_pred EEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc-CeEEEEeeCCCeEEEEEecCC
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG-MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+ .....+...|...|++++|+ +.+|++++.||+|++|+..++
T Consensus 238 ~~-----------------------------~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 238 EW-----------------------------VCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EE-----------------------------EEEEECCSCCSSCEEEEEECTTSCEEEEETTSCEEEEEEETT
T ss_pred ee-----------------------------EEeeecccccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCC
Confidence 00 00112223478899999994 668999999999999998765
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=256.42 Aligned_cols=300 Identities=15% Similarity=0.070 Sum_probs=212.4
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~ 179 (430)
++.++.+|.+.|.+++| +++ +|++|+.| .+++||+.+++.......+ .+..+++.++++.++ ++.++.|++||.
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred CccccccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 44567899999999999 566 78877766 4789999988777665543 577789999988875 566789999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC-eeeEEeecCCCCeEEEEecCCCEEEE--EeCCCeE
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR-KCSQIIRMHCAPVTSLSLSEDQLIIS--GSSLGSI 256 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~--~~~dg~i 256 (430)
.+++.+....... .+.++......++++ .++.|++||+.++ +.+..+.. +...+++++ ..++. |+.||.|
T Consensus 89 ~~~~~~~~~~~~~--~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~~~g~v 161 (355)
T 3vu4_A 89 VKKQDVSRIKVDA--PVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEFNLGQI 161 (355)
T ss_dssp TTTEEEEEEECSS--CEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESSCTTCE
T ss_pred CCCcEEEEEECCC--ceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCCcCcEE
Confidence 9887543322222 345555555555554 5789999999988 77766664 444556666 45555 6899999
Q ss_pred EEEeCCCCc----------------eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe-EEEEeCCCCceeeeee-c-CC
Q 014104 257 AISGLSSDQ----------------RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY-ASCWDLRTMKSLWETR-I-SP 317 (430)
Q Consensus 257 ~vwd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~-~-~~ 317 (430)
++||+.+++ .+..+.+ |...|.+++|+|+|++|++|+.|++ |++||+++++++..+. + |.
T Consensus 162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~ 240 (355)
T 3vu4_A 162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKA-HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDR 240 (355)
T ss_dssp EEEECCC------------------CCEEECC-CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCC
T ss_pred EEEECCCCCccccccccccccccCcccEEEEc-cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCC
Confidence 999999865 2667776 8899999999999999999999998 9999999999999998 5 89
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCC
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRP 397 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~ 397 (430)
..|.+++ |+|++++|++++.|++|++||+..+........... . .....+ ..+ ......++..+..
T Consensus 241 ~~v~~~~-~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~--~-~~~~~~------~~~----~~~~~~~~~~~~~ 306 (355)
T 3vu4_A 241 ADVVDMK-WSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW--I-NMKYFQ------SEW----SLCNFKLSVDKHV 306 (355)
T ss_dssp SCEEEEE-ECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT--E-ECCCCC------CSS----CSEEEECCCCTTC
T ss_pred CcEEEEE-ECCCCCEEEEEECCCEEEEEEccCCCCcccccccce--e-eccccc------ccc----ceeEEEeccCCCC
Confidence 9999999 999999999999999999999986532211110000 0 000000 000 0001112222333
Q ss_pred CeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 398 PITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 398 ~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
....++| ++++|++++.||.+++|++..++
T Consensus 307 ~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 307 RGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred CceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 4566777 68999999999999999987654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=258.92 Aligned_cols=284 Identities=12% Similarity=0.133 Sum_probs=226.6
Q ss_pred CEeEEEEeccccceeEEEe-cC---C-eEEEEeCCCeEEEEecCC-CeeE-EeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KR---G-LILTGVGDKVMRLWSLEG-YKCV-EEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~---~-~l~s~~~dg~i~iwd~~~-~~~~-~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
...+..+.+|.+.|++++| ++ + +|++|+.||.|++||+.+ ++.+ ..+..| ..+..++|+|++++|+ ++.|+
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg 108 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCC
Confidence 3467788999999999999 44 4 999999999999999987 5554 566654 5678899999999998 88899
Q ss_pred eEEEEEcCCCcccccCCCCceeeeeEE--EEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEE
Q 014104 173 RICIWRRNGLRSVFPSREGTFMKGLCM--RYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISG 250 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 250 (430)
.|++||+++++.............+++ .+.+..+++++.||.|++||+++++.+..+..+. .+.++.+.++ .++++
T Consensus 109 ~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~ 186 (368)
T 3mmy_A 109 TAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAVVA 186 (368)
T ss_dssp EEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEEEE
T ss_pred cEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeEEE
Confidence 999999998875433322333344555 3344459999999999999999999998888654 6777777644 77888
Q ss_pred eCCCeEEEEeCCCCceeEE-EecCCCCCeEEEEEecCCCE----EEEEeCCCeEEEEeCCCC---ceeeeeecCCC----
Q 014104 251 SSLGSIAISGLSSDQRVAT-LRSTDCTGIKTLCYNPCSRL----VFAGTTAGYASCWDLRTM---KSLWETRISPN---- 318 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~---- 318 (430)
+.++.+.+||++....... +...+...+.++.+.++... +++++.||.|++||++.. +.+..+.+|..
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 266 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTN 266 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---
T ss_pred eCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccc
Confidence 8899999999987654433 33334457778888776654 999999999999999987 56677777765
Q ss_pred --------ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccccc
Q 014104 319 --------VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDR 390 (430)
Q Consensus 319 --------~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~ 390 (430)
.|.+++ |+|++++|++++.||.|++||+.+++++..+..
T Consensus 267 ~~~~~~~~~v~~~~-~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------------------- 313 (368)
T 3mmy_A 267 TSAPQDIYAVNGIA-FHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ-------------------------------- 313 (368)
T ss_dssp -CCCEEECCEEEEE-ECTTTCCEEEEETTSCEEEEETTTTEEEEECCC--------------------------------
T ss_pred ccccccccceEEEE-EecCCCEEEEEccCCeEEEEECCCCcEEEEecC--------------------------------
Confidence 699999 999999999999999999999999988887754
Q ss_pred CCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 391 IPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 391 ~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
|...|++++| ++++|++|+.|+..+.|++.
T Consensus 314 ----~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 314 ----LDQPISACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp ----CSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred ----CCCCceEEEECCCCCeEEEEeccccccccccc
Confidence 4458999999 58899999999877666654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=272.37 Aligned_cols=279 Identities=13% Similarity=0.119 Sum_probs=221.6
Q ss_pred EEecCCCeeEEee-ecC-CceeEEEEec-CCCEEE-EEeCCeEEEEEcCC---Cc---cccc-CCCCceeeeeEEEEcCC
Q 014104 136 LWSLEGYKCVEEY-SLP-NAASLVDFDF-DESKIV-GLIGTRICIWRRNG---LR---SVFP-SREGTFMKGLCMRYFDP 204 (430)
Q Consensus 136 iwd~~~~~~~~~~-~~~-~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~---~~---~~~~-~~~~~~~~~~~~~~~~~ 204 (430)
.|+ .+++.+..+ .+| ..+..++|+| ++++|+ ++.|+.|++||+.+ +. .... .+.. .+..+++.+.+.
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSS-TVTQITMIPNFD 124 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSS-CEEEEEECTTSS
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCC-CEEEEEEeCCCC
Confidence 488 456888888 665 6788899999 999999 88999999999876 32 1122 2222 234455555666
Q ss_pred ceEEEecCCeEEEEECC---CCeeeEEeec------------CCCCeEEEEec--CC-CEEEEEeCCCeEEEEeCCCCce
Q 014104 205 EAVVGCEDGTARVFDMY---SRKCSQIIRM------------HCAPVTSLSLS--ED-QLIISGSSLGSIAISGLSSDQR 266 (430)
Q Consensus 205 ~l~~~~~dg~i~vwd~~---~~~~~~~~~~------------~~~~i~~~~~~--~~-~~l~~~~~dg~i~vwd~~~~~~ 266 (430)
.+++++.||.|++||++ +++.+..+.. +...+.++.+. ++ .++++|+.|+.|++||+++++.
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 79999999999999994 5555444332 44556666633 44 7999999999999999999999
Q ss_pred eEEEecC-CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee-cCCCceEEEEE---eeCCCCeEEEEcCCCe
Q 014104 267 VATLRST-DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR-ISPNVVYSLQH---LQNDTSTLVVGGIDGV 341 (430)
Q Consensus 267 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~v~~l~~---~s~~~~~l~s~~~dg~ 341 (430)
+..+... |...|++++|+|++++|++|+.||.|++||+++++++..+. .|...|.++++ ++|++.+|++|+.||.
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 9999864 67799999999999999999999999999999999988876 77789999951 4567889999999999
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCC--CCCCCeeEEEE-cCeEEEEeeCCCeE
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPK--TIRPPITCLAV-GMKKVVTTHNSKYI 418 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~-~~~~l~t~~~Dg~v 418 (430)
|++||+.+++++..+..|...+....+++++... ...... .|...|++++| ++++|++|+.||.|
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i 352 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL------------EELNFCGIRSLNALSTISVSNDKILLTDEATSSI 352 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG------------GGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEE
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceeccccccc------------ccceecccccCCceEEEEECCceEEEecCCCCeE
Confidence 9999999999999999998877777777766431 000112 37889999999 57899999999999
Q ss_pred EEEEecCCCc
Q 014104 419 RLWKFNYSDK 428 (430)
Q Consensus 419 ~vw~~~~~~~ 428 (430)
++||+.+++.
T Consensus 353 ~~wd~~~~~~ 362 (437)
T 3gre_A 353 VMFSLNELSS 362 (437)
T ss_dssp EEEETTCGGG
T ss_pred EEEECCCccc
Confidence 9999988764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=262.55 Aligned_cols=261 Identities=19% Similarity=0.257 Sum_probs=219.5
Q ss_pred EeEEEEeccccceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEec--CCCEEE-EEeCCeEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDF--DESKIV-GLIGTRICIW 177 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~-~~~~~~i~vw 177 (430)
..+..+.+|.+.|.+++|. ++++++|+.||+|++||+.+++.+..+.++ ..+..+++++ ++..++ ++.|+.|++|
T Consensus 153 ~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw 232 (464)
T 3v7d_B 153 KFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232 (464)
T ss_dssp EEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred cEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence 4677889999999999995 459999999999999999999999999865 5677788885 667777 8899999999
Q ss_pred EcCCCccc----------------------ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCC
Q 014104 178 RRNGLRSV----------------------FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235 (430)
Q Consensus 178 d~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (430)
|+.+.... .....++...+.++.+.+..+++|+.||.|++||+.+++++..+.+|...
T Consensus 233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 312 (464)
T 3v7d_B 233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312 (464)
T ss_dssp ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC
Confidence 99876532 11233444556777888888999999999999999999999999999999
Q ss_pred eEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 236 VTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 236 i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
|.+++|+|+ +.+++|+.||.|++||+++++.+..+.+ |...|.+++|+ +++|++++.||.|++||+++++......
T Consensus 313 v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 389 (464)
T 3v7d_B 313 IYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH 389 (464)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeC-CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence 999999976 8999999999999999999999999987 88899999996 5899999999999999999887665553
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEE-EEeccCcceeeecc
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR-CVMDIGSASSSSNK 369 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~s 369 (430)
+...+..++ ++|+++++++|+ ||.|++||+.+++.+.. +..+...+..++++
T Consensus 390 -~~~~~~~~~-~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 390 -HTNLSAITT-FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp -CTTCCCEEE-EEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred -CCCCccEEE-EEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 455666776 899999999998 89999999999998875 33444444444443
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=258.17 Aligned_cols=259 Identities=15% Similarity=0.178 Sum_probs=221.9
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccc
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF 186 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~ 186 (430)
|.+.|.+++| +++ +|++|+.||.|++|| .+++.+..+..+ ..+..++|+|+++.|+ ++.++.|++||+.+++...
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 7889999999 455 999999999999999 667778888765 5677899999999988 8889999999998876432
Q ss_pred cC--CCCc--------------eeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEE
Q 014104 187 PS--REGT--------------FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 187 ~~--~~~~--------------~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~ 249 (430)
.. +... ....+++.+. ..+++++.+|.|++||+.+++.+..+..|...|.+++|+|+ .++++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EECCC---------------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 22 1111 0334555543 45999999999999999999999999999999999999976 79999
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
++.|+.|++||+++++.+..+.. |...|.+++|+|++ .+++++.|+.|++||+++++.+..+..|...|.+++ |+|+
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~-~s~~ 341 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYG-HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGR-ISQD 341 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECC-CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEE-ECTT
T ss_pred EcCCCEEEEEECCCCccceEecC-CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEE-EcCC
Confidence 99999999999999999988876 78899999999999 999999999999999999999999999999999999 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCc--------------------eEEEEEeccC--cceeeeccCCceE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGE--------------------VLSRCVMDIG--SASSSSNKVSGVI 374 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~--------------------~~~~~~~~~~--~~~~~~~s~d~~v 374 (430)
+++|++++.||.|++||+.+++ ++..+..|.. .+..+.+++|+..
T Consensus 342 ~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 342 GQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp SSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred CCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence 9999999999999999999888 8888888865 6766666666653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=248.02 Aligned_cols=244 Identities=23% Similarity=0.283 Sum_probs=203.2
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
+.+.+.+|.+.|.+++| +++ +|++|+.|+.|++|+............+ .......+++++..++ ++.|+.+++||.
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 56788999999999999 556 9999999999999999998887777665 4556688899999888 888999999999
Q ss_pred CCCcccccCCCCce--eeeeEEEEcCC--ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 180 NGLRSVFPSREGTF--MKGLCMRYFDP--EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
...........++. ....++.+.+. .+++++.|+.|++||+++++.+..+.+|.++|++++|+|+ ++|++|+.|+
T Consensus 158 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg 237 (340)
T 4aow_A 158 LGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237 (340)
T ss_dssp TSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 87664333333322 23344444433 3789999999999999999999999999999999999986 8999999999
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee---------ecCCCceEEEEE
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET---------RISPNVVYSLQH 325 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------~~~~~~v~~l~~ 325 (430)
.|++||+++.+.+..+. +...|.++.|+|++.++ +++.|+.|++||++++..+..+ .+|...|++++
T Consensus 238 ~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~- 313 (340)
T 4aow_A 238 QAMLWDLNEGKHLYTLD--GGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA- 313 (340)
T ss_dssp EEEEEETTTTEEEEEEE--CSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE-
T ss_pred eEEEEEeccCceeeeec--CCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE-
Confidence 99999999999999888 45689999999988655 5567999999999987766544 36788999999
Q ss_pred eeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 326 LQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
|+|++++|++|+.||.|+|||+++|+
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999999999999999885
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-32 Score=249.34 Aligned_cols=249 Identities=15% Similarity=0.184 Sum_probs=218.3
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC-----Ce
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG-----TR 173 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-----~~ 173 (430)
...+..+.+|.+.|.+++| +++ +|++++.||.|++||+.+++.+..+.....+..++|++++..++ ++.+ +.
T Consensus 64 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 64 GERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred chhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence 3467789999999999999 455 99999999999999999999999999878889999999999999 6666 89
Q ss_pred EEEEEcCCCccc-------------ccCCCC-ceeeeeEEEEcCCceEEEecCCeEEEEECCC-CeeeEEeecCCCCeEE
Q 014104 174 ICIWRRNGLRSV-------------FPSREG-TFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAPVTS 238 (430)
Q Consensus 174 i~vwd~~~~~~~-------------~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~ 238 (430)
|.+||+...... ...+.+ .....+++.+.+..+++++.||.|++||+++ ++.+..+..|...|.+
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~ 223 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD 223 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE
Confidence 999999865421 111111 1344566666777799999999999999998 7888999999999999
Q ss_pred EEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--------------eEEEEe
Q 014104 239 LSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG--------------YASCWD 303 (430)
Q Consensus 239 ~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~i~d 303 (430)
++|+|+ .++++++.|+.|++||+++++.+..+. +...+.+++|+|+++++++++.++ .+++||
T Consensus 224 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d 301 (369)
T 3zwl_B 224 MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYH 301 (369)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEE
T ss_pred EEECCCCCEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEe
Confidence 999976 799999999999999999999999888 677899999999999999999988 899999
Q ss_pred CCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 304 LRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 304 ~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
..+++.+..+.+|...|.+++ |+|++++|++++.||.|++|+++++...
T Consensus 302 ~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 302 KIFEEEIGRVQGHFGPLNTVA-ISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp TTTCCEEEEEECCSSCEEEEE-ECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred cCCCcchhheecccCcEEEEE-ECCCCCEEEEEcCCCeEEEEECccccch
Confidence 999999999999999999999 9999999999999999999999865443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=255.12 Aligned_cols=248 Identities=15% Similarity=0.184 Sum_probs=203.9
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
.+.+|.+.|++|+| ++| +|++|+.||+|++||+.+++.+..+.+|. ..+.++++++..++ ++.|+.+.+||.....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~-~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~ 220 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS-ARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 220 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEEETTEEEEEETTSEEEEEETTSSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCC-CceEEEeeCCCEEEEEeCCCceeEeeecccc
Confidence 44578889999999 566 99999999999999999999999988763 34566777888888 8899999999998765
Q ss_pred ccc---cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe----eeEEeecCCCCeEEEEecCC--CEEEE--EeC
Q 014104 184 SVF---PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK----CSQIIRMHCAPVTSLSLSED--QLIIS--GSS 252 (430)
Q Consensus 184 ~~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~--~~l~~--~~~ 252 (430)
... ..+... .....+.+.+..+++++.|+.+++||..+++ .+.....|.+.|.+++|+|. .++++ |+.
T Consensus 221 ~~~~~~~~h~~~-~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 221 HHVATLSGHSQE-VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp CEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred eeeEEecccccc-eeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 432 333332 3344555566679999999999999998765 35667789999999999974 56655 458
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT--TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
|++|++||+.+++....+. ....+.++.|+|+++.+++++ .|+.|++||+.+++++.++.+|.+.|++++ |+|+|
T Consensus 300 D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~-~spdg 376 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDG 376 (420)
T ss_dssp TCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTS
T ss_pred CCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCC
Confidence 9999999999999999888 455899999999999988765 789999999999999999999999999999 99999
Q ss_pred CeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 331 STLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
++|+||+.|++|+|||+.+..+.+....+
T Consensus 377 ~~l~S~s~D~tvriWdv~~~~~~~~~~~~ 405 (420)
T 4gga_A 377 ATVASAAADETLRLWRCFELDPARRRERE 405 (420)
T ss_dssp SCEEEEETTTEEEEECCSCSSCC------
T ss_pred CEEEEEecCCeEEEEECCCCCccchhhhc
Confidence 99999999999999999877665555443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=271.16 Aligned_cols=240 Identities=25% Similarity=0.343 Sum_probs=200.5
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
...+.+|.+.|.+++| +++ +|+||+.||+|++||+.+++.+..+.+| ..+..++|+|+++.|+ ++.|+.|++||..
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 4578899999999999 455 9999999999999999999999998876 5577899999999999 8899999999987
Q ss_pred CCccc--ccCCCCceeeeeEEE--EcC--CceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 181 GLRSV--FPSREGTFMKGLCMR--YFD--PEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 181 ~~~~~--~~~~~~~~~~~~~~~--~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
+.... .....++...+.++. +.+ +.+++++.|++|++||++++++...+.+|.+.|++++|+|+ +++++|+.|
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 65432 222233333334444 333 34999999999999999999999999999999999999986 899999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC----------------
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP---------------- 317 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------- 317 (430)
|.|++||+++++.+..+. +...|.+++|+|++.+|++++ ++.|++||+++++.+..+..+.
T Consensus 583 g~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659 (694)
T ss_dssp SBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC---------------
T ss_pred CeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCC
Confidence 999999999999888776 456899999999999888775 4569999999988777654321
Q ss_pred ---CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 318 ---NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 318 ---~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
..+.+++ |+|+|++|++|+.||.|++||+.
T Consensus 660 ~~~~~~~~l~-~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 660 RKVIYCTSLN-WSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp -CCCCEEEEE-ECTTSSEEEEEETTSEEEEEEC-
T ss_pred ceeEEeeeEE-EcCCCCEEEEEcCCCeEEEEecc
Confidence 1367888 99999999999999999999985
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=255.27 Aligned_cols=246 Identities=13% Similarity=0.180 Sum_probs=209.5
Q ss_pred eEEEEeccccceeEEEe-cC--------CeEEEEeCCCeEEEEecCCCee-----EEeeecC------CceeEEEEe---
Q 014104 104 DIDQWKAHSVGVDQCRM-KR--------GLILTGVGDKVMRLWSLEGYKC-----VEEYSLP------NAASLVDFD--- 160 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~--------~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~------~~~~~~~~~--- 160 (430)
.+..+.+|...|.+++| ++ .+|++++.||.|++||+.+++. +..+..+ ..+..++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 47788899999999999 44 5899999999999999998876 7777766 677889999
Q ss_pred -cCCCE-EE-EEeCCeEEEEEcCC------Ccccc-----cC--------CCCceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 161 -FDESK-IV-GLIGTRICIWRRNG------LRSVF-----PS--------REGTFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 161 -~~~~~-l~-~~~~~~i~vwd~~~------~~~~~-----~~--------~~~~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
+++.. |+ ++.++.|++||+.+ ++.+. .. ........+++.+.+ .+++++.||.|++|
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 99998 88 78899999999988 44332 11 122334455666667 89999999999999
Q ss_pred ECCCCeeeEEeec---C---CCCeEEEEecCC-CEEEEEeCC---CeEEEEeCCCCceeEEEecC------------CCC
Q 014104 219 DMYSRKCSQIIRM---H---CAPVTSLSLSED-QLIISGSSL---GSIAISGLSSDQRVATLRST------------DCT 276 (430)
Q Consensus 219 d~~~~~~~~~~~~---~---~~~i~~~~~~~~-~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~------------~~~ 276 (430)
|+++++.+..+.. | ...|.+++|+|+ .++++++.| +.|++||+++++.+..+... |..
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence 9999999999998 8 999999999976 899999999 99999999999999888752 677
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee------cC---------------CCceEEEEEeeCCC-----
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR------IS---------------PNVVYSLQHLQNDT----- 330 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~---------------~~~v~~l~~~s~~~----- 330 (430)
.|.+++|+|++++|++++.||.|++||+++++.+..+. .| ...|.+++ |+|++
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~-~~~~g~~~~~ 371 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVK-FLKKGWRSGM 371 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEE-EECTTTSBST
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEE-eccccccccc
Confidence 99999999999999999999999999999999999998 77 89999999 99998
Q ss_pred -----CeEEEEcCCCeEEEEEcCCCc
Q 014104 331 -----STLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 331 -----~~l~s~~~dg~i~vwd~~~~~ 351 (430)
++|++++.||.|++||+.+|+
T Consensus 372 ~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 372 GADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cccccceEEEecCCCcEEEEEcCCCC
Confidence 799999999999999998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-32 Score=274.52 Aligned_cols=248 Identities=15% Similarity=0.239 Sum_probs=210.6
Q ss_pred CCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
....+..+.+|.++|.+++| +++ +|++|+.||.|++||+.+++.+..+..+ ..+..++|+|++..|+ ++.|+.|++
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 123 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred CCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEE
Confidence 34577889999999999999 555 9999999999999999999999998866 5678899999999998 888999999
Q ss_pred EEcCCCccc---ccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEeecCC-CCeEEEEecC--C-CEEE
Q 014104 177 WRRNGLRSV---FPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSE--D-QLII 248 (430)
Q Consensus 177 wd~~~~~~~---~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~~~--~-~~l~ 248 (430)
||++++... +..+... ...+++.+ .+..+++++.||.|++||+.+++....+..+. ..+.+++|+| + .+++
T Consensus 124 w~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 124 WNWENNWALEQTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEGGGTSEEEEEEECCSSC-EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EECCCCceEEEEEcCCCCc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 999876432 2333332 34455555 45569999999999999999888877777655 8899999997 5 7999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
+++.||.|++||+.+++.+..+.+ |...|.+++|+|+++++++++.||.|++||+.+++.+..+..|...+.+++ ++|
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~-~~~ 280 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVATLEG-HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA-THP 280 (814)
T ss_dssp EECTTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEE-ECT
T ss_pred EEeCCCEEEEEECCCCcEEEEEcC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEE-Ecc
Confidence 999999999999999999999987 788999999999999999999999999999999999999999999999999 999
Q ss_pred CCCe-EEEEcCCCeEEEEEcCCCc
Q 014104 329 DTST-LVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 329 ~~~~-l~s~~~dg~i~vwd~~~~~ 351 (430)
++.. +++++.++.+.+|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 281 TGRKNYIASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp TCGGGEEEEEETTEEEEEECSCCS
T ss_pred CCCceEEEEEeCCCEEEEEcCCCC
Confidence 9873 2444557779999876543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=259.62 Aligned_cols=241 Identities=12% Similarity=0.176 Sum_probs=203.9
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC----CeeEEeeecC-CceeEEEEecC-CCEEE-EEeCCeEEEEEcC
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG----YKCVEEYSLP-NAASLVDFDFD-ESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~-~~~~~~~~~~~-~~~l~-~~~~~~i~vwd~~ 180 (430)
+|...|.+++| +++ +|++|+.||.|++||+.+ .+.+..+..| ..+..++|+|+ ++.|+ ++.|+.|++||+.
T Consensus 65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 58889999999 455 999999999999999987 3467777665 56788999998 78888 7889999999999
Q ss_pred CCc------ccccC--CCCce--eeeeEEEEc-CCceEEEecCCeEEEEECCCCeeeEEeecC------CCCeEEEEecC
Q 014104 181 GLR------SVFPS--REGTF--MKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMH------CAPVTSLSLSE 243 (430)
Q Consensus 181 ~~~------~~~~~--~~~~~--~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~~~ 243 (430)
+++ ..... ...+. ...+++.+. +..+++++.||.|++||+++++.+..+..+ ...|.+++|+|
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 224 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP 224 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECS
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECC
Confidence 876 22221 12222 334455555 445999999999999999999999888876 78999999998
Q ss_pred C--CEEEEEeCCC---eEEEEeCCCC-ceeEEEe-cCCCCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q 014104 244 D--QLIISGSSLG---SIAISGLSSD-QRVATLR-STDCTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 244 ~--~~l~~~~~dg---~i~vwd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 315 (430)
+ .++++++.|+ .|++||++++ ..+..+. + |...|.+++|+| ++++|++++.|+.|++||+++++++..+..
T Consensus 225 ~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 225 KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQG-HQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSC-CSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecC-ccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 6 5899999998 9999999986 5666666 4 888999999999 999999999999999999999999999999
Q ss_pred CCCceEEEEEeeCCC-CeEEEEcCCCeEEEEEcCCCce
Q 014104 316 SPNVVYSLQHLQNDT-STLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~-~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
|...|.+++ |+|++ .+|++++.||.|++||+.++..
T Consensus 304 ~~~~v~~~~-~s~~~~~~l~s~~~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 304 RGNWCFKTK-FAPEAPDLFACASFDNKIEVQTLQNLTN 340 (416)
T ss_dssp SSSCCCCEE-ECTTCTTEEEECCSSSEEEEEESCCCCC
T ss_pred CCCceEEEE-ECCCCCCEEEEEecCCcEEEEEccCCCC
Confidence 999999999 99999 8999999999999999987653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=254.82 Aligned_cols=245 Identities=17% Similarity=0.227 Sum_probs=203.6
Q ss_pred EeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCC-ceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 103 IDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN-AASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
..+..+.+|.+.|.++++.+.+|++|+.||+|++||+.+++.+..+..+. .+..+++ ++..++ ++.|+.|++||+.
T Consensus 164 ~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~dg~i~vwd~~ 241 (435)
T 1p22_A 164 ECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMA 241 (435)
T ss_dssp CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC--CTTEEEEEETTSCEEEEECS
T ss_pred eEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEE--cCCEEEEeeCCCcEEEEeCC
Confidence 35678899999999999966699999999999999999999999888763 3444555 566777 8899999999998
Q ss_pred CCcccc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEE
Q 014104 181 GLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258 (430)
Q Consensus 181 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~v 258 (430)
++.... ....++...+.++.+.+..+++|+.||.|++||+++++.+..+.+|...|.++.++ ++++++|+.||.|++
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~i~i 320 (435)
T 1p22_A 242 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRL 320 (435)
T ss_dssp SSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-TTEEEEEETTSCEEE
T ss_pred CCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-CCEEEEEeCCCeEEE
Confidence 876431 22333334456777788889999999999999999999999999999999999994 579999999999999
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc---------eeeeeecCCCceEEEEEeeCC
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK---------SLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~---------~~~~~~~~~~~v~~l~~~s~~ 329 (430)
||+++++.+..+.+ |...|.+++| ++.+|++|+.||.|++||+++++ .+..+.+|.+.|.+++ + +
T Consensus 321 wd~~~~~~~~~~~~-h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~--~ 394 (435)
T 1p22_A 321 WDIECGACLRVLEG-HEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-F--D 394 (435)
T ss_dssp EETTTCCEEEEECC-CSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE-E--C
T ss_pred EECCCCCEEEEEeC-CcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEE-e--C
Confidence 99999999999987 8889999999 78899999999999999998766 7888999999999998 6 7
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
+.+|++++.||.|++||+.++......
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 421 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDPAAQAE 421 (435)
T ss_dssp SSCEEECCSSSEEEEEC----------
T ss_pred CCEEEEEeCCCEEEEEECCCCCCcccC
Confidence 889999999999999999876654443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=249.43 Aligned_cols=246 Identities=19% Similarity=0.168 Sum_probs=204.4
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee---cCCceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
.+..+.+|.+.|.+++| +++ +|++++.||.|++||+.+++....+. ....+..++|+++++.++ ++.++.|++|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 67889999999999999 455 99999999999999999887655543 345677899999999998 8889999999
Q ss_pred EcCCCcc-----cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEEC------------------CCCeeeEEeecCCC
Q 014104 178 RRNGLRS-----VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM------------------YSRKCSQIIRMHCA 234 (430)
Q Consensus 178 d~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~------------------~~~~~~~~~~~~~~ 234 (430)
|++.... ............+++.+.+..+++++.||.|++||+ .+++.+..+..|..
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 203 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence 9988752 111111233344555556667999999999999995 46788888989999
Q ss_pred CeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC--Cce--
Q 014104 235 PVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT--MKS-- 309 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~-- 309 (430)
.|.+++|+|+ +++++++.|+.|++||+++++.+..+.. |...|.+++|+|+++++++| .|+.|++|++++ ++.
T Consensus 204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC-SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc-CCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence 9999999976 7999999999999999999999999987 77899999999999988887 899999999987 420
Q ss_pred ------------------------------e------eee-ecCCCceEEEEEeeCCC---CeEEEEcCCCeEEEEEcCC
Q 014104 310 ------------------------------L------WET-RISPNVVYSLQHLQNDT---STLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 310 ------------------------------~------~~~-~~~~~~v~~l~~~s~~~---~~l~s~~~dg~i~vwd~~~ 349 (430)
. ..+ .+|...|.++++++++| .+|++|+.||.|++||+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 223 48999999998666887 9999999999999999976
Q ss_pred Cc
Q 014104 350 GE 351 (430)
Q Consensus 350 ~~ 351 (430)
++
T Consensus 362 ~~ 363 (372)
T 1k8k_C 362 LE 363 (372)
T ss_dssp HH
T ss_pred hh
Confidence 53
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=252.54 Aligned_cols=235 Identities=14% Similarity=0.143 Sum_probs=197.7
Q ss_pred cccceeEEEe-cC----C-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEec-CCCEEE-EEeCCeEEEEEcCC
Q 014104 111 HSVGVDQCRM-KR----G-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDF-DESKIV-GLIGTRICIWRRNG 181 (430)
Q Consensus 111 h~~~v~~~~~-~~----~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~ 181 (430)
|.+.|.+++| ++ + +|++|+.||.|++||+.+++.+..+..+ ..+..++|+| ++..++ ++.|+.|++||+.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 5678999999 44 4 8999999999999999999999999865 6678899999 888888 78899999999998
Q ss_pred CcccccC----CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec--------------------------
Q 014104 182 LRSVFPS----REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM-------------------------- 231 (430)
Q Consensus 182 ~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------------------------- 231 (430)
++..... ........+++.+.+..+++++.||.|++||+++++.+..+..
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 8754332 1222334455556677799999999999999998765544433
Q ss_pred --CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCce--------------eEEEecCCCCCeEEEEEecC--CCEEEEE
Q 014104 232 --HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR--------------VATLRSTDCTGIKTLCYNPC--SRLVFAG 293 (430)
Q Consensus 232 --~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~ 293 (430)
|...|.+++|+ ++++++++.|+.|++||+++++. +..+.. |...|.+++|+|+ +++|++|
T Consensus 228 ~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 228 DIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDY-SQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEEC-SSCCSSCCCCEECTTSSEEEEE
T ss_pred cCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccc-cCCcEEEEEEcCCCCCcEEEEE
Confidence 89999999998 77999999999999999987754 667766 7789999999999 9999999
Q ss_pred eCCCeEEEEeCCCCcee----eeeecC--CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 294 TTAGYASCWDLRTMKSL----WETRIS--PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 294 ~~dg~i~i~d~~~~~~~----~~~~~~--~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+.||.|++||+.++++. ..+..| ...|.+++ |+|++++|++++.||.|++||+.
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTS-FSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEE-ECTTSSEEEEEETTSEEEEEEC-
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEE-eCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999987644 367777 68999999 99999999999999999999985
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=247.56 Aligned_cols=247 Identities=15% Similarity=0.193 Sum_probs=200.3
Q ss_pred EEEEec-cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 105 IDQWKA-HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 105 ~~~l~~-h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
...+.. |.+.|.+++| +++ +|++|+.||.|++||+.+++.+..+..+ ..+..++| +++.++ ++.|+.|++||+
T Consensus 126 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~ 203 (401)
T 4aez_A 126 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDV 203 (401)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred eEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEec
Confidence 334444 8999999999 455 9999999999999999999999888865 34455655 677888 889999999999
Q ss_pred CCCcc---cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEe--C
Q 014104 180 NGLRS---VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGS--S 252 (430)
Q Consensus 180 ~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~--~ 252 (430)
..... .+..+.+. ...+++.+.+..+++|+.||.|++||+++++.+..+..|...|.+++|+|+ .++++++ .
T Consensus 204 ~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 204 RIANHQIGTLQGHSSE-VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp TSSSCEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred ccCcceeeEEcCCCCC-eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence 85442 23333333 334555556677999999999999999999999999999999999999984 5777765 7
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEE--EeCCCeEEEEeCCCCcee--eeeecCCCceEEEEEeeC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFA--GTTAGYASCWDLRTMKSL--WETRISPNVVYSLQHLQN 328 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~s~ 328 (430)
|+.|++||+.+++.+..+. +...|.+++|+|+++++++ |+.||.|++||+.+++.. ..+.+|...|.+++ |+|
T Consensus 283 d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~-~s~ 359 (401)
T 4aez_A 283 DKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA-LSP 359 (401)
T ss_dssp TCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE-ECT
T ss_pred CCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE-ECC
Confidence 9999999999999999887 5678999999999999998 448999999999986544 34678999999999 999
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 329 DTSTLVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 329 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
++++|++++.||.|++||+.+++.+....
T Consensus 360 dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 360 DGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp TSSEEEEECTTSEEEEEECCC--------
T ss_pred CCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 99999999999999999999988776654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-31 Score=229.83 Aligned_cols=280 Identities=12% Similarity=0.053 Sum_probs=188.2
Q ss_pred EeEEEEeccccc----eeEEEec--CC---eEEEEeCCCeEEEEecCCC---eeEEeeecCC-ceeEEEEecCCCEEEEE
Q 014104 103 IDIDQWKAHSVG----VDQCRMK--RG---LILTGVGDKVMRLWSLEGY---KCVEEYSLPN-AASLVDFDFDESKIVGL 169 (430)
Q Consensus 103 ~~~~~l~~h~~~----v~~~~~~--~~---~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 169 (430)
..+.+|+...+. +.++.++ +. .+++++. ..|++|+..++ +.+++..+++ .+..+.+.||...|++-
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 104 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCV 104 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeee
Confidence 356677766543 3445552 22 5666665 69999999988 8888888765 34445555544333311
Q ss_pred eCCe-----EEEEEcCCC----cccccCCCCceeeeeEEEEcCCceEEEe---cCCeEEEEEC-CCCeeeEEeecCCCCe
Q 014104 170 IGTR-----ICIWRRNGL----RSVFPSREGTFMKGLCMRYFDPEAVVGC---EDGTARVFDM-YSRKCSQIIRMHCAPV 236 (430)
Q Consensus 170 ~~~~-----i~vwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~vwd~-~~~~~~~~~~~~~~~i 236 (430)
.=|. |+..-+... ..... ..++...+..+ ....++.++ .|+.|++|++ .+++.+..+.+|...+
T Consensus 105 ~~~~~~~~~v~sla~spd~~~~~~~l~-s~g~~~~v~~l--~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v 181 (356)
T 2w18_A 105 ALGNLEIREIRALFCSSDDESEKQVLL-KSGNIKAVLGL--TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEE 181 (356)
T ss_dssp EECSSSEEEEEEECC------CCEEEE-EEEEEEEEEEE--TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSS
T ss_pred eeccccccceEEEEECCCccccccEEE-eCCCeEEEEec--CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCce
Confidence 1111 111000000 00000 01111111111 223355554 4999999999 4588888888999999
Q ss_pred EEEEecC---C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCC--CCeEEEEEecCCCEE------------EEEeCCCe
Q 014104 237 TSLSLSE---D-QLIISGSSLGSIAISGLSSDQRVATLRSTDC--TGIKTLCYNPCSRLV------------FAGTTAGY 298 (430)
Q Consensus 237 ~~~~~~~---~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l------------~~~~~dg~ 298 (430)
..++|++ + ..+++|+.|++|++||+.++++++++.+++. ..+.+++|+|+|.++ ++|+.|++
T Consensus 182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t 261 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ 261 (356)
T ss_dssp CEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE
T ss_pred eeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence 9988886 3 7999999999999999999999999986432 368888999999876 56788999
Q ss_pred EEEEeCCCCceeeee-----ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCce
Q 014104 299 ASCWDLRTMKSLWET-----RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGV 373 (430)
Q Consensus 299 i~i~d~~~~~~~~~~-----~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~ 373 (430)
|++||..+++.+..+ .+|...+.+.. .++.++++++.|++|+|||+.+++++.++.+|..
T Consensus 262 IklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~---~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~------------ 326 (356)
T 2w18_A 262 LIVINPKTTLSVGVMLYCLPPGQAGRFLEGD---VKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSD------------ 326 (356)
T ss_dssp EEEEETTTTEEEEEEEECCCTTCCCCEEEEE---EETTEEEEEETTSCEEEEETTTCSEEEEECCC--------------
T ss_pred EEEEECCCCEEEEEEEeeccCCCcceeEccc---cCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCC------------
Confidence 999999999887654 36655554433 3478999999999999999999999999976544
Q ss_pred EEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 374 IERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 374 v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
..+.+++| ||++|+||+.|++|||||+.
T Consensus 327 -----------------------~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 327 -----------------------QHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp -----------------------CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred -----------------------CeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 23345666 57789999999999999963
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=274.67 Aligned_cols=252 Identities=14% Similarity=0.166 Sum_probs=200.2
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecC--CCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEc
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRR 179 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~ 179 (430)
+..+.||.+.|++++| +++ +|++|+.||+|++||+. +++.+..+.+| ..+..++|+++.
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~---------------- 65 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---------------- 65 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT----------------
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC----------------
Confidence 3568899999999999 455 99999999999999998 45666666655 445556666541
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecC---CCEEEEEeCCC
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSE---DQLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~---~~~l~~~~~dg 254 (430)
.+..+++|+.||.|++||+.+++ .+..+.+|...|.+++|+| +..+++|+.||
T Consensus 66 ----------------------~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 66 ----------------------FGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp ----------------------SCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ----------------------CCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 02237889999999999998886 6778888999999999997 47999999999
Q ss_pred eEEEEeCCCCc--eeEEEecCCCCCeEEEEEec-------------CCCEEEEEeCCCeEEEEeCCCC----ceeeeeec
Q 014104 255 SIAISGLSSDQ--RVATLRSTDCTGIKTLCYNP-------------CSRLVFAGTTAGYASCWDLRTM----KSLWETRI 315 (430)
Q Consensus 255 ~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~-------------~~~~l~~~~~dg~i~i~d~~~~----~~~~~~~~ 315 (430)
.|++||++++. ....+.+ |...|.+++|+| ++.++++|+.||.|++||++++ .....+.+
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~-~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~ 202 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDA-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG 202 (753)
T ss_dssp EEEEEECCSSSCCCCEEEEC-CSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC
T ss_pred cEEEEEeecCCCcceeEeec-CCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC
Confidence 99999998873 3344554 788999999999 5899999999999999999876 55667889
Q ss_pred CCCceEEEEEeeCC---CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCC
Q 014104 316 SPNVVYSLQHLQND---TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIP 392 (430)
Q Consensus 316 ~~~~v~~l~~~s~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~ 392 (430)
|...|.+++ |+|+ +.+|++++.||.|++||+.+++...... ....
T Consensus 203 h~~~V~~l~-~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-------------------------------~~~~ 250 (753)
T 3jro_A 203 HSDWVRDVA-WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT-------------------------------LLKE 250 (753)
T ss_dssp CSSCEEEEE-ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC-------------------------------BSSS
T ss_pred CCCcEEEEE-eccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE-------------------------------Eecc
Confidence 999999999 9999 8999999999999999998764211100 0111
Q ss_pred CCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 393 KTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 393 ~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..|...|++++| +++++++|+.||.|++|++..+.
T Consensus 251 ~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 251 EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 346778999999 58899999999999999998543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=248.04 Aligned_cols=237 Identities=11% Similarity=0.071 Sum_probs=188.0
Q ss_pred cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEE
Q 014104 121 KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCM 199 (430)
Q Consensus 121 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 199 (430)
.++ ++++|+.||+|++||+.+++.+..+.. ..+..+.++|+ .+.++.|+.+++|+...
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~--~~s~s~D~~i~~w~~~~------------------ 104 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITT-PNPRTGGEHPA--IISRGPCNRLLLLYPGN------------------ 104 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEE-ECCCTTCCCCS--EEEECSTTEEEEEETTT------------------
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEec-CCceeeeeCCc--eEEecCCCeEEEEEccC------------------
Confidence 344 999999999999999999988877762 23444555555 22267777777776543
Q ss_pred EEcCCceEEEecCCeEEEEECCCCeeeEEee-cCCCCeEEEEecC--C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCC
Q 014104 200 RYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSE--D-QLIISGSSLGSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 200 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 275 (430)
.+.+||+.+++.+..+. .|.++|.+++++| + +++++++.||+|++||+++++........+.
T Consensus 105 --------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~ 170 (343)
T 3lrv_A 105 --------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD 170 (343)
T ss_dssp --------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSS
T ss_pred --------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCC
Confidence 45667877887666665 6778999999998 6 7999999999999999999999777766566
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee-eeeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 276 TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL-WETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
..+.+++|+|+|.+|++|+.||.|++||+++++.+ ..+.. |.+.|.+++ |+|++.+|++++ |+.|++||+++++.+
T Consensus 171 ~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~-fs~~g~~l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 171 VEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVK-FADNGYWMVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp CCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEE-ECTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEE-EeCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence 68999999999999999999999999999999887 77888 999999999 999999999999 559999999987765
Q ss_pred EEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCe--eEEEE--cCeEEEEeeC-CCeEEEEEecCCC
Q 014104 354 SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPI--TCLAV--GMKKVVTTHN-SKYIRLWKFNYSD 427 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v--~~v~~--~~~~l~t~~~-Dg~v~vw~~~~~~ 427 (430)
..+..... |...+ .+++| ++++|++++. |+.|+||+++.+.
T Consensus 249 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 249 LAYPTYTI---------------------------------PEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp BSSCCCBC--------------------------------------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred eeeccccc---------------------------------ccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence 44432111 11122 46777 5899999998 9999999997654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-31 Score=249.71 Aligned_cols=261 Identities=15% Similarity=0.179 Sum_probs=198.8
Q ss_pred CEeEEEEeccccceeEEEe-cC-C-eEEEEeCCCeEEEEecCC----------CeeEEeeecC-CceeEEEEecCCCEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KR-G-LILTGVGDKVMRLWSLEG----------YKCVEEYSLP-NAASLVDFDFDESKIV 167 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~-~-~l~s~~~dg~i~iwd~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~l~ 167 (430)
........+|.+.|++++| ++ + +|++++.||.|++||+.+ .+.+..+..| ..+..++|++++..
T Consensus 118 ~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-- 195 (430)
T 2xyi_A 118 KIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-- 195 (430)
T ss_dssp CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT--
T ss_pred ceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC--
Confidence 3445677889999999999 43 3 899999999999999986 4555555554 33444666655441
Q ss_pred EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-------eeEEeecCCCCeEEEE
Q 014104 168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-------CSQIIRMHCAPVTSLS 240 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-------~~~~~~~~~~~i~~~~ 240 (430)
.+++|+.||.|++||+.++. ....+.+|...|.+++
T Consensus 196 -------------------------------------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 238 (430)
T 2xyi_A 196 -------------------------------------YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238 (430)
T ss_dssp -------------------------------------EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEE
T ss_pred -------------------------------------eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeE
Confidence 26677777777777776532 1456678999999999
Q ss_pred ecC-C-CEEEEEeCCCeEEEEeCCCC---ceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCC-Cceeeee
Q 014104 241 LSE-D-QLIISGSSLGSIAISGLSSD---QRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRT-MKSLWET 313 (430)
Q Consensus 241 ~~~-~-~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~-~~~~~~~ 313 (430)
|+| + .++++++.||.|++||++++ +.+..+.. |...|++++|+|++. ++++|+.||.|++||+++ .+++..+
T Consensus 239 ~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~ 317 (430)
T 2xyi_A 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe
Confidence 997 4 78999999999999999987 56677765 888999999999987 688999999999999998 5678889
Q ss_pred ecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCC
Q 014104 314 RISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIP 392 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~ 392 (430)
..|...|.++. |+|+++ +|++++.||.|++||+........... ..++ ...+....
T Consensus 318 ~~h~~~v~~i~-~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~~------------~~~~~~~~ 374 (430)
T 2xyi_A 318 ESHKDEIFQVQ-WSPHNETILASSGTDRRLHVWDLSKIGEEQSTED----------AEDG------------PPELLFIH 374 (430)
T ss_dssp ECCSSCEEEEE-ECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHH----------HHHC------------CTTEEEEC
T ss_pred ecCCCCEEEEE-ECCCCCCEEEEEeCCCcEEEEeCCCCccccCccc----------cccC------------CcceEEEc
Confidence 99999999999 999985 689999999999999986321110000 0000 00111122
Q ss_pred CCCCCCeeEEEEc--Ce-EEEEeeCCCeEEEEEecC
Q 014104 393 KTIRPPITCLAVG--MK-KVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 393 ~~h~~~v~~v~~~--~~-~l~t~~~Dg~v~vw~~~~ 425 (430)
.+|...|++++|+ +. +|++++.||.|+||++..
T Consensus 375 ~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 375 GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 4577899999994 55 899999999999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=262.23 Aligned_cols=226 Identities=12% Similarity=0.042 Sum_probs=177.4
Q ss_pred cCCCEEE-EEeCCeEEEEEcCCCccc------ccCCCCceeeeeEEEEc------CCceEEEecCCeEEEEECCCCee--
Q 014104 161 FDESKIV-GLIGTRICIWRRNGLRSV------FPSREGTFMKGLCMRYF------DPEAVVGCEDGTARVFDMYSRKC-- 225 (430)
Q Consensus 161 ~~~~~l~-~~~~~~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~------~~~l~~~~~dg~i~vwd~~~~~~-- 225 (430)
|+++.++ ++.|+.|++||+++++.. +..+.+. +..+++.+. +..|++++.||+|++||+.+++.
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~-V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGE-VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCS-EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCc-EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 3444455 567889999999876532 1222232 344566654 24699999999999999987642
Q ss_pred ---------eEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc-eeEEEecCCCCCeEEE--EEecCC-CEEEE
Q 014104 226 ---------SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ-RVATLRSTDCTGIKTL--CYNPCS-RLVFA 292 (430)
Q Consensus 226 ---------~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~ 292 (430)
...+.+|...|++++|+++..|++|+.||+|++||++++. +...+.+ |...|.++ .|+|+| ++|++
T Consensus 250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H~~~V~sv~~~~s~~g~~~laS 328 (524)
T 2j04_B 250 HVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQV-HDSYILSVSTAYSDFEDTVVST 328 (524)
T ss_dssp SEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEEC-SSSCEEEEEEECCTTSCCEEEE
T ss_pred ccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeec-ccccEEEEEEEcCCCCCeEEEE
Confidence 2467789999999999987899999999999999999764 4455666 88899999 578888 89999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCC--ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccC
Q 014104 293 GTTAGYASCWDLRTMKSLWETRISPN--VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKV 370 (430)
Q Consensus 293 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~ 370 (430)
|+.|++|++||+++++++..+.+|.. .|.+++ |+|+++.+++++.|++|++||++++.++.++.+|.
T Consensus 329 ~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~-fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~---------- 397 (524)
T 2j04_B 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV-YCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE---------- 397 (524)
T ss_dssp EETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE-EETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS----------
T ss_pred eccCCeEEEEECCCCCcccccccccccCcccceE-eCCCcCeEEEeCCCCcEEEEECcccccceeeecCC----------
Confidence 99999999999999888877777753 478898 99999999999999999999999998888777644
Q ss_pred CceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecC
Q 014104 371 SGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 371 d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
..|++|+| ++++|++|+.||+|++|++..
T Consensus 398 --------------------------~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 398 --------------------------TTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp --------------------------SCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred --------------------------CceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 47888888 477899999999999999754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=250.80 Aligned_cols=274 Identities=13% Similarity=0.114 Sum_probs=213.5
Q ss_pred ceeEEEecCC---eEEEEeCCCeEEEEecCCCe----eEEeeecC-CceeEEEEec-CCCEEE-EEeCCeEEEEEcCCCc
Q 014104 114 GVDQCRMKRG---LILTGVGDKVMRLWSLEGYK----CVEEYSLP-NAASLVDFDF-DESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 114 ~v~~~~~~~~---~l~s~~~dg~i~iwd~~~~~----~~~~~~~~-~~~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
....+++++. ++++++.||.|+|||+.... .+..+.+| ..+..++|+| +++.|+ ++.|+.|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 3445666544 45568899999999986542 23344444 5678899999 888888 8889999999998763
Q ss_pred c---------cccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEEe--ecCCCCeEEEEecCC-CEEEEE
Q 014104 184 S---------VFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQII--RMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 184 ~---------~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
. .+..+... +..+++.+.+ ..+++++.||.|++||+++++.+..+ ..|...|.+++|+|+ .+++++
T Consensus 116 ~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKR-VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CSSCBCSCSEEEECCSSC-EEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CccccCCceEEecCCCCe-EEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 1 22333332 3445566665 35999999999999999999999999 789999999999976 799999
Q ss_pred eCCCeEEEEeCCCCceeEEE-ecCCCC-CeEEEEEecCCCEEEEE---eCCCeEEEEeCCCCce-eeeee-cCCCceEEE
Q 014104 251 SSLGSIAISGLSSDQRVATL-RSTDCT-GIKTLCYNPCSRLVFAG---TTAGYASCWDLRTMKS-LWETR-ISPNVVYSL 323 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~-~~~~~~-~v~~~~~~~~~~~l~~~---~~dg~i~i~d~~~~~~-~~~~~-~~~~~v~~l 323 (430)
+.|+.|++||+++++.+..+ .. |.+ .+.++.|+|++++|++| +.|+.|++||+++++. +.... .|...+.++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 273 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRP-HEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP 273 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECS-SCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccC-CCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence 99999999999999999988 45 555 48999999999999999 7899999999998664 33332 466789999
Q ss_pred EEeeCCCCeEE-EEcCCCeEEEEEcCCCce-EEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE
Q 014104 324 QHLQNDTSTLV-VGGIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC 401 (430)
Q Consensus 324 ~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 401 (430)
+ |+|++++|+ +|+.||.|++||+.+++. +..+..+. |...|++
T Consensus 274 ~-~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~----------------------------------~~~~v~~ 318 (402)
T 2aq5_A 274 F-FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS----------------------------------SKESQRG 318 (402)
T ss_dssp E-EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC----------------------------------CSSCCSE
T ss_pred E-EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc----------------------------------cCCcccc
Confidence 8 999999886 566899999999998874 55555432 3357888
Q ss_pred EEEc--CeEEEEeeCCCeEEEEEecCC
Q 014104 402 LAVG--MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 402 v~~~--~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
++|. +.+++ +.|+.+++|++.++
T Consensus 319 ~~~sp~~~~~~--s~~~~~~~~~l~~~ 343 (402)
T 2aq5_A 319 MGYMPKRGLEV--NKCEIARFYKLHER 343 (402)
T ss_dssp EEECCGGGSCG--GGTEEEEEEEEETT
T ss_pred eEEecccccce--ecceeEEEEEcCCC
Confidence 8884 44444 45679999999875
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=246.36 Aligned_cols=242 Identities=15% Similarity=0.171 Sum_probs=195.5
Q ss_pred EeccccceeEEEe-cC---C-eEEEEeCCCeEEEEecCCCe-eEEeeecC-CceeEEE------EecCCCEEE-EEeCCe
Q 014104 108 WKAHSVGVDQCRM-KR---G-LILTGVGDKVMRLWSLEGYK-CVEEYSLP-NAASLVD------FDFDESKIV-GLIGTR 173 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~---~-~l~s~~~dg~i~iwd~~~~~-~~~~~~~~-~~~~~~~------~~~~~~~l~-~~~~~~ 173 (430)
..+|.+.|.+++| ++ + +|++|+.||.|++||+.+++ .+..+..+ ..+..+. |+++++.|+ ++.|+.
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 3479999999999 44 4 99999999999999999887 77788766 4466674 467898988 888999
Q ss_pred EEEEEcCCCcc---cccCCCCc---eeeeeE----EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC
Q 014104 174 ICIWRRNGLRS---VFPSREGT---FMKGLC----MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243 (430)
Q Consensus 174 i~vwd~~~~~~---~~~~~~~~---~~~~~~----~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~ 243 (430)
|++||+.++.. .+..+.++ ....+. +.+.+..+++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 99999998752 22222322 222222 235666699999999999999999887544 56889999999997
Q ss_pred ---C-CEEEEEeCCCeEEEEeCCCCceeEEEe-----cCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCCC------
Q 014104 244 ---D-QLIISGSSLGSIAISGLSSDQRVATLR-----STDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRTM------ 307 (430)
Q Consensus 244 ---~-~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~------ 307 (430)
+ +.+++++.||.|++||+++++....+. . |...|.+++|+|+++ +|++++.||.|++||++++
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKA-HKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEEC-CSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCC-CcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc
Confidence 5 899999999999999998877655544 4 888999999999998 8999999999999999854
Q ss_pred -------------ceeeeeecCCCceEEEEEeeCCCCeEE-EEcCCCeEEEEEcCCCce
Q 014104 308 -------------KSLWETRISPNVVYSLQHLQNDTSTLV-VGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 308 -------------~~~~~~~~~~~~v~~l~~~s~~~~~l~-s~~~dg~i~vwd~~~~~~ 352 (430)
+.+..+.+|...|.+++ |+|++++|+ +++.||.|++||+.+.+.
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLSTQPISSLD-WSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECCSSCEEEEE-ECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cCCCCccccccccceeeccccCCCCeeEEE-EcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 35667888999999999 999999998 899999999999987654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-31 Score=248.16 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=215.6
Q ss_pred ccceeEEEe-cCCeEEEEeCCCeEEEEecCCCe---eEEeeecCC-----------------------------------
Q 014104 112 SVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYK---CVEEYSLPN----------------------------------- 152 (430)
Q Consensus 112 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~----------------------------------- 152 (430)
..++.+++| ++|.++.++.++.|++||+.+++ .+..+..+.
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred cccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 357889999 46644445568899999999988 666555321
Q ss_pred --------------------ceeEEEEecCCCEE-E-EEeCCeEEEEEcC--CCcccccC---CCCceeeeeEEEEcCCc
Q 014104 153 --------------------AASLVDFDFDESKI-V-GLIGTRICIWRRN--GLRSVFPS---REGTFMKGLCMRYFDPE 205 (430)
Q Consensus 153 --------------------~~~~~~~~~~~~~l-~-~~~~~~i~vwd~~--~~~~~~~~---~~~~~~~~~~~~~~~~~ 205 (430)
.+..++|+|+++.| + ++.|+.|++||+. +++..... ........+++.+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 36779999999997 5 6679999999998 66533221 11223345666667777
Q ss_pred eEEEecCCeEEEEECCCCeeeE----EeecCCCCeEEEEecCC----CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQ----IIRMHCAPVTSLSLSED----QLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
|++|+.+|.|++|++.+++... .+.+|...|.+++|+|+ .+|++|+.|+.|++||+++++.+..+...|...
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 9999999999999998877554 77889999999999975 489999999999999999999888855448889
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-------------------------CCceEEEEEeeCCCCe
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-------------------------PNVVYSLQHLQNDTST 332 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------------------------~~~v~~l~~~s~~~~~ 332 (430)
|.+++|+ ++++|++++.|+.|++||+++++.+..+..+ ...|.++. ++|++++
T Consensus 244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~~~~~~ 321 (450)
T 2vdu_B 244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII-KSKNLPF 321 (450)
T ss_dssp EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE-ECSSSSE
T ss_pred eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE-EeCCCCE
Confidence 9999999 9999999999999999999999888777532 35688998 9999999
Q ss_pred EEEEc-CCCeEEEEEc--CCC---ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc-
Q 014104 333 LVVGG-IDGVLRVLDQ--NTG---EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG- 405 (430)
Q Consensus 333 l~s~~-~dg~i~vwd~--~~~---~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~- 405 (430)
|++++ .|+.|++||+ .++ +.+..+..+ ..|.+++|+
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-------------------------------------~~v~~~~~~~ 364 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-------------------------------------YNVISLSAHN 364 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-------------------------------------SCEEEEEEET
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-------------------------------------CceEEEEecC
Confidence 99998 8999999999 555 445555432 468888885
Q ss_pred CeEEEEeeC-------CCeEEEEEecCC
Q 014104 406 MKKVVTTHN-------SKYIRLWKFNYS 426 (430)
Q Consensus 406 ~~~l~t~~~-------Dg~v~vw~~~~~ 426 (430)
+..+++.+. +..|++|.+...
T Consensus 365 ~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 365 DEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp TEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 344544432 556899988653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-30 Score=233.79 Aligned_cols=241 Identities=16% Similarity=0.184 Sum_probs=198.9
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
.+.+|...|++++| +++ +|++|+.||+|++||+++++.+..+.+|. ....++++++..++ ++.++.+.+|+.....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~-~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~ 140 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS-ARVGSLSWNSYILSSGSRSGHIHHHDVRVAE 140 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEEETTEEEEEETTSEEEEEETTSSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCcc-ceEEEeecCCCEEEEEecCCceEeeecCCCc
Confidence 34578889999999 455 99999999999999999999999998764 34567788888888 8889999999998775
Q ss_pred ccccCCCCc--eeeeeEEEEcCCceEEEecCCeEEEEECCCCee----eEEeecCCCCeEEEEecCC--CE--EEEEeCC
Q 014104 184 SVFPSREGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC----SQIIRMHCAPVTSLSLSED--QL--IISGSSL 253 (430)
Q Consensus 184 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~~~~--~~--l~~~~~d 253 (430)
.......++ ......+...+..+++++.||.|++||+++++. ......+.+.|.++.++|. .. +++++.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 220 (318)
T 4ggc_A 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD 220 (318)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTT
T ss_pred eeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCC
Confidence 433222222 223344555666799999999999999988753 3455678889999999964 33 3567789
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT--TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
+.|++||.+......... +...+..+.|+|+++.+++++ .|+.|++||+++++++.++.+|.+.|++++ |+|+++
T Consensus 221 ~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~-~spdg~ 297 (318)
T 4ggc_A 221 RHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT-MSPDGA 297 (318)
T ss_dssp CEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSS
T ss_pred CEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EcCCCC
Confidence 999999999888877766 667899999999999888654 799999999999999999999999999999 999999
Q ss_pred eEEEEcCCCeEEEEEcCCCc
Q 014104 332 TLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~ 351 (430)
+|++|+.||+|+|||+.+..
T Consensus 298 ~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 298 TVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CEEEEETTTEEEEECCSCCC
T ss_pred EEEEEecCCeEEEEECCCCC
Confidence 99999999999999997653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-30 Score=233.80 Aligned_cols=247 Identities=13% Similarity=0.131 Sum_probs=201.7
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC---eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRI 174 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i 174 (430)
......+.+|.+.|.+++| +++ ++++|+.||.|++|++... +.+..+..+ ..+..+++ +++.++ ++.|+.|
T Consensus 49 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i 126 (313)
T 3odt_A 49 QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTA 126 (313)
T ss_dssp SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEE
T ss_pred CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCE
Confidence 4467788899999999999 455 9999999999999998754 455566554 34444555 677888 8889999
Q ss_pred EEEEcCCCcccccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEecCCCEEEEEeC
Q 014104 175 CIWRRNGLRSVFPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 175 ~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~l~~~~~ 252 (430)
++||.......+..+...+ ..+.+.+ .+..+++++.||.|++|| .++....+.. |...|.+++|+|+..+++++.
T Consensus 127 ~~~d~~~~~~~~~~~~~~v-~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 203 (313)
T 3odt_A 127 KVWKEGSLVYNLQAHNASV-WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSN 203 (313)
T ss_dssp EEEETTEEEEEEECCSSCE-EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEEEEET
T ss_pred EEEcCCcEEEecccCCCce-eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEEEccC
Confidence 9999333333444454443 3344444 666799999999999999 5667777776 889999999998866999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
||.|++||+++++.+..+.. |...|.+++|+|++ .|++++.||.|++||+++++.+..+..|...|.+++ |+|+++
T Consensus 204 dg~i~i~d~~~~~~~~~~~~-~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~-~~~~~~- 279 (313)
T 3odt_A 204 DGLIKLVDMHTGDVLRTYEG-HESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD-CMSNGD- 279 (313)
T ss_dssp TSEEEEEETTTCCEEEEEEC-CSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEE-ECTTSC-
T ss_pred CCeEEEEECCchhhhhhhhc-CCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEE-EccCCC-
Confidence 99999999999999999987 88899999999999 588999999999999999999999999999999999 999998
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEE
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCV 357 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~ 357 (430)
+++++.||.|++||+++++.+....
T Consensus 280 ~~~~~~dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 280 IIVGSSDNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEEEETTSCEEEEESCGGGCCC---
T ss_pred EEEEeCCCcEEEEeCCCCceeehhh
Confidence 6678899999999999887655443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-31 Score=243.97 Aligned_cols=241 Identities=10% Similarity=0.116 Sum_probs=188.8
Q ss_pred EEeccccceeEEEecCCeEEEE-----------eCCCeEEEEecCCCee-E---Eeeec------CCceeEEEEecCCCE
Q 014104 107 QWKAHSVGVDQCRMKRGLILTG-----------VGDKVMRLWSLEGYKC-V---EEYSL------PNAASLVDFDFDESK 165 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~~~l~s~-----------~~dg~i~iwd~~~~~~-~---~~~~~------~~~~~~~~~~~~~~~ 165 (430)
.|.+|.+.|.+++++.+.+++| +.|+++++|++.+... + ..... ...+.+++|+|||++
T Consensus 68 ~l~~~~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~ 147 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTV 147 (365)
T ss_dssp ECCTTSCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSC
T ss_pred EccCCCCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCE
Confidence 4678899999999876666655 4578899999865432 1 11111 123667999999999
Q ss_pred EE-EE--eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeE--EeecCCCCeEEEE
Q 014104 166 IV-GL--IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTSLS 240 (430)
Q Consensus 166 l~-~~--~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~ 240 (430)
++ ++ .|+.|++||+++++.+........+..+++.+++..+++++.+ .+.+|+..+++.+. ....|...|.+++
T Consensus 148 la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 226 (365)
T 4h5i_A 148 AAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKIN 226 (365)
T ss_dssp EEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEE
T ss_pred EEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEE
Confidence 87 44 4799999999998865543333345567777777778888755 56667766776553 3456888999999
Q ss_pred ecCC-CEEEEEeCCC----eEEEEeCCCCce----eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 241 LSED-QLIISGSSLG----SIAISGLSSDQR----VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 241 ~~~~-~~l~~~~~dg----~i~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
|+|+ ..+++++.|+ .++.||+..... ...+.+ |...|++++|+|+|++||+|+.|++|+|||+++++++.
T Consensus 227 fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~ 305 (365)
T 4h5i_A 227 FIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN-RFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK 305 (365)
T ss_dssp EEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES-SCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecC-CCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE
Confidence 9976 7888888777 688999876654 234555 77899999999999999999999999999999999998
Q ss_pred ee-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 312 ET-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 312 ~~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
.+ .+|...|++++ |+|||++|++||.|++|+|||+...
T Consensus 306 ~~~~gH~~~V~~v~-fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 306 IFKQAHSFAITEVT-ISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EETTSSSSCEEEEE-ECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EecCcccCCEEEEE-ECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 75 78999999999 9999999999999999999999643
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-31 Score=244.26 Aligned_cols=259 Identities=14% Similarity=0.164 Sum_probs=202.3
Q ss_pred EecCCCeeEEeeecC-CceeEEEEecCC-CEEE-EEeCCeEEEEEcCCCcccccC----CCCceeeeeEEEE-cCCceEE
Q 014104 137 WSLEGYKCVEEYSLP-NAASLVDFDFDE-SKIV-GLIGTRICIWRRNGLRSVFPS----REGTFMKGLCMRY-FDPEAVV 208 (430)
Q Consensus 137 wd~~~~~~~~~~~~~-~~~~~~~~~~~~-~~l~-~~~~~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~-~~~~l~~ 208 (430)
|++...+....+..+ ..+..++|++++ ++|+ ++.|+.|++||+.+++..... +.. .+..+++.+ .+..+++
T Consensus 58 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s 136 (383)
T 3ei3_B 58 RSLKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGD-AITGMKFNQFNTNQLFV 136 (383)
T ss_dssp HHHTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTC-BEEEEEEETTEEEEEEE
T ss_pred ccccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCC-ceeEEEeCCCCCCEEEE
Confidence 344555666666665 567889999998 7888 888999999999987643222 222 233445554 3456999
Q ss_pred EecCCeEEEEECCCCeeeEEeecC---CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe
Q 014104 209 GCEDGTARVFDMYSRKCSQIIRMH---CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN 284 (430)
Q Consensus 209 ~~~dg~i~vwd~~~~~~~~~~~~~---~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 284 (430)
++.|+.|++||+.+ +.+..+..+ ...|.+++|+|+ .++++|+.|+.|++||+ +++.+..+.. |...|.+++|+
T Consensus 137 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-h~~~v~~~~~~ 213 (383)
T 3ei3_B 137 SSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL-HKAKVTHAEFN 213 (383)
T ss_dssp EETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC-SSSCEEEEEEC
T ss_pred EeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc-CCCcEEEEEEC
Confidence 99999999999985 555566544 478999999976 89999999999999999 5778888887 88899999999
Q ss_pred cCCC-EEEEEeCCCeEEEEeCCC----CceeeeeecCCCceEEEEEeeC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 285 PCSR-LVFAGTTAGYASCWDLRT----MKSLWETRISPNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 285 ~~~~-~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
|+++ +|++++.|+.|++||+++ +..+..+ +|...|.+++ |+| ++.+|++++.|+.|++||+.+++....+..
T Consensus 214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~-~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAY-FNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEE-ECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEE-EcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 9999 999999999999999998 5555555 6899999999 999 999999999999999999999988888876
Q ss_pred ccCcce------eeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 359 DIGSAS------SSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 359 ~~~~~~------~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|..... .+.+++ ...+.++++ ++++ +|+.||.|++||+.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~p-------------------------~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~ 342 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHP-------------------------MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGL 342 (383)
T ss_dssp CCBCCCTTSCCCCCEECS-------------------------SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCE
T ss_pred ccccccccccceEEeccC-------------------------CCCceEEEecCCccc--ccCCCCeEEEEecCCCce
Confidence 654110 011111 124445555 4655 899999999999988764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-29 Score=232.59 Aligned_cols=255 Identities=11% Similarity=0.092 Sum_probs=210.7
Q ss_pred CCEeEEEEeccccceeEEEe-cCC-eE-EEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRIC 175 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~ 175 (430)
....+..+.+|.. +.+++| +++ ++ ++++.|++|++||+.+++.+..+..+..+..++|+|+++.++ ++ .++.|+
T Consensus 21 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 21 SNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp TTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEE
Confidence 3456677777755 799999 566 55 677799999999999999999999888888999999999886 44 469999
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-EEEeC
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSS 252 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~ 252 (430)
+||+.+++.............+++.+++..+ ++++.++.|++||+.+++.+..+..+ ..+.+++|+|+ +.+ ++++.
T Consensus 100 v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~ 178 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD 178 (391)
T ss_dssp EEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT
T ss_pred EEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCC
Confidence 9999988754433333334556666667666 68888999999999999998888765 55799999976 555 67788
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe---CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT---TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
++.|++||+++++.+..+. +...+.+++|+|++++|++++ .++.|++||+++++.+..+..|. .+.+++ ++|+
T Consensus 179 ~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~-~s~d 254 (391)
T 1l0q_A 179 SMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIA-VTPD 254 (391)
T ss_dssp TTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEE-ECTT
T ss_pred CCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEE-EccC
Confidence 9999999999999888877 556899999999999999887 68999999999999888888764 578888 9999
Q ss_pred CCeE-EEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 330 TSTL-VVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 330 ~~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+++| ++++.|+.|++||+.+++.+..+..+..
T Consensus 255 g~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 255 GKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 9977 6778999999999999999999987655
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-30 Score=236.10 Aligned_cols=262 Identities=12% Similarity=0.109 Sum_probs=215.9
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 201 (430)
.+++++.|+.|++||+.+++.+..+..+..+..++|+|+++.++ ++.++.|++||+.+++.............+++.+
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp 83 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSP 83 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECT
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECC
Confidence 67889999999999999999999999888888999999999875 4479999999999887654433333445566666
Q ss_pred cCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-EEEeCCCeEEEEeCCCCceeEEEecCCCCCe
Q 014104 202 FDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIAISGLSSDQRVATLRSTDCTGI 278 (430)
Q Consensus 202 ~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v 278 (430)
++..++ +++.++.|++||+.+++.+..+..+ ..+.+++|+|+ +.+ ++++.++.|++||+.+++.+..+.. ...+
T Consensus 84 dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~ 160 (391)
T 1l0q_A 84 DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV--GRSP 160 (391)
T ss_dssp TSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--CSSE
T ss_pred CCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec--CCCc
Confidence 777665 5556799999999999988888754 57899999976 555 7888899999999999999888874 3568
Q ss_pred EEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc---CCCeEEEEEcCCCceEE
Q 014104 279 KTLCYNPCSRLV-FAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG---IDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 279 ~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~ 354 (430)
.+++|+|+++.+ ++++.++.|++||+++++.+..+.. ...+.+++ ++|++++|++++ .++.|++||+.+++.+.
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~-~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~ 238 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIA-VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEE-ECTTSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceE-ECCCCCEEEEEecCcCCCcEEEEECCCCeEEE
Confidence 999999999987 5778899999999999988777664 46788998 999999998888 68999999999998887
Q ss_pred EEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEE-EEeeCCCeEEEEEecCCC
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKV-VTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l-~t~~~Dg~v~vw~~~~~~ 427 (430)
.+..+. .+.+++| +++++ ++++.|+.|++||+.+++
T Consensus 239 ~~~~~~-------------------------------------~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 239 RIPVGP-------------------------------------DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEECCS-------------------------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred EEecCC-------------------------------------CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc
Confidence 776422 3567777 46665 788899999999998765
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=248.16 Aligned_cols=257 Identities=10% Similarity=0.030 Sum_probs=198.9
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccc
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVF 186 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~ 186 (430)
.-...|.+++| +|| ++||++.|++|+ |...++.+ .+| ..+..++|+|+| .++.+.+|+.+.....-
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~~~~ 81 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE------FENKLDFELAQQNGLLN 81 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC------CCCTTTTSCCCSSCSST
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC------CcceEEEEeCCCceEee
Confidence 34578999999 677 999999999999 76665544 444 667889999998 45666666654433222
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-----CeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-----PVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-----~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
..+ ...+..+++++++..+++++.||.|++||.++ ++..+. |.. .|.+++|+|+ ++|++|+.||+|++||
T Consensus 82 ~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 82 SQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp TSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred cCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 233 55567788888899999999999999999643 666677 665 4999999986 8999999999999999
Q ss_pred CCCCce-------eEEEe---cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce---eeee-ecCCCceEEEEEe
Q 014104 261 LSSDQR-------VATLR---STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS---LWET-RISPNVVYSLQHL 326 (430)
Q Consensus 261 ~~~~~~-------~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---~~~~-~~~~~~v~~l~~~ 326 (430)
+.++.. +.++. .+|...|.+++|+|+| +++++.|++|++||+..++. ..++ .+|...|.+++ |
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva-F 234 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK-I 234 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE-E
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE-E
Confidence 998753 56663 3367899999999999 88889999999999988763 2456 47888999999 8
Q ss_pred eCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--
Q 014104 327 QNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-- 404 (430)
Q Consensus 327 s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-- 404 (430)
+ |+.|++++ +++|++||+.+++......+ |...|..+++
T Consensus 235 s--g~~LASa~-~~tIkLWd~~~~~~~~~~~g------------------------------------h~~~V~~va~~~ 275 (588)
T 2j04_A 235 V--DYKVVLTC-PGYVHKIDLKNYSISSLKTG------------------------------------SLENFHIIPLNH 275 (588)
T ss_dssp E--TTEEEEEC-SSEEEEEETTTTEEEEEECS------------------------------------CCSCCCEEEETT
T ss_pred E--CCEEEEEe-CCeEEEEECCCCeEEEEEcC------------------------------------CCceEEEEEeee
Confidence 7 68899887 69999999997666333223 4456666666
Q ss_pred --cCeEEEEeeCCCeEEEEEec
Q 014104 405 --GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 405 --~~~~l~t~~~Dg~v~vw~~~ 424 (430)
++..++++++||+ ++|.++
T Consensus 276 s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 276 EKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSSCEEEEECSSCEE-EEEESS
T ss_pred CCCCCEEEEEcCCCC-EEEeec
Confidence 2456888888888 888763
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-32 Score=248.50 Aligned_cols=234 Identities=16% Similarity=0.138 Sum_probs=185.3
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc--c--cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLR--S--VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK- 224 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~--~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~- 224 (430)
...+..++|+|++++|+ ++.|+.|++||+.++. . .+..+... +..+++.+.+..+++++.||.|++||+.+++
T Consensus 11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKI-VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSC-EEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCce-EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 35788899999999999 7799999999999873 2 23333332 3445566666779999999999999999887
Q ss_pred --eeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc---eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCe
Q 014104 225 --CSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ---RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 225 --~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
....+..|...|.+++|+|+ +++++++.|+.|++||+++++ ....+...|...|.+++|+|++++|++++.|+.
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~ 169 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRK 169 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSC
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCE
Confidence 66778889999999999976 799999999999999999887 367777658889999999999999999999999
Q ss_pred EEEEeCC------------------CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce----EEEE
Q 014104 299 ASCWDLR------------------TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV----LSRC 356 (430)
Q Consensus 299 i~i~d~~------------------~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~----~~~~ 356 (430)
|++||++ .++++..+ +|...|.+++ |+|++++|++++.||.|++||+.+++. +..+
T Consensus 170 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~-~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 247 (377)
T 3dwl_C 170 AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG-FSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247 (377)
T ss_dssp EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE-ECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCE
T ss_pred EEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE-ECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEee
Confidence 9999985 35566667 8999999999 999999999999999999999998876 4444
Q ss_pred EeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEec
Q 014104 357 VMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 357 ~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.. |...|++++| ++++|++|+.|+.+ +|+..
T Consensus 248 ~~------------------------------------~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 248 KL------------------------------------SQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EC------------------------------------SSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred cC------------------------------------CCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 43 5568999998 68889998877766 66554
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-30 Score=240.86 Aligned_cols=247 Identities=10% Similarity=0.100 Sum_probs=193.1
Q ss_pred ccccceeEEEe-c-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCC---CEEE-EEeCCeEEEEEcCCC
Q 014104 110 AHSVGVDQCRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE---SKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 110 ~h~~~v~~~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~-~~~~~~i~vwd~~~~ 182 (430)
+|.+.|.+++| + ++ +|++++.||.|++||+.+++....+.....+..+.+.+.+ ..++ ++.++.|++||+.++
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 176 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG 176 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc
Confidence 59999999999 4 44 9999999999999999999999999888888889998854 4777 888999999999987
Q ss_pred ccc--ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCe-eeEEe---------------ecCCCCeEEEEecC
Q 014104 183 RSV--FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRK-CSQII---------------RMHCAPVTSLSLSE 243 (430)
Q Consensus 183 ~~~--~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~-~~~~~---------------~~~~~~i~~~~~~~ 243 (430)
+.. +..+.. ....+++.+.++. +++++.||.|++||++++. ++..+ ..|...|.+++|+|
T Consensus 177 ~~~~~~~~~~~-~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 177 SCSHILQGHRQ-EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp CCCEEECCCCS-CEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred ceeeeecCCCC-cEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 643 233333 2344566666775 8899999999999998765 44444 56889999999998
Q ss_pred C-CEEEEEeCCCeEEEEeCCCCceeEEEecCC----CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCC
Q 014104 244 D-QLIISGSSLGSIAISGLSSDQRVATLRSTD----CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPN 318 (430)
Q Consensus 244 ~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 318 (430)
+ .++++++.||.|++||+.+++....+.... ...+........+..+++++.++.|++||+.+++++..+.+|.+
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 6 799999999999999999987755443211 11222222233455677778899999999999999999999999
Q ss_pred ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 319 VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
.|.+++ |+|++++|++++.||.|++||+.+++.+.....
T Consensus 336 ~v~~~~-~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 374 (408)
T 4a11_B 336 TVDCCV-FQSNFQELYSGSRDCNILAWVPSLYEPVPDDDE 374 (408)
T ss_dssp CEEEEE-EETTTTEEEEEETTSCEEEEEECC---------
T ss_pred eEEEEE-EcCCCCEEEEECCCCeEEEEeCCCCCccCCCCc
Confidence 999999 999999999999999999999999887765543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-30 Score=246.08 Aligned_cols=246 Identities=12% Similarity=0.055 Sum_probs=186.6
Q ss_pred EEEEeccccceeEEEec--CC-eEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEeCCeEEEE
Q 014104 105 IDQWKAHSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~~~~i~vw 177 (430)
+..+.+|.+.|++++|+ ++ +|+||+.||+|++||++++........+ ..+..++|++++..|+ ++.||.|++|
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~w 236 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILL 236 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEE
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeee
Confidence 44567899999999994 44 9999999999999999876544333332 2345689999999999 8889999999
Q ss_pred EcCCCcc-cccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeE---EeecCCCCeEEEEecCC-CEEEEEe
Q 014104 178 RRNGLRS-VFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ---IIRMHCAPVTSLSLSED-QLIISGS 251 (430)
Q Consensus 178 d~~~~~~-~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~i~~~~~~~~-~~l~~~~ 251 (430)
|+++... .+..+... +..+++.+.++. +++|+.|+.|++||+++.+... ...+|...|++++|+|+ .+|++++
T Consensus 237 d~~~~~~~~~~~h~~~-v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~ 315 (435)
T 4e54_B 237 NMDGKELWNLRMHKKK-VTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD 315 (435)
T ss_dssp ESSSCBCCCSBCCSSC-EEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred ccCcceeEEEecccce-EEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence 9986542 23333333 233445555554 7899999999999998876443 33579999999999976 8999999
Q ss_pred CCCeEEEEeCCCCceeEEEecCCCC------CeEEEEEecCCCEEEEEe------------CCCeEEEEeCCCCceeeee
Q 014104 252 SLGSIAISGLSSDQRVATLRSTDCT------GIKTLCYNPCSRLVFAGT------------TAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~ 313 (430)
.||.|++||+.+++....+.. |.. .+....|+|++..++++. .++.|++||..+++.+..+
T Consensus 316 ~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l 394 (435)
T 4e54_B 316 QKSEIRVYSASQWDCPLGLIP-HPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL 394 (435)
T ss_dssp SSSCEEEEESSSSSSEEEECC-CCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE
T ss_pred CCCEEEEEECCCCccceEEec-ccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE
Confidence 999999999999988777764 321 234556777777777664 3357999999999988876
Q ss_pred e-cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 314 R-ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 314 ~-~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
. +|...|.++..|+|+|.+|++|+ |+.|+|||+++++..
T Consensus 395 ~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 395 YDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred eCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 4 67788888855999999999886 889999999988653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.9e-31 Score=248.11 Aligned_cols=255 Identities=15% Similarity=0.147 Sum_probs=190.9
Q ss_pred cCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc-------------cccCCC-----------CceeeeeEEEEcC-
Q 014104 150 LPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS-------------VFPSRE-----------GTFMKGLCMRYFD- 203 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-------------~~~~~~-----------~~~~~~~~~~~~~- 203 (430)
..+.+..++|+|++++|+ ++.||.|++||+.+++. .+..+. ...+..+++.+.+
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 346788899999999999 88899999999987652 223333 0224456666666
Q ss_pred -CceEEEecCCeEEEEECCCCeee---------------------------------------EE-eecCCCCeEEEEec
Q 014104 204 -PEAVVGCEDGTARVFDMYSRKCS---------------------------------------QI-IRMHCAPVTSLSLS 242 (430)
Q Consensus 204 -~~l~~~~~dg~i~vwd~~~~~~~---------------------------------------~~-~~~~~~~i~~~~~~ 242 (430)
..+++++.||.|++||+.+++.. .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 56999999999999998764432 12 35799999999999
Q ss_pred CC-CEEEEEeCCCeEEEEeCCC-CceeEEE------ecCCCCCeEEEEEecCC-CEEEEEeCCCeEEEEeCCCCce----
Q 014104 243 ED-QLIISGSSLGSIAISGLSS-DQRVATL------RSTDCTGIKTLCYNPCS-RLVFAGTTAGYASCWDLRTMKS---- 309 (430)
Q Consensus 243 ~~-~~l~~~~~dg~i~vwd~~~-~~~~~~~------~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---- 309 (430)
|+ +++++| .|+.|++||+++ ++.+..+ ...|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 86 788888 799999999984 4444432 12378899999999998 9999999999999999999886
Q ss_pred eeeeecCCC------------ceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC-CceEEEEEeccCcceeeeccCCceEEE
Q 014104 310 LWETRISPN------------VVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT-GEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 310 ~~~~~~~~~------------~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
+..+..|.. .|.+++ |+|++++|++++. +.|++||+++ ++++..+..|......+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~-------- 335 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVK-FSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS-------- 335 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEE-ECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH--------
T ss_pred eeEeccCCCccccccccccCceEEEEE-ECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc--------
Confidence 677888775 899999 9999999999998 9999999997 8888888776431100000
Q ss_pred eecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 377 NEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
... ...-..+..++| ++++|++|+.||.|++||+.+++.
T Consensus 336 -----~~~--------~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 336 -----LYE--------NDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp -----HHH--------TSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred -----ccc--------ccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 000 000001334666 688999999999999999988753
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=232.67 Aligned_cols=244 Identities=13% Similarity=0.056 Sum_probs=201.6
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCc----ccccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEEC-CCCe
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLR----SVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDM-YSRK 224 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~-~~~~ 224 (430)
+.+..++|+|+++.|+ ++.|+.|++|++.++. .............+++.+.+. .+++|+.||.|++||+ .+++
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 91 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS 91 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence 5678899999999988 8889999999998776 222222233455677888888 8999999999999999 7775
Q ss_pred eeEEeec--CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC---------CceeEEEecCCCCCeEEEEEecCCCEEEEE
Q 014104 225 CSQIIRM--HCAPVTSLSLSEDQLIISGSSLGSIAISGLSS---------DQRVATLRSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 225 ~~~~~~~--~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
. ..+.+ |...|.+++|+|++.+++++.|+.|++||+++ ++.+..+. +...|.+++|+|++ ++++
T Consensus 92 ~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~--l~~~ 166 (342)
T 1yfq_A 92 F-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNSSR--LIVG 166 (342)
T ss_dssp E-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECSSE--EEEE
T ss_pred e-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecCCc--EEEE
Confidence 5 67788 99999999999988999999999999999987 77666665 77899999999887 8999
Q ss_pred eCCCeEEEEeCCC-Cce--eeeeecCCCceEEEEEeeC-CCCeEEEEcCCCeEEEEEcCCC------ceEEEEEeccCcc
Q 014104 294 TTAGYASCWDLRT-MKS--LWETRISPNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQNTG------EVLSRCVMDIGSA 363 (430)
Q Consensus 294 ~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~~ 363 (430)
+.|+.|++||+++ +.. ......|...+.+++ ++| +++++++++.||.|++|+++.. +....+..|....
T Consensus 167 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~-~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (342)
T 1yfq_A 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA-LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245 (342)
T ss_dssp ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE-ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT
T ss_pred eCCCeEEEEECCccccccceeeecCCCCceeEEE-ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc
Confidence 9999999999998 543 234456778999999 999 9999999999999999999876 7777777654310
Q ss_pred eeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 364 SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 364 ~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
....|...|++++| ++++|++|+.||.|++||+.+++.
T Consensus 246 ---------------------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 246 ---------------------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp ---------------------------TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred ---------------------------cccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 01246679999999 588999999999999999987753
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-31 Score=249.60 Aligned_cols=307 Identities=11% Similarity=0.045 Sum_probs=223.9
Q ss_pred CchHHHHHHHHcccchhhcccCCEeE--------EEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeec
Q 014104 80 SSMRLHLEELAMKHHRFALEEGRIDI--------DQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL 150 (430)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 150 (430)
.+++.|+..++++++++.+..+.... +.+.||.+.|.+++| |+| .++++.+|+.+.. .+..+.+
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~-~~~~~~~ 84 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE------FENKLDFELAQQN-GLLNSQP 84 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC------CCCTTTTSCCCSS-CSSTTSC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC------CcceEEEEeCCCc-eEeecCC
Confidence 34456666777888887777755432 234799999999999 566 4555555554322 2333334
Q ss_pred CCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCC----ceeeeeEEEEcCCceEEEecCCeEEEEECCCCe-
Q 014104 151 PNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREG----TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK- 224 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~- 224 (430)
...+..++|+|+|..|+ ++.||.+++||.++.-..+. +.. .....+++++++..|++|+.||+|++||+.+++
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l 163 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSE 163 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcc
Confidence 56788899999999999 89999999999655222222 222 135678888899999999999999999998875
Q ss_pred ------eeEEe----ecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEE
Q 014104 225 ------CSQII----RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 225 ------~~~~~----~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~ 291 (430)
.+.++ .+|.+.|.+++|+|+. +++++.|++|++||+..+.. .+++...|...|.+++|+ |+.|+
T Consensus 164 ~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LA 240 (588)
T 2j04_A 164 NTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVV 240 (588)
T ss_dssp TCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEE
T ss_pred ccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEE
Confidence 25666 5677899999999988 99999999999999988773 356653477899999999 68999
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEe--eCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeecc
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHL--QNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNK 369 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~--s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s 369 (430)
+++ +++|++||+.+++......+|.+.|..++ + +|++..|++++.||+ ++|..+. +...++...++..
T Consensus 241 Sa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va-~~~s~d~~~La~a~edG~-klw~~d~------~~~spd~~l~a~~- 310 (588)
T 2j04_A 241 LTC-PGYVHKIDLKNYSISSLKTGSLENFHIIP-LNHEKESTILLMSNKTSY-KVLLEDE------LHVTADNIIAPYL- 310 (588)
T ss_dssp EEC-SSEEEEEETTTTEEEEEECSCCSCCCEEE-ETTCSSCEEEEECSSCEE-EEEESSS------EEEECCCSSHHHH-
T ss_pred EEe-CCeEEEEECCCCeEEEEEcCCCceEEEEE-eeeCCCCCEEEEEcCCCC-EEEeecc------EEECCCceEEEEc-
Confidence 887 69999999998777444448999999998 9 999999999999999 9999872 2233333322222
Q ss_pred CCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeC
Q 014104 370 VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHN 414 (430)
Q Consensus 370 ~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~ 414 (430)
|+++..|+. . +..+..+ . +...|.++++ ||+.+|+++.
T Consensus 311 -d~~v~lW~~---~-g~~l~~~-~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 311 -EKKFKKWST---I-WNEFNNY-E-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp -HHHHHHTTT---T-TTSSSSS-C-CEEEEEEEEECTTSSEEEEEEE
T ss_pred -CCEEEEEEC---C-CCceeee-c-cceEEEEEEECCCCCEEEEEEe
Confidence 555544432 1 1112211 2 2456899999 6888988874
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-30 Score=232.82 Aligned_cols=246 Identities=13% Similarity=0.100 Sum_probs=184.1
Q ss_pred EEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCC
Q 014104 136 LWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDG 213 (430)
Q Consensus 136 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg 213 (430)
+|++.+.+.+.....| ..+..++|+||++.|+++.+..+++|++++.+......... ...+.+.+.++.+ ++++.|+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~ 81 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRH-LSKVRMLHRTNYVAFVTGVKE 81 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSC-CCEEEECTTSSEEEEECSSTT
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCC-eEEEEEcCCCCEEEEEECCcc
Confidence 4666666666655554 67888999999999997777789999998876544333222 3445555555554 6778889
Q ss_pred eEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEE
Q 014104 214 TARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 292 (430)
+|++||..+++++..+. +...|.+++++++..++ + .|+.|++||+.++ +.+..+.. +...+++++ .++++
T Consensus 82 ~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~-~-~~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 82 VVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV-S-YGDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVY 152 (355)
T ss_dssp EEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEE-E-ETTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEE
T ss_pred EEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEE-E-EcCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEE
Confidence 99999999999998887 67799999998764333 3 4789999999988 66666653 445566777 56665
Q ss_pred --EeCCCeEEEEeCCCCc---------------e-eeeeecCCCceEEEEEeeCCCCeEEEEcCCCe-EEEEEcCCCceE
Q 014104 293 --GTTAGYASCWDLRTMK---------------S-LWETRISPNVVYSLQHLQNDTSTLVVGGIDGV-LRVLDQNTGEVL 353 (430)
Q Consensus 293 --~~~dg~i~i~d~~~~~---------------~-~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~-i~vwd~~~~~~~ 353 (430)
|+.||.|++||+++++ + +..+.+|.+.|.+++ |+|+|++|++|+.||+ |++||+.+++++
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~-~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR-LNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE-ECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE-ECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 6889999999999865 2 678899999999999 9999999999999998 999999999999
Q ss_pred EEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 354 SRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 354 ~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.++.. ..|...|++++| ++++|++|+.|++|++||+..+
T Consensus 232 ~~~~~----------------------------------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 232 REFRR----------------------------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEEC----------------------------------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EEEEc----------------------------------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 88862 115568999999 5889999999999999999765
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=235.43 Aligned_cols=237 Identities=12% Similarity=0.076 Sum_probs=191.1
Q ss_pred eEEEEecCCCEEE--EEeCCeEEEEEcCCCcc------cccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCC--
Q 014104 155 SLVDFDFDESKIV--GLIGTRICIWRRNGLRS------VFPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSR-- 223 (430)
Q Consensus 155 ~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~-- 223 (430)
..++++++...++ ++.+|.|.+|++..... .+..|.+. +..+++.+ .+..+++|+.||.|++||+.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~-V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAP-VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSC-EEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCC-EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 3467777766555 57799999999966432 12223322 33344544 4556999999999999999987
Q ss_pred -----eeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEe-cCCCCCeEEEEEecCCCEEEEEeC
Q 014104 224 -----KCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR-STDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 224 -----~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
+++..+.+|...|.+++|+|+ .++++++.|+.|++||+++++.+..+. ..|...|.+++|+|++++|++++.
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 196 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR 196 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec
Confidence 668889999999999999976 589999999999999999999999983 338889999999999999999999
Q ss_pred CCeEEEEeCCCCceeeee-ecCCCc-eEEEEEeeCCCCeEEEE---cCCCeEEEEEcCCCce-EEEEEeccCcceeeecc
Q 014104 296 AGYASCWDLRTMKSLWET-RISPNV-VYSLQHLQNDTSTLVVG---GIDGVLRVLDQNTGEV-LSRCVMDIGSASSSSNK 369 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~~~-~~~~~~-v~~l~~~s~~~~~l~s~---~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~s 369 (430)
|+.|++||+++++.+..+ ..|.+. +.++. |+|++.+|++| +.|+.|++||+.+++. +.....
T Consensus 197 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~----------- 264 (402)
T 2aq5_A 197 DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAV-FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL----------- 264 (402)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCSSSCCEEE-ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-----------
T ss_pred CCcEEEEeCCCCceeeeeccCCCCCcceEEE-EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-----------
Confidence 999999999999999888 688765 88888 99999999999 8999999999987654 332221
Q ss_pred CCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE-EeeCCCeEEEEEecCCCc
Q 014104 370 VSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV-TTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 370 ~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~-t~~~Dg~v~vw~~~~~~~ 428 (430)
.|...|.+++| ++++|+ +|+.||.|++|++.+++.
T Consensus 265 ------------------------~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 265 ------------------------DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp ------------------------CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred ------------------------cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 23457888888 467775 566899999999998764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=223.78 Aligned_cols=192 Identities=14% Similarity=0.221 Sum_probs=161.6
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCC--CeeeEEeecCCCCeEEEEecC---CCEEEEEeCCCeEEEEeCCCCc--eeEE
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYS--RKCSQIIRMHCAPVTSLSLSE---DQLIISGSSLGSIAISGLSSDQ--RVAT 269 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~i~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~--~~~~ 269 (430)
+++.+++..|++|+.|++|++||+.+ .+++..+.+|.++|.+++|++ +++|++|+.|++|++||+++++ .+..
T Consensus 15 ~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~ 94 (297)
T 2pm7_B 15 AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAV 94 (297)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEE
Confidence 44455556699999999999999974 467889999999999999974 4799999999999999999874 4556
Q ss_pred EecCCCCCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCCce--eeeeecCCCceEEEEEeeCC-------------CCe
Q 014104 270 LRSTDCTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTMKS--LWETRISPNVVYSLQHLQND-------------TST 332 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~s~~-------------~~~ 332 (430)
+.. |...|.+++|+|+ +.+|++++.|+.|++||++++.. ...+.+|...|.+++ |+|+ +++
T Consensus 95 ~~~-h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~-~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 95 HAV-HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-WAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp ECC-CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE-ECCCC------------CCE
T ss_pred eec-CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEe-ecCCcccccccCCCCCCcce
Confidence 665 7889999999997 88999999999999999987632 356788999999999 9886 579
Q ss_pred EEEEcCCCeEEEEEcCCCc----eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---
Q 014104 333 LVVGGIDGVLRVLDQNTGE----VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--- 405 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--- 405 (430)
|++|+.|++|++||+++++ ....+ .+|...|++++|+
T Consensus 173 l~sgs~D~~v~lwd~~~~~~~~~~~~~l------------------------------------~~H~~~V~~v~~sp~~ 216 (297)
T 2pm7_B 173 FVTGGADNLVKIWKYNSDAQTYVLESTL------------------------------------EGHSDWVRDVAWSPTV 216 (297)
T ss_dssp EEEEETTSCEEEEEEETTTTEEEEEEEE------------------------------------CCCSSCEEEEEECCCC
T ss_pred EEEEcCCCcEEEEEEcCCCceEEEEEEe------------------------------------cCCCCceEEEEECCCC
Confidence 9999999999999998766 23333 3467789999994
Q ss_pred --CeEEEEeeCCCeEEEEEecCC
Q 014104 406 --MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 406 --~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+.+|++|+.|++|+|||+..+
T Consensus 217 ~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 217 LLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp SSSEEEEEEETTSCEEEEEESST
T ss_pred CCceEEEEEECCCcEEEEEeCCC
Confidence 378999999999999999764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=235.63 Aligned_cols=258 Identities=12% Similarity=0.074 Sum_probs=198.1
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---cc--ccCCCC-----------------------------------
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SV--FPSREG----------------------------------- 191 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~--~~~~~~----------------------------------- 191 (430)
..+.+++|+++|++|+++.++.|++||+.+++ .+ +..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 35677889999998888899999999998876 21 111100
Q ss_pred ------------------ceeeeeEEEEcCCce-EEEecCCeEEEEECC--CCeeeEEee--cCCCCeEEEEecCC-CEE
Q 014104 192 ------------------TFMKGLCMRYFDPEA-VVGCEDGTARVFDMY--SRKCSQIIR--MHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 192 ------------------~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~--~~~~~~~~~--~~~~~i~~~~~~~~-~~l 247 (430)
..+..+++.+++..| ++++.||.|++||+. +++.+..+. .|...|.+++|+|+ .+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 164 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTV 164 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEE
Confidence 023445556666665 889999999999999 888888876 56789999999986 799
Q ss_pred EEEeCCCeEEEEeCCCCceeE----EEecCCCCCeEEEEEecC---CCEEEEEeCCCeEEEEeCCCCceeee-eecCCCc
Q 014104 248 ISGSSLGSIAISGLSSDQRVA----TLRSTDCTGIKTLCYNPC---SRLVFAGTTAGYASCWDLRTMKSLWE-TRISPNV 319 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~ 319 (430)
++|+.+|.|++|++.+++... .+.+ |...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|...
T Consensus 165 ~~~~~~g~v~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~ 243 (450)
T 2vdu_B 165 IIADKFGDVYSIDINSIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF 243 (450)
T ss_dssp EEEETTSEEEEEETTSCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred EEEeCCCcEEEEecCCcccccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence 999999999999998877543 5555 7889999999999 99999999999999999999988877 5689999
Q ss_pred eEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCe
Q 014104 320 VYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPI 399 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v 399 (430)
|.+++ |+ ++++|++++.|+.|++||+.+++++..+..+.....+......... .........+...|
T Consensus 244 v~~~~-~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~v 310 (450)
T 2vdu_B 244 VSSIC-CG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPP-----------RFQNENNDIIEFAV 310 (450)
T ss_dssp EEEEE-EC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---------------------CBCCCE
T ss_pred eEEEE-EC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccc-----------cccccccccceEEE
Confidence 99999 88 9999999999999999999999999988754321000000000000 00000001233578
Q ss_pred eEEEE--cCeEEEEee-CCCeEEEEEe
Q 014104 400 TCLAV--GMKKVVTTH-NSKYIRLWKF 423 (430)
Q Consensus 400 ~~v~~--~~~~l~t~~-~Dg~v~vw~~ 423 (430)
.++++ ++++|++++ .|+.|++|++
T Consensus 311 ~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 311 SKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp EEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 88888 588999888 8999999999
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-28 Score=227.59 Aligned_cols=280 Identities=14% Similarity=0.092 Sum_probs=218.5
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee-----cC-CceeEEEEecCCCEEE-EEeCCe
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-----LP-NAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
..+..+..+. .+.+++| +++ ++++++.|+.|++||+.+++....+. .+ ..+..++|++++..++ ++.++.
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~ 192 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANA 192 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTE
T ss_pred eEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCE
Confidence 3455565554 4558888 445 77788889999999999998886433 33 3566789999998888 677899
Q ss_pred EEEEEcCCCcccccC-CCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 174 ICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 174 i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
|++||+++++..... ........+++.+.+..++ +++.|+.|++||+++++.+..+..+ ..+.+++|+|+ +.++++
T Consensus 193 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 193 VHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEE
T ss_pred EEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEE
Confidence 999999987644322 1223344566776777664 5558999999999999988887754 56899999976 678887
Q ss_pred e--------CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEE-EEEeCCCeEEEEeCCCCceeeeeecCCCceE
Q 014104 251 S--------SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLV-FAGTTAGYASCWDLRTMKSLWETRISPNVVY 321 (430)
Q Consensus 251 ~--------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 321 (430)
+ .|+.|++||+.+++.+..+. +...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. +...+.
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~ 348 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPN 348 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCC
Confidence 7 58899999999998877775 45589999999999755 566899999999999988887776 567789
Q ss_pred EEEEeeCCCCeEEEEcC---------------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCc
Q 014104 322 SLQHLQNDTSTLVVGGI---------------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~ 386 (430)
+++ ++|++++|++++. ||.|++||+.+++.+..+..+
T Consensus 349 ~~~-~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--------------------------- 400 (433)
T 3bws_A 349 TIA-LSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--------------------------- 400 (433)
T ss_dssp EEE-ECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS---------------------------
T ss_pred eEE-EcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC---------------------------
Confidence 998 9999998888876 579999999999888877541
Q ss_pred ccccCCCCCCCCeeEEEE--cCeEEEEee-CCCeEEEEEecC
Q 014104 387 CIDRIPKTIRPPITCLAV--GMKKVVTTH-NSKYIRLWKFNY 425 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~--~~~~l~t~~-~Dg~v~vw~~~~ 425 (430)
..+.+++| ++++|++++ .|+.|++|+++.
T Consensus 401 ----------~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 401 ----------NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp ----------SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ----------CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 25778888 577888776 499999999863
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=228.91 Aligned_cols=228 Identities=10% Similarity=0.029 Sum_probs=159.7
Q ss_pred ecCCCEEE-EEeCCeEEEEEcCCCcc----cccCCCCce--eeeeEEEE--------cCCceEEEecCCeEEEEECCCCe
Q 014104 160 DFDESKIV-GLIGTRICIWRRNGLRS----VFPSREGTF--MKGLCMRY--------FDPEAVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 160 ~~~~~~l~-~~~~~~i~vwd~~~~~~----~~~~~~~~~--~~~~~~~~--------~~~~l~~~~~dg~i~vwd~~~~~ 224 (430)
.+++..++ ++.|++|++||.++++. .+....+|. +..+++.+ ++..|++|+.|++|++||+.++.
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~ 177 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG 177 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence 34455677 88899999999988753 222233333 33455554 34569999999999999999988
Q ss_pred eeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEe------------------------cCCCCCe
Q 014104 225 CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLR------------------------STDCTGI 278 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~------------------------~~~~~~v 278 (430)
++..+..|..+|.+++|+|+ .++++|+.|++|++||+++++...... ..|...+
T Consensus 178 ~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v 257 (393)
T 4gq1_A 178 PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSL 257 (393)
T ss_dssp EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSC
T ss_pred eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccc
Confidence 88888889999999999986 489999999999999999876543321 1255678
Q ss_pred EEEEEe-cCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEE------------------EeeC-CCCeEEEEcC
Q 014104 279 KTLCYN-PCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQ------------------HLQN-DTSTLVVGGI 338 (430)
Q Consensus 279 ~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~------------------~~s~-~~~~l~s~~~ 338 (430)
.++.|+ |+++.+++++.|+.+++||+..++....+..|...+..+. ++.+ ++.++++|+.
T Consensus 258 ~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 258 ANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp SEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETT
T ss_pred eeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECC
Confidence 899987 7999999999999999999998776666655544443332 1222 3446788889
Q ss_pred CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC
Q 014104 339 DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK 416 (430)
Q Consensus 339 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg 416 (430)
||.|++||+.+++++..+..|. .+|++++| ||++||++++||
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~------------------------------------~~V~svafspdG~~LA~as~~G 381 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLG------------------------------------MPIVDFCWHQDGSHLAIATEGS 381 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECS------------------------------------SCEEEEEECTTSSEEEEEESSE
T ss_pred CCEEEEEECCCCcEEEEecCCC------------------------------------CcEEEEEEcCCCCEEEEEeCCC
Confidence 9999999999998887776544 47889988 688999999876
Q ss_pred eEEEEEec
Q 014104 417 YIRLWKFN 424 (430)
Q Consensus 417 ~v~vw~~~ 424 (430)
+.+|++.
T Consensus 382 -v~lvrL~ 388 (393)
T 4gq1_A 382 -VLLTRLM 388 (393)
T ss_dssp -EEEEEEG
T ss_pred -eEEEEEe
Confidence 5566654
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=225.35 Aligned_cols=205 Identities=15% Similarity=0.172 Sum_probs=161.2
Q ss_pred eEEEEeccccceeEEEec-C--C-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEEEEeCCeEEE
Q 014104 104 DIDQWKAHSVGVDQCRMK-R--G-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIVGLIGTRICI 176 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~-~--~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~v 176 (430)
.+..+.+|.+.|.+++|. + + +|+||+.|++|++||+.+++ ....+.+| ..+..++|+|++.
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------------ 116 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDY------------ 116 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTT------------
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCC------------
Confidence 467899999999999993 2 4 99999999999999998864 44555544 4456677776521
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe---eeEEeecCCCCeEEEEecCC---------
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK---CSQIIRMHCAPVTSLSLSED--------- 244 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~i~~~~~~~~--------- 244 (430)
+..+++|+.||+|++||++++. ....+.+|...|.+++|+|+
T Consensus 117 --------------------------g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 117 --------------------------GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp --------------------------CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred --------------------------CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccc
Confidence 1226777777777777776542 13445567777888888764
Q ss_pred ---------CEEEEEeCCCeEEEEeCCCC---ceeEEEecCCCCCeEEEEEecCC----CEEEEEeCCCeEEEEeCCCCc
Q 014104 245 ---------QLIISGSSLGSIAISGLSSD---QRVATLRSTDCTGIKTLCYNPCS----RLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 245 ---------~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~ 308 (430)
.+|++|+.|++|++||++.+ +.+..+.+ |...|.+++|+|++ ++|++++.|++|++||+++..
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~-h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~ 249 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEA-HSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBC-CSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTT
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeeccc-CCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcc
Confidence 58999999999999999765 35666766 88899999999986 899999999999999998631
Q ss_pred ----eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 309 ----SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 309 ----~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
....+..|.+.|++++ |+|++++|++++.||.|++|+..
T Consensus 250 ~~~~~~~~~~~~~~~v~~v~-~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 250 SNTWSPKLLHKFNDVVWHVS-WSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CCCCBCCEEEECSSCEEEEE-ECTTTCCEEEEESSSCEEEEEEC
T ss_pred ccchhhhhhhcCCCcEEEEE-EcCCCCEEEEEcCCCeEEEEEEC
Confidence 2234567889999999 99999999999999999999986
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=224.68 Aligned_cols=242 Identities=12% Similarity=0.157 Sum_probs=197.0
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEE--ecCCCEEE-EEeCCeEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDF--DFDESKIV-GLIGTRICIW 177 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~-~~~~~~i~vw 177 (430)
.....+.+|.+.|.+++| +++ +|++|+.||.|++||+.+++.+....+...+..++| ++++..++ ++.|+.|++|
T Consensus 77 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vw 156 (368)
T 3mmy_A 77 TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156 (368)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEE
T ss_pred eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEE
Confidence 344788999999999999 455 999999999999999999998887777778888999 88888888 8889999999
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe--ecCCCCeEEEEecCC-----CEEEEE
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII--RMHCAPVTSLSLSED-----QLIISG 250 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~i~~~~~~~~-----~~l~~~ 250 (430)
|+.+++.+....... ...++....+.+++++.++.+.+||+......... ..+...+.++.+.++ ..++++
T Consensus 157 d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 157 DTRSSNPMMVLQLPE--RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp CSSCSSCSEEEECSS--CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred ECCCCcEEEEEecCC--CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 999877543322222 35677777888999999999999999876433222 123345556665532 239999
Q ss_pred eCCCeEEEEeCCCC---ceeEEEecCCCC------------CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q 014104 251 SSLGSIAISGLSSD---QRVATLRSTDCT------------GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 251 ~~dg~i~vwd~~~~---~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 315 (430)
+.||.|++||++.. ..+..+.. |.. .|.+++|+|++++|++|+.||.|++||+++++++..+..
T Consensus 235 ~~dg~i~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 313 (368)
T 3mmy_A 235 SIEGRVAIHYINPPNPAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ 313 (368)
T ss_dssp ETTSEEEEEESSCSCHHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred cCCCcEEEEecCCCCccccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence 99999999999987 55667765 443 699999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 316 SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
|...|.+++ |+|++++|++++.|+..+.|++-
T Consensus 314 ~~~~v~~~~-~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 314 LDQPISACC-FNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp CSSCEEEEE-ECTTSSCEEEEECCCSTTCGGGC
T ss_pred CCCCceEEE-ECCCCCeEEEEeccccccccccc
Confidence 999999999 99999999999998866555543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-27 Score=209.28 Aligned_cols=173 Identities=12% Similarity=0.003 Sum_probs=132.3
Q ss_pred CCeEEEEEcCC-Cccc--ccCCCCceeeeeEEEE---cCCceEEEecCCeEEEEECCCCeeeEEeecCC---CCeEEEEe
Q 014104 171 GTRICIWRRNG-LRSV--FPSREGTFMKGLCMRY---FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC---APVTSLSL 241 (430)
Q Consensus 171 ~~~i~vwd~~~-~~~~--~~~~~~~~~~~~~~~~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~i~~~~~ 241 (430)
|+.|++|++.. ++.+ ...+.. ...++++++ +++.|++++.|++|++||+.++++++++.+|. ..+.+++|
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 78888888843 4322 222322 234577777 45669999999999999999999999998654 36777889
Q ss_pred cCC-CEE------------EEEeCCCeEEEEeCCCCceeEEEe----cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeC
Q 014104 242 SED-QLI------------ISGSSLGSIAISGLSSDQRVATLR----STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDL 304 (430)
Q Consensus 242 ~~~-~~l------------~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~ 304 (430)
+|+ .++ ++|+.|++|++||..+++.+..+. ..|...+.+..+ ++.++++|+.|++|+|||+
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEEC
Confidence 976 443 678899999999999999877652 235545544444 4889999999999999999
Q ss_pred CCCceeeeeecCCCceE-EEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 305 RTMKSLWETRISPNVVY-SLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 305 ~~~~~~~~~~~~~~~v~-~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
.+++++.++.+|...+. +++ |+|||++|++|+.|++|+|||+
T Consensus 313 ~tGk~l~tL~gH~~~vvs~va-fSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTALLPPVSDQHWSFVK-WSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEEECCC--CCCCEEE-ECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEecCCCCCeEEEEE-ECCCCCEEEEEECCCcEEEecC
Confidence 99999999999987665 577 9999999999999999999995
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=215.32 Aligned_cols=226 Identities=15% Similarity=0.141 Sum_probs=171.0
Q ss_pred EeEEEEeccccceeEEEec---CC-eEEEEeCCCeEEEEecCCC---------eeEEeeecC-CceeEEEEecC--CCEE
Q 014104 103 IDIDQWKAHSVGVDQCRMK---RG-LILTGVGDKVMRLWSLEGY---------KCVEEYSLP-NAASLVDFDFD--ESKI 166 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~~---~~-~l~s~~~dg~i~iwd~~~~---------~~~~~~~~~-~~~~~~~~~~~--~~~l 166 (430)
..+..+.+|.+.|.+++|. ++ +|++|+.||.|++||+.++ +.+..+..+ ..+..++|+|+ +..+
T Consensus 48 ~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l 127 (351)
T 3f3f_A 48 ELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127 (351)
T ss_dssp EEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred eecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEE
Confidence 3567788999999999994 35 9999999999999999886 445566554 45666777777 6665
Q ss_pred E-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC--
Q 014104 167 V-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-- 243 (430)
Q Consensus 167 ~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-- 243 (430)
+ ++.|+.|++||+.+++........ ..+.... .....|...+.+++|+|
T Consensus 128 ~~~~~dg~v~iwd~~~~~~~~~~~~~---------------------~~~~~~~-------~~~~~~~~~~~~~~~~p~~ 179 (351)
T 3f3f_A 128 ACLGNDGILRLYDALEPSDLRSWTLT---------------------SEMKVLS-------IPPANHLQSDFCLSWCPSR 179 (351)
T ss_dssp EEEETTCEEEEEECSSTTCTTCCEEE---------------------EEEESCS-------CCCSSCSCCCEEEEECCCS
T ss_pred EEecCCCcEEEecCCChHHhcccccc---------------------ccccccc-------cccCCcccceeEEEeccCC
Confidence 5 555555666655544322110000 0000000 01125778899999997
Q ss_pred --CCEEEEEeCCCeEEEEeCCCCce--eEEEecCCCCCeEEEEEecCC----CEEEEEeCCCeEEEEeCCCC--------
Q 014104 244 --DQLIISGSSLGSIAISGLSSDQR--VATLRSTDCTGIKTLCYNPCS----RLVFAGTTAGYASCWDLRTM-------- 307 (430)
Q Consensus 244 --~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~-------- 307 (430)
+..+++++.++.+.+|+...++. +..+.+ |...|++++|+|++ ++|++|+.||.|++||++++
T Consensus 180 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 258 (351)
T 3f3f_A 180 FSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPG-HKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEE 258 (351)
T ss_dssp SSCCEEEEEETTEEEEEEECTTSCEEEEEECCC-CCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------
T ss_pred CCCcEEEEecCCCcEEEEccCCCceeeeeecCC-CCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCC
Confidence 47999999999999998887765 556665 88899999999998 89999999999999999874
Q ss_pred --------------------------------------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 308 --------------------------------------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 308 --------------------------------------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+.+..+.+|...|++++ |+|++++|++++.||.|++||+.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~s~~~~~l~s~~~dg~v~iw~~~~ 337 (351)
T 3f3f_A 259 SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS-WNLTGTILSSAGDDGKVRLWKATY 337 (351)
T ss_dssp --------------------------------CCSEEEEEEEEECTTSSCEEEEE-ECSSSCCEEEEETTSCEEEEEECT
T ss_pred cccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE-EcCCCCEEEEecCCCcEEEEecCc
Confidence 56677888999999999 999999999999999999999998
Q ss_pred CceEEEEEe
Q 014104 350 GEVLSRCVM 358 (430)
Q Consensus 350 ~~~~~~~~~ 358 (430)
++.+..+..
T Consensus 338 ~~~~~~~~~ 346 (351)
T 3f3f_A 338 SNEFKCMSV 346 (351)
T ss_dssp TSCEEEEEE
T ss_pred Ccchhheee
Confidence 876666543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=219.09 Aligned_cols=192 Identities=14% Similarity=0.188 Sum_probs=161.1
Q ss_pred cCCceEEEecCCeEEEEECC--CCeeeEEeecCCCCeEEEEecC---CCEEEEEeCCCeEEEEeCCCCc--eeEEEecCC
Q 014104 202 FDPEAVVGCEDGTARVFDMY--SRKCSQIIRMHCAPVTSLSLSE---DQLIISGSSLGSIAISGLSSDQ--RVATLRSTD 274 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~~~i~~~~~~~---~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~ 274 (430)
++..+++|+.||.|++||+. +++.+..+.+|.+.|++++|++ ++++++|+.||.|++||+.+++ .+..+.. |
T Consensus 22 ~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~ 100 (379)
T 3jrp_A 22 YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAV-H 100 (379)
T ss_dssp SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECC-C
T ss_pred CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecC-C
Confidence 34447888889999999987 5567788889999999999973 4899999999999999999987 6666665 7
Q ss_pred CCCeEEEEEecC--CCEEEEEeCCCeEEEEeCCCCc--eeeeeecCCCceEEEEEeeC-------------CCCeEEEEc
Q 014104 275 CTGIKTLCYNPC--SRLVFAGTTAGYASCWDLRTMK--SLWETRISPNVVYSLQHLQN-------------DTSTLVVGG 337 (430)
Q Consensus 275 ~~~v~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~s~-------------~~~~l~s~~ 337 (430)
...|.+++|+|+ +++|++++.|+.|++||++++. ....+..|...|.+++ |+| ++.+|++++
T Consensus 101 ~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (379)
T 3jrp_A 101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS-WAPATIEEDGEHNGTKESRKFVTGG 179 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEE-ECCCC----------CTTCEEEEEE
T ss_pred CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEE-EcCccccccccccCCCCCCEEEEEe
Confidence 889999999999 9999999999999999999873 3445678999999999 998 699999999
Q ss_pred CCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c---CeEEEEe
Q 014104 338 IDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G---MKKVVTT 412 (430)
Q Consensus 338 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~---~~~l~t~ 412 (430)
.||.|++||++++.....+... ..+|...|++++| + +++|+++
T Consensus 180 ~dg~i~i~d~~~~~~~~~~~~~--------------------------------~~~h~~~v~~~~~sp~~~~~~~l~s~ 227 (379)
T 3jrp_A 180 ADNLVKIWKYNSDAQTYVLEST--------------------------------LEGHSDWVRDVAWSPTVLLRSYLASV 227 (379)
T ss_dssp TTSCEEEEEEETTTTEEEEEEE--------------------------------ECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred CCCeEEEEEecCCCcceeeEEE--------------------------------EecccCcEeEEEECCCCCCCCeEEEE
Confidence 9999999999876543322210 1346778999999 4 7899999
Q ss_pred eCCCeEEEEEecCCC
Q 014104 413 HNSKYIRLWKFNYSD 427 (430)
Q Consensus 413 ~~Dg~v~vw~~~~~~ 427 (430)
+.||.|++||+.+++
T Consensus 228 ~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 228 SQDRTCIIWTQDNEQ 242 (379)
T ss_dssp ETTSCEEEEEESSTT
T ss_pred eCCCEEEEEeCCCCC
Confidence 999999999998764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-26 Score=218.20 Aligned_cols=302 Identities=10% Similarity=0.030 Sum_probs=226.8
Q ss_pred cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEc--CCCcccccCCCCceeee
Q 014104 121 KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRR--NGLRSVFPSREGTFMKG 196 (430)
Q Consensus 121 ~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~--~~~~~~~~~~~~~~~~~ 196 (430)
+++ .+++++.|++|.+||..+++++.++..+..+..++|+|++++++ ++.++.|.+||+ .+++.+.....+.....
T Consensus 147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~ 226 (543)
T 1nir_A 147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARS 226 (543)
T ss_dssp GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEE
T ss_pred CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcce
Confidence 455 78888999999999999999999998655577899999999998 888999999999 67664433334444556
Q ss_pred eEEEE----cCCceEEEe-cCCeEEEEECCCCeeeEEeec----------CCC-CeEEEEecCC--CEEEEEeCCCeEEE
Q 014104 197 LCMRY----FDPEAVVGC-EDGTARVFDMYSRKCSQIIRM----------HCA-PVTSLSLSED--QLIISGSSLGSIAI 258 (430)
Q Consensus 197 ~~~~~----~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~----------~~~-~i~~~~~~~~--~~l~~~~~dg~i~v 258 (430)
+++++ ++..+++++ .+++|.+||..+++++..+.. |.. .+..+.++++ .++++...++.|.+
T Consensus 227 va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~v 306 (543)
T 1nir_A 227 VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLL 306 (543)
T ss_dssp EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEE
Confidence 67777 777788877 489999999999999888764 223 7889999974 56777888999999
Q ss_pred EeCCCCceeE--EEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeec----CCCceEEEEEeeCC-C
Q 014104 259 SGLSSDQRVA--TLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRI----SPNVVYSLQHLQND-T 330 (430)
Q Consensus 259 wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~s~~-~ 330 (430)
||+.+.+.+. .+. +...+..+.|+|+|++++++ ..+++|.+||+.+++++..+.. |.+.... +++|+ +
T Consensus 307 vd~~~~~~l~~~~i~--~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~--~~~p~~g 382 (543)
T 1nir_A 307 VNYKDIDNLTVTSIG--AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGAN--FVHPKYG 382 (543)
T ss_dssp EECTTSSSCEEEEEE--CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEE--EEETTTE
T ss_pred EEecCCCcceeEEec--cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcc--cCCCCCc
Confidence 9998876554 443 55678899999999987655 4588999999999998887774 5443333 25677 6
Q ss_pred CeEEEEc-CCCeEEEEEcCC-------CceEEEEEeccCcceeeeccCCce-----------------EEEeecccccCC
Q 014104 331 STLVVGG-IDGVLRVLDQNT-------GEVLSRCVMDIGSASSSSNKVSGV-----------------IERNEGRRLSAG 385 (430)
Q Consensus 331 ~~l~s~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~s~d~~-----------------v~~~~~~~~~~~ 385 (430)
..++++. .|++|.+||+.+ .++++++..+......+.+++||. |.+++.......
T Consensus 383 ~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 383 PVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred cEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 6667775 689999999998 899999998877666666666654 333333322211
Q ss_pred cccccC-------CCCCCCCeeEEEE--cCeEEEEe-----eCCCeEEEEEecCCCc
Q 014104 386 CCIDRI-------PKTIRPPITCLAV--GMKKVVTT-----HNSKYIRLWKFNYSDK 428 (430)
Q Consensus 386 ~~~~~~-------~~~h~~~v~~v~~--~~~~l~t~-----~~Dg~v~vw~~~~~~~ 428 (430)
. ..+ ...+...+..++| +|+.+..+ +.|+.|.|||.++++.
T Consensus 463 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 463 Y--QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp C--EEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred e--EEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 0 111 1245678889999 58776654 2589999999998763
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-27 Score=212.89 Aligned_cols=207 Identities=11% Similarity=0.018 Sum_probs=152.7
Q ss_pred ccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC
Q 014104 112 SVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 112 ~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~ 191 (430)
.+.|.++.+.+. +++|+.|++|++|+.... +.+|+..+++.+.....+
T Consensus 76 ~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 76 TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQ-------------------------------ITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EECCCTTCCCCS-EEEECSTTEEEEEETTTE-------------------------------EEEEETTTCCEEEEEECC
T ss_pred cCCceeeeeCCc-eEEecCCCeEEEEEccCc-------------------------------eEEeecCCcceeEEeecC
Confidence 356666777444 999999999999987641 222333333211111101
Q ss_pred --ceeeeeEEEE--cCCceEEEecCCeEEEEECCCCeeeEEee-cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc
Q 014104 192 --TFMKGLCMRY--FDPEAVVGCEDGTARVFDMYSRKCSQIIR-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 192 --~~~~~~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~ 265 (430)
..+..+++.+ .+..+++++.||+|++||+++++.+.... .|...|.+++|+|+ .++++|+.||.|++||+++++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 1122333444 44558999999999999999998876664 34558999999986 899999999999999999999
Q ss_pred ee-EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec---CCCceE--EEEEeeCCCCeEEEEcC-
Q 014104 266 RV-ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI---SPNVVY--SLQHLQNDTSTLVVGGI- 338 (430)
Q Consensus 266 ~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~v~--~l~~~s~~~~~l~s~~~- 338 (430)
.+ ..+...|..+|++++|+|+|.+|++++. +.|++||+++++.+..+.. |...+. +++ |+|+|++|++++.
T Consensus 204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~l~~~s~~ 281 (343)
T 3lrv_A 204 QASSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD-IDDSGKNMIAYSNE 281 (343)
T ss_dssp SCCEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEE-ECTTSSEEEEEETT
T ss_pred CCccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEE-ECCCCCEEEEecCC
Confidence 87 7777657889999999999999999994 5999999999877655543 333333 587 9999999999988
Q ss_pred CCeEEEEEcCCCce
Q 014104 339 DGVLRVLDQNTGEV 352 (430)
Q Consensus 339 dg~i~vwd~~~~~~ 352 (430)
|+.|++|++..+..
T Consensus 282 d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 282 SNSLTIYKFDKKTK 295 (343)
T ss_dssp TTEEEEEEECTTTC
T ss_pred CCcEEEEEEccccc
Confidence 99999999976543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=218.81 Aligned_cols=234 Identities=14% Similarity=0.085 Sum_probs=159.2
Q ss_pred cccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEE-----eeecC-CceeEEEEec--------CCCEEE-EEeCCe
Q 014104 111 HSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVE-----EYSLP-NAASLVDFDF--------DESKIV-GLIGTR 173 (430)
Q Consensus 111 h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~-----~~~~~-~~~~~~~~~~--------~~~~l~-~~~~~~ 173 (430)
|...+....++ ++ +|++|+.|++|++||..+++... .+.+| +.+..++|+| |++.|+ ++.|++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp ---------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred cCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 33333334443 33 89999999999999999886543 23444 5678899997 788888 889999
Q ss_pred EEEEEcCCCccc--ccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEE----------------------
Q 014104 174 ICIWRRNGLRSV--FPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQI---------------------- 228 (430)
Q Consensus 174 i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~---------------------- 228 (430)
|++||+.++... ...+... ...+++.+.++ .+++++.||+|++||+++++....
T Consensus 168 v~~Wd~~~~~~~~~~~~~~~~-v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 246 (393)
T 4gq1_A 168 LIIWRLTDEGPILAGYPLSSP-GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVN 246 (393)
T ss_dssp EEEEEEETTEEEEEEEECSSC-EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC-
T ss_pred EEEEECCCCceeeeecCCCCC-cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccccee
Confidence 999999876543 3334333 33456666554 499999999999999988764322
Q ss_pred ---eecCCCCeEEEEec-CC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEE------------------EEec
Q 014104 229 ---IRMHCAPVTSLSLS-ED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTL------------------CYNP 285 (430)
Q Consensus 229 ---~~~~~~~i~~~~~~-~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~------------------~~~~ 285 (430)
..+|...+.++.|. ++ ..+++++.|+++++||+.+++....+.. +...+..+ .++|
T Consensus 247 ~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (393)
T 4gq1_A 247 TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD-STMKLGPKNLLPNVQGISLFPSLLGACPHP 325 (393)
T ss_dssp -----CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECS
T ss_pred eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee-ecCccccEEEccccccccccCcceeEEEcc
Confidence 23567788899987 54 8999999999999999998776665544 33333322 3333
Q ss_pred --CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 286 --CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 286 --~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
++.++++|+.||.|++||+.+++.+..+..|...|.+++ |+|+|++||+++.+| +.+|.+.
T Consensus 326 ~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~sva-fspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 326 RYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFC-WHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEE-ECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEE-EcCCCCEEEEEeCCC-eEEEEEe
Confidence 334667888999999999999999888889999999999 999999999998766 6666543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=210.33 Aligned_cols=236 Identities=14% Similarity=0.150 Sum_probs=195.5
Q ss_pred EeccccceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EE-eCCeEEEEEcCCC
Q 014104 108 WKAHSVGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GL-IGTRICIWRRNGL 182 (430)
Q Consensus 108 l~~h~~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~ 182 (430)
+.+|.+.|.+++++ ++ ++++++.|+.|++||+.+++.+..+..+ ..+..++|+++++.++ ++ .++.|++||+.++
T Consensus 165 ~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~ 244 (433)
T 3bws_A 165 YKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK 244 (433)
T ss_dssp HHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC
Confidence 45788999999994 55 8899999999999999999998888765 4677799999999886 44 6899999999988
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEe--------cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-EEEEEeC
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGC--------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSS 252 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~ 252 (430)
+.............+++.+.+..+++++ .||.|++||+.+++.+..+. |...+.+++|+|+ + ++++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~ 323 (433)
T 3bws_A 245 LEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMC 323 (433)
T ss_dssp EEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETT
T ss_pred cEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecC
Confidence 7654443344445566666677788877 48899999999998877663 5668899999976 4 5567789
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---------------CCeEEEEeCCCCceeeeeecCC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---------------AGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
|+.|++||+.+++.+..+. +...+.+++|+|+|+++++++. ||.|++||+.+++.+..+..+
T Consensus 324 ~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~- 400 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG- 400 (433)
T ss_dssp TTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-
T ss_pred CCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-
Confidence 9999999999999888886 6678999999999999988876 579999999999988888764
Q ss_pred CceEEEEEeeCCCCeEEEEcC-CCeEEEEEcC
Q 014104 318 NVVYSLQHLQNDTSTLVVGGI-DGVLRVLDQN 348 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~-dg~i~vwd~~ 348 (430)
..+.+++ |+|+|++|++++. |+.|++|+++
T Consensus 401 ~~~~~~~-~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 401 NQPTGLD-VSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp SSEEEEE-ECTTSCEEEEEETTTTEEEEEEET
T ss_pred CCCceEE-EcCCCCEEEEEECCCCeEEEEEec
Confidence 5789998 9999999988764 9999999986
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-26 Score=211.77 Aligned_cols=208 Identities=14% Similarity=0.179 Sum_probs=168.8
Q ss_pred CEeEEEEeccccceeEEEec-CC--eEEEEeCCCeEEEEecCCCee-------EEeeecC-CceeEEEEecCCCEEEEEe
Q 014104 102 RIDIDQWKAHSVGVDQCRMK-RG--LILTGVGDKVMRLWSLEGYKC-------VEEYSLP-NAASLVDFDFDESKIVGLI 170 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~-~~--~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~-~~~~~~~~~~~~~~l~~~~ 170 (430)
...+..+.+|.+.|.+++|+ ++ +|++|+.||.|++||+.++.. ...+..+ ..+..++|+|++
T Consensus 171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~------- 243 (430)
T 2xyi_A 171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH------- 243 (430)
T ss_dssp CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-------
T ss_pred CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-------
Confidence 34567888999999999994 33 899999999999999987422 1222222 233334444421
Q ss_pred CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCC---eeeEEeecCCCCeEEEEecCC--C
Q 014104 171 GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSR---KCSQIIRMHCAPVTSLSLSED--Q 245 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~~~~i~~~~~~~~--~ 245 (430)
+..+++++.||.|++||++++ +.+..+..|...|++++|+|+ .
T Consensus 244 --------------------------------~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 291 (430)
T 2xyi_A 244 --------------------------------ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291 (430)
T ss_dssp --------------------------------TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTT
T ss_pred --------------------------------CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCC
Confidence 222788899999999999877 577788889999999999985 3
Q ss_pred EEEEEeCCCeEEEEeCCC-CceeEEEecCCCCCeEEEEEecCCC-EEEEEeCCCeEEEEeCCC--------------Cce
Q 014104 246 LIISGSSLGSIAISGLSS-DQRVATLRSTDCTGIKTLCYNPCSR-LVFAGTTAGYASCWDLRT--------------MKS 309 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~--------------~~~ 309 (430)
++++|+.||.|++||+++ ++.+..+.. |...|.+++|+|+++ +|++++.|+.|++||+.. .+.
T Consensus 292 ~l~tg~~dg~v~vwd~~~~~~~~~~~~~-h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 370 (430)
T 2xyi_A 292 ILATGSADKTVALWDLRNLKLKLHSFES-HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370 (430)
T ss_dssp EEEEEETTSEEEEEETTCTTSCSEEEEC-CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTE
T ss_pred EEEEEeCCCeEEEEeCCCCCCCeEEeec-CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcce
Confidence 799999999999999998 566778876 888999999999985 789999999999999987 356
Q ss_pred eeeeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCCC
Q 014104 310 LWETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~~ 350 (430)
+..+.+|...|.+++ |+|+++ +|++++.||.|++|++...
T Consensus 371 ~~~~~~h~~~v~~~~-~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 371 LFIHGGHTAKISDFS-WNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp EEECCCCSSCEEEEE-ECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEcCCCCCCceEEE-ECCCCCCEEEEEECCCCEEEeEcccc
Confidence 677888999999999 999999 8999999999999998743
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7e-26 Score=227.12 Aligned_cols=206 Identities=17% Similarity=0.229 Sum_probs=170.9
Q ss_pred EeEEEEeccccceeEEEe-cC--C-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecC--CCEEEEEeCCe
Q 014104 103 IDIDQWKAHSVGVDQCRM-KR--G-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFD--ESKIVGLIGTR 173 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~--~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~~ 173 (430)
..+..+.+|.++|++++| ++ + +|++|+.||.|++||+.+++ .+..+..+ ..+..++|+|+ +..
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~-------- 115 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPL-------- 115 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSE--------
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCE--------
Confidence 456788999999999999 44 5 99999999999999999886 45555544 44555666665 433
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecC--------
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSE-------- 243 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~-------- 243 (430)
+++|+.||.|++||++++. ....+.+|...|.+++|+|
T Consensus 116 --------------------------------l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 116 --------------------------------LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp --------------------------------EEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred --------------------------------EEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence 7888888889999887763 3456678999999999998
Q ss_pred ------CCEEEEEeCCCeEEEEeCCCC----ceeEEEecCCCCCeEEEEEecC---CCEEEEEeCCCeEEEEeCCCCc--
Q 014104 244 ------DQLIISGSSLGSIAISGLSSD----QRVATLRSTDCTGIKTLCYNPC---SRLVFAGTTAGYASCWDLRTMK-- 308 (430)
Q Consensus 244 ------~~~l~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~-- 308 (430)
+..+++|+.||.|++||++++ .....+.+ |...|++++|+|+ +++|++|+.||.|++||+++++
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG-HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC-CSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC-CCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 478999999999999999877 44556665 8889999999999 8999999999999999999864
Q ss_pred ---eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC
Q 014104 309 ---SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG 350 (430)
Q Consensus 309 ---~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~ 350 (430)
.+.....|.+.|++++ |+|+++++++++.||.|++||+.++
T Consensus 243 ~~~~~~~~~~~~~~v~~l~-~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRAS-WSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEE-ECTTTCCEEEECSSSCEECCBCCSS
T ss_pred ceeEEeccCCCCCceEEEE-EcCCCCEEEEEcCCCEEEEEecCCC
Confidence 3344556888999999 9999999999999999999999854
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-24 Score=198.90 Aligned_cols=272 Identities=10% Similarity=0.017 Sum_probs=195.9
Q ss_pred cccceeEEEe-cCC--eEEEEe----CCC----eEEEEec--CCCeeE--EeeecCC-ceeEEEEec-------------
Q 014104 111 HSVGVDQCRM-KRG--LILTGV----GDK----VMRLWSL--EGYKCV--EEYSLPN-AASLVDFDF------------- 161 (430)
Q Consensus 111 h~~~v~~~~~-~~~--~l~s~~----~dg----~i~iwd~--~~~~~~--~~~~~~~-~~~~~~~~~------------- 161 (430)
+...+....| +.+ ++++|+ .|| +|++||+ .+++.+ ..+.++. .+..+++.+
T Consensus 61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 3346666666 444 777886 467 9999999 888877 3455542 233344443
Q ss_pred -CCCEEE-EEeC------CeEEEEEcCCCcc-cccCCCCceeeeeEEEEcCCceEEEecCC---eEEEEECCCCeeeEEe
Q 014104 162 -DESKIV-GLIG------TRICIWRRNGLRS-VFPSREGTFMKGLCMRYFDPEAVVGCEDG---TARVFDMYSRKCSQII 229 (430)
Q Consensus 162 -~~~~l~-~~~~------~~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~ 229 (430)
.+..++ ++.+ +.|++||+++... .+..+.. .....++++++..+++++.++ .|++||+.+++.. .+
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~-~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l 218 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QV 218 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EE
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCC-cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Ee
Confidence 155555 5554 7999999986543 2333333 345567777888899998875 9999999998775 56
Q ss_pred ecCCCCeEEEEecCC-CEEE-EEeCCC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CC--eEEEE
Q 014104 230 RMHCAPVTSLSLSED-QLII-SGSSLG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AG--YASCW 302 (430)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~-~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~ 302 (430)
..|.+.+.+++|+|+ +.|+ +++.++ .|++||+.+++. ..+.. +...+.+++|+|+|+.|++++. ++ .|++|
T Consensus 219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~-~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~ 296 (415)
T 2hqs_A 219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 296 (415)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC-CSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC-CCCcccceEECCCCCEEEEEECCCCCcEEEEE
Confidence 678889999999987 6566 666665 499999998876 45554 6678999999999999988776 44 68888
Q ss_pred eCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC---CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeec
Q 014104 303 DLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID---GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEG 379 (430)
Q Consensus 303 d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~ 379 (430)
|+.+++. ..+..+...+.+++ |+|+|++|++++.+ ..|++||+.+++.. .+..
T Consensus 297 d~~~~~~-~~l~~~~~~~~~~~-~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~--------------------- 352 (415)
T 2hqs_A 297 NINGGAP-QRITWEGSQNQDAD-VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSS--------------------- 352 (415)
T ss_dssp ETTSSCC-EECCCSSSEEEEEE-ECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCC---------------------
T ss_pred ECCCCCE-EEEecCCCcccCeE-ECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecC---------------------
Confidence 9987764 34555667888898 99999999988764 68999999987763 2322
Q ss_pred ccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCC---eEEEEEecCC
Q 014104 380 RRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSK---YIRLWKFNYS 426 (430)
Q Consensus 380 ~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg---~v~vw~~~~~ 426 (430)
| ..+.+++| ||++|++++.|+ .|.+||++.+
T Consensus 353 ---------------~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 353 ---------------T-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp ---------------S-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred ---------------C-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 1 15666677 577787777766 7888887654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-23 Score=190.66 Aligned_cols=260 Identities=10% Similarity=0.003 Sum_probs=197.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCC---ceeEEEEecCCCEEE-E-EeCCeEEEEEcCCCcccccCCCCc------
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV-G-LIGTRICIWRRNGLRSVFPSREGT------ 192 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~~~~~~~~~~~------ 192 (430)
++++++.++.|.+||+.+++.+..+..+. .+..++++|+++.++ + ..++.|.+||+.+++.+.....+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 78999999999999999999999888765 577899999998776 3 346899999999877543221111
Q ss_pred eeeeeEEEEcCCceEEEe------------cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEE
Q 014104 193 FMKGLCMRYFDPEAVVGC------------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAIS 259 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vw 259 (430)
....+.+.+++..+++++ .++.|.+||+.+++.+..+.. ...+.+++|+|+ +.++++ ++.|.+|
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 233456666777777775 579999999999988877764 456788999976 666666 6899999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-C-----------------------eEEEEeCCCCcee-eeee
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-G-----------------------YASCWDLRTMKSL-WETR 314 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g-----------------------~i~i~d~~~~~~~-~~~~ 314 (430)
|+.+++....+..... ...+.|+|+++.++..+.. + .|.+||+.+++.. ..+.
T Consensus 160 d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp ETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred ECCCCcEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 9999998887765221 1123789999876654432 2 4789999988764 2344
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCC
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKT 394 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~ 394 (430)
.+...+.+++ ++|++++++++ ++.|++||+.+++.+..+..+
T Consensus 238 ~~~~~~~~~~-~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----------------------------------- 279 (337)
T 1pby_B 238 IMDVFYFSTA-VNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP----------------------------------- 279 (337)
T ss_dssp ECSSCEEEEE-ECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-----------------------------------
T ss_pred CCCCceeeEE-ECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-----------------------------------
Confidence 5556788898 99999999888 799999999999888776532
Q ss_pred CCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 395 IRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 395 h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+.+++| ++++|++++.|+.|++||+.+++.
T Consensus 280 --~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~ 313 (337)
T 1pby_B 280 --HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp --SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred --CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcE
Confidence 13456677 577888888999999999988763
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=195.41 Aligned_cols=257 Identities=12% Similarity=0.040 Sum_probs=189.4
Q ss_pred EEEeccccceeEEEec----------------CCeEEEEeCC------CeEEEEecCCCeeEEeee-cCCceeEEEEecC
Q 014104 106 DQWKAHSVGVDQCRMK----------------RGLILTGVGD------KVMRLWSLEGYKCVEEYS-LPNAASLVDFDFD 162 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~----------------~~~l~s~~~d------g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~ 162 (430)
..+.+|...+..+++. ++.++.++.+ +.|++||+.++. ...+. +...+..++|+|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spd 189 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPD 189 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCC
Confidence 4588888888877663 4466666654 799999998644 44444 4467788999999
Q ss_pred CCEEE-EEeCC---eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCe--EEEEECCCCeeeEEeecCCCC
Q 014104 163 ESKIV-GLIGT---RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGT--ARVFDMYSRKCSQIIRMHCAP 235 (430)
Q Consensus 163 ~~~l~-~~~~~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~--i~vwd~~~~~~~~~~~~~~~~ 235 (430)
++.|+ ++.++ .|++||+++++..............++++++..|+ +++.++. |++||+.+++. ..+..|...
T Consensus 190 g~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~ 268 (415)
T 2hqs_A 190 GSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN 268 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC
T ss_pred CCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc
Confidence 99999 66664 89999999887532222222345567777777766 6666554 99999988776 567778889
Q ss_pred eEEEEecCC-CEEEEEeC-CC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC---CeEEEEeCCCCc
Q 014104 236 VTSLSLSED-QLIISGSS-LG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---GYASCWDLRTMK 308 (430)
Q Consensus 236 i~~~~~~~~-~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~ 308 (430)
+.+++|+|+ +.|++++. ++ .|.+||+.+++.. .+.. +...+.+++|+|+|++|++++.+ ..|++||+.+++
T Consensus 269 ~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~-~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 269 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW-EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC-SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec-CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 999999987 67777775 44 7888899887643 3433 55688999999999999987764 589999999887
Q ss_pred eeeeeecCCCceEEEEEeeCCCCeEEEEcCCC---eEEEEEcCCCceEEEEEeccCcceeeeccC
Q 014104 309 SLWETRISPNVVYSLQHLQNDTSTLVVGGIDG---VLRVLDQNTGEVLSRCVMDIGSASSSSNKV 370 (430)
Q Consensus 309 ~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~ 370 (430)
.. .+..+. .+.+++ |+|+|++|++++.++ .|++||+. +.....+..+.+.+...++++
T Consensus 347 ~~-~l~~~~-~~~~~~-~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~ 407 (415)
T 2hqs_A 347 VQ-VLSSTF-LDETPS-LAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 407 (415)
T ss_dssp EE-ECCCSS-SCEEEE-ECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECC
T ss_pred EE-EecCCC-CcCCeE-EcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccc
Confidence 64 455554 788998 999999999888776 89999987 566677766555443333333
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-22 Score=180.39 Aligned_cols=269 Identities=13% Similarity=0.081 Sum_probs=191.6
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEe-CCeEEEEEcCCCcc-cccCCCCceeee-eEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLI-GTRICIWRRNGLRS-VFPSREGTFMKG-LCM 199 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~i~vwd~~~~~~-~~~~~~~~~~~~-~~~ 199 (430)
.+++++.++.|.+||..+++.+..+..+.....++|+|+++.++ ++. ++.|.+||+++++. ......+..... +++
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDI 91 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEE
T ss_pred EEEEecCCCeEEEEeCcccceeeeEEccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEE
Confidence 67888899999999999999988887654444899999999776 444 78999999998774 322222222233 667
Q ss_pred EEcCCceEEEecCC---eEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-EEEEEeCCCe-EEEEeCCCCcee-----E
Q 014104 200 RYFDPEAVVGCEDG---TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGS-IAISGLSSDQRV-----A 268 (430)
Q Consensus 200 ~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~-i~vwd~~~~~~~-----~ 268 (430)
.+++..++++..++ .|.+||+.+++.+..+.. .....+++|+|+ + ++++...++. |.+|++.....+ .
T Consensus 92 s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~ 170 (331)
T 3u4y_A 92 TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQE 170 (331)
T ss_dssp CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEE
T ss_pred CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCc
Confidence 77777777555553 999999999998888764 445689999986 4 4555566678 999998754433 2
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCce---eeeeecCCCceEEEEEeeCCCCeEEEEc-CCCeEE
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKS---LWETRISPNVVYSLQHLQNDTSTLVVGG-IDGVLR 343 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~---~~~~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~ 343 (430)
.+. ....+..++|+|+|++++++ ..++.|.+||+.+++. +..+..+ ..+..++ |+|+|++|++++ .++.|.
T Consensus 171 ~~~--~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~-~spdg~~l~v~~~~~~~i~ 246 (331)
T 3u4y_A 171 FIS--GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV-VSRDGSTVYVLTESTVDVF 246 (331)
T ss_dssp EEC--SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE-ECTTSSEEEEECSSEEEEE
T ss_pred ccc--CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE-ECCCCCEEEEEEcCCCEEE
Confidence 222 34568999999999966554 4689999999999888 7666654 5677888 999999776655 578899
Q ss_pred EEEcCCCce--EEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE-EeeCCCeE
Q 014104 344 VLDQNTGEV--LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV-TTHNSKYI 418 (430)
Q Consensus 344 vwd~~~~~~--~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~-t~~~Dg~v 418 (430)
+||+.+++. +..+..+.. ..........+++| |+++|+ ++..++.|
T Consensus 247 ~~d~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 297 (331)
T 3u4y_A 247 NFNQLSGTLSFVKSFGHGLL-----------------------------IDPRPLFGANQMALNKTETKLFISANISREL 297 (331)
T ss_dssp EEETTTTEEEEEEEEECCCC-----------------------------CCCGGGTTCCCEEECTTSSEEEEEETTTTEE
T ss_pred EEECCCCceeeecccccccc-----------------------------cCCCCcccccceEECCCCCEEEEecCCCCcE
Confidence 999998876 443332100 00000011244566 677764 55567799
Q ss_pred EEEEecCC
Q 014104 419 RLWKFNYS 426 (430)
Q Consensus 419 ~vw~~~~~ 426 (430)
.+||+...
T Consensus 298 ~v~d~~~~ 305 (331)
T 3u4y_A 298 KVFTISGK 305 (331)
T ss_dssp EEEETTSC
T ss_pred EEEEecCC
Confidence 99999764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-21 Score=178.11 Aligned_cols=245 Identities=9% Similarity=0.029 Sum_probs=190.7
Q ss_pred cccceeEEEe-cCC-eEEEEeC-------CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEEEEc
Q 014104 111 HSVGVDQCRM-KRG-LILTGVG-------DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRR 179 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~ 179 (430)
....+..+++ +++ ++++++. ++.|.+||..+++.+..+........++++++++.++ + ..++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456778888 455 6666663 5689999999999999888777777899999999766 3 44689999999
Q ss_pred CCCccccc--CCCCc--------eeeeeEEEEcCCceEEEe--cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CE
Q 014104 180 NGLRSVFP--SREGT--------FMKGLCMRYFDPEAVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL 246 (430)
Q Consensus 180 ~~~~~~~~--~~~~~--------~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 246 (430)
++++.... ..... ....+.+.+++..+++++ .++.|.+||..+++.+..+..+...+..++|+|+ +.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 198 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR 198 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence 98874322 21111 134466777777766665 4789999999999998888756666889999976 78
Q ss_pred EEEEeCCCeEEEEeCCCCceeEEEecC---CCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCCCceeeeeecCCCceEE
Q 014104 247 IISGSSLGSIAISGLSSDQRVATLRST---DCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
+++++.++.|.+||+.+++.+..+... +...+..++|+|+|+++++++. ++.|.+||..+++.+..+..... ..
T Consensus 199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~ 276 (353)
T 3vgz_A 199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES--LA 276 (353)
T ss_dssp EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC--CC
T ss_pred EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC--ce
Confidence 888889999999999999988877641 3446788999999998776665 48999999999998887775432 56
Q ss_pred EEEeeCCCCeEEEEc-CCCeEEEEEcCCCceEEEEEe
Q 014104 323 LQHLQNDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 323 l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 358 (430)
++ ++|+++++++++ .++.|.+||+.+++.+..+..
T Consensus 277 ~~-~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 277 VL-FNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp EE-EETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EE-ECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence 77 999999665554 789999999999998887764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-22 Score=189.52 Aligned_cols=268 Identities=13% Similarity=0.044 Sum_probs=200.0
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEec--CCCeeEEeeecCCceeEEEEec----CCCEEE-EE-eCCe
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSL--EGYKCVEEYSLPNAASLVDFDF----DESKIV-GL-IGTR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~----~~~~l~-~~-~~~~ 173 (430)
.+.++..+.. +.+++| +++ +|++++.|++|++||+ .+++.+.++........++|+| ++++++ ++ .+++
T Consensus 171 ~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 171 IVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp EEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred EEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 4666763333 888888 566 9999999999999999 8899999998777788899999 999988 44 4899
Q ss_pred EEEEEcCCCcccccCC------------CCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeE--EeecCCCCeEE
Q 014104 174 ICIWRRNGLRSVFPSR------------EGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ--IIRMHCAPVTS 238 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~i~~ 238 (430)
|.+||..+.+.+.... .......+.++++++. +++...++.|.+||..+.+.+. .+. +...+..
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~ 328 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHD 328 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCC
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccC
Confidence 9999998876432211 1112233444444555 6777889999999998876544 443 5667889
Q ss_pred EEecCC-CEEEE-EeCCCeEEEEeCCCCceeEEEecC---CCCCeEEEEEecC-CCEEEEEe-CCCeEEEEeCCC-----
Q 014104 239 LSLSED-QLIIS-GSSLGSIAISGLSSDQRVATLRST---DCTGIKTLCYNPC-SRLVFAGT-TAGYASCWDLRT----- 306 (430)
Q Consensus 239 ~~~~~~-~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~~~~-~dg~i~i~d~~~----- 306 (430)
+.|+|+ +++++ +..+++|.+||..+++++..+... |.+....+ ++|+ |..++++. .|++|.+||+.+
T Consensus 329 ~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 329 GGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred ceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCch
Confidence 999986 65554 456899999999999998888742 43333333 5777 56666665 579999999998
Q ss_pred --CceeeeeecCCCceEEEEEeeCCCCeEEEEc-------CCCeEEEEEcCCCceE-EEEE--------eccCcceeeec
Q 014104 307 --MKSLWETRISPNVVYSLQHLQNDTSTLVVGG-------IDGVLRVLDQNTGEVL-SRCV--------MDIGSASSSSN 368 (430)
Q Consensus 307 --~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-------~dg~i~vwd~~~~~~~-~~~~--------~~~~~~~~~~~ 368 (430)
.+.+.++..|.+.+..+. ++|++++|++++ .+++|.+||+.+++.. ..+. .+...+..+.+
T Consensus 408 ~~~~~v~~l~~~g~~~~~v~-~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 408 YAWKKVAELQGQGGGSLFIK-THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 486 (543)
T ss_dssp TBTSEEEEEECSCSCCCCEE-CCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEE
T ss_pred hcCeEEEEEEcCCCCceEEE-cCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccC
Confidence 889999999988888898 999999999987 2679999999999877 4442 22344455566
Q ss_pred cCCceEE
Q 014104 369 KVSGVIE 375 (430)
Q Consensus 369 s~d~~v~ 375 (430)
++||...
T Consensus 487 ~~~g~~~ 493 (543)
T 1nir_A 487 NKRGDEV 493 (543)
T ss_dssp CSSSSEE
T ss_pred CCCCCEE
Confidence 6666543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.8e-22 Score=178.39 Aligned_cols=262 Identities=11% Similarity=0.154 Sum_probs=177.6
Q ss_pred eEEEEeCCCeEEEEecC-CC--eeEEeeecCCceeEEEEecCCCEEE-EEeC-CeEEEEEcC--CCcc--cccCCCCcee
Q 014104 124 LILTGVGDKVMRLWSLE-GY--KCVEEYSLPNAASLVDFDFDESKIV-GLIG-TRICIWRRN--GLRS--VFPSREGTFM 194 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~i~vwd~~--~~~~--~~~~~~~~~~ 194 (430)
.+++++.|+.|++||+. ++ +.+..+.....+..++|+|+++.++ ++.+ +.|.+|+++ ++.. +.........
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 86 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 86 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCC
Confidence 44455789999999985 33 4455566666778899999999888 5554 899999998 4442 1111111233
Q ss_pred eeeEEEEcCCceEEEe-cCCeEEEEECC---CCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEeCCC-Ccee
Q 014104 195 KGLCMRYFDPEAVVGC-EDGTARVFDMY---SRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSS-DQRV 267 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~-~dg~i~vwd~~---~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd~~~-~~~~ 267 (430)
..+++.+++..+++++ .++.|.+||+. +.+.+..+.. ...+.+++|+|+ +.+++++ .++.|.+||+.+ ++..
T Consensus 87 ~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 87 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred cEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 4566667777676665 48899999994 4445555543 345889999986 6666666 899999999987 6543
Q ss_pred E----EEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCC--Cce--eeeee---cC---CCceEEEEEeeCCCCe
Q 014104 268 A----TLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRT--MKS--LWETR---IS---PNVVYSLQHLQNDTST 332 (430)
Q Consensus 268 ~----~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~--~~~--~~~~~---~~---~~~v~~l~~~s~~~~~ 332 (430)
. .+.......+..++|+|+++++++++ .++.|.+||+.. ++. ...+. .. ...+..++ |+|++++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~-~s~dg~~ 244 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH-ITPDGRH 244 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE-ECTTSSE
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE-ECCCCCE
Confidence 2 23332345788999999999776554 789999999953 332 22222 11 23466788 9999988
Q ss_pred EE-EEcCCCeEEEEEcC--CCc--eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 333 LV-VGGIDGVLRVLDQN--TGE--VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 333 l~-s~~~dg~i~vwd~~--~~~--~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
|+ ++..++.|.+||+. ++. .+..+..+ ..+.+++| +
T Consensus 245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~s~d 287 (343)
T 1ri6_A 245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTE-------------------------------------TQPRGFNVDHS 287 (343)
T ss_dssp EEEEETTTTEEEEEEECTTSCCEEEEEEEECS-------------------------------------SSCCCEEECTT
T ss_pred EEEEecCCCEEEEEEEcCCCCceEEeeeecCC-------------------------------------CccceEEECCC
Confidence 77 55579999999998 332 23323211 12556667 5
Q ss_pred CeEEEEee-CCCeEEEEEec
Q 014104 406 MKKVVTTH-NSKYIRLWKFN 424 (430)
Q Consensus 406 ~~~l~t~~-~Dg~v~vw~~~ 424 (430)
+++|++++ .|+.|.+|+++
T Consensus 288 g~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 288 GKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SSEEEEECTTTCEEEEEEEE
T ss_pred CCEEEEecCCCCeEEEEEEc
Confidence 77676666 68999999765
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-22 Score=201.85 Aligned_cols=243 Identities=9% Similarity=-0.030 Sum_probs=181.3
Q ss_pred ccceeEEEe-cCC-eEEEEeC-CC-----eEEEEecCCCeeEEeeecCC-------------------------ceeEEE
Q 014104 112 SVGVDQCRM-KRG-LILTGVG-DK-----VMRLWSLEGYKCVEEYSLPN-------------------------AASLVD 158 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~-dg-----~i~iwd~~~~~~~~~~~~~~-------------------------~~~~~~ 158 (430)
...+.+++| +|| +|++++. |+ .|++||+.+++....+..+. .+..++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456889999 566 8999988 88 99999999988776665431 246689
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCC---cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCC
Q 014104 159 FDFDESKIVGLIGTRICIWRRNGL---RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235 (430)
Q Consensus 159 ~~~~~~~l~~~~~~~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (430)
|+|||+.|+.+.++.|.+||+.++ +...............+++++..|+.++ ++.|++||+.+++.......+...
T Consensus 116 ~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 116 WSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTT 194 (741)
T ss_dssp ECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSS
T ss_pred ECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccc
Confidence 999999999666699999999987 4322222223345577888888888877 469999999988776555444332
Q ss_pred ----------------eEEEEecCC-CEEEEEeCCC---------------------------------eEEEEeCCC-C
Q 014104 236 ----------------VTSLSLSED-QLIISGSSLG---------------------------------SIAISGLSS-D 264 (430)
Q Consensus 236 ----------------i~~~~~~~~-~~l~~~~~dg---------------------------------~i~vwd~~~-~ 264 (430)
+..++|+|+ +.|++++.|+ .|.+||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 477999987 7788877665 899999988 7
Q ss_pred ceeEEEec-CCCCCeEEEEEecCCCEEEEEeC-----CCeEEEEeCCCCceeeeeecCCC----ceEEEEEeeCCCCeEE
Q 014104 265 QRVATLRS-TDCTGIKTLCYNPCSRLVFAGTT-----AGYASCWDLRTMKSLWETRISPN----VVYSLQHLQNDTSTLV 334 (430)
Q Consensus 265 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~----~v~~l~~~s~~~~~l~ 334 (430)
+....... .+...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++ |+|||++++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~-~spdg~~~~ 352 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLR-FLDDGSILW 352 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCE-ECTTSCEEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceE-ECCCCeEEE
Confidence 76544322 25568999999 99999987654 56799999999887766665543 345777 999999999
Q ss_pred EEcCCCeEEEEEcC-CCceEEEEEe
Q 014104 335 VGGIDGVLRVLDQN-TGEVLSRCVM 358 (430)
Q Consensus 335 s~~~dg~i~vwd~~-~~~~~~~~~~ 358 (430)
+++.||.++||.++ ++. ...+..
T Consensus 353 ~~~~~g~~~l~~~~~~~~-~~~l~~ 376 (741)
T 2ecf_A 353 SSERTGFQHLYRIDSKGK-AAALTH 376 (741)
T ss_dssp EECTTSSCEEEEECSSSC-EEESCC
T ss_pred EecCCCccEEEEEcCCCC-eeeeee
Confidence 99999988888765 344 444433
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=203.63 Aligned_cols=263 Identities=10% Similarity=0.007 Sum_probs=206.1
Q ss_pred eEEEEeccccceeEEEecCC-eEEEEeCCCeEEEEecCC-CeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 104 DIDQWKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEG-YKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
....+.+|.+.+.++.|+++ ++++++.|+.+++|.+.. +.....+..+......+|+|+|+.++...++.|.+|+++.
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~ 274 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDT 274 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTT
T ss_pred CeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCc
Confidence 44566899999999999655 667788889999998653 3444555555556678999999999966899999999954
Q ss_pred CcccccCCCC------------ceeeeeEEE-EcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-CeEEEEecCC-CE
Q 014104 182 LRSVFPSREG------------TFMKGLCMR-YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-PVTSLSLSED-QL 246 (430)
Q Consensus 182 ~~~~~~~~~~------------~~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~~~~-~~ 246 (430)
.... ..... .....+.++ +++..+++++ ++.|.+|++.+++.. .+..|.. .+..++|+ + +.
T Consensus 275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~ 350 (1045)
T 1k32_A 275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVA 350 (1045)
T ss_dssp CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEE
T ss_pred eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCe
Confidence 4322 11111 124457788 8888788877 789999999877654 4566777 89999999 6 67
Q ss_pred EEEEeCCCeEE-EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEE
Q 014104 247 IISGSSLGSIA-ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH 325 (430)
Q Consensus 247 l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~ 325 (430)
++.++.++.+. +||+.+++.. .+.. +...+..++|+|+|++|++++.++.|++||+.+++.......|.+.+.+++
T Consensus 351 l~~~s~~~~l~~~~d~~~~~~~-~l~~-~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~- 427 (1045)
T 1k32_A 351 FIHGTREGDFLGIYDYRTGKAE-KFEE-NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFT- 427 (1045)
T ss_dssp EEEEETTEEEEEEEETTTCCEE-ECCC-CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEE-
T ss_pred EEEEECCCceEEEEECCCCCce-EecC-CccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceE-
Confidence 88888888898 9999877654 4443 777899999999999999999999999999999988877778888899998
Q ss_pred eeCCCCeEEEEcCCC----------eEEEEEcCCCceEEEEEeccCcceeeeccCCceE
Q 014104 326 LQNDTSTLVVGGIDG----------VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVI 374 (430)
Q Consensus 326 ~s~~~~~l~s~~~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v 374 (430)
|+|||++|++++.++ .|++||+.+++ +..+..+......+++++||..
T Consensus 428 ~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~ 485 (1045)
T 1k32_A 428 ISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKN 485 (1045)
T ss_dssp ECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCE
T ss_pred ECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCE
Confidence 999999998887654 89999999877 6666666666666778888864
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-21 Score=174.20 Aligned_cols=223 Identities=11% Similarity=0.062 Sum_probs=167.9
Q ss_pred EEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC-Ccccc--cCCCCceeeeeEEEEcC
Q 014104 127 TGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG-LRSVF--PSREGTFMKGLCMRYFD 203 (430)
Q Consensus 127 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~-~~~~~--~~~~~~~~~~~~~~~~~ 203 (430)
+++.|++|++||+.+++..........+..++|+|++++|+.+.++.|.+||+++ ++... ..+.......+.+.+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 4567899999999999888767666778899999999999977799999999998 65432 22222344557788888
Q ss_pred CceEEEec--C--CeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE-EEeCCCeEEEEeCC--CCceeEEEecCCC
Q 014104 204 PEAVVGCE--D--GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII-SGSSLGSIAISGLS--SDQRVATLRSTDC 275 (430)
Q Consensus 204 ~~l~~~~~--d--g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~dg~i~vwd~~--~~~~~~~~~~~~~ 275 (430)
..+++++. + ..|..++..+++ ...+..+ ..+..++|+|+ +.++ +++.++.+.+|++. +++ ...+.. +.
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~ 172 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTH-GE 172 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCC-SS
T ss_pred CEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEccc-CC
Confidence 88888883 3 455555655554 3444433 35889999976 5555 78889999999853 343 344443 66
Q ss_pred CCeEEEEEecCCCEEEEEe-CCCeEEEEeCC-CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC-----------CeE
Q 014104 276 TGIKTLCYNPCSRLVFAGT-TAGYASCWDLR-TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID-----------GVL 342 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----------g~i 342 (430)
..+.+++|+|+|+.|+.++ .++.+.+|++. .+..+..+..|...+..+. |+|++++|++++.+ +.|
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~s~dg~~l~~~~~~~~~~~~~~~~~~~l 251 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPH-PSPSGDKVVFVSYDADVFDHPRDLDVRV 251 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEE-ECTTSSEEEEEEEETTCCSCCSSEEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeE-ECCCCCEEEEEEcCCCCCcccccCceEE
Confidence 7899999999999888665 58889999886 4566677777878888998 99999999888765 569
Q ss_pred EEEEcCCCceEE
Q 014104 343 RVLDQNTGEVLS 354 (430)
Q Consensus 343 ~vwd~~~~~~~~ 354 (430)
++||+.+++...
T Consensus 252 ~~~d~~~~~~~~ 263 (297)
T 2ojh_A 252 QLMDMDGGNVET 263 (297)
T ss_dssp EEEETTSCSCEE
T ss_pred EEEecCCCCcee
Confidence 999999876533
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=194.12 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=176.5
Q ss_pred cceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC-----Ccccc
Q 014104 113 VGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG-----LRSVF 186 (430)
Q Consensus 113 ~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~-----~~~~~ 186 (430)
..|.+++|+ ++.++.+ .++.|++||+.+++..........+..++|+|||+.|+...++.|.+||+.+ ++...
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~ 160 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIA 160 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEE
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEE
Confidence 468999994 5555544 4599999999998877665555667779999999999977899999999998 65432
Q ss_pred --cCCCCce-------------eeeeEEEEcCCceEEEe---------------------------------cCCeEEEE
Q 014104 187 --PSREGTF-------------MKGLCMRYFDPEAVVGC---------------------------------EDGTARVF 218 (430)
Q Consensus 187 --~~~~~~~-------------~~~~~~~~~~~~l~~~~---------------------------------~dg~i~vw 218 (430)
....... ...+.+++++..|++++ .+..|.+|
T Consensus 161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~ 240 (706)
T 2z3z_A 161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY 240 (706)
T ss_dssp SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence 2222211 35677888888888887 45789999
Q ss_pred ECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeCCC-----eEEEEeCCCCceeEEEe-cCCCC---CeEEEEEec-
Q 014104 219 DMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLG-----SIAISGLSSDQRVATLR-STDCT---GIKTLCYNP- 285 (430)
Q Consensus 219 d~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg-----~i~vwd~~~~~~~~~~~-~~~~~---~v~~~~~~~- 285 (430)
|+.+++...... .|...+.+++|+|+ +.+++++.++ .|.+||+.+++....+. ..+.. .+..++|+|
T Consensus 241 d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~ 320 (706)
T 2z3z_A 241 HLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPG 320 (706)
T ss_dssp ETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTT
T ss_pred ECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecC
Confidence 999887654442 46678999999987 6788877665 99999999984433332 21222 346789999
Q ss_pred -CCCEEEEEeCCCeEEEEeCC-CCceeeeeecCCCceEE-EEEeeCCCCeEEEEcC-CC----eEEEEEcCCCc
Q 014104 286 -CSRLVFAGTTAGYASCWDLR-TMKSLWETRISPNVVYS-LQHLQNDTSTLVVGGI-DG----VLRVLDQNTGE 351 (430)
Q Consensus 286 -~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~-l~~~s~~~~~l~s~~~-dg----~i~vwd~~~~~ 351 (430)
+|++++++..|+.+++|++. +++.+..+..+...+.. ++ |+|+++.|+.++. ++ .|..||+.+++
T Consensus 321 ~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~-~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 321 SNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAG-FDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEE-ECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred CCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeE-EcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 99999999999999999876 56777778777777877 56 9999998765554 44 67777777655
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=203.44 Aligned_cols=309 Identities=13% Similarity=0.080 Sum_probs=218.0
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCC------------ceeEEEEe-cCCCEEEEEe
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN------------AASLVDFD-FDESKIVGLI 170 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~~~~-~~~~~l~~~~ 170 (430)
..+.+|. .+...+| ++| +|+++ .++.|.+||+...+. ..+..+. .+..++|+ |||+.++...
T Consensus 239 ~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~ 315 (1045)
T 1k32_A 239 RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS 315 (1045)
T ss_dssp EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence 3444554 3556677 566 67776 589999999955443 3444322 46779999 9999999666
Q ss_pred CCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCceEEEecCCeEE-EEECCCCeeeEEeecCCCCeEEEEecCC-CEE
Q 014104 171 GTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAVVGCEDGTAR-VFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l 247 (430)
++.+.+|++.++.... ..+.........+. ++..+++++.++.+. +||+.+++... +.+|...+..++|+|+ +.+
T Consensus 316 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~l 393 (1045)
T 1k32_A 316 RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFA 393 (1045)
T ss_dssp TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEE
T ss_pred cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEE
Confidence 9999999998776432 22222133334445 555588888888898 99998776543 4478889999999987 889
Q ss_pred EEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC----------eEEEEeCCCCceeeeeecCC
Q 014104 248 ISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG----------YASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~i~d~~~~~~~~~~~~~~ 317 (430)
++++.++.|++||+.+++....+.. +...+.+++|+|+|++|++++.++ .|++||+.+++ +..+..|.
T Consensus 394 a~~~~~~~v~~~d~~tg~~~~~~~~-~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 394 VVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred EEECCCCeEEEEECCCCceEEeccC-CCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 9999999999999999988777755 777899999999999998877654 89999999877 66777788
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce-------------------------------------------EE
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV-------------------------------------------LS 354 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~-------------------------------------------~~ 354 (430)
..+..++ |+|+|++|++++.++...+|+...... +.
T Consensus 472 ~~~~~~~-~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 550 (1045)
T 1k32_A 472 SHDYAPA-FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS 550 (1045)
T ss_dssp SBEEEEE-ECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCE
T ss_pred cccCCce-EcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceE
Confidence 8888998 999999999999888777776543221 11
Q ss_pred EEEeccCcceeeeccCCceEEEe------------------ecccccCC-cccccCCCCCCCCeeEEEE--cCeEEEEee
Q 014104 355 RCVMDIGSASSSSNKVSGVIERN------------------EGRRLSAG-CCIDRIPKTIRPPITCLAV--GMKKVVTTH 413 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~------------------~~~~~~~~-~~~~~~~~~h~~~v~~v~~--~~~~l~t~~ 413 (430)
.+..+...+..+++++||.+... ..+.+... .....+. ..+.++++ ||++|++++
T Consensus 551 ~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~ 626 (1045)
T 1k32_A 551 PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRK 626 (1045)
T ss_dssp ECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEE
T ss_pred EcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEc
Confidence 12222233345667777765442 01111100 0011111 34667777 699999988
Q ss_pred CCCeEEEEEecCCC
Q 014104 414 NSKYIRLWKFNYSD 427 (430)
Q Consensus 414 ~Dg~v~vw~~~~~~ 427 (430)
.| .|++||+.+++
T Consensus 627 ~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 627 DD-GKIYTFPLEKP 639 (1045)
T ss_dssp TT-SCEEEEESSCT
T ss_pred CC-cEEEEeCccCc
Confidence 77 79999998876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-20 Score=169.87 Aligned_cols=252 Identities=13% Similarity=0.027 Sum_probs=184.6
Q ss_pred EeEEEEec-ccc-ceeEEEe-cCC-e-EEEEeCCCeEEEEecCCCeeEEeeecCC------ceeEEEEecCCCEEEEE--
Q 014104 103 IDIDQWKA-HSV-GVDQCRM-KRG-L-ILTGVGDKVMRLWSLEGYKCVEEYSLPN------AASLVDFDFDESKIVGL-- 169 (430)
Q Consensus 103 ~~~~~l~~-h~~-~v~~~~~-~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~-- 169 (430)
..+..+.. +.. .+..+++ +++ + +++++.++.|.+||+.+++.+..+.... .+..++|+++++.++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 101 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES 101 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEec
Confidence 44555552 322 4788888 566 4 4566668999999999999888777543 56679999999988843
Q ss_pred -----------eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEE
Q 014104 170 -----------IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS 238 (430)
Q Consensus 170 -----------~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 238 (430)
.++.|.+||+++++.......+.....+.+.+++..++++ ++.|.+||+.+++.+..+..+... ..
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~ 178 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AE 178 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TT
T ss_pred ccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CC
Confidence 4799999999987654332223333456677777777777 688999999999888777644311 12
Q ss_pred EEecCC-CEEEEEe-CCC-----------------------eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE
Q 014104 239 LSLSED-QLIISGS-SLG-----------------------SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 239 ~~~~~~-~~l~~~~-~dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
+.|+|+ ..++..+ .++ .|.+||+.+++....-...+...+.+++|+|+|++++++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 258 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe
Confidence 256665 3333322 222 478999999887522122255578899999999999988
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 294 TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 294 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
++.|.+||+.+++.+..+..+ ..+.+++ |+|+|++|++++.++.|++||+.+++.+..+..+..
T Consensus 259 --~~~v~~~d~~~~~~~~~~~~~-~~~~~~~-~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 259 --YNVLESFDLEKNASIKRVPLP-HSYYSVN-VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp --ESEEEEEETTTTEEEEEEECS-SCCCEEE-ECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred --CCeEEEEECCCCcCcceecCC-CceeeEE-ECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 689999999999888777644 4678888 999999999999999999999999999998876543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-20 Score=168.53 Aligned_cols=209 Identities=9% Similarity=0.063 Sum_probs=162.7
Q ss_pred eecCCceeEEEEecCCCEEEEEe--------CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCCeEEEE
Q 014104 148 YSLPNAASLVDFDFDESKIVGLI--------GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVF 218 (430)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~--------~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vw 218 (430)
.........++++++++.++.+. ++.|.+||..+++.......+.....+.+.+++..+ ++...++.|.+|
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAI 116 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEE
Confidence 33345667799999999888333 668999999988754333323334457777787764 455567999999
Q ss_pred ECCCCeeeEEeecCCCC---------eEEEEecCC-CEEEEEe--CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecC
Q 014104 219 DMYSRKCSQIIRMHCAP---------VTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPC 286 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~---------i~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 286 (430)
|..+++.+..+..+... +.+++++|+ +.+++++ .++.|.+||..+++.+..+.. +...+.+++|+|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceEEECCC
Confidence 99999988888765432 688999976 6565554 578999999999999888874 4446889999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeeeec----CCCceEEEEEeeCCCCeEEEEcC-CCeEEEEEcCCCceEEEEEe
Q 014104 287 SRLVFAGTTAGYASCWDLRTMKSLWETRI----SPNVVYSLQHLQNDTSTLVVGGI-DGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 287 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~ 358 (430)
|+++++++.++.|.+||+.+++.+..+.. +...+.+++ ++|+++++++++. ++.|.+||+.+++.+..+..
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 271 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINIS-LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA 271 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEE-EETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEE-ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 99999999999999999999988877664 445677888 9999997766654 59999999999998887764
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.7e-21 Score=193.16 Aligned_cols=256 Identities=9% Similarity=0.006 Sum_probs=169.8
Q ss_pred cccCCEeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCee--EEeeecC-----------------CceeEEE
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC--VEEYSLP-----------------NAASLVD 158 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~-----------------~~~~~~~ 158 (430)
+.+|+..-..|..+. +..+.|.++.+++++.|+ | +||+.+++. ...+... ..+..++
T Consensus 13 ~~~~~~~~~~~~~~~--~~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 88 (706)
T 2z3z_A 13 LMPGGKEFYNFYPEY--VVGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTL 88 (706)
T ss_dssp -----------------CTTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEE
T ss_pred ccCCccccccccccc--CCCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEE
Confidence 345555555666553 444555555777777788 8 999999887 3333322 3477799
Q ss_pred EecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCC-----CeeeEEeecCC
Q 014104 159 FDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-----RKCSQIIRMHC 233 (430)
Q Consensus 159 ~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~ 233 (430)
|+|| +.++.+.++.+.+||+.+++...............+++++..++++ .++.|++||+.+ ++.......+.
T Consensus 89 ~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~ 166 (706)
T 2z3z_A 89 DAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT 166 (706)
T ss_dssp ETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred ECCC-CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence 9999 7888667899999999988643322222334557788888888874 689999999988 77665444333
Q ss_pred CC--------------eEEEEecCC-CEEEEEe---------------------------------CCCeEEEEeCCCCc
Q 014104 234 AP--------------VTSLSLSED-QLIISGS---------------------------------SLGSIAISGLSSDQ 265 (430)
Q Consensus 234 ~~--------------i~~~~~~~~-~~l~~~~---------------------------------~dg~i~vwd~~~~~ 265 (430)
.. +.++.|+|+ +.|++++ .+..|.+||+.+++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 32 478999987 7888876 44789999999887
Q ss_pred eeEEEec-CCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCceeeeee--cCCC---ceEEEEEeeC--CCCe
Q 014104 266 RVATLRS-TDCTGIKTLCYNPCSRLVFAGTTAG-----YASCWDLRTMKSLWETR--ISPN---VVYSLQHLQN--DTST 332 (430)
Q Consensus 266 ~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~--~~~~---~v~~l~~~s~--~~~~ 332 (430)
....... .+...+.+++|+|+|+.|++++.++ .|++||+.+++....+. .+.. .+.++. |+| +|++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-~sp~~dg~~ 325 (706)
T 2z3z_A 247 TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT-FLPGSNNQF 325 (706)
T ss_dssp EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE-ECTTCSSEE
T ss_pred eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce-eecCCCCEE
Confidence 6544432 2556799999999999999887765 89999999884333332 2222 235677 999 9999
Q ss_pred EEEEcCCCeEEEEEcC-CCceEEEEEecc
Q 014104 333 LVVGGIDGVLRVLDQN-TGEVLSRCVMDI 360 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~-~~~~~~~~~~~~ 360 (430)
+++++.||.+++|+++ ++..+..+..+.
T Consensus 326 l~~~~~~g~~~l~~~~~~~~~~~~l~~~~ 354 (706)
T 2z3z_A 326 IWQSRRDGWNHLYLYDTTGRLIRQVTKGE 354 (706)
T ss_dssp EEEECTTSSCEEEEEETTSCEEEECCCSS
T ss_pred EEEEccCCccEEEEEECCCCEEEecCCCC
Confidence 9999999999999886 566666665443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-19 Score=164.71 Aligned_cols=243 Identities=12% Similarity=0.070 Sum_probs=170.5
Q ss_pred EeccccceeEEEe-cCC-eEEEEeCC-CeEEEEecC--CCe--eEEeeecCCceeEEEEecCCCEEE-EEe-CCeEEEEE
Q 014104 108 WKAHSVGVDQCRM-KRG-LILTGVGD-KVMRLWSLE--GYK--CVEEYSLPNAASLVDFDFDESKIV-GLI-GTRICIWR 178 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s~~~d-g~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~i~vwd 178 (430)
...|...+.+++| +++ +|++++.+ +.|.+|++. +++ .+..+..+..+..++|+|+++.++ ++. ++.|.+||
T Consensus 33 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 3457788899999 566 78888876 999999997 554 445566556777899999999887 443 78899999
Q ss_pred cCCC---cccccCCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCC-CeeeE----Eeec-CCCCeEEEEecCC-CEE
Q 014104 179 RNGL---RSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYS-RKCSQ----IIRM-HCAPVTSLSLSED-QLI 247 (430)
Q Consensus 179 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~-~~~~~----~~~~-~~~~i~~~~~~~~-~~l 247 (430)
+..+ +.............+++.+++..+++++ .++.|.+||+.+ ++... .+.. ....+..++|+|+ +++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l 192 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA 192 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEE
Confidence 9422 2222222223345567777777777776 899999999987 64432 2232 2347889999986 555
Q ss_pred E-EEeCCCeEEEEeCCC--Cce--eEEEec---CC--CCCeEEEEEecCCCEEEE-EeCCCeEEEEeCC--C--Cceeee
Q 014104 248 I-SGSSLGSIAISGLSS--DQR--VATLRS---TD--CTGIKTLCYNPCSRLVFA-GTTAGYASCWDLR--T--MKSLWE 312 (430)
Q Consensus 248 ~-~~~~dg~i~vwd~~~--~~~--~~~~~~---~~--~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~--~--~~~~~~ 312 (430)
+ ++..++.|.+||+.. ++. ...+.. .+ ...+..++|+|+|++|++ +..++.|.+||+. + .+.+..
T Consensus 193 ~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 193 YCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp EEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeee
Confidence 4 445889999999953 433 223321 11 235678999999998874 4478999999998 2 344555
Q ss_pred eecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEc--CCCce
Q 014104 313 TRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQ--NTGEV 352 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~--~~~~~ 352 (430)
+..+.. +..++ |+|+|++|++++ .++.|.+|++ .+++.
T Consensus 273 ~~~~~~-~~~~~-~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 273 QPTETQ-PRGFN-VDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EECSSS-CCCEE-ECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred ecCCCc-cceEE-ECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 555544 88888 999999888887 6899999954 45643
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=171.67 Aligned_cols=235 Identities=11% Similarity=0.072 Sum_probs=179.4
Q ss_pred EEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEE-E-EeCCeEEEEEcCCCcccccCCCC
Q 014104 118 CRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIV-G-LIGTRICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 118 ~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~~~~~~~~~~ 191 (430)
++++ ++ ++++++.+++|.+||+.+++.+..+..+. ....++++|+++.++ + ..++.|.+||+.+++........
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 4453 44 88899999999999999999998888766 677899999998766 3 35789999999988754322211
Q ss_pred -------ceeeeeEEEEcCCceEEEecC------------CeEEEEECCCCee---eEEeecCCCCeEEEEecCCCEEEE
Q 014104 192 -------TFMKGLCMRYFDPEAVVGCED------------GTARVFDMYSRKC---SQIIRMHCAPVTSLSLSEDQLIIS 249 (430)
Q Consensus 192 -------~~~~~~~~~~~~~~l~~~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~~ 249 (430)
.....+.+.+++..+++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+..+++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~ 163 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYV 163 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEE
Confidence 113446677777788888765 8999999988543 33444 344688999998733555
Q ss_pred EeCCCeEEEEeCCCCceeEEEecCC-------------------------------------------------------
Q 014104 250 GSSLGSIAISGLSSDQRVATLRSTD------------------------------------------------------- 274 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~~~------------------------------------------------------- 274 (430)
++. .|.+||+.+++.+..+....
T Consensus 164 ~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 241 (349)
T 1jmx_B 164 AGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 241 (349)
T ss_dssp ESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred ccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEecc
Confidence 543 49999999988877765321
Q ss_pred ------------CCCeEEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 275 ------------CTGIKTLCYNP-CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 275 ------------~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
...+..++|+| +|++++++ ++.|.+||+.+++.+..+... ..+.+++ ++|++++|++++.++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~-~s~dg~~l~~~~~~~~ 317 (349)
T 1jmx_B 242 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-HTYYCVA-FDKKGDKLYLGGTFND 317 (349)
T ss_dssp TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEE-ECSSSSCEEEESBSSE
T ss_pred CCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-CCccceE-ECCCCCEEEEecCCCe
Confidence 01345677789 99999888 889999999999888777643 4567888 9999999999989999
Q ss_pred EEEEEcCCCceEEEEEec
Q 014104 342 LRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~ 359 (430)
|++||+.+++.+..+...
T Consensus 318 v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 318 LAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEETTTTEEEEEEECS
T ss_pred EEEEeccccceeeeeecC
Confidence 999999999999988765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-20 Score=167.07 Aligned_cols=245 Identities=10% Similarity=0.010 Sum_probs=175.2
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeC-CCeEEEEecCCCee-EEeeecCCceeE-EEEecCCCEEEEEeCC----e
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKC-VEEYSLPNAASL-VDFDFDESKIVGLIGT----R 173 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~l~~~~~~----~ 173 (430)
..+..+..+...+ +++| +++ ++++++. ++.|.+||..+++. ...+..+..... ++|+|++++++++.++ .
T Consensus 31 ~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~ 109 (331)
T 3u4y_A 31 EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFN 109 (331)
T ss_dssp CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCE
T ss_pred ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCccc
Confidence 3455556666666 8888 566 5666555 89999999999887 777777666677 9999999999854444 8
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEE-ecCCe-EEEEECCCCeee----EEeecCCCCeEEEEecCC-CE
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG-CEDGT-ARVFDMYSRKCS----QIIRMHCAPVTSLSLSED-QL 246 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~-i~vwd~~~~~~~----~~~~~~~~~i~~~~~~~~-~~ 246 (430)
|.+||+++++.+.....+.....+++.+++..++++ ..++. |.+|++.....+ .........+..++|+|+ ++
T Consensus 110 i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 110 MQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF 189 (331)
T ss_dssp EEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE
T ss_pred EEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE
Confidence 999999988754333333334556777777765554 55578 999998754332 111233456889999987 54
Q ss_pred -EEEEeCCCeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCce--eeeeecC---
Q 014104 247 -IISGSSLGSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKS--LWETRIS--- 316 (430)
Q Consensus 247 -l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~~~--- 316 (430)
++++..++.|.+||+.+++. +..+.. ...+..++|+|+|+++++++ .++.|.+||+.+++. +..+..+
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 267 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLI 267 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCC
T ss_pred EEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccccc
Confidence 45555789999999999988 777773 45788999999999777655 477899999998876 3333222
Q ss_pred -CCc---eEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCCc
Q 014104 317 -PNV---VYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTGE 351 (430)
Q Consensus 317 -~~~---v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~ 351 (430)
... ...++ |+|+|++|++++ .++.|.+||+....
T Consensus 268 ~~~~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 268 DPRPLFGANQMA-LNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp CCGGGTTCCCEE-ECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCCCcccccceE-ECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 222 24477 999999886554 56799999998543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=189.87 Aligned_cols=256 Identities=13% Similarity=0.058 Sum_probs=183.5
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCC---eeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
.|.+++| +|| +|++++. +.|.+||+.++ +..........+..++|+|||+.|+...++.|.+||+.+++.....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEECC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEec
Confidence 3788889 566 7888776 99999999987 4443333335677899999999999777889999999987643222
Q ss_pred CCCc--e---------------eeeeEEEEcCCceEEEecCC---------------------------------eEEEE
Q 014104 189 REGT--F---------------MKGLCMRYFDPEAVVGCEDG---------------------------------TARVF 218 (430)
Q Consensus 189 ~~~~--~---------------~~~~~~~~~~~~l~~~~~dg---------------------------------~i~vw 218 (430)
..+. . ...+.|++++..|++++.|+ .|.+|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 2111 1 24578888888898887765 88999
Q ss_pred ECCC-CeeeEEee--cCCCCeEEEEecCC-CEEEEEeC-----CCeEEEEeCCCCceeEEEecCCCC---CeEEEEEecC
Q 014104 219 DMYS-RKCSQIIR--MHCAPVTSLSLSED-QLIISGSS-----LGSIAISGLSSDQRVATLRSTDCT---GIKTLCYNPC 286 (430)
Q Consensus 219 d~~~-~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~ 286 (430)
|+.+ ++...... .|...+..++| |+ +.|++++. +..|.+||+.+++....+...... .+..++|+|+
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTT
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCC
Confidence 9988 77654443 36778999999 87 67776543 578999999999887776652322 4568899999
Q ss_pred CCEEEEEeCCCeEEEEeCC-CCceeeeeecCCCceEEEEEeeCCCCeEEE-EcCCC--eEEEEEcCC-CceEEEEEeccC
Q 014104 287 SRLVFAGTTAGYASCWDLR-TMKSLWETRISPNVVYSLQHLQNDTSTLVV-GGIDG--VLRVLDQNT-GEVLSRCVMDIG 361 (430)
Q Consensus 287 ~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s-~~~dg--~i~vwd~~~-~~~~~~~~~~~~ 361 (430)
|+++++++.||.+.+|.+. +++ ...+..|...+..+..|+|+++.|+. ++.++ .+++|++.. +.....+.. ..
T Consensus 348 g~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~ 425 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-AP 425 (741)
T ss_dssp SCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SC
T ss_pred CeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CC
Confidence 9999999999987777665 344 67777787788877449999997754 44555 899999864 544554443 33
Q ss_pred cceeeeccCCce
Q 014104 362 SASSSSNKVSGV 373 (430)
Q Consensus 362 ~~~~~~~s~d~~ 373 (430)
.+..+++|+||.
T Consensus 426 ~~~~~~~spdg~ 437 (741)
T 2ecf_A 426 GMHSASFARNAS 437 (741)
T ss_dssp SEEEEEECTTSS
T ss_pred CceEEEECCCCC
Confidence 233344444443
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-21 Score=194.01 Aligned_cols=230 Identities=9% Similarity=0.002 Sum_probs=168.7
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc----eeEEEEecCCCEEE-EEeC---------CeEEEE
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA----ASLVDFDFDESKIV-GLIG---------TRICIW 177 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~-~~~~---------~~i~vw 177 (430)
.+.+++| ++| ++++ +.||+|++||+.+++....+..+.. +..++|+|||++|+ ++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3567888 566 5554 7899999999999988877776543 77899999999998 4443 789999
Q ss_pred EcCCCccc-ccCCCCc--eeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe------------------
Q 014104 178 RRNGLRSV-FPSREGT--FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV------------------ 236 (430)
Q Consensus 178 d~~~~~~~-~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i------------------ 236 (430)
|+++++.. +.....+ ......+++++..|+.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~ 175 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH 175 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence 99988642 2222222 1345678888888888876 799999999888776665444333
Q ss_pred EEEEecCC-CEEEEEeCCC----------------------------------eEEEEeCCCCceeEEEecC-----CCC
Q 014104 237 TSLSLSED-QLIISGSSLG----------------------------------SIAISGLSSDQRVATLRST-----DCT 276 (430)
Q Consensus 237 ~~~~~~~~-~~l~~~~~dg----------------------------------~i~vwd~~~~~~~~~~~~~-----~~~ 276 (430)
.+++|+|+ +.|++++.|+ .|++||+.+++....+..+ +..
T Consensus 176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~ 255 (723)
T 1xfd_A 176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY 255 (723)
T ss_dssp EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence 78999987 7788876543 8999999988865666542 145
Q ss_pred CeEEEEEecCCCEEEEEeC----CCeEEEEeCCCCceeeeeecC-CCceE----EEEEeeCCCCeEEE--EcCCC-----
Q 014104 277 GIKTLCYNPCSRLVFAGTT----AGYASCWDLRTMKSLWETRIS-PNVVY----SLQHLQNDTSTLVV--GGIDG----- 340 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~-~~~v~----~l~~~s~~~~~l~s--~~~dg----- 340 (430)
.+..++|+|||+++++... +..|++||+.+++....+..+ ...+. .+. |+|||+.|+. +..++
T Consensus 256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV-FSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE-ECTTSCSEEEEEEECCSSSSCE
T ss_pred eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCce-EcCCCCeEEEEEecccCCCcce
Confidence 7899999999998876643 357999999998876655433 33333 677 9999997775 44666
Q ss_pred -eEEEEE
Q 014104 341 -VLRVLD 346 (430)
Q Consensus 341 -~i~vwd 346 (430)
.|.+||
T Consensus 335 ~~l~~~d 341 (723)
T 1xfd_A 335 YHITVSS 341 (723)
T ss_dssp EEEEEEC
T ss_pred eEEEEEe
Confidence 566777
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-20 Score=183.83 Aligned_cols=231 Identities=15% Similarity=0.103 Sum_probs=167.8
Q ss_pred ccceeEEEe-cCC-eEEEEeC-CCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEe---CCeEEEEE--c--
Q 014104 112 SVGVDQCRM-KRG-LILTGVG-DKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLI---GTRICIWR--R-- 179 (430)
Q Consensus 112 ~~~v~~~~~-~~~-~l~s~~~-dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~---~~~i~vwd--~-- 179 (430)
..+|.+++| +|| +||+++. ||+++||++.+++.......+ ..+..++|+|| +.++ +.. +....+|. .
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 446999998 677 8888877 999999999887766555444 35677889988 5555 332 34455554 4
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC----
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL---- 253 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d---- 253 (430)
.+....+....+ ....++++++.. +++.+.++.+.+||+.+++.......+ . .+++|+|+ +.+++++.+
T Consensus 100 ~g~~~~l~~~~~--~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQRLEAVKP--MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCEECTTSCS--BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccccccCCCC--ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCC
Confidence 333332222222 235688888876 444444455569999988776555433 3 78899976 788877776
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeeeeecCCCceEEEE-------
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG--YASCWDLRTMKSLWETRISPNVVYSLQ------- 324 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~------- 324 (430)
+.|++||+.+++.. .+.. +...+..++|+|||+.|+++..++ .|++||+.+++.. .+..|...+..+.
T Consensus 175 ~~i~~~d~~~g~~~-~l~~-~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDS-GEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEEEETTTCCCE-EECC-SSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred eEEEEEcCCCCCce-Eeec-CCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 78999999988765 5554 677899999999999999888888 8999999988877 6666665444332
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
.|+|||..+++++.|+.+++|++ |+..
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~ 278 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID--GERV 278 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence 18999988899999999999999 6544
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-20 Score=165.52 Aligned_cols=233 Identities=11% Similarity=-0.029 Sum_probs=170.9
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCC-CeeEEeeecC--CceeEEEEecCCCEEE-EEe----CCe
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-YKCVEEYSLP--NAASLVDFDFDESKIV-GLI----GTR 173 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~----~~~ 173 (430)
....+..|.+.|.+++| +++ +|++++ ++.|.+||+.+ ++.......+ ..+..++|+|+++.++ +.. ...
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSA 111 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence 44567789999999999 566 777766 88999999999 8877666554 4456699999999999 442 244
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCC-CeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYS-RKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
|..++..++.......... .....+.+++..++ ++..++.+.+|++.. +.....+..+...+.+++|+|+ +.++.+
T Consensus 112 l~~~~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 190 (297)
T 2ojh_A 112 IYLLPSTGGTPRLMTKNLP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFN 190 (297)
T ss_dssp EEEEETTCCCCEECCSSSS-EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCceEEeecCCC-ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEE
Confidence 5555555554322222222 34456666777665 788899999998532 2344566667889999999986 666655
Q ss_pred e-CCCeEEEEeCC-CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----------CeEEEEeCCCCce--eeeeec
Q 014104 251 S-SLGSIAISGLS-SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----------GYASCWDLRTMKS--LWETRI 315 (430)
Q Consensus 251 ~-~dg~i~vwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~--~~~~~~ 315 (430)
+ .++.+.+|++. .+.....+.. +...+..++|+|+|++|++++.+ +.|++||+.+++. +..+.+
T Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 269 (297)
T 2ojh_A 191 SSRTGQMQIWRVRVDGSSVERITD-SAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFG 269 (297)
T ss_dssp ECTTSSCEEEEEETTSSCEEECCC-CSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEE
T ss_pred ecCCCCccEEEECCCCCCcEEEec-CCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCC
Confidence 5 58999999886 4555666655 56688999999999999887765 5699999998765 444557
Q ss_pred CCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 316 SPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
|...+..+. |+|++++|++++.+.
T Consensus 270 ~~~~~~~~~-~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 270 GQGTMNSPN-WSPDGDEFAYVRYFP 293 (297)
T ss_dssp STTTSCSCC-BCTTSSEEEEEEECC
T ss_pred CCcccccce-ECCCCCEEEEEEecc
Confidence 788899998 999999998887653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-18 Score=158.16 Aligned_cols=258 Identities=14% Similarity=0.132 Sum_probs=168.7
Q ss_pred CCCeEEEEecC--CCeeEE--eeecCCceeEEEEecCCCEEEEEe---CCeEEEEEcCCCcccc-cC--CCCceeeeeEE
Q 014104 130 GDKVMRLWSLE--GYKCVE--EYSLPNAASLVDFDFDESKIVGLI---GTRICIWRRNGLRSVF-PS--REGTFMKGLCM 199 (430)
Q Consensus 130 ~dg~i~iwd~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~-~~--~~~~~~~~~~~ 199 (430)
.++.|.+|+++ +++... ..........++|+|+++.++++. ++.|.+|+++++.... .. ........+++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 35667777654 555433 333445667799999999333444 5899999997765321 11 11223345677
Q ss_pred EEcCCceEEEe-cCCeEEEEECCC-C--eeeEEeecC---------CCCeEEEEecCC-CEEEEEeCCCeEEEEeCC-CC
Q 014104 200 RYFDPEAVVGC-EDGTARVFDMYS-R--KCSQIIRMH---------CAPVTSLSLSED-QLIISGSSLGSIAISGLS-SD 264 (430)
Q Consensus 200 ~~~~~~l~~~~-~dg~i~vwd~~~-~--~~~~~~~~~---------~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~-~~ 264 (430)
.+++..+++++ .++.|.+||+.. + +.+..+... ...+.+++|+|+ +++++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 78888787777 789999999953 3 233333211 124888999986 666666678899999998 55
Q ss_pred cee--EEEecCCCCCeEEEEEecCCCEEEE-EeCCCeEEEEeCCC--Cce--eeeeecCC------CceEEEEEeeCCCC
Q 014104 265 QRV--ATLRSTDCTGIKTLCYNPCSRLVFA-GTTAGYASCWDLRT--MKS--LWETRISP------NVVYSLQHLQNDTS 331 (430)
Q Consensus 265 ~~~--~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~i~d~~~--~~~--~~~~~~~~------~~v~~l~~~s~~~~ 331 (430)
+.. ..+.......+..++|+|+|+++++ +..++.|.+|++.. ++. +..+.... ..+..++ |+|+|+
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~-~spdG~ 252 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR-LSHDGH 252 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE-ECTTSC
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE-ECCCCC
Confidence 433 2223223347889999999996665 56688999999874 432 22232222 3578888 999999
Q ss_pred eE-EEEcCCCeEEEEEcCC-C--ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--c
Q 014104 332 TL-VVGGIDGVLRVLDQNT-G--EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--G 405 (430)
Q Consensus 332 ~l-~s~~~dg~i~vwd~~~-~--~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~ 405 (430)
+| ++...++.|.+||+.. + +.+..+..+ ...+.+++| |
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~------------------------------------~~~~~~~~~spd 296 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTE------------------------------------GDFPRDFDLDPT 296 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECS------------------------------------SSCCCEEEECTT
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecC------------------------------------CCCcCeEEECCC
Confidence 87 4555689999999873 2 233333321 224567777 5
Q ss_pred CeEEEEeeC-CCeEEEEEec
Q 014104 406 MKKVVTTHN-SKYIRLWKFN 424 (430)
Q Consensus 406 ~~~l~t~~~-Dg~v~vw~~~ 424 (430)
|++|++++. ++.|.+|+++
T Consensus 297 g~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 297 EAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEcCCCcEEEEEEe
Confidence 777777665 5899999665
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-19 Score=167.52 Aligned_cols=140 Identities=12% Similarity=0.151 Sum_probs=110.6
Q ss_pred EEecCCeEEEEECCCC--------e---eeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC
Q 014104 208 VGCEDGTARVFDMYSR--------K---CSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD 274 (430)
Q Consensus 208 ~~~~dg~i~vwd~~~~--------~---~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 274 (430)
+|+.|+.|++||+.++ + .+..+.+|...|.+++|+|+ .++++++.||+|++||++++..+....+ |
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~ 191 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-S 191 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-G
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-C
Confidence 5667888888887554 1 24556678999999999974 6899999999999999999877666655 6
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-------CCceEEEEEeeCCCCeEEEEc-CCC------
Q 014104 275 CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-------PNVVYSLQHLQNDTSTLVVGG-IDG------ 340 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~v~~l~~~s~~~~~l~s~~-~dg------ 340 (430)
...|.+++|+|+|++|++|+.||.|++||++ ++....+..| ...|.++. |++++.++++.+ .||
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~-w~~~~~~l~~~~~~dg~~~~~~ 269 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVL-WIGTYVFAIVYAAADGTLETSP 269 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEE-EEETTEEEEEEEETTCCSSSCC
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEE-EecCceEEEEEccCCCccCCCC
Confidence 7799999999999999999999999999998 5555554433 23789998 888887775433 443
Q ss_pred eEEEEEcCCC
Q 014104 341 VLRVLDQNTG 350 (430)
Q Consensus 341 ~i~vwd~~~~ 350 (430)
.+++|++...
T Consensus 270 ~v~i~~l~~~ 279 (434)
T 2oit_A 270 DVVMALLPKK 279 (434)
T ss_dssp EEEEEECCCT
T ss_pred ceEEEEeccC
Confidence 3899999854
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-17 Score=151.85 Aligned_cols=262 Identities=9% Similarity=0.099 Sum_probs=168.0
Q ss_pred eEEEEe----CCCeEEEEec--CCCeeE--EeeecCCceeEEEEecCCCEEE-EEeC----CeEEEEEcCC--Ccc-ccc
Q 014104 124 LILTGV----GDKVMRLWSL--EGYKCV--EEYSLPNAASLVDFDFDESKIV-GLIG----TRICIWRRNG--LRS-VFP 187 (430)
Q Consensus 124 ~l~s~~----~dg~i~iwd~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~-~~~~----~~i~vwd~~~--~~~-~~~ 187 (430)
+++.|+ .++.|.+|++ .+++.. ... .......++|+|+++.|+ ++.+ +.+.+|+++. ++. ...
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 556664 4578999966 455443 333 345566799999999888 4443 7999999875 332 111
Q ss_pred CCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCeeeEEe---ecC-----------CCCeEEEEecCC-CEEEE-E
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQII---RMH-----------CAPVTSLSLSED-QLIIS-G 250 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~---~~~-----------~~~i~~~~~~~~-~~l~~-~ 250 (430)
...........+..++..+++++ .++.|.+|++.....+..+ ..+ ...+.+++|+|+ +++++ .
T Consensus 94 ~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 173 (361)
T 3scy_A 94 TQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD 173 (361)
T ss_dssp EEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE
T ss_pred EeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe
Confidence 11111112233444566566665 6789999999754332211 111 223578999987 54544 4
Q ss_pred eCCCeEEEEeCCCCce------e------EEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCce--eeeee-
Q 014104 251 SSLGSIAISGLSSDQR------V------ATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKS--LWETR- 314 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~--~~~~~- 314 (430)
..++.|.+|++..... + ..........+..++|+|+|+++++++ .++.|.+||+.+++. +..+.
T Consensus 174 ~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~ 253 (361)
T 3scy_A 174 LGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA 253 (361)
T ss_dssp TTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES
T ss_pred CCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec
Confidence 4588999998875431 1 222322455789999999999888777 689999999987654 22222
Q ss_pred --cCCCceEEEEEeeCCCCeEEEEcC--CCeEEEEEcC--CCce--EEEEEeccCcceeeeccCCceEEEeecccccCCc
Q 014104 315 --ISPNVVYSLQHLQNDTSTLVVGGI--DGVLRVLDQN--TGEV--LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386 (430)
Q Consensus 315 --~~~~~v~~l~~~s~~~~~l~s~~~--dg~i~vwd~~--~~~~--~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~ 386 (430)
.+......++ |+|+|++|+++.. ++.|.+|++. +++. +..+.. +
T Consensus 254 ~~~~~~~~~~i~-~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g------------------------- 305 (361)
T 3scy_A 254 DTVNAQGSGDIH-LSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--G------------------------- 305 (361)
T ss_dssp CSSCCCCEEEEE-ECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--S-------------------------
T ss_pred CCCCCCCcccEE-ECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--C-------------------------
Confidence 2334567888 9999999876665 4899999996 4542 333322 1
Q ss_pred ccccCCCCCCCCeeEEEE--cCeEEEEee-CCCeEEEEEec
Q 014104 387 CIDRIPKTIRPPITCLAV--GMKKVVTTH-NSKYIRLWKFN 424 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~--~~~~l~t~~-~Dg~v~vw~~~ 424 (430)
..+.+++| ||++|++++ .++.|.+|+++
T Consensus 306 ----------~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 ----------IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ----------SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ----------CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 24556777 577777776 67999998775
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=182.50 Aligned_cols=233 Identities=12% Similarity=-0.007 Sum_probs=165.2
Q ss_pred EEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc----eeEEEEecCCCEEE-EEe---------CCeEEEEEcCC
Q 014104 117 QCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA----ASLVDFDFDESKIV-GLI---------GTRICIWRRNG 181 (430)
Q Consensus 117 ~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~-~~~---------~~~i~vwd~~~ 181 (430)
.+.| +++.++..+.|++|++||+.+++....+.++.. +..++|+|||+.|+ ++. ++.|++||+++
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~ 99 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN 99 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence 5667 567555556799999999999988777765433 77899999999998 444 58999999998
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe-ecCCCCe-----------------EEEEecC
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPV-----------------TSLSLSE 243 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i-----------------~~~~~~~ 243 (430)
++.+.............+++++..|+.+. ++.|++||+.+++..... .++...| .+++|+|
T Consensus 100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP 178 (719)
T 1z68_A 100 GEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP 178 (719)
T ss_dssp TEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred CccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC
Confidence 87521011112345578888888888875 789999999888765433 2332222 4899998
Q ss_pred C-CEEEEEeCCC----------------------------------eEEEEeCCCCcee--EEEe-----cCCCCCeEEE
Q 014104 244 D-QLIISGSSLG----------------------------------SIAISGLSSDQRV--ATLR-----STDCTGIKTL 281 (430)
Q Consensus 244 ~-~~l~~~~~dg----------------------------------~i~vwd~~~~~~~--~~~~-----~~~~~~v~~~ 281 (430)
+ +.|++++.|. .|++||+.+++.. ..+. ..+...+..+
T Consensus 179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (719)
T 1z68_A 179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL 258 (719)
T ss_dssp TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence 7 7888877542 7899999987653 1221 1256678999
Q ss_pred EEecCCCEEEEEeCC----CeEEEEe----CCCCceeeee----ecCCCceE-----EEEEeeCCCCeEEE--EcCCC--
Q 014104 282 CYNPCSRLVFAGTTA----GYASCWD----LRTMKSLWET----RISPNVVY-----SLQHLQNDTSTLVV--GGIDG-- 340 (430)
Q Consensus 282 ~~~~~~~~l~~~~~d----g~i~i~d----~~~~~~~~~~----~~~~~~v~-----~l~~~s~~~~~l~s--~~~dg-- 340 (430)
+|+||++++++.... ..|.+|| +.+++....+ ..|...+. .+. |+|||+.++. +..+|
T Consensus 259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~spdg~~l~~~~~~~~g~~ 337 (719)
T 1z68_A 259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPV-FSYDAISYYKIFSDKDGYK 337 (719)
T ss_dssp EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCE-ECTTSSCEEEEEECTTSCE
T ss_pred EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccE-ECCCCCeEEEEEEccCCce
Confidence 999998877764432 2488999 8887766555 46666666 677 9999996654 44555
Q ss_pred eEEEEEcCCCc
Q 014104 341 VLRVLDQNTGE 351 (430)
Q Consensus 341 ~i~vwd~~~~~ 351 (430)
.|.+||+.+++
T Consensus 338 ~l~~~~~~~~~ 348 (719)
T 1z68_A 338 HIHYIKDTVEN 348 (719)
T ss_dssp EEEEESSCSTT
T ss_pred EEEEEECCCCc
Confidence 57777877665
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-19 Score=162.75 Aligned_cols=226 Identities=10% Similarity=0.018 Sum_probs=160.2
Q ss_pred EEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCc--eeeeeEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCC
Q 014104 158 DFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGT--FMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 158 ~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (430)
++++++..++ ++.++.|.+||+.+++.......+. ....+++.+++..+ +++..++.|.+||+.+++.+..+....
T Consensus 6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~ 85 (349)
T 1jmx_B 6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSS 85 (349)
T ss_dssp CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCC
T ss_pred cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccc
Confidence 4566777777 7789999999999887432222122 23345666666654 455678999999999998887776332
Q ss_pred ------CCeEEEEecCC-CEEEEEeCC------------CeEEEEeCCCCce---eEEEecCCCCCeEEEEEecCCCEEE
Q 014104 234 ------APVTSLSLSED-QLIISGSSL------------GSIAISGLSSDQR---VATLRSTDCTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 234 ------~~i~~~~~~~~-~~l~~~~~d------------g~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~ 291 (430)
..+..++|+|+ +++++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+|+ ++
T Consensus 86 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 86 VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSC-EE
T ss_pred ccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--CCCcccceeECCCCc-EE
Confidence 23778999976 678887755 8999999988443 34444 344688999999999 66
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCC------------------------------------------------------
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRISP------------------------------------------------------ 317 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~~------------------------------------------------------ 317 (430)
+++. .|.+||+.+++.+..+..+.
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 6544 39999999887766554331
Q ss_pred --------------CceEEEEEeeC-CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccc
Q 014104 318 --------------NVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRL 382 (430)
Q Consensus 318 --------------~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~ 382 (430)
..+.+++ ++| ++++++++ ++.|.+||+.+++.+..+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~-~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~----------------------- 294 (349)
T 1jmx_B 241 KTGKTHTQEFADLTELYFTGL-RSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD----------------------- 294 (349)
T ss_dssp TTCCEEEEEEEECSSCEEEEE-ECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-----------------------
T ss_pred cCCcEEecccccCCCcceeeE-ecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-----------------------
Confidence 1233444 668 88888777 778888888888777766531
Q ss_pred cCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 383 SAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 383 ~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+.+++| ++++|++++.++.|++||+++++.
T Consensus 295 --------------~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~ 328 (349)
T 1jmx_B 295 --------------HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 328 (349)
T ss_dssp --------------SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred --------------CCccceEECCCCCEEEEecCCCeEEEEeccccce
Confidence 13456666 577787788899999999987753
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-18 Score=153.23 Aligned_cols=247 Identities=10% Similarity=0.100 Sum_probs=165.4
Q ss_pred EEeccccceeEEEe-cCCeEEEEeC---CCeEEEEecCCCe--eEEeee-cCCceeEEEEecCCCEEE-EE-eCCeEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRGLILTGVG---DKVMRLWSLEGYK--CVEEYS-LPNAASLVDFDFDESKIV-GL-IGTRICIW 177 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~~l~s~~~---dg~i~iwd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~l~-~~-~~~~i~vw 177 (430)
....+...+..++| +++.|++++. ++.|.+||+.+++ .+..+. ....+..++|+|+++.|+ ++ .++.+.+|
T Consensus 34 ~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 34 GLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 34455667778888 5665555544 6899999998766 333333 345667799999999888 54 57899999
Q ss_pred EcCC-Cc--ccccC-CC---------CceeeeeEEEEcCCceEEEecCCeEEEEECC-CCeee--EEeecC-CCCeEEEE
Q 014104 178 RRNG-LR--SVFPS-RE---------GTFMKGLCMRYFDPEAVVGCEDGTARVFDMY-SRKCS--QIIRMH-CAPVTSLS 240 (430)
Q Consensus 178 d~~~-~~--~~~~~-~~---------~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~--~~~~~~-~~~i~~~~ 240 (430)
++.. +. .+... .. ......+++.+++..+++...++.|.+||+. +++.. ..+..+ ...+..++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 9963 22 11111 11 1113346666677745555668899999998 45432 222222 23678899
Q ss_pred ecCC-CEEE-EEeCCCeEEEEeCCC--Cce--eEEEecCCC-----CCeEEEEEecCCCEEE-EEeCCCeEEEEeCCC--
Q 014104 241 LSED-QLII-SGSSLGSIAISGLSS--DQR--VATLRSTDC-----TGIKTLCYNPCSRLVF-AGTTAGYASCWDLRT-- 306 (430)
Q Consensus 241 ~~~~-~~l~-~~~~dg~i~vwd~~~--~~~--~~~~~~~~~-----~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-- 306 (430)
|+|+ ++++ ++..++.|.+|++.. ++. +..+..... ..+..++|+|+|++|+ +...++.|.+|++..
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 9987 5444 456788999999874 443 223332111 3588999999999875 555689999999973
Q ss_pred -CceeeeeecCCCceEEEEEeeCCCCeEEEEcC-CCeEEEE--EcCCCceEE
Q 014104 307 -MKSLWETRISPNVVYSLQHLQNDTSTLVVGGI-DGVLRVL--DQNTGEVLS 354 (430)
Q Consensus 307 -~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~-dg~i~vw--d~~~~~~~~ 354 (430)
.+.+..+..+...+..++ |+|+|++|++++. ++.|.+| |..+|+...
T Consensus 274 ~~~~~~~~~~~~~~~~~~~-~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDFD-LDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp CEEEEEEEECSSSCCCEEE-ECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cEEEeEEEecCCCCcCeEE-ECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 245555666666788998 9999998888775 4899999 555676543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=173.39 Aligned_cols=200 Identities=13% Similarity=0.010 Sum_probs=148.1
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCC----------eeeE-----EeecCCCCeEEEEecCC-CEEE----EEeCC
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSR----------KCSQ-----IIRMHCAPVTSLSLSED-QLII----SGSSL 253 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~-----~~~~~~~~i~~~~~~~~-~~l~----~~~~d 253 (430)
...+++...+..+++++.++ +++|+.... ..+. ....+.+.|.+++|+|+ ++++ +|+.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 34566666677788888887 888764211 0010 11135668999999976 7787 78899
Q ss_pred CeEEEEeCCCC--------ce---eEEEecCCCCCeEEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceE
Q 014104 254 GSIAISGLSSD--------QR---VATLRSTDCTGIKTLCYNPC-SRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY 321 (430)
Q Consensus 254 g~i~vwd~~~~--------~~---~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~ 321 (430)
+.|++||+.++ +. +..+.+ |...|.+++|+|+ +.+|++++.||+|++||++++..+....+|...|.
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~ 196 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKD-AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT 196 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCS-GGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCC-CCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCcee
Confidence 99999998754 22 233333 6789999999998 78999999999999999999877767777889999
Q ss_pred EEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE
Q 014104 322 SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC 401 (430)
Q Consensus 322 ~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 401 (430)
+++ |+|+|++|++|+.||.|++||++ ++....+..+.. ....|...|.+
T Consensus 197 ~v~-wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~-----------------------------~~~~~~~~v~~ 245 (434)
T 2oit_A 197 SVC-WSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF-----------------------------YESDHPVRVLD 245 (434)
T ss_dssp EEE-ECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT-----------------------------CCTTSCEEEEE
T ss_pred EEE-EcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc-----------------------------cCCCCceeEEE
Confidence 999 99999999999999999999998 666666654322 01124457889
Q ss_pred EEEc--CeEEEE-eeCCC------eEEEEEecCC
Q 014104 402 LAVG--MKKVVT-THNSK------YIRLWKFNYS 426 (430)
Q Consensus 402 v~~~--~~~l~t-~~~Dg------~v~vw~~~~~ 426 (430)
++|+ +.++++ ++.|| .+++|++...
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 9994 455533 44454 3889999754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.2e-19 Score=176.57 Aligned_cols=270 Identities=6% Similarity=-0.030 Sum_probs=184.5
Q ss_pred eEEEEecccc---ceeEEEe-cCC-eEEEEeCC---------CeEEEEecCCCeeEEeeecC----CceeEEEEecCCCE
Q 014104 104 DIDQWKAHSV---GVDQCRM-KRG-LILTGVGD---------KVMRLWSLEGYKCVEEYSLP----NAASLVDFDFDESK 165 (430)
Q Consensus 104 ~~~~l~~h~~---~v~~~~~-~~~-~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 165 (430)
....+.+|.. .|.+++| +|| +|++++.+ +.+.+||+.+++. ..+... ..+..++|+|||+.
T Consensus 49 ~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~ 127 (723)
T 1xfd_A 49 STVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ 127 (723)
T ss_dssp CEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC
T ss_pred EEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCE
Confidence 4456666665 4899999 566 88888764 7888999998876 333322 12567899999999
Q ss_pred EEEEeCCeEEEEEcCCCcccc--cCCCCce-----------------eeeeEEEEcCCceEEEecCC-------------
Q 014104 166 IVGLIGTRICIWRRNGLRSVF--PSREGTF-----------------MKGLCMRYFDPEAVVGCEDG------------- 213 (430)
Q Consensus 166 l~~~~~~~i~vwd~~~~~~~~--~~~~~~~-----------------~~~~~~~~~~~~l~~~~~dg------------- 213 (430)
|+...++.|++||+.+++... ....... ...+.|++++..|++++.++
T Consensus 128 la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 128 LIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp EEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred EEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence 996667999999999876432 2111111 13477778888888877553
Q ss_pred ---------------------eEEEEECCCCeeeEEeecC------CCCeEEEEecCC-CEEEEEeC----CCeEEEEeC
Q 014104 214 ---------------------TARVFDMYSRKCSQIIRMH------CAPVTSLSLSED-QLIISGSS----LGSIAISGL 261 (430)
Q Consensus 214 ---------------------~i~vwd~~~~~~~~~~~~~------~~~i~~~~~~~~-~~l~~~~~----dg~i~vwd~ 261 (430)
.|++||+.+++....+..+ ...+..++|+|+ +++++.+. +..|.+||+
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 287 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDA 287 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEET
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeC
Confidence 8999999988865666544 567899999987 55555532 358999999
Q ss_pred CCCceeEEEecCCCCCe----EEEEEecCCCEEEE--EeCCC------eEEEEe-CCCCce--eeeeecCCCceEE-EEE
Q 014104 262 SSDQRVATLRSTDCTGI----KTLCYNPCSRLVFA--GTTAG------YASCWD-LRTMKS--LWETRISPNVVYS-LQH 325 (430)
Q Consensus 262 ~~~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~--~~~dg------~i~i~d-~~~~~~--~~~~~~~~~~v~~-l~~ 325 (430)
.+++....+...+...+ ..++|+|+|+.|+. +..++ .|++|| ..+++. ...+..+...+.. +.
T Consensus 288 ~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~- 366 (723)
T 1xfd_A 288 TTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA- 366 (723)
T ss_dssp TTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE-
T ss_pred CCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE-
Confidence 99987766654344443 37899999997764 45666 577788 344441 4455544444554 56
Q ss_pred eeCCCCeEEEEcCC---CeEEEEEcCCCc--eEEEEEe---ccCcceeeeccCCceEE
Q 014104 326 LQNDTSTLVVGGID---GVLRVLDQNTGE--VLSRCVM---DIGSASSSSNKVSGVIE 375 (430)
Q Consensus 326 ~s~~~~~l~s~~~d---g~i~vwd~~~~~--~~~~~~~---~~~~~~~~~~s~d~~v~ 375 (430)
|+|+|+.|+..+.+ +.+++|++.... ....+.. +...+..+++|+||...
T Consensus 367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l 424 (723)
T 1xfd_A 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFF 424 (723)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEE
T ss_pred EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEE
Confidence 99999999766554 789999986432 2333332 34455667788887644
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-16 Score=145.24 Aligned_cols=240 Identities=8% Similarity=0.077 Sum_probs=158.7
Q ss_pred cccceeEEEe-cCC-eEEEEeCC----CeEEEEecCC--Cee--EEeeecC-CceeEEEEecCCCEEE-EE-eCCeEEEE
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGD----KVMRLWSLEG--YKC--VEEYSLP-NAASLVDFDFDESKIV-GL-IGTRICIW 177 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~d----g~i~iwd~~~--~~~--~~~~~~~-~~~~~~~~~~~~~~l~-~~-~~~~i~vw 177 (430)
|...+..++| +++ +|++++.+ +.|.+|++.. ++. +.....+ .....+++ +++.++ +. .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 6667778888 566 78888875 8999998865 443 3333322 33444555 888777 33 47899999
Q ss_pred EcCCCccccc-----CCCC----------ceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCee------e-------EE
Q 014104 178 RRNGLRSVFP-----SREG----------TFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKC------S-------QI 228 (430)
Q Consensus 178 d~~~~~~~~~-----~~~~----------~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~------~-------~~ 228 (430)
++.....+.. .+.+ .....+++.+++..+++++ .++.|.+|++..... + ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 9975432111 0111 1113466777777655544 588999998865431 1 11
Q ss_pred eecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEeCCCCce--eEEEec--CCCCCeEEEEEecCCCEEEEEeCC--CeEE
Q 014104 229 IRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSSDQR--VATLRS--TDCTGIKTLCYNPCSRLVFAGTTA--GYAS 300 (430)
Q Consensus 229 ~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd~~~~~~--~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d--g~i~ 300 (430)
...+...+..++|+|+ +++++++ .++.|.+||+.+++. +..+.. .+...+..++|+|+|++|+++..+ +.|.
T Consensus 206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~ 285 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA 285 (361)
T ss_dssp ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence 2233456789999987 6666665 689999999987754 333322 122457899999999998776654 8999
Q ss_pred EEeCC--CCc--eeeeeecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEc--CCCceEE
Q 014104 301 CWDLR--TMK--SLWETRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQ--NTGEVLS 354 (430)
Q Consensus 301 i~d~~--~~~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~--~~~~~~~ 354 (430)
+|++. +++ .+..+.. ...+..++ |+|+|++|++++ .++.|.+|++ .+++...
T Consensus 286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~-~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 286 IFKVDETNGTLTKVGYQLT-GIHPRNFI-ITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEEECTTTCCEEEEEEEEC-SSCCCEEE-ECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEcCCCCcEEEeeEecC-CCCCceEE-ECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 99986 344 3444444 45678888 999999888877 6789999654 4666543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=9.1e-17 Score=147.14 Aligned_cols=267 Identities=8% Similarity=0.082 Sum_probs=168.5
Q ss_pred eEEEEeCC--CeEEEEec--CCCeeEE--eee--cCCceeEEEEecCCCEEE-EEeCCeEEEEEcC-CCccccc-CC--C
Q 014104 124 LILTGVGD--KVMRLWSL--EGYKCVE--EYS--LPNAASLVDFDFDESKIV-GLIGTRICIWRRN-GLRSVFP-SR--E 190 (430)
Q Consensus 124 ~l~s~~~d--g~i~iwd~--~~~~~~~--~~~--~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~-~~~~~~~-~~--~ 190 (430)
+++.|+.. +.|.+|++ .+++... ... ....+..++++|++++|+ ++.+ .|.+|+++ +++.... .+ .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 45556553 56877764 5665432 222 223566799999999888 5555 99999997 6553211 11 1
Q ss_pred CceeeeeEEEEcCCc--eEEEe-------------cCCeEEEEECC-CCeeeEEee----cCCCCeEEEEecCC-CEEEE
Q 014104 191 GTFMKGLCMRYFDPE--AVVGC-------------EDGTARVFDMY-SRKCSQIIR----MHCAPVTSLSLSED-QLIIS 249 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~--l~~~~-------------~dg~i~vwd~~-~~~~~~~~~----~~~~~i~~~~~~~~-~~l~~ 249 (430)
+. ...+++.+++.. ++++. .+|.+.+|++. +++....+. .+...+.+++|+|+ +++++
T Consensus 83 g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~ 161 (365)
T 1jof_A 83 GH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS 161 (365)
T ss_dssp SS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred CC-CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence 11 222445555553 34442 68999999997 465544443 24567899999987 66766
Q ss_pred Ee-CCCeEEEEeCC-CCcee--EEEecC-CCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCC--CCcee---e---eee-
Q 014104 250 GS-SLGSIAISGLS-SDQRV--ATLRST-DCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLR--TMKSL---W---ETR- 314 (430)
Q Consensus 250 ~~-~dg~i~vwd~~-~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~--~~~~~---~---~~~- 314 (430)
+. .++.|.+||+. +++.. ..+... +...+..++|+|+|+++++++. ++.|.+|++. +++.. . .+.
T Consensus 162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 55 46899999998 67653 333321 3457999999999999987765 6899999765 45532 1 121
Q ss_pred ---cCCC------ceEEEEEeeCCCCeEEEEcCC-C-----eEEEEEcC-CCceEEE---EEeccCcceeeeccCCceEE
Q 014104 315 ---ISPN------VVYSLQHLQNDTSTLVVGGID-G-----VLRVLDQN-TGEVLSR---CVMDIGSASSSSNKVSGVIE 375 (430)
Q Consensus 315 ---~~~~------~v~~l~~~s~~~~~l~s~~~d-g-----~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~s~d~~v~ 375 (430)
+|.. .+..+++++|||++|++++.+ + .|.+|++. +++.... ...+....
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~------------ 309 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG------------ 309 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT------------
T ss_pred CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc------------
Confidence 1221 466775589999988876643 2 89999996 5665432 11111100
Q ss_pred EeecccccCCcccccCCCCCCCCeeEEEE---cCeEEEEeeC-CCeEEEEEecCC
Q 014104 376 RNEGRRLSAGCCIDRIPKTIRPPITCLAV---GMKKVVTTHN-SKYIRLWKFNYS 426 (430)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~---~~~~l~t~~~-Dg~v~vw~~~~~ 426 (430)
.-.+++. ||++|++++. ++.|++|+++.+
T Consensus 310 ----------------------~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 310 ----------------------HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ----------------------TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ----------------------ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 1112333 5778888776 489999998764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-18 Score=166.99 Aligned_cols=255 Identities=11% Similarity=-0.037 Sum_probs=167.1
Q ss_pred CceeEEEEecCCCEEE-EEe-CCeEEEEEcCCCcccccC-CCCceeeeeEEEEcCCceEEEec---CCeEEEEECCC---
Q 014104 152 NAASLVDFDFDESKIV-GLI-GTRICIWRRNGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCE---DGTARVFDMYS--- 222 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~-~~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~--- 222 (430)
..+..++|+|||+.|+ ++. ++.+.+|++++++..... +.........++++ ..+++++. +....+|.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~ 100 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRP 100 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTST
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCC
Confidence 3577799999999999 555 999999999777643222 22123333334433 23555554 44455554332
Q ss_pred CeeeEEeecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC----
Q 014104 223 RKCSQIIRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA---- 296 (430)
Q Consensus 223 ~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 296 (430)
+... .+... ..+...+|+|+ ..+++.+.++.+.+||+.+++....... +. .+++|+|||++|++++.+
T Consensus 101 g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~---~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 101 GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG---FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS---CEEEEEEETTEEEEEEEEETTE
T ss_pred Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC---ceEEECCCCCEEEEEEEcCCCC
Confidence 2222 33322 23345566644 4444444455556999998876655543 22 789999999999988776
Q ss_pred CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCC--eEEEEEcCCCceEEEEEeccCcceeee-------
Q 014104 297 GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG--VLRVLDQNTGEVLSRCVMDIGSASSSS------- 367 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~------- 367 (430)
+.|++||+.+++.. .+..|.+.+..++ |+|||+.|+++..++ .|++||+.+++.. .+..+...+..++
T Consensus 175 ~~i~~~d~~~g~~~-~l~~~~~~~~~~~-~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 175 VSLFTSNLSSGGLR-VFDSGEGSFSSAS-ISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEEEETTTCCCE-EECCSSCEEEEEE-ECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred eEEEEEcCCCCCce-EeecCCCccccce-ECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 78999999987754 6777888899998 999999999888888 8999999988877 5555555444445
Q ss_pred -ccCCceEE----------EeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCe-EEEEEecC
Q 014104 368 -NKVSGVIE----------RNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKY-IRLWKFNY 425 (430)
Q Consensus 368 -~s~d~~v~----------~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~-v~vw~~~~ 425 (430)
+++||.+. ++.. +.... .+...|.+++| +++.+++++.+.+ -.+|.++.
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~-----g~~~~----~~~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~ 313 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID-----GERVE----APQGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPS 313 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET-----TEEEC----CCSSEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE-----CCeec----cCCCceEEEEecCCEEEEEEcCCCCCCeEEEEcC
Confidence 67777443 3332 22221 23356777777 6888888877754 45555543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-17 Score=150.54 Aligned_cols=296 Identities=10% Similarity=-0.005 Sum_probs=183.6
Q ss_pred CEeEEEEeccccceeE-----EEe-cCC-eEEEEeC-CC--eEEEEecCCCeeEEeeecCCcee-EEEEecCCCEEE-EE
Q 014104 102 RIDIDQWKAHSVGVDQ-----CRM-KRG-LILTGVG-DK--VMRLWSLEGYKCVEEYSLPNAAS-LVDFDFDESKIV-GL 169 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~-----~~~-~~~-~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~-~~ 169 (430)
...+..+..|...... .+| ||| +|+.++. ++ .|.+||+.+++.......+.... ...|+||++.|+ +.
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 3456778888776665 677 567 7777776 66 48888999988877666654443 578999999999 67
Q ss_pred eCCeEEEEEcCCCccc--ccCCCCceeeeeEE--EEcCCceEE----------------------EecCCeEEEEECCCC
Q 014104 170 IGTRICIWRRNGLRSV--FPSREGTFMKGLCM--RYFDPEAVV----------------------GCEDGTARVFDMYSR 223 (430)
Q Consensus 170 ~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~--~~~~~~l~~----------------------~~~dg~i~vwd~~~~ 223 (430)
.++.+.+||+.+++.. ...+.. ......+ .+++..++. ...+..|.+||+.++
T Consensus 100 ~~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 100 DGRNLMRVDLATLEENVVYQVPAE-WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp TTTEEEEEETTTCCEEEEEECCTT-EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred CCCeEEEEECCCCcceeeeechhh-cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 7889999999988743 222222 2211222 223333432 123478999999988
Q ss_pred eeeEEeecCCCCeEEEEecC-C-CEEEEEeCC------CeEEEEeCCCCceeEEEecCCC-CCeEEEEEecCCCEEEEEe
Q 014104 224 KCSQIIRMHCAPVTSLSLSE-D-QLIISGSSL------GSIAISGLSSDQRVATLRSTDC-TGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 224 ~~~~~~~~~~~~i~~~~~~~-~-~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~ 294 (430)
+.. .+..+...+..+.|+| + +.++.+..+ ..|.++|+..++. ..+..... ..+....|+|+|+.|+..+
T Consensus 179 ~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 179 EST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp CEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred ceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEe
Confidence 654 4445667899999999 6 566665543 3788888775543 44443222 2578889999999776443
Q ss_pred C-CC----eEEEEeCCCCcee--eeeecCCCc---eEEEEEeeCCCCeEEEE---------cCCCeEEEEEcCCCceEEE
Q 014104 295 T-AG----YASCWDLRTMKSL--WETRISPNV---VYSLQHLQNDTSTLVVG---------GIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 295 ~-dg----~i~i~d~~~~~~~--~~~~~~~~~---v~~l~~~s~~~~~l~s~---------~~dg~i~vwd~~~~~~~~~ 355 (430)
. ++ .|++||+.+++.. ..+.++... ..... |+|||+.|+.. ..+..|++||+.+++. ..
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~-~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~ 334 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL-MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HR 334 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE-EEEEECCC------------CCCCEEEEEETTTTEE-EE
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe-EccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EE
Confidence 3 22 3999999988643 233321000 11124 88999988754 4567899999997764 44
Q ss_pred EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEE-eeCCCeEEEEEecCCC
Q 014104 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVT-THNSKYIRLWKFNYSD 427 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t-~~~Dg~v~vw~~~~~~ 427 (430)
+..+...... +.......+.+++| ||++|+. +..+|...||.++-.+
T Consensus 335 l~~~~~~~~~-------------------------~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 335 VARHDTSWKV-------------------------FEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp EEECCCCCCC-------------------------BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred eccccCcccc-------------------------cccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 4443320000 00000112444555 5666654 4468888888876543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.3e-18 Score=172.25 Aligned_cols=243 Identities=9% Similarity=0.006 Sum_probs=167.3
Q ss_pred eEEEEecccc---ceeEEEe-cCC-eEEEEeC---------CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEE
Q 014104 104 DIDQWKAHSV---GVDQCRM-KRG-LILTGVG---------DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL 169 (430)
Q Consensus 104 ~~~~l~~h~~---~v~~~~~-~~~-~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 169 (430)
....+.+|.. .+.+++| +|| +|++++. ++.|++||+.+++.+........+..++|+|||+.|+..
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~ 127 (719)
T 1z68_A 48 SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYV 127 (719)
T ss_dssp EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEE
T ss_pred EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEE
Confidence 3444455544 3889999 566 8888776 789999999998873222223456779999999999977
Q ss_pred eCCeEEEEEcCCCcccccCCCCc---e----------------eeeeEEEEcCCceEEEecCC-----------------
Q 014104 170 IGTRICIWRRNGLRSVFPSREGT---F----------------MKGLCMRYFDPEAVVGCEDG----------------- 213 (430)
Q Consensus 170 ~~~~i~vwd~~~~~~~~~~~~~~---~----------------~~~~~~~~~~~~l~~~~~dg----------------- 213 (430)
.++.|++|++.+++.......++ + .....|++++..|++++.|.
T Consensus 128 ~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 128 YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSC
T ss_pred ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCc
Confidence 79999999998876432221111 1 13578888888888887652
Q ss_pred -----------------eEEEEECCCCeee--------EEeecCCCCeEEEEecCCC-EEEEEeCC----CeEEEEe---
Q 014104 214 -----------------TARVFDMYSRKCS--------QIIRMHCAPVTSLSLSEDQ-LIISGSSL----GSIAISG--- 260 (430)
Q Consensus 214 -----------------~i~vwd~~~~~~~--------~~~~~~~~~i~~~~~~~~~-~l~~~~~d----g~i~vwd--- 260 (430)
.|++||+.+++.. ..+.+|...+..++|+|+. ++++.... ..|.+||
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~ 287 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFRE 287 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECS
T ss_pred cceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccC
Confidence 7899999888653 1233577889999999885 44443322 3588999
Q ss_pred -CCCCceeEEEe---cCCCCCeE-----EEEEecCCCEEEE--EeCCC--eEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 261 -LSSDQRVATLR---STDCTGIK-----TLCYNPCSRLVFA--GTTAG--YASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 261 -~~~~~~~~~~~---~~~~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
+.+++....+. ..+...+. .+.|+|+|+.++. ...+| .|.+||+.+++ ...+..+...+..+. ++
T Consensus 288 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~-~~ 365 (719)
T 1z68_A 288 DWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIF-RV 365 (719)
T ss_dssp SSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEE-EE
T ss_pred CCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEE-EE
Confidence 87776654442 22555565 7899999996554 44555 57778887666 445555666677777 55
Q ss_pred CCCCeEEEEcCC-----CeEEEEEcCC
Q 014104 328 NDTSTLVVGGID-----GVLRVLDQNT 349 (430)
Q Consensus 328 ~~~~~l~s~~~d-----g~i~vwd~~~ 349 (430)
+++.|+..+.+ +..++|.+..
T Consensus 366 -d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 366 -TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp -CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred -eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 77767666554 7888888753
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-16 Score=144.13 Aligned_cols=262 Identities=15% Similarity=0.090 Sum_probs=177.8
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecC-------CceeEEEEecCC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP-------NAASLVDFDFDE 163 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~ 163 (430)
..+.++..+..+ .+++ +++ +++++. .++.|.+||..+++.+.++..+ .....++++|||
T Consensus 42 ~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg 119 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDG 119 (361)
T ss_dssp CEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTS
T ss_pred eEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCC
Confidence 345667777666 7788 566 777765 3678999999999998888743 345569999999
Q ss_pred CEEE-EEe--CCeEEEEEcCCCccccc-CCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCC-CeeeEE------eec
Q 014104 164 SKIV-GLI--GTRICIWRRNGLRSVFP-SREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYS-RKCSQI------IRM 231 (430)
Q Consensus 164 ~~l~-~~~--~~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~-~~~~~~------~~~ 231 (430)
++|+ +.. ++.|.+||+++++.+.. ...+.. ....+.+.+ ..+++.+.||.+.+|+... ++.... +..
T Consensus 120 ~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 120 KFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp SEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred CEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 9998 443 57899999998875433 222211 112223333 3478889999999999865 554422 122
Q ss_pred CCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCce--eEEEecC------C---CCCeEEEEEecCCCEEEEEeC----
Q 014104 232 HCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQR--VATLRST------D---CTGIKTLCYNPCSRLVFAGTT---- 295 (430)
Q Consensus 232 ~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~------~---~~~v~~~~~~~~~~~l~~~~~---- 295 (430)
...++ .+.+.+ +..++..+.++.|.++|+..... ...+... . ......++|+|+++.++++..
T Consensus 199 ~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 199 KDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 22222 122233 34566667889999999875432 2222110 0 012223789999888887643
Q ss_pred -------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC--ceEEEEEeccCcceee
Q 014104 296 -------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG--EVLSRCVMDIGSASSS 366 (430)
Q Consensus 296 -------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~ 366 (430)
.+.|.+||+.+++.+.++..+. +.+++ ++|+|++|++++. +.|.+||..++ +.+.++......-..+
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia-~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMT-IDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV 353 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEE-EETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEE-ECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE
Confidence 3489999999999999998876 89998 9999999999887 99999999999 8888875444434455
Q ss_pred eccCCc
Q 014104 367 SNKVSG 372 (430)
Q Consensus 367 ~~s~d~ 372 (430)
+.++||
T Consensus 354 ~~~p~G 359 (361)
T 2oiz_A 354 QFHPVG 359 (361)
T ss_dssp EECCCS
T ss_pred EecCCC
Confidence 555555
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-15 Score=137.02 Aligned_cols=241 Identities=11% Similarity=0.034 Sum_probs=174.5
Q ss_pred ceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEE-eCCeEEEEEcCCCcccccCCCC
Q 014104 114 GVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL-IGTRICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 114 ~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~ 191 (430)
....+.+.++ .+++...++.|.+||..+++.+.++........+++++++..+++. .++.|.+||.++++.......+
T Consensus 45 ~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g 124 (328)
T 3dsm_A 45 VAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECP 124 (328)
T ss_dssp CEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred cceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence 3566777666 5555556799999999999999998766777889999998544455 6899999999988743221111
Q ss_pred c------eeeeeEEEEcCCceEEEe--cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC---------
Q 014104 192 T------FMKGLCMRYFDPEAVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL--------- 253 (430)
Q Consensus 192 ~------~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d--------- 253 (430)
. ....+++ .+..++++. .++.|.++|+.+++.+..+... .....+.++++ ++++++..+
T Consensus 125 ~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 125 DMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp TCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred CccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccC
Confidence 1 2222333 555666665 4889999999999988877643 34567888876 544444443
Q ss_pred -CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee--eecCCCceEEEEEeeC-C
Q 014104 254 -GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE--TRISPNVVYSLQHLQN-D 329 (430)
Q Consensus 254 -g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~s~-~ 329 (430)
+.|.++|..+++....+.......+..++++|+++.|+++.. .|.+||..+++.... +..+......++ ++| +
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~-vdp~~ 278 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLT-VNPNN 278 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEE-ECTTT
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEE-EcCCC
Confidence 789999999998887776422347899999999999988765 799999988775421 222235678888 998 4
Q ss_pred CCeEEEE----cCCCeEEEEEcCCCceEEEEEeccC
Q 014104 330 TSTLVVG----GIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 330 ~~~l~s~----~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+...++. ..++.|.+||.. |+.+.++.....
T Consensus 279 g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~ 313 (328)
T 3dsm_A 279 GEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII 313 (328)
T ss_dssp CCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES
T ss_pred CeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC
Confidence 5555555 578999999998 999998876433
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-16 Score=158.32 Aligned_cols=236 Identities=8% Similarity=-0.042 Sum_probs=161.3
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCc----eeE--EEEecCCCEEE-EEeC---------CeEE
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNA----ASL--VDFDFDESKIV-GLIG---------TRIC 175 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~--~~~~~~~~~l~-~~~~---------~~i~ 175 (430)
...++.| +++ +++++ |++|++||+.+++....+..+.. +.. ++|+|||+.|+ ++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 3567888 566 66665 99999999999988777776532 222 78999999998 4443 6678
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe-ecCCCCe-----------------E
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPV-----------------T 237 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i-----------------~ 237 (430)
+||+++++...............+++++..|+.+ .++.|++||+.+++..+.. .++...+ .
T Consensus 96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred EEECCCCcEEEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence 9999998754322222334567788888888877 4689999999888754422 2332222 3
Q ss_pred EEEecCC-CEEEEEeCCC------------------------------------eEEEEeCCC---Cc--eeEEEec---
Q 014104 238 SLSLSED-QLIISGSSLG------------------------------------SIAISGLSS---DQ--RVATLRS--- 272 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~~dg------------------------------------~i~vwd~~~---~~--~~~~~~~--- 272 (430)
.+.|+|+ +.|+.++.|. .|.+||+.+ ++ ....+..
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 5889987 6777764221 588899988 73 2233432
Q ss_pred --CCCCCeEEEEEecCCCEEEEEeC----CCeEEEEeCCCCc----ee--eee--ecCCCceE-----EEEEeeCCCCeE
Q 014104 273 --TDCTGIKTLCYNPCSRLVFAGTT----AGYASCWDLRTMK----SL--WET--RISPNVVY-----SLQHLQNDTSTL 333 (430)
Q Consensus 273 --~~~~~v~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~----~~--~~~--~~~~~~v~-----~l~~~s~~~~~l 333 (430)
.+...+..++|+|||+.++.... +..|.+||+.+++ +. ..+ ..|...+. ... |+|||+.+
T Consensus 255 ~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~-fspDG~~l 333 (740)
T 4a5s_A 255 MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH-FTLDGNSF 333 (740)
T ss_dssp HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE-ECTTSSEE
T ss_pred CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce-EcCCCCEE
Confidence 15557899999999997665433 3379999999887 22 222 44555544 667 99999987
Q ss_pred E-EEc-CC--CeEEEEEcCCCceE
Q 014104 334 V-VGG-ID--GVLRVLDQNTGEVL 353 (430)
Q Consensus 334 ~-s~~-~d--g~i~vwd~~~~~~~ 353 (430)
+ ..+ .+ ..|++||+.+++..
T Consensus 334 ~~~~s~~~G~~~l~~~~~~~~~~~ 357 (740)
T 4a5s_A 334 YKIISNEEGYRHICYFQIDKKDCT 357 (740)
T ss_dssp EEEEECTTSCEEEEEEETTCSSCE
T ss_pred EEEEEcCCCceEEEEEECCCCceE
Confidence 6 555 33 46888898866544
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-16 Score=144.53 Aligned_cols=238 Identities=9% Similarity=0.019 Sum_probs=161.7
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecC-CCeeEEeeec--CCceeEEEEecCCCE--EEEE--------------
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLE-GYKCVEEYSL--PNAASLVDFDFDESK--IVGL-------------- 169 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~-~~~~~~~~~~--~~~~~~~~~~~~~~~--l~~~-------------- 169 (430)
+...+..+++ +++ +|++++.+ .|.+|++. +++....... ++....++++|+++. ++.+
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3446778888 566 78888888 99999997 7776544332 233455889999995 3332
Q ss_pred eCCeEEEEEcCC-Cccc--ccC---CCCceeeeeEEEEcCCceEEEec-CCeEEEEECC-CCeee--EEee--cCCCCeE
Q 014104 170 IGTRICIWRRNG-LRSV--FPS---REGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMY-SRKCS--QIIR--MHCAPVT 237 (430)
Q Consensus 170 ~~~~i~vwd~~~-~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~-~~~~~--~~~~--~~~~~i~ 237 (430)
.++.+.+|+++. ++.. ... ........+.+.+++..++++.. ++.|.+||+. +++.. ..+. .|...+.
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~ 196 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence 588999999974 4321 111 12233445667777777776654 6899999998 67643 3333 2356789
Q ss_pred EEEecCC-CEEEEEe-CCCeEEEEeCC--CCcee---EEEec---C---CCC------CeEEEE-EecCCCEEEEEeCCC
Q 014104 238 SLSLSED-QLIISGS-SLGSIAISGLS--SDQRV---ATLRS---T---DCT------GIKTLC-YNPCSRLVFAGTTAG 297 (430)
Q Consensus 238 ~~~~~~~-~~l~~~~-~dg~i~vwd~~--~~~~~---~~~~~---~---~~~------~v~~~~-~~~~~~~l~~~~~dg 297 (430)
.++|+|+ +++++++ .++.|.+|++. +++.. ..+.. . +.. .+..++ |+|+|++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 9999987 6777666 47899999765 56543 22221 1 111 488999 999999988765432
Q ss_pred ------eEEEEeCC-CCceee---eeecCCCceEEEEEeeC---CCCeEEEEcCC-CeEEEEEcCCC
Q 014104 298 ------YASCWDLR-TMKSLW---ETRISPNVVYSLQHLQN---DTSTLVVGGID-GVLRVLDQNTG 350 (430)
Q Consensus 298 ------~i~i~d~~-~~~~~~---~~~~~~~~v~~l~~~s~---~~~~l~s~~~d-g~i~vwd~~~~ 350 (430)
.|.+|++. +++... ....+...+..++ ++| +|++|++++.+ +.|.+|+++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a-~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA-VSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC-EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce-ecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 565443 1333444566777 899 89999998864 89999998765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-15 Score=136.75 Aligned_cols=186 Identities=12% Similarity=0.072 Sum_probs=129.5
Q ss_pred eEEEecCCeEEEEECCCCe-eeEEe---------ecCCCCeEEEEecC-C-CEEEEEe-CCCeEEEEeCCCCceeEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRK-CSQII---------RMHCAPVTSLSLSE-D-QLIISGS-SLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~-~~~~~---------~~~~~~i~~~~~~~-~-~~l~~~~-~dg~i~vwd~~~~~~~~~~~~ 272 (430)
+++...++.|++||..... .+..+ ..+......++++| + .++++.+ .++.|++|| .+++.+..+..
T Consensus 105 ~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~ 183 (329)
T 3fvz_A 105 WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGE 183 (329)
T ss_dssp EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECE
T ss_pred EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEecc
Confidence 4444455666666653321 33333 23445688999997 5 5666665 689999999 56777777643
Q ss_pred CC---------CCCeEEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeeeee--cCCCceEEEEEeeC------CCCeEE
Q 014104 273 TD---------CTGIKTLCYNPC-SRLVFAGTTAGYASCWDLRTMKSLWETR--ISPNVVYSLQHLQN------DTSTLV 334 (430)
Q Consensus 273 ~~---------~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~s~------~~~~l~ 334 (430)
.. ...+..++++|+ ++++++...++.|++||..+++.+..+. .+...+..++ ++| +|+..+
T Consensus 184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~pg~~~~~~g~~~v 262 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAIS-YIPGFLFAVNGKPYF 262 (329)
T ss_dssp ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEE-EETTEEEEEECCCCT
T ss_pred CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceee-ecCCEEEEeCCCEEe
Confidence 11 124899999998 7777777788999999999888887774 3456788888 888 333333
Q ss_pred EEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEe
Q 014104 335 VGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTT 412 (430)
Q Consensus 335 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~ 412 (430)
+...+..|++||..+++.+..+.... .+.....+|++ +|..+++.
T Consensus 263 ~~~~~~~v~~~~~~~g~~~~~~~~~~---------------------------------~~~~~p~~ia~~~dG~lyvad 309 (329)
T 3fvz_A 263 GDQEPVQGFVMNFSSGEIIDVFKPVR---------------------------------KHFDMPHDIVASEDGTVYIGD 309 (329)
T ss_dssp TCSCCCCEEEEETTTCCEEEEECCSS---------------------------------SCCSSEEEEEECTTSEEEEEE
T ss_pred ccCCCcEEEEEEcCCCeEEEEEcCCC---------------------------------CccCCeeEEEECCCCCEEEEE
Confidence 33345589999999999888764211 23346778888 47788999
Q ss_pred eCCCeEEEEEecCC
Q 014104 413 HNSKYIRLWKFNYS 426 (430)
Q Consensus 413 ~~Dg~v~vw~~~~~ 426 (430)
..+++|++|+++..
T Consensus 310 ~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 310 AHTNTVWKFTLTEK 323 (329)
T ss_dssp SSSCCEEEEEEEEC
T ss_pred CCCCEEEEEeCCcc
Confidence 99999999998754
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.9e-16 Score=154.61 Aligned_cols=247 Identities=13% Similarity=-0.021 Sum_probs=166.4
Q ss_pred EEeccccceeEEEecCC--eEEEE--eCCCeEEEEecCCCeeEEeeecC-Ccee---------EEEEe--cCCCE-EEEE
Q 014104 107 QWKAHSVGVDQCRMKRG--LILTG--VGDKVMRLWSLEGYKCVEEYSLP-NAAS---------LVDFD--FDESK-IVGL 169 (430)
Q Consensus 107 ~l~~h~~~v~~~~~~~~--~l~s~--~~dg~i~iwd~~~~~~~~~~~~~-~~~~---------~~~~~--~~~~~-l~~~ 169 (430)
.+.+|...+..++++++ ++++. +.++...||....+.....+..+ ..+. ...++ ||++. |+.+
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~ 97 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT 97 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence 35678889999999755 55555 45889999985444434444433 2223 44455 99998 7744
Q ss_pred e--CCeEEEEEcC--C-Ccc-cccCC----CCceeeeeEEEEcCCceEEEecC----------CeEEEEECCC------C
Q 014104 170 I--GTRICIWRRN--G-LRS-VFPSR----EGTFMKGLCMRYFDPEAVVGCED----------GTARVFDMYS------R 223 (430)
Q Consensus 170 ~--~~~i~vwd~~--~-~~~-~~~~~----~~~~~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~------~ 223 (430)
. +..|.++++. + ++. .+... ........++++++..|++++.+ ..|++||+.+ +
T Consensus 98 ~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 177 (662)
T 3azo_A 98 HFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRS 177 (662)
T ss_dssp BTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGG
T ss_pred ECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCC
Confidence 4 4567777766 3 332 22221 22334567788888888888876 5899999987 5
Q ss_pred eeeEEee-cCCCCeEEEEecCC-CEEEEEeCC--------CeEEEEeCC-CC--ceeEEEecCCCCCeEEEEEecCCCEE
Q 014104 224 KCSQIIR-MHCAPVTSLSLSED-QLIISGSSL--------GSIAISGLS-SD--QRVATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 224 ~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~d--------g~i~vwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
+. ..+. .+...+..++|+|+ +.|+.++.+ ..|.+||+. ++ .....+...+...+..+.|+|||+++
T Consensus 178 ~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~ 256 (662)
T 3azo_A 178 AV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLI 256 (662)
T ss_dssp GS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEE
T ss_pred ce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEE
Confidence 44 4444 55667888999987 778777644 479999998 56 13344443356789999999999988
Q ss_pred EEEeCCC--eEEEEeCCCCceeeeeecCCCc--------eEEEEEeeCCCCeEEEEcCCCeEEEE--EcCCCceEEEEE
Q 014104 291 FAGTTAG--YASCWDLRTMKSLWETRISPNV--------VYSLQHLQNDTSTLVVGGIDGVLRVL--DQNTGEVLSRCV 357 (430)
Q Consensus 291 ~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~--------v~~l~~~s~~~~~l~s~~~dg~i~vw--d~~~~~~~~~~~ 357 (430)
+++..++ .|.+||+.+++.......+... +..++ ++|+++++++++. +.++|| |+.+++ +..+.
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~ 332 (662)
T 3azo_A 257 VATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFA-PLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA 332 (662)
T ss_dssp EEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEE-ECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC
T ss_pred EEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEe-EeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec
Confidence 8888888 6777777666654433333221 45676 8899999999998 999999 555444 44443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-14 Score=136.83 Aligned_cols=302 Identities=9% Similarity=0.021 Sum_probs=204.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcC--CCcccccCCCCceeeeeEEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN--GLRSVFPSREGTFMKGLCMR 200 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~--~~~~~~~~~~~~~~~~~~~~ 200 (430)
++++...+++|.++|..+++.+.++........+.++||+++++ ++.++.|.+||+. +.+.+.....+.....+.++
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s 248 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 248 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEc
Confidence 67777789999999999999999998776777899999999988 7778999999995 65544444444444556666
Q ss_pred ----EcCCceEEEe-cCCeEEEEECCCCeeeEEeecC----------CC-CeEEEEecCC--CEEEEEeCCCeEEEEeCC
Q 014104 201 ----YFDPEAVVGC-EDGTARVFDMYSRKCSQIIRMH----------CA-PVTSLSLSED--QLIISGSSLGSIAISGLS 262 (430)
Q Consensus 201 ----~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~----------~~-~i~~~~~~~~--~~l~~~~~dg~i~vwd~~ 262 (430)
+++..+++++ .+++|.++|..+.+.+..+... .. .+..+..+++ .+++....+|.|.++|..
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~ 328 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 328 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecC
Confidence 4677765555 5599999999999988776521 12 5777887764 466666778999999988
Q ss_pred CCceeEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCceeeeeec-----CCCceEEEEEeeCCCC-eEEE
Q 014104 263 SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKSLWETRI-----SPNVVYSLQHLQNDTS-TLVV 335 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~-----~~~~v~~l~~~s~~~~-~l~s 335 (430)
+.+.+....-........+.|+|+|++++++. .++.|.++|+.+++.+..+.. |.+ ....+++|++. ..++
T Consensus 329 ~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t 406 (567)
T 1qks_A 329 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWAT 406 (567)
T ss_dssp CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEE
T ss_pred CCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEe
Confidence 75433222211445678899999999887655 578899999999988776654 322 22334678755 4445
Q ss_pred Ec-CCCeEEEEEcCC-------CceEEEEEeccCcceeeeccCCc-----------------eEEEeecccccC---Ccc
Q 014104 336 GG-IDGVLRVLDQNT-------GEVLSRCVMDIGSASSSSNKVSG-----------------VIERNEGRRLSA---GCC 387 (430)
Q Consensus 336 ~~-~dg~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~s~d~-----------------~v~~~~~~~~~~---~~~ 387 (430)
+. .++.|.++|..+ .+.++++.....+-..+..++|+ .+.+++...+.. ...
T Consensus 407 ~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~ 486 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPE 486 (567)
T ss_dssp EBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCC
T ss_pred CCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCC
Confidence 53 568999999987 66888887654332333344444 333333333300 011
Q ss_pred cccCC-------CCCCCCeeEEEE--cCeEE-EEee----CCCeEEEEEecCCC
Q 014104 388 IDRIP-------KTIRPPITCLAV--GMKKV-VTTH----NSKYIRLWKFNYSD 427 (430)
Q Consensus 388 ~~~~~-------~~h~~~v~~v~~--~~~~l-~t~~----~Dg~v~vw~~~~~~ 427 (430)
+..++ ..-...+..+.| +|+.+ ++.. .++.|.|+|.++.+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~ 540 (567)
T 1qks_A 487 FKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLE 540 (567)
T ss_dssp EEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTE
T ss_pred cEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCce
Confidence 11111 011245778888 57665 4432 37999999988865
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-14 Score=126.94 Aligned_cols=237 Identities=7% Similarity=0.095 Sum_probs=163.6
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-------CceeEEEEecCCCEEEEEeCCeEEEEEcC
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-------NAASLVDFDFDESKIVGLIGTRICIWRRN 180 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~i~vwd~~ 180 (430)
+|-..+.++++ +++ ++++...++.|.+||.. ++.+..+... ..+..++++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~-------------------- 85 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVV-------------------- 85 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEE--------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEE--------------------
Confidence 45567888998 456 66666788999999977 5555544321 011122221
Q ss_pred CCcccccCCCCceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEEeec-CCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 181 GLRSVFPSREGTFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
..+..++++.. ++.|.+|| .+++.+..+.. +...+..++++++ +++++...++.|
T Consensus 86 --------------------~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 144 (286)
T 1q7f_A 86 --------------------RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRV 144 (286)
T ss_dssp --------------------TTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred --------------------cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEE
Confidence 11222344432 77888888 46666666542 3456889999976 666666778999
Q ss_pred EEEeCCCCceeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC--CCceEEEEEeeCCCCeE
Q 014104 257 AISGLSSDQRVATLRS-TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS--PNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~v~~l~~~s~~~~~l 333 (430)
.+||.. ++.+..+.. .+...+..++++|+|+++++...++.|++||.. ++.+..+..+ ...+.+++ ++++|+++
T Consensus 145 ~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~-~d~~G~l~ 221 (286)
T 1q7f_A 145 IIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVG-INSNGEIL 221 (286)
T ss_dssp EEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEE-ECTTCCEE
T ss_pred EEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEE-ECCCCCEE
Confidence 999964 666666642 134478999999999988887788999999975 5555555433 35688898 99999988
Q ss_pred EEEcCCC-eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE
Q 014104 334 VVGGIDG-VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV 410 (430)
Q Consensus 334 ~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~ 410 (430)
++...++ .|.+||. +++.+..+..+.. ...+.++++ +|++++
T Consensus 222 v~~~~~~~~i~~~~~-~g~~~~~~~~~~~----------------------------------~~~~~~i~~~~~g~l~v 266 (286)
T 1q7f_A 222 IADNHNNFNLTIFTQ-DGQLISALESKVK----------------------------------HAQCFDVALMDDGSVVL 266 (286)
T ss_dssp EEECSSSCEEEEECT-TSCEEEEEEESSC----------------------------------CSCEEEEEEETTTEEEE
T ss_pred EEeCCCCEEEEEECC-CCCEEEEEcccCC----------------------------------CCcceeEEECCCCcEEE
Confidence 8888776 9999995 4777777765322 123567777 477677
Q ss_pred EeeCCCeEEEEEecCCC
Q 014104 411 TTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 411 t~~~Dg~v~vw~~~~~~ 427 (430)
+ +.|++|++|++....
T Consensus 267 s-~~~~~v~v~~~~~~~ 282 (286)
T 1q7f_A 267 A-SKDYRLYIYRYVQLA 282 (286)
T ss_dssp E-ETTTEEEEEECSCCC
T ss_pred E-CCCCeEEEEEccccc
Confidence 6 679999999987654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-16 Score=142.83 Aligned_cols=243 Identities=12% Similarity=-0.023 Sum_probs=156.2
Q ss_pred eEEEEeccccc-----eeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeE-EEEecCCCEEE-EEeC
Q 014104 104 DIDQWKAHSVG-----VDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASL-VDFDFDESKIV-GLIG 171 (430)
Q Consensus 104 ~~~~l~~h~~~-----v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~~~~ 171 (430)
.+..+..+... +..++| ++| +|+.+... ..|.+||+.+++.......+..... ..|+||++.|+ ++.+
T Consensus 22 ~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~ 101 (396)
T 3c5m_A 22 KVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE 101 (396)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT
T ss_pred ceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC
Confidence 45566655443 677788 566 66655432 4788889998876655444433333 78999999998 7778
Q ss_pred CeEEEEEcCCCccc--ccCCCCceeee------------------eEEEEcCCceEEE-----ecCCeEEEEECCCCeee
Q 014104 172 TRICIWRRNGLRSV--FPSREGTFMKG------------------LCMRYFDPEAVVG-----CEDGTARVFDMYSRKCS 226 (430)
Q Consensus 172 ~~i~vwd~~~~~~~--~~~~~~~~~~~------------------~~~~~~~~~l~~~-----~~dg~i~vwd~~~~~~~ 226 (430)
+.+.+||+.+++.. ...+....... ..+.+++..++.+ ..+..|.+||+.+++..
T Consensus 102 ~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~ 181 (396)
T 3c5m_A 102 LNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE 181 (396)
T ss_dssp TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE
T ss_pred CcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE
Confidence 89999999887632 22222211010 1112223333322 35678999999888765
Q ss_pred EEeecCCCCeEEEEecC-C-CEEEEEeCC------CeEEEEeCCCCceeEEEecCC-CCCeEEEEEecCCCEEEEEeCC-
Q 014104 227 QIIRMHCAPVTSLSLSE-D-QLIISGSSL------GSIAISGLSSDQRVATLRSTD-CTGIKTLCYNPCSRLVFAGTTA- 296 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~-~-~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d- 296 (430)
... .+...+..+.|+| + ..++..+.+ ..|.+||+..++. ..+.... ...+..+.|+|+|+.|+.++.+
T Consensus 182 ~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 182 VIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred eec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 544 4667889999998 4 556555433 4688999876543 3333212 2257889999999987766543
Q ss_pred ----CeEEEEeCCCCceeeeeecCCCceEEEEEeeC-CCCeEEEEc----------------CCCeEEEEEcCCCce
Q 014104 297 ----GYASCWDLRTMKSLWETRISPNVVYSLQHLQN-DTSTLVVGG----------------IDGVLRVLDQNTGEV 352 (430)
Q Consensus 297 ----g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~-~~~~l~s~~----------------~dg~i~vwd~~~~~~ 352 (430)
+.|++||+.+++...... ... .. +. |+| +|+++++++ .++.|++||+.+++.
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~-~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMV-MPP-CS-HL-MSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEE-CCS-EE-EE-EECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred CCccceEEEEECCCCCeEEeee-CCC-CC-CC-ccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 459999998876543222 112 22 65 889 999888754 347899999987764
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-15 Score=130.59 Aligned_cols=234 Identities=11% Similarity=0.050 Sum_probs=174.2
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecCC--ceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCC--ceeee
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN--AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREG--TFMKG 196 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~--~~~~~ 196 (430)
|++.|++++.|+.|.+||.++|+.+.++..+. ....+.++|+|+.++ +.++.|..||. +++.+.....+ .....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 34489999999999999999999999998764 567789999999888 66888999999 66654433322 22333
Q ss_pred eEEEEcCCceEEEec-CCeEEEEECCCCeeeEEeecC------CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeE
Q 014104 197 LCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQIIRMH------CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA 268 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~------~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 268 (430)
....+++..+++.+. ++.|..+|. +|+.+..+... ......+.+.++ +++++...++.|..||.. |+.+.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w 159 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN 159 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence 444456666777776 788888886 78877766521 123444556654 889999999999999988 99999
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC------CceEEEEEeeCCCCeEEEEc--CC-
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP------NVVYSLQHLQNDTSTLVVGG--ID- 339 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~v~~l~~~s~~~~~l~s~~--~d- 339 (430)
++.. ...+.++.+.++|+.++++..++.|..+|..+++.+.++..+. ..+.++. ..++|..+++.. ..
T Consensus 160 ~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~-~~~~G~i~v~~~~g~~~ 236 (276)
T 3no2_A 160 SVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLF-PLQNGGLYICNWQGHDR 236 (276)
T ss_dssp EEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEE-ECTTSCEEEEEECTTCT
T ss_pred EEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccce-EcCCCCEEEEeccCccc
Confidence 9985 3456778889999999998888899999999999998886432 2367777 778998887773 11
Q ss_pred -----CeEEEEEc-CCCceEEEEEeccC
Q 014104 340 -----GVLRVLDQ-NTGEVLSRCVMDIG 361 (430)
Q Consensus 340 -----g~i~vwd~-~~~~~~~~~~~~~~ 361 (430)
+..+++++ .+|+.+.++.....
T Consensus 237 ~~~~~~~~~~~~~~~~g~~~W~~~~~~~ 264 (276)
T 3no2_A 237 EAGKGKHPQLVEIDSEGKVVWQLNDKVK 264 (276)
T ss_dssp TGGGSCCCSEEEECTTSBEEEEECCTTT
T ss_pred cccccCCceEEEECCCCCEEEEecCccc
Confidence 23456666 56888887765443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.8e-15 Score=137.95 Aligned_cols=254 Identities=9% Similarity=-0.008 Sum_probs=175.6
Q ss_pred CCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------eCCeEEEEEcCCCcccccC--C-----CC
Q 014104 130 GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVFPS--R-----EG 191 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~~~~i~vwd~~~~~~~~~~--~-----~~ 191 (430)
.|+.|.+||..+++.+..+...... .++++||+++++ +. .++.|.+||..+.+.+... . .+
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g 107 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGL 107 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBC
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccC
Confidence 4789999999999998888876555 899999999998 43 2567999999887643221 1 11
Q ss_pred ceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC--CEEEEEeCCCeEEEEeCCC-Cc
Q 014104 192 TFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED--QLIISGSSLGSIAISGLSS-DQ 265 (430)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~--~~l~~~~~dg~i~vwd~~~-~~ 265 (430)
.....+.+.+++..++++.. ++.|.+||+.+++.+.. +.. .+ ...+.+.|. ..+++.+.||.+.+|++.. ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 22345777788888888764 58999999999988877 542 22 233445553 5788889999999999865 55
Q ss_pred eeEEEec----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--eeeec------CC----CceEEEEEeeCC
Q 014104 266 RVATLRS----TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL--WETRI------SP----NVVYSLQHLQND 329 (430)
Q Consensus 266 ~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~------~~----~~v~~l~~~s~~ 329 (430)
....... ........+.++|++..++..+.++.|.++|+...... ..+.. +. .....++ ++|+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a-~~~d 264 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG-LHRA 264 (361)
T ss_dssp EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE-EETT
T ss_pred EeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE-EecC
Confidence 4422210 01112223445788888888888999999998754321 11110 00 1111256 8999
Q ss_pred CCeEEEEcC-----------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCC
Q 014104 330 TSTLVVGGI-----------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPP 398 (430)
Q Consensus 330 ~~~l~s~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~ 398 (430)
++.++++.. .+.|.+||+.+++.+.++..+.
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------------------------------------- 306 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------------------------------------- 306 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--------------------------------------
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--------------------------------------
Confidence 888876643 3589999999999999887522
Q ss_pred eeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 399 ITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 399 v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..+++| ||++|++++. +.|.+||..++
T Consensus 307 p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 307 ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 555666 5777887776 99999999987
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-15 Score=133.61 Aligned_cols=254 Identities=10% Similarity=-0.030 Sum_probs=174.7
Q ss_pred CCCeEEEEecCCCeeEEeeec-------CCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEE
Q 014104 130 GDKVMRLWSLEGYKCVEEYSL-------PNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMR 200 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 200 (430)
.+++|.++|.++++....+.. ......+.+ ++..+. ...++.|.+||.++++.+...........+++.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~--~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVI--RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEE--ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEE--ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEe
Confidence 388999999999987765521 122334555 344444 445789999999988754333223333445555
Q ss_pred EcCCceEEEe-cCCeEEEEECCCCeeeEEeecCC-----CCeEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeEEEec
Q 014104 201 YFDPEAVVGC-EDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISGS--SLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 201 ~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~ 272 (430)
+.+ .++++. .++.|.+||..+++....+.... .....+++ .++.++.+. .++.|.++|+.+++.+..+..
T Consensus 93 ~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 93 SDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp ETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 555 555555 78999999999998887776433 14456777 444444444 488999999999998888874
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCC----------CeEEEEeCCCCceeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCe
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTA----------GYASCWDLRTMKSLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
......++++|+|++++++..+ +.|.++|..+++....+.... .....++ ++|+++.|+++.. .
T Consensus 171 --g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la-~~~d~~~lyv~~~--~ 245 (328)
T 3dsm_A 171 --GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQ-LNGTRDTLYWINN--D 245 (328)
T ss_dssp --SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEE-ECTTSCEEEEESS--S
T ss_pred --CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEE-EecCCCEEEEEcc--E
Confidence 3456789999999977766554 789999999988776665432 3678898 9999999988765 8
Q ss_pred EEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEe----eC
Q 014104 342 LRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTT----HN 414 (430)
Q Consensus 342 i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~----~~ 414 (430)
|.+||+.+++....... ..+.....+++++ +..+++. ..
T Consensus 246 v~~~d~~t~~~~~~~~~----------------------------------~~~~~~p~gi~vdp~~g~lyva~~~~y~~ 291 (328)
T 3dsm_A 246 IWRMPVEADRVPVRPFL----------------------------------EFRDTKYYGLTVNPNNGEVYVADAIDYQQ 291 (328)
T ss_dssp EEEEETTCSSCCSSCSB----------------------------------CCCSSCEEEEEECTTTCCEEEEECTTSSS
T ss_pred EEEEECCCCceeeeeee----------------------------------cCCCCceEEEEEcCCCCeEEEEccccccc
Confidence 99999987765310000 0001346677773 4556666 67
Q ss_pred CCeEEEEEecCCC
Q 014104 415 SKYIRLWKFNYSD 427 (430)
Q Consensus 415 Dg~v~vw~~~~~~ 427 (430)
++.|.+||.+ ++
T Consensus 292 ~~~V~v~d~~-g~ 303 (328)
T 3dsm_A 292 QGIVYRYSPQ-GK 303 (328)
T ss_dssp EEEEEEECTT-CC
T ss_pred CCEEEEECCC-CC
Confidence 8899999987 54
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-15 Score=133.92 Aligned_cols=253 Identities=12% Similarity=0.026 Sum_probs=165.9
Q ss_pred ceeEEEecCC-eEEEE---------eCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC---C--eEEEE
Q 014104 114 GVDQCRMKRG-LILTG---------VGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---T--RICIW 177 (430)
Q Consensus 114 ~v~~~~~~~~-~l~s~---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---~--~i~vw 177 (430)
.+....+ +| +++.. +.++.|.+||+.+++... + ..+....|+|||+.|+ .+.+ + .|.+|
T Consensus 16 ~~~~~~~-dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l---~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~ 90 (347)
T 2gop_A 16 YLSDPRT-KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I---ENATMPRISPDGKKIAFMRANEEKKVSEIWVA 90 (347)
T ss_dssp EEEEEEE-ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E---ESCEEEEECTTSSEEEEEEEETTTTEEEEEEE
T ss_pred EcccceE-CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c---ccCCCeEECCCCCEEEEEEeccCCCcceEEEE
Confidence 3455566 55 54443 235789999999876543 3 3566789999999988 4432 3 37888
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEec---------------------------CCeEEEEECCCCeeeEEee
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE---------------------------DGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------------dg~i~vwd~~~~~~~~~~~ 230 (430)
++++++......... .....+++++..|+.++. ...|.+||+.+++.+..+.
T Consensus 91 ~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~ 169 (347)
T 2gop_A 91 DLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFE 169 (347)
T ss_dssp ETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEE
T ss_pred ECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeec
Confidence 888776432221122 455667777777777663 2579999999888745555
Q ss_pred cCCCCeEEEEecCCCEEEEEeCC---------CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----
Q 014104 231 MHCAPVTSLSLSEDQLIISGSSL---------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA----- 296 (430)
Q Consensus 231 ~~~~~i~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----- 296 (430)
. . .+..+.|+|+.+++++..+ ..|.++| +++. ..+.. + ..+..+ +|+|+.|+.++.+
T Consensus 170 ~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~-~-~~~~~~--spdg~~l~~~~~~~~~~~ 240 (347)
T 2gop_A 170 K-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFE-K-VSFYAV--DSDGERILLYGKPEKKYM 240 (347)
T ss_dssp E-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEE-E-ESEEEE--EECSSCEEEEECCSSSCC
T ss_pred C-C-CcccccCCCCeEEEEEecccccccccccccEEEeC--CCce-EEecc-C-cceeeE--CCCCCEEEEEEccccCCc
Confidence 4 3 7889999987655555443 2455555 5544 44443 3 445544 9999988876643
Q ss_pred ---CeEEEEeCCCCceeeeeecCCCceEE-EEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCc
Q 014104 297 ---GYASCWDLRTMKSLWETRISPNVVYS-LQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSG 372 (430)
Q Consensus 297 ---g~i~i~d~~~~~~~~~~~~~~~~v~~-l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~ 372 (430)
..|.+|| +++.......+...+.. +. |+ ++ ++++++.++.+++| +.+++.. .+..+
T Consensus 241 ~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~-~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~------------- 300 (347)
T 2gop_A 241 SEHNKLYIYD--GKEVMGILDEVDRGVGQAKI-KD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKG------------- 300 (347)
T ss_dssp CSSCEEEEEC--SSCEEESSTTCCSEEEEEEE-ET-TE-EEEEEEETTEEEEE-EESSSEE-EEECS-------------
T ss_pred cccceEEEEC--CCceEeccccCCcccCCccE-Ec-Cc-EEEEEecCCcEEEE-EcCCceE-EEecC-------------
Confidence 4688888 56554444556677776 76 88 88 88999999999999 8766543 22221
Q ss_pred eEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeE-EEEEec
Q 014104 373 VIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYI-RLWKFN 424 (430)
Q Consensus 373 ~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v-~vw~~~ 424 (430)
...|.++++++..+++++.++.. .+|.++
T Consensus 301 -----------------------~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 301 -----------------------RHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp -----------------------SSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred -----------------------CCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 23567777755556777777765 788775
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.8e-15 Score=134.68 Aligned_cols=214 Identities=12% Similarity=0.011 Sum_probs=147.9
Q ss_pred EEecCCCeeEEeeecCCc-eeE-----EEEecCCCEEE-EEe-CC--eEEEEEcCCCcccccCCC-CceeeeeEEEEcCC
Q 014104 136 LWSLEGYKCVEEYSLPNA-ASL-----VDFDFDESKIV-GLI-GT--RICIWRRNGLRSVFPSRE-GTFMKGLCMRYFDP 204 (430)
Q Consensus 136 iwd~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~l~-~~~-~~--~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~ 204 (430)
.+|..++..+..+..+.. ... .+|+|||+.|+ ++. ++ .|.+||+++++....... ........+++++.
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 346677777777665432 222 67999999988 554 55 488899988874332222 22222357888888
Q ss_pred ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEe--cCC-CEEEE----------------------EeCCCeEEEE
Q 014104 205 EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL--SED-QLIIS----------------------GSSLGSIAIS 259 (430)
Q Consensus 205 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~--~~~-~~l~~----------------------~~~dg~i~vw 259 (430)
.|+.++.++.|++||+.+++....+..+...+....+ +++ ..++. ...+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 8999999999999999999877777666665544443 565 55542 2245789999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEeCCCCceeeeeecCC--CceEEEEEeeCCC
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTTA------GYASCWDLRTMKSLWETRISP--NVVYSLQHLQNDT 330 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~s~~~ 330 (430)
|+.+++...... +...+..+.|+| +|+.|+....+ ..|.++|...++. ..+..+. ..+.... |+|||
T Consensus 174 d~~~g~~~~l~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~-~spdg 249 (388)
T 3pe7_A 174 DLKTGESTVILQ--ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEF-WVPDG 249 (388)
T ss_dssp ETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEE-ECTTS
T ss_pred ECCCCceEEeec--CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccce-ECCCC
Confidence 999987655444 455789999999 99988876653 3688888875543 3343343 3577777 99999
Q ss_pred CeEEEEcC-C----CeEEEEEcCCCceE
Q 014104 331 STLVVGGI-D----GVLRVLDQNTGEVL 353 (430)
Q Consensus 331 ~~l~s~~~-d----g~i~vwd~~~~~~~ 353 (430)
+.|+..+. + ..|++||+.+++..
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 250 SALVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp SCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred CEEEEEecCCCCCcceEEEEecCCCceE
Confidence 98765443 2 24999999988753
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-15 Score=148.34 Aligned_cols=194 Identities=7% Similarity=-0.053 Sum_probs=139.3
Q ss_pred eeEEEEecCCCEEEEEeCCeEEEEEcCCCcc--cccCCCCce--eee--eEEEEcCCceEEEecC---------CeEEEE
Q 014104 154 ASLVDFDFDESKIVGLIGTRICIWRRNGLRS--VFPSREGTF--MKG--LCMRYFDPEAVVGCED---------GTARVF 218 (430)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~--~~~~~~~~~--~~~--~~~~~~~~~l~~~~~d---------g~i~vw 218 (430)
...+.|++|+++++.+ ++.|.+||+.+++. ++..+.... ... ..+++++..|+.++.+ +.+.+|
T Consensus 19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~ 97 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (740)
T ss_dssp CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence 4568999999888765 99999999998874 233332211 112 5778888888888876 567799
Q ss_pred ECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCe-----------------EE
Q 014104 219 DMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGI-----------------KT 280 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v-----------------~~ 280 (430)
|+.+++.. .+..|.+.+...+|+|+ +.|+.+ .++.|++||+.+++..+.....+...+ ..
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~ 175 (740)
T 4a5s_A 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (740)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcc
Confidence 99998765 46667788999999987 677776 478999999988775543222122222 35
Q ss_pred EEEecCCCEEEEEeCCC------------------------------------eEEEEeCCC---Cc--eeeeee-----
Q 014104 281 LCYNPCSRLVFAGTTAG------------------------------------YASCWDLRT---MK--SLWETR----- 314 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~dg------------------------------------~i~i~d~~~---~~--~~~~~~----- 314 (430)
+.|||||+.|+.++.|. .|++||+.+ ++ ....+.
T Consensus 176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~ 255 (740)
T 4a5s_A 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (740)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence 89999999999774221 588899988 73 222333
Q ss_pred -cCCCceEEEEEeeCCCCeEEEEc----CCCeEEEEEcCCCc
Q 014104 315 -ISPNVVYSLQHLQNDTSTLVVGG----IDGVLRVLDQNTGE 351 (430)
Q Consensus 315 -~~~~~v~~l~~~s~~~~~l~s~~----~dg~i~vwd~~~~~ 351 (430)
+|...+..++ |+|||+.++... .+..|++||+.+++
T Consensus 256 ~~~~~~~~~~~-wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 256 LIGDHYLCDVT-WATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp HTSCEEEEEEE-EEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred CCCCeEEEEEE-EeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 3677888998 999999766553 23479999999887
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-12 Score=111.18 Aligned_cols=239 Identities=9% Similarity=-0.027 Sum_probs=157.8
Q ss_pred EEEeccccceeEEEe-cCCeEEEEe-CCCeEEEEecCCCeeEEeee---cCCceeEEEEecCCCEEEEEe-CCeEEEEEc
Q 014104 106 DQWKAHSVGVDQCRM-KRGLILTGV-GDKVMRLWSLEGYKCVEEYS---LPNAASLVDFDFDESKIVGLI-GTRICIWRR 179 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~-~~~i~vwd~ 179 (430)
..+..+...+.++++ ++|.+..+. .++.|.+||.. ++.. .+. ....+..+++++++..+++.. ++.|..||.
T Consensus 8 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 8 LNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-EYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITK 85 (299)
T ss_dssp EECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-EecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECC
Confidence 345566678999998 466444444 47899999988 5543 333 224566788999998877655 788999998
Q ss_pred CCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 180 NGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 180 ~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
+.....+... .......+++.+.+...++...++.|..||. +++.... ...+...+..+++.++ .+.++...++.|
T Consensus 86 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 86 KGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp TSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred CCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 7433222221 1222222333333333444556789999998 5554322 2234457889999876 555555667899
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee-eecCCCceEEEEEeeCCCCeEEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE-TRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
..||. +++............+..++++++|++.++...++.|.+||. +++.... ...+...+.+++ ++++|...++
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~-~~~~g~l~v~ 241 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAIT-AGAGIDLWFT 241 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-ECSTTCEEEE
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEE-ECCCCCEEEe
Confidence 99998 666544312213456889999999997777667889999999 6654321 233446788998 9999987777
Q ss_pred EcCCCeEEEEEcCCCc
Q 014104 336 GGIDGVLRVLDQNTGE 351 (430)
Q Consensus 336 ~~~dg~i~vwd~~~~~ 351 (430)
...++.|..||. +++
T Consensus 242 ~~~~~~i~~~d~-~g~ 256 (299)
T 2z2n_A 242 EWGANKIGRLTS-NNI 256 (299)
T ss_dssp ETTTTEEEEEET-TTE
T ss_pred ccCCceEEEECC-CCc
Confidence 767889999998 453
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=134.25 Aligned_cols=216 Identities=8% Similarity=-0.115 Sum_probs=144.2
Q ss_pred EEecCCCeeEEeeecCCc------eeEEEEecCCCEEE-EEeC---CeEEEEEcCCCcccccCC-CCceeeeeEEEEcCC
Q 014104 136 LWSLEGYKCVEEYSLPNA------ASLVDFDFDESKIV-GLIG---TRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDP 204 (430)
Q Consensus 136 iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (430)
..|..+++.+..+..+.. ...++|+|||+.|+ .... ..+.+||+.+++...... .........+++++.
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~ 93 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDER 93 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSS
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCC
Confidence 447778777766654322 34578999999988 4332 368889998876432222 222222356788888
Q ss_pred ceEEEecCCeEEEEECCCCeeeEEeecCCCCeEE-------------------EEecCC-CEEEEE-----eCCCeEEEE
Q 014104 205 EAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTS-------------------LSLSED-QLIISG-----SSLGSIAIS 259 (430)
Q Consensus 205 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~-------------------~~~~~~-~~l~~~-----~~dg~i~vw 259 (430)
.|+.++.++.|++||+.+++.......+...... +.++|+ +.++.+ ..+..|.+|
T Consensus 94 ~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 94 AFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE
Confidence 8999999999999999988776655544442222 234444 333332 456789999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEec-CCCEEEEEeCC------CeEEEEeCCCCceeeeeecC-CCceEEEEEeeCCCC
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNP-CSRLVFAGTTA------GYASCWDLRTMKSLWETRIS-PNVVYSLQHLQNDTS 331 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~-~~~v~~l~~~s~~~~ 331 (430)
|+.+++...... +...+..+.|+| +++.|+..+.+ ..|.+||+..++........ ...+..+. |+|+|+
T Consensus 174 d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~-~spdg~ 250 (396)
T 3c5m_A 174 DIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF-WIPDGS 250 (396)
T ss_dssp ETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE-ECTTSS
T ss_pred ECCCCcEEeecc--CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE-ECCCCC
Confidence 999887765554 456789999999 78877765543 36889998765433222211 23577787 999999
Q ss_pred eEEEEcCC-----CeEEEEEcCCCceEE
Q 014104 332 TLVVGGID-----GVLRVLDQNTGEVLS 354 (430)
Q Consensus 332 ~l~s~~~d-----g~i~vwd~~~~~~~~ 354 (430)
+|+.++.+ +.|++||+.+++...
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~ 278 (396)
T 3c5m_A 251 AMAYVSYFKGQTDRVIYKANPETLENEE 278 (396)
T ss_dssp CEEEEEEETTTCCEEEEEECTTTCCEEE
T ss_pred EEEEEecCCCCccceEEEEECCCCCeEE
Confidence 88777543 459999999887543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-13 Score=135.39 Aligned_cols=246 Identities=10% Similarity=-0.030 Sum_probs=160.3
Q ss_pred eEEEEecccccee---------EEEe---cCC-e-EEEEeC-CCeEEEEecC--C-CeeEEeeec------CCceeEEEE
Q 014104 104 DIDQWKAHSVGVD---------QCRM---KRG-L-ILTGVG-DKVMRLWSLE--G-YKCVEEYSL------PNAASLVDF 159 (430)
Q Consensus 104 ~~~~l~~h~~~v~---------~~~~---~~~-~-l~s~~~-dg~i~iwd~~--~-~~~~~~~~~------~~~~~~~~~ 159 (430)
..+.+.+|...+. ...+ ||| + |+.++. +..|.++++. + ++. ..+.. ......++|
T Consensus 59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~ 137 (662)
T 3azo_A 59 AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVL 137 (662)
T ss_dssp CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEE
T ss_pred CcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEE
Confidence 3455666765555 4433 556 6 665544 5667777766 3 443 33332 223556899
Q ss_pred ecCCCEEE-EEeC----------CeEEEEEcCC------CcccccC-CCCceeeeeEEEEcCCceEEEecC--------C
Q 014104 160 DFDESKIV-GLIG----------TRICIWRRNG------LRSVFPS-REGTFMKGLCMRYFDPEAVVGCED--------G 213 (430)
Q Consensus 160 ~~~~~~l~-~~~~----------~~i~vwd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d--------g 213 (430)
+|||+.|+ ++.+ ..|.+||+++ ++..... ..........+++++..|+.++.+ .
T Consensus 138 spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~ 217 (662)
T 3azo_A 138 LPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGT 217 (662)
T ss_dssp ETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCE
T ss_pred CCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCc
Confidence 99999998 5554 5799999988 5432222 222344556788888888877754 4
Q ss_pred eEEEEECC-CC---eeeEEeecCCCCeEEEEecCC-CEEEEEeCCC--eEEEEeCCCCceeEEEecCCCCC--------e
Q 014104 214 TARVFDMY-SR---KCSQIIRMHCAPVTSLSLSED-QLIISGSSLG--SIAISGLSSDQRVATLRSTDCTG--------I 278 (430)
Q Consensus 214 ~i~vwd~~-~~---~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~--------v 278 (430)
.|.+||+. ++ +.......|...+..+.|+|+ ++++++..++ .|.+||+.+++....... +... +
T Consensus 218 ~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~-~~~~~~p~w~~~~ 296 (662)
T 3azo_A 218 ELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRR-EEEFAGPLWTPGM 296 (662)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCC-SSBSSCCCCSTTC
T ss_pred EEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccc-cccccCccccccC
Confidence 79999998 56 444445556788999999976 6777777777 777788767765433332 2211 5
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEE--eCCCCceeeeeecCCCceEEE-EEeeCCCCeEEEEcCCC--eEEEEEcCCCceE
Q 014104 279 KTLCYNPCSRLVFAGTTAGYASCW--DLRTMKSLWETRISPNVVYSL-QHLQNDTSTLVVGGIDG--VLRVLDQNTGEVL 353 (430)
Q Consensus 279 ~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~~~~~~~~~~~~~v~~l-~~~s~~~~~l~s~~~dg--~i~vwd~~~~~~~ 353 (430)
..++|+|++++++++.. +.+++| |+.+++ +..+..|...+..+ . ++.+.-++++++.+. .|.++|+.+++..
T Consensus 297 ~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 297 RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLT-VSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEE-EETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEe-cCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 67899999999999988 988998 555554 56777777777766 4 433333344445554 4666677777654
Q ss_pred E
Q 014104 354 S 354 (430)
Q Consensus 354 ~ 354 (430)
.
T Consensus 374 ~ 374 (662)
T 3azo_A 374 T 374 (662)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-13 Score=136.72 Aligned_cols=239 Identities=10% Similarity=0.017 Sum_probs=164.5
Q ss_pred cccceeEEEe-cCC-eEEEEeCCC-----eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCe---------
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDK-----VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTR--------- 173 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~--------- 173 (430)
|...+..++| ||| +|+.++.++ .|++||+.+++.+.....+.....++|+||++.|+ ++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~ 202 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTET 202 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccc
Confidence 4445777888 566 676655433 89999999998776433322345699999999988 666554
Q ss_pred -------EEEEEcCCCcc----cccCCC-CceeeeeEEEEcCCceEEEec-----CCeEEEEECCC------Ce-eeEEe
Q 014104 174 -------ICIWRRNGLRS----VFPSRE-GTFMKGLCMRYFDPEAVVGCE-----DGTARVFDMYS------RK-CSQII 229 (430)
Q Consensus 174 -------i~vwd~~~~~~----~~~~~~-~~~~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~------~~-~~~~~ 229 (430)
|.+|++.+++. ++.... ........+++++..|+.++. +..|.+||+.+ +. ....+
T Consensus 203 ~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l 282 (710)
T 2xdw_A 203 STNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKL 282 (710)
T ss_dssp CCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEE
T ss_pred ccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEe
Confidence 99999988762 222221 222344667777777776654 56899999976 43 45666
Q ss_pred ecCCCCeEEEEecC-CCEEEEEeC----CCeEEEEeCCCCce--eEEEecCCC-CCeEEEEEecCCCEEEEEeCCCe--E
Q 014104 230 RMHCAPVTSLSLSE-DQLIISGSS----LGSIAISGLSSDQR--VATLRSTDC-TGIKTLCYNPCSRLVFAGTTAGY--A 299 (430)
Q Consensus 230 ~~~~~~i~~~~~~~-~~~l~~~~~----dg~i~vwd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~--i 299 (430)
..+...+... |++ ++.++..+. .+.|.+||+.++.. ...+..+.. ..+..+.|++++.++++...++. |
T Consensus 283 ~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l 361 (710)
T 2xdw_A 283 IDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTL 361 (710)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEE
T ss_pred eCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEE
Confidence 6666666554 554 455555443 23699999987642 344444233 26888999977788888888884 6
Q ss_pred EEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE-c---CCCeEEEEEcCCCc
Q 014104 300 SCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG-G---IDGVLRVLDQNTGE 351 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~-~---~dg~i~vwd~~~~~ 351 (430)
.+||+.+++.+..+..+.+.+..+. ++|++..++.. + ..+.|++||+.+++
T Consensus 362 ~~~~~~~g~~~~~l~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 362 QLHDLATGALLKIFPLEVGSVVGYS-GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTTCCEEEEECCCSSEEEEEE-CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCCCCEEEecCCCCceEEEEe-cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6678767887777877778888888 89998766533 2 45789999999887
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-13 Score=119.51 Aligned_cols=243 Identities=11% Similarity=-0.004 Sum_probs=167.9
Q ss_pred cccCCEeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEEEEe-CC
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIVGLI-GT 172 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~ 172 (430)
+......+..+..+.....+++| +++ +++++..++.|..||..++ ...+..+ ..+..++++++++.+++.. ++
T Consensus 13 ~~~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~ 90 (296)
T 3e5z_A 13 LFPAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLR 90 (296)
T ss_dssp GSCTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTT
T ss_pred hcCCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCC
Confidence 34445566677777788889999 444 6778888999999999887 5555544 4566799999999877554 58
Q ss_pred eEEEEEcCCCccc-cc-CCCCc---eeeeeEEEEcCCceEE----Ee-------------cCCeEEEEECCCCeeeEEee
Q 014104 173 RICIWRRNGLRSV-FP-SREGT---FMKGLCMRYFDPEAVV----GC-------------EDGTARVFDMYSRKCSQIIR 230 (430)
Q Consensus 173 ~i~vwd~~~~~~~-~~-~~~~~---~~~~~~~~~~~~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~~ 230 (430)
.|.+||..+++.. +. ..... ....+++.+.+..+++ |+ ..+.|..++.. ++ +..+.
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~ 168 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPI 168 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEE
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEee
Confidence 9999999766532 11 11111 1123445555544554 22 13467777765 44 34445
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC-CCce---eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS-SDQR---VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
.+......++|+|+ +.+++.+.++.|.+||+. +++. ...+ ......+..++++++|+++++. ++.|.+||..
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 56677899999976 666777788999999987 5554 3344 3245567889999999866665 7889999987
Q ss_pred CCceeeeeecCCCceEEEEEe-eCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 306 TMKSLWETRISPNVVYSLQHL-QNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 306 ~~~~~~~~~~~~~~v~~l~~~-s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
++.+..+..+.. +.+++ | +|+++.|++++.+ .+.-++..+.+
T Consensus 246 -g~~~~~~~~~~~-~~~~~-f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 246 -GDELGRVLTPQT-TSNLC-FGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp -SCEEEEEECSSC-CCEEE-EESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred -CCEEEEEECCCC-ceeEE-EECCCCCEEEEEcCC-eEEEEEccccc
Confidence 777778877766 88888 7 6899988888766 45555666544
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-13 Score=134.62 Aligned_cols=205 Identities=11% Similarity=0.006 Sum_probs=140.9
Q ss_pred eeEEEEecCCCEEE-EEe-CC----eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCe-------------
Q 014104 154 ASLVDFDFDESKIV-GLI-GT----RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGT------------- 214 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~-~~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------------- 214 (430)
....+|+|||+.|+ +.. +| .|++||+++++...............|++++..|+.++.++.
T Consensus 127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~ 206 (710)
T 2xdw_A 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL 206 (710)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCC
Confidence 45689999999998 443 33 899999999875432111111344778888888888887765
Q ss_pred ---EEEEECCCCee--eEEee--cCCCCeEEEEecCC-CEEEEEeC-----CCeEEEEeCCC------Cc-eeEEEecCC
Q 014104 215 ---ARVFDMYSRKC--SQIIR--MHCAPVTSLSLSED-QLIISGSS-----LGSIAISGLSS------DQ-RVATLRSTD 274 (430)
Q Consensus 215 ---i~vwd~~~~~~--~~~~~--~~~~~i~~~~~~~~-~~l~~~~~-----dg~i~vwd~~~------~~-~~~~~~~~~ 274 (430)
|++|++.+++. ...+. .|...+..+.|+|+ ++++.++. +..|.+||+.+ +. ....+.. +
T Consensus 207 ~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~ 285 (710)
T 2xdw_A 207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID-N 285 (710)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC-S
T ss_pred CCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC-C
Confidence 99999988763 22223 24556789999986 66766654 57899999986 43 3555654 4
Q ss_pred CCCeEEEEEecCCCEEEEEeCC----CeEEEEeCCCCce--eeeeecCCC--ceEEEEEeeCCCCeEEEEcCCCe--EEE
Q 014104 275 CTGIKTLCYNPCSRLVFAGTTA----GYASCWDLRTMKS--LWETRISPN--VVYSLQHLQNDTSTLVVGGIDGV--LRV 344 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~--~~~~~~~~~--~v~~l~~~s~~~~~l~s~~~dg~--i~v 344 (430)
...+.. .|+|+|+.|+..+.. +.|.+||+.+++. ...+..|.. .+..+. +++++.++++...++. |.+
T Consensus 286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~lv~~~~~~g~~~l~~ 363 (710)
T 2xdw_A 286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA-CVRSNFLVLCYLHDVKNTLQL 363 (710)
T ss_dssp SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEE-EETTTEEEEEEEETTEEEEEE
T ss_pred CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEE-EEcCCEEEEEEEECCEEEEEE
Confidence 444444 588999887766543 3699999987642 344555543 677787 7777888888888874 666
Q ss_pred EEcCCCceEEEEEeccC
Q 014104 345 LDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 345 wd~~~~~~~~~~~~~~~ 361 (430)
||+.+|+.+..+..+..
T Consensus 364 ~~~~~g~~~~~l~~~~~ 380 (710)
T 2xdw_A 364 HDLATGALLKIFPLEVG 380 (710)
T ss_dssp EETTTCCEEEEECCCSS
T ss_pred EECCCCCEEEecCCCCc
Confidence 78767887777765543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.4e-12 Score=115.13 Aligned_cols=251 Identities=5% Similarity=-0.066 Sum_probs=170.3
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEE-----------eCCeEEEEEcCCCcccccCCC--------Cce
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGL-----------IGTRICIWRRNGLRSVFPSRE--------GTF 193 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~i~vwd~~~~~~~~~~~~--------~~~ 193 (430)
+|.++|..+++.+.++...... .++++||++.++.+ .++.|.+||..+.+.+..... +..
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~ 126 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPY 126 (373)
T ss_pred EEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCC
Confidence 8899999999999888765555 89999999999843 257899999987664322111 112
Q ss_pred eeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEE-eecCCCCeEEEEecC--CCEEEEEeCCCeEEEEeCCCCceeE
Q 014104 194 MKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSE--DQLIISGSSLGSIAISGLSSDQRVA 268 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~ 268 (430)
...+.+++++..+++++. ++.|.++| .+++.+.. +.. .+. +.+.| ...+++.+.||.+.++|. +++...
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 235678888888888774 57899999 99988877 642 222 33333 256677788999999999 887764
Q ss_pred EEec----CCCCC-eEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--eeeeeecC----------CCceEEEEEeeCCCC
Q 014104 269 TLRS----TDCTG-IKTLCYNPCSRLVFAGTTAGYASCWDLRTMK--SLWETRIS----------PNVVYSLQHLQNDTS 331 (430)
Q Consensus 269 ~~~~----~~~~~-v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~----------~~~v~~l~~~s~~~~ 331 (430)
.... ....+ .....+.+++..++..+..+.+.+.|+..+. .+..+... ......+. ++|+++
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~-~s~d~~ 279 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA-YLKSSD 279 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE-ECCCCC
Confidence 3320 01112 2334566766655544577899999997542 22222211 12233466 899999
Q ss_pred eEEEEcC----------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeE
Q 014104 332 TLVVGGI----------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITC 401 (430)
Q Consensus 332 ~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~ 401 (430)
.++++.. ++.|.++|+.+++.+.++.... ...+
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-------------------------------------~p~~ 322 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-------------------------------------DVDA 322 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-------------------------------------CcCe
Confidence 8877643 3589999999999999886422 2455
Q ss_pred EEE--cCe-EEEEee-CCCeEEEEEecCCCc
Q 014104 402 LAV--GMK-KVVTTH-NSKYIRLWKFNYSDK 428 (430)
Q Consensus 402 v~~--~~~-~l~t~~-~Dg~v~vw~~~~~~~ 428 (430)
++| ||+ +++++. .++.|.|||..+++.
T Consensus 323 i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 323 ISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred EEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 555 566 566666 589999999988764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-12 Score=119.96 Aligned_cols=262 Identities=11% Similarity=0.054 Sum_probs=177.1
Q ss_pred EEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceee--
Q 014104 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMK-- 195 (430)
Q Consensus 118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~-- 195 (430)
+...++.++.++.++.|..+|..+|+.+..+.............++..++++.++.+..+|.++++..+.........
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~ 178 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL 178 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee
Confidence 344677888899999999999999999887776543322112234544558889999999999887654432221110
Q ss_pred --eeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCC----eEE---EEec---CCCEEEEEeCCCeEEEEeCCC
Q 014104 196 --GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP----VTS---LSLS---EDQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 196 --~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----i~~---~~~~---~~~~l~~~~~dg~i~vwd~~~ 263 (430)
.......+..+++++.++.+..+|..+++.+......... +.. +... .+..++.++.++.+..+|..+
T Consensus 179 ~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t 258 (376)
T 3q7m_A 179 RGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS 258 (376)
T ss_dssp CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTT
T ss_pred cCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC
Confidence 0111223556888888999999999999988776532110 000 1111 246788888899999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec-CCCceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
++.+..... .....+.. ++..++.++.++.+..+|..+++.+..... ....+.... . .+..|+.++.+|.|
T Consensus 259 G~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-~--~~~~l~v~~~~g~l 330 (376)
T 3q7m_A 259 GQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPV-L--YNGNLVVGDSEGYL 330 (376)
T ss_dssp CCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCE-E--ETTEEEEECTTSEE
T ss_pred CcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCE-E--ECCEEEEEeCCCeE
Confidence 998877653 23444444 466788888899999999999998877652 222233333 2 35678889999999
Q ss_pred EEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEE
Q 014104 343 RVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 343 ~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~ 422 (430)
+++|..+|+.+......... ........+..|+.++.||.|..|+
T Consensus 331 ~~~d~~tG~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 331 HWINVEDGRFVAQQKVDSSG-----------------------------------FQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEETTTCCEEEEEECCTTC-----------------------------------BCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred EEEECCCCcEEEEEecCCCc-----------------------------------ceeCCEEECCEEEEEeCCCEEEEEe
Confidence 99999999998877642220 1112233456678888999998886
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-13 Score=116.94 Aligned_cols=236 Identities=7% Similarity=-0.040 Sum_probs=155.5
Q ss_pred ceeEEEe-cCC-eEE-EEeCCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC-
Q 014104 114 GVDQCRM-KRG-LIL-TGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS- 188 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~- 188 (430)
...++++ +++ +++ +...++.|.+||..+........ .......++++++++.+++..++.|.+||.++.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~ 104 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 104 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeec
Confidence 5677888 556 444 43678999999977654332211 224566799999998666655889999998876533221
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV 267 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~ 267 (430)
........+++.+.+..+++...++.|.+|+..+.............+..++++++ +++++...++.|.+||.......
T Consensus 105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 184 (270)
T 1rwi_B 105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV 184 (270)
T ss_dssp CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEE
T ss_pred CCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceE
Confidence 11122233444444443555566789999986555433222223346788999865 66666666789999998876544
Q ss_pred EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 268 ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 268 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
..... ....+.+++++++|.++++...++.|.+||............+...+.+++ ++++|+++++...++.|+++++
T Consensus 185 ~~~~~-~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~-~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 185 VLPFT-DITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp ECCCS-SCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEE-ECTTCCEEEEEGGGTEEEEECC
T ss_pred eeccc-CCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEE-ECCCCCEEEEECCCCEEEEEcC
Confidence 33222 335789999999998777777788999999876543332223335688998 9999998888889999999998
Q ss_pred CCCc
Q 014104 348 NTGE 351 (430)
Q Consensus 348 ~~~~ 351 (430)
...+
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 7544
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-13 Score=119.84 Aligned_cols=238 Identities=10% Similarity=0.017 Sum_probs=153.9
Q ss_pred cceeEEEec-CC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC
Q 014104 113 VGVDQCRMK-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 113 ~~v~~~~~~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~ 188 (430)
..|.++.|+ +. .++..+.++.++.| .++....+..+ .....++|+++++.++ +..++.|.+||.++++.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~ 82 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF 82 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence 346777774 33 55666778888888 33455555443 4556788999998766 456788999999877633211
Q ss_pred -CCCceeeeeEEEEcCCceEEEecC----CeEEEEECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeC------CC
Q 014104 189 -REGTFMKGLCMRYFDPEAVVGCED----GTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSS------LG 254 (430)
Q Consensus 189 -~~~~~~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~------dg 254 (430)
........+++.+.+..+++...+ +.|.+||..+++....+. .+...+.+++++|+ .++++... .+
T Consensus 83 ~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 83 VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 122223334444444435554455 589999998776543332 23457899999976 55554433 35
Q ss_pred eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCC-Cceeee--------eecCCCceEEEE
Q 014104 255 SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRT-MKSLWE--------TRISPNVVYSLQ 324 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~-~~~~~~--------~~~~~~~v~~l~ 324 (430)
.|..+|..+++...... ....+..++|+|+|+.|+ +...++.|.+||+.+ +..+.. +.++ ..+..++
T Consensus 163 ~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 163 GVYYVSPDFRTVTPIIQ--NISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp EEEEECTTSCCEEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred eEEEEeCCCCEEEEeec--CCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 67777776555433322 233578999999998665 445678999999964 333221 1122 4677887
Q ss_pred EeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 325 HLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 325 ~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
++++|.++++...++.|.+||. +++.+..+..
T Consensus 240 -~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 240 -IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 271 (333)
T ss_dssp -EBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred -ECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence 9999998888777899999998 4777776653
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=137.52 Aligned_cols=244 Identities=8% Similarity=-0.027 Sum_probs=162.1
Q ss_pred ccccceeEEEe-cCC-eEE-----EEeCCCeEEEEecCCCeeE-EeeecCCceeEEEEecCCCEEE-EEeCCe-------
Q 014104 110 AHSVGVDQCRM-KRG-LIL-----TGVGDKVMRLWSLEGYKCV-EEYSLPNAASLVDFDFDESKIV-GLIGTR------- 173 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~-----s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~~~~------- 173 (430)
+|...+..++| ||| +|+ +|+.+.+|++||+.+++.+ ...........++|+|||+.|+ ++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~ 197 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDE 197 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCcccc
Confidence 45556888888 566 666 3444578999999998865 2211111125689999999988 666554
Q ss_pred ------EEEEEcCCCcc----cccCCCC-ceeeeeEEEEcCCceEEEecCC----eEEEEECCCCeeeEEeecCCCCeEE
Q 014104 174 ------ICIWRRNGLRS----VFPSREG-TFMKGLCMRYFDPEAVVGCEDG----TARVFDMYSRKCSQIIRMHCAPVTS 238 (430)
Q Consensus 174 ------i~vwd~~~~~~----~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~i~~ 238 (430)
|++|++.++.. ++..... .......+++++..++.++.++ .|.++|..+++. ..+..+...+..
T Consensus 198 ~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~ 276 (695)
T 2bkl_A 198 RPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYE 276 (695)
T ss_dssp GGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEE
T ss_pred CCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEE
Confidence 99999988762 2222222 2334566777787777777665 777887655543 445555566666
Q ss_pred EEecCCCEEEEEeC----CCeEEEEeCCCCce--eEEEecCC-CCCeEEEEEecCCCEEEEEeCCCeEEEEeCC-CCcee
Q 014104 239 LSLSEDQLIISGSS----LGSIAISGLSSDQR--VATLRSTD-CTGIKTLCYNPCSRLVFAGTTAGYASCWDLR-TMKSL 310 (430)
Q Consensus 239 ~~~~~~~~l~~~~~----dg~i~vwd~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~ 310 (430)
..+++++ ++..+. ++.|.+||+.++.. ...+..++ ...+..++++ ++.++++...|+..++|.+. +++..
T Consensus 277 ~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 354 (695)
T 2bkl_A 277 VHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV 354 (695)
T ss_dssp EEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred EEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee
Confidence 6666556 444443 58999999987753 23333323 4468888888 67788888899988887654 35555
Q ss_pred eeeecC-CCceEEEEEeeCCCCeEEEE----cCCCeEEEEEcCCCceEEEEEe
Q 014104 311 WETRIS-PNVVYSLQHLQNDTSTLVVG----GIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 311 ~~~~~~-~~~v~~l~~~s~~~~~l~s~----~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
..+..+ .+.+..+. ++|+++.++.. ...++|++||+.+++. ..+..
T Consensus 355 ~~l~~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~-~~l~~ 405 (695)
T 2bkl_A 355 RTVQLPGVGAASNLM-GLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS-ELWAK 405 (695)
T ss_dssp EECCCSSSSEECCCB-SCTTCSEEEEEEEETTEEEEEEEEETTTCCE-EEEEE
T ss_pred EEecCCCCeEEEEee-cCCCCCEEEEEEcCCCCCCEEEEEECCCCcE-EEEec
Confidence 566555 56777787 88999877632 2457899999998874 33443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-13 Score=116.65 Aligned_cols=236 Identities=8% Similarity=-0.047 Sum_probs=156.0
Q ss_pred ceeEEEEecCCCEEE-E-EeCCeEEEEEcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe
Q 014104 153 AASLVDFDFDESKIV-G-LIGTRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
....++++++++.++ + ..++.|.+|+..+........ .......+++...+. ++++..++.|.+||..+... ..+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~i~~~d~~~~~~-~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQ-TVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCC-EEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcCCCEEEEEeCCCceE-eee
Confidence 566788999998766 5 457889999987655322211 111223344444444 55555588999999866543 333
Q ss_pred e-cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 230 R-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM 307 (430)
Q Consensus 230 ~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 307 (430)
. .....+..++++++ .++++...++.|.+||..+......... ....+.+++++|+|+++++...++.|.+||....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 2 23357889999965 6666666788999998765544322222 2346789999999997777777889999998876
Q ss_pred ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 308 KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 308 ~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
........+...+.+++ ++++|.++++...++.|.+||........ ..
T Consensus 182 ~~~~~~~~~~~~p~~i~-~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------------------------------ 229 (270)
T 1rwi_B 182 NQVVLPFTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------------------------------ 229 (270)
T ss_dssp CEEECCCSSCCSEEEEE-ECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------------------------------
T ss_pred ceEeecccCCCCceEEE-ECCCCCEEEEECCCCcEEEEcCCCCccee-ec------------------------------
Confidence 54433333336678898 99999877777788899999986543221 11
Q ss_pred cccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 388 IDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+...+.++++ +|+.+++...++.|+++++...+.
T Consensus 230 -----~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 230 -----FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp -----CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred -----cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 011135678888 477888888999999999876653
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-12 Score=118.40 Aligned_cols=267 Identities=11% Similarity=0.112 Sum_probs=176.8
Q ss_pred EEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCC---------ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccccc
Q 014104 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN---------AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~ 187 (430)
....++.++.++.++.|..+|..+++.+..+.... .........++..++ ++.++.+..+|.++++..+.
T Consensus 49 p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~ 128 (376)
T 3q7m_A 49 PALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQ 128 (376)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred cEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEE
Confidence 34467788889999999999999999887777532 111222223444444 88899999999998886543
Q ss_pred CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe-----EEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV-----TSLSLSEDQLIISGSSLGSIAISGLS 262 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~~~~~~~~~l~~~~~dg~i~vwd~~ 262 (430)
........ ......+..+++++.++.|..+|..+|+.+.......... ...... +..++.++.++.+..+|..
T Consensus 129 ~~~~~~~~-~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~ 206 (376)
T 3q7m_A 129 TKVAGEAL-SRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLME 206 (376)
T ss_dssp EECSSCCC-SCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEEEEETT
T ss_pred EeCCCceE-cCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEEEEECC
Confidence 32221111 1112235568889999999999999999888776432211 111222 4578888889999999999
Q ss_pred CCceeEEEecCCCCC---------e-EEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe
Q 014104 263 SDQRVATLRSTDCTG---------I-KTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
+++.+.......... + ....+ .+..++.++.++.+..+|.++++.+..... .....+. . ++..
T Consensus 207 tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~-~--~~~~ 279 (376)
T 3q7m_A 207 QGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFI-V--DGNR 279 (376)
T ss_dssp TCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEE-E--ETTE
T ss_pred CCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCce-E--ECCE
Confidence 999988776321100 1 01111 346778888899999999999998876553 2344444 3 4667
Q ss_pred EEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEe
Q 014104 333 LVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTT 412 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~ 412 (430)
++.++.++.|..+|..+|+.+........ ..+......+..|+.+
T Consensus 280 l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-----------------------------------~~~~~~~~~~~~l~v~ 324 (376)
T 3q7m_A 280 IYLVDQNDRVMALTIDGGVTLWTQSDLLH-----------------------------------RLLTSPVLYNGNLVVG 324 (376)
T ss_dssp EEEEETTCCEEEEETTTCCEEEEECTTTT-----------------------------------SCCCCCEEETTEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEeecccCC-----------------------------------CcccCCEEECCEEEEE
Confidence 88888899999999999998766542111 1122233345667777
Q ss_pred eCCCeEEEEEecCCCc
Q 014104 413 HNSKYIRLWKFNYSDK 428 (430)
Q Consensus 413 ~~Dg~v~vw~~~~~~~ 428 (430)
+.+|.|.++|..+|+.
T Consensus 325 ~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 325 DSEGYLHWINVEDGRF 340 (376)
T ss_dssp CTTSEEEEEETTTCCE
T ss_pred eCCCeEEEEECCCCcE
Confidence 7788888888877753
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.2e-13 Score=131.36 Aligned_cols=214 Identities=9% Similarity=-0.077 Sum_probs=139.7
Q ss_pred eeEEEEecCCCEEE-E-EeC----CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecCCe------------
Q 014104 154 ASLVDFDFDESKIV-G-LIG----TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCEDGT------------ 214 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~-~~~----~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------------ 214 (430)
....+|+|||+.|+ + ..+ ..|++||+++++.+ ............+|++++..|+.++.|..
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~ 202 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT 202 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence 55689999999998 3 223 57999999998854 22111111145788888888888888766
Q ss_pred -EEEEECCCCe----eeEEeecCCCCeEEEEecCC-CEEEEEeCCC----eEEEEeCCCCceeEEEecCCCCCeEEEEEe
Q 014104 215 -ARVFDMYSRK----CSQIIRMHCAPVTSLSLSED-QLIISGSSLG----SIAISGLSSDQRVATLRSTDCTGIKTLCYN 284 (430)
Q Consensus 215 -i~vwd~~~~~----~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 284 (430)
|++|++.+++ .+.....+...+..+.|+|+ ++++.++.++ .|.+||..+++. ..+.. +...+....+
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~-~~~~~~~~~~- 279 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVK-GVGAKYEVHA- 279 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEE-CSSCCEEEEE-
T ss_pred EEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeec-CCCceEEEEe-
Confidence 9999998876 23333345567889999976 6676666555 778887665544 34443 3445556556
Q ss_pred cCCCEEEEEe---CCCeEEEEeCCCCce--eeeeecC--CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC-CCceEEEE
Q 014104 285 PCSRLVFAGT---TAGYASCWDLRTMKS--LWETRIS--PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN-TGEVLSRC 356 (430)
Q Consensus 285 ~~~~~l~~~~---~dg~i~i~d~~~~~~--~~~~~~~--~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~ 356 (430)
++|.+++... .++.|.+||+.+++. ...+..+ ...+..+. ++ ++.++++...|+..++|.+. +++....+
T Consensus 280 ~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~-~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 280 WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVS-IV-GGHLSLEYLKDATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEE-EE-TTEEEEEEEETTEEEEEEEETTCCEEEEC
T ss_pred cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEE-EE-CCEEEEEEEECCEEEEEEEeCCCCeeEEe
Confidence 5666444443 257899999987653 2333333 34577777 66 67788888899988888665 46656655
Q ss_pred Eec-cCcceeeeccCCc
Q 014104 357 VMD-IGSASSSSNKVSG 372 (430)
Q Consensus 357 ~~~-~~~~~~~~~s~d~ 372 (430)
..+ ...+..+++++|+
T Consensus 358 ~~~~~~~v~~~~~s~d~ 374 (695)
T 2bkl_A 358 QLPGVGAASNLMGLEDL 374 (695)
T ss_dssp CCSSSSEECCCBSCTTC
T ss_pred cCCCCeEEEEeecCCCC
Confidence 543 2333334444444
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-13 Score=118.61 Aligned_cols=148 Identities=10% Similarity=0.050 Sum_probs=121.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCC-CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEE
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHC-APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCY 283 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~ 283 (430)
+++++.++.|.+||.++|+.+..+..+. ..+.++.+.|+ ++++ +.++.|..||. +++.+..+.......+.++.+
T Consensus 8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~ 84 (276)
T 3no2_A 8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARI 84 (276)
T ss_dssp EEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEE
T ss_pred EEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEE
Confidence 8888999999999999999999998766 47888999977 6666 45788999998 899999998633457889999
Q ss_pred ecCCCEEEEEeC-CCeEEEEeCCCCceeeeeec------CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 284 NPCSRLVFAGTT-AGYASCWDLRTMKSLWETRI------SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 284 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~------~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.|+|+.+++.+. ++.|..+|. +++.+.++.. +......+. ..++|.++++...++.|..||.. |+.+.++
T Consensus 85 ~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~-~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~ 161 (276)
T 3no2_A 85 LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN-KNKKGNYLVPLFATSEVREIAPN-GQLLNSV 161 (276)
T ss_dssp CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE-ECTTSCEEEEETTTTEEEEECTT-SCEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce-ECCCCCEEEEecCCCEEEEECCC-CCEEEEE
Confidence 999999999887 778888886 6777766542 112344455 78899999999999999999998 9999988
Q ss_pred Eec
Q 014104 357 VMD 359 (430)
Q Consensus 357 ~~~ 359 (430)
...
T Consensus 162 ~~~ 164 (276)
T 3no2_A 162 KLS 164 (276)
T ss_dssp ECS
T ss_pred ECC
Confidence 753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-12 Score=128.61 Aligned_cols=271 Identities=11% Similarity=0.095 Sum_probs=182.5
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce----------eEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA----------SLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~ 188 (430)
..++.++.++.++.|..+|..+|+.+..+...... .......++..++ ++.++.+..+|.++++.++..
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 35778888888999999999999999888754221 0111112344555 788999999999999866543
Q ss_pred CCC------ceeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCCCC---------------------
Q 014104 189 REG------TFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCAP--------------------- 235 (430)
Q Consensus 189 ~~~------~~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~--------------------- 235 (430)
... ..... .....+..+++++. +|.|+.+|..+|+.+..+......
T Consensus 155 ~~~~~~~~~~~~~~-~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g 233 (677)
T 1kb0_A 155 NTFEGQKGSLTITG-APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (677)
T ss_dssp ETTTTCCSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCCcCcCcCccccc-CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccC
Confidence 322 11111 11123444666554 799999999999998877642211
Q ss_pred -----------eEEEEecCC-CEEEEEeCCC-------------------eEEEEeCCCCceeEEEecCCC--------C
Q 014104 236 -----------VTSLSLSED-QLIISGSSLG-------------------SIAISGLSSDQRVATLRSTDC--------T 276 (430)
Q Consensus 236 -----------i~~~~~~~~-~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~~~--------~ 276 (430)
...++++++ +.++.++.++ .|..+|..+|+.+..+...+. .
T Consensus 234 ~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 313 (677)
T 1kb0_A 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (677)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCC
Confidence 124667754 7777777654 599999999999988774221 1
Q ss_pred CeEEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeeeeecCC-----------Cce----------------------
Q 014104 277 GIKTLCYNPCS---RLVFAGTTAGYASCWDLRTMKSLWETRISP-----------NVV---------------------- 320 (430)
Q Consensus 277 ~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----------~~v---------------------- 320 (430)
...-+....+| ..++.++.+|.++++|.++++.+..+.... ..+
T Consensus 314 ~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~ 393 (677)
T 1kb0_A 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH 393 (677)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS
T ss_pred CcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc
Confidence 23334444577 688899999999999999999887654221 001
Q ss_pred --EEEEEeeCCCCeEEEEcCC-------------------------------------------CeEEEEEcCCCceEEE
Q 014104 321 --YSLQHLQNDTSTLVVGGID-------------------------------------------GVLRVLDQNTGEVLSR 355 (430)
Q Consensus 321 --~~l~~~s~~~~~l~s~~~d-------------------------------------------g~i~vwd~~~~~~~~~ 355 (430)
..++ ++|++.++++...+ |.|..||+.+|+.+.+
T Consensus 394 ~w~~~a-~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 394 NWHPMS-FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp CSSCCE-EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred CCCCce-EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 1355 78888888776432 6777888887877776
Q ss_pred EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCee--EEEEcCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPIT--CLAVGMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~--~v~~~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+.... ++. .+..++..++.++.||.+++||..+|+.+
T Consensus 473 ~~~~~-------------------------------------~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 473 VEHVS-------------------------------------PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEESS-------------------------------------SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCCCC-------------------------------------CCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 65321 111 23446777888899999999999998764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-12 Score=112.48 Aligned_cols=199 Identities=14% Similarity=0.085 Sum_probs=133.5
Q ss_pred CceeEEEEecCCC-EEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe
Q 014104 152 NAASLVDFDFDES-KIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 152 ~~~~~~~~~~~~~-~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
.....++|+++++ .++ ...++.|..|+.+++...+... ......+.+.+.+..+++...++.|.+||..+++.....
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~ 106 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHP-SHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIA 106 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESS-CSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECC-CCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEe
Confidence 4556799999999 344 6678999999999873233322 222333444444554555555689999999888754433
Q ss_pred ecC----CCCeEEEEecCC-CEEEE----Ee-------------CCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC
Q 014104 230 RMH----CAPVTSLSLSED-QLIIS----GS-------------SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS 287 (430)
Q Consensus 230 ~~~----~~~i~~~~~~~~-~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 287 (430)
... ...+..++++|+ +++++ |+ ..+.|..+|.. ++. ..+.. ....+..++|+|+|
T Consensus 107 ~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~-~~~~~~gi~~s~dg 183 (296)
T 3e5z_A 107 DSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR-DRVKPNGLAFLPSG 183 (296)
T ss_dssp CEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC-CCSSEEEEEECTTS
T ss_pred eccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec-CCCCCccEEECCCC
Confidence 221 234567899876 56665 33 13467777765 443 33333 45578999999999
Q ss_pred CEEEEEeCCCeEEEEeCC-CCce---eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 288 RLVFAGTTAGYASCWDLR-TMKS---LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 288 ~~l~~~~~dg~i~i~d~~-~~~~---~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+.+++.+.++.|.+||+. +++. ...+..+...+.+++ ++++|++.++. ++.|.+||.. ++.+..+..
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~-~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~ 254 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR-VDAGGLIWASA--GDGVHVLTPD-GDELGRVLT 254 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE-EBTTSCEEEEE--TTEEEEECTT-SCEEEEEEC
T ss_pred CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE-ECCCCCEEEEc--CCeEEEECCC-CCEEEEEEC
Confidence 988777788999999987 4544 223333445667787 99999866666 7899999986 777777654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-12 Score=114.53 Aligned_cols=265 Identities=13% Similarity=0.042 Sum_probs=180.0
Q ss_pred cCC-eEEEEeC-----CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------eCCeEEEEEcCCCc
Q 014104 121 KRG-LILTGVG-----DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLR 183 (430)
Q Consensus 121 ~~~-~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~~~~i~vwd~~~~~ 183 (430)
|++ .++.... ++.|.+.|..+++.+.++....... +.++||++.++ +. .++.|.+||..+.+
T Consensus 42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 555 5555544 6899999999999999998755554 99999999887 43 25789999999987
Q ss_pred ccccCC--C------CceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 184 SVFPSR--E------GTFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 184 ~~~~~~--~------~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
.+-... . +.....+.+.+++..++++.. ++.|.++|+.+++.+.++... + . ...+..+ ..+++.+.
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g-~-~~~~P~g~~~~~~~~~ 197 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-D-C-YHIFPTAPDTFFMHCR 197 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECC-S-E-EEEEEEETTEEEEEET
T ss_pred EEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECC-C-c-ceeecCCCceeEEECC
Confidence 533221 1 123345778888888887764 689999999999999888632 2 1 1223223 56778888
Q ss_pred CCeEEEEeCCC-CceeEEEecCC---CCCeE-EEEEe-cCCCEEEEEeCCCeEEEEeCCCCc--eeeeee----------
Q 014104 253 LGSIAISGLSS-DQRVATLRSTD---CTGIK-TLCYN-PCSRLVFAGTTAGYASCWDLRTMK--SLWETR---------- 314 (430)
Q Consensus 253 dg~i~vwd~~~-~~~~~~~~~~~---~~~v~-~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~---------- 314 (430)
||.+.+.++.+ ++......... ..++. ...|. ++|++++ .+.+|.|++.|+.+.. .+..+.
T Consensus 198 DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g 276 (386)
T 3sjl_D 198 DGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADG 276 (386)
T ss_dssp TSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTT
T ss_pred CCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccc
Confidence 99999999986 55533221101 11221 24564 6776555 5568999999997653 333222
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcC----------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccC
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGI----------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSA 384 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~ 384 (430)
...+....++ ++++++.++.... .+.|.+.|+.+++.++++....
T Consensus 277 ~~p~g~q~~a-~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~------------------------ 331 (386)
T 3sjl_D 277 WRPGGWQQVA-YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH------------------------ 331 (386)
T ss_dssp EEECSSSCEE-EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE------------------------
T ss_pred ccCCCcceee-ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC------------------------
Confidence 0112333465 7899998877642 2579999999999999987632
Q ss_pred CcccccCCCCCCCCeeEEEE--cCe-EEEE-eeCCCeEEEEEecCCCc
Q 014104 385 GCCIDRIPKTIRPPITCLAV--GMK-KVVT-THNSKYIRLWKFNYSDK 428 (430)
Q Consensus 385 ~~~~~~~~~~h~~~v~~v~~--~~~-~l~t-~~~Dg~v~vw~~~~~~~ 428 (430)
.+..+++ |++ +|++ ...++.|.++|..+++.
T Consensus 332 -------------~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~ 366 (386)
T 3sjl_D 332 -------------EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 366 (386)
T ss_dssp -------------EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred -------------CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence 3455666 554 4544 55689999999988764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-12 Score=127.67 Aligned_cols=273 Identities=13% Similarity=0.070 Sum_probs=177.5
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCcee----------EEEEecCCCEEE-EEeCCeEEEEEcCCCcccccC
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS----------LVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~ 188 (430)
..++.++.++.++.|..+|..+|+.+..+....... .......+..++ ++.++.+..+|.++++.++..
T Consensus 68 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 68 VVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 357788888889999999999999998887542210 011112344454 788999999999999876443
Q ss_pred CCC------ceeeeeEEEEcCCceEEEe------cCCeEEEEECCCCeeeEEeecCC-----------------------
Q 014104 189 REG------TFMKGLCMRYFDPEAVVGC------EDGTARVFDMYSRKCSQIIRMHC----------------------- 233 (430)
Q Consensus 189 ~~~------~~~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~----------------------- 233 (430)
... ......... .+..+++++ .+|.|..||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRV-VNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEE-ECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 221 011101111 234455554 37899999999999987775210
Q ss_pred --------CCeEEEEecCC-CEEEEEeCCCe-------------------EEEEeCCCCceeEEEecC-CC-------CC
Q 014104 234 --------APVTSLSLSED-QLIISGSSLGS-------------------IAISGLSSDQRVATLRST-DC-------TG 277 (430)
Q Consensus 234 --------~~i~~~~~~~~-~~l~~~~~dg~-------------------i~vwd~~~~~~~~~~~~~-~~-------~~ 277 (430)
.....+++++. +.++.++.++. |..+|..+|+.+..+... +. .+
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 01124677764 78888887764 999999999999888742 11 12
Q ss_pred eEEEEEecCCC---EEEEEeCCCeEEEEeCCCCceeeeeecCC-Cc----------------------------------
Q 014104 278 IKTLCYNPCSR---LVFAGTTAGYASCWDLRTMKSLWETRISP-NV---------------------------------- 319 (430)
Q Consensus 278 v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~---------------------------------- 319 (430)
+.......+|+ .++.++.+|.++++|.++|+.+....... ..
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 22223334665 78899999999999999999874332110 00
Q ss_pred ----eEEEEEeeCCCCeEEEEcCC---------------------------------------------CeEEEEEcCCC
Q 014104 320 ----VYSLQHLQNDTSTLVVGGID---------------------------------------------GVLRVLDQNTG 350 (430)
Q Consensus 320 ----v~~l~~~s~~~~~l~s~~~d---------------------------------------------g~i~vwd~~~~ 350 (430)
-..++ ++|+..++++...+ |.|+.||+.+|
T Consensus 387 Gg~~w~~~a-~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 387 GAHDWQPMS-YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp CSSCSSCCE-EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred cccCCCcce-ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 01245 88888878776432 55666777666
Q ss_pred ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 351 EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+.+.++..+... .--.+...+.+++.|+.||.|+.||.++|+.+
T Consensus 466 ~~~W~~~~~~~~-----------------------------------~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 466 QAAWEVPYVTIF-----------------------------------NGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEESSSC-----------------------------------CCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CeEeEccCCCCc-----------------------------------cCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 666655442210 00133446778899999999999999999865
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.8e-12 Score=111.40 Aligned_cols=194 Identities=11% Similarity=0.115 Sum_probs=133.6
Q ss_pred cccceeEEEe-c-CCeEEEEeC--CCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc
Q 014104 111 HSVGVDQCRM-K-RGLILTGVG--DKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIVGLIGTRICIWRRNGLRS 184 (430)
Q Consensus 111 h~~~v~~~~~-~-~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 184 (430)
|...+..+++ + ++.++.+.. ++.|.+|| .+++.+..+... ..+..++++++++.
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l------------------- 134 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRI------------------- 134 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCE-------------------
T ss_pred cccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCE-------------------
Confidence 4456788888 3 455544443 78999999 556766666432 23445666666553
Q ss_pred cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeC
Q 014104 185 VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGL 261 (430)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~ 261 (430)
+++...++.|.+||. .++.+..+. .+...+..++++++ +++++.+.++.|.+||.
T Consensus 135 ---------------------~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 192 (286)
T 1q7f_A 135 ---------------------IVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY 192 (286)
T ss_dssp ---------------------EEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET
T ss_pred ---------------------EEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC
Confidence 333344566677764 344444443 34456889999976 56666667899999997
Q ss_pred CCCceeEEEecC-CCCCeEEEEEecCCCEEEEEeCCC-eEEEEeCCCCceeeeeecCC--CceEEEEEeeCCCCeEEEEc
Q 014104 262 SSDQRVATLRST-DCTGIKTLCYNPCSRLVFAGTTAG-YASCWDLRTMKSLWETRISP--NVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 262 ~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~s~~~~~l~s~~ 337 (430)
+++.+..+... +...+..++++|+|+++++...++ .|.+||.. ++.+..+..+. ..+.+++ ++|+|+++++ +
T Consensus 193 -~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~-~~~~g~l~vs-~ 268 (286)
T 1q7f_A 193 -EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVA-LMDDGSVVLA-S 268 (286)
T ss_dssp -TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEE-EETTTEEEEE-E
T ss_pred -CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEE-ECCCCcEEEE-C
Confidence 46666666531 225789999999999888887775 99999954 66676666554 3467888 9999987777 5
Q ss_pred CCCeEEEEEcCCC
Q 014104 338 IDGVLRVLDQNTG 350 (430)
Q Consensus 338 ~dg~i~vwd~~~~ 350 (430)
.++.|++|++...
T Consensus 269 ~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 269 KDYRLYIYRYVQL 281 (286)
T ss_dssp TTTEEEEEECSCC
T ss_pred CCCeEEEEEcccc
Confidence 7999999998654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-11 Score=109.46 Aligned_cols=236 Identities=12% Similarity=0.087 Sum_probs=156.2
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEEEEeC-----Ce
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIG-----TR 173 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-----~~ 173 (430)
......+.++...+.+++| +++ +++++..++.|.+||..+++...... ....+..++++++++.+++... +.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG 113 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCE
T ss_pred cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCce
Confidence 3456677788888899999 556 56677888999999999887665442 3456777999999988776544 48
Q ss_pred EEEEEcCCCccc--cc-CCCCceeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC
Q 014104 174 ICIWRRNGLRSV--FP-SREGTFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED 244 (430)
Q Consensus 174 i~vwd~~~~~~~--~~-~~~~~~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~ 244 (430)
|.+||.+++... .. .........+.+.+.+..+++... .+.|..+|..+++... +..+...+..++++|+
T Consensus 114 i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~d 192 (333)
T 2dg1_A 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTD 192 (333)
T ss_dssp EEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTT
T ss_pred EEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCC
Confidence 999999887643 11 111222223344444433444332 3567777776555433 3233446789999976
Q ss_pred -CEE-EEEeCCCeEEEEeCCC-CceeEEE-----ec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q 014104 245 -QLI-ISGSSLGSIAISGLSS-DQRVATL-----RS-TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 245 -~~l-~~~~~dg~i~vwd~~~-~~~~~~~-----~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 315 (430)
+.+ ++.+.++.|.+||+.+ +..+..+ .. .....+..++++++|+++++...++.|.+||. +++.+..+..
T Consensus 193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 271 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence 544 4555678999999864 3332211 11 01136788999999998888777889999998 4666666654
Q ss_pred CCC------ceEEEEEeeCCCCeEEEEcCCC
Q 014104 316 SPN------VVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 316 ~~~------~v~~l~~~s~~~~~l~s~~~dg 340 (430)
+.. .+.+++ |+|+++.|+.++.++
T Consensus 272 ~~~~~g~~~~~~~~~-~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 272 PGRDEGHMLRSTHPQ-FIPGTNQLIICSNDI 301 (333)
T ss_dssp TTGGGTCSCBCCEEE-ECTTSCEEEEEEECG
T ss_pred CCCccccccCcceEE-ECCCCCEEEEEeCcc
Confidence 432 688888 889987776666554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.56 E-value=8.4e-12 Score=111.35 Aligned_cols=237 Identities=10% Similarity=0.050 Sum_probs=156.2
Q ss_pred EeccccceeEEEe-cCC-eEEE-------EeCCCeEEEEecCCCeeEEeee-----cCCceeEEEEecC-CCEEEEEeCC
Q 014104 108 WKAHSVGVDQCRM-KRG-LILT-------GVGDKVMRLWSLEGYKCVEEYS-----LPNAASLVDFDFD-ESKIVGLIGT 172 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s-------~~~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~l~~~~~~ 172 (430)
+.+.-....+++| +++ ++++ +..++.|.+||..+++...... ....+..++++++ ++.+++...+
T Consensus 13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~ 92 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC
Confidence 4444556678888 456 5555 4778999999988877543222 1245667888998 6666677667
Q ss_pred eEEEEEcCCCccc-c-cC-CCC---ceeeeeEEEEcCCceEEEecC---------------CeEEEEECCCCeeeEEeec
Q 014104 173 RICIWRRNGLRSV-F-PS-REG---TFMKGLCMRYFDPEAVVGCED---------------GTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 173 ~i~vwd~~~~~~~-~-~~-~~~---~~~~~~~~~~~~~~l~~~~~d---------------g~i~vwd~~~~~~~~~~~~ 231 (430)
.|.+||.+ ++.. + .. ... .....+.+.+.+...++...+ +.|..+|.. ++..... .
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~ 169 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T 169 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence 89999998 5432 2 11 111 112233333334334444443 578888875 5543332 2
Q ss_pred CCCCeEEEEec----CCC-EEE-EEeCCCeEEEEeCC-CCce-----eEEEecCCC-CCeEEEEEecCCCEEEEEeCCCe
Q 014104 232 HCAPVTSLSLS----EDQ-LII-SGSSLGSIAISGLS-SDQR-----VATLRSTDC-TGIKTLCYNPCSRLVFAGTTAGY 298 (430)
Q Consensus 232 ~~~~i~~~~~~----~~~-~l~-~~~~dg~i~vwd~~-~~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~ 298 (430)
+......++++ ++. .++ +...++.|.+||.. +++. ...+.. +. ..+..++++++|+++++...++.
T Consensus 170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~p~~i~~d~~G~l~v~~~~~~~ 248 (314)
T 1pjx_A 170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG-THEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC-CSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC-CCCCCCCceEECCCCCEEEEEcCCCE
Confidence 34456888998 873 444 44567899999986 4442 222222 22 56889999999998888778889
Q ss_pred EEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE-EEEcCCCeEEEEEcCC
Q 014104 299 ASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL-VVGGIDGVLRVLDQNT 349 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l-~s~~~dg~i~vwd~~~ 349 (430)
|.+||..+++.+..+..+...+.+++ ++|+++.| ++...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~-~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLH-FKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEE-ECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEE-ECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999987877777776667889998 89999955 5555678999999864
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=7.8e-12 Score=112.68 Aligned_cols=250 Identities=12% Similarity=0.068 Sum_probs=169.5
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecCC--------ceeEEEEecCC
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLPN--------AASLVDFDFDE 163 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~ 163 (430)
.+.++..-..+ . +++ +++ +++.++ .++.|.+||..+++.+.++..+. ....+.++|||
T Consensus 71 v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 71 VIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 34444433344 3 777 566 565554 36789999999999999887542 45569999999
Q ss_pred CEEE-EEe--CCeEEEEEcCCCcccccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCC-CeeeEEeecC----CC
Q 014104 164 SKIV-GLI--GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYS-RKCSQIIRMH----CA 234 (430)
Q Consensus 164 ~~l~-~~~--~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~----~~ 234 (430)
++++ +.. ++.|.++|+.+.+.+-....... ..+.+.+ ..+++.+.||.+.+.++.+ ++.......+ ..
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~ 225 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 225 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence 9988 443 68999999999885433322211 1222333 3477889999999999976 5543322111 12
Q ss_pred CeE-EEEec-CCCEEEEEeCCCeEEEEeCCCCc--eeEEEe---------cCCCCCeEEEEEecCCCEEEEEeC------
Q 014104 235 PVT-SLSLS-EDQLIISGSSLGSIAISGLSSDQ--RVATLR---------STDCTGIKTLCYNPCSRLVFAGTT------ 295 (430)
Q Consensus 235 ~i~-~~~~~-~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~---------~~~~~~v~~~~~~~~~~~l~~~~~------ 295 (430)
++. ...|. ++..++..+.+|.|.+.|+.++. .+..+. +-.......++++|+++.++....
T Consensus 226 ~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~ 305 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWR 305 (386)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTC
T ss_pred cccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccc
Confidence 221 23554 45545456678999999997654 333332 001224445788999998887643
Q ss_pred ----CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEE-cCCCeEEEEEcCCCceEEEEEecc
Q 014104 296 ----AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVG-GIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 296 ----dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
...|.++|+.+++.+.++... ..+.+++ +++|++ +|++. ..++.|.++|..+++.++++....
T Consensus 306 hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~la-vs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 306 HKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN-VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEE-EEECEEE-ECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred cCCCCCEEEEEECCCCeEEEEEECC-CCcceEE-ECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCC
Confidence 257999999999999888754 4678998 999997 66664 568999999999999999997643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.6e-11 Score=107.90 Aligned_cols=243 Identities=12% Similarity=0.066 Sum_probs=164.1
Q ss_pred EEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecC--------CceeEEEEecCCC
Q 014104 105 IDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP--------NAASLVDFDFDES 164 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~ 164 (430)
+.++..-..+ .+++ +++ +++.+. .++.|.+||..+.+.+.++... .....+.++|||+
T Consensus 60 ~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~ 137 (373)
T 2mad_H 60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC
Confidence 4444433333 6777 566 666664 3678999999999888887653 2344689999999
Q ss_pred EEE-EEe--CCeEEEEEcCCCccccc-CCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEee-----cCCC
Q 014104 165 KIV-GLI--GTRICIWRRNGLRSVFP-SREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIR-----MHCA 234 (430)
Q Consensus 165 ~l~-~~~--~~~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~ 234 (430)
+|+ +.. ++.|.++| ++++.+.. ...... ..+.+.++. +++.+.||.+.++|. +++.+.... ....
T Consensus 138 ~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~ 212 (373)
T 2mad_H 138 DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred EEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc
Confidence 998 443 47899999 88875433 322221 233444444 677788999999999 887663322 1112
Q ss_pred Ce-EEEEecC-CCEEEEEeCCCeEEEEeCCCCc--eeEEEecC---------CCCCeEEEEEecCCCEEEEEeC------
Q 014104 235 PV-TSLSLSE-DQLIISGSSLGSIAISGLSSDQ--RVATLRST---------DCTGIKTLCYNPCSRLVFAGTT------ 295 (430)
Q Consensus 235 ~i-~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~------ 295 (430)
++ ....+.+ +..++..+..+.+.+.|+.++. .+..+... .......+.++|+++.++++..
T Consensus 213 p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred ceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCccc
Confidence 21 2233443 2333333467899999987553 22332210 1123445789999998887653
Q ss_pred ----CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEEc-CCCeEEEEEcCCCceEEEE
Q 014104 296 ----AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVGG-IDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 296 ----dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 356 (430)
.+.|.++|+.+++.+.++... ....+++ ++|||+ .++++. .++.|.++|+.+++.+.++
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~-~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISLG-HDVDAIS-VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEECC-CCcCeEE-ECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 357999999999998888643 4578898 999999 788877 5899999999999999884
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-15 Score=137.57 Aligned_cols=255 Identities=15% Similarity=0.088 Sum_probs=142.9
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEE
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCM 199 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 199 (430)
..++.+++++.||.|..||..+|+.+..+.. ..+.... +
T Consensus 7 v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p----------------------------------------~ 45 (369)
T 2hz6_A 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVP----------------------------------------T 45 (369)
T ss_dssp -CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----------------------------------------
T ss_pred eeCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecc----------------------------------------e
Confidence 3566899999999999999999998877664 2211111 1
Q ss_pred EEcCCceEEEecCCeEEEEECCCCeeeEEeecCCC-CeE-EEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 200 RYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCA-PVT-SLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 200 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~-~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
...+..+++++.||.|+.||..+|+.+..+..+.. .+. +..+..+..+++++.++.++.||..+|+.+..+.. +.
T Consensus 46 ~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~-- 122 (369)
T 2hz6_A 46 HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF-- 122 (369)
T ss_dssp ----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC---------------
T ss_pred EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC--
Confidence 11222356667889999999888887666543311 010 01111345678888899999999999999888764 22
Q ss_pred eEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC---CeEEEEcCCCeEEEEEcCCCceEE
Q 014104 278 IKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT---STLVVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~---~~l~s~~~dg~i~vwd~~~~~~~~ 354 (430)
...++|++..+++++.|+.|+.||.++++.+..+..+. ..... +.++. ..+++++.||.|+.||..+|+.+.
T Consensus 123 --~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~~~~~-~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 123 --ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD--YAASL-PEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp ------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--ECCBC-CCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred --cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc--ccCcc-ccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 23456788899999999999999999999887765332 22232 33332 567788899999999999999988
Q ss_pred EEEeccCcceeeeccCCceEEEee-------cccc--cCCc----ccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEE
Q 014104 355 RCVMDIGSASSSSNKVSGVIERNE-------GRRL--SAGC----CIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLW 421 (430)
Q Consensus 355 ~~~~~~~~~~~~~~s~d~~v~~~~-------~~~~--~~~~----~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw 421 (430)
+.........+...+.||.+.+.. ...+ .++. .......+ ..+.+....+..|+.++.||.|...
T Consensus 198 ~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~--~~~~sp~~~~g~lyv~~~~G~l~al 275 (369)
T 2hz6_A 198 IQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFP--KETEAKSKLTPTLYVGKYSTSLYAS 275 (369)
T ss_dssp EEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCCC--CHHHHHHHSEEEECBEECSSCEECC
T ss_pred EecCCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeeccC--ccccccccccceEEEecccCCEEec
Confidence 887554444556677788654211 1111 1122 22222221 1122222246678888899999888
Q ss_pred EecC
Q 014104 422 KFNY 425 (430)
Q Consensus 422 ~~~~ 425 (430)
+...
T Consensus 276 ~~~~ 279 (369)
T 2hz6_A 276 PSMV 279 (369)
T ss_dssp EEEE
T ss_pred Cccc
Confidence 8763
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-10 Score=100.64 Aligned_cols=248 Identities=7% Similarity=-0.060 Sum_probs=158.8
Q ss_pred cccCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEEEEe-C
Q 014104 98 LEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIVGLI-G 171 (430)
Q Consensus 98 ~~~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~-~ 171 (430)
|..+......+......+.++++ +++ ..++...++.|.+||.. ++... +..+ ..+..+++++++..+++.. +
T Consensus 5 w~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 82 (300)
T 2qc5_A 5 WMNFYLEEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPTPDAKVMCLIVSSLGDIWFTENGA 82 (300)
T ss_dssp GGSEEEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred ceeeeEEEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCCCCCcceeEEECCCCCEEEEecCC
Confidence 34433333344455667889988 456 44444467999999988 55443 3222 4566688888888777554 6
Q ss_pred CeEEEEEcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEE
Q 014104 172 TRICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLII 248 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~ 248 (430)
+.|..+|.+.....+... .......+.+...+...++...++.|..+|.. ++.... +......+..+++.++ ++.+
T Consensus 83 ~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 83 NKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp TEEEEECTTSCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred CeEEEECCCCCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence 889999988332222221 12222223333333334444457899999987 654422 2323457889999875 6555
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee-eecCCCceEEEEEee
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE-TRISPNVVYSLQHLQ 327 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~v~~l~~~s 327 (430)
+...++.|..+|. +++............+..++++++|++.++....+.|.+||. +++.... +..+...+.+++ ++
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~-~d 238 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAIT-AG 238 (300)
T ss_dssp EETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEE-EC
T ss_pred EecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEE-EC
Confidence 5555789999998 565543221113457899999999987777666778999998 4443322 233446678888 99
Q ss_pred CCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 328 NDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 328 ~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
++|...++...++.|..||. +++.
T Consensus 239 ~~g~l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 239 KNSEIWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp STTCEEEEETTTTEEEEECT-TSCE
T ss_pred CCCCEEEeccCCCeEEEECC-CCcE
Confidence 99987777767789999998 4543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-11 Score=117.00 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=168.0
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecC--CCeeEEeeecCCceeEEEEe----cCCCEEE--EEeCCeEEEEEcCCCc
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLE--GYKCVEEYSLPNAASLVDFD----FDESKIV--GLIGTRICIWRRNGLR 183 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~----~~~~~l~--~~~~~~i~vwd~~~~~ 183 (430)
.+..+.+ +++ ++++++.|+.|.+||+. +++.+.++........++|+ |||++++ ...++.+.++|..+.+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~ 277 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE 277 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc
Confidence 3456777 566 88889999999999995 88888888876677789999 6999888 4457999999987765
Q ss_pred ccccCCC------------C------------c--------------------------------eeeeeEEEEcCCceE
Q 014104 184 SVFPSRE------------G------------T--------------------------------FMKGLCMRYFDPEAV 207 (430)
Q Consensus 184 ~~~~~~~------------~------------~--------------------------------~~~~~~~~~~~~~l~ 207 (430)
.+..... . . ......+.+++.+++
T Consensus 278 ~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~ 357 (567)
T 1qks_A 278 PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFI 357 (567)
T ss_dssp EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEE
T ss_pred EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEE
Confidence 3211000 0 0 000123444455554
Q ss_pred E-EecCCeEEEEECCCCeeeEEeec-----CCCCeEEEEecCC-C-EEEEEe-CCCeEEEEeCCC-------CceeEEEe
Q 014104 208 V-GCEDGTARVFDMYSRKCSQIIRM-----HCAPVTSLSLSED-Q-LIISGS-SLGSIAISGLSS-------DQRVATLR 271 (430)
Q Consensus 208 ~-~~~dg~i~vwd~~~~~~~~~~~~-----~~~~i~~~~~~~~-~-~l~~~~-~dg~i~vwd~~~-------~~~~~~~~ 271 (430)
+ ...++.|.++|+.+++.+..+.. |.+.-..+ ++|+ . ..+++. .++.|.++|..+ .+.++++.
T Consensus 358 va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~ 436 (567)
T 1qks_A 358 TAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFP 436 (567)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEE
T ss_pred EEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEe
Confidence 4 44678999999999988776653 33222222 4564 4 444443 468999999987 56788887
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeC-------CCeEEEEeCCCC-----cee-eeee--------cCCCceEEEEEeeCCC
Q 014104 272 STDCTGIKTLCYNPCSRLVFAGTT-------AGYASCWDLRTM-----KSL-WETR--------ISPNVVYSLQHLQNDT 330 (430)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~i~d~~~~-----~~~-~~~~--------~~~~~v~~l~~~s~~~ 330 (430)
. ....-..+..+|+++++.+... .++|.++|+.+. ... ..+. .....+..+. |+|+|
T Consensus 437 ~-~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G 514 (567)
T 1qks_A 437 A-LGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGE-FNKDG 514 (567)
T ss_dssp C-SCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEE-ECTTS
T ss_pred c-CCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeee-ECCCC
Confidence 5 3334455789999999998763 358999999876 211 2221 1235688888 99999
Q ss_pred CeEEEEc-----CCCeEEEEEcCCCceEEEEEe
Q 014104 331 STLVVGG-----IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 331 ~~l~s~~-----~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+++..+. .++.|.|+|..+++.+.++..
T Consensus 515 ~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 515 TEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred CEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 9887663 379999999999999888864
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.5e-12 Score=114.52 Aligned_cols=256 Identities=10% Similarity=0.013 Sum_probs=175.9
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------eCCeEEEEEcCCCcccccCCC--------Cc
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVFPSRE--------GT 192 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~~~~i~vwd~~~~~~~~~~~~--------~~ 192 (430)
+.|.+.|..+++.+.++...... .+.++||++.++ +. .++.|.++|..+.+.+-.... +.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~ 177 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGT 177 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred CeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCC
Confidence 69999999999999999876555 899999999888 43 367899999998875422211 12
Q ss_pred eeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEE-
Q 014104 193 FMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVAT- 269 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~- 269 (430)
....+.+.+++..++++.. ++.|.+.|+.+++.+..+.... ...+.-.....+++.+.||.+.+.+..+++....
T Consensus 178 ~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 178 YQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp CGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred CcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 2345778888888888764 5899999999999988886422 1111111235667778899999889866665532
Q ss_pred ---EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--eeeec----------CCCceEEEEEeeCCCCeEE
Q 014104 270 ---LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL--WETRI----------SPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 270 ---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~----------~~~~v~~l~~~s~~~~~l~ 334 (430)
+..........+.+.+++..++.....+.|.+.|....... ..+.. .......++ ++|+++.++
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va-~s~dg~rly 334 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTA-YHRQSDRIY 334 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEE-EEGGGTEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeE-EcCCCCEEE
Confidence 11101111123567899888877778899999998754321 11110 011122356 889988777
Q ss_pred EEcC----------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE
Q 014104 335 VGGI----------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV 404 (430)
Q Consensus 335 s~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 404 (430)
+... ++.|.+.|+.+.+.+.++.... ...+++|
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-------------------------------------~P~gia~ 377 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-------------------------------------EIDSINV 377 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-------------------------------------EECEEEE
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECCC-------------------------------------CcCeEEE
Confidence 6642 4589999999999999987532 2345555
Q ss_pred --cCe-EEEEee-CCCeEEEEEecCCCc
Q 014104 405 --GMK-KVVTTH-NSKYIRLWKFNYSDK 428 (430)
Q Consensus 405 --~~~-~l~t~~-~Dg~v~vw~~~~~~~ 428 (430)
|++ +++++. .++.|.|+|..+++.
T Consensus 378 spDg~~~lyv~n~~s~~VsVID~~t~kv 405 (426)
T 3c75_H 378 SQDAEPLLYALSAGTQTLHIYDAATGEE 405 (426)
T ss_dssp CCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred ccCCCEEEEEEcCCCCeEEEEECCCCCE
Confidence 566 677776 689999999988764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.8e-12 Score=114.72 Aligned_cols=217 Identities=11% Similarity=0.057 Sum_probs=144.4
Q ss_pred cceeEEEe-cCC-eEEEEeCC---C--eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC-------------
Q 014104 113 VGVDQCRM-KRG-LILTGVGD---K--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG------------- 171 (430)
Q Consensus 113 ~~v~~~~~-~~~-~l~s~~~d---g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~------------- 171 (430)
..+..+.| |+| +|+.++.+ + .|.+||+.+++.......+. +..+.|+||++.|+ ++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 45677788 566 77776653 3 47888988888776665555 77799999999988 4432
Q ss_pred --------------CeEEEEEcCCCcc-c-ccCCCCceeeeeEEEEcCCceEEEecC---------CeEEEEECCCCeee
Q 014104 172 --------------TRICIWRRNGLRS-V-FPSREGTFMKGLCMRYFDPEAVVGCED---------GTARVFDMYSRKCS 226 (430)
Q Consensus 172 --------------~~i~vwd~~~~~~-~-~~~~~~~~~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~ 226 (430)
..|.+||+.+++. . +.. . ......+++++ .++++..+ ..|.++| +++..
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~ 211 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE 211 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE
Confidence 5689999988764 2 222 2 33445667666 55556543 2455555 55543
Q ss_pred EEeecCCCCeEEEEecCC-CEEEEEeCC--------CeEEEEeCCCCceeEEEecCCCCCeEE-EEEecCCCEEEEEeCC
Q 014104 227 QIIRMHCAPVTSLSLSED-QLIISGSSL--------GSIAISGLSSDQRVATLRSTDCTGIKT-LCYNPCSRLVFAGTTA 296 (430)
Q Consensus 227 ~~~~~~~~~i~~~~~~~~-~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~d 296 (430)
.+..+ ..+..+ +|+ +.++.++.+ ..|.+|| +++.. .+...+...+.. +.|+ ++ ++++++.+
T Consensus 212 -~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 212 -KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVM-GILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp -EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEE-ESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred -EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceE-eccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 34334 555555 655 666666543 4788888 55543 343335667886 8999 88 88899999
Q ss_pred CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeE-EEEEcCCCc
Q 014104 297 GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL-RVLDQNTGE 351 (430)
Q Consensus 297 g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i-~vwd~~~~~ 351 (430)
+.+++| +.+++. ..+..+...|.++. ++| ..+++++.++.. .+|.+. ++
T Consensus 283 ~~~~l~-~~~g~~-~~~~~~~~~v~~~~-~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 283 GSVNLY-IWDGEI-KPIAKGRHWIMGFD-VDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp TEEEEE-EESSSE-EEEECSSSEEEEEE-ESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred CcEEEE-EcCCce-EEEecCCCeEEeee-eeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 999999 876654 34444577889998 888 677777766654 777766 54
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.9e-12 Score=113.26 Aligned_cols=205 Identities=16% Similarity=0.110 Sum_probs=138.4
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee-
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR- 230 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~- 230 (430)
..+..++++++|+.+++...+. .|...+........ ... ..+ ..++.|.+||..+++.+..+.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~--~~~~~~~~~~~~~~-~~~--------~~~-----~~~~~i~~~d~~~g~~~~~~~~ 87 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDH--VWDGNSFDSKFVYQ-QRG--------LGP-----IEEDTILVIDPNNAEILQSSGK 87 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTC--CCCTTSBCTTSCBS-CGG--------GCS-----CCSCCEEEECTTTCCEEEEECT
T ss_pred CCceEEEECCCCCEEEEeCCCC--eEEeeccCcceeec-ccc--------ccc-----ccCCcEEEEECCCCeEEeccCC
Confidence 4577789999988877777763 23332221110000 000 000 146789999998888876654
Q ss_pred cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc-eeEEEec--------CCCCCeEEEEEec-CCCEEEEEe-CCCe
Q 014104 231 MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ-RVATLRS--------TDCTGIKTLCYNP-CSRLVFAGT-TAGY 298 (430)
Q Consensus 231 ~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~-~~~~~~~--------~~~~~v~~~~~~~-~~~~l~~~~-~dg~ 298 (430)
++......++++++ +++++...++.|++||..... .+..+.. .+...+..++++| +++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 34457889999975 777777888999999976432 4555531 1334789999999 788888876 6899
Q ss_pred EEEEeCCCCceeeeeecC----------CCceEEEEEeeCC-CCeEEEEcCCCeEEEEEcCCCceEEEEEec--cCccee
Q 014104 299 ASCWDLRTMKSLWETRIS----------PNVVYSLQHLQND-TSTLVVGGIDGVLRVLDQNTGEVLSRCVMD--IGSASS 365 (430)
Q Consensus 299 i~i~d~~~~~~~~~~~~~----------~~~v~~l~~~s~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~ 365 (430)
|++|| .+++.+..+... .....+++ ++|+ +.++++...++.|++||..+|+.+..+... ......
T Consensus 168 I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia-~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~ 245 (329)
T 3fvz_A 168 IVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLA-LVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFA 245 (329)
T ss_dssp EEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEE-EETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEE
T ss_pred EEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEE-EECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcce
Confidence 99999 557776665422 23478898 9998 777788888999999999989998888543 223344
Q ss_pred eeccCCceEE
Q 014104 366 SSNKVSGVIE 375 (430)
Q Consensus 366 ~~~s~d~~v~ 375 (430)
+++++ +.+.
T Consensus 246 ~~~~p-g~~~ 254 (329)
T 3fvz_A 246 ISYIP-GFLF 254 (329)
T ss_dssp EEEET-TEEE
T ss_pred eeecC-CEEE
Confidence 44455 4443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=9.6e-11 Score=115.37 Aligned_cols=242 Identities=15% Similarity=0.130 Sum_probs=166.2
Q ss_pred EEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-C-----ceeEEEEecCCCEEEEEe------CCeEEEEEcCCCccc
Q 014104 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-N-----AASLVDFDFDESKIVGLI------GTRICIWRRNGLRSV 185 (430)
Q Consensus 118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~ 185 (430)
+.+.++.++.++.|+.|..+|..+|+.+..+... . .....-...++..++++. ++.|..+|.++++.+
T Consensus 124 ~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~ 203 (677)
T 1kb0_A 124 VALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERK 203 (677)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEE
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEE
Confidence 3445678999999999999999999999888764 2 111111112444444443 689999999998865
Q ss_pred ccCCCCce---------------------------------eeeeEEEEcCCceEEEecCC-------------------
Q 014104 186 FPSREGTF---------------------------------MKGLCMRYFDPEAVVGCEDG------------------- 213 (430)
Q Consensus 186 ~~~~~~~~---------------------------------~~~~~~~~~~~~l~~~~~dg------------------- 213 (430)
+....... .....+.+....++.++.++
T Consensus 204 W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~ 283 (677)
T 1kb0_A 204 WRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLA 283 (677)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred EEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeE
Confidence 43221100 01223344455577776654
Q ss_pred eEEEEECCCCeeeEEeec--CC-------CCeEEEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC----
Q 014104 214 TARVFDMYSRKCSQIIRM--HC-------APVTSLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCT---- 276 (430)
Q Consensus 214 ~i~vwd~~~~~~~~~~~~--~~-------~~i~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---- 276 (430)
.|..+|..+|+.+..++. |. .....+... .+ ..++.++.+|.+.++|..+|+.+..+......
T Consensus 284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence 599999999999887763 21 111222222 33 57889999999999999999998777531110
Q ss_pred ------Ce------------------------EEEEEecCCCEEEEEeC-------------------------------
Q 014104 277 ------GI------------------------KTLCYNPCSRLVFAGTT------------------------------- 295 (430)
Q Consensus 277 ------~v------------------------~~~~~~~~~~~l~~~~~------------------------------- 295 (430)
++ ..++|+|++.++++...
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g 443 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA 443 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence 01 15688999888887543
Q ss_pred ------------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 296 ------------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 296 ------------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.|.|..||+.+++.+.++... ..+.+.. +...+..++.++.||.+++||..+|+.+.++.....
T Consensus 444 ~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~-~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~ 519 (677)
T 1kb0_A 444 KFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGT-LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (677)
T ss_dssp EEECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccccccCCCCCccEEEEEeCCCCcEEeecCCC-CCCcCcc-eEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence 278999999999999887643 3344444 556788889999999999999999999999986543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-10 Score=107.43 Aligned_cols=241 Identities=7% Similarity=-0.022 Sum_probs=160.7
Q ss_pred CEeEEEEecc---------------ccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCC
Q 014104 102 RIDIDQWKAH---------------SVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDES 164 (430)
Q Consensus 102 ~~~~~~l~~h---------------~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (430)
...+.++.|+ -.....+++ +++ ++++...++.|++||..+++............ ++++++++
T Consensus 105 ~~~v~tv~G~~~~~~~~dG~~~~a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~ 183 (409)
T 3hrp_A 105 AQNVSTISGSASKDGNDDGDLASAKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQ 183 (409)
T ss_dssp CEEEEEEEECTTCCSCCCBSTTTCCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSS
T ss_pred ccEEEEeecccCCCccCCCcHHHcccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCC
Confidence 3456777776 234667788 456 55555567899999999887766555544444 99999999
Q ss_pred EEE-EEeCC--eEEEEEcCCCcc--cc---cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE----eecC
Q 014104 165 KIV-GLIGT--RICIWRRNGLRS--VF---PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI----IRMH 232 (430)
Q Consensus 165 ~l~-~~~~~--~i~vwd~~~~~~--~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~ 232 (430)
.|+ +..++ .|.+++..++.. .. ..........+++.+.+..|+++..++.|+.||..++..... ..++
T Consensus 184 ~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 184 RVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred cEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCC
Confidence 887 44444 788888876543 11 011222233455555455577777789999999987753322 2222
Q ss_pred CCCe--EEEEecC-CC-EEEEEeCCCeEEEEeCCCCceeEEEecCC--------------CCCeEEEEEecCCCEEEEEe
Q 014104 233 CAPV--TSLSLSE-DQ-LIISGSSLGSIAISGLSSDQRVATLRSTD--------------CTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 233 ~~~i--~~~~~~~-~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~ 294 (430)
...- ..++++| +. ++++-..++.|+.||.... +..+.+.. -.....++++|+|+++++-.
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~ 341 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG 341 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC
Confidence 2222 3899998 44 5555567889999997643 33333311 13588999999999777777
Q ss_pred -CCCeEEEEeCCCCceeeeeecC---------------CCceEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 295 -TAGYASCWDLRTMKSLWETRIS---------------PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 295 -~dg~i~i~d~~~~~~~~~~~~~---------------~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
.++.|+.||+.+++. ..+.++ -.....++ ++++|.++++-..++.|+.+++
T Consensus 342 ~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~gia-vd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDIC-YDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEE-ECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEE-EcCCCCEEEEECCCCeEEEEEe
Confidence 789999999877754 334333 24577888 9999888888888888888765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-11 Score=124.27 Aligned_cols=238 Identities=13% Similarity=0.054 Sum_probs=153.5
Q ss_pred cccceeEEEe-cCC-eEEEEeCC-----CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCC----------
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGD-----KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT---------- 172 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~---------- 172 (430)
|...+..+.| ||| +|+.++.+ .+|++||+.+++.+...........++|+|| +.|+ ++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~ 239 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQAL 239 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------C
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccC
Confidence 3345677788 566 66665543 3699999999987654221111246889999 8888 55544
Q ss_pred ----eEEEEEcCCCcc----cccCCCC-ceeeeeEEEEcCCceEEEecC-----CeEEEEECCCC--eeeEEeecCCCCe
Q 014104 173 ----RICIWRRNGLRS----VFPSREG-TFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSR--KCSQIIRMHCAPV 236 (430)
Q Consensus 173 ----~i~vwd~~~~~~----~~~~~~~-~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~--~~~~~~~~~~~~i 236 (430)
.|.+|++.++.. ++..... .......+++++..|+..+.+ ..|.+||+.++ ++...+..+...+
T Consensus 240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 388999987652 2222221 123455667777777766654 38999999877 3145555555555
Q ss_pred EEEEecCCCEEEEEeC----CCeEEEEeCCCC-ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC-CCcee
Q 014104 237 TSLSLSEDQLIISGSS----LGSIAISGLSSD-QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR-TMKSL 310 (430)
Q Consensus 237 ~~~~~~~~~~l~~~~~----dg~i~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~ 310 (430)
....+..++.|+..+. ++.|.+||+.++ .....+..++...+..+.++ ++.++++...|+..++|.+. +++..
T Consensus 320 ~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 320 WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 5554434566666654 346999999875 23334433344556677887 56677888889887777554 35555
Q ss_pred eeeecC-CCceEEEEEeeCCCCeEEEE----cCCCeEEEEEcCCCc
Q 014104 311 WETRIS-PNVVYSLQHLQNDTSTLVVG----GIDGVLRVLDQNTGE 351 (430)
Q Consensus 311 ~~~~~~-~~~v~~l~~~s~~~~~l~s~----~~dg~i~vwd~~~~~ 351 (430)
..+..+ .+.+..+. ++|+++.|+.. ...++|++||+.+++
T Consensus 399 ~~l~~~~~~~v~~~~-~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 399 GAVSLPGIGSASGLS-GRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EECBCSSSCEEEEEE-CCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eeccCCCCeEEEEee-cCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 566543 56788887 88998866522 245889999998876
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-12 Score=125.14 Aligned_cols=201 Identities=10% Similarity=0.001 Sum_probs=129.2
Q ss_pred ceeEEEEecCCCEEE-EEe-C----CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCe------------
Q 014104 153 AASLVDFDFDESKIV-GLI-G----TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGT------------ 214 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~-~----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~------------ 214 (430)
.....+|+|||+.|+ +.. + ..|++||+++++.+............+|+++ ..|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCC
Confidence 345689999999998 433 2 3599999999875432111111134667777 67777776543
Q ss_pred --EEEEECCCCee--eEEee--cCCCCeEEEEecCC-CEEEEEeCC-----CeEEEEeCCCC--ceeEEEecCCCCCeEE
Q 014104 215 --ARVFDMYSRKC--SQIIR--MHCAPVTSLSLSED-QLIISGSSL-----GSIAISGLSSD--QRVATLRSTDCTGIKT 280 (430)
Q Consensus 215 --i~vwd~~~~~~--~~~~~--~~~~~i~~~~~~~~-~~l~~~~~d-----g~i~vwd~~~~--~~~~~~~~~~~~~v~~ 280 (430)
|++|++.+++. ...+. .+...+..+.|+|+ ++++..+.+ ..|.+||+.++ +....+.. +...+..
T Consensus 243 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~~ 321 (741)
T 1yr2_A 243 QTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-DLKAQWD 321 (741)
T ss_dssp CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-SSSSCEE
T ss_pred CEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-CCCceEE
Confidence 89999987752 22333 23335889999986 667766644 38999999877 31455554 3334444
Q ss_pred EEEecCCCEEEEEeC----CCeEEEEeCCCC--ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC-CCceE
Q 014104 281 LCYNPCSRLVFAGTT----AGYASCWDLRTM--KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN-TGEVL 353 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~----dg~i~i~d~~~~--~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~-~~~~~ 353 (430)
. ++|+|+.|+..+. ++.|.+||+.++ +....+..+...+..+. ++ ++.++++...|+..+||.+. ++...
T Consensus 322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~-~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVG-IA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp E-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEE-EE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred E-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEE-EE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 4 3588998887765 345999999874 23333344445566666 55 56778888889887777554 45555
Q ss_pred EEEEe
Q 014104 354 SRCVM 358 (430)
Q Consensus 354 ~~~~~ 358 (430)
+.+..
T Consensus 399 ~~l~~ 403 (741)
T 1yr2_A 399 GAVSL 403 (741)
T ss_dssp EECBC
T ss_pred eeccC
Confidence 55543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.48 E-value=5.8e-11 Score=105.87 Aligned_cols=233 Identities=12% Similarity=0.011 Sum_probs=153.2
Q ss_pred CceeEEEEecCCCEEEE--------EeCCeEEEEEcCCCcccccCC---CCceeeeeEEEEcC--CceEEEecCCeEEEE
Q 014104 152 NAASLVDFDFDESKIVG--------LIGTRICIWRRNGLRSVFPSR---EGTFMKGLCMRYFD--PEAVVGCEDGTARVF 218 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~--------~~~~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~--~~l~~~~~dg~i~vw 218 (430)
.....++|++++..+++ ..++.|.+||..+++...... .+.......+.... ..+++++..+.|.+|
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 44567888888887777 678899999987766322111 01112234444443 346666666689999
Q ss_pred ECCCCeeeEE-eec----CCCCeEEEEecCC-CEEEEEeCC---------------CeEEEEeCCCCceeEEEecCCCCC
Q 014104 219 DMYSRKCSQI-IRM----HCAPVTSLSLSED-QLIISGSSL---------------GSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 219 d~~~~~~~~~-~~~----~~~~i~~~~~~~~-~~l~~~~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
|.. ++.... ... ....+.+++++++ .+.++...+ +.|..+|.. ++...... ....
T Consensus 98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~ 173 (314)
T 1pjx_A 98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQF 173 (314)
T ss_dssp ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESS
T ss_pred eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCC
Confidence 987 665433 221 1235789999876 555555444 578888876 55443333 2335
Q ss_pred eEEEEEe----cCCCEEEEE-eCCCeEEEEeCC-CCc-----eeeeeecCC-CceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 278 IKTLCYN----PCSRLVFAG-TTAGYASCWDLR-TMK-----SLWETRISP-NVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 278 v~~~~~~----~~~~~l~~~-~~dg~i~i~d~~-~~~-----~~~~~~~~~-~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
...++++ |+++.++.+ ..++.|.+||.. +++ ....+..+. ..+..++ ++++|.++++...++.|.+|
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~-~d~~G~l~v~~~~~~~i~~~ 252 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD-FDEDNNLLVANWGSSHIEVF 252 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE-EBTTCCEEEEEETTTEEEEE
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceE-ECCCCCEEEEEcCCCEEEEE
Confidence 7889999 999766554 567899999986 343 223333343 5677888 99999988887788999999
Q ss_pred EcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe-EEEEeeCCCeEEEEE
Q 014104 346 DQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK-KVVTTHNSKYIRLWK 422 (430)
Q Consensus 346 d~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~-~l~t~~~Dg~v~vw~ 422 (430)
|..+++.+..+..+. ..+.++++ +++ .+++...++.|..|+
T Consensus 253 d~~~g~~~~~~~~~~------------------------------------~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 253 GPDGGQPKMRIRCPF------------------------------------EKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp CTTCBSCSEEEECSS------------------------------------SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCCcEeEEEeCCC------------------------------------CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 998777766654322 35777777 466 455666678999998
Q ss_pred ecC
Q 014104 423 FNY 425 (430)
Q Consensus 423 ~~~ 425 (430)
+..
T Consensus 297 ~~~ 299 (314)
T 1pjx_A 297 WQR 299 (314)
T ss_dssp CSS
T ss_pred CCC
Confidence 864
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-11 Score=118.46 Aligned_cols=255 Identities=12% Similarity=0.123 Sum_probs=169.9
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-C-----ceeEEEEecCCCEEEEE------eCCeEEEEEcCCCcccc
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-N-----AASLVDFDFDESKIVGL------IGTRICIWRRNGLRSVF 186 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~l~~~------~~~~i~vwd~~~~~~~~ 186 (430)
.+.++.++.++.|+.|..+|..+|+.+..+... + .....-.-.++..+++. .++.|..||.++++.++
T Consensus 118 ~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 197 (689)
T 1yiq_A 118 AVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW 197 (689)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred EEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEE
Confidence 445678999999999999999999999877653 1 11111111255555543 26899999999988654
Q ss_pred cCCCC----c----------------------------eeeeeEEEEcCCceEEEecCCe-------------------E
Q 014104 187 PSREG----T----------------------------FMKGLCMRYFDPEAVVGCEDGT-------------------A 215 (430)
Q Consensus 187 ~~~~~----~----------------------------~~~~~~~~~~~~~l~~~~~dg~-------------------i 215 (430)
..... . .-...++.+....++.++.++. |
T Consensus 198 ~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v 277 (689)
T 1yiq_A 198 RFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSI 277 (689)
T ss_dssp EEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEE
T ss_pred EecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeE
Confidence 32210 0 0012233334455788877764 9
Q ss_pred EEEECCCCeeeEEeec--CC-------CCeEEEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC------
Q 014104 216 RVFDMYSRKCSQIIRM--HC-------APVTSLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCT------ 276 (430)
Q Consensus 216 ~vwd~~~~~~~~~~~~--~~-------~~i~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~------ 276 (430)
..+|..+|+.+..++. |. .++...... .+ ..++.++.+|.++++|.++|+.+...+.....
T Consensus 278 ~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~ 357 (689)
T 1yiq_A 278 VAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMD 357 (689)
T ss_dssp EEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEE
T ss_pred EEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccC
Confidence 9999999999988764 21 122222221 23 37888999999999999999988554321100
Q ss_pred --------------------------------CeEEEEEecCCCEEEEEeC-----------------------------
Q 014104 277 --------------------------------GIKTLCYNPCSRLVFAGTT----------------------------- 295 (430)
Q Consensus 277 --------------------------------~v~~~~~~~~~~~l~~~~~----------------------------- 295 (430)
.-..++|+|+..++++...
T Consensus 358 ~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 358 MKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp TTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred ccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Confidence 0112688998888876532
Q ss_pred ----------------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 296 ----------------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 296 ----------------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
+|.|+.||+.+++.+.++..+.. +..-. +...+.+++.++.||.|+.||.++|+.+.++...
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~-~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~ 515 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGT-LSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAA 515 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCcc-ceECCCEEEEECCCCcEEEEECCCCccceeeeCC
Confidence 37899999999999988876643 23323 5567889999999999999999999999999875
Q ss_pred cCcc-eeeeccCCceEE
Q 014104 360 IGSA-SSSSNKVSGVIE 375 (430)
Q Consensus 360 ~~~~-~~~~~s~d~~v~ 375 (430)
.... .-++++.||..+
T Consensus 516 ~~~~~~p~ty~~~G~qy 532 (689)
T 1yiq_A 516 SGVMAAPVTYSVDGEQY 532 (689)
T ss_dssp SCCCSCCEEEEETTEEE
T ss_pred CCcccCceEEEECCEEE
Confidence 4432 233444555543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.4e-12 Score=112.57 Aligned_cols=294 Identities=12% Similarity=0.004 Sum_probs=182.7
Q ss_pred eEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCC-Cc
Q 014104 116 DQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSRE-GT 192 (430)
Q Consensus 116 ~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~-~~ 192 (430)
.+... .++.+..++.++.|..|| .+++....+..+... ..+....++..++++.+ +..+|. +++....... ..
T Consensus 23 ~~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~ 98 (330)
T 3hxj_A 23 SSPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKA 98 (330)
T ss_dssp CCCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC---
T ss_pred cCceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCC
Confidence 34455 466888888899999999 888877665543322 33445555554444444 888886 4443332221 11
Q ss_pred eeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEec
Q 014104 193 FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 272 (430)
......+ .+..+.+++.++.+..+|.. ++.......+...+.++...++..++.++.++.+..+|.. ++....+..
T Consensus 99 ~~~~~~~--~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~ 174 (330)
T 3hxj_A 99 IVSDFTI--FEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKT 174 (330)
T ss_dssp --CCEEE--ETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEEC
T ss_pred cccCceE--ECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEec
Confidence 1112222 26668889999999999988 8777766655555666666656667788888999999998 887777764
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
....+.++.+.+++... .++ +.|..+| .+++.+.........+.++. ..++|. |..++.++.|..+|. +++.
T Consensus 175 -~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~-~~~~g~-l~v~t~~~gl~~~~~-~g~~ 246 (330)
T 3hxj_A 175 -NDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPA-ISEDGT-IYVTSLDGHLYAINP-DGTE 246 (330)
T ss_dssp -SSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCCCSCCE-ECTTSC-EEEEETTTEEEEECT-TSCE
T ss_pred -CCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcceeceE-ECCCCe-EEEEcCCCeEEEECC-CCCE
Confidence 34467777787787754 444 6799999 77877777666556677777 777765 555667788888884 5777
Q ss_pred EEEEEeccCcceeeeccCCceEEEeecc----ccc-CCcccccCCCCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecCC
Q 014104 353 LSRCVMDIGSASSSSNKVSGVIERNEGR----RLS-AGCCIDRIPKTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 353 ~~~~~~~~~~~~~~~~s~d~~v~~~~~~----~~~-~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+..+..............++.+.+.+.. .+. .+....... .....+.++.. .+..|..|+.+|.+.+...+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~~g~~~~~~~-~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 247 KWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINPDGTEKWNFE-TGSWIIATPVIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECTTSCEEEEEE-CSSCCCSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred eEEeeCCCCccccceEcCCCeEEEecCCCCEEEECCCCcEEEEEE-cCCccccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence 7666644332222222334444322111 111 111121111 12345666667 3556777899999998876543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-11 Score=112.17 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=128.9
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc------------cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEEC
Q 014104 153 AASLVDFDFDESKIVGLIGTRICIWRRNGLRS------------VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDM 220 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 220 (430)
.+..+++++....++++....+.+|+++..+. ....... ...+++ ++..|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 46779999999999977767888899764331 1111222 333444 66667777 8899999999
Q ss_pred CCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 221 YSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
.+.........|..++.++.+.+.+ +++++.||.+.+||+.+++... + ...|++++|+|+| ++.|..||+++
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~~~-~----~~~Vs~v~WSpkG--~~vg~~dg~i~ 185 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQ-L----AQNVTSFDVTNSQ--LAVLLKDRSFQ 185 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEE-E----EESEEEEEECSSE--EEEEETTSCEE
T ss_pred hhhhccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcccc-c----cCCceEEEEcCCc--eEEEEcCCcEE
Confidence 8776666677788889888887544 8888999999999999887653 2 2379999999999 67899999999
Q ss_pred EEeCCCCce--eeee------e---cCCCceEEEEEeeCCCCeEEEEc
Q 014104 301 CWDLRTMKS--LWET------R---ISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 301 i~d~~~~~~--~~~~------~---~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+|+...++. ..++ . +|...|.++. |.+++.++++-+
T Consensus 186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~-wl~~~~flv~y~ 232 (388)
T 1xip_A 186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT-ILSPQDFLAVFG 232 (388)
T ss_dssp EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE-ESSSSEEEEEEE
T ss_pred EEcCCCccccccceecCCcccccccCCCeeEEEEE-EecCCeEEEEEc
Confidence 999887664 4444 2 3678899999 888888887643
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-09 Score=96.55 Aligned_cols=233 Identities=11% Similarity=-0.010 Sum_probs=147.6
Q ss_pred ccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeec---CCceeEEEEecCCCEEEEE-eCCeEEEEEcCCCc
Q 014104 110 AHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL---PNAASLVDFDFDESKIVGL-IGTRICIWRRNGLR 183 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~ 183 (430)
.+...+.++++ +++ .+++...++.|..||.. ++. ..+.. ...+..+++++++..+++. .++.|.+||.....
T Consensus 54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~ 131 (299)
T 2z2n_A 54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKI 131 (299)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE
T ss_pred cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCE
Confidence 34567888888 566 45554557899999976 332 33332 2356668888988877754 47889999984332
Q ss_pred ccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEE-eecCCCCeEEEEecCC-CEEEEEeCCCeEEEEe
Q 014104 184 SVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQI-IRMHCAPVTSLSLSED-QLIISGSSLGSIAISG 260 (430)
Q Consensus 184 ~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd 260 (430)
..+... .......+++...+...++...++.|..||. +++.... +......+..++++++ .+.++...++.|.+||
T Consensus 132 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 210 (299)
T 2z2n_A 132 REYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRIT 210 (299)
T ss_dssp EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEEC
Confidence 222211 1222223333333333444455789999998 6665432 2334456889999875 5555555678999999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee--ecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET--RISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
. +++............+.+++++++|+++++...++.|..||.. ++. ..+ ..+...+.+++ + +++.+.++.+
T Consensus 211 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~~~~~~~~~~~i~-~-~~g~l~v~~~- 284 (299)
T 2z2n_A 211 T-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NII-EEYPIQIKSAEPHGIC-F-DGETIWFAME- 284 (299)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEE-EEEECSSSSCCEEEEE-E-CSSCEEEEET-
T ss_pred C-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cce-EEEeCCCCCCccceEE-e-cCCCEEEEec-
Confidence 8 6664432121134578999999999977666577889999984 442 233 33446788998 7 8888766655
Q ss_pred CCeEEEEEcCCCc
Q 014104 339 DGVLRVLDQNTGE 351 (430)
Q Consensus 339 dg~i~vwd~~~~~ 351 (430)
.+.+..+|..+++
T Consensus 285 ~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 285 CDKIGKLTLIKDN 297 (299)
T ss_dssp TTEEEEEEEC---
T ss_pred CCcEEEEEcCccc
Confidence 5678778876543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-10 Score=106.68 Aligned_cols=235 Identities=11% Similarity=0.123 Sum_probs=161.3
Q ss_pred EEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecC--------CceeEEEEecCCCEEE-EEe--CCe
Q 014104 117 QCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP--------NAASLVDFDFDESKIV-GLI--GTR 173 (430)
Q Consensus 117 ~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~-~~~--~~~ 173 (430)
.+.+ +++ +++.+. .++.|.++|..+++.+.++..+ .....+.++||+++++ +.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 5677 566 565554 4679999999999999888753 2345689999999998 443 578
Q ss_pred EEEEEcCCCcccccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEE----eecCCCCe-EEEEecCC-CE
Q 014104 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQI----IRMHCAPV-TSLSLSED-QL 246 (430)
Q Consensus 174 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~i-~~~~~~~~-~~ 246 (430)
|.++|+.+.+.+.....+.. ..+.+.+ ..+++.+.||.+.+.+..+++.... +.....++ ..+.+.++ ..
T Consensus 202 VsVID~~t~kvv~~I~v~g~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred EEEEECCCCeEEEEEEcCCc---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence 99999999875433222221 2233333 3367788899999999866665432 11111221 12345654 55
Q ss_pred EEEEeCCCeEEEEeCCCCcee--EEEecC---------CCCCeEEEEEecCCCEEEEEeC----------CCeEEEEeCC
Q 014104 247 IISGSSLGSIAISGLSSDQRV--ATLRST---------DCTGIKTLCYNPCSRLVFAGTT----------AGYASCWDLR 305 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~i~d~~ 305 (430)
++..+..+.|.+.|...+... ..+... .......++++|+++.+++... ++.|.++|+.
T Consensus 279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 555567889999998754421 111100 0112234789999988777642 3579999999
Q ss_pred CCceeeeeecCCCceEEEEEeeCCCC-eEEEEc-CCCeEEEEEcCCCceEEEE
Q 014104 306 TMKSLWETRISPNVVYSLQHLQNDTS-TLVVGG-IDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 306 ~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 356 (430)
+.+.+.++... ....++. ++|||+ ++++.. .++.|.++|+.+++.++++
T Consensus 359 T~kvv~~I~vg-~~P~gia-~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 359 TGERINKIELG-HEIDSIN-VSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TCCEEEEEEEE-EEECEEE-ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred CCeEEEEEECC-CCcCeEE-EccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 99999988754 3578888 999999 888887 5899999999999999987
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-10 Score=114.99 Aligned_cols=192 Identities=15% Similarity=0.147 Sum_probs=128.6
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce------------eEEEEecCCCEEEEEeCCeEEEEEcCCCccccc
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA------------SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
..++.++.++.++.|..+|..+|+.+..+...... ...++ .++..++++.++.+..+|.++++.++.
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE-ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 35778888888999999999999999888653221 11222 233344477899999999999986654
Q ss_pred CCCCc-----eeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCCC----------------------
Q 014104 188 SREGT-----FMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCA---------------------- 234 (430)
Q Consensus 188 ~~~~~-----~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~---------------------- 234 (430)
..... .... .....+..++++.. +|.|..+|..+|+.+..+.....
T Consensus 143 ~~~~~~~~~~~~~~-~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 143 QQTTDPAKPYSITG-APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp EECSCTTSSCBCCS-CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred eccCCCCCcceecC-CCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 32210 0000 01112444565543 58999999999999887753110
Q ss_pred ---------CeEEEEecCC-CEEEEEeCCC-------------------eEEEEeCCCCceeEEEecC-CC-------CC
Q 014104 235 ---------PVTSLSLSED-QLIISGSSLG-------------------SIAISGLSSDQRVATLRST-DC-------TG 277 (430)
Q Consensus 235 ---------~i~~~~~~~~-~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~-~~-------~~ 277 (430)
....+++++. +.++.++.++ .|..+|..+|+.+..+... |. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 1123567654 7788887766 4999999999999888752 21 23
Q ss_pred eEEEEEecCCC---EEEEEeCCCeEEEEeCCCCceeeee
Q 014104 278 IKTLCYNPCSR---LVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 278 v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
+....+..+|+ .++.++.+|.++++|..+|+.+...
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 33333444675 6889999999999999999988543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-10 Score=105.92 Aligned_cols=245 Identities=11% Similarity=-0.028 Sum_probs=158.9
Q ss_pred ceeEEEEecCCCEEEEE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC--eEEEEECCCCeeeEEe
Q 014104 153 AASLVDFDFDESKIVGL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG--TARVFDMYSRKCSQII 229 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~ 229 (430)
....++++++++.+++. .++.|++||.+++............. +++.+.+..++++..++ .|.+++..++.....+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~ 210 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI 210 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence 34568899998866644 45899999999876432222222223 66666677788887765 8999998765543333
Q ss_pred ----ecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEE----EecCCCCC-eE-EEEEecC-CCEEEEEeCCC
Q 014104 230 ----RMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVAT----LRSTDCTG-IK-TLCYNPC-SRLVFAGTTAG 297 (430)
Q Consensus 230 ----~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~-v~-~~~~~~~-~~~l~~~~~dg 297 (430)
......+.+++++| +..|+.+..++.|..||..++..... ..+ .... .. .++|+|+ +.++++-..++
T Consensus 211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g-~~~~~P~~~ia~~p~~g~lyv~d~~~~ 289 (409)
T 3hrp_A 211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG-SLGTNPGPYLIYYFVDSNFYMSDQNLS 289 (409)
T ss_dssp EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS-CCCCSSCCEEEEETTTTEEEEEETTTT
T ss_pred eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC-CCCCCccccEEEeCCCCEEEEEeCCCC
Confidence 21445678899998 56677777789999999987764322 111 1111 23 9999995 55566666788
Q ss_pred eEEEEeCCCCceeeeeecCC---------------CceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCCceEEEEEeccC
Q 014104 298 YASCWDLRTMKSLWETRISP---------------NVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 298 ~i~i~d~~~~~~~~~~~~~~---------------~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.|+.|+.... +..+.++. .....++ ++|+|.++++-. .++.|+.||+.+++ +.++.++..
T Consensus 290 ~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia-~d~dG~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~ 365 (409)
T 3hrp_A 290 SVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMT-VDEDGNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVD 365 (409)
T ss_dssp EEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEE-ECTTCCEEEEETTTTCEEEEEETTTTE-EEEEEECTT
T ss_pred EEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEE-EeCCCCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCC
Confidence 9999997643 22332221 3477888 999999888887 88999999987776 445554322
Q ss_pred cceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEec
Q 014104 362 SASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 362 ~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~ 424 (430)
. .+..||.. ....-.....++++ +.++++-..+++|+.++++
T Consensus 366 ~----~g~~~g~~-----------------~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 366 V----ASQIDGTP-----------------LEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp C----BSCCCBST-----------------TTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred C----CCcCCCCh-----------------hceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 0 11111100 00111356778884 7778888888999988763
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-09 Score=104.58 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=124.7
Q ss_pred ecCCeEEEEeC-CCeEEEEec-CCCeeEEeeecCCce------------eEEEEecCCCEEE-EEeCCeEEEEEcCCCcc
Q 014104 120 MKRGLILTGVG-DKVMRLWSL-EGYKCVEEYSLPNAA------------SLVDFDFDESKIV-GLIGTRICIWRRNGLRS 184 (430)
Q Consensus 120 ~~~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~ 184 (430)
..++.++.++. ++.|..+|. .+|+.+..+...... ...++ .+..++ ++.++.+..+|.++++.
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~ 137 (571)
T 2ad6_A 60 VIGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKI 137 (571)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCE
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCE
Confidence 35777777887 899999999 899999887654221 01222 344444 77899999999999887
Q ss_pred cccCCCCc-----eeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCCCC------------------
Q 014104 185 VFPSREGT-----FMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHCAP------------------ 235 (430)
Q Consensus 185 ~~~~~~~~-----~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~------------------ 235 (430)
++...... .....-. ..+..+++++. +|.|..+|..+|+.+..+......
T Consensus 138 ~W~~~~~~~~~~~~~~~~P~-v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~ 216 (571)
T 2ad6_A 138 NWEVEVCDPKVGSTLTQAPF-VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQ 216 (571)
T ss_dssp EEEEECCCGGGTCBCCSCCE-EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred EEEecCCCCCccceeccCCE-EECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccc
Confidence 65432211 1110111 12445666665 789999999999998877532110
Q ss_pred -------------------e-EEEEecCC-CEEEEEeCC----------------CeEEEEeCCCCceeEEEecCC-C--
Q 014104 236 -------------------V-TSLSLSED-QLIISGSSL----------------GSIAISGLSSDQRVATLRSTD-C-- 275 (430)
Q Consensus 236 -------------------i-~~~~~~~~-~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~-~-- 275 (430)
+ ..+++.+. ..++.++.+ +.|..+|..+|+.+..++..+ .
T Consensus 217 ~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~ 296 (571)
T 2ad6_A 217 FGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW 296 (571)
T ss_dssp SSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccc
Confidence 0 12455543 566655532 369999999999998886421 1
Q ss_pred -----CCeEEEEEecCCC---EEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 276 -----TGIKTLCYNPCSR---LVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 276 -----~~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
....-+...++|+ .++.++.+|.++++|..+++.+....
T Consensus 297 d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 297 DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp CCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeec
Confidence 1112223335774 57788999999999999999887654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-09 Score=96.22 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=145.5
Q ss_pred cccceeEEEec--CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc-c
Q 014104 111 HSVGVDQCRMK--RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-F 186 (430)
Q Consensus 111 h~~~v~~~~~~--~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~ 186 (430)
+..--.+..|. ++ ++++...++.|..||..+++. ..+..+..+..++++++++.+++. ++.|.+||.++++.. +
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEE
Confidence 33344566773 34 666667789999999988765 445556677889999999955554 788999999877532 1
Q ss_pred -cCCC---CceeeeeEEEEcCCceEEEec------------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-E
Q 014104 187 -PSRE---GTFMKGLCMRYFDPEAVVGCE------------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-I 248 (430)
Q Consensus 187 -~~~~---~~~~~~~~~~~~~~~l~~~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~ 248 (430)
.... ......+.+.+.+. +..++. .+.|..+|.. ++... +..+......++|+|+ +.+ +
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEEEE
Confidence 1111 11122233333444 444431 2345555542 33332 3333445688999976 544 5
Q ss_pred EEeCCCeEEEEeC--CCCcee--EEEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEE
Q 014104 249 SGSSLGSIAISGL--SSDQRV--ATLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYS 322 (430)
Q Consensus 249 ~~~~dg~i~vwd~--~~~~~~--~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~ 322 (430)
+.+.++.|.+||+ .++... +.+.. .....+..++++++|++.++....+.|..||..+++.+..+..+...+++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~ 245 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTS 245 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceE
Confidence 5667889999987 455432 12211 12346889999999998888777889999999999998888877778999
Q ss_pred EEEee-CCCCeEEEEcC
Q 014104 323 LQHLQ-NDTSTLVVGGI 338 (430)
Q Consensus 323 l~~~s-~~~~~l~s~~~ 338 (430)
++ |. |+++.|+.++.
T Consensus 246 ~~-f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 246 CC-FGGKNYSEMYVTCA 261 (297)
T ss_dssp EE-EESGGGCEEEEEEB
T ss_pred EE-EeCCCCCEEEEEcC
Confidence 98 87 88877655543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-13 Score=125.25 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=86.7
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeE-
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIK- 279 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~- 279 (430)
.+..+++++.||.|+.||..+|+.+..+.. +.+.+..+.. +..+++++.|+.|+.||..+|+.+..+.......+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 455589999999999999999999988876 4444443433 457777889999999999999887766531111110
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 280 TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
+..+. .+..+++++.++.|+.||.++|+.+..+..+.. .. ++|++..+++++.|+.|+.||..+|+.+..+..
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~-~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DS-LSPSTSLLYLGRTEYTITMYDTKTRELRWNATY 158 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----cc-ccccCCEEEEEecCCEEEEEECCCCCEEEeEec
Confidence 00111 345677888899999999999999888776531 23 567888999999999999999999998776653
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-09 Score=103.45 Aligned_cols=194 Identities=8% Similarity=-0.022 Sum_probs=127.4
Q ss_pred ecCCeEEEEeC-CCeEEEEec-CCCeeEEeeecCCce------------eEEEEec-CCC----EEEEEeCCeEEEEEcC
Q 014104 120 MKRGLILTGVG-DKVMRLWSL-EGYKCVEEYSLPNAA------------SLVDFDF-DES----KIVGLIGTRICIWRRN 180 (430)
Q Consensus 120 ~~~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~------------~~~~~~~-~~~----~l~~~~~~~i~vwd~~ 180 (430)
..++.++.++. ++.|.-+|. .+|+.+..+...... ..++++| ++. .++++.++.+.-+|.+
T Consensus 60 v~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 60 VVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp EETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred EECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 34677777887 899999999 899999887754221 1245543 333 4448889999999999
Q ss_pred CCcccccCCCCc-----eeeeeEEEEcCCceEEEe------cCCeEEEEECCCCeeeEEeecCCCC--------------
Q 014104 181 GLRSVFPSREGT-----FMKGLCMRYFDPEAVVGC------EDGTARVFDMYSRKCSQIIRMHCAP-------------- 235 (430)
Q Consensus 181 ~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~-------------- 235 (430)
+++.++...... .....-.. .+..+++++ .+|.|+.+|.++|+.+..+......
T Consensus 140 TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~ 218 (599)
T 1w6s_A 140 TGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP 218 (599)
T ss_dssp TCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred CCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccc
Confidence 998765432211 11111111 234466655 3799999999999998777532111
Q ss_pred -----------------------e-EEEEecCC-CEEEEEeCC----------------CeEEEEeCCCCceeEEEecCC
Q 014104 236 -----------------------V-TSLSLSED-QLIISGSSL----------------GSIAISGLSSDQRVATLRSTD 274 (430)
Q Consensus 236 -----------------------i-~~~~~~~~-~~l~~~~~d----------------g~i~vwd~~~~~~~~~~~~~~ 274 (430)
+ ..+++.+. +.++.++.+ +.|..+|..+|+.+..++..+
T Consensus 219 ~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~ 298 (599)
T 1w6s_A 219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP 298 (599)
T ss_dssp GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred cccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCC
Confidence 0 12344443 667766654 489999999999998887532
Q ss_pred CC--------CeEEEEEe-cCC---CEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 275 CT--------GIKTLCYN-PCS---RLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 275 ~~--------~v~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
.. ...-+... .+| ..++.++.+|.++++|.++++.+....
T Consensus 299 ~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 21 11112222 467 467788999999999999999887654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-10 Score=104.71 Aligned_cols=245 Identities=9% Similarity=0.036 Sum_probs=160.9
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecC--------CceeEEEEecC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLP--------NAASLVDFDFD 162 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~--------~~~~~~~~~~~ 162 (430)
..+.++..-..+ .+.+ +++ +++.+. .++.|.+||+.+++.+.++..+ .....+.++||
T Consensus 57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD 134 (368)
T 1mda_H 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence 455566544445 5777 566 666664 3789999999999999998764 24567999999
Q ss_pred CCEEE-EEe--CCeEEE--EEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCC-----CeeeE----
Q 014104 163 ESKIV-GLI--GTRICI--WRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYS-----RKCSQ---- 227 (430)
Q Consensus 163 ~~~l~-~~~--~~~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~-----~~~~~---- 227 (430)
|++++ +.. +..+.+ +|..+ ......... ..+.+.+.. +++.+.||.+.+.|+.+ ++...
T Consensus 135 Gk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~-----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~ 208 (368)
T 1mda_H 135 SACLLFFLFGSSAAAGLSVPGASD-DQLTKSASC-----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG 208 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEE-EEEEECSSC-----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT
T ss_pred CCEEEEEccCCCCeEEEEEEchhh-ceEEECCCc-----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeee
Confidence 99988 443 467888 88877 211111111 112233333 56677888988899886 44331
Q ss_pred EeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc--eeEEEecC------C---CCCeEEEEEecCCCEEEEEeC-
Q 014104 228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ--RVATLRST------D---CTGIKTLCYNPCSRLVFAGTT- 295 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~------~---~~~v~~~~~~~~~~~l~~~~~- 295 (430)
.+.....+. ...++..++..+. +.+.+.|..++. .+..+... + ......++++|+++.++++..
T Consensus 209 ~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 209 AQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp TSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 111122333 3334455555566 999999986532 22222110 0 012222689999998887543
Q ss_pred C--------CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC-eEEEEc-CCCeEEEEEcCCCceEEEEEeccC
Q 014104 296 A--------GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS-TLVVGG-IDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 296 d--------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
. +.+.++|+.+++.+.++.... ...++. ++|||+ .+++.. .++.|.++|+.+++.+.++.....
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~-~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~ 358 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAII-AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEE-ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred ccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEE-ECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC
Confidence 2 356799999999998887653 578888 999998 456665 589999999999999999876443
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.8e-09 Score=91.52 Aligned_cols=196 Identities=8% Similarity=-0.081 Sum_probs=128.0
Q ss_pred CceeEEEEecCCCEEEEE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEEc--CCceEEEecCCeEEEEECCCCeeeE-
Q 014104 152 NAASLVDFDFDESKIVGL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKCSQ- 227 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~- 227 (430)
.....++++++++..++. .++.|.+||.. ++...............+... +...++...++.|..+|.. ++...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 456678889999877755 57899999988 442211111111223334333 3334444447889999987 55432
Q ss_pred EeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 228 IIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 228 ~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
.+......+..+++.++ .++++...++.|..+|.. ++............+..++++++|++.++...++.|..+|. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 22223457889999865 566665567899999987 65542222113457899999999997766666788999998 5
Q ss_pred Cceee-eeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceE
Q 014104 307 MKSLW-ETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 307 ~~~~~-~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~ 353 (430)
++... ....+...+..++ ++++|.+.++....+.|.+||. +++..
T Consensus 176 g~~~~~~~~~~~~~~~~i~-~d~~g~l~v~~~~~~~i~~~~~-~g~~~ 221 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGIT-SGNDGALWFVEIMGNKIGRITT-TGEIS 221 (300)
T ss_dssp CCEEEEECSSTTCCEEEEE-ECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred CcEEEeeCCCCCCCcceEE-ECCCCCEEEEccCCCEEEEEcC-CCcEE
Confidence 55432 1223345678888 8899987777777788999998 45543
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-12 Score=82.52 Aligned_cols=50 Identities=32% Similarity=0.543 Sum_probs=40.5
Q ss_pred CCCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHH
Q 014104 18 SKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLL 67 (430)
Q Consensus 18 ~~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~ 67 (430)
+.+...+..||+|++.+||+||++.++.++++|||+|+.++.++.+|+.+
T Consensus 3 ~~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l 52 (53)
T 1fs1_A 3 NFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (53)
T ss_dssp ------CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred CCCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence 34567889999999999999999999999999999999999999999875
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.32 E-value=2e-09 Score=95.19 Aligned_cols=201 Identities=7% Similarity=0.076 Sum_probs=128.7
Q ss_pred eeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 154 ASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 154 ~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
.....|++++..|+ ...++.|..||.++++........ ....+++.+.+. ++++. ++.|.+||..+++.......
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~-~~~~i~~~~dG~-l~v~~-~~~l~~~d~~~g~~~~~~~~ 91 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA-PVSSVALRQSGG-YVATI-GTKFCALNWKEQSAVVLATV 91 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSS-CEEEEEEBTTSS-EEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCC-ceEEEEECCCCC-EEEEE-CCeEEEEECCCCcEEEEEec
Confidence 34577888766655 345788999999887643222222 223344444444 55555 56899999988765433322
Q ss_pred C----CCCeEEEEecCC-CEEEEEeC-----------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEe
Q 014104 232 H----CAPVTSLSLSED-QLIISGSS-----------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGT 294 (430)
Q Consensus 232 ~----~~~i~~~~~~~~-~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~ 294 (430)
. ...+..++++|+ ++.++... .+.|..+|.. ++...... .......++|+|+++.|+ +.+
T Consensus 92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~--~~~~pngi~~spdg~~lyv~~~ 168 (297)
T 3g4e_A 92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFD--QVDISNGLDWSLDHKIFYYIDS 168 (297)
T ss_dssp CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEE--EESBEEEEEECTTSCEEEEEEG
T ss_pred CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEEEee--ccccccceEEcCCCCEEEEecC
Confidence 1 234788999976 54443321 2345555543 33333222 233578999999998765 555
Q ss_pred CCCeEEEEeC--CCCce-----eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 295 TAGYASCWDL--RTMKS-----LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 295 ~dg~i~i~d~--~~~~~-----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.++.|.+||+ .++.. +..+..+.+....++ ++++|.+.++....+.|..||..+|+.+..+..+..
T Consensus 169 ~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~-~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~ 241 (297)
T 3g4e_A 169 LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMC-IDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVD 241 (297)
T ss_dssp GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEE-EBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSS
T ss_pred CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeE-ECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCC
Confidence 6788999987 44432 223333445678888 999998878777788999999999999988876433
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-09 Score=100.43 Aligned_cols=195 Identities=11% Similarity=0.027 Sum_probs=123.2
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce----------eEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCC
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA----------SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
..++.++.++.++.|..+|..+|+.+..+...... ...++ .++..++++.++.+.-+|.++++.++...
T Consensus 66 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~-~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 66 VSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp EETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred EECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE-ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 45777777777556999999999999888754221 11222 24444448889999999999998665432
Q ss_pred CCc------eeeeeEEEEc---CC-ceEEEe------cCCeEEEEECCCCeeeEEeecCCCCe-----------------
Q 014104 190 EGT------FMKGLCMRYF---DP-EAVVGC------EDGTARVFDMYSRKCSQIIRMHCAPV----------------- 236 (430)
Q Consensus 190 ~~~------~~~~~~~~~~---~~-~l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~i----------------- 236 (430)
... ....-.+... +. .+++++ .+|.|..+|..+|+.+.........+
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 211 1111111111 11 455655 37899999999999887654311000
Q ss_pred ------------------------EEEEecCC-CEEEEEeC--------------------C----CeEEEEeCCCCcee
Q 014104 237 ------------------------TSLSLSED-QLIISGSS--------------------L----GSIAISGLSSDQRV 267 (430)
Q Consensus 237 ------------------------~~~~~~~~-~~l~~~~~--------------------d----g~i~vwd~~~~~~~ 267 (430)
..+++++. +.++.++. | +.|..+|..+|+.+
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~ 304 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence 12344443 56665552 2 68999999999999
Q ss_pred EEEecC-CCC-------CeEEEEEe-cCCC---EEEEEeCCCeEEEEeCCCCceeeeeec
Q 014104 268 ATLRST-DCT-------GIKTLCYN-PCSR---LVFAGTTAGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 268 ~~~~~~-~~~-------~v~~~~~~-~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~ 315 (430)
..++.. |.. ...-+... .+|+ .++.++.+|.++++|.++++.+.....
T Consensus 305 W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred EEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 888642 210 11112222 4674 788899999999999999998876544
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.8e-10 Score=110.66 Aligned_cols=236 Identities=13% Similarity=0.112 Sum_probs=149.1
Q ss_pred ccccceeEEEe-cCC-eEEE-----EeCCCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeCC--------
Q 014104 110 AHSVGVDQCRM-KRG-LILT-----GVGDKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIGT-------- 172 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~~-------- 172 (430)
+|...+..+.| +|| +||- |+...+|++||+.+++.+.... +.. ...++|+ |++.|+ ++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 35556777788 566 5553 2333579999999998665321 112 3457899 999888 66553
Q ss_pred -----eEEEEEcCCCcc----cccCCC--CceeeeeEEEEcCCceEEEec----CCeEEEEECCCCe-eeEEeecCCCCe
Q 014104 173 -----RICIWRRNGLRS----VFPSRE--GTFMKGLCMRYFDPEAVVGCE----DGTARVFDMYSRK-CSQIIRMHCAPV 236 (430)
Q Consensus 173 -----~i~vwd~~~~~~----~~~~~~--~~~~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~-~~~~~~~~~~~i 236 (430)
.|++|++.+... ++.... ........+++++..++.... +..|+++|+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 399999987652 222222 112233556666776543332 2589999998764 455566666665
Q ss_pred EEEEecCCC-EEEEEeCC---CeEEEEeCCCCce--eEEEecCCCCCeEEEEEecCCCEEEEEeC-CC--eEEEEeCCCC
Q 014104 237 TSLSLSEDQ-LIISGSSL---GSIAISGLSSDQR--VATLRSTDCTGIKTLCYNPCSRLVFAGTT-AG--YASCWDLRTM 307 (430)
Q Consensus 237 ~~~~~~~~~-~l~~~~~d---g~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~ 307 (430)
.....++++ +++....+ +.|..+|+.++.. ...+.. +...+. .|+++++.|+.... ++ .|++||+..+
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP-ERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC-CCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec-CCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555333454 44444443 6899999987654 344544 444454 88999998876654 43 6899998844
Q ss_pred ceeeeeec-CCCceEEEEEeeCCCCeEEEEcCC----CeEEEEEcCCCce
Q 014104 308 KSLWETRI-SPNVVYSLQHLQNDTSTLVVGGID----GVLRVLDQNTGEV 352 (430)
Q Consensus 308 ~~~~~~~~-~~~~v~~l~~~s~~~~~l~s~~~d----g~i~vwd~~~~~~ 352 (430)
....+.. ..+.+..+. +++++..++....+ +.++.||+.+++.
T Consensus 361 -~~~~l~~p~~~~~~~~~-~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 361 -RVREVALPGLGSVSGFN-GKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp -EEEEECCSSSSEEEECC-CCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred -eeEEeecCCCceEEeee-cCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 3444432 345677776 78888876655444 8999999987764
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-11 Score=107.54 Aligned_cols=148 Identities=15% Similarity=0.031 Sum_probs=111.4
Q ss_pred eeeeEEEEcCCceEEEecCCeEEEEECCCCe-----------eeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 194 MKGLCMRYFDPEAVVGCEDGTARVFDMYSRK-----------CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLS 262 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~ 262 (430)
...+++......+++|+.+ .+.+|++...+ ..... .+.+ |+.++| .+.+++++ .++.|++||+.
T Consensus 40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESS
T ss_pred ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEch
Confidence 4456666667778888887 56669865432 11222 3566 999999 66888888 88999999998
Q ss_pred CCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeE
Q 014104 263 SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i 342 (430)
+......... +...+.++.+.+. .+++++.||.|.+||+.+++... +...|.+++ |+|+| ++.|..||++
T Consensus 115 sl~~~~~~~~-~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~-WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 115 ELSEFRTVTS-FEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFD-VTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp STTCEEEEEE-CSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEE-ECSSE--EEEEETTSCE
T ss_pred hhhccCccce-eecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEE-EcCCc--eEEEEcCCcE
Confidence 7766555554 6667888777643 48888999999999999877643 346799998 99999 6778899999
Q ss_pred EEEEcCCCce--EEEE
Q 014104 343 RVLDQNTGEV--LSRC 356 (430)
Q Consensus 343 ~vwd~~~~~~--~~~~ 356 (430)
++|+...++. .+++
T Consensus 185 ~~~~~~~~~~~~k~~I 200 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEF 200 (388)
T ss_dssp EEEEEETTEEEEEEEE
T ss_pred EEEcCCCcccccccee
Confidence 9999887765 5555
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.2e-09 Score=92.16 Aligned_cols=214 Identities=11% Similarity=0.043 Sum_probs=139.8
Q ss_pred eeEEEe-cC-C-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc-ccCCC
Q 014104 115 VDQCRM-KR-G-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-FPSRE 190 (430)
Q Consensus 115 v~~~~~-~~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~ 190 (430)
.....| ++ + ++++...++.|..||..+++.. .+..+..+..+.++++++.++++ +..|.+||.++++.. +....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~-~~gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIAS-DDGLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSS
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEE-CCCEEEEECCCCcEEEEeeCC
Confidence 456667 43 4 6667777899999999887643 34445667778999999888766 455999999877632 21111
Q ss_pred ----CceeeeeEEEEcCCceEEEec-------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE-EEEeCCCeEE
Q 014104 191 ----GTFMKGLCMRYFDPEAVVGCE-------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI-ISGSSLGSIA 257 (430)
Q Consensus 191 ----~~~~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l-~~~~~dg~i~ 257 (430)
......+.+.+.+. ++.++. .+.|..+| +++... +..+......++|+|+ +.+ ++.+.++.|.
T Consensus 129 ~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp TTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 11222333444444 444442 25666667 455433 3223345678999976 545 4445678999
Q ss_pred EEeCC--CC-ce-----eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEee-C
Q 014104 258 ISGLS--SD-QR-----VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQ-N 328 (430)
Q Consensus 258 vwd~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s-~ 328 (430)
+||+. ++ .. ...+.. ....+..++++++|++.++...++.|.+||. +++.+..+..+...+.+++ |+ +
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~-~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~a-f~g~ 281 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPA-FIGP 281 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEE-EEST
T ss_pred EEEcccccCCcccCceEEEECCC-CCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEE-EecC
Confidence 99986 55 32 222221 2346788999999987777766788999998 5777777777766789998 87 8
Q ss_pred CCCeEEEEc
Q 014104 329 DTSTLVVGG 337 (430)
Q Consensus 329 ~~~~l~s~~ 337 (430)
+++.|+.++
T Consensus 282 d~~~L~vt~ 290 (326)
T 2ghs_A 282 DASRLLVTS 290 (326)
T ss_dssp TSCEEEEEE
T ss_pred CCCEEEEEe
Confidence 887665544
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-08 Score=98.18 Aligned_cols=240 Identities=14% Similarity=0.075 Sum_probs=156.7
Q ss_pred EEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCC-----ceeEEEEecCCCEEEEEe------CCeEEEEEcCCCcccc
Q 014104 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN-----AASLVDFDFDESKIVGLI------GTRICIWRRNGLRSVF 186 (430)
Q Consensus 118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~ 186 (430)
+.+.++.++.++.|+.+..+|..+|+.+..+.... .....-.-.++..++++. ++.|..+|.++++.++
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W 190 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEE
Confidence 34456788889999999999999999988776543 111111112444444554 7899999999888654
Q ss_pred cCCCCcee---------------------------------------eeeEEEEcCCceEEEecC---------------
Q 014104 187 PSREGTFM---------------------------------------KGLCMRYFDPEAVVGCED--------------- 212 (430)
Q Consensus 187 ~~~~~~~~---------------------------------------~~~~~~~~~~~l~~~~~d--------------- 212 (430)
........ ...++......++.+..+
T Consensus 191 ~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y 270 (571)
T 2ad6_A 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCcee
Confidence 32211100 012222223345555432
Q ss_pred -CeEEEEECCCCeeeEEeecC----------CCCeEEEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCC--
Q 014104 213 -GTARVFDMYSRKCSQIIRMH----------CAPVTSLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRSTDC-- 275 (430)
Q Consensus 213 -g~i~vwd~~~~~~~~~~~~~----------~~~i~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-- 275 (430)
+.|..+|..+|+.+..++.. ..++. +... .+ ..++.++.+|.+.++|..+|+.+..++....
T Consensus 271 ~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~ 349 (571)
T 2ad6_A 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVN 349 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred EEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcc
Confidence 36999999999998877632 12221 2221 23 2567788999999999999999877653220
Q ss_pred ----------CCe--------------------------EEEEEecCCCEEEEEe-------------------------
Q 014104 276 ----------TGI--------------------------KTLCYNPCSRLVFAGT------------------------- 294 (430)
Q Consensus 276 ----------~~v--------------------------~~~~~~~~~~~l~~~~------------------------- 294 (430)
.++ ..++++|+..++++..
T Consensus 350 w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 429 (571)
T 2ad6_A 350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL 429 (571)
T ss_dssp SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccc
Confidence 111 2467888877777653
Q ss_pred ------------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc
Q 014104 295 ------------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 295 ------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
.+|.|..||+.+++.+.++.... .+.+.. +...+..++.++.||.|+.+|.++|+.+.++....
T Consensus 430 ~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~-~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 430 AMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGT-LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred eeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-Ccccee-EEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 34789999999999988876432 222222 23346678889999999999999999999887643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.4e-10 Score=100.85 Aligned_cols=249 Identities=12% Similarity=0.048 Sum_probs=159.1
Q ss_pred cccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 111 HSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 111 h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
+...+.++.. +++.+..++.+ |..+|. +++.+..+..+... ....+. ++...+++.++.+..+|.+ ++.....
T Consensus 58 ~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~-~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF-EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp GGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE-TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred CCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE-CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 3444566666 46677777666 888886 56655444433221 122333 5555557778999999988 5543322
Q ss_pred CC-CceeeeeEEEEc-CCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCce
Q 014104 189 RE-GTFMKGLCMRYF-DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR 266 (430)
Q Consensus 189 ~~-~~~~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 266 (430)
.. .... .+.... +..++.++.++.|..+|.. ++.+..+......+.++...++..+..++ +.+..+| .+++.
T Consensus 133 ~~~~~~~--~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 133 KTKKAIY--ATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp ECSSCCC--SCCEECTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTSCE
T ss_pred cCCCcee--eeeEEcCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCCcE
Confidence 11 1111 122223 4448888888999999998 88777776555666777776555566666 8899999 77887
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 267 VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 267 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
...+.. ....+.++..+++|. |..++.++.+..+|. +++.+..+......+.++. ..+++ .|..++.+|.|..+|
T Consensus 207 ~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~-~~~~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 207 KWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPV-IGNTD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp EEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCE-ECTTS-CEEEECTTCEEEEEC
T ss_pred EEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccce-EcCCC-eEEEecCCCCEEEEC
Confidence 777764 445688888888775 555667788988884 5666666655444444554 55455 577788888999999
Q ss_pred cCCCceEEEEEeccCcceeeeccCCceEEE
Q 014104 347 QNTGEVLSRCVMDIGSASSSSNKVSGVIER 376 (430)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~ 376 (430)
. +++.+..+......+..+....+|.+.+
T Consensus 282 ~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~ 310 (330)
T 3hxj_A 282 P-DGTEKWNFETGSWIIATPVIDENGTIYF 310 (330)
T ss_dssp T-TSCEEEEEECSSCCCSCCEECTTCCEEE
T ss_pred C-CCcEEEEEEcCCccccceEEcCCCEEEE
Confidence 6 6888777765444444444445555543
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-09 Score=92.87 Aligned_cols=232 Identities=10% Similarity=0.037 Sum_probs=146.3
Q ss_pred CCEeEEEEeccccceeEEEe-cCC--eEEEEeCCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEEEEe-CCeEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRM-KRG--LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLI-GTRIC 175 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~i~ 175 (430)
+...+..+..+........| +++ +++++..++.|..|+. +++. ..+. .......++++++|+.+++.. ++.|.
T Consensus 33 ~~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~ 110 (305)
T 3dr2_A 33 GDARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAIT 110 (305)
T ss_dssp TTCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred CCCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEE
Confidence 34455566666666777887 454 5777778899999998 4443 3333 334567799999999777654 47899
Q ss_pred EEEcCCCcccccCC-CCc---eeeeeEEEEcCCceEE----Eec-------------CCeEEEEECCCCeeeEEeecCCC
Q 014104 176 IWRRNGLRSVFPSR-EGT---FMKGLCMRYFDPEAVV----GCE-------------DGTARVFDMYSRKCSQIIRMHCA 234 (430)
Q Consensus 176 vwd~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~ 234 (430)
+|+.+.....+... .+. ....+.+.+.+...++ |.. .+.|..+|..+++..... ...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 111 RSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp EECTTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred EECCCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 99987332222111 111 1122444444443443 321 356888887667654333 334
Q ss_pred CeEEEEecCC-CEEEEEeCC------CeEEEEeCCCCce--eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 235 PVTSLSLSED-QLIISGSSL------GSIAISGLSSDQR--VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~~~~d------g~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
....++|+|+ +.++.+... +.|.+||+..+.. ...+.......+..++++++|++ .+++.+| |.+||..
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~ 266 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD 266 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSSE-EEEECTT
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCCc-EEEECCC
Confidence 5678999987 556666554 7899999876541 11222112335667899999994 4444554 9999984
Q ss_pred CCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 306 TMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 306 ~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
++.+..+..+. .+.+++ |+++++.|+.++.++.
T Consensus 267 -g~~~~~~~~~~-~~~~~~-f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 267 -GQLLGHIPTPG-TASNCT-FDQAQQRLFITGGPCL 299 (305)
T ss_dssp -SCEEEEEECSS-CCCEEE-ECTTSCEEEEEETTEE
T ss_pred -CCEEEEEECCC-ceeEEE-EeCCCCEEEEEcCCeE
Confidence 77777776554 578888 8899988888776643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-10 Score=100.05 Aligned_cols=246 Identities=6% Similarity=-0.076 Sum_probs=160.6
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------eCCeEEEEEcCCCcccccCCC--------Cce
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLRSVFPSRE--------GTF 193 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~~~~i~vwd~~~~~~~~~~~~--------~~~ 193 (430)
+|.+.|..+++.+.++...... .+.++||++.++ +. .++.|.+||+.+.+.+..... +..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~ 125 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPR 125 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCC
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCC
Confidence 8889999999999999876555 799999999988 43 368899999999875433211 122
Q ss_pred eeeeEEEEcCCceEEEec--CCeEEE--EECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC-----C
Q 014104 194 MKGLCMRYFDPEAVVGCE--DGTARV--FDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS-----D 264 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~ 264 (430)
...+.+++++..++++.. +..+.+ +|+.+ +..+..- +.+ .+.......+++.+.|+.+.+.|+.+ +
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~ 200 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SCF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAG 200 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SCC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCE
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cce-EEccCCCeEEEEEcCCCCEEEEECccccccCC
Confidence 345778888888888774 467888 99876 4444321 111 11111235666777889988899886 3
Q ss_pred ceeEE----EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc--eeeeeec-------C---CCceEEEEEeeC
Q 014104 265 QRVAT----LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK--SLWETRI-------S---PNVVYSLQHLQN 328 (430)
Q Consensus 265 ~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~-------~---~~~v~~l~~~s~ 328 (430)
+.... +.. ...+. . .+++..++..+. +.|.+.|+.... .+..+.. + ......++ ++|
T Consensus 201 ~v~~~~t~~i~v-g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~-~s~ 273 (368)
T 1mda_H 201 IVGAQCTGAQNC-SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA-KLK 273 (368)
T ss_dssp ECCCCSCTTSCB-CSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE-EET
T ss_pred eEEEEeeeeeeC-CCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeE-EcC
Confidence 33211 111 12233 3 666666666566 889999986532 2222211 0 01111255 899
Q ss_pred CCCeEEEEcC---------CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCe
Q 014104 329 DTSTLVVGGI---------DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPI 399 (430)
Q Consensus 329 ~~~~l~s~~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v 399 (430)
+++.++.+.. ++.+.++|+.+++.+.++.... ..
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-------------------------------------~p 316 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-------------------------------------DS 316 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-------------------------------------EE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-------------------------------------Cc
Confidence 9998876543 2356699999999998887532 24
Q ss_pred eEEEE--cCe-EEEEee-CCCeEEEEEecCCCc
Q 014104 400 TCLAV--GMK-KVVTTH-NSKYIRLWKFNYSDK 428 (430)
Q Consensus 400 ~~v~~--~~~-~l~t~~-~Dg~v~vw~~~~~~~ 428 (430)
.++++ ||+ .+++.. .++.|.|+|+.+++.
T Consensus 317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kv 349 (368)
T 1mda_H 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred ceEEECCCCCEEEEEccCCCCeEEEEECCCCcE
Confidence 45555 565 467777 699999999988753
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-08 Score=89.23 Aligned_cols=196 Identities=11% Similarity=0.029 Sum_probs=123.4
Q ss_pred eEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec-
Q 014104 155 SLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM- 231 (430)
Q Consensus 155 ~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~- 231 (430)
....|+++++.++ ...++.|..||.++++........ ....+.+.+.+. +++++.+ .|.+||..+++.......
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~-~v~~i~~~~dg~-l~v~~~~-gl~~~d~~~g~~~~~~~~~ 128 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPF-MGSALAKISDSK-QLIASDD-GLFLRDTATGVLTLHAELE 128 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS-CEEEEEEEETTE-EEEEETT-EEEEEETTTCCEEEEECSS
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCC-cceEEEEeCCCe-EEEEECC-CEEEEECCCCcEEEEeeCC
Confidence 4467888766655 445789999999887643222222 233344555544 4445544 499999988775433221
Q ss_pred --C-CCCeEEEEecCC-CEEEEEeC------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE-eCCCeEE
Q 014104 232 --H-CAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYAS 300 (430)
Q Consensus 232 --~-~~~i~~~~~~~~-~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~ 300 (430)
. ...+.+++++|+ +++++... .+.|..+| +++...... .......++|+|+|+.++.+ ..++.|.
T Consensus 129 ~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~--~~~~~~~i~~s~dg~~lyv~~~~~~~I~ 204 (326)
T 2ghs_A 129 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA--DISIPNSICFSPDGTTGYFVDTKVNRLM 204 (326)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE--EESSEEEEEECTTSCEEEEEETTTCEEE
T ss_pred CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC--CCcccCCeEEcCCCCEEEEEECCCCEEE
Confidence 1 235789999976 54443322 25666666 455433222 23357889999999877554 4578899
Q ss_pred EEeCC--CC-ce-----eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 301 CWDLR--TM-KS-----LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 301 i~d~~--~~-~~-----~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
+||+. ++ +. +..+........++. ++++|.+.++...++.|.+||. +++.+..+..+
T Consensus 205 ~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~-~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~ 269 (326)
T 2ghs_A 205 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSV-CDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP 269 (326)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEE-ECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred EEEcccccCCcccCceEEEECCCCCCCCCeeE-ECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECC
Confidence 99986 55 32 222222345567787 8999987777766789999998 57777776643
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9.7e-09 Score=86.54 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=136.2
Q ss_pred EEEEeccccc--eeEEEecCC-eEEEEeCCC--eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEE
Q 014104 105 IDQWKAHSVG--VDQCRMKRG-LILTGVGDK--VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIW 177 (430)
Q Consensus 105 ~~~l~~h~~~--v~~~~~~~~-~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vw 177 (430)
++++ .|... ...+.|.++ ++.+.+.+| .|+++|+.+++.+..+..+.......+.++++.|. ...++.+.++
T Consensus 34 v~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEe-cCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 4455 45443 467888877 556666665 99999999999999998876665555666677777 4458999999
Q ss_pred EcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC--C---CCeEEEEecCCCEEEEEeC
Q 014104 178 RRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--C---APVTSLSLSEDQLIISGSS 252 (430)
Q Consensus 178 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~---~~i~~~~~~~~~~l~~~~~ 252 (430)
|.++.+.+-....+. ....+++++..++.+..++.|.++|..+.+.+..+... . ..++.+.+..+...+....
T Consensus 113 D~~t~~~~~ti~~~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~~G~lyan~w~ 190 (262)
T 3nol_A 113 NIRNLRQVRSFNYDG--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWVDGEIFANVWQ 190 (262)
T ss_dssp ETTTCCEEEEEECSS--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred ECccCcEEEEEECCC--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEECCEEEEEEcc
Confidence 999887543222221 23456677777777777889999999999888777642 1 3345677776665555557
Q ss_pred CCeEEEEeCCCCceeEEEecC-----------CCCCeEEEEEecCCCEEEEEeCC
Q 014104 253 LGSIAISGLSSDQRVATLRST-----------DCTGIKTLCYNPCSRLVFAGTTA 296 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d 296 (430)
++.|.+.|..+++.+..+... ...-...++|+|+++.|++.+..
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 889999999999999888742 01256889999998888776653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-07 Score=93.81 Aligned_cols=240 Identities=11% Similarity=0.115 Sum_probs=158.5
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-----eeEEEEecCCCEEEEEe------CCeEEEEEcCCCccccc
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----ASLVDFDFDESKIVGLI------GTRICIWRRNGLRSVFP 187 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~ 187 (430)
.+.++.++.++.|+.|..+|..+|+.+..+..... ....-.-.++..+++.. ++.|..+|.++++.++.
T Consensus 114 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 193 (668)
T 1kv9_A 114 ALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR 193 (668)
T ss_dssp EEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEE
Confidence 34566888899999999999999999988775311 11100112444444433 58899999999886543
Q ss_pred CCCC----c----------------------------eeeeeEEEEcCCceEEEecCC-------------------eEE
Q 014104 188 SREG----T----------------------------FMKGLCMRYFDPEAVVGCEDG-------------------TAR 216 (430)
Q Consensus 188 ~~~~----~----------------------------~~~~~~~~~~~~~l~~~~~dg-------------------~i~ 216 (430)
.... . .-....+.+....++.++.++ .|.
T Consensus 194 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~ 273 (668)
T 1kv9_A 194 FYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSIL 273 (668)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 2210 0 000123333345577777666 499
Q ss_pred EEECCCCeeeEEeec--CC-------CCeEEEEec-CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCC--------
Q 014104 217 VFDMYSRKCSQIIRM--HC-------APVTSLSLS-ED---QLIISGSSLGSIAISGLSSDQRVATLRSTDC-------- 275 (430)
Q Consensus 217 vwd~~~~~~~~~~~~--~~-------~~i~~~~~~-~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------- 275 (430)
.+|..+|+.+..++. |. .+.....+. .+ ..++.++.+|.+.++|..+|+.+...+....
T Consensus 274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~ 353 (668)
T 1kv9_A 274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL 353 (668)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence 999999999888764 21 222222222 33 2688999999999999999998855432110
Q ss_pred ---CCe------------------------EEEEEecCCCEEEEEe----------------------------------
Q 014104 276 ---TGI------------------------KTLCYNPCSRLVFAGT---------------------------------- 294 (430)
Q Consensus 276 ---~~v------------------------~~~~~~~~~~~l~~~~---------------------------------- 294 (430)
.++ ..++++|+...+++..
T Consensus 354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 433 (668)
T 1kv9_A 354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA 433 (668)
T ss_dssp TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence 000 1267888777666421
Q ss_pred --CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEecc
Q 014104 295 --TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 295 --~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
.+|.|..||+.+++.+.+...+. ...... ....+.+++.++.||.|+.||.++|+.+..+....
T Consensus 434 ~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~-~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 434 AVVSGALLAWDPVKQKAAWKVPYPT-HWNGGT-LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp GGCEEEEEEEETTTTEEEEEEEESS-SCCCCE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCccceEEEEeCCCCcEEEEccCCC-CCcCce-eEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 23789999999999988876543 233222 44567889999999999999999999999988653
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-08 Score=83.70 Aligned_cols=189 Identities=12% Similarity=0.070 Sum_probs=136.9
Q ss_pred eEEEEecccc--ceeEEEecCC-eEEEEeCC--CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEE
Q 014104 104 DIDQWKAHSV--GVDQCRMKRG-LILTGVGD--KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICI 176 (430)
Q Consensus 104 ~~~~l~~h~~--~v~~~~~~~~-~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~v 176 (430)
.+.++ .|.. -...+.|.++ ++.+.+.+ ..|+++|+.+++.+..+..+.......+.+.++.|. ...++.+.+
T Consensus 11 v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFV 89 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEE
Confidence 34455 5654 3558899888 55555554 499999999999999998876665555666677776 455899999
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC-----CCeEEEEecCCCEEEEEe
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISGS 251 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~ 251 (430)
||.++.+.+-....+. ....++.++..|+.+..++.|.++|..+.+.+..+.... ..++.+.+..+..++...
T Consensus 90 ~D~~tl~~~~ti~~~~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw 167 (243)
T 3mbr_X 90 YDLATLTPRARFRYPG--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVW 167 (243)
T ss_dssp EETTTTEEEEEEECSS--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET
T ss_pred EECCcCcEEEEEeCCC--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEEC
Confidence 9999987543222221 235666778778887789999999999998888776421 345677777666555555
Q ss_pred CCCeEEEEeCCCCceeEEEecC------------CCCCeEEEEEecCCCEEEEEeC
Q 014104 252 SLGSIAISGLSSDQRVATLRST------------DCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 252 ~dg~i~vwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
.+..|.+.|..+++.+..+... ...-.+.++++|+++.|++.+.
T Consensus 168 ~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 168 LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 7889999999999999887732 1125688999998887776654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=6.3e-09 Score=103.25 Aligned_cols=197 Identities=10% Similarity=0.067 Sum_probs=127.0
Q ss_pred eeEEEEecCCCEEE-EEe-C----CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC-------------e
Q 014104 154 ASLVDFDFDESKIV-GLI-G----TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG-------------T 214 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~-~----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-------------~ 214 (430)
...++|+|||++|+ +.. . ..|++||+++++.+............+|+ ++..|+.++.+. .
T Consensus 131 l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~ 209 (693)
T 3iuj_A 131 LDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK 209 (693)
T ss_dssp EEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred EEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence 44578999999988 332 2 46999999998854322111112456788 888888887774 4
Q ss_pred EEEEECCCCee----eEEeec-CCCCeEEEEecCC-CEEEE-Ee---CCCeEEEEeCCCCc-eeEEEecCCCCCeEEEEE
Q 014104 215 ARVFDMYSRKC----SQIIRM-HCAPVTSLSLSED-QLIIS-GS---SLGSIAISGLSSDQ-RVATLRSTDCTGIKTLCY 283 (430)
Q Consensus 215 i~vwd~~~~~~----~~~~~~-~~~~i~~~~~~~~-~~l~~-~~---~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~ 283 (430)
|++|++.++.. +..... |...+..+.++|+ ++++. .+ .+..|.++|+.++. ....+.. +....... +
T Consensus 210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~~~~~~~-~ 287 (693)
T 3iuj_A 210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DLDADVSL-V 287 (693)
T ss_dssp EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SSSSCEEE-E
T ss_pred EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CCCceEEE-E
Confidence 99999987643 222233 4456788999986 55543 33 23589999998764 3445554 34444444 6
Q ss_pred ecCCCEEE-EEeCC---CeEEEEeCCCCce--eeeeecCCCceEEEEEeeCCCCeEEEEcCCC---eEEEEEcCCCceEE
Q 014104 284 NPCSRLVF-AGTTA---GYASCWDLRTMKS--LWETRISPNVVYSLQHLQNDTSTLVVGGIDG---VLRVLDQNTGEVLS 354 (430)
Q Consensus 284 ~~~~~~l~-~~~~d---g~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg---~i~vwd~~~~~~~~ 354 (430)
+++|..|+ ....+ +.|..+|+.++.. ...+..|...+. . ++++++.|+....++ .|++||+. +....
T Consensus 288 ~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~-~s~~g~~lv~~~~~~g~~~l~~~d~~-g~~~~ 363 (693)
T 3iuj_A 288 DNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T-VHSGSGYLFAEYMVDATARVEQFDYE-GKRVR 363 (693)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E-EEEETTEEEEEEEETTEEEEEEECTT-SCEEE
T ss_pred eccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E-EEEECCEEEEEEEECCeeEEEEEECC-CCeeE
Confidence 66666555 44333 6799999987654 345556665554 5 888898887766443 68999987 44455
Q ss_pred EEE
Q 014104 355 RCV 357 (430)
Q Consensus 355 ~~~ 357 (430)
.+.
T Consensus 364 ~l~ 366 (693)
T 3iuj_A 364 EVA 366 (693)
T ss_dssp EEC
T ss_pred Eee
Confidence 554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-07 Score=91.77 Aligned_cols=234 Identities=15% Similarity=0.121 Sum_probs=152.0
Q ss_pred EEEEeCCCeEEEEecCCCeeEEeeecCC-----ceeEEEEecCCCEEEEE------eCCeEEEEEcCCCcccccCCCCce
Q 014104 125 ILTGVGDKVMRLWSLEGYKCVEEYSLPN-----AASLVDFDFDESKIVGL------IGTRICIWRRNGLRSVFPSREGTF 193 (430)
Q Consensus 125 l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~------~~~~i~vwd~~~~~~~~~~~~~~~ 193 (430)
++.++.|+.+..+|..+|+.+....... .....-.-.++..++++ .++.|.-+|.++++.++.......
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 9999999999999999999988776533 11111111245444444 378999999999886543222110
Q ss_pred e---------------------------------------eeeEEEEcCCceEEEecC----------------CeEEEE
Q 014104 194 M---------------------------------------KGLCMRYFDPEAVVGCED----------------GTARVF 218 (430)
Q Consensus 194 ~---------------------------------------~~~~~~~~~~~l~~~~~d----------------g~i~vw 218 (430)
. ....+......++.+..+ +.|..+
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al 283 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR 283 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence 0 011222233446666654 489999
Q ss_pred ECCCCeeeEEeecCC----------CCeEEEEec--CC---CEEEEEeCCCeEEEEeCCCCceeEEEecCC---------
Q 014104 219 DMYSRKCSQIIRMHC----------APVTSLSLS--ED---QLIISGSSLGSIAISGLSSDQRVATLRSTD--------- 274 (430)
Q Consensus 219 d~~~~~~~~~~~~~~----------~~i~~~~~~--~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------- 274 (430)
|..+|+.+..++... .++. +... .+ ..++.++.+|.+.++|.++|+.+.......
T Consensus 284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~ 362 (599)
T 1w6s_A 284 DADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD 362 (599)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred eCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc
Confidence 999999988776432 1222 2321 23 367778899999999999999987765211
Q ss_pred ---CCCe--------------------------EEEEEecCCCEEEEEe-------------------------------
Q 014104 275 ---CTGI--------------------------KTLCYNPCSRLVFAGT------------------------------- 294 (430)
Q Consensus 275 ---~~~v--------------------------~~~~~~~~~~~l~~~~------------------------------- 294 (430)
..++ ..++++|+..++++..
T Consensus 363 ~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p 442 (599)
T 1w6s_A 363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP 442 (599)
T ss_dssp TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred cCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCC
Confidence 0011 2456777766665431
Q ss_pred --------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 295 --------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 295 --------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
..|.|..||+.+++.+.+..... +..+-. ....+.+++.++.||.++.||.++|+.+.++.....
T Consensus 443 ~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~-~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 443 KGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGT-MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp TSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcc-eEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCC
Confidence 34789999999999888765322 121111 223567788899999999999999999999876443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.7e-08 Score=82.49 Aligned_cols=202 Identities=9% Similarity=-0.002 Sum_probs=141.9
Q ss_pred eEEEEecccc--ceeEEEecC-CeEEEEe-C--CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEE
Q 014104 104 DIDQWKAHSV--GVDQCRMKR-GLILTGV-G--DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRIC 175 (430)
Q Consensus 104 ~~~~l~~h~~--~v~~~~~~~-~~l~s~~-~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~ 175 (430)
.+.++ .|.. ....+.|++ +.|+.++ . ++.|.+.|+.+++.+..+..+.......+.++++.|. .-.++.+.
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~ 89 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGF 89 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEE
T ss_pred EEEEE-ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEE
Confidence 34455 3543 357888854 7444443 2 5899999999999999988655444445555677776 44478999
Q ss_pred EEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC-----CCeEEEEecCCCEEEEE
Q 014104 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISG 250 (430)
Q Consensus 176 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~ 250 (430)
++|.++.+.+-....+ ......+++++..++++..++.|.++|..+.+.+..+.... ..++.+.+.++...+..
T Consensus 90 viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~ 168 (266)
T 2iwa_A 90 IYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANI 168 (266)
T ss_dssp EEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEE
T ss_pred EEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEec
Confidence 9999988754333222 11235677788888877788999999999998887776321 23667888755445555
Q ss_pred eCCCeEEEEeCCCCceeEEEecC------------CCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCCC
Q 014104 251 SSLGSIAISGLSSDQRVATLRST------------DCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRTM 307 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~ 307 (430)
..++.|.+.|..+++.+..+... .......++|+|+++.++ ++...+.|...++...
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 56889999999999999888731 013568999999987555 5556788888887654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.6e-08 Score=88.27 Aligned_cols=200 Identities=11% Similarity=0.080 Sum_probs=122.7
Q ss_pred CceeEEEEecCCCEEEEE---eCCeEEEEEcCCCccc-cc----CCCCceeeeeEEEEcCC-ceEEEec------CCeEE
Q 014104 152 NAASLVDFDFDESKIVGL---IGTRICIWRRNGLRSV-FP----SREGTFMKGLCMRYFDP-EAVVGCE------DGTAR 216 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~---~~~~i~vwd~~~~~~~-~~----~~~~~~~~~~~~~~~~~-~l~~~~~------dg~i~ 216 (430)
.....++++++++.+++. .++.+++|.+.+++.. +. ....+...+..+..+.. .|.+... ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 455667788888777643 1232444444333321 11 11122334455555432 2544432 47899
Q ss_pred EEECCCCeeeEEeecC------CCCeEEEEecC-CCEE-EEEe---CCCeEEEEeCCCCceeEEEecC------------
Q 014104 217 VFDMYSRKCSQIIRMH------CAPVTSLSLSE-DQLI-ISGS---SLGSIAISGLSSDQRVATLRST------------ 273 (430)
Q Consensus 217 vwd~~~~~~~~~~~~~------~~~i~~~~~~~-~~~l-~~~~---~dg~i~vwd~~~~~~~~~~~~~------------ 273 (430)
+||+.+++.+..+... ...+..+++++ +..+ ++.. .++.|.+||+.+++..+.+..+
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp EEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEE
T ss_pred EEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeE
Confidence 9999999877766532 23468899985 3444 4444 5789999999888776655320
Q ss_pred ----------------CCCCeEEEEEecCCCEEEEEeCCC-eEEEEeCCC---Cc-----eee--eeecCCCceEEEEEe
Q 014104 274 ----------------DCTGIKTLCYNPCSRLVFAGTTAG-YASCWDLRT---MK-----SLW--ETRISPNVVYSLQHL 326 (430)
Q Consensus 274 ----------------~~~~v~~~~~~~~~~~l~~~~~dg-~i~i~d~~~---~~-----~~~--~~~~~~~~v~~l~~~ 326 (430)
....+..++|+|+|+.|+.+..++ .+..++... +. ... ...++.+....++ +
T Consensus 177 ~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia-~ 255 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGIS-I 255 (343)
T ss_dssp TTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEE-E
T ss_pred CCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEE-E
Confidence 002368899999999888877665 555555321 11 011 1123334556777 9
Q ss_pred eCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 327 QNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 327 s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
+++|.++++...++.|.+||..+|+.
T Consensus 256 d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 256 DKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp CTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred CCCCCEEEEccCCCeEEEEECCCCCE
Confidence 99999999998999999999856754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-08 Score=85.23 Aligned_cols=187 Identities=10% Similarity=0.082 Sum_probs=133.8
Q ss_pred EEEEeccccc--eeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEc
Q 014104 105 IDQWKAHSVG--VDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRR 179 (430)
Q Consensus 105 ~~~l~~h~~~--v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~ 179 (430)
++++ .|... ...+.|.++ +.++.+.+|.|+++|+++++.+..+ .+.......+.++++.|. ...++.+.+||.
T Consensus 46 v~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 46 IREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp EEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEET
T ss_pred EEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEEC
Confidence 4455 45433 468888877 6777788889999999999999888 655554444566666666 445899999999
Q ss_pred CCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC-----CCeEEEEecCCCEEEEEeCCC
Q 014104 180 NGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC-----APVTSLSLSEDQLIISGSSLG 254 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-----~~i~~~~~~~~~~l~~~~~dg 254 (430)
++.+.+-...... ....+++++..|+.+..++.|.++|.++.+.+..+.... ..++.+.|..+...+....+.
T Consensus 124 ~Tl~~~~ti~~~~--eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~ 201 (268)
T 3nok_A 124 MPPQRERTTRYSG--EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIWHSS 201 (268)
T ss_dssp TTTEEEEEEECSS--CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEETTCS
T ss_pred CcCcEEEEEeCCC--ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEECCCC
Confidence 9987543222221 234556778888877779999999999998888776321 245677887666555555788
Q ss_pred eEEEEeCCCCceeEEEecC------------CCCCeEEEEEecCCCEEEEEeC
Q 014104 255 SIAISGLSSDQRVATLRST------------DCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
.|.+.|..+++.+..+... ...-...++++|+++.|++.+.
T Consensus 202 ~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 202 DVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred eEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 9999999999998887642 1135688999998766665544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-08 Score=86.67 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=121.7
Q ss_pred CCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCeeeE
Q 014104 151 PNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQ 227 (430)
Q Consensus 151 ~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~ 227 (430)
........|+++++.|+ ...++.|..|+..+....+.... .....+.+...+. ++++. .++.|.+||.. ++...
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~-~~~~gl~~d~dG~-l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDAT-AFTNGNAVDAQQR-LVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESC-SCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCC-CccceeeECCCCC-EEEEECCCCEEEEECCC-CCEEE
Confidence 34456688999999555 45578899999854433333222 2233344444444 44444 45789999985 55332
Q ss_pred EeecC----CCCeEEEEecCC-CEEEE----EeC-------------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 228 IIRMH----CAPVTSLSLSED-QLIIS----GSS-------------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 228 ~~~~~----~~~i~~~~~~~~-~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
..... ...+..++++++ .+.++ |.. .+.|..+|..+++..... . ......++|+|
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~--~~~p~gl~~sp 197 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D--LDHPNGLAFSP 197 (305)
T ss_dssp EECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E--ESSEEEEEECT
T ss_pred EEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c--CCCCcceEEcC
Confidence 22111 124667889876 55554 332 357888888777654333 2 23578899999
Q ss_pred CCCEEEEEeCC------CeEEEEeCCCCceeee---e-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEE
Q 014104 286 CSRLVFAGTTA------GYASCWDLRTMKSLWE---T-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 286 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~---~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 355 (430)
+++.|+.+... +.|.+|++..+. +.. + ....+....+. ++++|++. +++.+ .|.+||. +++.+..
T Consensus 198 dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~-~d~~G~lw-v~~~~-gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 198 DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFC-VDRGGWLW-SSSGT-GVCVFDS-DGQLLGH 272 (305)
T ss_dssp TSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEE-ECTTSCEE-ECCSS-EEEEECT-TSCEEEE
T ss_pred CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEE-ECCCCCEE-EecCC-cEEEECC-CCCEEEE
Confidence 99988877665 689999987543 211 1 11223445677 88999844 44444 4999998 4777777
Q ss_pred EEe
Q 014104 356 CVM 358 (430)
Q Consensus 356 ~~~ 358 (430)
+..
T Consensus 273 ~~~ 275 (305)
T 3dr2_A 273 IPT 275 (305)
T ss_dssp EEC
T ss_pred EEC
Confidence 654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-08 Score=91.75 Aligned_cols=246 Identities=7% Similarity=-0.005 Sum_probs=165.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeec---------------------------------C-------CceeEEEEec--
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSL---------------------------------P-------NAASLVDFDF-- 161 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------------------~-------~~~~~~~~~~-- 161 (430)
-+.||+..|.++|+-+.+++.++.+.. . +......+|.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 477888999999999988888776540 0 1112255665
Q ss_pred ---CCCEEEEE--eCCeEEEEEcCCCcccc--cCCCCceeeeeEE-E-EcCCceEEEe------------------cCCe
Q 014104 162 ---DESKIVGL--IGTRICIWRRNGLRSVF--PSREGTFMKGLCM-R-YFDPEAVVGC------------------EDGT 214 (430)
Q Consensus 162 ---~~~~l~~~--~~~~i~vwd~~~~~~~~--~~~~~~~~~~~~~-~-~~~~~l~~~~------------------~dg~ 214 (430)
||++++.+ .++.|.+.|+++.+... ....+.....+.+ . +++.++++++ .++.
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 88888733 35679999999987432 4444443444444 2 5666676663 3568
Q ss_pred EEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC--------------------------------------e
Q 014104 215 ARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG--------------------------------------S 255 (430)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg--------------------------------------~ 255 (430)
+.++|..+.+.+.++..-. ....++++|+ +++++++.+. .
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999999998888776322 3455667765 6666665332 4
Q ss_pred EEEEeCCC--Cce-eEEEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCc------------eeeeeecCCCc
Q 014104 256 IAISGLSS--DQR-VATLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMK------------SLWETRISPNV 319 (430)
Q Consensus 256 i~vwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~------------~~~~~~~~~~~ 319 (430)
|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ .+.+.... ..
T Consensus 256 V~VID~~~~~~~~~~~~Ipv--g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG-~g 332 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPI--ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG-LG 332 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEE--ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC-SC
T ss_pred EEEEeCcccCCceeEEEEec--CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC-CC
Confidence 78888887 545 556653 33678899999999887655 57889999999653 23344333 44
Q ss_pred eEEEEEeeCCCCeEEEEcCCCeEEEEEcCC----------CceEEEEEeccCcc-----eeeeccCCceE
Q 014104 320 VYSLQHLQNDTSTLVVGGIDGVLRVLDQNT----------GEVLSRCVMDIGSA-----SSSSNKVSGVI 374 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~-----~~~~~s~d~~v 374 (430)
...++ |+|+|...++.-.|+.|.+||+.+ .+.+.++..|.+.- ...+.++||+-
T Consensus 333 P~h~a-F~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 333 PLHTA-FDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDW 401 (595)
T ss_dssp EEEEE-ECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSE
T ss_pred cceEE-ECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCE
Confidence 67787 999995445666899999999987 56788888765532 22344667754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-07 Score=91.86 Aligned_cols=240 Identities=13% Similarity=0.110 Sum_probs=153.7
Q ss_pred EecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-----ee-EEEEec---CCC-EEE-EE------eCCeEEEEEcCC
Q 014104 119 RMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----AS-LVDFDF---DES-KIV-GL------IGTRICIWRRNG 181 (430)
Q Consensus 119 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~-~~~~~~---~~~-~l~-~~------~~~~i~vwd~~~ 181 (430)
.+.++.++.++.|+.|..+|..+|+.+..+..... .. .-.+.. +++ .++ ++ .++.|.-+|.++
T Consensus 114 a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 114 AIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp EEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 34567888899999999999999999887765321 11 111111 233 444 33 268899999998
Q ss_pred CcccccCCCCce------------------------------------------eeeeEEEEcCCceEEEec--------
Q 014104 182 LRSVFPSREGTF------------------------------------------MKGLCMRYFDPEAVVGCE-------- 211 (430)
Q Consensus 182 ~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~l~~~~~-------- 211 (430)
++.++..+.... -...++.+....++.+..
T Consensus 194 G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~ 273 (582)
T 1flg_A 194 GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTW 273 (582)
T ss_dssp CCEEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGG
T ss_pred CCEEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCc
Confidence 886554322100 001122222334555542
Q ss_pred ------------C----CeEEEEECCCCeeeEEeec--CC--------CCeEEEEec--CC---CEEEEEeCCCeEEEEe
Q 014104 212 ------------D----GTARVFDMYSRKCSQIIRM--HC--------APVTSLSLS--ED---QLIISGSSLGSIAISG 260 (430)
Q Consensus 212 ------------d----g~i~vwd~~~~~~~~~~~~--~~--------~~i~~~~~~--~~---~~l~~~~~dg~i~vwd 260 (430)
| +.|..+|..+|+.+..++. |. .++. +... ++ ..++.++.+|.++++|
T Consensus 274 ~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 274 ARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred ccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEE
Confidence 2 6899999999999888753 21 1222 2221 23 3688899999999999
Q ss_pred CCCCceeEEEecCCC------------CC--------------------------------eEEEEEecCCCEEEEEe--
Q 014104 261 LSSDQRVATLRSTDC------------TG--------------------------------IKTLCYNPCSRLVFAGT-- 294 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~------------~~--------------------------------v~~~~~~~~~~~l~~~~-- 294 (430)
..+|+.+..+..... .+ -..++++|+...+++..
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 999999877654210 00 01346666655555432
Q ss_pred -------------------------------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEE
Q 014104 295 -------------------------------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLR 343 (430)
Q Consensus 295 -------------------------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~ 343 (430)
.+|.|..||+.+++.+.+..... .+..-. ....+.+++.++.||.++
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~-~~tagglvf~g~~dg~l~ 510 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGV-LATAGNLVFTGTGDGYFK 510 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCC-EEETTTEEEEECTTSEEE
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccc-eEeCCCEEEEECCCCcEE
Confidence 25789999999999988776543 222211 223467788899999999
Q ss_pred EEEcCCCceEEEEEeccC
Q 014104 344 VLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 344 vwd~~~~~~~~~~~~~~~ 361 (430)
.||.++|+.+.++.....
T Consensus 511 A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 511 AFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp EEETTTCCEEEEEECSSC
T ss_pred EEECCCCCEEEEecCCCC
Confidence 999999999999886443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-07 Score=78.91 Aligned_cols=205 Identities=5% Similarity=-0.046 Sum_probs=138.4
Q ss_pred CeeEEeeecCCc--eeEEEEecCCCEEEEEe---CCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEE-EecCCeE
Q 014104 142 YKCVEEYSLPNA--ASLVDFDFDESKIVGLI---GTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV-GCEDGTA 215 (430)
Q Consensus 142 ~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~---~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~dg~i 215 (430)
.+.+.++..... ..-+.+++++..++++. ++.|.++|+.+++.+.....+.......+...+..++. .-.++.+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence 456777776543 35688998864333543 57999999999885433221221222344555666544 4457899
Q ss_pred EEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCC----CCeEEEEEecCCCEEE
Q 014104 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGIKTLCYNPCSRLVF 291 (430)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~ 291 (430)
.++|..+.+.+..+......-..++. +++.++.+..++.|.++|..+.+.+..+.-... ..+..+.|. +|...+
T Consensus 89 ~viD~~t~~v~~~i~~g~~~g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv 166 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQMKDGWGLAT-DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWA 166 (266)
T ss_dssp EEEETTTTEEEEEEECCSSSCCEEEE-CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECCCCcEEEEEECCCCCeEEEEE-CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEE
Confidence 99999999999888633122234554 344444555688999999999998888774211 136788888 675555
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCC-------------CceEEEEEeeCCCC-eEEEEcCCCeEEEEEcCC
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRISP-------------NVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~~-------------~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~~ 349 (430)
....++.|.+.|..+++.+..+.... ...+.++ ++|+++ .++++...+.|.+.++..
T Consensus 167 n~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa-~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 167 NIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIA-WDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEE-EETTTTEEEEEETTCSEEEEEEEEE
T ss_pred ecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEE-EcCCCCEEEEECCCCCeEEEEEEec
Confidence 55467899999999999888776321 3558898 999986 556666788898888764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.6e-07 Score=77.01 Aligned_cols=147 Identities=12% Similarity=0.005 Sum_probs=110.4
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCC-CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCA-PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN 284 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 284 (430)
+++.+.+|.|+++|+++++.+..+ .... .-..+++..+.+.++...++.+.++|..+.+.+.++... ..-..++
T Consensus 68 y~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~--~eGwGLt-- 142 (268)
T 3nok_A 68 FESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS--GEGWGLC-- 142 (268)
T ss_dssp EEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS--SCCCCEE--
T ss_pred EEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC--CceeEEe--
Confidence 567777889999999999988777 3222 123466666677777778999999999999999999852 2223343
Q ss_pred cCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC-----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 285 PCSRLVFAGTTAGYASCWDLRTMKSLWETRISP-----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 285 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
++++.|+.+..++.|.++|..+.+.+.++.... ..++.+. +. +|+..+..-.++.|.+.|..+|+.+..+...
T Consensus 143 ~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe-~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 143 YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE-CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE-EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECH
T ss_pred cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE-Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECC
Confidence 578888887778999999999998887765422 2456677 54 6765555556889999999999999999863
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.6e-06 Score=84.11 Aligned_cols=305 Identities=10% Similarity=0.047 Sum_probs=181.6
Q ss_pred eeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCC-
Q 014104 115 VDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSRE- 190 (430)
Q Consensus 115 v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~- 190 (430)
|.++.. +++.+..|..++.+..||..+++....... ...+..+....++...+++.++.+..||..+++.......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~ 254 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSP 254 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCT
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCC
Confidence 777776 466666677766688999877655432221 2345556667777777787777799999887653221111
Q ss_pred -----CceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEeec-------CCCCeEEEEecCCCEEEEEeCCCeEE
Q 014104 191 -----GTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIRM-------HCAPVTSLSLSEDQLIISGSSLGSIA 257 (430)
Q Consensus 191 -----~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~l~~~~~dg~i~ 257 (430)
-....+.++..+.. .+..|+.+ -|.+||..+++....... ....|.++...++..+..|+.++-|.
T Consensus 255 ~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~ 333 (795)
T 4a2l_A 255 SNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLN 333 (795)
T ss_dssp TCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEE
T ss_pred CCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeE
Confidence 01123455555533 37778776 588999877764433211 23578999888776788888888899
Q ss_pred EEeCCCCceeEEEec------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee--------cCCCceEEE
Q 014104 258 ISGLSSDQRVATLRS------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR--------ISPNVVYSL 323 (430)
Q Consensus 258 vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--------~~~~~v~~l 323 (430)
.+|..++... .+.. -....|.++..+++|+ |..|+.++-|..||..+++...-.. .....|.++
T Consensus 334 ~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i 411 (795)
T 4a2l_A 334 YYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV 411 (795)
T ss_dssp EECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEE
T ss_pred EeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE
Confidence 9997655432 2221 0234699999988887 4556777669999988765432211 123568888
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe-----ccCcceeeeccCCceEEEeeccc---ccC-CcccccCC--
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM-----DIGSASSSSNKVSGVIERNEGRR---LSA-GCCIDRIP-- 392 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~s~d~~v~~~~~~~---~~~-~~~~~~~~-- 392 (430)
. ..+++..|..|+.++-|..||..+++.. .+.. ....+..+....+|.+.+.+... +.. ...+....
T Consensus 412 ~-~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~ 489 (795)
T 4a2l_A 412 Y-VDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKE 489 (795)
T ss_dssp E-EETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBC
T ss_pred E-EcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEcccc
Confidence 7 7788874666777677999998876543 2221 12233444444555554432211 111 11111111
Q ss_pred ----CCCCCCeeEEEEc--CeEEEEeeCCCeEEEEEecCC
Q 014104 393 ----KTIRPPITCLAVG--MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 393 ----~~h~~~v~~v~~~--~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.-....|.++..| |+..+ |+.+ -|..|+..++
T Consensus 490 ~~~~~~~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~ 527 (795)
T 4a2l_A 490 KDGTPVVSKQITTLFRDSHKRLWI-GGEE-GLSVFKQEGL 527 (795)
T ss_dssp TTCCBCCCCCEEEEEECTTCCEEE-EESS-CEEEEEEETT
T ss_pred ccccccCCceEEEEEECCCCCEEE-EeCC-ceEEEeCCCC
Confidence 1123578888885 44444 4444 4777776543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-07 Score=85.30 Aligned_cols=196 Identities=14% Similarity=0.100 Sum_probs=124.7
Q ss_pred cCCCEEE--EEeCCeEEEEEcCCCc--c-cccCC--------CC-ceeeeeEEEEcCCceEEEecC------CeEEEEEC
Q 014104 161 FDESKIV--GLIGTRICIWRRNGLR--S-VFPSR--------EG-TFMKGLCMRYFDPEAVVGCED------GTARVFDM 220 (430)
Q Consensus 161 ~~~~~l~--~~~~~~i~vwd~~~~~--~-~~~~~--------~~-~~~~~~~~~~~~~~l~~~~~d------g~i~vwd~ 220 (430)
.++++|+ +..++.|.++|+.+.. . +.... .+ .....+.+.+++ .++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 7788887 5557899999987541 1 11111 01 011112333444 44554444 78999999
Q ss_pred CCCeeeEEeecCCC---CeEEEEecCC-CEEEEEe-------------------CCCeEEEEeCCCCceeEEEecCCC-C
Q 014104 221 YSRKCSQIIRMHCA---PVTSLSLSED-QLIISGS-------------------SLGSIAISGLSSDQRVATLRSTDC-T 276 (430)
Q Consensus 221 ~~~~~~~~~~~~~~---~i~~~~~~~~-~~l~~~~-------------------~dg~i~vwd~~~~~~~~~~~~~~~-~ 276 (430)
++++.+..+..... .-..+.|+|+ +.+++.. .+.+|.+||+.+++.+.++..... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999988863222 2345778876 6777663 368999999999988888875211 2
Q ss_pred CeEEEEE--ecCCCEEEEEeC------CCeEEEEeCCCCce--eeee--ec----------------CCCceEEEEEeeC
Q 014104 277 GIKTLCY--NPCSRLVFAGTT------AGYASCWDLRTMKS--LWET--RI----------------SPNVVYSLQHLQN 328 (430)
Q Consensus 277 ~v~~~~~--~~~~~~l~~~~~------dg~i~i~d~~~~~~--~~~~--~~----------------~~~~v~~l~~~s~ 328 (430)
....+.| +|+++++++++. +++|.+|....++. ...+ .. -......+. +|+
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~-lS~ 330 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID-ISL 330 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE-ECT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE-ECC
Confidence 4556666 999999887774 56787765543321 1111 00 013466777 999
Q ss_pred CCCeEEEEc-CCCeEEEEEcCC---CceEEEEEe
Q 014104 329 DTSTLVVGG-IDGVLRVLDQNT---GEVLSRCVM 358 (430)
Q Consensus 329 ~~~~l~s~~-~dg~i~vwd~~~---~~~~~~~~~ 358 (430)
||++|+++. ..+.|.+||+.. .+.+..+..
T Consensus 331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t 364 (462)
T 2ece_A 331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL 364 (462)
T ss_dssp TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC
T ss_pred CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe
Confidence 999997776 468999999863 345555544
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-07 Score=82.84 Aligned_cols=212 Identities=10% Similarity=0.027 Sum_probs=135.6
Q ss_pred eEEEEeCCCeEEEEecCCC----eeEEeee--------cCCceeEEEEecCCCEEE-EEeC------CeEEEEEcCCCcc
Q 014104 124 LILTGVGDKVMRLWSLEGY----KCVEEYS--------LPNAASLVDFDFDESKIV-GLIG------TRICIWRRNGLRS 184 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~----~~~~~~~--------~~~~~~~~~~~~~~~~l~-~~~~------~~i~vwd~~~~~~ 184 (430)
++++|..++.|.|+|+.+. +..++++ +......+.+.|++ .++ +..+ +.+.++|.++.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 6667778899999999765 6667763 11133447888999 555 3333 6899999998875
Q ss_pred cccCCC--C--ceeeeeEEEEcCCceEEEe-------------------cCCeEEEEECCCCeeeEEeecC-C-CCeEEE
Q 014104 185 VFPSRE--G--TFMKGLCMRYFDPEAVVGC-------------------EDGTARVFDMYSRKCSQIIRMH-C-APVTSL 239 (430)
Q Consensus 185 ~~~~~~--~--~~~~~~~~~~~~~~l~~~~-------------------~dg~i~vwd~~~~~~~~~~~~~-~-~~i~~~ 239 (430)
+-.... + .....+.+.+.++.+++.. .+.+|.+||+.+++.+.++..- . .....+
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i 256 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALEL 256 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCcccee
Confidence 432221 1 1112244455666566663 3689999999999888887642 1 234455
Q ss_pred Ee--cCC-CEEEEEe------CCCeEEEEeCCCCce--eEEE--ecC-----C----------CCCeEEEEEecCCCEEE
Q 014104 240 SL--SED-QLIISGS------SLGSIAISGLSSDQR--VATL--RST-----D----------CTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 240 ~~--~~~-~~l~~~~------~dg~i~vwd~~~~~~--~~~~--~~~-----~----------~~~v~~~~~~~~~~~l~ 291 (430)
.| +|+ .++++++ .+++|.+|....++. .+.+ ... . ......+.++|||++|+
T Consensus 257 ~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLY 336 (462)
T 2ece_A 257 RPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLY 336 (462)
T ss_dssp EECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEE
T ss_pred EeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEE
Confidence 55 776 5555554 567887766554432 1111 110 0 23578899999999998
Q ss_pred EEeC-CCeEEEEeCCC---CceeeeeecCC--------------CceEEEEEeeCCCCeEEEEc
Q 014104 292 AGTT-AGYASCWDLRT---MKSLWETRISP--------------NVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 292 ~~~~-dg~i~i~d~~~---~~~~~~~~~~~--------------~~v~~l~~~s~~~~~l~s~~ 337 (430)
++.. .+.|.+||+.. .+.+..+.... +.-..+. ++|||++|+++.
T Consensus 337 VSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~-lSpDGk~LyVaN 399 (462)
T 2ece_A 337 LSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLE-ISRDGRRVYVTN 399 (462)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEE-ECTTSSEEEEEC
T ss_pred EEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEE-EcCCCCEEEEEc
Confidence 7765 67899999863 34444443320 1246777 999999999887
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.6e-06 Score=82.97 Aligned_cols=236 Identities=11% Similarity=0.053 Sum_probs=152.7
Q ss_pred ccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeec--------CCceeEEEEecCCCEEEEEeCCeEEEEEcCCC
Q 014104 112 SVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL--------PNAASLVDFDFDESKIVGLIGTRICIWRRNGL 182 (430)
Q Consensus 112 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 182 (430)
...|.++.. +++.+..|+.++-+.+||..+++....... ...+..+....++...+++.+ .+.+||..++
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~ 292 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTD 292 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTT
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCC
Confidence 345777776 566666677665689999887655432221 133555677778887777765 7899998876
Q ss_pred cccccCC------CCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeec-------CCCCeEEEEecCCCEEE
Q 014104 183 RSVFPSR------EGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRM-------HCAPVTSLSLSEDQLII 248 (430)
Q Consensus 183 ~~~~~~~------~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~i~~~~~~~~~~l~ 248 (430)
....... .-....+.++..+... +..|+.++-|..++..++... .+.. ....|.++...++..+.
T Consensus 293 ~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lW 371 (795)
T 4a2l_A 293 SFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLW 371 (795)
T ss_dssp EEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEE
T ss_pred eEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEE
Confidence 5322111 0111234555555433 888998888999987655432 2211 23468999887666677
Q ss_pred EEeCCCeEEEEeCCCCceeEEEec-------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee----cCC
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRS-------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR----ISP 317 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~----~~~ 317 (430)
.|+.++-|..||..+++...-... -....|.++..+++|+.|..|+.++-|..||..+++...-.. ...
T Consensus 372 iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~ 451 (795)
T 4a2l_A 372 IGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVN 451 (795)
T ss_dssp EEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSC
T ss_pred EEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCC
Confidence 888888899999887654332211 023579999999888856777777779999998765432211 223
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
..|.++. ..++|.+.+.. .+ -|.+||..+++.
T Consensus 452 ~~v~~i~-~d~~g~lwigt-~~-Gl~~~~~~~~~~ 483 (795)
T 4a2l_A 452 ENVYAIL-PDGEGNLWLGT-LS-ALVRFNPEQRSF 483 (795)
T ss_dssp SCEEEEE-ECSSSCEEEEE-SS-CEEEEETTTTEE
T ss_pred CeeEEEE-ECCCCCEEEEe-cC-ceeEEeCCCCeE
Confidence 5788887 77777755544 44 488899876643
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-10 Score=96.96 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=49.0
Q ss_pred CCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 21 ~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
+.++..||.|++++||+||+|+||+++++|||.|+.+++|+.|||.++.+..
T Consensus 2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~ 53 (312)
T 3l2o_B 2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL 53 (312)
T ss_dssp CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence 4578899999999999999999999999999999999999999999999753
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.95 E-value=9.7e-07 Score=74.41 Aligned_cols=190 Identities=13% Similarity=0.053 Sum_probs=127.0
Q ss_pred eeEEeeecCCce--eEEEEecCCCEEE--EEeCC--eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe-cCCeE
Q 014104 143 KCVEEYSLPNAA--SLVDFDFDESKIV--GLIGT--RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC-EDGTA 215 (430)
Q Consensus 143 ~~~~~~~~~~~~--~~~~~~~~~~~l~--~~~~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i 215 (430)
+.+.++.+.... .-+.|+ ++ .|+ ++.+| .|+++|+++++.+.............+...+..+.... .++.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEE
Confidence 566777665444 346676 44 555 44444 89999999998543332222222344555666655544 58899
Q ss_pred EEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCC----CCeEEEEEecCCCEEE
Q 014104 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGIKTLCYNPCSRLVF 291 (430)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~ 291 (430)
.++|..+.+.+.++.... .=..++. +++.++.+..++.|.++|..+.+.+.++..... ..+..+.+. +|+..+
T Consensus 110 ~v~D~~t~~~~~ti~~~~-eG~glt~-dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya 186 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDG-EGWGLTH-NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA 186 (262)
T ss_dssp EEEETTTCCEEEEEECSS-CCCCEEE-CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEEECccCcEEEEEECCC-CceEEec-CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence 999999999999887432 2234554 344555555578899999999999888764211 234567776 676555
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecC------------CCceEEEEEeeCCCCeEEEEcC
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRIS------------PNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~------------~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
..-.+..|.+.|.++++.+..+... .+..++++ ++|+++.|+..+.
T Consensus 187 n~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA-~dp~~~~lfVTGK 244 (262)
T 3nol_A 187 NVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIA-WDKEHHRLFVTGK 244 (262)
T ss_dssp EETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEE-EETTTTEEEEEET
T ss_pred EEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEE-EcCCCCEEEEECC
Confidence 5556889999999999988776542 13568898 9998887766653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.8e-08 Score=86.41 Aligned_cols=221 Identities=9% Similarity=-0.081 Sum_probs=135.5
Q ss_pred ccccceeEEEec-CCeEEEEeC------CCeEEEEecCCCeeEEeeecCC-------ceeEEEEecCCCEEE-EE----e
Q 014104 110 AHSVGVDQCRMK-RGLILTGVG------DKVMRLWSLEGYKCVEEYSLPN-------AASLVDFDFDESKIV-GL----I 170 (430)
Q Consensus 110 ~h~~~v~~~~~~-~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~-~~----~ 170 (430)
+|-..+..++++ ++.|+.... ++.|.+||+.+++.+..+..+. ....+++++++..++ +. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 355678899994 565544432 5799999999999887776531 235688888765554 33 5
Q ss_pred CCeEEEEEcCCCcccccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEE
Q 014104 171 GTRICIWRRNGLRSVFPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLI 247 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l 247 (430)
++.|.+||+.+++..... +.........+...+..+.+.+.+|.+..|. ..+..++++|+ +.+
T Consensus 144 ~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 144 KAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWL 209 (343)
T ss_dssp GCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEE
T ss_pred CCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee--------------cccceeEeccCCCEE
Confidence 688999999877532211 1111000012222333355555666654442 23578999976 577
Q ss_pred EEEeCCC-eEEEEeCC---CCc-----eeE--EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec-
Q 014104 248 ISGSSLG-SIAISGLS---SDQ-----RVA--TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI- 315 (430)
Q Consensus 248 ~~~~~dg-~i~vwd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~- 315 (430)
+.+..++ .+..++.. .+. ... ...+ +......++++++|+++++...++.|.+||..+++.......
T Consensus 210 y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 210 YLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG
T ss_pred EEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC
Confidence 7776555 55555532 111 000 1112 233567799999999999988899999999855654322221
Q ss_pred CCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 316 SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
+.....+++ +.+++.++++.+..+.+.+|+
T Consensus 289 ~~~~p~~va-~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 KLSWTDSFN-FGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp GGSCEEEEE-ECTTSCEEEEECCGGGSGGGB
T ss_pred ceecCCeeE-ECCCCcEEEEeCccccccccc
Confidence 234578888 889988888877655554443
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=1.1e-05 Score=69.66 Aligned_cols=231 Identities=8% Similarity=-0.031 Sum_probs=138.0
Q ss_pred eEEEEeCCCeEEEEecCCCeeE-----EeeecC-CceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcccc-cCCCCcee
Q 014104 124 LILTGVGDKVMRLWSLEGYKCV-----EEYSLP-NAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRSVF-PSREGTFM 194 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~-~~~~~~~~ 194 (430)
+|+.+.. +.|+.++++..... ..+..+ .....++++++++.|+ +. ..+.|.++++++..... ........
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p 81 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence 3444443 47888888764321 112211 2445688998877776 43 36789999998764321 11111223
Q ss_pred eeeEEEEcCCceEE-EecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeC---CCeEEEEeCCCCceeEE
Q 014104 195 KGLCMRYFDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSS---LGSIAISGLSSDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~---dg~i~vwd~~~~~~~~~ 269 (430)
..+++.+.+..++. -...+.|.++++..................++++| +..++.+.. .+.|..+++.. .....
T Consensus 82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~ 160 (267)
T 1npe_A 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRI 160 (267)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEE
T ss_pred cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEE
Confidence 34455544555544 44567899999864332222222224678999997 465555543 46888888763 33333
Q ss_pred EecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 270 LRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+..........++++|++..|+.+ ...+.|.++|.........+.. ......++ .. ++..+++....+.|..+|..
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~-~d-~~~lyva~~~~~~v~~~d~~ 237 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG-LQYPFAVT-SY-GKNLYYTDWKTNSVIAMDLA 237 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC-CCSEEEEE-EE-TTEEEEEETTTTEEEEEETT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC-CCCceEEE-Ee-CCEEEEEECCCCeEEEEeCC
Confidence 332133468899999987766554 4567899999986443333332 23345666 43 34444555567899999999
Q ss_pred CCceEEEEEec
Q 014104 349 TGEVLSRCVMD 359 (430)
Q Consensus 349 ~~~~~~~~~~~ 359 (430)
+++.+.++...
T Consensus 238 ~g~~~~~i~~g 248 (267)
T 1npe_A 238 ISKEMDTFHPH 248 (267)
T ss_dssp TTEEEEEECCS
T ss_pred CCCceEEEccc
Confidence 99998888643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.91 E-value=6e-08 Score=91.31 Aligned_cols=227 Identities=9% Similarity=0.024 Sum_probs=148.4
Q ss_pred CC-eEE-EEeCCCeEEEEecCCCeeEEeeecC--CceeEEEE-e-cCCCEEEEEe-------------------CCeEEE
Q 014104 122 RG-LIL-TGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDF-D-FDESKIVGLI-------------------GTRICI 176 (430)
Q Consensus 122 ~~-~l~-s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~-~-~~~~~l~~~~-------------------~~~i~v 176 (430)
|| +++ +...+..|.+.|+.+.++.+.+..+ .....+++ + |++++++++. ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 44 444 4445678999999999988865543 44556776 4 8999988442 357899
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC--------------------------------------eEEEE
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG--------------------------------------TARVF 218 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--------------------------------------~i~vw 218 (430)
+|.++.+......-+.....+.+.+++..+++.+.+. .|.+.
T Consensus 180 ID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VI 259 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV 259 (595)
T ss_dssp EETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred EECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEE
Confidence 9999877544433211223355555566555555332 47778
Q ss_pred ECCC--Cee-eEEeecCCCCeEEEEecCC-CE-EEEEeCCCeEEEEeCCCCc------------eeEEEecCCCCCeEEE
Q 014104 219 DMYS--RKC-SQIIRMHCAPVTSLSLSED-QL-IISGSSLGSIAISGLSSDQ------------RVATLRSTDCTGIKTL 281 (430)
Q Consensus 219 d~~~--~~~-~~~~~~~~~~i~~~~~~~~-~~-l~~~~~dg~i~vwd~~~~~------------~~~~~~~~~~~~v~~~ 281 (430)
|..+ ++. +..+.. .....++.++|+ ++ ++++..+.+|.++|+.+.+ ....+. .......+
T Consensus 260 D~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~--vG~gP~h~ 336 (595)
T 1fwx_A 260 DGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE--LGLGPLHT 336 (595)
T ss_dssp ECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB--CCSCEEEE
T ss_pred eCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC--CCCCcceE
Confidence 8776 444 445543 234568899986 54 4445578899999998653 333443 44578999
Q ss_pred EEecCCCEEEEEeCCCeEEEEeCCC----------CceeeeeecCCCce-----EEEEEeeCCCCeEEEEcC---CCe--
Q 014104 282 CYNPCSRLVFAGTTAGYASCWDLRT----------MKSLWETRISPNVV-----YSLQHLQNDTSTLVVGGI---DGV-- 341 (430)
Q Consensus 282 ~~~~~~~~l~~~~~dg~i~i~d~~~----------~~~~~~~~~~~~~v-----~~l~~~s~~~~~l~s~~~---dg~-- 341 (430)
+|+|+|....+..-|+.|.+||+.. .+.+..+..|-.+- .++. .+|||++|+++.. |+.
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t-~~~DGk~l~~~Nk~skdr~~~ 415 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGET-LDATNDWLVCLSKFSKDRFLN 415 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTS-TTCCSSEEEEEESCCTTSSCC
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceE-eCCCCCEEEEcCCCCcccccc
Confidence 9999994444566799999999987 45566666654321 2223 6899999998863 432
Q ss_pred --------EEEEEcCCCce
Q 014104 342 --------LRVLDQNTGEV 352 (430)
Q Consensus 342 --------i~vwd~~~~~~ 352 (430)
-.++|+..+++
T Consensus 416 ~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 416 VGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp CCSSCCEEEEEEECSSSSC
T ss_pred CCCCCCCcceEEEcCCCcE
Confidence 28899976553
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.3e-06 Score=69.85 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=125.5
Q ss_pred CeeEEeeecCCceeE--EEEecCCCEEE-EEeC---CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCe
Q 014104 142 YKCVEEYSLPNAASL--VDFDFDESKIV-GLIG---TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGT 214 (430)
Q Consensus 142 ~~~~~~~~~~~~~~~--~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~ 214 (430)
.+.+.++.+...... +.|+ +..|. ++.. ..|+.+|+++++......-........+...+..+. ..-.++.
T Consensus 9 ~~v~~~~phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 9 YRVVKRYPHDTTAFTEGLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEEECCTTCCEEEEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSE
T ss_pred eEEEEEcCCCCccccccEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCE
Confidence 356777766554443 5555 45666 4433 489999999998543332222222234455566644 4456899
Q ss_pred EEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCC----CCeEEEEEecCCCEE
Q 014104 215 ARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDC----TGIKTLCYNPCSRLV 290 (430)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l 290 (430)
+.++|..+.+.+.++.... .=..++.. +..++.+..++.|.++|..+.+.+.++..... ..+..+.+. +|+..
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly 163 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL 163 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence 9999999999999987433 23456553 44444455688999999999999888764211 245667765 66655
Q ss_pred EEEeCCCeEEEEeCCCCceeeeeecC-------------CCceEEEEEeeCCCCeEEEEc
Q 014104 291 FAGTTAGYASCWDLRTMKSLWETRIS-------------PNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 291 ~~~~~dg~i~i~d~~~~~~~~~~~~~-------------~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+..-.+..|.+.|.++++.+..+... .+..++++ ++|+++.|+..+
T Consensus 164 anvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA-~d~~~~~lfVTG 222 (243)
T 3mbr_X 164 ANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIA-FDAEHDRLFVTG 222 (243)
T ss_dssp EEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEE-EETTTTEEEEEE
T ss_pred EEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEE-EcCCCCEEEEEC
Confidence 55446778999999999988776522 13568898 999877665554
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.4e-06 Score=82.06 Aligned_cols=234 Identities=12% Similarity=0.028 Sum_probs=146.7
Q ss_pred cceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeee---------------cCCceeEEEEecCCCEEEEEeCCeEEE
Q 014104 113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS---------------LPNAASLVDFDFDESKIVGLIGTRICI 176 (430)
Q Consensus 113 ~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~~~i~v 176 (430)
..|.++.. ++|.|..|+..+-|.++|..+++...... ....+..+....+|..-+++.++.|..
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~ 337 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINF 337 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEE
Confidence 45777777 56677778876678889987765432211 123455677777888777888899999
Q ss_pred EEcCCCcccccCC--------CCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEEecCC
Q 014104 177 WRRNGLRSVFPSR--------EGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLSLSED 244 (430)
Q Consensus 177 wd~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~~~~~ 244 (430)
++..+........ .-....+.++..+. ..+..|+.++-+..+|..+++..... ......|.++...++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~ 417 (781)
T 3v9f_A 338 ISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSE 417 (781)
T ss_dssp ECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTT
T ss_pred eCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCC
Confidence 9987654221111 11112345666554 34888887777999998655432211 123457888888766
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC-----C
Q 014104 245 QLIISGSSLGSIAISGLSSDQRVATLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS-----P 317 (430)
Q Consensus 245 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-----~ 317 (430)
..+..|+.++-+..+|..+++.. .+.. .....|.++...++|.+ ..|+.. -|..||..+++........ .
T Consensus 418 g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~l-wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~ 494 (781)
T 3v9f_A 418 GNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKI-WIGTHA-GVFVIDLASKKVIHHYDTSNSQLLE 494 (781)
T ss_dssp SCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEE-EEEETT-EEEEEESSSSSCCEEECTTTSSCSC
T ss_pred CCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCE-EEEECC-ceEEEeCCCCeEEecccCccccccc
Confidence 56777887788999998776543 3321 13457999998887764 445554 5999998876543322111 3
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~ 351 (430)
..|.++. ..++|.+.+.....| |..||..+++
T Consensus 495 ~~i~~i~-~d~~g~lWigt~~~G-l~~~~~~~~~ 526 (781)
T 3v9f_A 495 NFVRSIA-QDSEGRFWIGTFGGG-VGIYTPDMQL 526 (781)
T ss_dssp SCEEEEE-ECTTCCEEEEESSSC-EEEECTTCCE
T ss_pred ceeEEEE-EcCCCCEEEEEcCCC-EEEEeCCCCe
Confidence 5788887 888887555443344 7778877553
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=9.9e-06 Score=69.98 Aligned_cols=182 Identities=11% Similarity=0.042 Sum_probs=108.0
Q ss_pred EEEEEeCCeEEEEEcCCCcccc-c-----CCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeE
Q 014104 165 KIVGLIGTRICIWRRNGLRSVF-P-----SREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVT 237 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~ 237 (430)
+|+-+..+.|+.+++++..... . .........+++.+.+..++ +-..++.|..+++........+........
T Consensus 3 ~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~ 82 (267)
T 1npe_A 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE 82 (267)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE
T ss_pred EEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc
Confidence 4443334578888887654210 0 00011122344444444554 444578999999876544333332234678
Q ss_pred EEEecC-CCE-EEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeee
Q 014104 238 SLSLSE-DQL-IISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLWE 312 (430)
Q Consensus 238 ~~~~~~-~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~ 312 (430)
.+++++ ++. +++-...+.|.++|+.... ...+..........++++|++..|+.+.. .+.|..+++.. +....
T Consensus 83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~ 160 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRI 160 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEE
T ss_pred EEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEE
Confidence 999986 444 4444567899999986433 23332212246789999997666655543 36888888763 32222
Q ss_pred ee-cCCCceEEEEEeeCCCCeE-EEEcCCCeEEEEEcCC
Q 014104 313 TR-ISPNVVYSLQHLQNDTSTL-VVGGIDGVLRVLDQNT 349 (430)
Q Consensus 313 ~~-~~~~~v~~l~~~s~~~~~l-~s~~~dg~i~vwd~~~ 349 (430)
+. ........++ +++++..| ++-...+.|.++|...
T Consensus 161 ~~~~~~~~P~gia-~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 161 LAQDNLGLPNGLT-FDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp EECTTCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTE
T ss_pred EEECCCCCCcEEE-EcCCCCEEEEEECCCCEEEEEecCC
Confidence 22 2234567888 99987666 4555668999999874
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.9e-05 Score=77.21 Aligned_cols=308 Identities=9% Similarity=0.021 Sum_probs=172.7
Q ss_pred cceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeee--------cCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc
Q 014104 113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYS--------LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183 (430)
Q Consensus 113 ~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 183 (430)
..|.++.. +++.|..|..++-+..||..+++...... ....+..+....++...+++.+ .+.+||..+++
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~ 241 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTET 241 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTE
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCc
Confidence 45777776 46777778777678899988765432211 0133555666677777777765 79999987765
Q ss_pred ccccCCC------CceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEee--------------cCCCCeEEEEec
Q 014104 184 SVFPSRE------GTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQIIR--------------MHCAPVTSLSLS 242 (430)
Q Consensus 184 ~~~~~~~------~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~--------------~~~~~i~~~~~~ 242 (430)
....... -....+.++..+.. .+..|+..+-|.++|..+++...... .....|.++...
T Consensus 242 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D 321 (781)
T 3v9f_A 242 FTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQD 321 (781)
T ss_dssp EEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEEC
T ss_pred EEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEe
Confidence 3211111 11123455555443 38888876678889987665322111 123578898887
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCceeEEEe--------cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee-
Q 014104 243 EDQLIISGSSLGSIAISGLSSDQRVATLR--------STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET- 313 (430)
Q Consensus 243 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~- 313 (430)
++..+..|+.++-|..++..++....... .-....|.++...++|.+ ..|+.++-|..||..+++...-.
T Consensus 322 ~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~ 400 (781)
T 3v9f_A 322 SFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKE 400 (781)
T ss_dssp SSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC--
T ss_pred CCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccC
Confidence 66678888888889999987654322110 102246999999888774 45665555999998765432211
Q ss_pred --ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe---ccCcceeeeccCCceEEEeeccc---ccC-
Q 014104 314 --RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM---DIGSASSSSNKVSGVIERNEGRR---LSA- 384 (430)
Q Consensus 314 --~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~~s~d~~v~~~~~~~---~~~- 384 (430)
......|.++. ..++|.+. .|+.++-|..+|..+++.. .+.. ....+..+.-..+|.+.+.+... +..
T Consensus 401 ~~~~~~~~v~~i~-~d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~ 477 (781)
T 3v9f_A 401 NRELLSNSVLCSL-KDSEGNLW-FGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLA 477 (781)
T ss_dssp ---CCCSBEEEEE-ECTTSCEE-EEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESS
T ss_pred CCCCCCcceEEEE-ECCCCCEE-EEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCC
Confidence 12336788887 77677644 4666667899998766432 2221 12233344444555554332211 111
Q ss_pred CcccccCCC-----CCCCCeeEEEEc-CeEEEEeeCCCeEEEEEecC
Q 014104 385 GCCIDRIPK-----TIRPPITCLAVG-MKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 385 ~~~~~~~~~-----~h~~~v~~v~~~-~~~l~t~~~Dg~v~vw~~~~ 425 (430)
...+..... .....|.++..| ...|..|+.++-|..|+.++
T Consensus 478 ~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~ 524 (781)
T 3v9f_A 478 SKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM 524 (781)
T ss_dssp SSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC
T ss_pred CCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC
Confidence 111111111 113578888885 33344445433355566543
|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-09 Score=90.21 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=56.2
Q ss_pred CCCccCCcHHHHHHHhcCCChhhhH-HHHhhhHHHHHhcCCchhHHHHHHHhcCCCC----CCCCchHHHHHH
Q 014104 21 RATIESLNGDIICMIFSSLGFFDLV-RCSAVCKSWNAIINRCKLLQLLYCKLHGFSN----TSGSSMRLHLEE 88 (430)
Q Consensus 21 ~~~~~~Lp~e~~~~i~~~l~~~~l~-~~~~v~~~w~~~~~~~~lw~~~~~~~~~~~~----~~~~~~~~~~~~ 88 (430)
...+..||+|++.+||++|++++|. +|++|||+|+.+++++.+|+.+|.+.+..+. +...+|+..+..
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~~~~~~~~Wk~~y~~ 120 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGSADEERDHWQQFYFL 120 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----CCSCHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccccCCCCCChhhhheh
Confidence 4678899999999999999999999 9999999999999999999999998854321 144456655443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-05 Score=71.89 Aligned_cols=235 Identities=10% Similarity=-0.009 Sum_probs=135.4
Q ss_pred eeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc-ccCCC---------C--------ceeeeeEEEEc--CCceEEEecC
Q 014104 154 ASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV-FPSRE---------G--------TFMKGLCMRYF--DPEAVVGCED 212 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~-~~~~~---------~--------~~~~~~~~~~~--~~~l~~~~~d 212 (430)
...++++++++.++ +..++.|..|+..++... +.... + .......+... +..|+++...
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 44466677766344 555677777776654321 11000 0 00112334443 3457777666
Q ss_pred CeEEEEECCCCeeeEEeec-----CCCCeEEEEecC-CCEEEEEeC------------------CCeEEEEeCCCCceeE
Q 014104 213 GTARVFDMYSRKCSQIIRM-----HCAPVTSLSLSE-DQLIISGSS------------------LGSIAISGLSSDQRVA 268 (430)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~-----~~~~i~~~~~~~-~~~l~~~~~------------------dg~i~vwd~~~~~~~~ 268 (430)
+.|..+|..+++. ..+.. .......+++.+ +..++.+.. ++.|..+|..+++...
T Consensus 101 ~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 101 YHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 6688889766543 22211 123467899988 643444332 3679999987776433
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCc--eeeeeecCCCceEEEEEeeCCCCeEEEEcC-------
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMK--SLWETRISPNVVYSLQHLQNDTSTLVVGGI------- 338 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~--~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~------- 338 (430)
.... ......++++|+|+.|+.+ ...+.|.+|++.... ....+....+ ...++ +.++|.+.++...
T Consensus 180 ~~~~--~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~-~d~~G~l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 180 LLKE--LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK-RNADGHFWVSSSEELDGNMH 255 (322)
T ss_dssp EEEE--ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE-ECTTSCEEEEEEEETTSSTT
T ss_pred eccC--CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE-ECCCCCEEEEecCccccccc
Confidence 2221 2245679999999866655 556889999987421 1111111223 67787 8999986666544
Q ss_pred ---CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEEEeeC
Q 014104 339 ---DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVVTTHN 414 (430)
Q Consensus 339 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~t~~~ 414 (430)
.+.|..+|.. ++.+..+....+. .-..++++.+ +++.+++...
T Consensus 256 ~~~~~~v~~~d~~-G~~~~~~~~~~g~--------------------------------~~~~~~~~~~~~g~L~v~~~~ 302 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GNILEVIPLPPPF--------------------------------AGEHFEQIQEHDGLLYIGTLF 302 (322)
T ss_dssp SCEEEEEEEECTT-SCEEEEEECCTTT--------------------------------TTSCCCEEEEETTEEEEECSS
T ss_pred CCCccEEEEECCC-CCEEEEEECCCCC--------------------------------ccccceEEEEeCCEEEEeecC
Confidence 4678888864 7777666543220 0123555555 4666777778
Q ss_pred CCeEEEEEecCC
Q 014104 415 SKYIRLWKFNYS 426 (430)
Q Consensus 415 Dg~v~vw~~~~~ 426 (430)
.+.|.+++++..
T Consensus 303 ~~~i~~~~~~~~ 314 (322)
T 2fp8_A 303 HGSVGILVYDKK 314 (322)
T ss_dssp CSEEEEEEC---
T ss_pred CCceEEEecccc
Confidence 889999988643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00019 Score=65.56 Aligned_cols=240 Identities=10% Similarity=-0.032 Sum_probs=147.7
Q ss_pred eeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcc-cccCCC
Q 014104 115 VDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRS-VFPSRE 190 (430)
Q Consensus 115 v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~-~~~~~~ 190 (430)
-.|.+.. ..+|+.+.. ..|+..++.+.+.............++|++.+..|+ +. ..+.|..+++++... .+....
T Consensus 79 ~~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 79 RSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp SCEEECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred CeECCccccceeEeecC-ccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3455443 335554443 578888988766655555556677799998777766 43 467899999887652 221111
Q ss_pred CceeeeeEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE-EEeCC-CeEEEEeCCCCce
Q 014104 191 GTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII-SGSSL-GSIAISGLSSDQR 266 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~-~~~~d-g~i~vwd~~~~~~ 266 (430)
......+++.+.+..| ++-...+.|.+.++........+.........++++|. ..++ +-... +.|..+++.. ..
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~ 236 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SG 236 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CS
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC-CC
Confidence 1122345555445554 44455678888887644333333333356789999864 4444 43344 7899998764 33
Q ss_pred eEEEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 267 VATLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 267 ~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
...+..........++++|++..|+.+ ...+.|..+|+........+........+++ + .++...++-...+.|..+
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gia-v-~~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT-V-FEDSLYWTDWHTKSINSA 314 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEE-E-ETTEEEEEETTTTEEEEE
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEE-E-ECCEEEEeeCCCCeEEEE
Confidence 333332133467899999877666654 4567899999874332222332334567777 5 345666677778899999
Q ss_pred EcCCCceEEEEEe
Q 014104 346 DQNTGEVLSRCVM 358 (430)
Q Consensus 346 d~~~~~~~~~~~~ 358 (430)
|..+|+.+..+..
T Consensus 315 ~~~~G~~~~~i~~ 327 (386)
T 3v65_B 315 NKFTGKNQEIIRN 327 (386)
T ss_dssp ETTTCCSCEEEEC
T ss_pred ECCCCcceEEEcc
Confidence 9777887777764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.61 E-value=0.00023 Score=63.99 Aligned_cols=242 Identities=10% Similarity=-0.029 Sum_probs=148.2
Q ss_pred cceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCccc-ccC
Q 014104 113 VGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRSV-FPS 188 (430)
Q Consensus 113 ~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~-~~~ 188 (430)
+...|.+. ++.+|+.+. ...|+..++.+......+........++|++.+..|+ +. ..+.|..+++++.... +..
T Consensus 34 d~~~C~~~~~~~~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp TSSCEEESSSCCEEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred CCCcccccccCceeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 44556555 334555443 3458888887766555555556677789998777776 43 4678999998876522 111
Q ss_pred CCCceeeeeEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEE-EEEeCC-CeEEEEeCCCC
Q 014104 189 REGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLI-ISGSSL-GSIAISGLSSD 264 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l-~~~~~d-g~i~vwd~~~~ 264 (430)
........+++.+.+..| ++-...+.|.+.++........+.........++++| +..+ ++-... +.|...++..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG- 191 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG- 191 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-
Confidence 111122335555445554 4445567899999864433333333345678999997 4444 444444 7899988763
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEE
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLR 343 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~ 343 (430)
.....+..........++++|++..|+.+ ...+.|..+|+........+........+++ + .++...++-...+.|.
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gia-v-~~~~ly~td~~~~~V~ 269 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT-V-FEDSLYWTDWHTKSIN 269 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEE-E-ETTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEE-E-ECCEEEEecCCCCeEE
Confidence 33333322133467899999877766654 4567899999874332222323334567777 5 3456666666788999
Q ss_pred EEEcCCCceEEEEEe
Q 014104 344 VLDQNTGEVLSRCVM 358 (430)
Q Consensus 344 vwd~~~~~~~~~~~~ 358 (430)
.+|..+|+.+..+..
T Consensus 270 ~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 270 SANKFTGKNQEIIRN 284 (349)
T ss_dssp EEETTTCCSCEEEEC
T ss_pred EEEccCCCccEEecc
Confidence 999777877777654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.57 E-value=9.6e-05 Score=65.16 Aligned_cols=228 Identities=10% Similarity=0.051 Sum_probs=133.2
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeC---CeEEEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIG---TRICIWR 178 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~i~vwd 178 (430)
.+..+... .....+++ +++ ++++-..++.|..||..+ +....+........+++.++++.+++... ..|..++
T Consensus 24 ~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp EEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred EeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 44555433 45677888 566 444444788999999876 44444555556677999999997665532 2477777
Q ss_pred cCCCccc--ccCCCCceeeeeEEEEcCCceEEE-ecCCeEEEEECCCCee-eEEee---------cCCCCeEEEEecC-C
Q 014104 179 RNGLRSV--FPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKC-SQIIR---------MHCAPVTSLSLSE-D 244 (430)
Q Consensus 179 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~-~~~~~---------~~~~~i~~~~~~~-~ 244 (430)
..+++.. ............+. ..+..++++ ..++.|..+|..+++. +.... ..-.....+ ++ +
T Consensus 102 ~~~g~~~~~~~~~~~~~~~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg 178 (306)
T 2p4o_A 102 KSDGTVETLLTLPDAIFLNGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFG 178 (306)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEET
T ss_pred CCCCeEEEEEeCCCccccCcccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCC
Confidence 7666532 11111222222222 123334444 4588999999876531 21111 111234455 43 3
Q ss_pred C-EEEEEeCCCeEEEEeCCC-Cce--eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--eeeecCCC
Q 014104 245 Q-LIISGSSLGSIAISGLSS-DQR--VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL--WETRISPN 318 (430)
Q Consensus 245 ~-~l~~~~~dg~i~vwd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~ 318 (430)
+ ++++-+..+.|..+|+.. ++. ...+.. ......++++++|++.++....+.|.++|.. ++.. ..+.....
T Consensus 179 ~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 179 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 255 (306)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred CEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC
Confidence 4 445556678999999874 322 122221 1346778999999877776667889999976 5542 23333335
Q ss_pred ceEEEEEee---CCCCeEEEEcCCC
Q 014104 319 VVYSLQHLQ---NDTSTLVVGGIDG 340 (430)
Q Consensus 319 ~v~~l~~~s---~~~~~l~s~~~dg 340 (430)
...+++ |. |+++.|+..+..+
T Consensus 256 ~p~~~a-~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 256 GSTAVA-FGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TEEEEE-ECCSTTTTTEEEEEECTT
T ss_pred CceEEE-EecccCCCCEEEEECCCC
Confidence 678888 87 7877776665443
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=9.1e-05 Score=65.82 Aligned_cols=233 Identities=10% Similarity=0.054 Sum_probs=138.8
Q ss_pred EeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeec---------------------CCceeEEEEec-CC
Q 014104 108 WKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL---------------------PNAASLVDFDF-DE 163 (430)
Q Consensus 108 l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------------~~~~~~~~~~~-~~ 163 (430)
+.+.-....++++ +++ +++++..++.|..||..+++.. .+.. ......+++.+ ++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 4443344567777 455 5888888999999998775433 2221 02345688887 66
Q ss_pred CEEEEEeCCeEEEEEcCCCcc-cccC-CCC---ceeeeeEEEE-cCCceEEEec------------------CCeEEEEE
Q 014104 164 SKIVGLIGTRICIWRRNGLRS-VFPS-REG---TFMKGLCMRY-FDPEAVVGCE------------------DGTARVFD 219 (430)
Q Consensus 164 ~~l~~~~~~~i~vwd~~~~~~-~~~~-~~~---~~~~~~~~~~-~~~~l~~~~~------------------dg~i~vwd 219 (430)
+.+++...+.+..+|.+++.. .+.. ..+ .....+.+.. .+ .++.+.. ++.|..+|
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEe
Confidence 656676667788888876542 1111 111 1112233333 23 3444432 36788888
Q ss_pred CCCCeeeEEeecCCCCeEEEEecCC-CEEEEE-eCCCeEEEEeCCCCc--eeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 220 MYSRKCSQIIRMHCAPVTSLSLSED-QLIISG-SSLGSIAISGLSSDQ--RVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 220 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~-~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
..+++....... ......++++++ +.++.+ +..+.|.++++.... ....+.. ..+ ...++++++|++.++...
T Consensus 172 ~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 172 PSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp TTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecC
Confidence 876654332221 233457899976 545444 567899999987421 1222222 223 788999999987666544
Q ss_pred ----------CCeEEEEeCCCCceeeeeecCC----CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 296 ----------AGYASCWDLRTMKSLWETRISP----NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 296 ----------dg~i~i~d~~~~~~~~~~~~~~----~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+.|..+|.. ++.+..+.... ..+.+++ + .++.+.++....+.|..+++.
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~-~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQ-E-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEE-E-ETTEEEEECSSCSEEEEEEC-
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEE-E-eCCEEEEeecCCCceEEEecc
Confidence 4668888875 77666665432 3456665 4 356655666677889999876
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=0.00048 Score=61.87 Aligned_cols=183 Identities=7% Similarity=-0.051 Sum_probs=106.9
Q ss_pred EEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC
Q 014104 165 KIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~ 243 (430)
.|+.+....|+..++++...............+.+.+....|+ +-...+.|..+++........+.........+++.+
T Consensus 46 ~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~ 125 (349)
T 3v64_C 46 VLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDW 125 (349)
T ss_dssp EEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEET
T ss_pred eeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEec
Confidence 3444455567777776654322222222223344444444444 444678898899876544333332233456778774
Q ss_pred -C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE-eCC-CeEEEEeCCCCceeeeeecCCCc
Q 014104 244 -D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG-TTA-GYASCWDLRTMKSLWETRISPNV 319 (430)
Q Consensus 244 -~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d-g~i~i~d~~~~~~~~~~~~~~~~ 319 (430)
+ .++++-...+.|.+.++..... ..+..........++++|.+..|+.. ... +.|..+++............-..
T Consensus 126 ~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~ 204 (349)
T 3v64_C 126 VHDKLYWTDSGTSRIEVANLDGAHR-KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 204 (349)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSC-EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSC
T ss_pred CCCeEEEEcCCCCeEEEEcCCCCce-EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC
Confidence 3 4555656678999999874433 33332234568999999966655544 344 78999888743222222222345
Q ss_pred eEEEEEeeCCCCeEEEE-cCCCeEEEEEcCC
Q 014104 320 VYSLQHLQNDTSTLVVG-GIDGVLRVLDQNT 349 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~ 349 (430)
...++ ++|++..|+.+ +..+.|..+|+..
T Consensus 205 PnGla-~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 205 PNGLT-IDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEE-EETTTTEEEEEETTTTEEEEEETTS
T ss_pred cceEE-EeCCCCEEEEEECCCCEEEEEeCCC
Confidence 67888 99876656544 4667899999863
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00053 Score=60.63 Aligned_cols=187 Identities=8% Similarity=-0.002 Sum_probs=106.3
Q ss_pred EEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCCeEEEEECCC----CeeeEEeecCCCCeEEEE
Q 014104 166 IVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYS----RKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 166 l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~ 240 (430)
|+-+....|+..|+++...............+.+.+.+..+ ++-..++.|..+++.. ......+.........++
T Consensus 4 ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gla 83 (316)
T 1ijq_A 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 83 (316)
T ss_dssp EEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred EEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEE
Confidence 44455566777777765432211112222233343334444 4445568899998865 222222322223456788
Q ss_pred ecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-C-CeEEEEeCCCCceeeee-ec
Q 014104 241 LSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-A-GYASCWDLRTMKSLWET-RI 315 (430)
Q Consensus 241 ~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~i~d~~~~~~~~~~-~~ 315 (430)
+.+ + ++.++-...+.|.+.|+........+.. .......++++|.+..|+.... . +.|..+++. +.....+ ..
T Consensus 84 vd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~ 161 (316)
T 1ijq_A 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE 161 (316)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS
T ss_pred EeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC
Confidence 874 4 4555556788999999874433322332 3457899999997766655443 2 688888876 3333332 22
Q ss_pred CCCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCCCceEEEE
Q 014104 316 SPNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~ 356 (430)
.-.....++ +++++..|+.+ +..+.|..+|+. |...+.+
T Consensus 162 ~~~~P~gla-~d~~~~~lY~~D~~~~~I~~~d~d-g~~~~~~ 201 (316)
T 1ijq_A 162 NIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVN-GGNRKTI 201 (316)
T ss_dssp SCSCEEEEE-EETTTTEEEEEETTTTEEEEEETT-SCSCEEE
T ss_pred CCCCceEEE-EeccCCEEEEEECCCCeEEEEecC-CCceEEE
Confidence 235677888 99877666554 466789999987 4333333
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00043 Score=63.11 Aligned_cols=184 Identities=7% Similarity=-0.035 Sum_probs=109.1
Q ss_pred CEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEec
Q 014104 164 SKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS 242 (430)
Q Consensus 164 ~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~ 242 (430)
..|+.+....|+.+++.+...............+.+.+....|+ +-...+.|..+++........+.........+++.
T Consensus 88 ~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd 167 (386)
T 3v65_B 88 PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVD 167 (386)
T ss_dssp CEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEE
T ss_pred ceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEE
Confidence 34555556778888887655332222222233344444444444 44567889999987654433333222344567777
Q ss_pred C-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe-CC-CeEEEEeCCCCceeeeeecCCC
Q 014104 243 E-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT-TA-GYASCWDLRTMKSLWETRISPN 318 (430)
Q Consensus 243 ~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~i~d~~~~~~~~~~~~~~~ 318 (430)
+ + .++++-...+.|.+.++........+.. .......++++|.+..|+... .. +.|..+++..............
T Consensus 168 ~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~-~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~ 246 (386)
T 3v65_B 168 WVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLF 246 (386)
T ss_dssp TTTTEEEEEETTTTEEEECBTTSCSCEEEECS-SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred eCCCeEEEEcCCCCeEEEEeCCCCceEEeecC-CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCC
Confidence 4 3 4555556678899999874433333332 335789999999777666544 34 6788888874332222222334
Q ss_pred ceEEEEEeeCCCCeEEE-EcCCCeEEEEEcCC
Q 014104 319 VVYSLQHLQNDTSTLVV-GGIDGVLRVLDQNT 349 (430)
Q Consensus 319 ~v~~l~~~s~~~~~l~s-~~~dg~i~vwd~~~ 349 (430)
....++ ++|++..|+. -+..+.|..+|+..
T Consensus 247 ~PnGla-vd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 247 WPNGLT-IDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp CEEEEE-EEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CeeeEE-EeCCCCEEEEEECCCCEEEEEeCCC
Confidence 567888 9876665544 45667899999863
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-05 Score=78.02 Aligned_cols=228 Identities=10% Similarity=0.032 Sum_probs=122.0
Q ss_pred CC-eEEEEeCCC-----------eEEEEecCCCeeEE--eeecCC--ceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCc
Q 014104 122 RG-LILTGVGDK-----------VMRLWSLEGYKCVE--EYSLPN--AASLVDFDFDESKIV-GL-IGTRICIWRRNGLR 183 (430)
Q Consensus 122 ~~-~l~s~~~dg-----------~i~iwd~~~~~~~~--~~~~~~--~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~ 183 (430)
++ .++.|+.+. .+.+||..+++... ....+. .....++..++..++ ++ .+..+.+||..+.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~ 276 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCc
Confidence 66 666666532 58899988765432 222222 223366778888877 44 45689999998765
Q ss_pred cc--ccCCCCceeeeeEEEE-cCCceEEEe-cC-----CeEEEEECCCCeeeEE-----eecCCCCeEEEEecCCCEEEE
Q 014104 184 SV--FPSREGTFMKGLCMRY-FDPEAVVGC-ED-----GTARVFDMYSRKCSQI-----IRMHCAPVTSLSLSEDQLIIS 249 (430)
Q Consensus 184 ~~--~~~~~~~~~~~~~~~~-~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~-----~~~~~~~i~~~~~~~~~~l~~ 249 (430)
-. ....... ....+... ++..++.|+ .+ ..+.+||..+++-... .......-.++....+..++.
T Consensus 277 W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~ 355 (656)
T 1k3i_A 277 WIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLF 355 (656)
T ss_dssp EEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEE
T ss_pred eeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEE
Confidence 21 1111111 11122222 555577777 34 5699999987653221 000000000011112334444
Q ss_pred EeCC---------CeEEEEeCCCCceeEEEecCC--------CCCeEEEEEec-CCCEEEEEeCCC-----------eEE
Q 014104 250 GSSL---------GSIAISGLSSDQRVATLRSTD--------CTGIKTLCYNP-CSRLVFAGTTAG-----------YAS 300 (430)
Q Consensus 250 ~~~d---------g~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~-~~~~l~~~~~dg-----------~i~ 300 (430)
|+.+ ..+..||..+........... ...-.++.|.. ++++++.|+.++ .|.
T Consensus 356 Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~ 435 (656)
T 1k3i_A 356 GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIIT 435 (656)
T ss_dssp ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEE
T ss_pred ECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEE
Confidence 4433 457888988766443332100 11234455543 677788887542 688
Q ss_pred EEeCCCCceeeee--ecCCCce-EEEEEeeCCCCeEEEEcCC-----------CeEEEEEcCCCc
Q 014104 301 CWDLRTMKSLWET--RISPNVV-YSLQHLQNDTSTLVVGGID-----------GVLRVLDQNTGE 351 (430)
Q Consensus 301 i~d~~~~~~~~~~--~~~~~~v-~~l~~~s~~~~~l~s~~~d-----------g~i~vwd~~~~~ 351 (430)
+||..+.+-.... ..+.... .+++ ..|+++.++.|+.+ ..+.+||..+.+
T Consensus 436 ~yd~~~~~W~~~~~~~mp~~R~~~~~~-~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 436 LGEPGTSPNTVFASNGLYFARTFHTSV-VLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCSTTSCCEEEECTTCCSSCCBSCEEE-ECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE
T ss_pred cCCCCCCCeeEEccCCCCCCcccCCeE-ECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCc
Confidence 8888776543222 1122222 2333 55799999998854 457888887654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00082 Score=59.42 Aligned_cols=223 Identities=13% Similarity=0.067 Sum_probs=138.1
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCC----Cc-ccccCCCCceeeeeEEEEcCC
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNG----LR-SVFPSREGTFMKGLCMRYFDP 204 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~----~~-~~~~~~~~~~~~~~~~~~~~~ 204 (430)
..|+..|+.+.+....+........++++++++.|+ +. ..+.|..+++++ .. .............+++.+.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~ 89 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (316)
T ss_dssp SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCC
Confidence 468888998877666665556677789998777766 43 358899999886 22 111111111223345544455
Q ss_pred ceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEeC-C-CeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 205 EAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGSS-L-GSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 205 ~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~~-d-g~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.|+ +-...+.|.+.|+........+.........++++| +..++.+.. . +.|...++. |.....+....-.....
T Consensus 90 ~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~g 168 (316)
T 1ijq_A 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNG 168 (316)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEE
T ss_pred eEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceE
Confidence 554 445678999999864433333333345678999986 454444433 3 689888875 44444443213346889
Q ss_pred EEEecCCCEEEEEe-CCCeEEEEeCCCCceeeeee-c--CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 281 LCYNPCSRLVFAGT-TAGYASCWDLRTMKSLWETR-I--SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 281 ~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~-~--~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
++++|++..|+.+. ..+.|..+|+... ....+. . ......+++ +. ++...++-...+.|..+|..+|+.+..+
T Consensus 169 la~d~~~~~lY~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~gia-v~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeccCCEEEEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEE-EE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 99998877666554 5678999998743 222222 1 223456777 54 4566666667889999998888877776
Q ss_pred Ee
Q 014104 357 VM 358 (430)
Q Consensus 357 ~~ 358 (430)
..
T Consensus 246 ~~ 247 (316)
T 1ijq_A 246 AE 247 (316)
T ss_dssp EC
T ss_pred ec
Confidence 54
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.40 E-value=0.0012 Score=60.37 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=77.6
Q ss_pred CCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCce
Q 014104 234 APVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKS 309 (430)
Q Consensus 234 ~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~ 309 (430)
.....+++.+ + ++.++-...+.|.+.++........+.. .......++++|.+.+|+.... .+.|...++.....
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~ 237 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 237 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc
Confidence 4567788874 3 4555556778999999875544333332 3446899999997766665542 36798888874332
Q ss_pred eeeeecCCCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCCCceEEEE
Q 014104 310 LWETRISPNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 310 ~~~~~~~~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~ 356 (430)
.......-.....|+ +++++..|+.+ +..+.|..+|+. |.....+
T Consensus 238 ~~~~~~~l~~P~gla-vd~~~~~lY~aD~~~~~I~~~d~d-G~~~~~~ 283 (400)
T 3p5b_L 238 YSLVTENIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVN-GGNRKTI 283 (400)
T ss_dssp EEEECSSCSCEEEEE-EETTTTEEEEEETTTTEEEEEETT-SCCCEEE
T ss_pred EEEEECCCCceEEEE-EEeCCCEEEEEECCCCEEEEEeCC-CCccEEE
Confidence 222233335678898 99877766655 456789999986 4333333
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0014 Score=57.81 Aligned_cols=225 Identities=12% Similarity=0.032 Sum_probs=134.4
Q ss_pred CCeEEEEecCCCe--eEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcc--cccCCCCceeeeeEEEEcCC
Q 014104 131 DKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDP 204 (430)
Q Consensus 131 dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~ 204 (430)
...|+..|+++.. ....+........++|++.+..|+ +. ..+.|..+++++... ......-.....+++.+.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g 91 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 91 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCC
Confidence 3578888887653 222222223455678888766666 43 467899999887632 11111111122344544444
Q ss_pred ce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe--CCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 205 EA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 205 ~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.| ++-...+.|.++++........+.........+++.|. ..++.+. ..+.|...++. |.....+....-.....
T Consensus 92 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Png 170 (318)
T 3sov_A 92 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG 170 (318)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred eEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccE
Confidence 44 44455678999998643322223234456789999864 5555444 35789888876 33333332213346789
Q ss_pred EEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 281 LCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 281 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
++++|++..|+.+ ...+.|..+|+.................+++ +. .+..+.+-...+.|..+|..+|+....+..
T Consensus 171 lavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~gla-v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 171 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT-LF-EDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEE-Ee-CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 9999977666654 4567899999874322222222334566777 54 345556666778999999988887776654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.30 E-value=0.0014 Score=57.53 Aligned_cols=205 Identities=8% Similarity=0.016 Sum_probs=117.3
Q ss_pred CCeeEEeeecCCceeEEEEecCCCEEEEE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe--cCC-eEE
Q 014104 141 GYKCVEEYSLPNAASLVDFDFDESKIVGL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC--EDG-TAR 216 (430)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg-~i~ 216 (430)
..+.+..+........++++++++.+++. .++.|..||.++........ ......+++...+. ++++. .++ .|.
T Consensus 21 ~~~~~~~~p~~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~-~~~p~gia~~~dG~-l~vad~~~~~~~v~ 98 (306)
T 2p4o_A 21 PAKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATV-EGKVSGLAFTSNGD-LVATGWNADSIPVV 98 (306)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEEC-SSEEEEEEECTTSC-EEEEEECTTSCEEE
T ss_pred CceEeEeCCCCCCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeC-CCCceeEEEcCCCc-EEEEeccCCcceEE
Confidence 34555666555566678999988866654 57889999887654322222 22223344444444 44444 222 477
Q ss_pred EEECCCCeeeEEeec-CCCCeEEEEecCCCE-EEEEeCCCeEEEEeCCCCce-eEEEec--------CCCCCeEEEEEec
Q 014104 217 VFDMYSRKCSQIIRM-HCAPVTSLSLSEDQL-IISGSSLGSIAISGLSSDQR-VATLRS--------TDCTGIKTLCYNP 285 (430)
Q Consensus 217 vwd~~~~~~~~~~~~-~~~~i~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~-~~~~~~--------~~~~~v~~~~~~~ 285 (430)
.+|..+++....... .......++..++.. +++-..++.|.++|..+++. +..... ........+ +|
T Consensus 99 ~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 99 SLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 778777765433221 122334455445544 44444688999999876532 211110 011234555 88
Q ss_pred CCCEEEEE-eCCCeEEEEeCCC-Cce--eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 286 CSRLVFAG-TTAGYASCWDLRT-MKS--LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 286 ~~~~l~~~-~~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
+++.|+.+ ...+.|..||+.. ++. ...+.. ......++ ++++|++.++....+.|.++|.. |+.
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~-vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFA-FDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEE-EBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeE-ECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 88766654 4567899999874 321 111111 12345566 88999877776677889999975 655
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.24 E-value=7.4e-05 Score=73.48 Aligned_cols=200 Identities=12% Similarity=0.058 Sum_probs=100.9
Q ss_pred cCCceeEEEEec-CCCEEE-EEeCC-----------eEEEEEcCCCccc--ccCC--CCceeeeeEEEEcCCceEEEec-
Q 014104 150 LPNAASLVDFDF-DESKIV-GLIGT-----------RICIWRRNGLRSV--FPSR--EGTFMKGLCMRYFDPEAVVGCE- 211 (430)
Q Consensus 150 ~~~~~~~~~~~~-~~~~l~-~~~~~-----------~i~vwd~~~~~~~--~~~~--~~~~~~~~~~~~~~~~l~~~~~- 211 (430)
.+......++.+ +++.++ ++.+. .+.+||..+++-. .... ........++...+..+++|+.
T Consensus 184 ~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 184 LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC
Confidence 333344567777 676666 54332 5788998876521 1111 1111111233344555777774
Q ss_pred CCeEEEEECCCCeeeEEeecCCCC-eEEEEec-CCCEEEEEe-CC-----CeEEEEeCCCCceeEEEec----CCCCCeE
Q 014104 212 DGTARVFDMYSRKCSQIIRMHCAP-VTSLSLS-EDQLIISGS-SL-----GSIAISGLSSDQRVATLRS----TDCTGIK 279 (430)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~-i~~~~~~-~~~~l~~~~-~d-----g~i~vwd~~~~~~~~~~~~----~~~~~v~ 279 (430)
+..+.+||..+++-...-..+... -.+++.. .+.+++.|+ .+ ..+.+||..+++-... .. .....-.
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~ 342 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADK 342 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCT
T ss_pred CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCccccccccccc
Confidence 468999998876533221111111 1234444 557888887 34 5799999987664322 10 0000000
Q ss_pred EEEEecCCCEEEEEeCC---------CeEEEEeCCCCceeeeeecCCC---------ceEEEEEee-CCCCeEEEEcCCC
Q 014104 280 TLCYNPCSRLVFAGTTA---------GYASCWDLRTMKSLWETRISPN---------VVYSLQHLQ-NDTSTLVVGGIDG 340 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~---------~v~~l~~~s-~~~~~l~s~~~dg 340 (430)
...+..++..++.|+.+ ..+..||..+.........+.. .-.++. ++ .+++.++.|+.++
T Consensus 343 ~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~-~~~~~~~i~v~GG~~~ 421 (656)
T 1k3i_A 343 QGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM-YDAVKGKILTFGGSPD 421 (656)
T ss_dssp TGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE-EETTTTEEEEECCBSS
T ss_pred cceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe-ccCCCCeEEEEeCCCC
Confidence 01122344544555444 3577888877653322221111 122333 43 3677777777532
Q ss_pred -----------eEEEEEcCCCc
Q 014104 341 -----------VLRVLDQNTGE 351 (430)
Q Consensus 341 -----------~i~vwd~~~~~ 351 (430)
.|.+||..+..
T Consensus 422 ~~~~~~~~~~~~v~~yd~~~~~ 443 (656)
T 1k3i_A 422 YQDSDATTNAHIITLGEPGTSP 443 (656)
T ss_dssp SSSSBCCCCEEEEECCSTTSCC
T ss_pred CCCCCcCCcceEEEcCCCCCCC
Confidence 56677766554
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0014 Score=57.64 Aligned_cols=194 Identities=10% Similarity=0.139 Sum_probs=120.2
Q ss_pred CCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE----cCCc--eEE-Ee-c--CCeEEEEEC--CCCeeeEEe
Q 014104 163 ESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY----FDPE--AVV-GC-E--DGTARVFDM--YSRKCSQII 229 (430)
Q Consensus 163 ~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~~~~--l~~-~~-~--dg~i~vwd~--~~~~~~~~~ 229 (430)
...++ ....+.+.+||+++.. +.....+.. ..+.+.+ .+.. ++. .. . +++|.+|++ .+++ +..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl~G~~-l~~~~~g~~-nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLDGKM-LHSYNTGKL-NNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEETTSCE-EEEECCSCE-EEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred ccEEEEEcCCCCEEEEcCCCcE-EEEccCCCc-ccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 34455 5556788888884433 322222222 1222222 2222 333 33 3 578999966 3443 4444
Q ss_pred ec------CC-CCeEEEEe--cCC--C-EEEEEeCCCeEEEEeCC-------CCceeEEEecCCCCCeEEEEEecCCCEE
Q 014104 230 RM------HC-APVTSLSL--SED--Q-LIISGSSLGSIAISGLS-------SDQRVATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 230 ~~------~~-~~i~~~~~--~~~--~-~l~~~~~dg~i~vwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
.. .. ..+..+++ ++. . ++++...+|.+..|++. +.+.+++|. ..+.+..+.+++....|
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd~~g~L 194 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADDEYGRL 194 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEETTTTEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcCCCCeE
Confidence 21 11 45566666 552 3 67778888999999883 346678887 45689999999988999
Q ss_pred EEEeCCCeEEEEeCC-----CCceeeeee-cCC-CceEEEEEe-eCCCC-eEEEEc-CCCeEEEEEcC-CCceEEEEEec
Q 014104 291 FAGTTAGYASCWDLR-----TMKSLWETR-ISP-NVVYSLQHL-QNDTS-TLVVGG-IDGVLRVLDQN-TGEVLSRCVMD 359 (430)
Q Consensus 291 ~~~~~dg~i~i~d~~-----~~~~~~~~~-~~~-~~v~~l~~~-s~~~~-~l~s~~-~dg~i~vwd~~-~~~~~~~~~~~ 359 (430)
+.+-++.-|..|+.+ +++.+..+. ++- ..+-.|+.+ .++++ +|++++ .++++.+||.. +.+.+..+...
T Consensus 195 yv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~Ig 274 (355)
T 3amr_A 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFRIT 274 (355)
T ss_dssp EEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEEC
T ss_pred EEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEEec
Confidence 999998778788855 244554442 222 367788733 45555 566555 67899999997 67888888754
Q ss_pred cC
Q 014104 360 IG 361 (430)
Q Consensus 360 ~~ 361 (430)
.+
T Consensus 275 ~~ 276 (355)
T 3amr_A 275 DG 276 (355)
T ss_dssp CC
T ss_pred CC
Confidence 44
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0027 Score=56.07 Aligned_cols=180 Identities=8% Similarity=0.018 Sum_probs=105.1
Q ss_pred EEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEE--cCCc-eEEEecCCeEEEEECCCCeee-EEeecCCCCeEEEEe
Q 014104 166 IVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY--FDPE-AVVGCEDGTARVFDMYSRKCS-QIIRMHCAPVTSLSL 241 (430)
Q Consensus 166 l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~-l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~~~~~ 241 (430)
|+-+....|+.+++++................++.+ .+.. +++-...+.|..+++..+... ..+.........+++
T Consensus 7 ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glav 86 (318)
T 3sov_A 7 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 86 (318)
T ss_dssp EEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEE
T ss_pred EEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEE
Confidence 444556778888887753111111111112233333 3344 444455678888888665321 222222234567777
Q ss_pred cC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeeee-ecC
Q 014104 242 SE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT--TAGYASCWDLRTMKSLWET-RIS 316 (430)
Q Consensus 242 ~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~-~~~ 316 (430)
.+ + .++++-...+.|.++++... ....+..........++++|.+..|+... ..+.|..+++.. .....+ ...
T Consensus 87 d~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~ 164 (318)
T 3sov_A 87 DWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSE 164 (318)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSS
T ss_pred EcCCCeEEEEECCCCEEEEEECCCC-cEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECC
Confidence 74 3 45555566789999998643 33333322445789999999766666555 357888888763 322222 222
Q ss_pred CCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcC
Q 014104 317 PNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQN 348 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~ 348 (430)
-.....++ +++++..|+.+ +..+.|..+|+.
T Consensus 165 l~~Pngla-vd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 165 IYWPNGLT-LDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp CSCEEEEE-EETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCccEEE-EeccCCEEEEEECCCCEEEEEcCC
Confidence 34567888 99876666544 466889999986
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00083 Score=59.16 Aligned_cols=137 Identities=8% Similarity=0.171 Sum_probs=94.1
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCC--------EEEEEe-C--CCeEEEEeC--CCCceeEEEec
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQ--------LIISGS-S--LGSIAISGL--SSDQRVATLRS 272 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~--------~l~~~~-~--dg~i~vwd~--~~~~~~~~~~~ 272 (430)
++.....+-+.+||+ +|+.++.+.. +.++.+..-|+- ++++.. . +++|.+|++ .++. +..+..
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~ 118 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD 118 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence 566667789999999 8998888863 667777766531 333333 3 579999966 3443 444421
Q ss_pred ---C--CC-CCeEEEEE--ecC-CC-EEEEEeCCCeEEEEeCC-------CCceeeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 273 ---T--DC-TGIKTLCY--NPC-SR-LVFAGTTAGYASCWDLR-------TMKSLWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 273 ---~--~~-~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~-------~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
. .. ..+..+++ +|. +. ++++...+|.+..|++. +.+.+.++... +.+-.++ ..+....|+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg-sq~Egcv-vDd~~g~Lyv 196 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN-SQTEGMA-ADDEYGRLYI 196 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS-SCEEEEE-EETTTTEEEE
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC-CCcceEE-EcCCCCeEEE
Confidence 0 11 46777888 674 43 68888899999999883 34566777654 4566776 8888889999
Q ss_pred EcCCCeEEEEEcC
Q 014104 336 GGIDGVLRVLDQN 348 (430)
Q Consensus 336 ~~~dg~i~vwd~~ 348 (430)
+-++.-|..++.+
T Consensus 197 ~eEd~GIw~~da~ 209 (355)
T 3amr_A 197 AEEDEAIWKFSAE 209 (355)
T ss_dssp EETTTEEEEEECS
T ss_pred ecccceEEEEeCC
Confidence 9988766666654
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0075 Score=60.06 Aligned_cols=231 Identities=12% Similarity=0.066 Sum_probs=138.3
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCc-----ccccCCCCceeee
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLR-----SVFPSREGTFMKG 196 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~-----~~~~~~~~~~~~~ 196 (430)
+|+.+ ....|+..++...+....+........+++++....|+ +. ..+.|+.+++++.. .............
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 475 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcce
Confidence 44433 33567777887665555555556677788988777666 43 35778888887631 1122112222334
Q ss_pred eEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-C-CCeEEEEeCCCCceeEEEec
Q 014104 197 LCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-S-LGSIAISGLSSDQRVATLRS 272 (430)
Q Consensus 197 ~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~ 272 (430)
+++.+.+..| ++-...+.|.+.++........+.........|+++|. ..|+.+. . .+.|.+.++.. .....+..
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG-~~~~~lv~ 554 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVT 554 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEEC
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCC-CceEEEEe
Confidence 5666556554 45556789999998654433333334456789999874 5555443 2 37899999864 44444433
Q ss_pred CCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCceeeeeec--CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 273 TDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKSLWETRI--SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 273 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
........|++++.+..|+.+. ....|..+++........+.. ......+|+ +. .+.+.++-...+.|...|..+
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~gla-v~-~~~lYwtD~~~~~I~~~dk~t 632 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLT 632 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTT
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEE-Ee-CCEEEEEECCCCEEEEEeCCC
Confidence 2345789999998777666554 456899999874333222222 123345666 42 334455555778899999888
Q ss_pred CceEEEEEe
Q 014104 350 GEVLSRCVM 358 (430)
Q Consensus 350 ~~~~~~~~~ 358 (430)
|+.+..+..
T Consensus 633 G~~~~~l~~ 641 (791)
T 3m0c_C 633 GSDVNLLAE 641 (791)
T ss_dssp CCCCEEEEC
T ss_pred CcceEEeec
Confidence 877766643
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0032 Score=58.21 Aligned_cols=248 Identities=8% Similarity=-0.064 Sum_probs=129.6
Q ss_pred eeEEEEecC--CCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC-----eEEEEECCCCee
Q 014104 154 ASLVDFDFD--ESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG-----TARVFDMYSRKC 225 (430)
Q Consensus 154 ~~~~~~~~~--~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 225 (430)
...++++++ +..|+ +...+.|+.+|.+++..............+++...+. |+++...+ .+...+...+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~ 219 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFT 219 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCee
Confidence 446888884 34444 5444889999997766433222223234455555555 55544321 233333221111
Q ss_pred -eEEeecCCCCeEEEEecC-CC-EEEEEeCCCeEEEEeCCCCceeEEE-ecCCCCCeEEEEEecCCCEEEEE-eCCCeEE
Q 014104 226 -SQIIRMHCAPVTSLSLSE-DQ-LIISGSSLGSIAISGLSSDQRVATL-RSTDCTGIKTLCYNPCSRLVFAG-TTAGYAS 300 (430)
Q Consensus 226 -~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~ 300 (430)
...+. .......++++| +. +.++-..++.|+.+|..++.....+ ..........++|+|+|+.|+.+ ...+.|+
T Consensus 220 ~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 220 ERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp CEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred cccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 01121 223445678887 54 4445456789999999877763333 22122234579999999955544 4567899
Q ss_pred EEeCC--CCce--eeeeecC---------------CCceEEEEEe---------eCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 301 CWDLR--TMKS--LWETRIS---------------PNVVYSLQHL---------QNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 301 i~d~~--~~~~--~~~~~~~---------------~~~v~~l~~~---------s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.++.. ++.. ...+.+. -.....++ + .++|.+.++-...+.|+.++. +| .
T Consensus 299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~gia-v~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-~ 375 (433)
T 4hw6_A 299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGI-FVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-R 375 (433)
T ss_dssp EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEE-EEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-E
T ss_pred EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEE-EEccccccccCCCCcEEEEECCCCEEEEECC-CC-C
Confidence 98765 2321 1112111 12345566 6 566666666666778888874 45 3
Q ss_pred EEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEc---CeEEEEeeCCCeEEEEEec
Q 014104 353 LSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVG---MKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 353 ~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~ 424 (430)
+.++.+... ....|..||.. .. ...-..-..|+++ +..+++=...+.|+..+++
T Consensus 376 v~t~~G~g~--~~~~G~~dG~~--------~~--------~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGN--SREWGYVDGEL--------RS--------QALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCT--TCSSCCBCEET--------TT--------TCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCC--CCccccCCCcc--------cc--------ccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 344433211 00011112210 00 0001234667775 5666666667788888764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0028 Score=53.59 Aligned_cols=197 Identities=9% Similarity=0.056 Sum_probs=126.5
Q ss_pred EEEeccccceeEEEec-C-C-eEEEEeCCCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCEEEEE-eCCeEEEEEc
Q 014104 106 DQWKAHSVGVDQCRMK-R-G-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIVGL-IGTRICIWRR 179 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~~-~-~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~-~~~~i~vwd~ 179 (430)
+.+.|-.+.+..+++. + + ++++...++.|...|.. ++.+..+... .....+++..++.++++. .++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3566777789999994 3 4 55557778899999988 8888887643 456668888888765643 4678888887
Q ss_pred CCCcc-----cc-----cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECC---CCeeeEEee-------cCCCCeEEE
Q 014104 180 NGLRS-----VF-----PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMY---SRKCSQIIR-------MHCAPVTSL 239 (430)
Q Consensus 180 ~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~---~~~~~~~~~-------~~~~~i~~~ 239 (430)
..... .. ..........+++.+.+..|+++.......+|.+. ....+..+. .+...+.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l 178 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA 178 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence 64331 01 11122234567777777677777766555555543 111222221 123456889
Q ss_pred EecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCC--------CCCeEEEEEecCCCEEEEEeCCCeEEEEeCC
Q 014104 240 SLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTD--------CTGIKTLCYNPCSRLVFAGTTAGYASCWDLR 305 (430)
Q Consensus 240 ~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~ 305 (430)
+++|. .+++....+..+..+|.. ++.+..+.-.. -.....|+|+++|++.++ ++...++.|.-.
T Consensus 179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~~ 252 (255)
T 3qqz_A 179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC-
T ss_pred EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEec
Confidence 99975 577777788899999965 66665554311 137789999999985444 677777777543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0036 Score=57.88 Aligned_cols=228 Identities=8% Similarity=-0.017 Sum_probs=127.4
Q ss_pred eEEEec--C-CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC----C-eEEEEEcCCCcc--
Q 014104 116 DQCRMK--R-GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG----T-RICIWRRNGLRS-- 184 (430)
Q Consensus 116 ~~~~~~--~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~----~-~i~vwd~~~~~~-- 184 (430)
..++++ + +.|+.+...+.|+.+|+.+++.............++++++++.|+ +... . .+..++.++...
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~ 219 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVI 219 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeee
Confidence 466674 2 466666666889999998876555444445577799999999666 4331 1 344455433221
Q ss_pred -cccCCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEecCC-C-EEEEEeCCCeEEEE
Q 014104 185 -VFPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLSED-Q-LIISGSSLGSIAIS 259 (430)
Q Consensus 185 -~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~~~-~-~l~~~~~dg~i~vw 259 (430)
.+. .......+++.+.+..|+ +-..++.|..++..++........ .......++++|+ + ++++-...+.|..+
T Consensus 220 ~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~ 297 (430)
T 3tc9_A 220 TELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS 297 (430)
T ss_dssp EEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred eeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence 111 111122344444233444 444678899999876654222221 1234678999976 6 45555677889998
Q ss_pred eCCC--Cce--eEEEecC--C------------CCCeE-EEEEe--------cCCCEEEEEeCCCeEEEEeCCCCceeee
Q 014104 260 GLSS--DQR--VATLRST--D------------CTGIK-TLCYN--------PCSRLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 260 d~~~--~~~--~~~~~~~--~------------~~~v~-~~~~~--------~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
+... +.. ...+.+. . -.... .++.. ++|.+.++-...+.|+.++. +++.. .
T Consensus 298 ~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~-~ 375 (430)
T 3tc9_A 298 DYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVT-T 375 (430)
T ss_dssp EEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEE-E
T ss_pred eCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEE-E
Confidence 7653 222 2222221 0 01233 45553 34555556556678888884 35432 2
Q ss_pred eecC------------------CCceEEEEEeeC-CCCeEEEEcCCCeEEEEEcC
Q 014104 313 TRIS------------------PNVVYSLQHLQN-DTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 313 ~~~~------------------~~~v~~l~~~s~-~~~~l~s~~~dg~i~vwd~~ 348 (430)
+.+. -.....++ ++| ++.++++-...+.|+.++++
T Consensus 376 ~~g~g~~~~~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 376 FAGRGSNGTSGYNDGDLRQEARFNHPEGIV-YDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEECCTTSSSSCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEeCCCCCCCcccCCCchhhcEeCCCcEEE-EECCCCEEEEEECCCCeEEEEccC
Confidence 2211 12467777 887 45555555566777777654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0012 Score=65.97 Aligned_cols=232 Identities=9% Similarity=0.033 Sum_probs=125.7
Q ss_pred ceeEEEec--CC-eEEEE-eCCC----eEEEEecCCC-eeEEe-eecCCceeEEEEecCCCEEE-EEeC-----CeEEEE
Q 014104 114 GVDQCRMK--RG-LILTG-VGDK----VMRLWSLEGY-KCVEE-YSLPNAASLVDFDFDESKIV-GLIG-----TRICIW 177 (430)
Q Consensus 114 ~v~~~~~~--~~-~l~s~-~~dg----~i~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~-----~~i~vw 177 (430)
.+....++ || +|+-+ +.+| +|+++|+.++ +.+.. +. .....+.|+||++.|+ ...+ ..|.++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~--~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~ 252 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS--GTNGEIVWGPDHTSLFYVTKDETLRENKVWRH 252 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE--EECSCCEECSSTTEEEEEEECTTCCEEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc--CceeeEEEecCCCEEEEEEECCCCCCCEEEEE
Confidence 45666776 56 55533 3333 5999999998 63321 11 1233578999999888 5554 368888
Q ss_pred EcCCCcc----cccCCCCceeeeeEEEEcCCceEEEe---cCCeEEEEECCCC--ee--eEEeecCCCCeEEEEecCCCE
Q 014104 178 RRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGC---EDGTARVFDMYSR--KC--SQIIRMHCAPVTSLSLSEDQL 246 (430)
Q Consensus 178 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~~--~~--~~~~~~~~~~i~~~~~~~~~~ 246 (430)
++.++.. ++............+++++..|+..+ ....|.++|+.++ +. ........+...++.|+.++.
T Consensus 253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH 332 (751)
T ss_dssp ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE
T ss_pred ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE
Confidence 8877642 22222223333456677777765544 2356888999775 23 222333455667777666654
Q ss_pred EE-EEeCC----CeEEEEeCCCC-ceeE-EEecCCCC--CeEEEEEecCCCE-EEEEeCCCe--EEEEeC-------CCC
Q 014104 247 II-SGSSL----GSIAISGLSSD-QRVA-TLRSTDCT--GIKTLCYNPCSRL-VFAGTTAGY--ASCWDL-------RTM 307 (430)
Q Consensus 247 l~-~~~~d----g~i~vwd~~~~-~~~~-~~~~~~~~--~v~~~~~~~~~~~-l~~~~~dg~--i~i~d~-------~~~ 307 (430)
|+ ....+ ..|..+|+.++ +... .+. +.. .+..+.+ .++. +++...++. |.++|+ ..+
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~--~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g 408 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD--HSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMADSQDGVFKAG 408 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEEC--CCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEEC--CCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence 44 43333 36778887653 2222 233 222 3445554 4444 456666775 555665 333
Q ss_pred ceeeeeecCC-CceEEEEEe----eCCCC-eEEEEcCC---CeEEEEEcCCCce
Q 014104 308 KSLWETRISP-NVVYSLQHL----QNDTS-TLVVGGID---GVLRVLDQNTGEV 352 (430)
Q Consensus 308 ~~~~~~~~~~-~~v~~l~~~----s~~~~-~l~s~~~d---g~i~vwd~~~~~~ 352 (430)
+....+.... ..+..+. . ++++. ++++.+.. ..+..+|+.+++.
T Consensus 409 ~~~~~l~l~~~~~~~~~~-~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 409 TGLREVVMEEPIFTVHLV-ESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TCCEECCCCCSSCEEEEC-GGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred ccceEECCCCceeEEEec-cCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 3133332111 2233332 2 34555 44444332 5688888887763
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.007 Score=55.92 Aligned_cols=150 Identities=7% Similarity=0.036 Sum_probs=88.3
Q ss_pred eeEEEEec-CCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCeee
Q 014104 154 ASLVDFDF-DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKCS 226 (430)
Q Consensus 154 ~~~~~~~~-~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~ 226 (430)
...++++| ++..|+ +...+.|+.+|++++..............+++...+..|+++... ..+.+.+. .+...
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~ 217 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFK 217 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSC
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCcee
Confidence 45688887 355555 544588999999886533222233333445555556645555441 13444443 33221
Q ss_pred --EEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCeEEE
Q 014104 227 --QIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYASC 301 (430)
Q Consensus 227 --~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i 301 (430)
..+.. ......++++| + .++++-..++.|..+|...+................++|+|+|++|+ +-...+.|..
T Consensus 218 ~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~ 296 (430)
T 3tc9_A 218 VITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR 296 (430)
T ss_dssp SEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred eeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence 22221 23456788887 5 45555556789999998876543333221224578999999999555 4456778999
Q ss_pred EeCC
Q 014104 302 WDLR 305 (430)
Q Consensus 302 ~d~~ 305 (430)
++..
T Consensus 297 ~~~d 300 (430)
T 3tc9_A 297 SDYD 300 (430)
T ss_dssp EEEE
T ss_pred EeCC
Confidence 8765
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0016 Score=64.93 Aligned_cols=191 Identities=9% Similarity=-0.024 Sum_probs=107.5
Q ss_pred eeEEEEe-cCCCEEE-EEe-CC----eEEEEEcCCC-cccccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEEC
Q 014104 154 ASLVDFD-FDESKIV-GLI-GT----RICIWRRNGL-RSVFPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDM 220 (430)
Q Consensus 154 ~~~~~~~-~~~~~l~-~~~-~~----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~ 220 (430)
....+|+ |||+.|+ +.. +| .|+++|++++ +.+.. ..........|++++..|+....+ ..|.++++
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-cccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 4558999 9999988 333 22 4999999998 63211 111122346677777776666654 36888898
Q ss_pred CCCee--eEEee-cCCCCeEEEEecCC-CEEEEEe---CCCeEEEEeCCCCc-ee--EEEecCCCCCeEEEEEecCCCEE
Q 014104 221 YSRKC--SQIIR-MHCAPVTSLSLSED-QLIISGS---SLGSIAISGLSSDQ-RV--ATLRSTDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 221 ~~~~~--~~~~~-~~~~~i~~~~~~~~-~~l~~~~---~dg~i~vwd~~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~l 290 (430)
.+++. ...+. ........+.|+|+ ++|+..+ ....|.++|+.++. .. ..+..........+.|+..+.++
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~ 334 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLV 334 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEE
T ss_pred CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEE
Confidence 87642 23333 22345677889976 5555544 24478889998753 22 34433234455556555433444
Q ss_pred EEEeCC----CeEEEEeCCCCceeee-eecCCC--ceEEEEEeeCCCCeEEEEcCCCe--EEEEEc
Q 014104 291 FAGTTA----GYASCWDLRTMKSLWE-TRISPN--VVYSLQHLQNDTSTLVVGGIDGV--LRVLDQ 347 (430)
Q Consensus 291 ~~~~~d----g~i~i~d~~~~~~~~~-~~~~~~--~v~~l~~~s~~~~~l~s~~~dg~--i~vwd~ 347 (430)
+....+ ..|..+|+.++..... +..+.. .+..+. +. .+.++++...++. |.++|+
T Consensus 335 ~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~-~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 335 ILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIA-VR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEE-EC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEE-EE-CCEEEEEEEeCCEEEEEEEec
Confidence 444443 3677788765322222 333332 344444 32 2344556666775 555665
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0065 Score=56.18 Aligned_cols=229 Identities=7% Similarity=-0.064 Sum_probs=129.6
Q ss_pred eeEEEec-C---CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCC-----eEEEEEcCCCcc-
Q 014104 115 VDQCRMK-R---GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGT-----RICIWRRNGLRS- 184 (430)
Q Consensus 115 v~~~~~~-~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~i~vwd~~~~~~- 184 (430)
...+++. + +.|+.+...+.|+.+|..+++.............++++++++.+++...+ .+...+......
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~ 220 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTE 220 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCC
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeec
Confidence 4567774 2 56666655589999999887766555444567789999999944454422 233333322211
Q ss_pred --cccCCCCceeeeeEEEEcCCceEEE-ecCCeEEEEECCCCeeeEEe-ec-CCCCeEEEEecCC-C-EEEEEeCCCeEE
Q 014104 185 --VFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKCSQII-RM-HCAPVTSLSLSED-Q-LIISGSSLGSIA 257 (430)
Q Consensus 185 --~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~-~~-~~~~i~~~~~~~~-~-~l~~~~~dg~i~ 257 (430)
... .......+++.+....|+.+ ..++.|+.+|..++.....+ .. ....-..++++|+ + ++++-...+.|.
T Consensus 221 ~~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~ 298 (433)
T 4hw6_A 221 RLSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIY 298 (433)
T ss_dssp EEEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEE
T ss_pred ccccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEE
Confidence 111 11111224444423345544 45678999998777652222 21 1223346999976 5 455555678999
Q ss_pred EEeCC--CCce--eEEEecC--------------CCCCeEEEEE---------ecCCCEEEEEeCCCeEEEEeCCCCcee
Q 014104 258 ISGLS--SDQR--VATLRST--------------DCTGIKTLCY---------NPCSRLVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 258 vwd~~--~~~~--~~~~~~~--------------~~~~v~~~~~---------~~~~~~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
.++.. ++.. ...+.+. .-.....+++ .++|++.++-...+.|+.++. ++...
T Consensus 299 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 299 RVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE
T ss_pred EEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEE
Confidence 98865 3321 1222221 0124677999 677777777667788999985 45332
Q ss_pred eeeecC------------------CCceEEEEEee-CCCCeEEEEcCCCeEEEEEcC
Q 014104 311 WETRIS------------------PNVVYSLQHLQ-NDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 311 ~~~~~~------------------~~~v~~l~~~s-~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+.+. -.....++ ++ ++|.++++-...+.|+.++++
T Consensus 378 -t~~G~g~~~~~G~~dG~~~~~~~~~~P~gia-vd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 378 -TYAGRGNSREWGYVDGELRSQALFNHPTSIA-YDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -EEECCCTTCSSCCBCEETTTTCBCSSEEEEE-EETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -EEEeCCCCCccccCCCccccccEeCCCcEEE-EECCCCEEEEEeCCCCEEEEEecC
Confidence 22211 12355676 76 555555555566677776653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.016 Score=57.79 Aligned_cols=189 Identities=8% Similarity=-0.036 Sum_probs=109.5
Q ss_pred EEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCce-EEEecCCeEEEEECCCC----eeeEEeecCCCCeEEE
Q 014104 165 KIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA-VVGCEDGTARVFDMYSR----KCSQIIRMHCAPVTSL 239 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~i~vwd~~~~----~~~~~~~~~~~~i~~~ 239 (430)
+|+.+....|+..++.................+.+......| ++-...+.|+.+++... .....+.........|
T Consensus 397 ~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 397 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp EEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred ccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 444566677888887765432222222222233333333444 44455677888887642 2222333233455677
Q ss_pred EecC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeeeeec
Q 014104 240 SLSE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 240 ~~~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~ 315 (430)
++.+ + +++++-...+.|.+.++.... ...+..........|+++|.+.+|+.... .+.|...++........+..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~ 555 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 555 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC
Confidence 8774 3 566666678899999987443 44443324456899999998666665543 36799998874333322333
Q ss_pred CCCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCCCceEEEE
Q 014104 316 SPNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 316 ~~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~ 356 (430)
.-.....|+ +++.+..|+.+ ...+.|...++. |.....+
T Consensus 556 ~l~~P~GLa-vD~~~~~LYwaD~~~~~I~~~d~d-G~~~~~v 595 (791)
T 3m0c_C 556 NIQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVN-GGNRKTI 595 (791)
T ss_dssp SCSCEEEEE-EETTTTEEEEEETTTTEEEEEETT-SCSCEEE
T ss_pred CCCCceEEE-EecCCCeEEEEeCCCCcEEEEecC-CCceEEE
Confidence 335678888 88776666555 456789999986 4433333
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0084 Score=53.16 Aligned_cols=266 Identities=13% Similarity=0.043 Sum_probs=132.6
Q ss_pred cccceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeec-----CCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcc
Q 014104 111 HSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSL-----PNAASLVDFDFDESKIVGLIGTRICIWRRNGLRS 184 (430)
Q Consensus 111 h~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 184 (430)
-...+.++.+. ++.++.++.+|.|. ...+.++.-..... ......+.+.+ +..++++..+.|.. ..+.++.
T Consensus 34 ~~~~~~~v~~~~~~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp CSSCEEEEEESSSSCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSS
T ss_pred CCCcEEEEEECCCCcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEECCCeEEE-ECCCCCC
Confidence 34578899984 44333356677653 33344432222211 11334466654 33444556664443 3443432
Q ss_pred ---cccC--CCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEe-ecCCCCeEEEEecCC-CEEEEEeCCCeE
Q 014104 185 ---VFPS--REGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLSED-QLIISGSSLGSI 256 (430)
Q Consensus 185 ---~~~~--~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~~~~-~~l~~~~~dg~i 256 (430)
+... ..+.. ..+.. .+..++.++.+|.|..- ...|+.-... ......+..+.+.++ .+++.+ .+|.+
T Consensus 111 W~~~~~~~~~~~~~---~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~G~~ 185 (327)
T 2xbg_A 111 WSQIPLDPKLPGSP---RLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SRGSF 185 (327)
T ss_dssp CEECCCCTTCSSCE---EEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TTSSE
T ss_pred ceECccccCCCCCe---EEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CCCcE
Confidence 1111 11222 22332 23345555556654332 1234332222 234567889999866 555544 44544
Q ss_pred -EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec----CCCceEEEEEeeCCCC
Q 014104 257 -AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI----SPNVVYSLQHLQNDTS 331 (430)
Q Consensus 257 -~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~v~~l~~~s~~~~ 331 (430)
+-+|- .++.-..+.......+..+.+.++++.++ ++.+|.+++.+...++.-..+.. +...+..+. +.+++.
T Consensus 186 ~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~-~~~~~~ 262 (327)
T 2xbg_A 186 YSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLA-YRTPNE 262 (327)
T ss_dssp EEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEE-ESSSSC
T ss_pred EEEeCC-CCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCcccCCcceEEEE-ecCCCE
Confidence 44442 12322223322455789999999887654 45678777764332333222221 223578887 777777
Q ss_pred eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeEEE
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKKVV 410 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~l~ 410 (430)
.++++. +|.| ++..+.|+.-..+... ..+...+.++.+ ++..++
T Consensus 263 ~~~~g~-~g~i-~~S~DgG~tW~~~~~~---------------------------------~~~~~~~~~v~~~~~~~~~ 307 (327)
T 2xbg_A 263 VWLAGG-AGAL-LCSQDGGQTWQQDVDV---------------------------------KKVPSNFYKILFFSPDQGF 307 (327)
T ss_dssp EEEEES-TTCE-EEESSTTSSCEECGGG---------------------------------TTSSSCCCEEEEEETTEEE
T ss_pred EEEEeC-CCeE-EEeCCCCcccEEcCcc---------------------------------CCCCCCeEEEEEECCCceE
Confidence 666554 6655 3334434322222110 011235667777 456677
Q ss_pred EeeCCCeEEEEE
Q 014104 411 TTHNSKYIRLWK 422 (430)
Q Consensus 411 t~~~Dg~v~vw~ 422 (430)
.++.+|.|.-++
T Consensus 308 ~~G~~G~i~~~~ 319 (327)
T 2xbg_A 308 ILGQKGILLRYV 319 (327)
T ss_dssp EECSTTEEEEEC
T ss_pred EEcCCceEEEEc
Confidence 778899776554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00014 Score=71.66 Aligned_cols=225 Identities=13% Similarity=0.088 Sum_probs=129.3
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-E-EeCCeEEEEEcCC----Ccc-cccCCCCceeeeeEEEEcC
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG----LRS-VFPSREGTFMKGLCMRYFD 203 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~----~~~-~~~~~~~~~~~~~~~~~~~ 203 (430)
.+.|+..++.+.+....+........++|++.+..|+ + ...+.|..+++.+ ... ............+++.+.+
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~ 464 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 464 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSS
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeC
Confidence 3578888888766655555555666789998877776 3 3457899999876 221 1111111112234444344
Q ss_pred CceEE-EecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-C-CCeEEEEeCCCCceeEEEecCCCCCeE
Q 014104 204 PEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-S-LGSIAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 204 ~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
..|+. -...+.|.++++........+.........++++|. ..|+.+. . .+.|.++++.. .....+.........
T Consensus 465 g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 465 SNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQWPN 543 (699)
T ss_dssp SBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSSCSSCC
T ss_pred CcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCCCCCcc
Confidence 44444 345678999998654433333322344577888863 4444333 2 26788888753 333333221233567
Q ss_pred EEEEecCCCEEE-EEeCCCeEEEEeCCCCceeeeee--cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 280 TLCYNPCSRLVF-AGTTAGYASCWDLRTMKSLWETR--ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 280 ~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~--~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
.|+|+|++..|+ +-...+.|..+|+........+. .......+|+ +..+ .++++....+.|..+|..+|+.+..+
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~gla-vd~~-~lywtd~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-VFED-KVFWTDIINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCE-EETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeE-EECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence 899998765554 54566789999987432222121 1112334555 4333 44455556789999998888887776
Q ss_pred Ee
Q 014104 357 VM 358 (430)
Q Consensus 357 ~~ 358 (430)
..
T Consensus 622 ~~ 623 (699)
T 1n7d_A 622 AE 623 (699)
T ss_dssp CT
T ss_pred ec
Confidence 54
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.90 E-value=0.033 Score=58.01 Aligned_cols=177 Identities=11% Similarity=0.076 Sum_probs=90.8
Q ss_pred ccceeEEEec---C-----CeEEEEeC-CCeEEEEecCCCeeEEeeecCC--ceeEEEEec-CC-CEEE-EEeCCeEEEE
Q 014104 112 SVGVDQCRMK---R-----GLILTGVG-DKVMRLWSLEGYKCVEEYSLPN--AASLVDFDF-DE-SKIV-GLIGTRICIW 177 (430)
Q Consensus 112 ~~~v~~~~~~---~-----~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~-~~-~~l~-~~~~~~i~vw 177 (430)
.+.|.|+++. + .+++.|.. |++|+|+++.+.+.+.....+. .+..+.+.. .+ .+|. +-.||.+..+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 4578999883 1 38888986 9999999999877765554432 333333332 22 2344 7788888766
Q ss_pred EcC--CCcccc---cCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCe-EEEEecC-C--CEE
Q 014104 178 RRN--GLRSVF---PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPV-TSLSLSE-D--QLI 247 (430)
Q Consensus 178 d~~--~~~~~~---~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i-~~~~~~~-~--~~l 247 (430)
.++ ++...- ............+...+.. +++.+ +....++--+ ++.. ...-....+ ....|+. . +-+
T Consensus 633 ~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~-~~l~-~s~l~~~~v~~~~~F~se~~~~g~ 709 (1158)
T 3ei3_A 633 GLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACS-DRPTVIYSSN-HKLV-FSNVNLKEVNYMCPLNSDGYPDSL 709 (1158)
T ss_dssp EECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEES-SSCEEEEESS-SSEE-EEEBSSSCCCEEEEECCSSSTTEE
T ss_pred EEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEEC-CCCEEEEEcC-CceE-EeccChHHhceEeccCcccCCCcE
Confidence 654 332110 0011111122222222222 33333 4444444432 3221 111112233 2334442 1 334
Q ss_pred EEEeCCCeEEEEeCCCCc--eeEEEecCCCCCeEEEEEecCCCEEEEEe
Q 014104 248 ISGSSLGSIAISGLSSDQ--RVATLRSTDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 248 ~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
+..+ ++.+++.-+.+.+ .++++. ....+..++++|..+.++.+.
T Consensus 710 v~~~-~~~LrI~~i~~~~~~~~~~ip--L~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 710 ALAN-NSTLTIGTIDEIQKLHIRTVP--LYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp EEEC-SSCEEEEEECCSSSEEEEEEE--CSSEEEEEEEEGGGTEEEEEE
T ss_pred EEEc-CCceEEEEecccCCeeEEEEe--CCCCceEEEEcCCCCEEEEEE
Confidence 4333 4558888775432 344454 456789999999887665543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.011 Score=49.96 Aligned_cols=193 Identities=8% Similarity=-0.022 Sum_probs=110.4
Q ss_pred CceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccC--CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee--
Q 014104 152 NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPS--REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC-- 225 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-- 225 (430)
.....++++|+++.|+ ...++.|...|.+ ++.+-.. ........+++...+..+++.-.++.+.++++.....
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVK 105 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeee
Confidence 3466699999887766 4456778888887 4322111 1112223334433333244444567888888765432
Q ss_pred -eEEee------cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCC---CCceeEEEec------CCCCCeEEEEEecCCC
Q 014104 226 -SQIIR------MHCAPVTSLSLSED-QLIISGSSLGSIAISGLS---SDQRVATLRS------TDCTGIKTLCYNPCSR 288 (430)
Q Consensus 226 -~~~~~------~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~---~~~~~~~~~~------~~~~~v~~~~~~~~~~ 288 (430)
+.... ..+.....++++|. +.|+++.......+|.+. ....+..+.. .+...+.+++++|...
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg 185 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN 185 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence 22221 12345689999975 566666554444444432 1112222211 1233678999998654
Q ss_pred -EEEEEeCCCeEEEEeCCCCceeeeeecCC---------CceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 289 -LVFAGTTAGYASCWDLRTMKSLWETRISP---------NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 289 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
+++....+..+..+|.. ++.+..+.... ..--.++ +.++|+ |+..++.+.++.+.-.
T Consensus 186 ~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia-~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 186 TLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVA-MDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEE-ECTTCC-EEEEETTTEEEEEEC-
T ss_pred eEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeE-ECCCCC-EEEEcCCceEEEEEec
Confidence 55566667888999976 55555443321 2456888 999997 4445677777777644
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0076 Score=52.62 Aligned_cols=215 Identities=9% Similarity=-0.011 Sum_probs=108.7
Q ss_pred CeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeC-----CeEEEEEcCCCc---cc-ccCCCCceeeeeEEE
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIG-----TRICIWRRNGLR---SV-FPSREGTFMKGLCMR 200 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~-----~~i~vwd~~~~~---~~-~~~~~~~~~~~~~~~ 200 (430)
..+.+||+.+.+....-..+.. ....+...++..++ ++.+ ..+.+||+.+.+ -. ............+..
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~ 110 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT 110 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE
Confidence 3688899887654432222211 11223334555555 5443 468899988765 21 111111111122222
Q ss_pred EcCCceEEEecC-----CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeE
Q 014104 201 YFDPEAVVGCED-----GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSL-----GSIAISGLSSDQRVA 268 (430)
Q Consensus 201 ~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~ 268 (430)
..+..++.|+.+ ..+.+||+.+.+-.. .+...... .++....+.+++.|+.+ ..+.+||+.+.+-..
T Consensus 111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 333335566543 468899988765322 22211111 12233355677777654 468899998765433
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCC--
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGID-- 339 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~d-- 339 (430)
.-.......-.++.. -+++.++.|+.+ ..+.+||+.+.+-.. .+....... ++. ..+++.++.|+.+
T Consensus 190 ~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~--~~~~~i~v~GG~~~~ 265 (301)
T 2vpj_A 190 VTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYV-GAT--VLRGRLYAIAGYDGN 265 (301)
T ss_dssp ECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEE--EETTEEEEECCBCSS
T ss_pred CCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccce-eEE--EECCEEEEEcCcCCC
Confidence 211111111112222 266777777664 468999998764322 121111111 222 2366777777755
Q ss_pred ---CeEEEEEcCCCc
Q 014104 340 ---GVLRVLDQNTGE 351 (430)
Q Consensus 340 ---g~i~vwd~~~~~ 351 (430)
..+.+||+.+.+
T Consensus 266 ~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 266 SLLSSIECYDPIIDS 280 (301)
T ss_dssp SBEEEEEEEETTTTE
T ss_pred cccccEEEEcCCCCe
Confidence 467888987654
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.035 Score=53.88 Aligned_cols=229 Identities=11% Similarity=0.062 Sum_probs=140.2
Q ss_pred CeEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCcc-cccCCCCceeeee
Q 014104 123 GLILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRS-VFPSREGTFMKGL 197 (430)
Q Consensus 123 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~-~~~~~~~~~~~~~ 197 (430)
.+|+.+ ....|+..|+++......+.. -.....++|++.+..|+ +. .++.|..+++++... ............+
T Consensus 7 ~~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 7 AFLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGM 85 (628)
T ss_dssp CEEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEE
T ss_pred cEEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceE
Confidence 344443 456889999987554333332 24566789999877777 43 468899999886542 1111111223345
Q ss_pred EEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe--CCCeEEEEeCCCCceeEEEecC
Q 014104 198 CMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRST 273 (430)
Q Consensus 198 ~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~ 273 (430)
++.+.+..| ++-...+.|.+.++........+...-.....++++|. ..|+.+. ..+.|...++.... ...+..
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~- 163 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP- 163 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC-
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC-
Confidence 555555554 44455688999998644322222233456789999974 5555544 35688888876433 333332
Q ss_pred CCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 274 DCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
.......++++++++.|+.+ ...+.|..+|+..... ..+........+++ +.. +...++-...+.|...|..+|+.
T Consensus 164 ~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~gla-v~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 164 NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLT-QYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEE-EET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEE-EEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 34578999999987766655 4567899999875433 33333334556777 543 45555555678999999877765
Q ss_pred EEEEE
Q 014104 353 LSRCV 357 (430)
Q Consensus 353 ~~~~~ 357 (430)
...+.
T Consensus 241 ~~~l~ 245 (628)
T 4a0p_A 241 RTIIQ 245 (628)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 54443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00085 Score=59.28 Aligned_cols=187 Identities=9% Similarity=0.064 Sum_probs=108.3
Q ss_pred CCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEe-----cCCCEEEE--EeCCeEEEEEcCCCcccccCCCCcee
Q 014104 122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFD-----FDESKIVG--LIGTRICIWRRNGLRSVFPSREGTFM 194 (430)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~~~~i~vwd~~~~~~~~~~~~~~~~ 194 (430)
++.++.++.||.|.-.|..+|+....++.......+... .++..+++ ..||.+..++.+++...+........
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv 89 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence 348999999999999999999999988765111122211 12233444 57899999998877533221111100
Q ss_pred ee--eEEE-----------EcCCceEEEecCCeEEEEECCCCeeeEEeecCC--CC-----eEEEE---e---cCCCEEE
Q 014104 195 KG--LCMR-----------YFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC--AP-----VTSLS---L---SEDQLII 248 (430)
Q Consensus 195 ~~--~~~~-----------~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--~~-----i~~~~---~---~~~~~l~ 248 (430)
.. +... ..+..+++|+.+|.+...|+.+|+.+..+.... +. ..|.. + ..+..++
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ 169 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV 169 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence 00 1100 034448899999999999999999999886321 10 11111 1 1135677
Q ss_pred EEeCCCeEEEEeCCCCceeEEEec----CCCCC--eE-EEEEecCCCEEEEEeCCCeEEEEeCCCCceee
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRS----TDCTG--IK-TLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
.+..+..+.+.+ ++|+ +..+.- ..... +. .-..+.++.+ +.++.||.|.-+|..+|+.+.
T Consensus 170 ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 170 IGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred EecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 777777777766 4554 222210 00000 00 0001124555 557899999999999998876
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=97.74 E-value=9.3e-06 Score=72.78 Aligned_cols=49 Identities=33% Similarity=0.548 Sum_probs=42.6
Q ss_pred CCCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHH
Q 014104 19 KPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLL 67 (430)
Q Consensus 19 ~~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~ 67 (430)
.+...+..||+|++.+||+||+..++.++++|||+|+.++.++.+|+.+
T Consensus 4 ~~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l 52 (336)
T 2ast_B 4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL 52 (336)
T ss_dssp ---CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred cccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence 3566789999999999999999999999999999999999888888644
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0096 Score=51.95 Aligned_cols=174 Identities=13% Similarity=0.052 Sum_probs=85.6
Q ss_pred eEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCe---eeE--EeecCCCCeEEEEe
Q 014104 173 RICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRK---CSQ--IIRMHCAPVTSLSL 241 (430)
Q Consensus 173 ~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~---~~~--~~~~~~~~i~~~~~ 241 (430)
.+.+||+.+.+-. ............+....+..++.|+.+ ..+.+||+.+.+ -.. .+......- ++..
T Consensus 32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~-~~~~ 110 (301)
T 2vpj_A 32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLA-GATT 110 (301)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSC-EEEE
T ss_pred EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccce-eEEE
Confidence 4666776665411 111111111112223333336666654 468899988765 221 111111112 2223
Q ss_pred cCCCEEEEEeCC-----CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee
Q 014104 242 SEDQLIISGSSL-----GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW 311 (430)
Q Consensus 242 ~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~ 311 (430)
..+.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. .+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 355666777643 368899988766433222111111122222 267777777654 458899988754322
Q ss_pred --eeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCc
Q 014104 312 --ETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGE 351 (430)
Q Consensus 312 --~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~ 351 (430)
.+....... +++ ..+++.++.|+.+ ..+.+||+.+.+
T Consensus 190 ~~~~p~~r~~~-~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 233 (301)
T 2vpj_A 190 VTPMATKRSGA-GVA--LLNDHIYVVGGFDGTAHLSSVEAYNIRTDS 233 (301)
T ss_dssp ECCCSSCCBSC-EEE--EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCcccccc-eEE--EECCEEEEEeCCCCCcccceEEEEeCCCCc
Confidence 111111111 222 2256777777654 467888887654
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.019 Score=50.11 Aligned_cols=150 Identities=11% Similarity=0.006 Sum_probs=99.6
Q ss_pred EEEEcCCceEEEe-cCCeEEEEECCCCeeeEE-eec----CCC--CeEEEEe---cCCC-EEEEEe-------------C
Q 014104 198 CMRYFDPEAVVGC-EDGTARVFDMYSRKCSQI-IRM----HCA--PVTSLSL---SEDQ-LIISGS-------------S 252 (430)
Q Consensus 198 ~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~-~~~----~~~--~i~~~~~---~~~~-~l~~~~-------------~ 252 (430)
.|......+..++ ..++|..||...+..... +.+ ... .+..+.+ .|+. ++++.. .
T Consensus 19 ~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g 98 (334)
T 2p9w_A 19 IYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHG 98 (334)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSS
T ss_pred cCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCC
Confidence 3333334455555 689999999875543333 221 111 3578999 4554 444333 2
Q ss_pred CCeEEEEeCC---CCceeEEEecC------------CCCCeEEEEEecCCCEEEEEeCC-CeEEEEeCCCCceeeeee--
Q 014104 253 LGSIAISGLS---SDQRVATLRST------------DCTGIKTLCYNPCSRLVFAGTTA-GYASCWDLRTMKSLWETR-- 314 (430)
Q Consensus 253 dg~i~vwd~~---~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~-- 314 (430)
+..|..+|+. +++.+....-. .......++..++|+..++++.. +.|...+.... .+..+.
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeec
Confidence 6789999999 88877665421 11247899999999999988888 88888877633 222221
Q ss_pred ----cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 315 ----ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 315 ----~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
......+.++ ++|+|..|++....|.|..+|+.+
T Consensus 178 ~~~~~~~~G~nGIv-~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 178 SGNGGQRPGYSGIT-FDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CCCSSSCCSCSEEE-EETTTTEEEEESSSSSEEEEECSS
T ss_pred CCCcccccCcceEE-EeCCCCEEEEEcCCCeEEEEcCCC
Confidence 1112366888 999999888887799999999874
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.039 Score=53.57 Aligned_cols=184 Identities=8% Similarity=-0.051 Sum_probs=111.4
Q ss_pred EEEEEeCCeEEEEEcCCCcccccCCCC--ceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEe
Q 014104 165 KIVGLIGTRICIWRRNGLRSVFPSREG--TFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241 (430)
Q Consensus 165 ~l~~~~~~~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 241 (430)
+|+-+....|+..++++.......... .....+.+.+....++ +-..++.|..+++........+.........+++
T Consensus 8 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 8 FLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp EEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred EEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 455567888999999876432211111 1222344444444444 4456788998888654333333322234567777
Q ss_pred cC--CCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeeeeecCC
Q 014104 242 SE--DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT--TAGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 242 ~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
.+ +++.++-...+.|.+.++.... ...+..........++++|....|+... ..+.|...++.... ...+...-
T Consensus 88 D~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~ 165 (628)
T 4a0p_A 88 DWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVPNV 165 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSTT-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSC
T ss_pred EeCCCEEEEEECCCCEEEEEecCCCc-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEECCC
Confidence 63 3555666677899999986443 3333322445789999999666666554 25678888876433 33332334
Q ss_pred CceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCCCc
Q 014104 318 NVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNTGE 351 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~~~ 351 (430)
.....++ ++++++.|+.+ ...+.|...|+....
T Consensus 166 ~~P~Gla-lD~~~~~LY~aD~~~~~I~~~d~dG~~ 199 (628)
T 4a0p_A 166 GRANGLT-IDYAKRRLYWTDLDTNLIESSNMLGLN 199 (628)
T ss_dssp SSEEEEE-EETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCcceEE-EccccCEEEEEECCCCEEEEEcCCCCc
Confidence 5678888 99877666555 466789999987443
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00019 Score=70.78 Aligned_cols=179 Identities=8% Similarity=-0.001 Sum_probs=98.8
Q ss_pred EEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEE-ecCCeEEEEECCC----CeeeEEeecCCCCeEEEEe
Q 014104 167 VGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYS----RKCSQIIRMHCAPVTSLSL 241 (430)
Q Consensus 167 ~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~----~~~~~~~~~~~~~i~~~~~ 241 (430)
+.+..+.|+..++++...............+.+.+....|+.+ ...+.|+.+++.+ ......+.........+++
T Consensus 381 l~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 381 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp CCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEEC
T ss_pred EecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEE
Confidence 3444567888888776533222222222334555444555444 3457888888764 2222222111123456777
Q ss_pred cC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeeee-ecC
Q 014104 242 SE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSLWET-RIS 316 (430)
Q Consensus 242 ~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~-~~~ 316 (430)
.+ + .++++-...+.|.++++.... ...+..........++++|.+.+|+.... .+.|..+++... ....+ ...
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~-~~~~l~~~~ 538 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTEN 538 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC-CCCEESCSS
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC-CeeEEEeCC
Confidence 63 3 455555667899999987544 33333212345788899997665554432 267888877632 22222 122
Q ss_pred CCceEEEEEeeCCCCeE-EEEcCCCeEEEEEcC
Q 014104 317 PNVVYSLQHLQNDTSTL-VVGGIDGVLRVLDQN 348 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l-~s~~~dg~i~vwd~~ 348 (430)
-.....|+ ++|++..| ++-+..+.|..+|+.
T Consensus 539 l~~PnGla-vd~~~~~LY~aD~~~~~I~~~d~d 570 (699)
T 1n7d_A 539 IQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVN 570 (699)
T ss_dssp CSSCCCEE-ECTTTCCEEEEETTTTEEEEECSS
T ss_pred CCCccEEE-EeccCCEEEEEecCCCeEEEEccC
Confidence 24456787 88876555 444566789999986
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=0.025 Score=51.06 Aligned_cols=219 Identities=14% Similarity=0.185 Sum_probs=142.8
Q ss_pred CCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---ccccCCCCc-eeeeeEEEEcCCc
Q 014104 130 GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SVFPSREGT-FMKGLCMRYFDPE 205 (430)
Q Consensus 130 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~~~~~~~~-~~~~~~~~~~~~~ 205 (430)
...++.|+|+++.+.++.+..++.+....|-. .+.|+--.+..|+.|++++.. .++..+..- ...++....+...
T Consensus 84 ag~~lQiFnle~K~klks~~~~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~ 162 (494)
T 1bpo_A 84 AGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQ 162 (494)
T ss_dssp ETTEEEEEETTTTEEEEEEECSSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTS
T ss_pred cCCeEEEEchHHhhhhcceecCCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCC
Confidence 37899999999999999999888877777754 445666678899999997633 233332211 1233333333332
Q ss_pred ---eEEEe------cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC----CEEEEEeCC---CeEEEEeCCCC---ce
Q 014104 206 ---AVVGC------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED----QLIISGSSL---GSIAISGLSSD---QR 266 (430)
Q Consensus 206 ---l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~l~~~~~d---g~i~vwd~~~~---~~ 266 (430)
+++|- -.|.+.+|..+. +.-+.+++|.+....+....+ .++..+... +.+.+-++... ..
T Consensus 163 kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~ 241 (494)
T 1bpo_A 163 KWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ 241 (494)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC
T ss_pred CeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC
Confidence 33332 247889999854 455678888776666666421 344444432 78899888543 11
Q ss_pred -----eEEEec---CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 267 -----VATLRS---TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 267 -----~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
...+.- ...+-..++..++.-..++.-+.-|.|++||+.++.++..-+-....|...+ ......=++....
T Consensus 242 ~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~-~~~~~~Gi~~Vnr 320 (494)
T 1bpo_A 242 PFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA-PHEATAGIIGVNR 320 (494)
T ss_dssp CCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-EETTTTEEEEEET
T ss_pred CccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEec-ccCCCCcEEEEcc
Confidence 111110 1123456788888888888999999999999999999988777777777665 4444444555557
Q ss_pred CCeEEEEEcCCCc
Q 014104 339 DGVLRVLDQNTGE 351 (430)
Q Consensus 339 dg~i~vwd~~~~~ 351 (430)
.|.|.--.++...
T Consensus 321 ~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 321 KGQVLSVCVEEEN 333 (494)
T ss_dssp TCEEEEEEECTTT
T ss_pred CceEEEEEEcccc
Confidence 7777766666443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.011 Score=51.61 Aligned_cols=223 Identities=9% Similarity=0.046 Sum_probs=109.7
Q ss_pred eEEEEeCC----CeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeC-----CeEEEEEcCCCccc-ccCCCC
Q 014104 124 LILTGVGD----KVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIG-----TRICIWRRNGLRSV-FPSREG 191 (430)
Q Consensus 124 ~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~-----~~i~vwd~~~~~~~-~~~~~~ 191 (430)
.++.|+.+ ..+.+||+.+.+....-..+.. ........++..++ ++.+ ..+.+||..+.+-. ......
T Consensus 18 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 97 (302)
T 2xn4_A 18 MVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRD 97 (302)
T ss_dssp EEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred EEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCc
Confidence 44455543 3678889887654332222211 11122233555544 4433 45888998876521 111111
Q ss_pred ceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeCC-------CeEE
Q 014104 192 TFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSSL-------GSIA 257 (430)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d-------g~i~ 257 (430)
......+....+..++.|+.+ ..+.+||+.+.+-... +...... .+++...+.+++.|+.+ ..+.
T Consensus 98 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~ 176 (302)
T 2xn4_A 98 RRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSS-VGVGVVGGLLYAVGGYDVASRQCLSTVE 176 (302)
T ss_dssp CCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEETTTTEECCCEE
T ss_pred cccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccC-ceEEEECCEEEEEeCCCCCCCccccEEE
Confidence 111112223344446666654 3578899877653221 2111111 22333355666666542 4588
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee--eeecCCCceEEEEEeeCCC
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~ 330 (430)
+||+.+.+-...-.......-.+++.. ++++++.|+.+ ..+.+||+.+.+-.. .+...... .+++ ..++
T Consensus 177 ~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~-~~~~--~~~~ 252 (302)
T 2xn4_A 177 CYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRN-AGVC--AVNG 252 (302)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE--EETT
T ss_pred EEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCcccc-CeEE--EECC
Confidence 999987654332111111111222222 66777777654 368999998754322 11111111 1122 2366
Q ss_pred CeEEEEcCCC-----eEEEEEcCCCc
Q 014104 331 STLVVGGIDG-----VLRVLDQNTGE 351 (430)
Q Consensus 331 ~~l~s~~~dg-----~i~vwd~~~~~ 351 (430)
+.++.|+.++ .+.+||+.+.+
T Consensus 253 ~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 253 LLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEEEECCcCCCcccccEEEEcCCCCe
Confidence 7777777553 47888887654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.01 Score=51.91 Aligned_cols=141 Identities=10% Similarity=0.044 Sum_probs=71.7
Q ss_pred eEEEecC----CeEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeCC------CeEEEEeCCCCceeEEEecC
Q 014104 206 AVVGCED----GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSSL------GSIAISGLSSDQRVATLRST 273 (430)
Q Consensus 206 l~~~~~d----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~ 273 (430)
++.|+.+ ..+.+||+.+++-... +......- +++...+.+++.|+.+ ..+.+||..+.+-...-...
T Consensus 59 yv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p 137 (306)
T 3ii7_A 59 YILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL-AACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML 137 (306)
T ss_dssp EEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC-EEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS
T ss_pred EEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce-eEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc
Confidence 5555543 6788999887753222 21111112 2223355677777655 46899999877643321111
Q ss_pred CCCCeEEEEEecCCCEEEEEeC---------CCeEEEEeCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCC---
Q 014104 274 DCTGIKTLCYNPCSRLVFAGTT---------AGYASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGID--- 339 (430)
Q Consensus 274 ~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~d--- 339 (430)
....-.+++. -++++++.|+. -..+.+||+.+.+-.. .+...... .+++ . -+++.++.|+.+
T Consensus 138 ~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~-~~~~i~v~GG~~~~~ 213 (306)
T 3ii7_A 138 TQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN-HGLV-F-VKDKIFAVGGQNGLG 213 (306)
T ss_dssp SCCBSCEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBS-CEEE-E-ETTEEEEECCEETTE
T ss_pred CCcceeEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhc-ceEE-E-ECCEEEEEeCCCCCC
Confidence 1111112222 26666666653 3458899998764321 11111111 1222 1 256666666643
Q ss_pred --CeEEEEEcCCCc
Q 014104 340 --GVLRVLDQNTGE 351 (430)
Q Consensus 340 --g~i~vwd~~~~~ 351 (430)
..+.+||+.+.+
T Consensus 214 ~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 214 GLDNVEYYDIKLNE 227 (306)
T ss_dssp EBCCEEEEETTTTE
T ss_pred CCceEEEeeCCCCc
Confidence 357777777553
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.025 Score=54.78 Aligned_cols=223 Identities=13% Similarity=0.048 Sum_probs=122.9
Q ss_pred CCeEEEEecCCCe--eEEeeecCCceeEEEEecCCCEEE-EEe-CCeEEEEEcCCCc--ccccCCCCceeeeeEEEEcCC
Q 014104 131 DKVMRLWSLEGYK--CVEEYSLPNAASLVDFDFDESKIV-GLI-GTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDP 204 (430)
Q Consensus 131 dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~ 204 (430)
...|+..|+.... .......-.....+++++.+..|+ +.. .+.|..+++++.. .......-.....+++.+.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 4567777777542 222333345566789998777777 433 5778888887653 122211112334566665556
Q ss_pred ceE-EEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe--CCCeEEEEeCCCCceeEEEecCCCCCeEE
Q 014104 205 EAV-VGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS--SLGSIAISGLSSDQRVATLRSTDCTGIKT 280 (430)
Q Consensus 205 ~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 280 (430)
.++ +-...+.|.+.++........+...-.....+++.|. ..++.+. ..+.|...++. |.....+....-.....
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG 175 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSSEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCCCCCcE
Confidence 544 4456789999998644332222233445678899864 5454443 24677777765 44333333223447899
Q ss_pred EEEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 281 LCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 281 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
+++++++..|+.+ ...+.|..+|+..........+......+++ +..+ ...++-...+.|...|..+|+....+
T Consensus 176 lald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~-~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i 250 (619)
T 3s94_A 176 LTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALT-LFED-ILYWTDWSTHSILACNKYTGEGLREI 250 (619)
T ss_dssp EEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEE-ESSS-EEEEECTTTCSEEEEESSSCCCCEEC
T ss_pred EEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEE-EeCC-EEEEecCCCCEEEEEECCCCcccEEE
Confidence 9999976666654 4567799999875333222221222334566 4333 44444446778999998877654443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.023 Score=49.67 Aligned_cols=224 Identities=9% Similarity=0.027 Sum_probs=113.7
Q ss_pred eEEEEeC--CCeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEeC----CeEEEEEcCCCccc-ccCCCCcee
Q 014104 124 LILTGVG--DKVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLIG----TRICIWRRNGLRSV-FPSREGTFM 194 (430)
Q Consensus 124 ~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~~----~~i~vwd~~~~~~~-~~~~~~~~~ 194 (430)
.++.|+. ...+.+||..+.+-...-..+.. ....+...++..++ ++.+ ..+.+||+.+.+-. .........
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 93 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRD 93 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCB
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcccc
Confidence 4445554 35788999888664433222211 11122234555554 5433 67889998876521 111111111
Q ss_pred eeeEEEEcCCceEEEecC------CeEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeC---------CCeEE
Q 014104 195 KGLCMRYFDPEAVVGCED------GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSS---------LGSIA 257 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~---------dg~i~ 257 (430)
...+....+..++.|+.+ ..+.+||..+.+-... +...... .++....+.+++.|+. -..+.
T Consensus 94 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 172 (306)
T 3ii7_A 94 SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCS-HGMVEANGLIYVCGGSLGNNVSGRVLNSCE 172 (306)
T ss_dssp SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEESCTTTCEECCCEE
T ss_pred ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcce-eEEEEECCEEEEECCCCCCCCcccccceEE
Confidence 122223344446666654 4688999887653221 1111111 1223335566666653 34588
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCcee--eeeecCCCceEEEEEeeCCC
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSL--WETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~--~~~~~~~~~v~~l~~~s~~~ 330 (430)
+||+.+.+-...-.......-.++... ++++++.|+.+ ..+.+||+.+.+-. ..+.........+. + ++
T Consensus 173 ~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~--~~ 248 (306)
T 3ii7_A 173 VYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA-V--GS 248 (306)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE-E--TT
T ss_pred EeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE-E--CC
Confidence 999987754322111111111222222 66777776643 35899999875422 22221111222222 3 67
Q ss_pred CeEEEEcCC-----CeEEEEEcCCCce
Q 014104 331 STLVVGGID-----GVLRVLDQNTGEV 352 (430)
Q Consensus 331 ~~l~s~~~d-----g~i~vwd~~~~~~ 352 (430)
+.++.|+.+ ..+.+||+.+.+-
T Consensus 249 ~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 249 IVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp EEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred EEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 777888744 5688899887643
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.57 E-value=0.044 Score=49.97 Aligned_cols=215 Identities=9% Similarity=-0.041 Sum_probs=124.4
Q ss_pred ccceeEEEec--CCeEEEE-eCCCeEEEEecCCC----eeEEeee-cCCceeEEEEecCCCEEE-E-EeCCeEEEEEcCC
Q 014104 112 SVGVDQCRMK--RGLILTG-VGDKVMRLWSLEGY----KCVEEYS-LPNAASLVDFDFDESKIV-G-LIGTRICIWRRNG 181 (430)
Q Consensus 112 ~~~v~~~~~~--~~~l~s~-~~dg~i~iwd~~~~----~~~~~~~-~~~~~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~ 181 (430)
...+..++|+ ++.|+-+ ...+.|..+++... .....+. .......+++.+.+..|+ + ...+.|.+.++++
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 4456777884 4544444 45678888887652 2222222 224556688998666665 3 3467899999887
Q ss_pred Cccc-ccCCCCceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEE-eCCCeE
Q 014104 182 LRSV-FPSREGTFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISG-SSLGSI 256 (430)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~-~~dg~i 256 (430)
.... +..........+++.+.+..|+.+.. .+.|...++............-.....+++++ +..|+.+ +..+.|
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I 270 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEE
Confidence 6532 21112222334455554555554442 36788888754333223333335678999995 4555444 566789
Q ss_pred EEEeCCCCceeEEEecC--CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 257 AISGLSSDQRVATLRST--DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
..+|+.... ...+... .......+++. .+.++++-...+.|..+|..+++.+..+........++..++|
T Consensus 271 ~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~ 342 (400)
T 3p5b_L 271 SSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHN 342 (400)
T ss_dssp EEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESG
T ss_pred EEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEee
Confidence 999986433 3333221 22356677773 4455556666788999998888777776654445666664544
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.57 E-value=0.11 Score=54.23 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=153.0
Q ss_pred eEEEEeCCCeEEEEec--CCCeeEEe---eecCCceeEEEEecCCCE-EEEEeCCeEEEEEcCCCcccccCCCCceeeee
Q 014104 124 LILTGVGDKVMRLWSL--EGYKCVEE---YSLPNAASLVDFDFDESK-IVGLIGTRICIWRRNGLRSVFPSREGTFMKGL 197 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~--~~~~~~~~---~~~~~~~~~~~~~~~~~~-l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~ 197 (430)
+|..|-.||.+.-+.+ .+|+.... +-+...+....+...+.. +++..+....++.-++. ..+...... .+.
T Consensus 619 ~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~-l~~s~l~~~--~v~ 695 (1158)
T 3ei3_A 619 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHK-LVFSNVNLK--EVN 695 (1158)
T ss_dssp EEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSS-EEEEEBSSS--CCC
T ss_pred EEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCc-eEEeccChH--Hhc
Confidence 8889999998865544 45554422 333344444555554443 33666666666554432 221111111 122
Q ss_pred EEEEcC----Cc-eEEEecCCeEEEEECCCCe--eeEEeecCCCCeEEEEecCC-CEEEEEeC-----------------
Q 014104 198 CMRYFD----PE-AVVGCEDGTARVFDMYSRK--CSQIIRMHCAPVTSLSLSED-QLIISGSS----------------- 252 (430)
Q Consensus 198 ~~~~~~----~~-l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~~~~~~~-~~l~~~~~----------------- 252 (430)
.++++. +. ++. ..++.++|..+..-+ .++.+. -...+..++++|. +.++.+..
T Consensus 696 ~~~~F~se~~~~g~v~-~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 773 (1158)
T 3ei3_A 696 YMCPLNSDGYPDSLAL-ANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPS 773 (1158)
T ss_dssp EEEEECCSSSTTEEEE-ECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCC
T ss_pred eEeccCcccCCCcEEE-EcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhh
Confidence 233332 22 444 445568888765432 223332 2345666777754 33322210
Q ss_pred --------------------------------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEe---cC-CCEEEEEe--
Q 014104 253 --------------------------------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYN---PC-SRLVFAGT-- 294 (430)
Q Consensus 253 --------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~---~~-~~~l~~~~-- 294 (430)
-+.|++.|..+.+.+..++-.....+.+++.- .+ ..++++|+
T Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~ 853 (1158)
T 3ei3_A 774 ASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAM 853 (1158)
T ss_dssp HHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEE
T ss_pred hhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeee
Confidence 13577888888887777664344455665542 22 46888876
Q ss_pred --------CCCeEEEEeCCCCceeeee-ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEE-EEEeccCc--
Q 014104 295 --------TAGYASCWDLRTMKSLWET-RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS-RCVMDIGS-- 362 (430)
Q Consensus 295 --------~dg~i~i~d~~~~~~~~~~-~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~-- 362 (430)
..|.|++|++..++..... ....++|++++.| +|+ |++|- ..+|++|++...+.++ ........
T Consensus 854 ~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~-Lla~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~ 929 (1158)
T 3ei3_A 854 VYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGK-LLASI-NSTVRLYEWTTEKELRTECNHYNNIMA 929 (1158)
T ss_dssp CCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTE-EEEEE-TTEEEEEEECTTSCEEEEEEECCCSCE
T ss_pred cCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCE-EEEEc-CCEEEEEECCCCceEEEEeeccccEEE
Confidence 3578999998744322111 1235789998755 465 44443 4789999998665444 11111111
Q ss_pred -------ceeeeccCCceEEEeecccccCCcccccCC-CCCCCCeeEEEE-cCeEEEEeeCCCeEEEEEecC
Q 014104 363 -------ASSSSNKVSGVIERNEGRRLSAGCCIDRIP-KTIRPPITCLAV-GMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 363 -------~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~-~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
-.++.|.--..+....... ....+..+. ..+...++++.+ +...++.+..+|.|.+.+.+.
T Consensus 930 ~~l~~~~~~I~vgD~~~Sv~~~~y~~--~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 930 LYLKTKGDFILVGDLMRSVLLLAYKP--MEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEETTEEEEEESSBCEEEEEEET--TTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECT
T ss_pred EEEeccCCEEEEEEhhheEEEEEEEc--CCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCC
Confidence 0122222222222111111 111121111 223457888888 667888899999999998865
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.039 Score=48.76 Aligned_cols=226 Identities=14% Similarity=0.070 Sum_probs=115.1
Q ss_pred cceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeec----CCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---cc
Q 014104 113 VGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL----PNAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SV 185 (430)
Q Consensus 113 ~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~ 185 (430)
..+.++.+.++.++.++.++.|.. ..+.|+.-..... +.....+.+..++..++++.++.|.. ..+.++ .+
T Consensus 80 ~~~~~i~~~~~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~ 157 (327)
T 2xbg_A 80 YRFNSVSFQGNEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQAL 157 (327)
T ss_dssp CEEEEEEEETTEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEE
T ss_pred ccEEEEEecCCeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEe
Confidence 357788886564444556665544 2333443333221 22344455666666666555664432 223332 11
Q ss_pred ccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEEECCCCeeeEEe-ecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 186 FPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVFDMYSRKCSQII-RMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~ 263 (430)
...... ....+....+ .++..+.+|.+..-+-..++.-..+ ......+..+.+.++..++.++.+|.+.+.+...
T Consensus 158 ~~~~~~---~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~ 234 (327)
T 2xbg_A 158 VQEAIG---VMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN 234 (327)
T ss_dssp ECSCCC---CEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTE
T ss_pred ecCCCc---ceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCC
Confidence 111111 1233333222 2444455555544321112222112 2345578888888765566667788887774332
Q ss_pred CceeEEEecC---CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee---cCCCceEEEEEeeCCCCeEEEEc
Q 014104 264 DQRVATLRST---DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR---ISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 264 ~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
++.-..+... ....+.++.+.+++..++++. +|.| .+....++.-..+. .....++.+. +.+++ .+++++
T Consensus 235 G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~-~~~~~-~~~~~G 310 (327)
T 2xbg_A 235 SENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKIL-FFSPD-QGFILG 310 (327)
T ss_dssp EEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEE-EEETT-EEEEEC
T ss_pred CCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEE-EECCC-ceEEEc
Confidence 3332222211 223588999998877766654 6656 34444444333333 1235678887 65444 466677
Q ss_pred CCCeEEEEEc
Q 014104 338 IDGVLRVLDQ 347 (430)
Q Consensus 338 ~dg~i~vwd~ 347 (430)
.+|.|.-++-
T Consensus 311 ~~G~i~~~~~ 320 (327)
T 2xbg_A 311 QKGILLRYVT 320 (327)
T ss_dssp STTEEEEECC
T ss_pred CCceEEEEcC
Confidence 8898777653
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.02 Score=49.86 Aligned_cols=175 Identities=13% Similarity=0.095 Sum_probs=84.8
Q ss_pred CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCeeeEE--eecCCCCeEEEEecC
Q 014104 172 TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSE 243 (430)
Q Consensus 172 ~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~ 243 (430)
..+..||+.+.+-. .................+..++.|+.+ ..+.+||..+.+-... +......- +++...
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~~ 108 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-GAAVLN 108 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEET
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccce-EEEEEC
Confidence 45777887766521 111111111112222233335666644 3588899877653221 11111112 223335
Q ss_pred CCEEEEEeCCC-----eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-------CeEEEEeCCCCceee
Q 014104 244 DQLIISGSSLG-----SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-------GYASCWDLRTMKSLW 311 (430)
Q Consensus 244 ~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~i~d~~~~~~~~ 311 (430)
+.+++.|+.++ .+.+||+.+.+-...-.......-.+++. -+++.++.|+.+ ..+.+||+.+.+-..
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~ 187 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY 187 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE
Confidence 66677776543 58889988765433221111111122222 266666666542 358899988754322
Q ss_pred --eeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCc
Q 014104 312 --ETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGE 351 (430)
Q Consensus 312 --~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~ 351 (430)
.+....... +++ ..+++.++.|+.+ ..+.+||+.+.+
T Consensus 188 ~~~~p~~r~~~-~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 188 IAEMSTRRSGA-GVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ECCCSSCCBSC-EEE--EETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCCCccccccc-cEE--EECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 121111111 222 1256777777654 357788877654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.032 Score=49.01 Aligned_cols=222 Identities=10% Similarity=0.042 Sum_probs=111.0
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCC---ceeEEEEecCCCEEE-EEe----C-------CeEEEEEcCCCccc-cc
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPN---AASLVDFDFDESKIV-GLI----G-------TRICIWRRNGLRSV-FP 187 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~~~----~-------~~i~vwd~~~~~~~-~~ 187 (430)
+++.|+ ..+.+||..+++-.. ...+. .........++..++ ++. + ..+.+||..+.+-. ..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 445555 579999999877543 33221 222233445666655 553 1 12778888876521 11
Q ss_pred CCCCceeeeeEEEEcCCceEEEecC--------CeEEEEECCCCeee--EEeecCCCCeEEEEecCCCEEEEEeC-C---
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCED--------GTARVFDMYSRKCS--QIIRMHCAPVTSLSLSEDQLIISGSS-L--- 253 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~-d--- 253 (430)
..........+....+..++.|+.+ ..+.+||..+.+-. ..+...... .+++...+.+++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~ 162 (315)
T 4asc_A 84 PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG-HTVLSHMDLVYVIGGKGSDRK 162 (315)
T ss_dssp CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCTTSC
T ss_pred CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc-eeEEEECCEEEEEeCCCCCCc
Confidence 1111111112222233335566532 45889998876422 112111111 2233335667777765 2
Q ss_pred --CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC-----eEEEEeCCCCceee--eeecCCCceEEEE
Q 014104 254 --GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG-----YASCWDLRTMKSLW--ETRISPNVVYSLQ 324 (430)
Q Consensus 254 --g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~--~~~~~~~~v~~l~ 324 (430)
..+.+||+.+.+-...-.......-.+++. -++++++.|+.++ .+.+||+.+.+-.. .+....... +++
T Consensus 163 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~ 240 (315)
T 4asc_A 163 CLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSL-SLV 240 (315)
T ss_dssp BCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSC-EEE
T ss_pred ccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccce-eEE
Confidence 468999998765432211111111112222 2667777777654 58889998764322 111111111 222
Q ss_pred EeeCCCCeEEEEcCC--------------CeEEEEEcCCCceE
Q 014104 325 HLQNDTSTLVVGGID--------------GVLRVLDQNTGEVL 353 (430)
Q Consensus 325 ~~s~~~~~l~s~~~d--------------g~i~vwd~~~~~~~ 353 (430)
..+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 241 --~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 241 --SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp --EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred --EECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 2256777777653 24678888766433
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.02 Score=50.20 Aligned_cols=226 Identities=10% Similarity=0.000 Sum_probs=111.7
Q ss_pred cCCeEEEEeCC----CeEEEEecCCCeeEEeeecCCc-eeEEEEecCCCEEE-EEe----C-----CeEEEEEcCCCccc
Q 014104 121 KRGLILTGVGD----KVMRLWSLEGYKCVEEYSLPNA-ASLVDFDFDESKIV-GLI----G-----TRICIWRRNGLRSV 185 (430)
Q Consensus 121 ~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~-~~~----~-----~~i~vwd~~~~~~~ 185 (430)
.+..++.|+.+ ..+.+||..+.+....-..+.. ........++..++ ++. + ..+.+||+.+.+-.
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~ 103 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS 103 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence 33455556532 4688999888664433222211 11122233555544 443 2 46888998876521
Q ss_pred -ccCCCCceeeeeEEEEcCCceEEEecC-----CeEEEEECCCCeeeE--EeecCCCCeEEEEecCCCEEEEEeCC----
Q 014104 186 -FPSREGTFMKGLCMRYFDPEAVVGCED-----GTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSEDQLIISGSSL---- 253 (430)
Q Consensus 186 -~~~~~~~~~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~d---- 253 (430)
............+....+..++.|+.+ ..+.+||+.+.+-.. .+......- +++...+.+++.|+.+
T Consensus 104 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~iyv~GG~~~~~~ 182 (308)
T 1zgk_A 104 PCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGV-GVAVLNRLLYAVGGFDGTNR 182 (308)
T ss_dssp ECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEEETTEEEEECCBCSSCB
T ss_pred ECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccce-EEEEECCEEEEEeCCCCCCc
Confidence 111111111112222334345555533 468889987764322 111111111 2223356677777654
Q ss_pred -CeEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee--eeecCCCceEEEE
Q 014104 254 -GSIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW--ETRISPNVVYSLQ 324 (430)
Q Consensus 254 -g~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~l~ 324 (430)
..+.+||+.+.+-...-...... ...++.+ ++++++.|+.+ ..+.+||+.+.+-.. .+....... +++
T Consensus 183 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~ 259 (308)
T 1zgk_A 183 LNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GIT 259 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEE
T ss_pred CceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEE
Confidence 46889998876543221111111 1222233 66777777654 459999998754322 121111111 222
Q ss_pred EeeCCCCeEEEEcCC-----CeEEEEEcCCCce
Q 014104 325 HLQNDTSTLVVGGID-----GVLRVLDQNTGEV 352 (430)
Q Consensus 325 ~~s~~~~~l~s~~~d-----g~i~vwd~~~~~~ 352 (430)
. .+++.++.|+.+ ..+.+||+.+.+-
T Consensus 260 -~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 260 -V-HQGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp -E-ETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred -E-ECCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 1 256777777643 4578888876543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.12 Score=51.55 Aligned_cols=230 Identities=15% Similarity=0.069 Sum_probs=129.7
Q ss_pred ccceeEEEe-cCCeEEEEeCCCeEEEEecCCCeeEEeeec--CCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC
Q 014104 112 SVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKCVEEYSL--PNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS 188 (430)
Q Consensus 112 ~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 188 (430)
...|.++.- ++|++-.|..+| +..||-..-+....... ...+..+....++...+++ +..+..||..+.+.....
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT-~~Gl~~yd~~~~~f~~~~ 98 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGT-DNGILVYNYRADRYEQPE 98 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEE-TTEEEEEETTTTEECCCS
T ss_pred cceEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEe-CCCeEEEeCCCCEEECcc
Confidence 567899887 466777777777 55666432111110001 1234444445555444565 456889998776422111
Q ss_pred CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee-----cCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 189 REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR-----MHCAPVTSLSLSEDQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~ 263 (430)
......+.++...+..+..++.+ -+..+|..+++.. .+. .....|.++...++..+..|+.+ -+..+|..+
T Consensus 99 -~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~ 174 (758)
T 3ott_A 99 -TDFPTDVRTMALQGDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSN 174 (758)
T ss_dssp -CCCCSCEEEEEEETTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTT
T ss_pred -cCCCceEEEEEecCCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCC
Confidence 11111223333345557777776 6788898766543 221 12346888887755555556654 577888776
Q ss_pred CceeEEEecCC-----CCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 264 DQRVATLRSTD-----CTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 264 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
++.. .+.... ...|.++...+++..|..|+.. -+..+|..+++...........|.++. ...+|.+.+ |+.
T Consensus 175 ~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-Gl~~~~~~~~~~~~~~~l~~~~i~~i~-~d~~g~lWi-gT~ 250 (758)
T 3ott_A 175 GKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-YLFQYFPSTGQIKQTEAFHNNSIKSLA-LDGNGDLLA-GTD 250 (758)
T ss_dssp TEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-EEEEEETTTTEEEEEEEEEEEEEEEEE-ECTTCCEEE-EET
T ss_pred CceE-EecCCCccccccceeEEEEEECCCCEEEEEECC-CCeEEcCCCCeEEeccCCCCCeEEEEE-EcCCCCEEE-EeC
Confidence 6542 222111 1248888888777766666644 488899876643221111234577877 666776554 444
Q ss_pred CCeEEEEEcCCCce
Q 014104 339 DGVLRVLDQNTGEV 352 (430)
Q Consensus 339 dg~i~vwd~~~~~~ 352 (430)
+ -+.+++..+++.
T Consensus 251 ~-Gl~~~~~~~~~~ 263 (758)
T 3ott_A 251 N-GLYVYHNDTTPL 263 (758)
T ss_dssp T-EEEEECCTTSCC
T ss_pred C-ceeEEecCCCcE
Confidence 4 478888776543
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.065 Score=48.42 Aligned_cols=230 Identities=7% Similarity=0.078 Sum_probs=139.6
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC 210 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (430)
+..|.|-|+.++..+.... -.....-++|..+.++--....+.++|+++.+.+....-.. .++-|.+.++..+.-=
T Consensus 47 ~~~vvIiDl~~~~~~~rrp--i~AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e--~VvfWkWis~~~l~lV 122 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRP--ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISLNTVALV 122 (494)
T ss_dssp CCEEEEEETTSTTSCEEEE--CCCSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS--CCCEEEEEETTEEEEE
T ss_pred CCeEEEEECCCCCcceecc--cccceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC--CceEEEecCCCeEEEE
Confidence 3478899988765443222 23344567888888885568999999999987543222111 2466777666633333
Q ss_pred cCCeEEEEECCC-CeeeEEeecCC----CCeEEEEecCC-CEEEEEe-------CCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 211 EDGTARVFDMYS-RKCSQIIRMHC----APVTSLSLSED-QLIISGS-------SLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 211 ~dg~i~vwd~~~-~~~~~~~~~~~----~~i~~~~~~~~-~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
.+..|+-|++.. ..+.+.+..|. ..|.....+++ ++++..+ -.|.+.+|..+.+ .-+.+++ |...
T Consensus 123 T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieG-haa~ 200 (494)
T 1bpo_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG-HAAS 200 (494)
T ss_dssp CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECC-SEEE
T ss_pred cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchhee-eeee
Confidence 356899999964 35666676553 35556666655 5544332 2478889998753 3455555 5433
Q ss_pred eEEEEEecCC---CEEEEEeC---CCeEEEEeCCCC---ceee-----ee--e--cCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 278 IKTLCYNPCS---RLVFAGTT---AGYASCWDLRTM---KSLW-----ET--R--ISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 278 v~~~~~~~~~---~~l~~~~~---dg~i~i~d~~~~---~~~~-----~~--~--~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
...+.+..+. ..++.+.. .+.+.|.++... .+.. .+ . ...+-..++. .++.-..++.-+.-
T Consensus 201 F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamq-vs~kygviyviTK~ 279 (494)
T 1bpo_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDVVFLITKY 279 (494)
T ss_dssp EEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEE-EETTTTEEEEEETT
T ss_pred eEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEE-ecccCCEEEEEecC
Confidence 3333321111 13333332 278888888532 1110 11 1 1123345666 77888888888999
Q ss_pred CeEEEEEcCCCceEEEEEeccCcceeee
Q 014104 340 GVLRVLDQNTGEVLSRCVMDIGSASSSS 367 (430)
Q Consensus 340 g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 367 (430)
|.|++||++++.++..-+.....+++.+
T Consensus 280 G~i~lyDleTgt~i~~nrIs~~~iF~t~ 307 (494)
T 1bpo_A 280 GYIHLYDLETGTCIYMNRISGETIFVTA 307 (494)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred ceEEEEecccceeeeeecccCCceEEec
Confidence 9999999999999998887666554443
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.1 Score=50.53 Aligned_cols=182 Identities=7% Similarity=-0.014 Sum_probs=102.9
Q ss_pred EEEEeCCeEEEEEcCCCc--ccccCCCCceeeeeEEEEcCCceEEE-ecCCeEEEEECCCCee-eEEeecCCCCeEEEEe
Q 014104 166 IVGLIGTRICIWRRNGLR--SVFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRKC-SQIIRMHCAPVTSLSL 241 (430)
Q Consensus 166 l~~~~~~~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~-~~~~~~~~~~i~~~~~ 241 (430)
++-+....|+..++++.. .............+.+.+.+..|+.+ ...+.|..+++..... ...+.........+++
T Consensus 12 ~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp EEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred EEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 345566778888887642 22222222222334444445555444 4467888888765432 2223322356788998
Q ss_pred cC-C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeeeeecCC
Q 014104 242 SE-D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 242 ~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
.+ + +++++-...+.|.+.++... ....+..........++++|.+..|+.... .+.|...++............-
T Consensus 92 D~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~ 170 (619)
T 3s94_A 92 DWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 170 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred EecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCC
Confidence 85 4 45555567789999998744 333443224456889999997666665543 4677777776332222222233
Q ss_pred CceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCC
Q 014104 318 NVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNT 349 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~ 349 (430)
.....++ ++++++.|+.+ ...+.|...|+..
T Consensus 171 ~~P~Gla-ld~~~~~LY~aD~~~~~I~~~~~dG 202 (619)
T 3s94_A 171 YWPNGLT-LDYEEQKLYWADAKLNFIHKSNLDG 202 (619)
T ss_dssp SSEEEEE-EETTTTEEEEEETTTCCEEEESSSC
T ss_pred CCCcEEE-EEccCCEEEEEeCCCCeEEEecCCC
Confidence 5678888 88876666544 4567888888863
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.072 Score=46.50 Aligned_cols=121 Identities=13% Similarity=0.177 Sum_probs=81.1
Q ss_pred CCeEEEEecC-CCEEEEEe-CCCeEEEEeCCCCceeEEEecCC------CCCeEEEEE---ecCCCEEEEEe--------
Q 014104 234 APVTSLSLSE-DQLIISGS-SLGSIAISGLSSDQRVATLRSTD------CTGIKTLCY---NPCSRLVFAGT-------- 294 (430)
Q Consensus 234 ~~i~~~~~~~-~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~---~~~~~~l~~~~-------- 294 (430)
.-..+++|++ +..++.++ ..++|..||...+.......... ...+..+.+ .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 3445788885 35555555 78999999987654433321110 114689999 68888777644
Q ss_pred -----CCCeEEEEeCC---CCceeeeeec-------------CCCceEEEEEeeCCCCeEEEEcCC-CeEEEEEcCCCce
Q 014104 295 -----TAGYASCWDLR---TMKSLWETRI-------------SPNVVYSLQHLQNDTSTLVVGGID-GVLRVLDQNTGEV 352 (430)
Q Consensus 295 -----~dg~i~i~d~~---~~~~~~~~~~-------------~~~~v~~l~~~s~~~~~l~s~~~d-g~i~vwd~~~~~~ 352 (430)
.+..|..||+. +++.+..... -......++ ..++|+.-++++.. +.|...+.. |+.
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva-vD~~GnaYVt~s~~~~~I~rV~pd-G~~ 170 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA-QDRDGNSYVAFALGMPAIARVSAD-GKT 170 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE-ECTTSCEEEEEEESSCEEEEECTT-SCC
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE-ECCCCCEEEeCCCCCCeEEEEeCC-CCE
Confidence 26779999999 7877654431 113477888 99999988888877 888777765 444
Q ss_pred EEEE
Q 014104 353 LSRC 356 (430)
Q Consensus 353 ~~~~ 356 (430)
+..+
T Consensus 171 ~~~~ 174 (334)
T 2p9w_A 171 VSTF 174 (334)
T ss_dssp EEEE
T ss_pred Eeee
Confidence 4433
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0014 Score=57.93 Aligned_cols=111 Identities=8% Similarity=0.000 Sum_probs=74.5
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecC-CCCeEEEEec--C-CCEEEEE--eCCCeEEEEeCCCCceeEEEecC---CCC
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMH-CAPVTSLSLS--E-DQLIISG--SSLGSIAISGLSSDQRVATLRST---DCT 276 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~i~~~~~~--~-~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~---~~~ 276 (430)
+++++.||.|.-+|..+|+....++.. ..++....-. + +..++.+ +.||.+..+|..+|.....+... ...
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~S 92 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTS 92 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTC
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceecc
Confidence 889999999999999999999998754 1233222111 1 2234433 68999999999988665544421 111
Q ss_pred CeEE---EEE-e----cCCCEEEEEeCCCeEEEEeCCCCceeeeeecC
Q 014104 277 GIKT---LCY-N----PCSRLVFAGTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 277 ~v~~---~~~-~----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
++.. ..+ . ..+..+++|+.+|.+...|+++|+.+.++...
T Consensus 93 P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 93 PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 2211 000 0 04557889999999999999999999887643
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.059 Score=47.25 Aligned_cols=175 Identities=10% Similarity=0.011 Sum_probs=85.0
Q ss_pred CeEEEEEcCCCcccccCCC-CceeeeeEEEEcCC-ceEEEec----C-------CeEEEEECCCCeeeEEeecCCCCe--
Q 014104 172 TRICIWRRNGLRSVFPSRE-GTFMKGLCMRYFDP-EAVVGCE----D-------GTARVFDMYSRKCSQIIRMHCAPV-- 236 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~~~~----d-------g~i~vwd~~~~~~~~~~~~~~~~i-- 236 (430)
..+..||..+.+-...... .......+....+. .++.|+. + ..+..||..+++-. .+..-..+-
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-ECCCBSSCEES
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-ECCCCCcchhc
Confidence 6788888887763221111 11111222333333 3666663 1 23778898876532 111111111
Q ss_pred EEEEecCCCEEEEEeCC--------CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-C-----CeEEEE
Q 014104 237 TSLSLSEDQLIISGSSL--------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-A-----GYASCW 302 (430)
Q Consensus 237 ~~~~~~~~~~l~~~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~i~ 302 (430)
.+++...+.+++.|+.+ ..+.+||..+.+-...-.......-.+++. .+++.++.|+. + ..+.+|
T Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y 170 (315)
T 4asc_A 92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVY 170 (315)
T ss_dssp CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEE
T ss_pred eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEE
Confidence 12233355666666632 468999998765322111101111112222 36677777765 2 358999
Q ss_pred eCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCCC-----eEEEEEcCCCc
Q 014104 303 DLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGIDG-----VLRVLDQNTGE 351 (430)
Q Consensus 303 d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~dg-----~i~vwd~~~~~ 351 (430)
|..+.+-.. .+......- +++ ..+++.++.|+.++ .+.+||+.+.+
T Consensus 171 d~~~~~W~~~~~~p~~r~~~-~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 171 DPKKFEWKELAPMQTARSLF-GAT--VHDGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp ETTTTEEEECCCCSSCCBSC-EEE--EETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred eCCCCeEEECCCCCCchhce-EEE--EECCEEEEEeccCCCCccceEEEEECCCCe
Confidence 988754221 111111111 122 22667777777543 47777877653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.17 Score=47.09 Aligned_cols=253 Identities=11% Similarity=0.080 Sum_probs=132.5
Q ss_pred eeEEEEec-CCCEEE-EEe-CCeEEEEEcCCCcccccCCCC--ce--eeeeEE-------EEcCCceEEEecCC------
Q 014104 154 ASLVDFDF-DESKIV-GLI-GTRICIWRRNGLRSVFPSREG--TF--MKGLCM-------RYFDPEAVVGCEDG------ 213 (430)
Q Consensus 154 ~~~~~~~~-~~~~l~-~~~-~~~i~vwd~~~~~~~~~~~~~--~~--~~~~~~-------~~~~~~l~~~~~dg------ 213 (430)
...++++| ++..|+ +.. .+.|++.|++++........+ .. ...+++ ...+..++++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 34688888 455555 433 356888998887643211111 12 233444 44566566665543
Q ss_pred -eEEEEECCC-Ceee-----EEeecCCCCeEEEEecC-C-CEEEEEeCCCeEEEEeCC-------CCce-----------
Q 014104 214 -TARVFDMYS-RKCS-----QIIRMHCAPVTSLSLSE-D-QLIISGSSLGSIAISGLS-------SDQR----------- 266 (430)
Q Consensus 214 -~i~vwd~~~-~~~~-----~~~~~~~~~i~~~~~~~-~-~~l~~~~~dg~i~vwd~~-------~~~~----------- 266 (430)
.|.+++... +... ..+... .....++++| + .++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 366776443 2221 222221 2335678887 3 455566678899999987 5543
Q ss_pred eEE-EecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCC--CCcee--eeeecC---C------------CceE-EEE
Q 014104 267 VAT-LRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLR--TMKSL--WETRIS---P------------NVVY-SLQ 324 (430)
Q Consensus 267 ~~~-~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~--~~~~~--~~~~~~---~------------~~v~-~l~ 324 (430)
... +........+.++|+|+|+.|+.+ .....|+.++.. .+... ..+-+. . .... .+.
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~ 379 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVF 379 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEE
Confidence 122 222133457899999999965544 556788886653 33210 112111 0 1123 232
Q ss_pred Eee-------CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcce----eeeccCCceEEEeecccccCCcccccCCC
Q 014104 325 HLQ-------NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSAS----SSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 325 ~~s-------~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
.. +++.+.++-.....|+.++ .+| .+.++.+...... ...|..||.. . ..
T Consensus 380 -vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G-~v~TiaG~g~~~~~~~~~~~G~~dG~~--------~--------~~ 440 (496)
T 3kya_A 380 -VKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEG-IVSTYAGRGASTSLADGNQWGTDDGDL--------R--------EV 440 (496)
T ss_dssp -EECTTCCSSCCEEEEEEEGGGTEEEEEC-TTC-BEEEEEESCTTHHHHHSCSCCCCCEET--------T--------TT
T ss_pred -EccccccccCCCeEEEEECCCCEEEEEe-CCC-CEEEEecccccccccCccccccCCCCc--------h--------hh
Confidence 43 3455555556667777777 345 3455544321000 0001112210 0 00
Q ss_pred CCCCCeeEEEEc---CeEEEEeeCCCeEEEEEecCC
Q 014104 394 TIRPPITCLAVG---MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 394 ~h~~~v~~v~~~---~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
+.-..-..|+++ +..+++=.....||.++++..
T Consensus 441 a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 441 ARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp CCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred hhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 111245677774 556666667789999988754
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.1 Score=45.50 Aligned_cols=174 Identities=11% Similarity=0.040 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceEEEec----C-----CeEEEEECCCCeeeE--EeecCCCCeEEE
Q 014104 172 TRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAVVGCE----D-----GTARVFDMYSRKCSQ--IIRMHCAPVTSL 239 (430)
Q Consensus 172 ~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~~ 239 (430)
..+.+||..+.+-. .................+..++.|+. + ..+.+||+.+.+-.. .+......- ++
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EE
Confidence 45778888776521 11111111111222223333555554 2 468889987764321 111111122 22
Q ss_pred EecCCCEEEEEeCC-----CeEEEEeCCCCceeEEEecCCCC-CeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCc
Q 014104 240 SLSEDQLIISGSSL-----GSIAISGLSSDQRVATLRSTDCT-GIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMK 308 (430)
Q Consensus 240 ~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~ 308 (430)
+...+.+++.|+.+ ..+.+||+.+.+-...-...... .-..+.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 195 (308)
T 1zgk_A 118 GVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE 195 (308)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE
T ss_pred EEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe
Confidence 22355666666643 46889998876543221111111 1222222 66777777654 458899988754
Q ss_pred eee--eeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCc
Q 014104 309 SLW--ETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGE 351 (430)
Q Consensus 309 ~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~ 351 (430)
-.. .+......-..+. + +++.++.|+.+ ..+.+||+.+.+
T Consensus 196 W~~~~~~p~~r~~~~~~~-~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 196 WRMITAMNTIRSGAGVCV-L--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp EEECCCCSSCCBSCEEEE-E--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EeeCCCCCCccccceEEE-E--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 321 1111111111222 2 56677777654 457888877653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.19 Score=46.85 Aligned_cols=235 Identities=9% Similarity=-0.027 Sum_probs=125.1
Q ss_pred eEEEec--C-CeEEEEeC-CCeEEEEecCCCeeEEeeecC----CceeEEEE-------ecCCCEEE-EEeCC-------
Q 014104 116 DQCRMK--R-GLILTGVG-DKVMRLWSLEGYKCVEEYSLP----NAASLVDF-------DFDESKIV-GLIGT------- 172 (430)
Q Consensus 116 ~~~~~~--~-~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~l~-~~~~~------- 172 (430)
..|+|+ + +.|+.+.. .+.|++.|++++......... .....++| +++++.|+ +...+
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~ 221 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESP 221 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCc
Confidence 356664 2 34444443 467888998887665544332 23667999 99999666 43332
Q ss_pred eEEEEEcCC-Ccccc-----cCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECC-------CCee-----------eE
Q 014104 173 RICIWRRNG-LRSVF-----PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMY-------SRKC-----------SQ 227 (430)
Q Consensus 173 ~i~vwd~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~-------~~~~-----------~~ 227 (430)
.+.+++... +.... ..........+++.+.+.. +++-..++.|..+|+. ++.. ..
T Consensus 222 ~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~ 301 (496)
T 3kya_A 222 SVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFK 301 (496)
T ss_dssp EEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEE
T ss_pred eEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccc
Confidence 266665443 11110 0000111122334443344 4455567889999987 4543 11
Q ss_pred E-ee-cCCCCeEEEEecCC-CE-EEEEeCCCeEEEEeC--CCCce--eEEEecC--C------------CCCeE-EEEEe
Q 014104 228 I-IR-MHCAPVTSLSLSED-QL-IISGSSLGSIAISGL--SSDQR--VATLRST--D------------CTGIK-TLCYN 284 (430)
Q Consensus 228 ~-~~-~~~~~i~~~~~~~~-~~-l~~~~~dg~i~vwd~--~~~~~--~~~~~~~--~------------~~~v~-~~~~~ 284 (430)
. +. +.......++++|+ +. +++-+....|+.+|. .++.. ...+-+. . -.... .+...
T Consensus 302 ~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd 381 (496)
T 3kya_A 302 QLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVK 381 (496)
T ss_dssp EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEE
T ss_pred eeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEc
Confidence 2 21 12344678999976 64 455566788998664 33322 1222221 0 01344 45554
Q ss_pred -------cCCCEEEEEeCCCeEEEEeCCCCceeeeeecC------------------------CCceEEEEEeeCC-CCe
Q 014104 285 -------PCSRLVFAGTTAGYASCWDLRTMKSLWETRIS------------------------PNVVYSLQHLQND-TST 332 (430)
Q Consensus 285 -------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------------------------~~~v~~l~~~s~~-~~~ 332 (430)
++|.+.++-.....|+.++. ++. +.++-+. -.....++ ++++ |.+
T Consensus 382 ~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa-vd~~~g~l 458 (496)
T 3kya_A 382 NPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV-YDDVKEMF 458 (496)
T ss_dssp CTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE-EETTTTEE
T ss_pred cccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEE-EECCCCEE
Confidence 45666666667788999984 453 3333321 02245666 6665 555
Q ss_pred EEEEcCCCeEEEEEcCCCceE
Q 014104 333 LVVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 333 l~s~~~dg~i~vwd~~~~~~~ 353 (430)
.++=.....|+.++++....+
T Consensus 459 yVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 459 YVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEEETTTTEEEEEEECCCC--
T ss_pred EEEeCCCCEEEEEECCCCccc
Confidence 555556667777776644443
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.073 Score=47.58 Aligned_cols=142 Identities=13% Similarity=0.009 Sum_probs=66.6
Q ss_pred CeEEEEECCCCeee--EEeecCCCCeEEEEecCCCEEEEEeC------CCeEEEEeC--CCCceeEEEec-CCCC-CeEE
Q 014104 213 GTARVFDMYSRKCS--QIIRMHCAPVTSLSLSEDQLIISGSS------LGSIAISGL--SSDQRVATLRS-TDCT-GIKT 280 (430)
Q Consensus 213 g~i~vwd~~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~------dg~i~vwd~--~~~~~~~~~~~-~~~~-~v~~ 280 (430)
..+.+||+.+.+-. ..+......-.+++...+.+++.|+. ...+..||+ .+.+-.. +.. .... ....
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~-~~~~~~~~~~~~~ 246 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK-LAPVSSPDGVAGG 246 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEE-CCCSSTTTCCBSC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEe-cCCCCCCcccccc
Confidence 57999999876432 22221111112344445666677653 345777877 4433221 111 0111 1111
Q ss_pred EEEecCCCEEEEEeCC----------------------CeEEEEeCCCCce--eeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 281 LCYNPCSRLVFAGTTA----------------------GYASCWDLRTMKS--LWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 281 ~~~~~~~~~l~~~~~d----------------------g~i~i~d~~~~~~--~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
.+...++++++.|+.+ ..+.+||+.+.+- +..+......-.+ ...+++.++.|
T Consensus 247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~---~~~~~~i~v~G 323 (357)
T 2uvk_A 247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS---LPWNNSLLIIG 323 (357)
T ss_dssp EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE---EEETTEEEEEE
T ss_pred eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee---EEeCCEEEEEe
Confidence 1222366777777632 2478899886542 2222222111112 22467777888
Q ss_pred cCCC------eEEEEEcCCCceEEEEEe
Q 014104 337 GIDG------VLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 337 ~~dg------~i~vwd~~~~~~~~~~~~ 358 (430)
+.++ .|.++++++++.+.....
T Consensus 324 G~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 324 GETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp EECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred eeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 7542 456668887776655443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.058 Score=56.20 Aligned_cols=231 Identities=8% Similarity=0.087 Sum_probs=131.6
Q ss_pred CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEe
Q 014104 131 DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGC 210 (430)
Q Consensus 131 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (430)
...|.|-|+.++..+.. .+-..-..-++|..+.++--...++.++|+++...+....-.. .++-|.+.++..+.-=
T Consensus 47 ~~~vvIidl~~~~~~~r--rpi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e--~VvfWkWis~~~l~lV 122 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIR--RPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISLNTVALV 122 (1630)
T ss_pred CceEEEEECCCCCCccc--ccccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCC--CceEEEecCCCeeEEE
Confidence 34788889887654422 2223334556788888875568899999999876443222212 3567777777733333
Q ss_pred cCCeEEEEECCC-CeeeEEeecC----CCCeEEEEecCC-CEEEEEe-------CCCeEEEEeCCCCceeEEEecCCCCC
Q 014104 211 EDGTARVFDMYS-RKCSQIIRMH----CAPVTSLSLSED-QLIISGS-------SLGSIAISGLSSDQRVATLRSTDCTG 277 (430)
Q Consensus 211 ~dg~i~vwd~~~-~~~~~~~~~~----~~~i~~~~~~~~-~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~ 277 (430)
.+..|+-|++.. ..+.+.+..| ...|..-..+++ ++++..+ -.|.+.+|..+.+. -+.+++ |...
T Consensus 123 T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg-ha~~ 200 (1630)
T 1xi4_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG-HAAS 200 (1630)
T ss_pred cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH-hHhh
Confidence 345899999964 2455555544 335555566655 4444322 35788899876433 233444 3332
Q ss_pred eEEEEEe--cCCCEEEE-Ee---CCCeEEEEeCCCC---ceeee-------ee--cCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 278 IKTLCYN--PCSRLVFA-GT---TAGYASCWDLRTM---KSLWE-------TR--ISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 278 v~~~~~~--~~~~~l~~-~~---~dg~i~i~d~~~~---~~~~~-------~~--~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
...+... +....|++ +. ..+.+.|-++... .+... +. ...+-..++. .++.-..+..-+.-
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~-vs~k~g~iy~itk~ 279 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDVVFLITKY 279 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE-eccccCEEEEEecC
Confidence 2222221 11112222 11 1267888887432 11110 00 1122334555 67777788888889
Q ss_pred CeEEEEEcCCCceEEEEEeccCcceeeec
Q 014104 340 GVLRVLDQNTGEVLSRCVMDIGSASSSSN 368 (430)
Q Consensus 340 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 368 (430)
|.|+++|+.+|.++..-+.....+++.+.
T Consensus 280 G~~~~~d~~t~~~i~~~ris~~~iF~~~~ 308 (1630)
T 1xi4_A 280 GYIHLYDLETGTCIYMNRISGETIFVTAP 308 (1630)
T ss_pred ceEEEEecccchhhhhccccCCceEEecc
Confidence 99999999999998777665555544443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.15 Score=44.64 Aligned_cols=222 Identities=14% Similarity=0.080 Sum_probs=107.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE-EEe----CC-------eEEEEEcCCCccc-cc
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV-GLI----GT-------RICIWRRNGLRSV-FP 187 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~-~~~----~~-------~i~vwd~~~~~~~-~~ 187 (430)
.++.|+. .+.+||..+++... ...+ ..........++..++ |+. ++ .+.+||..+.+-. ..
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~-~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL-TALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE-EEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECCCCCceec-ccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 3444443 48899998877544 2221 1122233445666555 542 11 2777888776521 11
Q ss_pred CCCCceeeeeEEEEcCCceEEEecC-------CeEEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeC------
Q 014104 188 SREGTFMKGLCMRYFDPEAVVGCED-------GTARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSS------ 252 (430)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~------ 252 (430)
..........+....+..++.|+.+ ..+.+||+.+.+-... +...... .+++...+.+++.|+.
T Consensus 95 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~ 173 (318)
T 2woz_A 95 PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYG-HNVISHNGMIYCLGGKTDDKKC 173 (318)
T ss_dssp CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEES-CEEEEETTEEEEECCEESSSCB
T ss_pred CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccc-cEEEEECCEEEEEcCCCCCCCc
Confidence 1111111112222334446666653 3588899877643221 1110011 1222335566666653
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceee--eeecCCCceEEEEE
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLW--ETRISPNVVYSLQH 325 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~--~~~~~~~~v~~l~~ 325 (430)
-..+.+||+.+.+-...-.......-.+++.. +++.++.|+.+ ..+.+||+.+.+-.. .+....... +++
T Consensus 174 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~- 250 (318)
T 2woz_A 174 TNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI-SLV- 250 (318)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC-EEE-
T ss_pred cceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce-EEE-
Confidence 24689999987754332111111111222222 66777777643 357789988754221 121111111 222
Q ss_pred eeCCCCeEEEEcCC--------------CeEEEEEcCCCceE
Q 014104 326 LQNDTSTLVVGGID--------------GVLRVLDQNTGEVL 353 (430)
Q Consensus 326 ~s~~~~~l~s~~~d--------------g~i~vwd~~~~~~~ 353 (430)
..+++.++.|+.+ ..+.+||+.+.+-.
T Consensus 251 -~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 291 (318)
T 2woz_A 251 -SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWA 291 (318)
T ss_dssp -EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEE
T ss_pred -EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEeh
Confidence 2356777776643 35778888766543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.35 Score=48.18 Aligned_cols=191 Identities=16% Similarity=0.113 Sum_probs=104.6
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcC-CceEEEecCCeEEEEECCCCeeeEEeec
Q 014104 153 AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFD-PEAVVGCEDGTARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 231 (430)
.+.++.-..+|..-+++.+| +..||-...+............+.++..+. ..|..|+.+| +..||..+.+.......
T Consensus 23 ~V~~I~qD~~G~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~~~~ 100 (758)
T 3ott_A 23 VVSCFLQDSEGLIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQPETD 100 (758)
T ss_dssp CEEEEEECTTSCEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCCSCC
T ss_pred eEEEEEECCCCCEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECcccC
Confidence 44445555566555566554 556664322111110111112234544444 3477887765 78899877654321111
Q ss_pred CCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEe----cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 232 HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLR----STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM 307 (430)
Q Consensus 232 ~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 307 (430)
....|.++... +..+..++.+ -+..+|..+++.. .+. ......|.++...++|.+.+ |+.+| +..||..++
T Consensus 101 ~~~~i~~i~~~-~g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~ 175 (758)
T 3ott_A 101 FPTDVRTMALQ-GDTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNG 175 (758)
T ss_dssp CCSCEEEEEEE-TTEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTT
T ss_pred CCceEEEEEec-CCcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCC
Confidence 22357776553 4456666665 6888998765543 331 11234688888887777555 55555 888888765
Q ss_pred ceeee-eec----CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCce
Q 014104 308 KSLWE-TRI----SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 308 ~~~~~-~~~----~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~ 352 (430)
+.... ... ....|.++. ..+++..|..|+. +-+..+|..+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~i~~i~-~d~~~~~lWigt~-~Gl~~~~~~~~~~ 223 (758)
T 3ott_A 176 KFEGIPLPVHSSQSNLFVNSLL-EDTTRQCVWIGTE-GYLFQYFPSTGQI 223 (758)
T ss_dssp EEEEECCCCCTTCSSCCEEEEE-EETTTTEEEEEEE-EEEEEEETTTTEE
T ss_pred ceEEecCCCccccccceeEEEE-EECCCCEEEEEEC-CCCeEEcCCCCeE
Confidence 43211 111 113477776 6666665555553 4588899876653
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.19 Score=44.84 Aligned_cols=50 Identities=8% Similarity=-0.120 Sum_probs=27.1
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCe-EEEEEecCCCEEEEEeC------CCeEEEEeC
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGI-KTLCYNPCSRLVFAGTT------AGYASCWDL 304 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~------dg~i~i~d~ 304 (430)
..+.+||..+.+-...-.......- .+++.. ++++++.|+. ...+.+||+
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~ 224 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDF 224 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEEC
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEe
Confidence 5799999987764433221111111 233332 5666666653 235777876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.13 Score=53.69 Aligned_cols=227 Identities=13% Similarity=0.172 Sum_probs=135.6
Q ss_pred CeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---ccccCCCCc-eeeeeE
Q 014104 123 GLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SVFPSREGT-FMKGLC 198 (430)
Q Consensus 123 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~~~~~~~~-~~~~~~ 198 (430)
..+++--...++.|+|+++...++.+..++.+....|- +.+.|+--++..|..|++.+.. .++..+..- ...++.
T Consensus 77 ~~iiALrag~~lQiFnl~~k~klks~~~~e~VvfWkWi-s~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIin 155 (1630)
T 1xi4_A 77 SKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWI-SLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIIN 155 (1630)
T ss_pred cceEEEecCCeEEEeehHHhhhhcccccCCCceEEEec-CCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEE
Confidence 34444445789999999998889888887776666664 3445556678899999997533 233333211 122233
Q ss_pred EEEc--CCc-eEEEe------cCCeEEEEECCCCeeeEEeecCCCCeEEEEec--C--CCEEEEEeC---CCeEEEEeCC
Q 014104 199 MRYF--DPE-AVVGC------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLS--E--DQLIISGSS---LGSIAISGLS 262 (430)
Q Consensus 199 ~~~~--~~~-l~~~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~--~--~~~l~~~~~---dg~i~vwd~~ 262 (430)
...+ ... +++|- -.|.+.+|..+. +.-+.+.||.+....+... + ...+..+.. .+.+.+-++.
T Consensus 156 Y~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~ 234 (1630)
T 1xi4_A 156 YRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVG 234 (1630)
T ss_pred eeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecC
Confidence 3333 233 33332 358889998754 3445677776665555553 1 123333322 2688888885
Q ss_pred CC---ceeE------EEec--CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC
Q 014104 263 SD---QRVA------TLRS--TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 263 ~~---~~~~------~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~ 331 (430)
.. .... .+.. ....-..++..++.-..+..-+.-|.|.+||+.++.++..-+.....|...+...+.+.
T Consensus 235 ~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g 314 (1630)
T 1xi4_A 235 TPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAG 314 (1630)
T ss_pred CCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCc
Confidence 43 1111 0110 01223456777777778888889999999999999998776666667766652223333
Q ss_pred eEEEEcCCCeEEEEEcCCCce
Q 014104 332 TLVVGGIDGVLRVLDQNTGEV 352 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~ 352 (430)
++.....|.|.--.+.....
T Consensus 315 -~~~vnr~G~vl~v~v~~~~i 334 (1630)
T 1xi4_A 315 -IIGVNRKGQVLSVCVEEENI 334 (1630)
T ss_pred -eEEEcCCceEEEEEEccchh
Confidence 44444677776666654443
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.27 Score=43.87 Aligned_cols=224 Identities=11% Similarity=-0.021 Sum_probs=114.4
Q ss_pred eEEEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCee--EEeee----cCCceeEEEEecC---CCEEE-EEe-C
Q 014104 104 DIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYKC--VEEYS----LPNAASLVDFDFD---ESKIV-GLI-G 171 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~----~~~~~~~~~~~~~---~~~l~-~~~-~ 171 (430)
.+..+...-..-..++| ++|.++.+..+|.|.+++ +++. +..+. ......-++++|+ +..|+ +.. .
T Consensus 22 ~~~~va~~l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~ 99 (352)
T 2ism_A 22 RVEEVVGGLEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA 99 (352)
T ss_dssp CEEEEECCCSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred EEEEEECCCCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence 44445444445678888 677666677789999998 3332 22221 1245566999998 55555 333 2
Q ss_pred -----CeEEEEEcCCCc-----cccc-C----CCCceeeeeEEEEcCCceEEEec--------------CCeEEEEECCC
Q 014104 172 -----TRICIWRRNGLR-----SVFP-S----REGTFMKGLCMRYFDPEAVVGCE--------------DGTARVFDMYS 222 (430)
Q Consensus 172 -----~~i~vwd~~~~~-----~~~~-~----~~~~~~~~~~~~~~~~~l~~~~~--------------dg~i~vwd~~~ 222 (430)
+.|..++..... .++. . ...|....+.+.+++. |+.+.. .|.|.-++...
T Consensus 100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG 178 (352)
T 2ism_A 100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEG 178 (352)
T ss_dssp TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTS
T ss_pred CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCC
Confidence 678888877531 1221 1 1123333455555553 333321 25666666542
Q ss_pred C------------eeeEEe-ecCCCCeEEEEecC-CCEEEEEe-CCCe--------EEEEeCCCCc--------------
Q 014104 223 R------------KCSQII-RMHCAPVTSLSLSE-DQLIISGS-SLGS--------IAISGLSSDQ-------------- 265 (430)
Q Consensus 223 ~------------~~~~~~-~~~~~~i~~~~~~~-~~~l~~~~-~dg~--------i~vwd~~~~~-------------- 265 (430)
. .....+ .++ .....++|+| +..|.++. .... |.+. ..+.
T Consensus 179 ~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~~~~~ 255 (352)
T 2ism_A 179 EPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGRGNDP 255 (352)
T ss_dssp SBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSCCCCT
T ss_pred CCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCCCCCC
Confidence 0 000111 122 2245678887 43344332 2222 3322 2221
Q ss_pred ----eeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce------eeeeecCCCceEEEEEeeCCCCeEEE
Q 014104 266 ----RVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS------LWETRISPNVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 266 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~v~~l~~~s~~~~~l~s 335 (430)
++..+. .......++| .+|.++++....+.|...++..... ...+......+..++ +.|||.+.++
T Consensus 256 ~~~~p~~~~~--~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~-~~pdG~lyv~ 331 (352)
T 2ism_A 256 RYRDPLYFWP--QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQ-VGPDGALYVT 331 (352)
T ss_dssp TSCCCSEECT--TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEE-ECTTSCEEEE
T ss_pred CCcCCeEecC--CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEE-ECCCCcEEEE
Confidence 122221 2234567777 4677666666667788877764331 112222235677887 8888876655
Q ss_pred Ec
Q 014104 336 GG 337 (430)
Q Consensus 336 ~~ 337 (430)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 43
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.29 Score=44.25 Aligned_cols=154 Identities=9% Similarity=0.038 Sum_probs=96.8
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC-----CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-----NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLC 198 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~ 198 (430)
.++.+- ++.||.-++......+.+..+ ..+..+.++|+|++|+...+..|.|..+..+....... +
T Consensus 34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~-~------- 104 (452)
T 3pbp_A 34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDV-S------- 104 (452)
T ss_dssp EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCH-H-------
T ss_pred EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCccc-c-------
Confidence 444333 468888887744444444443 24566999999999998888899998877432111000 0
Q ss_pred EEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC----CCEEEEEeCCCeEEEEeCCCCc--eeEEEec
Q 014104 199 MRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE----DQLIISGSSLGSIAISGLSSDQ--RVATLRS 272 (430)
Q Consensus 199 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~----~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~ 272 (430)
+ ..--.++-|.+..-+ .....+|..+.|+| +..+++-..|+.|++||+.... +. .++.
T Consensus 105 -------~---~~~~q~~ty~l~~~~-----~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k 168 (452)
T 3pbp_A 105 -------I---QDAFQIFHYSIDEEE-----VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNK 168 (452)
T ss_dssp -------H---HHTTEEEEEEGGGCC-------CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESC
T ss_pred -------c---ccccceeEEEcCCcc-----cCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhc
Confidence 0 000124445553211 11367899999998 3689999999999999998522 12 2221
Q ss_pred --------CCCCCeEEEEEecCCCEEEEEe--CCCeEEEE
Q 014104 273 --------TDCTGIKTLCYNPCSRLVFAGT--TAGYASCW 302 (430)
Q Consensus 273 --------~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~ 302 (430)
.....|.+++|.+++-.|...+ ..|.|+-.
T Consensus 169 ~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 169 PNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1224789999999887777755 77887665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=64.56 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=29.4
Q ss_pred CCCccCCcHHHHHHHhcCCC-hhhhHHHHhhhHHHHHh
Q 014104 21 RATIESLNGDIICMIFSSLG-FFDLVRCSAVCKSWNAI 57 (430)
Q Consensus 21 ~~~~~~Lp~e~~~~i~~~l~-~~~l~~~~~v~~~w~~~ 57 (430)
.+.+..||+|++.+||+||+ .+++.++++|||+|+.+
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 36788999999999999999 99999999999999988
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.55 E-value=0.35 Score=42.25 Aligned_cols=132 Identities=8% Similarity=0.049 Sum_probs=64.3
Q ss_pred EEEEECCCCeeeEE--eecCCCCeEEEEecCCCEEEEEeCC-------CeEEEEeCCCCceeEEEecCCCCCeEEEEEec
Q 014104 215 ARVFDMYSRKCSQI--IRMHCAPVTSLSLSEDQLIISGSSL-------GSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285 (430)
Q Consensus 215 i~vwd~~~~~~~~~--~~~~~~~i~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 285 (430)
+..||..+.+-... +...... .+++...+.+++.|+.+ ..+.+||+.+.+-...-.......-.+++. .
T Consensus 80 ~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~ 157 (318)
T 2woz_A 80 FFQLDNVSSEWVGLPPLPSARCL-FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H 157 (318)
T ss_dssp EEEEETTTTEEEECSCBSSCBCS-CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E
T ss_pred EEEEeCCCCcEEECCCCCccccc-cceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E
Confidence 77889877643221 1111111 22333355666677653 358889988765433211101111112222 3
Q ss_pred CCCEEEEEeC------CCeEEEEeCCCCceee--eeecCCCceEEEEEeeCCCCeEEEEcCC-----CeEEEEEcCCCc
Q 014104 286 CSRLVFAGTT------AGYASCWDLRTMKSLW--ETRISPNVVYSLQHLQNDTSTLVVGGID-----GVLRVLDQNTGE 351 (430)
Q Consensus 286 ~~~~l~~~~~------dg~i~i~d~~~~~~~~--~~~~~~~~v~~l~~~s~~~~~l~s~~~d-----g~i~vwd~~~~~ 351 (430)
++++++.|+. -..+.+||+.+.+-.. .+...... .+++ . -+++.++.|+.+ ..+.+||+.+.+
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVA-I-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBS-CEEE-E-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCccc-ceEE-E-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 6677677654 2358999998764222 11111111 1222 1 256666666643 346677776553
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.65 Score=41.33 Aligned_cols=140 Identities=14% Similarity=0.126 Sum_probs=72.1
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCccccc-C----CCCceeeeeEEEEc---CCceEEEecC------CeEEE
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP-S----REGTFMKGLCMRYF---DPEAVVGCED------GTARV 217 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~-~----~~~~~~~~~~~~~~---~~~l~~~~~d------g~i~v 217 (430)
.....+++.++++.+++...+.|.+++ ......+. . ........+++.++ +..++++... +.|..
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r 109 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR 109 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence 456679999999987788889999998 33221111 1 11112223444333 2345554432 57888
Q ss_pred EECCCCe-----ee-EEee---cCCCCeEEEEecCCCEEEEEe-C-------------CCeEEEEeCCCC----------
Q 014104 218 FDMYSRK-----CS-QIIR---MHCAPVTSLSLSEDQLIISGS-S-------------LGSIAISGLSSD---------- 264 (430)
Q Consensus 218 wd~~~~~-----~~-~~~~---~~~~~i~~~~~~~~~~l~~~~-~-------------dg~i~vwd~~~~---------- 264 (430)
++...+. .+ ..+. ........++|.|+..|+.+. . .|.|.-+|....
T Consensus 110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~ 189 (352)
T 2ism_A 110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR 189 (352)
T ss_dssp EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence 8876431 11 1132 111123578998774444432 1 256666665420
Q ss_pred --ceeEEEecCCCCCeEEEEEec-CCCEEEEE
Q 014104 265 --QRVATLRSTDCTGIKTLCYNP-CSRLVFAG 293 (430)
Q Consensus 265 --~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 293 (430)
.....+...+ .....++|+| +|+++++-
T Consensus 190 ~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d 220 (352)
T 2ism_A 190 RGARPEVYSLGH-RNPQGLAWHPKTGELFSSE 220 (352)
T ss_dssp TTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred CCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence 0111111112 2367789999 66655543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.8 Score=40.67 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=78.7
Q ss_pred CCeEEEEECCCC--e--eeEEeecC-CCCeEEEEecCC-CEEEEEe-----------------CCCeEEEEeCCCCceeE
Q 014104 212 DGTARVFDMYSR--K--CSQIIRMH-CAPVTSLSLSED-QLIISGS-----------------SLGSIAISGLSSDQRVA 268 (430)
Q Consensus 212 dg~i~vwd~~~~--~--~~~~~~~~-~~~i~~~~~~~~-~~l~~~~-----------------~dg~i~vwd~~~~~~~~ 268 (430)
+.+|.+|++... . .+..+.+. -...+.+.+.++ .+.++.. ..|.|..+|.. +. .
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~-~ 214 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DV-R 214 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CC-E
T ss_pred CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eE-E
Confidence 456777765443 2 22333322 235688888865 4444432 12456666653 32 2
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCC-Cce--eeeeecCCCceEEEEEeeC-CCCeEEEEcCC-CeE
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRT-MKS--LWETRISPNVVYSLQHLQN-DTSTLVVGGID-GVL 342 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~-~~~--~~~~~~~~~~v~~l~~~s~-~~~~l~s~~~d-g~i 342 (430)
.+.. .-...+.++|+||++.|+.+. ..+.|..|++.. ++. ...+. ..+..-.++ +.+ +|.+.+++..+ +.|
T Consensus 215 ~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~-vD~e~G~lwva~~~~g~~v 291 (355)
T 3sre_A 215 VVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNIS-VDPVTGDLWVGCHPNGMRI 291 (355)
T ss_dssp EEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEE-ECTTTCCEEEEEESCHHHH
T ss_pred Eeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEE-EeCCCCcEEEEecCCceEE
Confidence 2221 223678999999998877654 568899999863 322 12232 235566777 888 58877766544 355
Q ss_pred EEEEcC--CCceEEEEE
Q 014104 343 RVLDQN--TGEVLSRCV 357 (430)
Q Consensus 343 ~vwd~~--~~~~~~~~~ 357 (430)
..||.. .+..+..+.
T Consensus 292 ~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 292 FFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp HSCCTTSCCCEEEEEEE
T ss_pred EEECCCCCCCCEEEEEE
Confidence 555544 244444444
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=1.2 Score=39.43 Aligned_cols=135 Identities=7% Similarity=0.129 Sum_probs=81.0
Q ss_pred cCCeEEEEECCCC--eee-EEeec-----CCCCeEEEEecC---CC--EEEEEeC--CCeEEEEeCCCCc----eeEEEe
Q 014104 211 EDGTARVFDMYSR--KCS-QIIRM-----HCAPVTSLSLSE---DQ--LIISGSS--LGSIAISGLSSDQ----RVATLR 271 (430)
Q Consensus 211 ~dg~i~vwd~~~~--~~~-~~~~~-----~~~~i~~~~~~~---~~--~l~~~~~--dg~i~vwd~~~~~----~~~~~~ 271 (430)
.+|.|.++|..+. +.. ..+.+ .......+.+.+ +. ++++-.. +.+|.+|++..+. .+.++.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6889999998732 211 12222 123556677643 32 3444333 4678887765432 234454
Q ss_pred cCCCCCeEEEEEecCCCEEEEEe-----------------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE
Q 014104 272 STDCTGIKTLCYNPCSRLVFAGT-----------------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~ 334 (430)
+..-.....+.+.++|.+.++.. ..|.|+-+|.. + +..+...-..-+.++ ++||++.|+
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia-~spDg~~lY 236 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGIN-ISPDGKYVY 236 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEE-ECTTSSEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcce-ECCCCCEEE
Confidence 43344789999999999877754 12456666653 2 222222234568888 999998776
Q ss_pred EE-cCCCeEEEEEcCC
Q 014104 335 VG-GIDGVLRVLDQNT 349 (430)
Q Consensus 335 s~-~~dg~i~vwd~~~ 349 (430)
.+ +..+.|..|++..
T Consensus 237 vadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 237 IAELLAHKIHVYEKHA 252 (355)
T ss_dssp EEEGGGTEEEEEEECT
T ss_pred EEeCCCCeEEEEEECC
Confidence 55 4678999999863
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0056 Score=59.26 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=31.4
Q ss_pred cCCcHHHHHHHhcCC-ChhhhHHHHhhhHHHHHh
Q 014104 25 ESLNGDIICMIFSSL-GFFDLVRCSAVCKSWNAI 57 (430)
Q Consensus 25 ~~Lp~e~~~~i~~~l-~~~~l~~~~~v~~~w~~~ 57 (430)
..||+|++.+||+|| +++++.+++.|||+|+.+
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~ 47 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI 47 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence 469999999999999 899999999999999987
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.24 E-value=1.7 Score=39.37 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=88.9
Q ss_pred cCCceEEEecCCeEEEEECCCCeeeEEeecC----CCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCc-----------
Q 014104 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMH----CAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQ----------- 265 (430)
Q Consensus 202 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~----------- 265 (430)
.+..++.+- ++.||.-++.....-+.++.. -+.|..+..+|+ .+++.. .+..|.|-.+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccccc
Confidence 344455444 468888888754444455432 236788999986 555554 46788888876322
Q ss_pred -eeEEEecC-----CCCCeEEEEEecCC---CEEEEEeCCCeEEEEeCCCC--ceeeeee---------cCCCceEEEEE
Q 014104 266 -RVATLRST-----DCTGIKTLCYNPCS---RLVFAGTTAGYASCWDLRTM--KSLWETR---------ISPNVVYSLQH 325 (430)
Q Consensus 266 -~~~~~~~~-----~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~--~~~~~~~---------~~~~~v~~l~~ 325 (430)
..+.+.-+ ...+|..+.|+|-+ ..|++-..|+.|++||+... ++. .+. .....|.+++
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~- 186 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE- 186 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE-
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE-
Confidence 12233321 24579999999964 58999999999999999852 222 221 1224577887
Q ss_pred eeCCCCeEEEEc--CCCeEEEEE
Q 014104 326 LQNDTSTLVVGG--IDGVLRVLD 346 (430)
Q Consensus 326 ~s~~~~~l~s~~--~dg~i~vwd 346 (430)
|+.++-.|...+ ..|.|+-.-
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEES
T ss_pred EcCCCcEEEEEecCCCCCEEEEC
Confidence 888776665544 677776543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=2.7 Score=41.34 Aligned_cols=147 Identities=11% Similarity=0.056 Sum_probs=76.4
Q ss_pred CceEEEecC----CeEEEEECCCCeeeEEe-e-------cCCCCeEEEEec-CCCEEEEEeCC------CeEEEEeCCCC
Q 014104 204 PEAVVGCED----GTARVFDMYSRKCSQII-R-------MHCAPVTSLSLS-EDQLIISGSSL------GSIAISGLSSD 264 (430)
Q Consensus 204 ~~l~~~~~d----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~~~~~-~~~~l~~~~~d------g~i~vwd~~~~ 264 (430)
..++.|+.+ ..+.+||..+++-...- . .....-..+.+. .+.+++.|+.+ ..+.+||..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 335556543 46888998776532221 1 111122333333 55677777643 35788998876
Q ss_pred ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeee-----eecCCCceEEEEEeeCC-CCeEEEE
Q 014104 265 QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG--YASCWDLRTMKSLWE-----TRISPNVVYSLQHLQND-TSTLVVG 336 (430)
Q Consensus 265 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~i~d~~~~~~~~~-----~~~~~~~v~~l~~~s~~-~~~l~s~ 336 (430)
+-...-.......-.+++.-.+++.++.|+.++ .+.+||..+.+-... .......-..+. +..+ ++.++.|
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v-~~~~~~~iyv~G 557 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLE-FDPVSKQGIILG 557 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEE-EETTTTEEEEEC
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEE-EeCCCCEEEEEC
Confidence 533221110111112233324788888887654 689999987543211 111111122233 4444 5666667
Q ss_pred cC--C-----CeEEEEEcCCCc
Q 014104 337 GI--D-----GVLRVLDQNTGE 351 (430)
Q Consensus 337 ~~--d-----g~i~vwd~~~~~ 351 (430)
+. + +.+.+||+.+..
T Consensus 558 G~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 558 GGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CBCTTSSCBCCEEEEEEECTTC
T ss_pred CcCCCCCeeeCcEEEEEccCCc
Confidence 65 2 458888887766
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=4 Score=40.08 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=96.5
Q ss_pred cCCCEEE-EEe----CCeEEEEEcCCCccc-cc-C-----CCCceeeeeEEEE--cCCceEEEecC------CeEEEEEC
Q 014104 161 FDESKIV-GLI----GTRICIWRRNGLRSV-FP-S-----REGTFMKGLCMRY--FDPEAVVGCED------GTARVFDM 220 (430)
Q Consensus 161 ~~~~~l~-~~~----~~~i~vwd~~~~~~~-~~-~-----~~~~~~~~~~~~~--~~~~l~~~~~d------g~i~vwd~ 220 (430)
.++..++ |+. -..+.+||..+.+-. .. . .........+... .+..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 4555555 443 256888998876521 11 1 1111111122233 33346666643 35788998
Q ss_pred CCCeee--EEeecCCCCeEEEEecCCCEEEEEeCCC--eEEEEeCCCCceeEEEe---cC-CCCCeEEEEEecC-CCEEE
Q 014104 221 YSRKCS--QIIRMHCAPVTSLSLSEDQLIISGSSLG--SIAISGLSSDQRVATLR---ST-DCTGIKTLCYNPC-SRLVF 291 (430)
Q Consensus 221 ~~~~~~--~~~~~~~~~i~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~---~~-~~~~v~~~~~~~~-~~~l~ 291 (430)
.+.+-. ..+......-.++.+..+.+++.|+.++ .+.+||..+.+-...-. .. ......++.+..+ ++.++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 775422 2222111222233333567788887654 79999998765432211 00 1112334555555 66777
Q ss_pred EEeC--C-----CeEEEEeCCCCce-----eeeeec---CCCceEEEEEeeCCCCeEEEEcC--------CCeEEEEEcC
Q 014104 292 AGTT--A-----GYASCWDLRTMKS-----LWETRI---SPNVVYSLQHLQNDTSTLVVGGI--------DGVLRVLDQN 348 (430)
Q Consensus 292 ~~~~--d-----g~i~i~d~~~~~~-----~~~~~~---~~~~v~~l~~~s~~~~~l~s~~~--------dg~i~vwd~~ 348 (430)
.|+. + ..+.+||+.+.+- -..+.. ....-.++. ...+++.++.|+. ...|.+||+.
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 4589999987761 111111 110111222 2223677777764 3458888887
Q ss_pred CCce
Q 014104 349 TGEV 352 (430)
Q Consensus 349 ~~~~ 352 (430)
+.+-
T Consensus 635 t~~W 638 (695)
T 2zwa_A 635 SETL 638 (695)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 6643
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=93.96 E-value=4.2 Score=38.23 Aligned_cols=84 Identities=6% Similarity=-0.031 Sum_probs=58.2
Q ss_pred CCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCce-------------eeeeecCCCceEEEEEeeCCCCeEEEEcCCCe
Q 014104 276 TGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKS-------------LWETRISPNVVYSLQHLQNDTSTLVVGGIDGV 341 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~-------------~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~ 341 (430)
.....+.++|||+++++++ -+.++.++|++.... ..+.+.. -.....+ |.++|....|---|..
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~-Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTT-FDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEE-ECSSSEEEEEETTTTE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEE-ECCCCceEeeeeecce
Confidence 3567789999999988765 477899999985211 2233322 2344556 9999965566668999
Q ss_pred EEEEEcCCC----------ceEEEEEeccC
Q 014104 342 LRVLDQNTG----------EVLSRCVMDIG 361 (430)
Q Consensus 342 i~vwd~~~~----------~~~~~~~~~~~ 361 (430)
|.-|++... ..+..+..|-+
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~Yq 430 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ 430 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSC
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccC
Confidence 999999753 46777776544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=3.7 Score=36.43 Aligned_cols=230 Identities=10% Similarity=-0.051 Sum_probs=120.6
Q ss_pred CEeEEEEeccccceeEEEe-cCCeEEEEeCCCeEEEEecCCCe-eEEeee----cCCceeEEEEecC---CCEEE-EEe-
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRGLILTGVGDKVMRLWSLEGYK-CVEEYS----LPNAASLVDFDFD---ESKIV-GLI- 170 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~----~~~~~~~~~~~~~---~~~l~-~~~- 170 (430)
...+..+...-.....+++ +++.|+.+..+|.|.++|. +++ .+..+. ......-++++|+ +..|+ +..
T Consensus 18 ~~~~~~va~~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 18 KFKISEVASDLEVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp CEEEEEEECSCSCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CeEEEEEeCCCCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 3455566554455678888 6777777788899999974 444 222221 2244566899997 55554 433
Q ss_pred ---C----CeEEEEEcCCC------c-cccc---CCCCceeeeeEEEEcCCceEEEec-------------CCeEEEEEC
Q 014104 171 ---G----TRICIWRRNGL------R-SVFP---SREGTFMKGLCMRYFDPEAVVGCE-------------DGTARVFDM 220 (430)
Q Consensus 171 ---~----~~i~vwd~~~~------~-~~~~---~~~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~vwd~ 220 (430)
+ +.|..++.+.. . .++. ....|....+.+.+++..+++.+. .|.|.-++.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~ 176 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDE 176 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECT
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcC
Confidence 2 56778887654 1 1111 111222333555555543333221 245655555
Q ss_pred CCCe----------eeEEeecCCCCeEEEEecC-CCEEEEEeCCC----eEEEEeCCC--------C--------ceeEE
Q 014104 221 YSRK----------CSQIIRMHCAPVTSLSLSE-DQLIISGSSLG----SIAISGLSS--------D--------QRVAT 269 (430)
Q Consensus 221 ~~~~----------~~~~~~~~~~~i~~~~~~~-~~~l~~~~~dg----~i~vwd~~~--------~--------~~~~~ 269 (430)
. ++ .+. ..++. ....++|+| +..|.++.... .|.+..... + .++..
T Consensus 177 d-G~~p~~npf~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~ 253 (354)
T 3a9g_A 177 E-GRPPADNPFPNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVID 253 (354)
T ss_dssp T-SCCCTTSSSTTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred C-CCCCCCCCCCCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEee
Confidence 3 22 111 12232 245788887 44444433221 233322100 0 12222
Q ss_pred EecCCCCCeEEEEEe-------cCCCEEEEEeCCCeEEEEeCCCC-cee--eeee-cCCCceEEEEEeeCCCCeEEEEc
Q 014104 270 LRSTDCTGIKTLCYN-------PCSRLVFAGTTAGYASCWDLRTM-KSL--WETR-ISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 270 ~~~~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~-~~~--~~~~-~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+.. .......++|. .+|.++++....+.|...++... +.. ..+. .....+..++ +.|||.+.++..
T Consensus 254 ~~~-~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~-~~pDG~lyv~~~ 330 (354)
T 3a9g_A 254 TGS-ETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVV-IDDDGGILISTS 330 (354)
T ss_dssp CTT-CCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEE-ECTTSCEEEEEC
T ss_pred cCC-CCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEE-ECCCCcEEEEEe
Confidence 211 22357788883 56777777667778888888753 222 1222 2235678888 889887665553
|
| >4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.078 Score=36.46 Aligned_cols=67 Identities=10% Similarity=-0.055 Sum_probs=38.7
Q ss_pred CCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhcCC-CCCCCCchHHHHHHHHcccc
Q 014104 26 SLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGF-SNTSGSSMRLHLEELAMKHH 94 (430)
Q Consensus 26 ~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 94 (430)
..|++++.-||...+|..|.+....|.. .+-..+.||+.+|.+.++. .+....+|+..+..+.....
T Consensus 12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~--L~~dTdeLWk~~c~rdF~~~~p~e~esWRelY~rl~~ere 79 (97)
T 4hfx_A 12 GVPYSVLEPVLERCTPDQLYRIEEYNHV--LIEETDQLWKVHCHRDFKEERPEEYESWREMYLRLQDARE 79 (97)
T ss_dssp --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSCCCSSSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHccCCHHHHHHHHHhCcc--cchhhHHHHHHHHHhHCcccCCCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999988763 3445689999999999864 34477778877766655443
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=1.5 Score=35.84 Aligned_cols=106 Identities=8% Similarity=-0.082 Sum_probs=64.1
Q ss_pred CCeEEEEecCCCEEEEEeCCCeEEEEeCCCCce------eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQR------VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM 307 (430)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 307 (430)
..+..++|+|+..|.+. .+|.+.-.+..+... -..+-..--....++.|+|+|.+.++ .||.|+-++..+.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 36779999998556666 778877777655221 12221101112578999999987777 5699988876432
Q ss_pred ceee-----ee--ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEE
Q 014104 308 KSLW-----ET--RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVL 345 (430)
Q Consensus 308 ~~~~-----~~--~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vw 345 (430)
..-. +. ...-..+..+. +.|+|.+-+.. |+.++-+
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lf-f~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLF-FHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEE-ECTTSCEEEEE--TTEEEEE
T ss_pred CCCceeccccEeccCCCCceEEEE-ECCCceEEEEe--CCcEEec
Confidence 1110 11 11114567776 99999866655 7775433
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.44 E-value=4.6 Score=34.43 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=106.7
Q ss_pred eeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCC
Q 014104 196 GLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 275 (430)
+..+.......+.-. ||.|..|-....-.+..-......|..++......++. . ||.|..|-....-.+.. +....
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n~~Gqlg~-P~~~~ 101 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGNEDGQTTV-PAEAR 101 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECCTTSTTCC-CGGGS
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCCCCCCCCC-CcccC
Confidence 344444444433335 99999997543221111111223577777765545555 4 89999998653222111 11123
Q ss_pred CCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC-Cc---
Q 014104 276 TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT-GE--- 351 (430)
Q Consensus 276 ~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~-~~--- 351 (430)
..|..++... .+.+.-. ||.|+.|-....-.+..-......|..++ .. ....+.-. ||.|+.|-... ++
T Consensus 102 ~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~-~G--~~~~~~l~-~G~v~~wG~n~~gqlg~ 174 (282)
T 3qhy_B 102 SGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD-GG--VYTALAVK-NGGVIAWGDNYFGQTTV 174 (282)
T ss_dssp SSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE-EC--SSEEEEEE-TTEEEEEECCTTSTTSC
T ss_pred CCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE-cc--cCEEEEEE-CCEEEEecCCCCCCCCC
Confidence 3677777654 3444445 89999997654221211111224566665 32 22333334 79999996543 11
Q ss_pred ------eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecC
Q 014104 352 ------VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNY 425 (430)
Q Consensus 352 ------~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~ 425 (430)
.+..+..... ..++- .||.++.|-......-. .+..-...|..|+......+.-. ||.|..|-...
T Consensus 175 p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg----~p~~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 175 PAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTT----VPTEALSGVSAIASGEWYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp CGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTC----CCGGGGSSCCEEEECSSCEEEEE-TTEEEEESTTC
T ss_pred ceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCC----CCcccCCCceEEEcCCCEEEEEE-CCEEEEecCCC
Confidence 2333332222 22223 57888766433221110 00011236888888655544445 99999996543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=11 Score=33.19 Aligned_cols=139 Identities=10% Similarity=-0.024 Sum_probs=71.4
Q ss_pred CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC-----CCCceeeeeEEEEc---CCceEEEec----C----CeE
Q 014104 152 NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS-----REGTFMKGLCMRYF---DPEAVVGCE----D----GTA 215 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~l~~~~~----d----g~i 215 (430)
.....+++.++++.+++..++.|.+++.+.. ..+.. ........+++.+. +..|+++.. + ..|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 4567789999999777888899999974433 22111 11111223344333 234555443 2 567
Q ss_pred EEEECCCC-------eee-EEeecC-CCCeEEEEecCC-CEEEEEeC-------------CCeEEEEeCCCCc-------
Q 014104 216 RVFDMYSR-------KCS-QIIRMH-CAPVTSLSLSED-QLIISGSS-------------LGSIAISGLSSDQ------- 265 (430)
Q Consensus 216 ~vwd~~~~-------~~~-~~~~~~-~~~i~~~~~~~~-~~l~~~~~-------------dg~i~vwd~~~~~------- 265 (430)
..++.... +.+ ..+... ......++|.|+ .+.++.+. .|.|.-+|.. ++
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCCC
Confidence 77776543 111 112211 112356889877 44443222 2466666654 22
Q ss_pred -eeEEEecCCCCCeEEEEEec-CCCEEEEE
Q 014104 266 -RVATLRSTDCTGIKTLCYNP-CSRLVFAG 293 (430)
Q Consensus 266 -~~~~~~~~~~~~v~~~~~~~-~~~~l~~~ 293 (430)
....+...+. ....++|+| +|+++++-
T Consensus 187 ~~~~i~a~G~r-np~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 187 PNSPIWSYGHR-NPQGIDWHRASGVMVATE 215 (354)
T ss_dssp TTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred CCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence 0111211132 456899999 66655543
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=87.88 E-value=14 Score=32.64 Aligned_cols=234 Identities=12% Similarity=0.038 Sum_probs=120.2
Q ss_pred eEEEEeccccceeEEEe-cCCe-EEEEeCCCeEEEEecCCCeeEEeee--------cCCceeEEEEecC---CCEEE-EE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRGL-ILTGVGDKVMRLWSLEGYKCVEEYS--------LPNAASLVDFDFD---ESKIV-GL 169 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~l~-~~ 169 (430)
.+..+...-.....++| ++|. ++.+...|.|++++... .....+. .......++++|+ +..|. +.
T Consensus 9 ~~~~va~~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 9 NVEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp EEEEEEEEESSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred EEEEEECCCCCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 33344333345578888 6676 88888899999998543 3221111 1234456899985 55554 32
Q ss_pred -e-------CCeEEEEEcCCC-------cccccCC-----CCceeeeeEEEEcCCceEEEec-------------CCeEE
Q 014104 170 -I-------GTRICIWRRNGL-------RSVFPSR-----EGTFMKGLCMRYFDPEAVVGCE-------------DGTAR 216 (430)
Q Consensus 170 -~-------~~~i~vwd~~~~-------~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~-------------dg~i~ 216 (430)
. ...|..++.+.. +.++... ..|....+.+.+++...++.+. .|.|.
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ 167 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLV 167 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEE
T ss_pred eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEE
Confidence 2 235666766532 1122111 1233344566555533333222 24677
Q ss_pred EEECCCCe------------eeEEe-ecCCCCeEEEEecC-CCEEEEEeCC--CeEEEEeCCCCc---------------
Q 014104 217 VFDMYSRK------------CSQII-RMHCAPVTSLSLSE-DQLIISGSSL--GSIAISGLSSDQ--------------- 265 (430)
Q Consensus 217 vwd~~~~~------------~~~~~-~~~~~~i~~~~~~~-~~~l~~~~~d--g~i~vwd~~~~~--------------- 265 (430)
-+|....- ....+ .++ .....++|+| +..|.++... +.=.|.-+..+.
T Consensus 168 ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~ 246 (353)
T 2g8s_A 168 RLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSG 246 (353)
T ss_dssp EEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTS
T ss_pred EECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCC
Confidence 77764220 11111 122 2357888987 5555554322 111222221111
Q ss_pred ----------------eeEEEecCCCCCeEEEEEec-------CCCEEEEEeCCCeEEEEeCCCCceeee--e-ecCCCc
Q 014104 266 ----------------RVATLRSTDCTGIKTLCYNP-------CSRLVFAGTTAGYASCWDLRTMKSLWE--T-RISPNV 319 (430)
Q Consensus 266 ----------------~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~--~-~~~~~~ 319 (430)
++..+. +...+..+.|.+ +|+++++....+.|...++..++.... + ......
T Consensus 247 ~~~~~~~~~~~~~~~~P~~~~~--~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~r 324 (353)
T 2g8s_A 247 FKIPEAKGEIVAGTEQPVFYWK--DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQR 324 (353)
T ss_dssp SCCTTCCBSSCTTSCCCSEEES--SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCC
T ss_pred CccCcccCCCCCCccCCeEEeC--CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCc
Confidence 111222 223567788863 466777776778888888876544322 1 122346
Q ss_pred eEEEEEeeCCCCeEEEEc-CCCeE
Q 014104 320 VYSLQHLQNDTSTLVVGG-IDGVL 342 (430)
Q Consensus 320 v~~l~~~s~~~~~l~s~~-~dg~i 342 (430)
+..++ +.|||.+.++.. .+|.|
T Consensus 325 p~~v~-~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 325 IRDVR-TGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEEEE-ECTTSCEEEEECSTTEEE
T ss_pred eeEEE-ECCCCcEEEEEeCCCCEE
Confidence 88888 899998655433 34433
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=87.82 E-value=12 Score=31.84 Aligned_cols=219 Identities=11% Similarity=-0.006 Sum_probs=106.7
Q ss_pred ceeEEEecCC-eEEEEeCCCeEEEEecCCC-eeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc-ccCCC
Q 014104 114 GVDQCRMKRG-LILTGVGDKVMRLWSLEGY-KCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV-FPSRE 190 (430)
Q Consensus 114 ~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~-~~~~~ 190 (430)
.|..++.-.. .++. . ||.|..|-.... ++-........+..++.. ....++-.+|.+..|-.+..-++ .....
T Consensus 25 ~i~~ia~G~~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G--~~hs~~l~~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLALKDGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp SCCEEEECSSEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEEC--SSEEEEEETTEEEEEECCTTSTTCCCGGG
T ss_pred CCcEEEeCCCeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeC--CCEEEEEECCEEEEeeCCCCCCCCCCccc
Confidence 4666666444 3333 4 899999965432 211101111222233332 33333114899999987643211 11100
Q ss_pred CceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEE
Q 014104 191 GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATL 270 (430)
Q Consensus 191 ~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 270 (430)
. ..+..+.......+.-. ||.|+.|-....-.+..-......|..++......++. . ||.|..|-......+. .
T Consensus 101 ~--~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n~~gqlg-~ 174 (282)
T 3qhy_B 101 R--SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDNYFGQTT-V 174 (282)
T ss_dssp S--SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECCTTSTTS-C
T ss_pred C--CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCCCCCCCC-C
Confidence 1 12344555555544445 99999997543221111111234577776654433443 3 7999999765422211 1
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 271 RSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 271 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+......|..++... .+.+.- .||.|+.|-....-.+..-......|..++ ... ...+.-. ||.|+.|-...
T Consensus 175 p~~~~~~v~~i~~G~--~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~-~G~--~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 175 PAEAQSGVDDVAGGI--FHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIA-SGE--WYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp CGGGGSSEEEEEECS--SEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEE-ECS--SCEEEEE-TTEEEEESTTC
T ss_pred ceecCCCeEEEEecC--CEEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEE-cCC--CEEEEEE-CCEEEEecCCC
Confidence 111223577776643 333333 589999997654221111111123466665 333 2233333 89999996553
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=87.81 E-value=17 Score=33.50 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=34.7
Q ss_pred CCeEEEEecC----CCEEEEEeC-------------CCeEEEEeCCCC-------ceeE-EEecCCCCCeEEEEEecCCC
Q 014104 234 APVTSLSLSE----DQLIISGSS-------------LGSIAISGLSSD-------QRVA-TLRSTDCTGIKTLCYNPCSR 288 (430)
Q Consensus 234 ~~i~~~~~~~----~~~l~~~~~-------------dg~i~vwd~~~~-------~~~~-~~~~~~~~~v~~~~~~~~~~ 288 (430)
.....|+++| +..|+.+.. ...|.-++...+ +.+. .+..........|+|.|+|.
T Consensus 77 ~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~ 156 (454)
T 1cru_A 77 NGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK 156 (454)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC
T ss_pred CceeEEEECCCcCcCCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe
Confidence 4567899997 455544432 235666655322 1111 22221123578999999998
Q ss_pred EEEEEe
Q 014104 289 LVFAGT 294 (430)
Q Consensus 289 ~l~~~~ 294 (430)
+.++.+
T Consensus 157 Lyv~~G 162 (454)
T 1cru_A 157 IYYTIG 162 (454)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 777654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=86.92 E-value=19 Score=33.15 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=58.8
Q ss_pred CCeEEEEecCCCEEEEEeCCC-eEEEEeCCCCcee--EEEecC-----CCCCeEEEEEecC---CCEEEEEeC-------
Q 014104 234 APVTSLSLSEDQLIISGSSLG-SIAISGLSSDQRV--ATLRST-----DCTGIKTLCYNPC---SRLVFAGTT------- 295 (430)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~--~~~~~~-----~~~~v~~~~~~~~---~~~l~~~~~------- 295 (430)
...+.|+|.|+..++.+...+ .|++++..+++.. ..+... .......|+|+|+ +..|+....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 456799999874455555554 7998887655432 222211 2346789999995 555554432
Q ss_pred ------CCeEEEEeCCCC-------ceeee-eec-CCCceEEEEEeeCCCCeEEEEc
Q 014104 296 ------AGYASCWDLRTM-------KSLWE-TRI-SPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 296 ------dg~i~i~d~~~~-------~~~~~-~~~-~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
...|.-|+...+ +.+.. +.. .......|+ |.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~-f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLV-IGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEE-ECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEe-ECCCCeEEEEEC
Confidence 234666655321 11211 221 113467788 999998777654
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=85.32 E-value=18 Score=31.50 Aligned_cols=180 Identities=11% Similarity=0.050 Sum_probs=97.4
Q ss_pred eEEEEeCCCeEEEEecCCCe-------eEE--eeecCCceeEEEEecCCCEEE-EEeCCeEEEEEc---CC------Ccc
Q 014104 124 LILTGVGDKVMRLWSLEGYK-------CVE--EYSLPNAASLVDFDFDESKIV-GLIGTRICIWRR---NG------LRS 184 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~---~~------~~~ 184 (430)
.+++.+.+|.|+--.+.+.+ -+. .++..+....+......+.++ .+..|.++-... .. +..
T Consensus 5 v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~ 84 (327)
T 3uc1_A 5 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQH 84 (327)
T ss_dssp EEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEE
T ss_pred EEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEE
Confidence 66777788888765433211 111 112222233333333444444 777777665553 21 221
Q ss_pred ---cccCC-CCceeeeeEEEEc--CCceEEEecCCeEEEEECCCC-------eeeEEeecCCCCeEEEEec-CCCEEEEE
Q 014104 185 ---VFPSR-EGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSR-------KCSQIIRMHCAPVTSLSLS-EDQLIISG 250 (430)
Q Consensus 185 ---~~~~~-~~~~~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~-------~~~~~~~~~~~~i~~~~~~-~~~~l~~~ 250 (430)
.+... ...+..++.+..+ .+.++..+.+|.++--.+..- .....++. .+.+..+... ..+.++..
T Consensus 85 i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~ 163 (327)
T 3uc1_A 85 VANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLV 163 (327)
T ss_dssp HHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEE
T ss_pred HHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEE
Confidence 12222 2233333333322 345999999999998876432 22223333 3445444444 44678888
Q ss_pred eCCCeEEEEeCC--C---------CceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 251 SSLGSIAISGLS--S---------DQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT 306 (430)
Q Consensus 251 ~~dg~i~vwd~~--~---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 306 (430)
+..|.+..+... . |.....+. ....|.++...+.+..++..+..|.++.-.+..
T Consensus 164 T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~--~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 164 SANGQSIRFSATDEALRPMGRATSGVQGMRFN--IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp ETTSEEEEEECCTTTSCCCCTTSBCEESSCCC--TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred ECCCeEEEEECcccccCcCCcCCCCeeeecCC--CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 889998888766 2 11112222 344677776666667888999999998887653
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=84.11 E-value=15 Score=37.62 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=34.1
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
..+.+++ ..++..++++-+.|+++|+|++.+++++.+...
T Consensus 236 ~~~~~~~-~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMI-FLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEE-EETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEe-ecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3466666 777888999999999999999999999988764
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=82.41 E-value=10 Score=35.69 Aligned_cols=113 Identities=11% Similarity=0.007 Sum_probs=69.3
Q ss_pred CeEEEEecCC-CEEEE-EeCCCeEEEEeCCCC------ce-------eEEEecCCCCCeEEEEEecCCCEEEEEeCCCeE
Q 014104 235 PVTSLSLSED-QLIIS-GSSLGSIAISGLSSD------QR-------VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYA 299 (430)
Q Consensus 235 ~i~~~~~~~~-~~l~~-~~~dg~i~vwd~~~~------~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 299 (430)
....+.++|+ .+++. |-.+.++.++|++.- +. ....+ ..-.....+|+++|+...+-.-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCCceEeeeeecceE
Confidence 3456778876 55444 456789999998741 11 22222 34478889999999544455689999
Q ss_pred EEEeCCCC----------ceeeeeecCCCceEEEE----EeeCCCCeEEEEc---CCCe----------EEEEEcCC
Q 014104 300 SCWDLRTM----------KSLWETRISPNVVYSLQ----HLQNDTSTLVVGG---IDGV----------LRVLDQNT 349 (430)
Q Consensus 300 ~i~d~~~~----------~~~~~~~~~~~~v~~l~----~~s~~~~~l~s~~---~dg~----------i~vwd~~~ 349 (430)
.-|++... ..+..+..|-.+--..+ .-.|+|++|++.. .|.. -.+.|+..
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 99998753 33444554432211111 1357888888875 3433 36777763
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=82.21 E-value=14 Score=37.67 Aligned_cols=38 Identities=11% Similarity=0.025 Sum_probs=32.9
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56777888888899999999999999999998887643
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=82.11 E-value=27 Score=31.10 Aligned_cols=134 Identities=7% Similarity=0.040 Sum_probs=80.3
Q ss_pred eEEEEECCCC--eeeEEeecC------CCCeEEEEec---C-----CCEEEEE-eCCCeEEEEeCCCCceeEEEec---C
Q 014104 214 TARVFDMYSR--KCSQIIRMH------CAPVTSLSLS---E-----DQLIISG-SSLGSIAISGLSSDQRVATLRS---T 273 (430)
Q Consensus 214 ~i~vwd~~~~--~~~~~~~~~------~~~i~~~~~~---~-----~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~---~ 273 (430)
.|.+||+.++ +.++.+.-. ...+..+.+. + +.+++.+ +..+.|.|+|+.+++.-+.+.. .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778999998 888777532 2356777776 2 2333333 3567899999999877655421 0
Q ss_pred C--------------CCCeEEEEEecC----CCEEEEEeCCCeEEEEeCCC-----Cceee--eeecCC---CceEEEEE
Q 014104 274 D--------------CTGIKTLCYNPC----SRLVFAGTTAGYASCWDLRT-----MKSLW--ETRISP---NVVYSLQH 325 (430)
Q Consensus 274 ~--------------~~~v~~~~~~~~----~~~l~~~~~dg~i~i~d~~~-----~~~~~--~~~~~~---~~v~~l~~ 325 (430)
. ...+..++++|+ ++.|.-..-.+ -++|.+.+ ..... +..+.. ..-..++
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~- 281 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALA- 281 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEE-
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEE-
Confidence 0 136888899987 67776554443 23444332 11111 111222 2223344
Q ss_pred ee-CCCCeEEEEcCCCeEEEEEcCC
Q 014104 326 LQ-NDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 326 ~s-~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
+. .+|...++--..+.|..|+..+
T Consensus 282 ~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 282 YDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp ECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EeCCCCeEEEEeccCCeEEEEeCCC
Confidence 64 5677777777889999999874
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=80.90 E-value=26 Score=30.06 Aligned_cols=205 Identities=9% Similarity=0.020 Sum_probs=110.2
Q ss_pred ecCCeEEEEe--CCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC--------------CeEEEEEcCCC
Q 014104 120 MKRGLILTGV--GDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG--------------TRICIWRRNGL 182 (430)
Q Consensus 120 ~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~--------------~~i~vwd~~~~ 182 (430)
+.+++++-.. .++.|...+.+.... ..+.. ..+.-++++++.|+ +... ..|+..++++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~---~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN---DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE---EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC---CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 3455444332 345666666554332 22221 12345688999988 4432 46788888877
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEe----cCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-CCEEEEEe-CCCeE
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGC----EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-DQLIISGS-SLGSI 256 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~l~~~~-~dg~i 256 (430)
+........ ...+.+.+..|+-.. .+..|...++... ....+..+.. ..+++ ++.|+-.+ ....|
T Consensus 99 ~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 99 GSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp CCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred cceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence 633222111 135566777766554 3456777777543 3344443332 23343 34444444 46788
Q ss_pred EEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCC--CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEE
Q 014104 257 AISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTA--GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV 334 (430)
Q Consensus 257 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~ 334 (430)
.+-++..+.....+.+ .. ...+.|++.+|+-...+ ..|..-++.... ...+.. ..+. +++|++.+|+
T Consensus 170 y~~~l~g~~~~~l~~~----~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~~---~~~~~g~~Iy 238 (302)
T 3s25_A 170 YRYDTASQSEALFYDC----NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANIE---HYNVYGSLIF 238 (302)
T ss_dssp EEEETTTTEEEEEECS----CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCEE---EEEEETTEEE
T ss_pred EEEECCCCCEEEEeCC----Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCcc---eEEECCCEEE
Confidence 8889876554433331 22 23467999988865443 367777776443 333332 2232 3678888887
Q ss_pred EEc--CCCeEEEEEcC
Q 014104 335 VGG--IDGVLRVLDQN 348 (430)
Q Consensus 335 s~~--~dg~i~vwd~~ 348 (430)
-++ ..+.|..-++.
T Consensus 239 ~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 239 YQRGGDNPALCVVKND 254 (302)
T ss_dssp EEECSSSCEEEEEETT
T ss_pred EEECCCCcEEEEEECC
Confidence 653 23566666665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 430 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 7e-10 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 6e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.001 | |
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-04 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 3e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-05 | |
| d1p22a1 | 118 | a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b | 5e-05 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 9e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 4e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 6e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.001 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 0.001 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 0.001 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.003 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.004 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.004 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 69.8 bits (169), Expect = 8e-14
Identities = 28/177 (15%), Positives = 61/177 (34%), Gaps = 3/177 (1%)
Query: 172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM 231
T G ++ + + L + V G D +A+++D+ C Q
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 232 HCAPVTSLSLSED-QLIISGSSLGSIAI-SGLSSDQRVATLRSTDCTGIKTLCYNPCSRL 289
H + + ++ + +GS + + + + + GI ++ ++ RL
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 290 VFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346
+ AG + WD N V L + +D + G D L++ +
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG-VTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.0 bits (154), Expect = 7e-12
Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 6/158 (3%)
Query: 107 QWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESK 165
V L ++G D +LW + C + ++ + + + F + +
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 166 IV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEA---VVGCEDGTARVFDMY 221
G ++ + + + G+ F + G +D V+D
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 222 SRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258
+ ++ H V+ L +++D + +GS + I
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.9 bits (146), Expect = 7e-11
Identities = 35/253 (13%), Positives = 77/253 (30%), Gaps = 24/253 (9%)
Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183
++++ D +++W E + K++ + I +
Sbjct: 31 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 90
Query: 184 SVFPSREGTFMKGLCMRYFDPEA---VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240
+ P V D T +++++ + C + H V +
Sbjct: 91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150
Query: 241 LSED-QLIISGSSLGSIAISGLSSDQRVATLR-------------------STDCTGIKT 280
++D LI S S+ ++ + +++ + A LR ++ TG +T
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 210
Query: 281 LCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDG 340
+ +G+ WD+ T L N V + ++ D
Sbjct: 211 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK-FILSCADDK 269
Query: 341 VLRVLDQNTGEVL 353
LRV D +
Sbjct: 270 TLRVWDYKNKRCM 282
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 59.4 bits (142), Expect = 2e-10
Identities = 34/292 (11%), Positives = 91/292 (31%), Gaps = 25/292 (8%)
Query: 16 RSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFS 75
+ T++ + + F G + + + + + S
Sbjct: 47 ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSS 106
Query: 76 NTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG--LILTGVGDKV 133
+ + + K + + + + H V R + LI + D+
Sbjct: 107 VSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 166
Query: 134 MRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGT 192
+R+W + +C E + + + + + I G + + G
Sbjct: 167 VRVWVVATKECKAELREHRHVVECISWAPE--------SSYSSISEATGSETKKSGKPGP 218
Query: 193 FMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS 251
F+ G D T +++D+ + C + H V + + I+S +
Sbjct: 219 FLL------------SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 252 SLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303
++ + + + + TL + + + +L ++ + V G+ W+
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAHEHF-VTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.3 bits (134), Expect = 2e-09
Identities = 34/226 (15%), Positives = 75/226 (33%), Gaps = 31/226 (13%)
Query: 142 YKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRY 201
+ +PN +V D++ + + T C+ G R
Sbjct: 102 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--------RPNQ 153
Query: 202 FDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED----------------- 244
D T RV+ + +++C +R H V +S + +
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Query: 245 ----QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300
++SGS +I + +S+ + TL D ++ + ++ + + +
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD-NWVRGVLFHSGGKFILSCADDKTLR 272
Query: 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346
WD + + + + V SL +V G +D ++V +
Sbjct: 273 VWDYKNKRCMKTLNAHEHFVTSLD-FHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.4 bits (98), Expect = 6e-05
Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 1/149 (0%)
Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR 266
V ED T +V+D + + ++ H V +S +++ S
Sbjct: 33 VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE 92
Query: 267 VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHL 326
+ ++ P + + + W+++T + T +
Sbjct: 93 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRP 151
Query: 327 QNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355
D + + D +RV T E +
Sbjct: 152 NQDGTLIASCSNDQTVRVWVVATKECKAE 180
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (138), Expect = 7e-10
Identities = 50/279 (17%), Positives = 103/279 (36%), Gaps = 7/279 (2%)
Query: 108 WKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV 167
H+ GV +M+ +I++G D+ +++W+ E +C+ + ++ +
Sbjct: 53 LVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS 112
Query: 168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ 227
G + +W G C++Y V G D +V+D + C
Sbjct: 113 GSRDATLRVWDIET-GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH 171
Query: 228 IIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS 287
++ H V SL ++SGS SI + + + + TL T
Sbjct: 172 TLQGHTNRVYSLQFD-GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL---TSGMELKD 227
Query: 288 RLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347
++ +G WD++T + L + ++ LQ + + ++ DG +++ D
Sbjct: 228 NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287
Query: 348 NTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386
TGE + + + S V + N + G
Sbjct: 288 KTGEFIRN--LVTLESGGSGGVVWRIRASNTKLVCAVGS 324
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 8e-08
Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 8/235 (3%)
Query: 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR 183
I++G D +++WS KC+ + ++ I+ R
Sbjct: 29 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG-VWSSQMRDNIIISGSTDRTLKVWNAETG 87
Query: 184 SVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE 243
+ G CM + V G D T RV+D+ + +C ++ H A V +
Sbjct: 88 ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 147
Query: 244 DQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWD 303
+++ + + ++ + TL+ V +G+ WD
Sbjct: 148 RRVVSGAYD-FMVKVWDPETETCLHTLQGHTNRVY---SLQFDGIHVVSGSLDTSIRVWD 203
Query: 304 LRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358
+ T + ++ ++ + LV G D +++ D TG+ L
Sbjct: 204 VETGNCIHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDIKTGQCLQTLQG 255
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 8e-04
Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 11/223 (4%)
Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR 266
V G +D T +V+ + KC + + H V S + ++ +I + + + +
Sbjct: 31 VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISG----STDRTLKVWNAET 86
Query: 267 VATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHL 326
+ + C + + V +G+ WD+ T + L V + +
Sbjct: 87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV---RCV 143
Query: 327 QNDTSTLVVGGIDGVLRVLDQNTGEVLSR----CVMDIGSASSSSNKVSGVIERNEGRRL 382
Q D +V G D +++V D T L + VSG ++ +
Sbjct: 144 QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWD 203
Query: 383 SAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNY 425
+ + + + +V+ + +++W
Sbjct: 204 VETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 246
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.2 bits (131), Expect = 6e-09
Identities = 31/197 (15%), Positives = 60/197 (30%), Gaps = 24/197 (12%)
Query: 172 TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC------ 225
T R G S+ S E G D RV+D +
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245
Query: 226 -SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDC-------- 275
++ H V S+ + D Q ++SGS S+ + L + + ++ +
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 276 ---TGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN---- 328
+ ++ + +G+ WD ++ L + N V S+
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365
Query: 329 -DTSTLVVGGIDGVLRV 344
+ + G D R+
Sbjct: 366 PEYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.2 bits (100), Expect = 4e-05
Identities = 44/285 (15%), Positives = 77/285 (27%), Gaps = 31/285 (10%)
Query: 5 RSSRRSPPPKKRSSKPRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLL 64
R S S K + ++ S + I + FS G F I NR ++
Sbjct: 98 RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 157
Query: 65 QLLYCKLHGFSNTSGSSMRLHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRG- 123
L + +S S + + R
Sbjct: 158 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 217
Query: 124 -LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL--------VDFDFDESKIV-GLIGTR 173
I G D+ +R+W E VE N + V F D +V G +
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS 277
Query: 174 ICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAV-------------VGCEDGTARVFDM 220
+ +W + S+ + V G +D +D
Sbjct: 278 VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337
Query: 221 YSRKCSQIIRMHCAPVTSLSLSED-------QLIISGSSLGSIAI 258
S +++ H V S++++ + +GS I
Sbjct: 338 KSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 6e-07
Identities = 52/319 (16%), Positives = 106/319 (33%), Gaps = 36/319 (11%)
Query: 105 IDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDES 164
I S GV + I++G+ D +++W +C + + S++ +DE
Sbjct: 8 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQYDER 66
Query: 165 KIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224
I+ + + L +R+ + V +D + V+DM S
Sbjct: 67 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126
Query: 225 CSQIIRMHCAPVTS--LSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLC 282
+ R+ + + +D+ I+S S +I + S+ + V TL C
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG---IAC 183
Query: 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVL 342
RLV +G++ WD+ L +V ++ D +V G DG +
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAYDGKI 240
Query: 343 RVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCL 402
+V D + + + + G + L
Sbjct: 241 KVWDLVAALDPR---------APAGTLCLRTLVEHSG------------------RVFRL 273
Query: 403 AVGMKKVVTTHNSKYIRLW 421
++V++ + I +W
Sbjct: 274 QFDEFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 3e-04
Identities = 41/247 (16%), Positives = 82/247 (33%), Gaps = 12/247 (4%)
Query: 108 WKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV 167
H+ V + +I+TG D +R+W + + + A L + +
Sbjct: 51 LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT 110
Query: 168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYF--DPEAVVGCEDGTARVFDMYSRKC 225
I +W + R + D V D T +V++ + +
Sbjct: 111 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170
Query: 226 SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP 285
+ + H + L D+L++SGSS +I + + + L + C
Sbjct: 171 VRTLNGHKRGIACLQYR-DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRF 226
Query: 286 CSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQH------LQNDTSTLVVGGID 339
++ + +G G WDL + + ++H LQ D +V D
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHD 286
Query: 340 GVLRVLD 346
+ + D
Sbjct: 287 DTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.001
Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 8/231 (3%)
Query: 198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIA 257
C++Y D + V G D T +++D + +C +I+ H V L E +I S
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRV 79
Query: 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317
+ + + + + + WD+ + + R+
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS----IAVWDMASPTDITLRRVLV 135
Query: 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE---VLSRCVMDIGSASSSSNKVSGVI 374
++ + D +V D ++V + +T E L+ I V
Sbjct: 136 GHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGS 195
Query: 375 ERNEGRRLSAGCC-IDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFN 424
N R C R+ + + C+ K++V+ I++W
Sbjct: 196 SDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (101), Expect = 1e-06
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 25 ESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKL 63
+SL +++ IFS L +L++ S VCK W + + L
Sbjct: 2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.6 bits (111), Expect = 1e-06
Identities = 17/120 (14%), Positives = 39/120 (32%), Gaps = 1/120 (0%)
Query: 207 VVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQR 266
+ G +D RV+D ++K + H V +L + +++SGS+ ++ + +
Sbjct: 27 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC 86
Query: 267 VATLRSTDCTGIKTLCYNPCSRLVFA-GTTAGYASCWDLRTMKSLWETRISPNVVYSLQH 325
+ T + G+ W L S+ + +
Sbjct: 87 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHT 146
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ-IIRMHCAPVTSLSLSEDQLIISGSSLGS 255
+ Y +V + ++++ S K I + S++ L+ + G
Sbjct: 287 ITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQ 346
Query: 256 IAI 258
+
Sbjct: 347 SFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 3e-04
Identities = 21/123 (17%), Positives = 36/123 (29%), Gaps = 1/123 (0%)
Query: 232 HCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF 291
H V + ED +I+G+ I + + + + L D G+ L Y LV
Sbjct: 11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHD-GGVWALKYAHGGILVS 69
Query: 292 AGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE 351
T + + + V + +V G D L V
Sbjct: 70 GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 352 VLS 354
+
Sbjct: 130 SVP 132
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.8 bits (95), Expect = 3e-05
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMR 83
I SL +I IF+ L F D++ V ++WN II + L F S
Sbjct: 6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENF--VSPKGFN 63
Query: 84 LHLEELAMKHHRFALEE 100
+L+ K+ + + ++
Sbjct: 64 SLNLKLSQKYPKLSQQD 80
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 4e-05
Identities = 18/159 (11%), Positives = 46/159 (28%), Gaps = 7/159 (4%)
Query: 207 VVGCEDGTARVFDMYSRKCSQIIRM--HCAPVTSLSLSED-QLIISGSSLGSIAI-SGLS 262
+ + +++ K Q+ + H VT + + D I++ + + + +
Sbjct: 23 AICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG 82
Query: 263 SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVY- 321
+ + + + + P + G+ + S W + +
Sbjct: 83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 142
Query: 322 --SLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358
++ L G D R+ EV R
Sbjct: 143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 181
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (94), Expect = 5e-05
Identities = 11/46 (23%), Positives = 15/46 (32%)
Query: 25 ESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCK 70
I I S L L VCK W + + L + L +
Sbjct: 16 ARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 9e-05
Identities = 9/72 (12%), Positives = 22/72 (30%)
Query: 24 IESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMR 83
I L ++ + S L DL++ + C+ W + L + + +
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRK 78
Query: 84 LHLEELAMKHHR 95
+ +
Sbjct: 79 VIKPGFIHSPWK 90
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 21/192 (10%), Positives = 52/192 (27%), Gaps = 9/192 (4%)
Query: 176 IWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235
++ + G + L +R ++ + + + S + +
Sbjct: 158 LYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFK 217
Query: 236 VTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295
+ L L + + + T +P
Sbjct: 218 DDKQDP------ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQ-IYGV 270
Query: 296 AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355
+ +DL+ K + + Y + L +GG L V + +T E +
Sbjct: 271 LNRLAKYDLKQRKLIK-AANLDHTYYCVA-FDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 328
Query: 356 CVMDIGSASSSS 367
+ G S+++
Sbjct: 329 IKLPGGDMSTTT 340
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 39.9 bits (92), Expect = 4e-04
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 297 GYASCWDLRTMKSLWETRI-SPNVVYSLQHLQNDTSTLVV--GGIDGVLRVLDQNTGEVL 353
G WD K+ W SP +L T+ VV G DG L TGE L
Sbjct: 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLT-----TAGNVVFQGTADGRLVAYHAATGEKL 511
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 4e-04
Identities = 23/237 (9%), Positives = 56/237 (23%), Gaps = 7/237 (2%)
Query: 28 NGDIICMIFSSLGFF----DLVRCSAVCKSWNAIINRCKLLQLLYCKLHGFSNTSGSSMR 83
+ I G ++ L + + + S +
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 84 LHLEELAMKHHRFALEEGRIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYK 143
+ + Q + TG D +R W L +
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 144 CVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRR-NGLRSVFPSREGTFMKGLCMRYF 202
++++ + + + + + + N + + L Y
Sbjct: 217 QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYC 276
Query: 203 DPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258
V +D + + + V S +S D + I++GS +
Sbjct: 277 GKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.002
Identities = 7/88 (7%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Query: 218 FDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCT 276
++ + +H + V SL + + +S + + + +
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-- 307
Query: 277 GIKTLCYNPCSRLVFAGTTAGYASCWDL 304
+ + + + + G+ A+ +++
Sbjct: 308 SVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 39.6 bits (91), Expect = 6e-04
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 292 AGTTAGYASCWDLRTMKSLWETRI-SPNVVYSLQHLQNDTSTLVV--GGIDGVLRVLDQN 348
A +G WD K+ W+ + +L T+ +V G G + +
Sbjct: 433 AAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLS-----TAGNLVFQGTAAGQMHAYSAD 487
Query: 349 TGEVL 353
GE L
Sbjct: 488 KGEAL 492
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.001
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 198 CMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVT----SLSLSEDQLIISGSSL 253
+ D T RV+D+ + KC Q + + + + + IIS S
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 254 GSIAI 258
G++
Sbjct: 318 GTLNF 322
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (87), Expect = 0.001
Identities = 10/85 (11%), Positives = 22/85 (25%), Gaps = 1/85 (1%)
Query: 175 CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHC 233
W + S + + G D ++ + K + + H
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 234 APVTSLSLSEDQLIISGSSLGSIAI 258
V +L ++S + I
Sbjct: 259 DGVNNLLWETPSTLVSSGADACIKR 283
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 38.4 bits (88), Expect = 0.001
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 297 GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV-VGGIDGVLRVLDQNTGEVLSR 355
G +DL T K+ W + LV +DG L+ LD G+ L
Sbjct: 444 GQIRAFDLTTGKAKWTK---WEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWN 500
Query: 356 CVMDIGSASSSS 367
+ S S
Sbjct: 501 --FKMPSGGIGS 510
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 38.4 bits (88), Expect = 0.001
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 16/64 (25%)
Query: 297 GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLV-------VGGIDGVLRVLDQNT 349
G D + K +WE + +HL L G DG + D +
Sbjct: 466 GSLRAMDPVSGKVVWEHK---------EHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKS 516
Query: 350 GEVL 353
G+ L
Sbjct: 517 GKEL 520
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.1 bits (84), Expect = 0.003
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 4/114 (3%)
Query: 242 SEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASC 301
+ + + L + + + NP F
Sbjct: 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF--GAYNVLES 264
Query: 302 WDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR 355
+DL S+ + P+ YS+ + D ST+ +GG G L D T E +
Sbjct: 265 FDLEKNASIKRVPL-PHSYYSVN-VSTDGSTVWLGGALGDLAAYDAETLEKKGQ 316
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.9 bits (83), Expect = 0.004
Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 1/89 (1%)
Query: 224 KCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLC 282
Q+ H +T+LS S D + + S + G I +S+ T I +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 283 YNPCSRLVFAGTTAGYASCWDLRTMKSLW 311
L +
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSS 91
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.004
Identities = 48/385 (12%), Positives = 105/385 (27%), Gaps = 76/385 (19%)
Query: 109 KAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSL-------------PNAAS 155
KAH + ++ GD +++W + +
Sbjct: 11 KAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70
Query: 156 LVDFDFDESKIVGLIGT--RICIWRRNGLRSVFPSREGTF----------------MKGL 197
++ D E +V + +R
Sbjct: 71 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130
Query: 198 CMRYFDPEAVVGCEDGTARVFDMYS-RKCSQIIRMHCAP-----------------VTSL 239
R V GT ++ + S + ++ +P TS+
Sbjct: 131 NDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190
Query: 240 SLSEDQLIISGSSLGSIAISGLSSDQRVATLR-----STDCTGIKTLCYNPCSRLVFAGT 294
+SE LI +G + G++ IS LS+ + + + I+++ ++P L+
Sbjct: 191 DISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 250
Query: 295 TAGYAS---CWDLRTMKSLWETRISPNVVYSLQHLQNDTS------------TLVVGGID 339
+ ++ + + + + + +S TL G D
Sbjct: 251 DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD 310
Query: 340 GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC--CIDRIPKTIRP 397
G LR D T E ++ + + G L+ + + K R
Sbjct: 311 GKLRFWDVKTKERITTLN---MHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 367
Query: 398 PITCLAVGMKKVVTTHNSKYIRLWK 422
+ + + IR ++
Sbjct: 368 GMGADLNES--LCCVCLDRSIRWFR 390
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 36.9 bits (84), Expect = 0.004
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 297 GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVL 353
G ++ T WE V + + G +DG L+ D +TG++L
Sbjct: 453 GQIKAYNAITGDYKWEKMERFAVWGGT--MATAGDLVFYGTLDGYLKARDSDTGDLL 507
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.98 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.92 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.85 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.84 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.8 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.78 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.76 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.72 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.66 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.55 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.53 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.47 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.42 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.39 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.36 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 99.3 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.22 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.2 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.15 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.13 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.07 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.01 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.0 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.96 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.94 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.91 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.89 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.82 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.74 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.7 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.65 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.58 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.58 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.54 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.52 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.52 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.51 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.48 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.46 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.43 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.38 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 98.33 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.3 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.24 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.05 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.02 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.01 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.98 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.98 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.66 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.52 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.37 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.33 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.99 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.91 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.88 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.67 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.49 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.72 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 95.27 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.26 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.6 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 94.27 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.94 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.69 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.22 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 90.97 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 90.29 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 86.99 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 85.67 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 85.37 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-41 Score=303.13 Aligned_cols=288 Identities=15% Similarity=0.206 Sum_probs=251.1
Q ss_pred hcccCCEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCC
Q 014104 97 ALEEGRIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGT 172 (430)
Q Consensus 97 ~~~~~~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~ 172 (430)
.|.+...+.++|+||.++|++++| +++ +|+||+.||+|+|||+.+++.+.++..| ..+..+++++++..++ +..++
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~ 81 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 81 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ccCCCCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccc
Confidence 355555666789999999999999 455 9999999999999999999999999876 5577899999999999 78889
Q ss_pred eEEEEEcCCCcccccCC-CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 173 RICIWRRNGLRSVFPSR-EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 173 ~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
.+.+|+........... .........+.+.++.+++++.|+.+++||+++++.+..+.+|...+.+++++++ .+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (317)
T d1vyhc1 82 TIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161 (317)
T ss_dssp CCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEE
Confidence 99999988766432221 1222344555566777999999999999999999999999999999999999976 899999
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCC--------------------CEEEEEeCCCeEEEEeCCCCcee
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCS--------------------RLVFAGTTAGYASCWDLRTMKSL 310 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------~~l~~~~~dg~i~i~d~~~~~~~ 310 (430)
+.|+.|++|++.+++....+.. +...+.++.|+|++ .++++++.|+.|++||+++++++
T Consensus 162 ~~d~~v~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 240 (317)
T d1vyhc1 162 SNDQTVRVWVVATKECKAELRE-HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240 (317)
T ss_dssp ETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred eCCCeEEEEeeccceeeEEEec-CCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEE
Confidence 9999999999999999999887 77889999988753 57899999999999999999999
Q ss_pred eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCccccc
Q 014104 311 WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDR 390 (430)
Q Consensus 311 ~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~ 390 (430)
.++.+|...|.+++ ++|++++|++|+.||.|++||+.+++++.++..|
T Consensus 241 ~~~~~~~~~v~~~~-~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h------------------------------- 288 (317)
T d1vyhc1 241 MTLVGHDNWVRGVL-FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH------------------------------- 288 (317)
T ss_dssp EEEECCSSCEEEEE-ECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC-------------------------------
T ss_pred EEEeCCCCCEEEEE-ECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC-------------------------------
Confidence 99999999999999 9999999999999999999999999999988764
Q ss_pred CCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEE
Q 014104 391 IPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWK 422 (430)
Q Consensus 391 ~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~ 422 (430)
...|++++| ++++|+||+.||+|+|||
T Consensus 289 -----~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 289 -----EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp -----SSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred -----CCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 458999998 578899999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-40 Score=297.88 Aligned_cols=278 Identities=14% Similarity=0.190 Sum_probs=232.1
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeE---Eeee--c-CCceeEEEEecCCCEEE-EEeCCe
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV---EEYS--L-PNAASLVDFDFDESKIV-GLIGTR 173 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~---~~~~--~-~~~~~~~~~~~~~~~l~-~~~~~~ 173 (430)
..++++ +|...|.|++| +++ +|+||+ ||.|+|||+.++... .... . ...+..++|+|++++|+ ++.|+.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred eEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccc
Confidence 445556 89999999999 455 899987 899999999765322 2222 2 35578899999999998 889999
Q ss_pred EEEEEcCCCccc----ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEE
Q 014104 174 ICIWRRNGLRSV----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLII 248 (430)
Q Consensus 174 i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~ 248 (430)
|++||+...... +..+.. .....++.+.+..+++++.|+.|++||+.++++......|...|.+++|+++ ..++
T Consensus 121 i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~ 199 (337)
T d1gxra_ 121 LSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999998765421 222222 2233445556666999999999999999999999999999999999999975 8999
Q ss_pred EEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeC
Q 014104 249 SGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQN 328 (430)
Q Consensus 249 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~ 328 (430)
+++.|+.+++||+++++.+..+. +...|.+++|+|++++|++|+.|+.+++||+++++.. ....|...|.+++ |+|
T Consensus 200 ~~~~d~~v~i~d~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~-~s~ 275 (337)
T d1gxra_ 200 TGGLDNTVRSWDLREGRQLQQHD--FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLK-FAY 275 (337)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEE-ECT
T ss_pred cccccccccccccccceeecccc--cccceEEEEEcccccccceeccccccccccccccccc-cccccccccceEE-ECC
Confidence 99999999999999999988886 7789999999999999999999999999999988765 4567889999999 999
Q ss_pred CCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cC
Q 014104 329 DTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GM 406 (430)
Q Consensus 329 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~ 406 (430)
++++|++++.||.|++||+.+++.+..+. |...|++++| ++
T Consensus 276 ~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-------------------------------------~~~~v~~~~~s~d~ 318 (337)
T d1gxra_ 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSK-------------------------------------ESSSVLSCDISVDD 318 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEE-------------------------------------CSSCEEEEEECTTS
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEcc-------------------------------------CCCCEEEEEEeCCC
Confidence 99999999999999999999999887653 3457899988 58
Q ss_pred eEEEEeeCCCeEEEEEec
Q 014104 407 KKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 407 ~~l~t~~~Dg~v~vw~~~ 424 (430)
++|+||+.||+|+|||+-
T Consensus 319 ~~l~t~s~D~~I~vWdl~ 336 (337)
T d1gxra_ 319 KYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CEEEEEETTSCEEEEEEE
T ss_pred CEEEEEeCCCeEEEEEEE
Confidence 899999999999999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.4e-38 Score=285.30 Aligned_cols=282 Identities=17% Similarity=0.209 Sum_probs=239.8
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd 178 (430)
...++|+||.++|++++| +++ +|+||+.||+|+|||+.+++.+..+..+ ..+..++|+|++.+++ ++.|+.+.+|+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence 456789999999999999 556 9999999999999999999999999876 5577899999999999 88999999999
Q ss_pred cCCCcccc---cCCCCce-eeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCC
Q 014104 179 RNGLRSVF---PSREGTF-MKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSL 253 (430)
Q Consensus 179 ~~~~~~~~---~~~~~~~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~d 253 (430)
........ ....++. .........+..+.....+.....++............+...+....+.+. .++++|+.|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 205 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD 205 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred ccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecC
Confidence 87654211 1111111 122333334555888899999999999888887777778888999888865 899999999
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee--ecCCCceEEEEEeeCCCC
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET--RISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~s~~~~ 331 (430)
+.|++||+++++.+..+.+ |...|++++|+|++++|++|+.||.|++||++..+.+..+ ..+...|.+++ |+|+++
T Consensus 206 ~~v~i~d~~~~~~~~~~~~-h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s~~~~ 283 (340)
T d1tbga_ 206 ASAKLWDVREGMCRQTFTG-HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVS-FSKSGR 283 (340)
T ss_dssp TEEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEE-ECSSSC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEE-ECCCCC
Confidence 9999999999999999987 8889999999999999999999999999999988877654 34557799998 999999
Q ss_pred eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEE
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKV 409 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l 409 (430)
+|++|+.||.|++||+.+++++.++.+ |...|++++| ++++|
T Consensus 284 ~l~~g~~dg~i~iwd~~~~~~~~~~~~------------------------------------H~~~V~~l~~s~d~~~l 327 (340)
T d1tbga_ 284 LLLAGYDDFNCNVWDALKADRAGVLAG------------------------------------HDNRVSCLGVTDDGMAV 327 (340)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECC------------------------------------CSSCEEEEEECTTSSCE
T ss_pred EEEEEECCCEEEEEECCCCcEEEEEcC------------------------------------CCCCEEEEEEeCCCCEE
Confidence 999999999999999999999988865 4458999999 57899
Q ss_pred EEeeCCCeEEEEE
Q 014104 410 VTTHNSKYIRLWK 422 (430)
Q Consensus 410 ~t~~~Dg~v~vw~ 422 (430)
+|||.||+|+|||
T Consensus 328 ~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 328 ATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEccCCEEEEeC
Confidence 9999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-38 Score=283.20 Aligned_cols=277 Identities=13% Similarity=0.094 Sum_probs=232.5
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc-
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV- 185 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~- 185 (430)
+.+.+.++++ ++| .|+.++ ++.|.+||+.+++..+.+.+| +.+.+++|+|++++|+ ++.||.|++||+.+....
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence 4455667777 556 777664 668999999999888888876 6788899999999999 889999999999887643
Q ss_pred ---ccCCCCceeeeeEEEEcCCceEEEec--CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-EEEEEeCCCeEEE
Q 014104 186 ---FPSREGTFMKGLCMRYFDPEAVVGCE--DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAI 258 (430)
Q Consensus 186 ---~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~v 258 (430)
+..+.+. +..+++.+++..+++++. +..+++|++++++....+.+|...|++++|+|+ + .+++|+.|+.|++
T Consensus 95 ~~~~~~~~~~-v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i 173 (311)
T d1nr0a1 95 KTTIPVFSGP-VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 173 (311)
T ss_dssp EEEEECSSSC-EEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred ccccccccCc-cccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence 3333333 344556666667888875 456999999999999999999999999999975 4 6889999999999
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeee-------ecCCCceEEEEEeeCCCC
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWET-------RISPNVVYSLQHLQNDTS 331 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~s~~~~ 331 (430)
||+++++....+.. |..+|+++.|+|+++++++++.|+.|++||.++++.+..+ .+|.+.|++++ |+|+++
T Consensus 174 ~d~~~~~~~~~~~~-~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~-~s~~~~ 251 (311)
T d1nr0a1 174 FEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT-WSPDGT 251 (311)
T ss_dssp EETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE-ECTTSS
T ss_pred cccccccccccccc-ccccccccccCccccccccccccccccccccccccccccccccccccccccccccccc-cCCCCC
Confidence 99999999888887 8889999999999999999999999999999988766544 35788999999 999999
Q ss_pred eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEE
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVT 411 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t 411 (430)
+|++|+.||.|+|||++++++++++..+.. +...+.++.+++++|++
T Consensus 252 ~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~---------------------------------~~~~~~~~~~~~~~l~s 298 (311)
T d1nr0a1 252 KIASASADKTIKIWNVATLKVEKTIPVGTR---------------------------------IEDQQLGIIWTKQALVS 298 (311)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSS---------------------------------GGGCEEEEEECSSCEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEECCCC---------------------------------ccceEEEEEecCCEEEE
Confidence 999999999999999999999999876543 12356678888899999
Q ss_pred eeCCCeEEEEEec
Q 014104 412 THNSKYIRLWKFN 424 (430)
Q Consensus 412 ~~~Dg~v~vw~~~ 424 (430)
++.||.|++||.+
T Consensus 299 ~s~dG~i~~wd~d 311 (311)
T d1nr0a1 299 ISANGFINFVNPE 311 (311)
T ss_dssp EETTCCEEEEETT
T ss_pred EECCCEEEEEeCC
Confidence 9999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-38 Score=289.11 Aligned_cols=279 Identities=19% Similarity=0.244 Sum_probs=223.8
Q ss_pred EEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-------------------CceeEEEEecCCC
Q 014104 106 DQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-------------------NAASLVDFDFDES 164 (430)
Q Consensus 106 ~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~ 164 (430)
....+|++.|+|++| ++| +|++|+ |++|+|||+.+++.+..+..+ ..+..++|+|+++
T Consensus 56 ~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~ 134 (388)
T d1erja_ 56 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK 134 (388)
T ss_dssp EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCC
Confidence 344579999999999 566 888886 899999999998887766432 2366799999999
Q ss_pred EEE-EEeCCeEEEEEcCCCccccc--CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEe
Q 014104 165 KIV-GLIGTRICIWRRNGLRSVFP--SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSL 241 (430)
Q Consensus 165 ~l~-~~~~~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~ 241 (430)
+|+ ++.|+.|++||...++.... .+... +....+...+..+++++.++.+++||..+.........+.. ..++.+
T Consensus 135 ~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~ 212 (388)
T d1erja_ 135 FLATGAEDRLIRIWDIENRKIVMILQGHEQD-IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAV 212 (388)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEE
T ss_pred cceeccccccccccccccccccccccccccc-ccccccccccccccccccceeeeeeeccccccccccccccc-cccccc
Confidence 999 88999999999998875432 23332 23344445555699999999999999999888777765544 555555
Q ss_pred cC-C-CEEEEEeCCCeEEEEeCCCCceeEEEec------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce----
Q 014104 242 SE-D-QLIISGSSLGSIAISGLSSDQRVATLRS------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS---- 309 (430)
Q Consensus 242 ~~-~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~---- 309 (430)
.+ + .++++|+.|+.|++||.+++.....+.. .|...|.+++|+|++++|++|+.||.|++||+++++.
T Consensus 213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 292 (388)
T d1erja_ 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292 (388)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence 53 3 7999999999999999999988776642 2567899999999999999999999999999976532
Q ss_pred --------eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccc
Q 014104 310 --------LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRR 381 (430)
Q Consensus 310 --------~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~ 381 (430)
......|...|.+++ ++|++++|++|+.||.|++||+.+++++.++.+|.+
T Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~-~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~-------------------- 351 (388)
T d1erja_ 293 KTPNSGTCEVTYIGHKDFVLSVA-TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-------------------- 351 (388)
T ss_dssp ------CEEEEEECCSSCEEEEE-ECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--------------------
T ss_pred ccccccceeeecccccceEEEEE-ECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--------------------
Confidence 334566888999999 999999999999999999999999999999987554
Q ss_pred ccCCcccccCCCCCCCCeeEEEE--------cCeEEEEeeCCCeEEEEEec
Q 014104 382 LSAGCCIDRIPKTIRPPITCLAV--------GMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 382 ~~~~~~~~~~~~~h~~~v~~v~~--------~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.|+++++ ++++|+|||.||+|+||+++
T Consensus 352 ----------------~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 352 ----------------SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ----------------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred ----------------CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 6666654 47889999999999999985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=9.5e-38 Score=276.87 Aligned_cols=282 Identities=10% Similarity=0.084 Sum_probs=221.5
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeec-C-CceeEEEEecCCCEEEEEeCCeEEEEE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSL-P-NAASLVDFDFDESKIVGLIGTRICIWR 178 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~~~i~vwd 178 (430)
...+.+.||.++|++++| +++ +|+||+.||+|++||+++++.+..+.. | ..+..++|+|++..++++.|+.+++|+
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVP 82 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEEC
T ss_pred ccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEec
Confidence 467889999999999999 566 999999999999999999998888753 3 457779999999988899999999999
Q ss_pred cCCCccc-----ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC
Q 014104 179 RNGLRSV-----FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS 252 (430)
Q Consensus 179 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~ 252 (430)
....... ...+.. ....+++.+.+. +++++.++.+.+|+.. +..... ....+.+++++|+ +++++|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~-~~~~~~~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~~ 156 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSS-QPLGLAVSADGD-IAVAACYKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGGQ 156 (299)
T ss_dssp SSSSSSCTTSCCEEECSS-CEEEEEECTTSS-CEEEEESSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEET
T ss_pred cCCccccccccccccccc-cccccccccccc-cccccccccccccccc--cccccc--cccccccccccccccccccccc
Confidence 8764321 111111 122344444443 5555566799999953 333333 3456789999986 79999999
Q ss_pred CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee---eeeecCCCceEEEEEeeCC
Q 014104 253 LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL---WETRISPNVVYSLQHLQND 329 (430)
Q Consensus 253 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~v~~l~~~s~~ 329 (430)
|+.|++||+++++........|...|++++|+|++++|++++.|+.|++||+.++..+ ..+.+|...|.+++ |+|+
T Consensus 157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~s~~ 235 (299)
T d1nr0a2 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS-WSPD 235 (299)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE-ECTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 9999999998887654433337889999999999999999999999999999887654 34667889999999 9999
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCeE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMKK 408 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~~ 408 (430)
+++|++|+.||.|++||++++........+ .++...|.++.+ ++++
T Consensus 236 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~---------------------------------~~~~~~v~~~~~~~~~~ 282 (299)
T d1nr0a2 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKG---------------------------------AHAMSSVNSVIWLNETT 282 (299)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETT---------------------------------SSTTSCEEEEEEEETTE
T ss_pred ccceEEEcCCCEEEEEECCCCCcceEEEec---------------------------------CCCCCcEEEEEECCCCE
Confidence 999999999999999999876544333221 224457888777 6889
Q ss_pred EEEeeCCCeEEEEEec
Q 014104 409 VVTTHNSKYIRLWKFN 424 (430)
Q Consensus 409 l~t~~~Dg~v~vw~~~ 424 (430)
|+||+.||+|++||+.
T Consensus 283 l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 283 IVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEEeCCCEEEEEecc
Confidence 9999999999999985
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-35 Score=269.10 Aligned_cols=310 Identities=15% Similarity=0.134 Sum_probs=237.0
Q ss_pred eEEEEeccccce-eEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 104 DIDQWKAHSVGV-DQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 104 ~~~~l~~h~~~v-~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
+..+|+||.+.| +|+.+++++|+||+.||+|+|||+.+++++.++.+| ..+..++|++++ .|+ ++.|+.|++|+..
T Consensus 4 ~~~tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~ 82 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 82 (355)
T ss_dssp EEEEEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETT
T ss_pred CcEEECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccc
Confidence 456899998875 788888779999999999999999999999999986 567789999865 555 8999999999999
Q ss_pred CCcccccCCCC-ceeeee--EEEEcCCceEEEecCCeEEEEECCCCeeeEEe-----------------------ecCCC
Q 014104 181 GLRSVFPSREG-TFMKGL--CMRYFDPEAVVGCEDGTARVFDMYSRKCSQII-----------------------RMHCA 234 (430)
Q Consensus 181 ~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------------------~~~~~ 234 (430)
........... ...... ...+.+..+++++.|+.|++||+.+....... ..|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (355)
T d1nexb2 83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 162 (355)
T ss_dssp TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence 87754322222 112222 22233344899999999999999876543221 22333
Q ss_pred CeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeee
Q 014104 235 PVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETR 314 (430)
Q Consensus 235 ~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 314 (430)
.+..... .++.++++..|+.|++||+++++.+..... +...+.++.++|+++.+++++.|+.|++||.+++..+..+.
T Consensus 163 ~v~~~~~-~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~ 240 (355)
T d1nexb2 163 SVRTVSG-HGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240 (355)
T ss_dssp CEEEEEE-ETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ccccccc-ccceeeeecccceeeeeecccccceeeeec-cccccccccccccceeeecccccceEEeeeccccccccccc
Confidence 4433333 247899999999999999999999888876 67789999999999999999999999999999999999999
Q ss_pred cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc----------eeeeccCCceEEEeecccccC
Q 014104 315 ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA----------SSSSNKVSGVIERNEGRRLSA 384 (430)
Q Consensus 315 ~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~----------~~~~~s~d~~v~~~~~~~~~~ 384 (430)
+|...|.++. ++ +++|++|+.||.|++||+.++...... |...+ .+++++.|+.+++|+. .+
T Consensus 241 ~h~~~v~~~~-~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~---~t 312 (355)
T d1nexb2 241 GHTALVGLLR-LS--DKFLVSAAADGSIRGWDANDYSRKFSY--HHTNLSAITTFYVSDNILVSGSENQFNIYNL---RS 312 (355)
T ss_dssp CCSSCCCEEE-EC--SSEEEEECTTSEEEEEETTTCCEEEEE--ECTTCCCCCEEEECSSEEEEEETTEEEEEET---TT
T ss_pred cccccccccc-cc--cceeeeeecccccccccccccceeccc--ccCCceEEEEEcCCCCEEEEEeCCEEEEEEC---CC
Confidence 9999999988 64 579999999999999999987654433 33322 2334445888887664 34
Q ss_pred CcccccCCCCCCCCeeEEEEcCe-EEEEeeCCCeEEEEEec
Q 014104 385 GCCIDRIPKTIRPPITCLAVGMK-KVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 385 ~~~~~~~~~~h~~~v~~v~~~~~-~l~t~~~Dg~v~vw~~~ 424 (430)
++.+.....+|...|++++|+++ .+++++.||+++||.++
T Consensus 313 g~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 313 GKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp CCBCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEE
T ss_pred CCEEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEe
Confidence 55565666789999999999754 56778999998777654
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.1e-37 Score=280.32 Aligned_cols=312 Identities=12% Similarity=0.076 Sum_probs=225.4
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCe--eEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYK--CVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS 184 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~ 184 (430)
+.++|+|++| +++ +||+|+.||.|+|||..+++ .+..+.+| ..+..++|+|++++|+ ++.|+.|++||++++..
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence 3578999999 566 99999999999999998775 56667766 5678899999999999 88899999999987652
Q ss_pred --cc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee----eEEeecCCCCeEEEEecCC-CEEEEEeCCCe
Q 014104 185 --VF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC----SQIIRMHCAPVTSLSLSED-QLIISGSSLGS 255 (430)
Q Consensus 185 --~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~----~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~ 255 (430)
.. ..+. .....+++.+++..+++++.|+.|++|++..... ......|...|.+++|+|+ .+|++|+.|++
T Consensus 86 ~~~~~~~~~~-~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~ 164 (371)
T d1k8kc_ 86 KPTLVILRIN-RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164 (371)
T ss_dssp EEEEECCCCS-SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred cccccccccc-ccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcE
Confidence 22 2222 2234455666777799999999999998876543 3344578899999999986 79999999999
Q ss_pred EEEEeCCCC------------------ceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCC
Q 014104 256 IAISGLSSD------------------QRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISP 317 (430)
Q Consensus 256 i~vwd~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 317 (430)
|++||.... +.+..... |...|.+++|+|+|++|++++.|+.|++||+.+++.+..+..|.
T Consensus 165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~ 243 (371)
T d1k8kc_ 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET 243 (371)
T ss_dssp EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred EEEEeeccCccccccccccccccccceeeeeeccC-ccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence 999998643 23444444 77789999999999999999999999999999999999999999
Q ss_pred CceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeee---ccCCceEEEeec--ccccCCcccccCC
Q 014104 318 NVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSS---NKVSGVIERNEG--RRLSAGCCIDRIP 392 (430)
Q Consensus 318 ~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~---~s~d~~v~~~~~--~~~~~~~~~~~~~ 392 (430)
.+|.+++ |+|++++|++|+ |+.+++|+.........+........... .+........+. ...........+.
T Consensus 244 ~~v~s~~-fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (371)
T d1k8kc_ 244 LPLLAVT-FITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 321 (371)
T ss_dssp CCEEEEE-EEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred ccceeee-ecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceec
Confidence 9999999 999998887665 77777776654443333332211000000 000000000000 0000011122334
Q ss_pred CCCCCCeeEEEEc------CeEEEEeeCCCeEEEEEecCC
Q 014104 393 KTIRPPITCLAVG------MKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 393 ~~h~~~v~~v~~~------~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
..|...|+++++. ...|+|+|.||.|+|||+++.
T Consensus 322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~ 361 (371)
T d1k8kc_ 322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361 (371)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred ccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcC
Confidence 5699999999981 246999999999999999753
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.7e-36 Score=267.80 Aligned_cols=283 Identities=17% Similarity=0.224 Sum_probs=224.0
Q ss_pred EeEEEEecccccee-EEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 103 IDIDQWKAHSVGVD-QCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 103 ~~~~~l~~h~~~v~-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.+.+.|+||.+.|. |+.+++.+|+||+.||+|+|||+.+++++.++.+| ..+..+++++ +.|+ ++.|+.+++|+.
T Consensus 7 ~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~ 84 (342)
T d2ovrb2 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNA 84 (342)
T ss_dssp CCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEET
T ss_pred CcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC--Cccccceeccccccccc
Confidence 35678999999985 56666669999999999999999999999999876 4455677765 4777 889999999998
Q ss_pred CCCcccccCCCC-------------------------------c--------eeeeeEEEEcCCceEEEecCCeEEEEEC
Q 014104 180 NGLRSVFPSREG-------------------------------T--------FMKGLCMRYFDPEAVVGCEDGTARVFDM 220 (430)
Q Consensus 180 ~~~~~~~~~~~~-------------------------------~--------~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 220 (430)
............ . .............+++++.|+.|++||.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~ 164 (342)
T d2ovrb2 85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164 (342)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence 764421111000 0 0011122333445889999999999999
Q ss_pred CCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 221 YSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 221 ~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
...+.+..+.+|...+..+.+ ++..+++|+.||.|++||++.++.+..+.. |...+.++.++ +++|++|+.|+.|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~s~d~~i~ 240 (342)
T d2ovrb2 165 ETETCLHTLQGHTNRVYSLQF-DGIHVVSGSLDTSIRVWDVETGNCIHTLTG-HQSLTSGMELK--DNILVSGNADSTVK 240 (342)
T ss_dssp GGTEEEEEECCCSSCEEEEEE-CSSEEEEEETTSCEEEEETTTCCEEEEECC-CCSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred ccceeeEEEcCcccccccccC-CCCEEEEEeCCCeEEEeecccceeeeEecc-cccceeEEecC--CCEEEEEcCCCEEE
Confidence 999999999999888877777 457899999999999999999999998887 77788888775 47999999999999
Q ss_pred EEeCCCCceeeeeecC---CCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEe
Q 014104 301 CWDLRTMKSLWETRIS---PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERN 377 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~---~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~ 377 (430)
+||+...+....+..+ ...+.++. +++.++++|+.||.|++||++++++++++.....
T Consensus 241 iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~---------------- 301 (342)
T d2ovrb2 241 IWDIKTGQCLQTLQGPNKHQSAVTCLQ---FNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES---------------- 301 (342)
T ss_dssp EEETTTCCEEEEECSTTSCSSCEEEEE---ECSSEEEEEETTSEEEEEETTTCCEEEEEEECTT----------------
T ss_pred EEecccccccccccccceeeeceeecc---cCCCeeEEEcCCCEEEEEECCCCCEEEEEecccC----------------
Confidence 9999988877776654 34555544 5678999999999999999999999998875433
Q ss_pred ecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCe----EEEEEecC
Q 014104 378 EGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKY----IRLWKFNY 425 (430)
Q Consensus 378 ~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~----v~vw~~~~ 425 (430)
.+|...|++++| ++.++++|+.||+ |++||++.
T Consensus 302 ---------------~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 302 ---------------GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ---------------GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ---------------CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 356778999999 4678999999985 99999975
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-34 Score=251.61 Aligned_cols=274 Identities=22% Similarity=0.311 Sum_probs=223.0
Q ss_pred eEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCC
Q 014104 104 DIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGL 182 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 182 (430)
++..+.+|...|+|+.+++.+||||+.||+|+|||+.+++++.++.+|.. .+.++++++++|+ ++.|+.+++|++..+
T Consensus 7 ~i~~~~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~-~V~~v~~~~~~l~s~s~D~~i~~~~~~~~ 85 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTG-SVLCLQYDERVIITGSSDSTVRVWDVNTG 85 (293)
T ss_dssp CEECCCSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSS-CEEEEECCSSEEEEEETTSCEEEEESSSC
T ss_pred EEeccCCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCC-CEeeeecccceeecccccccccccccccc
Confidence 45556788999999998766999999999999999999999999987643 3456677889988 889999999999988
Q ss_pred cccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee---eEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEE
Q 014104 183 RSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC---SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAIS 259 (430)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vw 259 (430)
........... ...........++++..++.+.+||..+... ...+..|...+..+.+.+ ..+++++.|+.|++|
T Consensus 86 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~s~d~~i~~~ 163 (293)
T d1p22a2 86 EMLNTLIHHCE-AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVW 163 (293)
T ss_dssp CEEEEECCCCS-CEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEE
T ss_pred ccccccccccc-ccccccccccceeecccccceeEeeccccccccccccccccccccccceecc-cccccccCCCceeee
Confidence 75443333222 2234444555699999999999999887643 445567888888888754 467888999999999
Q ss_pred eCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 260 GLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 260 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
|+++++.+..+.+ +...+..+.++ +..+++++.||.|++||+++.+.+....+|...+.. +++++.+|++|+.|
T Consensus 164 d~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~---~~~~~~~l~sg~~d 237 (293)
T d1p22a2 164 NTSTCEFVRTLNG-HKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC---IRFDNKRIVSGAYD 237 (293)
T ss_dssp ETTTCCEEEEEEC-CSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE---EECCSSEEEEEETT
T ss_pred cCCCCcEEEEEcc-cccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccceeeee---ccccceEEEEEcCC
Confidence 9999999999987 66678777774 578999999999999999999999999988887765 45788999999999
Q ss_pred CeEEEEEcCCCc---------eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEE
Q 014104 340 GVLRVLDQNTGE---------VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVV 410 (430)
Q Consensus 340 g~i~vwd~~~~~---------~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~ 410 (430)
|.|++||+.++. +++.+ .+|.+.|++++||+++|+
T Consensus 238 g~i~iwd~~~~~~~~~~~~~~~~~~~------------------------------------~~H~~~V~~v~~d~~~l~ 281 (293)
T d1p22a2 238 GKIKVWDLVAALDPRAPAGTLCLRTL------------------------------------VEHSGRVFRLQFDEFQIV 281 (293)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEE------------------------------------CCCSSCCCCEEECSSCEE
T ss_pred CEEEEEECCCCccccccCCceeeEEe------------------------------------cCCCCCEEEEEEcCCEEE
Confidence 999999986432 23333 457779999999999999
Q ss_pred EeeCCCeEEEEE
Q 014104 411 TTHNSKYIRLWK 422 (430)
Q Consensus 411 t~~~Dg~v~vw~ 422 (430)
|||.||+|+|||
T Consensus 282 s~s~Dg~i~iWD 293 (293)
T d1p22a2 282 SSSHDDTILIWD 293 (293)
T ss_dssp ECCSSSEEEEEC
T ss_pred EEecCCEEEEeC
Confidence 999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.5e-34 Score=254.35 Aligned_cols=244 Identities=14% Similarity=0.192 Sum_probs=200.0
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeE--EeeecC-CceeEEEEecCCCEEE-EEe--CCeE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCV--EEYSLP-NAASLVDFDFDESKIV-GLI--GTRI 174 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~--~~~~~~-~~~~~~~~~~~~~~l~-~~~--~~~i 174 (430)
...+.+.+|.+.|++++| |++ +|++|+.||+|++||+.+++.. ..+..+ ..+..++|+++++.++ ++. +..+
T Consensus 49 ~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~ 128 (311)
T d1nr0a1 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 128 (311)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccc
Confidence 355678999999999999 566 9999999999999999887543 445554 5677899999999998 443 4569
Q ss_pred EEEEcCCCccc--ccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE
Q 014104 175 CIWRRNGLRSV--FPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG 250 (430)
Q Consensus 175 ~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~ 250 (430)
++|++++++.. +..+... +..+++.+.++. +++|+.||.|++||+++++....+..|..+|+++.++|+ ++++++
T Consensus 129 ~v~~~~~~~~~~~l~~h~~~-v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~ 207 (311)
T d1nr0a1 129 HVFLFDTGTSNGNLTGQARA-MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 207 (311)
T ss_dssp EEEETTTCCBCBCCCCCSSC-EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccccccccccccc-cccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccc
Confidence 99999987643 3333333 334556666665 888999999999999999999999999999999999986 899999
Q ss_pred eCCCeEEEEeCCCCceeEEEec------CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCc-eEEE
Q 014104 251 SSLGSIAISGLSSDQRVATLRS------TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNV-VYSL 323 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-v~~l 323 (430)
+.|+.|++||+.++.....+.. .|...|++++|+|++++|++|+.||.|++||+++++++.++..|... ...+
T Consensus 208 ~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~ 287 (311)
T d1nr0a1 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287 (311)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEE
Confidence 9999999999999988877653 25678999999999999999999999999999999999988876532 2223
Q ss_pred EEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 324 QHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 324 ~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
. +.+++..|++++.||.|++||.+
T Consensus 288 ~-~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 288 G-IIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp E-EEECSSCEEEEETTCCEEEEETT
T ss_pred E-EEecCCEEEEEECCCEEEEEeCC
Confidence 3 44567789999999999999974
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-33 Score=259.85 Aligned_cols=299 Identities=15% Similarity=0.168 Sum_probs=217.1
Q ss_pred EEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCee-------EEeeecCCce---eEEE-EecC---CCEEE-EE
Q 014104 105 IDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKC-------VEEYSLPNAA---SLVD-FDFD---ESKIV-GL 169 (430)
Q Consensus 105 ~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~~~~~~~---~~~~-~~~~---~~~l~-~~ 169 (430)
....++|.+.|.++++.+++++|||.|++|+|||..+.+. .......... .... ...+ ...++ ++
T Consensus 7 ~~~~~~H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp EEESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred eecCCcccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 3456899999999999888999999999999999765431 1211111111 1111 1222 22344 67
Q ss_pred eCCeEEEEEcCCCcccc-------cC----CCCceeeeeEEEEcC-----CceEEEecCCeEEEEECCCCe---------
Q 014104 170 IGTRICIWRRNGLRSVF-------PS----REGTFMKGLCMRYFD-----PEAVVGCEDGTARVFDMYSRK--------- 224 (430)
Q Consensus 170 ~~~~i~vwd~~~~~~~~-------~~----~~~~~~~~~~~~~~~-----~~l~~~~~dg~i~vwd~~~~~--------- 224 (430)
.||.+++|++....... .. .........++.... ..+++++.||++++||+....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 79999999976433210 00 011112233444332 338899999999999974321
Q ss_pred ---------eeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEec-----CCCCCeEEEEEecCCCEE
Q 014104 225 ---------CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS-----TDCTGIKTLCYNPCSRLV 290 (430)
Q Consensus 225 ---------~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l 290 (430)
.......+...+.+++|+|+.++++|+.|++|++||+.+++.+..+.. .|..+|.+++|+|+|++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l 246 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE
T ss_pred eccceecccceecccCCCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccccee
Confidence 011112345678999999988999999999999999999998776653 267799999999999999
Q ss_pred EEEeCCC---eEEEEeCCCCceeeeee-------------cCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEE
Q 014104 291 FAGTTAG---YASCWDLRTMKSLWETR-------------ISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 291 ~~~~~dg---~i~i~d~~~~~~~~~~~-------------~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 354 (430)
++|+.|+ .|++||+++++.+..+. +|.+.|++++ |+|++++|++|+.|++|++||+++|++++
T Consensus 247 ~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~-fspd~~~l~S~s~D~~v~vWd~~~g~~~~ 325 (393)
T d1sq9a_ 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS-FNDSGETLCSAGWDGKLRFWDVKTKERIT 325 (393)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEE-ECSSSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred eeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeec-cCCCCCeeEEECCCCEEEEEECCCCCEEE
Confidence 9999887 49999999988776653 7999999999 99999999999999999999999999999
Q ss_pred EEEeccCcce----eeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE------------cCeEEEEeeCCCeE
Q 014104 355 RCVMDIGSAS----SSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV------------GMKKVVTTHNSKYI 418 (430)
Q Consensus 355 ~~~~~~~~~~----~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~------------~~~~l~t~~~Dg~v 418 (430)
++.+|.+.+. .+++++++... ....+.++.+ ..+.+++++.|+.|
T Consensus 326 ~l~gH~~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 386 (393)
T d1sq9a_ 326 TLNMHCDDIEIEEDILAVDEHGDSL-------------------AEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI 386 (393)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBC-------------------SSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE
T ss_pred EECCcCCcccCCccEEEECCCCCEE-------------------EEcccceEEECccCceeccccCCCCEEEEEEcCCeE
Confidence 9999988664 35666666431 1123444443 13569999999999
Q ss_pred EEEEe
Q 014104 419 RLWKF 423 (430)
Q Consensus 419 ~vw~~ 423 (430)
|+|+-
T Consensus 387 r~~~~ 391 (393)
T d1sq9a_ 387 RWFRE 391 (393)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 99974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-32 Score=248.25 Aligned_cols=235 Identities=13% Similarity=0.207 Sum_probs=198.7
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC--eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY--KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~--~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
...+|.+.|.+++| +++ +|++|+.||+|++||+... +....+..+ ..+..+++++++..++ ++.++.+.+|++.
T Consensus 92 ~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~ 171 (337)
T d1gxra_ 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171 (337)
T ss_dssp ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred eecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34589999999999 566 9999999999999998753 455666655 4566789999999998 7889999999999
Q ss_pred CCcccc--cCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 181 GLRSVF--PSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 181 ~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
+++... ..+... ...+++.+.+..+++++.|+.+++||+++++.+..+. |.+.|.+++|+|+ +.+++|+.|+.++
T Consensus 172 ~~~~~~~~~~~~~~-v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~ 249 (337)
T d1gxra_ 172 NQTLVRQFQGHTDG-ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVE 249 (337)
T ss_dssp TTEEEEEECCCSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccceeecccc-cccceEEEEEcccccccceeccccccc
Confidence 887432 222222 3345555666779999999999999999999887775 8899999999976 7999999999999
Q ss_pred EEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc
Q 014104 258 ISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG 337 (430)
Q Consensus 258 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~ 337 (430)
+||+++++...... |...|++++|+|++++|++|+.||.|++||+.+++.+..+. |.+.|.+++ |+|++++|++|+
T Consensus 250 i~d~~~~~~~~~~~--~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~-~s~d~~~l~t~s 325 (337)
T d1gxra_ 250 VLHVNKPDKYQLHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCD-ISVDDKYIVTGS 325 (337)
T ss_dssp EEETTSSCEEEECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEE-ECTTSCEEEEEE
T ss_pred cccccccccccccc--cccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEE-EeCCCCEEEEEe
Confidence 99999888765443 88899999999999999999999999999999999887755 678999998 999999999999
Q ss_pred CCCeEEEEEc
Q 014104 338 IDGVLRVLDQ 347 (430)
Q Consensus 338 ~dg~i~vwd~ 347 (430)
.||+|+|||+
T Consensus 326 ~D~~I~vWdl 335 (337)
T d1gxra_ 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999996
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.1e-33 Score=246.06 Aligned_cols=270 Identities=13% Similarity=0.136 Sum_probs=206.4
Q ss_pred CEeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCC
Q 014104 102 RIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNG 181 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~ 181 (430)
.+++++|+||.++|++++|+. |+||+.||+|++||+.++.. .+...+..+++++++..+.++.|+++++|++..
T Consensus 3 ~~~i~~l~gH~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~~----~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~ 76 (287)
T d1pgua2 3 DEVLKTISGHNKGITALTVNP--LISGSYDGRIMEWSSSSMHQ----DHSNLIVSLDNSKAQEYSSISWDDTLKVNGITK 76 (287)
T ss_dssp EEEEEEECCCSSCEEEEETTT--TEEEETTSCEEETTTTEEEC----CCCSCEEEEECCSTTCCEEEETTTEEEETTEEE
T ss_pred cceeEEECCCCCceEEEEECc--EEEEeCCCeEEEEECCCCCC----CCCCCEEEEEecCCCeEEEEeeccccccccccc
Confidence 357899999999999999965 99999999999999876432 122456678888776655589999999999765
Q ss_pred CcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCC-CeEEEEe
Q 014104 182 LRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSL-GSIAISG 260 (430)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d-g~i~vwd 260 (430)
.+.. ......++. .+..++..+.++.+.+|+..+++.+..+.. ...+.++..+ ++.+++++.+ +.+++|+
T Consensus 77 ~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~v~~~~~~~v~~~~ 147 (287)
T d1pgua2 77 HEFG------SQPKVASAN-NDGFTAVLTNDDDLLILQSFTGDIIKSVRL-NSPGSAVSLS-QNYVAVGLEEGNTIQVFK 147 (287)
T ss_dssp EECS------SCEEEEEEC-SSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSCEEEEEEC-SSEEEEEETTTSCEEEEE
T ss_pred cccc------cceeeeeec-cCCceEEEeecccceeeeccceeeeeeccc-cceeeeeecc-Ccceeeeccccceeeeee
Confidence 4311 111112222 222355566777899999999988888764 3455555543 3455555555 5799999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee-eeecCCCceEEEEEeeCC----------
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW-ETRISPNVVYSLQHLQND---------- 329 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~s~~---------- 329 (430)
+...+....+...+...+++++|+|++.+|++|+.||.|++||+.+++... .+.+|...|.+++ |+|.
T Consensus 148 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~-~~p~~~~~~~~~~~ 226 (287)
T d1pgua2 148 LSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS-WKPAEKGANEEEIE 226 (287)
T ss_dssp TTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEE-ECCCC------CCS
T ss_pred ccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceee-ecccccccccccCC
Confidence 987777777666677899999999999999999999999999999887654 4678999999998 7764
Q ss_pred CCeEEEEcCCCeEEEEEcCCCc-eEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE-cCe
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGE-VLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV-GMK 407 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~-~~~ 407 (430)
+.++++|+.|++|++||++++. .+..+ .+|...|++++| ++.
T Consensus 227 ~~~l~sgs~D~~i~iw~~~~~~~~~~~~------------------------------------~~h~~~V~~v~~~~~~ 270 (287)
T d1pgua2 227 EDLVATGSLDTNIFIYSVKRPMKIIKAL------------------------------------NAHKDGVNNLLWETPS 270 (287)
T ss_dssp CCEEEEEETTSCEEEEESSCTTCCEEET------------------------------------TSSTTCEEEEEEEETT
T ss_pred CCeeEeecCCCeEEEEECCCCCeEEEEe------------------------------------CCCCCCeEEEEECCCC
Confidence 5689999999999999997643 33322 357779999998 355
Q ss_pred EEEEeeCCCeEEEEEe
Q 014104 408 KVVTTHNSKYIRLWKF 423 (430)
Q Consensus 408 ~l~t~~~Dg~v~vw~~ 423 (430)
.|+|+|.||+|++|++
T Consensus 271 ~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 271 TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEEETTSCEEEEEE
T ss_pred EEEEEECCCeEEEEEE
Confidence 7999999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-32 Score=243.87 Aligned_cols=276 Identities=12% Similarity=0.114 Sum_probs=211.3
Q ss_pred ceeEEEe-cCC-eEEEEeCCC-eEEEEecCCC--eeEEeeecC--CceeEEEEec--CCCEEE-EEeCCeEEEEEcCCCc
Q 014104 114 GVDQCRM-KRG-LILTGVGDK-VMRLWSLEGY--KCVEEYSLP--NAASLVDFDF--DESKIV-GLIGTRICIWRRNGLR 183 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg-~i~iwd~~~~--~~~~~~~~~--~~~~~~~~~~--~~~~l~-~~~~~~i~vwd~~~~~ 183 (430)
.+++++| +++ .|+.++.+. .|+.||.... ..+..+.+| ..+.+++|+| ++.+|+ ++.||+|++||+..++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 4578888 455 777776544 4667775443 345566665 3577899998 567888 8889999999997654
Q ss_pred ccc----------cCCCCceeeeeEEEEcCCceEEEe--cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEE
Q 014104 184 SVF----------PSREGTFMKGLCMRYFDPEAVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIIS 249 (430)
Q Consensus 184 ~~~----------~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~ 249 (430)
... ..+.+. +..+++.+.+..+++++ .++.+.+|+..+++++..+.+|...|.+++|+|+ ..+++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGP-ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGTEEEEEEEEEEECCSSC-EEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred ceeeeecccccccccccCc-EEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence 321 112222 33455555666666655 4678999999999999999999999999999975 46788
Q ss_pred EeCCCeEEEEeCCCCceeEEEec--CCCCCeEEEEEecC-CCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEe
Q 014104 250 GSSLGSIAISGLSSDQRVATLRS--TDCTGIKTLCYNPC-SRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHL 326 (430)
Q Consensus 250 ~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~ 326 (430)
++.|+.+++||..+.+....+.. .+...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+.+|...+.++. |
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~-~ 256 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI-F 256 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCE-E
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccce-e
Confidence 99999999999998887766654 25568999999996 68999999999999999999999999998887766554 4
Q ss_pred e---CCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEE
Q 014104 327 Q---NDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLA 403 (430)
Q Consensus 327 s---~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 403 (430)
+ |++++|++++.|+.|+|||++++++++.+..+.... .....++.
T Consensus 257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~ 304 (325)
T d1pgua1 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL--------------------------------GNQQVGVV 304 (325)
T ss_dssp EEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG--------------------------------GGCEEEEE
T ss_pred eeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc--------------------------------cCeEEEEE
Confidence 4 789999999999999999999999999987654410 01223444
Q ss_pred Ec-CeEEEEeeCCCeEEEEEe
Q 014104 404 VG-MKKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 404 ~~-~~~l~t~~~Dg~v~vw~~ 423 (430)
++ +.+|++||.||.|+|||+
T Consensus 305 ~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 305 ATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEETTEEEEEETTSCEEEEET
T ss_pred ECCCCEEEEEECCCEEEEEEC
Confidence 43 568999999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-31 Score=244.53 Aligned_cols=278 Identities=16% Similarity=0.184 Sum_probs=211.7
Q ss_pred eEEEEeCCCeEEEEecCCCee-----EEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCC---------
Q 014104 124 LILTGVGDKVMRLWSLEGYKC-----VEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSR--------- 189 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~--------- 189 (430)
..+.+..++...+|+....+. ...+.+.+.+.+++|+|+|++|+++.|+.|++||+.+++.+....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1erja_ 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDP 109 (388)
T ss_dssp TTSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC--------
T ss_pred cccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccc
Confidence 455677888999999765432 234445578899999999999996679999999998776432111
Q ss_pred ----------CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEE
Q 014104 190 ----------EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258 (430)
Q Consensus 190 ----------~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~v 258 (430)
....+..+++.+++..|++|+.||.|++||..+++.+..+.+|...|.++.++++ ..+++++.++.+++
T Consensus 110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~ 189 (388)
T d1erja_ 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189 (388)
T ss_dssp ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred cccccccccCCCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeee
Confidence 1112334566666777999999999999999999999999999999999999965 78999999999999
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCceeeee-------ecCCCceEEEEEeeCCC
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYN-PCSRLVFAGTTAGYASCWDLRTMKSLWET-------RISPNVVYSLQHLQNDT 330 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~v~~l~~~s~~~ 330 (430)
||.++......... +. ...++.+. +++++|++|+.|+.|++||.+++..+..+ .+|.+.|.+++ |+|++
T Consensus 190 ~d~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~-~s~~~ 266 (388)
T d1erja_ 190 WDLRTGQCSLTLSI-ED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV-FTRDG 266 (388)
T ss_dssp EETTTTEEEEEEEC-SS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE-ECTTS
T ss_pred eecccccccccccc-cc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEE-ECCCC
Confidence 99999888777764 44 44555555 57899999999999999999988766544 35788999999 99999
Q ss_pred CeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeE
Q 014104 331 STLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKK 408 (430)
Q Consensus 331 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~ 408 (430)
++|++++.||.|++||+.++............. .......|...|++++| ++++
T Consensus 267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~v~~~~~s~~~~~ 322 (388)
T d1erja_ 267 QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT------------------------CEVTYIGHKDFVLSVATTQNDEY 322 (388)
T ss_dssp SEEEEEETTSEEEEEEC---------------C------------------------EEEEEECCSSCEEEEEECGGGCE
T ss_pred CEEEEEECCCcEEEEeccCCccccccccccccc------------------------eeeecccccceEEEEEECCCCCE
Confidence 999999999999999998776554443322110 01112357789999999 5899
Q ss_pred EEEeeCCCeEEEEEecCCCc
Q 014104 409 VVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 409 l~t~~~Dg~v~vw~~~~~~~ 428 (430)
|++|+.||.|++||+.+++.
T Consensus 323 l~sg~~dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 323 ILSGSKDRGVLFWDKKSGNP 342 (388)
T ss_dssp EEEEETTSEEEEEETTTCCE
T ss_pred EEEEeCCCEEEEEECCCCcE
Confidence 99999999999999998864
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.6e-31 Score=233.64 Aligned_cols=240 Identities=18% Similarity=0.311 Sum_probs=210.5
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
.++++.+|.+.|.++++ +++ ++++++.++.+.+|+....+....+..+ .....+.++++++.++ ++.|+.+++||+
T Consensus 51 ~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 130 (317)
T d1vyhc1 51 FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130 (317)
T ss_dssp CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred EEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeec
Confidence 56688999999999999 455 9999999999999999988877777665 4566799999999998 888999999999
Q ss_pred CCCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-------------
Q 014104 180 NGLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED------------- 244 (430)
Q Consensus 180 ~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~------------- 244 (430)
++++.. +..+... ...+.+.+.+..+++++.|+.|++|++.+++.+..+..|...+.++.++|+
T Consensus 131 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 209 (317)
T d1vyhc1 131 QTGYCVKTFTGHREW-VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 209 (317)
T ss_dssp TTCCEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred ccceeeeEEccCCCc-ceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccce
Confidence 987743 2333332 334555556667999999999999999999999999999999999988652
Q ss_pred --------CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC
Q 014104 245 --------QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 245 --------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
..+++++.|+.|++||+++++.+.++.+ |...|.+++|+|++++|++|+.||.|++||+++++++..+.+|
T Consensus 210 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h 288 (317)
T d1vyhc1 210 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG-HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288 (317)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECC
T ss_pred eeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeC-CCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCC
Confidence 3588999999999999999999999987 8889999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 317 PNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
.+.|++++ |+|++++|++|+.||+|+|||
T Consensus 289 ~~~V~~~~-~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 289 EHFVTSLD-FHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSCEEEEE-ECSSSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEE-EcCCCCEEEEEeCCCeEEEeC
Confidence 99999999 999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.3e-30 Score=228.88 Aligned_cols=242 Identities=18% Similarity=0.227 Sum_probs=198.9
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCC----eeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGY----KCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICI 176 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~v 176 (430)
.+..+.+|.++|.+++| +++ ++++|+.|+.+++|+.... .....+.++...........+..+. ...+.....
T Consensus 89 ~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (340)
T d1tbga_ 89 KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168 (340)
T ss_dssp EEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEE
T ss_pred eEEEEecccccEEeeEeeccceeeeeecccceeecccccccccccccceecccccccccccccccccccccccccccccc
Confidence 57788999999999999 455 9999999999999997653 3444555555555555555555555 888888888
Q ss_pred EEcCCCcccccC-CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC
Q 014104 177 WRRNGLRSVFPS-REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG 254 (430)
Q Consensus 177 wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg 254 (430)
+........... .................+++++.|+.|++||+++++++..+.+|.+.|++++|+|+ +++++|+.|+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~ 248 (340)
T d1tbga_ 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 888776533222 22222223333334455899999999999999999999999999999999999986 8999999999
Q ss_pred eEEEEeCCCCceeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE
Q 014104 255 SIAISGLSSDQRVATLRS-TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 255 ~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
.|++||++....+..+.. .+...|.+++|+|++++|++|+.||.|++||+.+++++..+.+|.+.|++++ |+|++++|
T Consensus 249 ~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~-~s~d~~~l 327 (340)
T d1tbga_ 249 TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG-VTDDGMAV 327 (340)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-ECTTSSCE
T ss_pred eEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEE-EeCCCCEE
Confidence 999999999888777643 2455899999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEcCCCeEEEEE
Q 014104 334 VVGGIDGVLRVLD 346 (430)
Q Consensus 334 ~s~~~dg~i~vwd 346 (430)
++|+.||.|+|||
T Consensus 328 ~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 328 ATGSWDSFLKIWN 340 (340)
T ss_dssp EEEETTSCEEEEC
T ss_pred EEEccCCEEEEeC
Confidence 9999999999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.8e-30 Score=232.98 Aligned_cols=259 Identities=18% Similarity=0.238 Sum_probs=204.5
Q ss_pred CCEeEEEEeccccceeEEEec-CCeEEEEeCCCeEEEEecCCCeeEEeeecCCc---eeEEEEecCCCEEE-EEeCCeEE
Q 014104 101 GRIDIDQWKAHSVGVDQCRMK-RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA---ASLVDFDFDESKIV-GLIGTRIC 175 (430)
Q Consensus 101 ~~~~~~~l~~h~~~v~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~-~~~~~~i~ 175 (430)
....++++.+|.++|++++|+ +++|++|+.|++|++|+....+.......... .....+.+++..++ ++.|+.|+
T Consensus 42 ~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 121 (355)
T d1nexb2 42 NKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121 (355)
T ss_dssp TTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEE
T ss_pred CCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEE
Confidence 345788999999999999995 45999999999999999999887776665432 23356677888887 88999999
Q ss_pred EEEcCCCcccccC----------------------CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCC
Q 014104 176 IWRRNGLRSVFPS----------------------REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHC 233 (430)
Q Consensus 176 vwd~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 233 (430)
+||+.+....... ...+...+....+.+..++++..|+.|++||+.+++.+....++.
T Consensus 122 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~ 201 (355)
T d1nexb2 122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 201 (355)
T ss_dssp EEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred EEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc
Confidence 9999865422110 011122334556667779999999999999999999999999999
Q ss_pred CCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee
Q 014104 234 APVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 234 ~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
..+.++.++++ ..+++++.|+.|++||++++..+..+.+ |...|.+++++ +++|++|+.||.|++||++++...
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~-- 276 (355)
T d1nexb2 202 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK-- 276 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC-CSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--
T ss_pred cccccccccccceeeecccccceEEeeecccccccccccc-ccccccccccc--cceeeeeeccccccccccccccee--
Confidence 99999999975 8999999999999999999999999987 88899999986 479999999999999999887644
Q ss_pred eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEE-EEeccCccee
Q 014104 313 TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSR-CVMDIGSASS 365 (430)
Q Consensus 313 ~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~ 365 (430)
+..|...+.++.++++++.++++| .||.|++||+++|+++.. +..|.+.+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~ 329 (355)
T d1nexb2 277 FSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWS 329 (355)
T ss_dssp EEEECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEE
T ss_pred cccccCCceEEEEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEE
Confidence 456667777777678888877666 589999999999887643 3444444433
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=2.5e-30 Score=236.08 Aligned_cols=236 Identities=14% Similarity=0.165 Sum_probs=192.1
Q ss_pred CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcc----cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee-
Q 014104 152 NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRS----VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC- 225 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~- 225 (430)
+++.+++|+|+++.|+ ++.++.|++||.++++. .+..|.+. +..+++.+++..|++|+.|++|++||+.++..
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~-V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC-EEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCC-EEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 5688999999999998 78889999999987752 23445444 35566777788899999999999999987754
Q ss_pred -eEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCcee---EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEE
Q 014104 226 -SQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRV---ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYAS 300 (430)
Q Consensus 226 -~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 300 (430)
...+.+|...|.+++|+|+ +.+++|+.|+.+++|++...... ......|...|.+++|+|++++|++|+.|+.|+
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~ 166 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR 166 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEE
Confidence 4455678899999999976 89999999999999998765532 233334778999999999999999999999999
Q ss_pred EEeCCCC------------------ceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCc
Q 014104 301 CWDLRTM------------------KSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGS 362 (430)
Q Consensus 301 i~d~~~~------------------~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 362 (430)
+||.... +.+.....|...|.+++ |+|++++|++++.|+.|++||+.+++.+..+..|.
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-- 243 (371)
T d1k8kc_ 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVC-FSANGSRVAWVSHDSTVCLADADKKMAVATLASET-- 243 (371)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEE-ECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--
T ss_pred EEeeccCccccccccccccccccceeeeeeccCccCcEEEEE-eecccccccccccCCcceEEeeecccceeeeeccc--
Confidence 9998642 34455677889999999 99999999999999999999999999998887644
Q ss_pred ceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCC
Q 014104 363 ASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYS 426 (430)
Q Consensus 363 ~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~ 426 (430)
.+|++++| ++++|++ +.|+.+++|..+..
T Consensus 244 ----------------------------------~~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 244 ----------------------------------LPLLAVTFITESSLVAA-GHDCFPVLFTYDSA 274 (371)
T ss_dssp ----------------------------------CCEEEEEEEETTEEEEE-ETTSSCEEEEEETT
T ss_pred ----------------------------------ccceeeeecCCCCEEEE-EcCCceEEEEeeCC
Confidence 47888888 4665655 55788888876543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.3e-30 Score=228.69 Aligned_cols=286 Identities=11% Similarity=0.038 Sum_probs=207.3
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCee----EEeeecCCceeEEEEecCCC-EEE-EEeCCeE
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKC----VEEYSLPNAASLVDFDFDES-KIV-GLIGTRI 174 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~i 174 (430)
+.++.+++|.+.|++|+| |++ +|++|+.||+|+|||+.++.. ...+.+...+..++|++++. .|+ ++.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 356677899999999999 555 999999999999999876533 33334556788899999765 455 7889999
Q ss_pred EEEEcCCCccccc--CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeE----EeecCC--CCeEEEEec-CCC
Q 014104 175 CIWRRNGLRSVFP--SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQ----IIRMHC--APVTSLSLS-EDQ 245 (430)
Q Consensus 175 ~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~--~~i~~~~~~-~~~ 245 (430)
++|+......... ..................+++++.++.+++||++++.... ....+. .....+.+. .+.
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 9999987764322 2222333334444556669999999999999986554322 222222 223344444 347
Q ss_pred EEEEEeCCCeEEEEeCCCCceeEEE--ecCCCCCeEEEEEe-cCCCEEEEEeCCCeEEEEeCCCCcee------------
Q 014104 246 LIISGSSLGSIAISGLSSDQRVATL--RSTDCTGIKTLCYN-PCSRLVFAGTTAGYASCWDLRTMKSL------------ 310 (430)
Q Consensus 246 ~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~------------ 310 (430)
.+++++.|+.|++||+...+..... .......+.+..+. +++..+++++.||.+.+|+.......
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence 8999999999999999876543222 11133455555554 56789999999999999998643211
Q ss_pred ---eeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcc
Q 014104 311 ---WETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCC 387 (430)
Q Consensus 311 ---~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~ 387 (430)
.....|...+.+++ |+|++++|++|+.||.|++||+++++.+.++..
T Consensus 242 ~~~~~~~~~~~~v~~l~-~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~----------------------------- 291 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIE-FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK----------------------------- 291 (342)
T ss_dssp CCCTTCCSSCCCEEEEE-ECTTTCCEEEEETTSCEEEEETTTTEEEEECCC-----------------------------
T ss_pred eeccCCCcccccceeEE-ecCCccEEEEECCCCEEEEEECCCCcEEEEecC-----------------------------
Confidence 11234566789999 999999999999999999999999988877643
Q ss_pred cccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEec
Q 014104 388 IDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFN 424 (430)
Q Consensus 388 ~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~ 424 (430)
.|...+.+++++++++++|+.|+.+++|...
T Consensus 292 ------~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~ 322 (342)
T d1yfqa_ 292 ------FNEDSVVKIACSDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ------CSSSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred ------CCCCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence 2345678888899999999999988888653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=3.6e-29 Score=221.13 Aligned_cols=247 Identities=11% Similarity=0.034 Sum_probs=190.7
Q ss_pred CeeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCC-ceEEEecCCeEEEE
Q 014104 142 YKCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDP-EAVVGCEDGTARVF 218 (430)
Q Consensus 142 ~~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~vw 218 (430)
|+..+.+.+| ..+.+++|+|++++|+ ++.|+.|++||+++++........+...+.++.+.+. .+++++.|+.+++|
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 81 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEe
Confidence 5677888887 5678899999999999 8899999999999887554443333333444444332 38888899999999
Q ss_pred ECCCCee---eEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 219 DMYSRKC---SQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 219 d~~~~~~---~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
+...... ......+...+.+++++++..+++++.++.+.+|+.. +... .. ....+.+++|+|++++|++|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~--~~~~-~~--~~~~~~~~~~s~~~~~l~~g~~ 156 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG--KLTE-VP--ISYNSSCVALSNDKQFVAVGGQ 156 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT--EEEE-EE--CSSCEEEEEECTTSCEEEEEET
T ss_pred ccCCccccccccccccccccccccccccccccccccccccccccccc--cccc-cc--cccccccccccccccccccccc
Confidence 9865432 2233456788999999987444555567899999954 3322 22 3446899999999999999999
Q ss_pred CCeEEEEeCCCCceee-eeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceE
Q 014104 296 AGYASCWDLRTMKSLW-ETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVI 374 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~-~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v 374 (430)
||.|++||+++++... ....|...|.+++ ++|++++|++++.|+.|++||+.++..+.....
T Consensus 157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~---------------- 219 (299)
T d1nr0a2 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVA-FSNNGAFLVATDQSRKVIPYSVANNFELAHTNS---------------- 219 (299)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSSCEEEEE-ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCC----------------
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc----------------
Confidence 9999999998876543 3457889999999 999999999999999999999987765433221
Q ss_pred EEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCC
Q 014104 375 ERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
..+|...|++++| ++++|++|+.||.|++||+.+++
T Consensus 220 -----------------~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 220 -----------------WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257 (299)
T ss_dssp -----------------CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred -----------------ccccccccccccccccccceEEEcCCCEEEEEECCCCC
Confidence 2457789999999 58999999999999999998764
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=9.1e-29 Score=221.79 Aligned_cols=283 Identities=19% Similarity=0.272 Sum_probs=223.4
Q ss_pred EecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeE
Q 014104 137 WSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTA 215 (430)
Q Consensus 137 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i 215 (430)
|+..+.+..+.+++|......+++++|++|+ ++.|+.|++||+.+++.+.. ..+|...+.++.+.+..+++|+.|+.+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~-~~~h~~~V~~v~~~~~~l~s~s~D~~~ 79 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT-LVGHTGGVWSSQMRDNIIISGSTDRTL 79 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE-CCCCSSCEEEEEEETTEEEEEETTSCE
T ss_pred CCCCCCCcCEEECCcCCceEEEEEECCCEEEEEeCCCeEEEEECCCCCEEEE-EeCCCCCEEEEEeCCCccccceecccc
Confidence 6666777888899986544446888999999 88999999999998875322 223334456667677789999999999
Q ss_pred EEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC
Q 014104 216 RVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT 295 (430)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 295 (430)
++|+............+...+...... +..+..+..|+.+.+|+..+++....+.. ... ......+....+++++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~ 155 (342)
T d2ovrb2 80 KVWNAETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMG-HVA--AVRCVQYDGRRVVSGAY 155 (342)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEEC-CSS--CEEEEEECSSCEEEEET
T ss_pred cccccccccceecccccceeEeeeecc-cccccccccceeEEEeecccccceeeeec-ccc--cceeeccccceeeeecC
Confidence 999998887777776666666665553 45778889999999999999988887764 222 23344556778999999
Q ss_pred CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcc--------eeee
Q 014104 296 AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSA--------SSSS 367 (430)
Q Consensus 296 dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~--------~~~~ 367 (430)
|+.|++||.+..+.+..+.+|...+... ++++.++++++.||.|++||+++++++..+..|...+ .+++
T Consensus 156 d~~i~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 232 (342)
T d2ovrb2 156 DFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVS 232 (342)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEE---EECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEE
T ss_pred CCeEEEeecccceeeEEEcCcccccccc---cCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEE
Confidence 9999999999999999999988766654 4578999999999999999999999999888776544 6788
Q ss_pred ccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcCeEEEEeeCCCeEEEEEecCCCc
Q 014104 368 NKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 368 ~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
++.|+.+.+|+.........+ .....|...+.+++++++++++|+.||+|++||+.+++.
T Consensus 233 ~s~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~ 292 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQCLQTL-QGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEF 292 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEE-CSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred EcCCCEEEEEecccccccccc-cccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCE
Confidence 899999988876554332222 223457788999999999999999999999999998864
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.4e-29 Score=224.17 Aligned_cols=242 Identities=13% Similarity=0.141 Sum_probs=185.6
Q ss_pred eEEEEeccc-cceeEEEec---CC-eEEEEeCCCeEEEEecCCCeeEE--------eeecC-CceeEEEEecCCCEEE-E
Q 014104 104 DIDQWKAHS-VGVDQCRMK---RG-LILTGVGDKVMRLWSLEGYKCVE--------EYSLP-NAASLVDFDFDESKIV-G 168 (430)
Q Consensus 104 ~~~~l~~h~-~~v~~~~~~---~~-~l~s~~~dg~i~iwd~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~l~-~ 168 (430)
.+..+.+|. ..|++++|+ ++ +|++|+.||+|+|||+..++... .+..+ ..+..++|+++++.++ +
T Consensus 54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 133 (325)
T d1pgua1 54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133 (325)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence 466778885 689999993 34 99999999999999987643322 22233 4567899999999988 4
Q ss_pred Ee--CCeEEEEEcCCCcccc--cCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEe---ecCCCCeEEEE
Q 014104 169 LI--GTRICIWRRNGLRSVF--PSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQII---RMHCAPVTSLS 240 (430)
Q Consensus 169 ~~--~~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~~~~ 240 (430)
+. ++.+.+|+.++++.+. ..+... ...+++.+.++. +++++.|+.+++||..+.+....+ ..|...|.+++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~ 212 (325)
T d1pgua1 134 GEGRDNFGVFISWDSGNSLGEVSGHSQR-INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE 212 (325)
T ss_dssp ECCSSCSEEEEETTTCCEEEECCSCSSC-EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred eccccceEEEEeecccccceeeeecccc-cccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence 33 5679999998876443 333333 233555556665 778999999999999888766554 35677899999
Q ss_pred ecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEe---cCCCEEEEEeCCCeEEEEeCCCCceeeeeec
Q 014104 241 LSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYN---PCSRLVFAGTTAGYASCWDLRTMKSLWETRI 315 (430)
Q Consensus 241 ~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 315 (430)
|+|+ .++++++.|+.|++||+++++.+..+.+ |..++..+.|+ |+|++|++++.|+.|+|||+++++++..+..
T Consensus 213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 291 (325)
T d1pgua1 213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIED-DQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL 291 (325)
T ss_dssp ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCB-TTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred eccccceeccccccccceeeeeeccccccccccc-cccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe
Confidence 9974 7899999999999999999999999987 66666555555 6899999999999999999999999988776
Q ss_pred CCCc--eEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 316 SPNV--VYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 316 ~~~~--v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
|... +..+++..+.+.+|++++.||.|++||+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 292 DKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp CTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred cCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 6543 3344422233458999999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.3e-27 Score=209.30 Aligned_cols=237 Identities=17% Similarity=0.239 Sum_probs=193.4
Q ss_pred CEeEEEEeccccceeEEEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 102 RIDIDQWKAHSVGVDQCRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
...+++|.+|.+.|++++|++.+|+||+.|+.|++|++..+............ .....+....++ +..++.+.+|+..
T Consensus 45 ~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (293)
T d1p22a2 45 LECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA-VLHLRFNNGMMVTCSKDRSIAVWDMA 123 (293)
T ss_dssp CCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC-EEEEECCTTEEEEEETTSCEEEEECS
T ss_pred CcEEEEEecCCCCEeeeecccceeecccccccccccccccccccccccccccc-cccccccccceeecccccceeEeecc
Confidence 44788999999999999997779999999999999999998877766654433 344445555555 8899999999998
Q ss_pred CCccc--ccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEE
Q 014104 181 GLRSV--FPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAI 258 (430)
Q Consensus 181 ~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~v 258 (430)
+.... ......+...+.+..+....+++++.|+.|++||+++++.+..+.++...+..+.+++ ..+++++.||.|++
T Consensus 124 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i 202 (293)
T d1p22a2 124 SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRL 202 (293)
T ss_dssp SSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TEEEEEETTSCEEE
T ss_pred ccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEcccccccccccCCC-CeEEEecCCCEEEE
Confidence 76532 2222333334456666777799999999999999999999999999999999888854 58999999999999
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCC---------CceeeeeecCCCceEEEEEeeCC
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRT---------MKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
||+++.+.+..+.. +...+.. +++++.+|++|+.||.|++||+.. ...+..+.+|.+.|++++ + +
T Consensus 203 ~d~~~~~~~~~~~~-~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~-~--d 276 (293)
T d1p22a2 203 WDIECGACLRVLEG-HEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQ-F--D 276 (293)
T ss_dssp EETTTCCEEEEECC-CSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEE-E--C
T ss_pred Eecccceeeeeecc-cceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEE-E--c
Confidence 99999999988876 6666665 556789999999999999999754 245677889999999988 6 5
Q ss_pred CCeEEEEcCCCeEEEEE
Q 014104 330 TSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd 346 (430)
+.+|++|+.||+|++||
T Consensus 277 ~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 277 EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp SSCEEECCSSSEEEEEC
T ss_pred CCEEEEEecCCEEEEeC
Confidence 67899999999999998
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.6e-27 Score=217.68 Aligned_cols=249 Identities=12% Similarity=0.095 Sum_probs=173.2
Q ss_pred ceeEEEEecCCCEEE-EEeCCeEEEEEcCCCcccc--------cCCCCce--eeeeEEEEcCC----ceEEEecCCeEEE
Q 014104 153 AASLVDFDFDESKIV-GLIGTRICIWRRNGLRSVF--------PSREGTF--MKGLCMRYFDP----EAVVGCEDGTARV 217 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~~--------~~~~~~~--~~~~~~~~~~~----~l~~~~~dg~i~v 217 (430)
.+..++ ..+++++ ++.|+.|++||..+..... ..+.... ........... .+++++.||.|++
T Consensus 16 ~I~~v~--~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~ 93 (393)
T d1sq9a_ 16 DIFSVS--ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 93 (393)
T ss_dssp CEEEEE--ECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred ccEEEE--EeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEE
Confidence 344454 4567888 8899999999987654211 1111111 11111122222 2778999999999
Q ss_pred EECCCCeeeEEe----------ecCCCCeEEEEecCC------CEEEEEeCCCeEEEEeCCCCc---------------e
Q 014104 218 FDMYSRKCSQII----------RMHCAPVTSLSLSED------QLIISGSSLGSIAISGLSSDQ---------------R 266 (430)
Q Consensus 218 wd~~~~~~~~~~----------~~~~~~i~~~~~~~~------~~l~~~~~dg~i~vwd~~~~~---------------~ 266 (430)
|++........+ ..+...+..+++.++ .++++++.||.+++||+.... .
T Consensus 94 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 173 (393)
T d1sq9a_ 94 YRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173 (393)
T ss_dssp EEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred EEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceec
Confidence 997544321111 123456777777642 578999999999999974321 0
Q ss_pred eEEEe--cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee------eecCCCceEEEEEeeCCCCeEEEEcC
Q 014104 267 VATLR--STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE------TRISPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 267 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~------~~~~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
..... ..+...+.+++|+|++ +|++|+.|++|++||+++++++.. +.+|..+|.+++ |+|+|++|++|+.
T Consensus 174 ~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~-~spdg~~l~sgs~ 251 (393)
T d1sq9a_ 174 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK-FSPQGSLLAIAHD 251 (393)
T ss_dssp EEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE-ECSSTTEEEEEEE
T ss_pred ccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcc-cccccceeeeecC
Confidence 11111 1134468999999997 889999999999999999887654 456889999999 9999999999998
Q ss_pred CC---eEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEee
Q 014104 339 DG---VLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTH 413 (430)
Q Consensus 339 dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~ 413 (430)
|+ .|++||+++++++..+...... ........+|...|++++| |+++|+|||
T Consensus 252 D~t~~~i~lwd~~~g~~~~~l~~~~~~-----------------------~~~~~~~~gH~~~V~~l~fspd~~~l~S~s 308 (393)
T d1sq9a_ 252 SNSFGCITLYETEFGERIGSLSVPTHS-----------------------SQASLGEFAHSSWVMSLSFNDSGETLCSAG 308 (393)
T ss_dssp ETTEEEEEEEETTTCCEEEEECBC-------------------------------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred CCCcceeeecccccceeeeeecccccc-----------------------ccceeeeecccCceeeeccCCCCCeeEEEC
Confidence 86 5999999999999888643220 0112233579999999999 689999999
Q ss_pred CCCeEEEEEecCCCc
Q 014104 414 NSKYIRLWKFNYSDK 428 (430)
Q Consensus 414 ~Dg~v~vw~~~~~~~ 428 (430)
.|++|+|||+++++.
T Consensus 309 ~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 309 WDGKLRFWDVKTKER 323 (393)
T ss_dssp TTSEEEEEETTTTEE
T ss_pred CCCEEEEEECCCCCE
Confidence 999999999998753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=6.9e-27 Score=205.07 Aligned_cols=230 Identities=17% Similarity=0.183 Sum_probs=185.8
Q ss_pred EeccccceeEEEecCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccc
Q 014104 108 WKAHSVGVDQCRMKRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVF 186 (430)
Q Consensus 108 l~~h~~~v~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~ 186 (430)
..+|...|.++++.++ .+++++.|+++++|++...+ ....+..+++.+++..++.+.++.+.+|+..+++...
T Consensus 42 ~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (287)
T d1pgua2 42 HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK 115 (287)
T ss_dssp ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCCCCCEEEEEecCCCeEEEEeeccccccccccccc------cccceeeeeeccCCceEEEeecccceeeeccceeeee
Confidence 4689999999999655 89999999999999976422 2345666788888888888889999999998877543
Q ss_pred cCCCCceeeeeEEEEcCCceEEEecCC-eEEEEECCCCeeeEEee-cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCC
Q 014104 187 PSREGTFMKGLCMRYFDPEAVVGCEDG-TARVFDMYSRKCSQIIR-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~ 263 (430)
...... ...++.+.+..+++++.++ .+++|++...+....+. .|.+++++++|+|+ .+|++|+.||.|++||+.+
T Consensus 116 ~~~~~~--~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~ 193 (287)
T d1pgua2 116 SVRLNS--PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 193 (287)
T ss_dssp EEECSS--CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eccccc--eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecc
Confidence 322221 2356777777777777764 79999997766555544 47789999999987 8999999999999999999
Q ss_pred CceeEEEecCCCCCeEEEEEecC----------CCEEEEEeCCCeEEEEeCCC-CceeeeeecCCCceEEEEEeeCCCCe
Q 014104 264 DQRVATLRSTDCTGIKTLCYNPC----------SRLVFAGTTAGYASCWDLRT-MKSLWETRISPNVVYSLQHLQNDTST 332 (430)
Q Consensus 264 ~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~v~~l~~~s~~~~~ 332 (430)
++........|...|.+++|+|. +.+|++|+.|++|++||+++ .+.+..+.+|.+.|++++ |+|++ .
T Consensus 194 ~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~-~~~~~-~ 271 (287)
T d1pgua2 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL-WETPS-T 271 (287)
T ss_dssp TEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE-EEETT-E
T ss_pred cccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEE-ECCCC-E
Confidence 88766544458889999999875 46899999999999999977 556777789999999998 88876 5
Q ss_pred EEEEcCCCeEEEEEc
Q 014104 333 LVVGGIDGVLRVLDQ 347 (430)
Q Consensus 333 l~s~~~dg~i~vwd~ 347 (430)
|++++.||.|++||+
T Consensus 272 l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 272 LVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEEECCCeEEEEEE
Confidence 889999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=3.5e-26 Score=206.82 Aligned_cols=297 Identities=13% Similarity=0.068 Sum_probs=214.5
Q ss_pred EEe-c-CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCC--eEEEEEcCCCcccccCCCC
Q 014104 118 CRM-K-RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGT--RICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 118 ~~~-~-~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~--~i~vwd~~~~~~~~~~~~~ 191 (430)
-.| | || ++|+++ +|.|.+||..+++.++. .+...+..++|+|||+.|+ ++.+. .|++||.++++........
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~ 85 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENL 85 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCC
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCC
Confidence 446 4 67 777665 57999999998877664 4556788899999999988 55543 6999999998754433334
Q ss_pred ceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE----------eCCCeEEEEe
Q 014104 192 TFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG----------SSLGSIAISG 260 (430)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~----------~~dg~i~vwd 260 (430)
.....+++.+++..+++++.++.+++|++.+++....+..|...+.+++|+|+ ++|+.+ ..++.+++||
T Consensus 86 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d 165 (360)
T d1k32a3 86 GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD 165 (360)
T ss_dssp CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred ceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeec
Confidence 44556778888888999999999999999999999999999999999999986 677644 3456799999
Q ss_pred CCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCce-------eeeeecCCCceEEEEEeeCCCCeE
Q 014104 261 LSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKS-------LWETRISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~v~~l~~~s~~~~~l 333 (430)
+.+++...... +...+..++|+|+|+.|++++.++.+.+||...... ...+..|...+..+. +++++..+
T Consensus 166 ~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~ 242 (360)
T d1k32a3 166 MEGRKIFAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK-LVPRSMTS 242 (360)
T ss_dssp TTTTEEEECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG-CCCGGGSC
T ss_pred cccCceeeecc--cccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccce-ECCCcCcc
Confidence 99887655444 566889999999999999999999999999865432 223334444455555 77777766
Q ss_pred EEEcCCC-----eEEEEEcCCCceEEEEEeccCcc-------------eeeeccCCceEEEeecccccCCcccccCCCCC
Q 014104 334 VVGGIDG-----VLRVLDQNTGEVLSRCVMDIGSA-------------SSSSNKVSGVIERNEGRRLSAGCCIDRIPKTI 395 (430)
Q Consensus 334 ~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~-------------~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h 395 (430)
+++..+. .+..+++..+.. ..+..+.+.. .++.++.++.+.+++...- +. ..|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----~~----~~~ 313 (360)
T d1k32a3 243 EAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----KV----TEV 313 (360)
T ss_dssp CCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC----CE----EEE
T ss_pred cccceeecccccceeecccCcCce-eEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCC----eE----EEe
Confidence 6554332 244444444432 2333333322 3455666777777664321 11 124
Q ss_pred CCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 396 RPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 396 ~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
...|.+++| ||++|++++.||.|++||++.++.
T Consensus 314 ~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~ 348 (360)
T d1k32a3 314 KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348 (360)
T ss_dssp EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTS
T ss_pred cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCc
Confidence 456888888 799999999999999999988753
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=5.5e-24 Score=187.28 Aligned_cols=262 Identities=13% Similarity=0.127 Sum_probs=204.5
Q ss_pred EEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEc
Q 014104 125 ILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYF 202 (430)
Q Consensus 125 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 202 (430)
.++++.|++|.+||+++++.++++.....+..++|+|||++|+ +..++.|.+||+.+++.+...........+.+...
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~ 84 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD 84 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccc
Confidence 3567789999999999999999999887788899999999886 44689999999999886543333333344555555
Q ss_pred CCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeE
Q 014104 203 DPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIK 279 (430)
Q Consensus 203 ~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 279 (430)
+.. ++++..++.+.+|+..+++....+..+ ....++.++|+ . .++++..++.+.+|+..++..+..+. ....+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 161 (301)
T d1l0qa2 85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPK 161 (301)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEE
T ss_pred cccccccccccceeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecc--cCCCce
Confidence 555 556677889999999999988888744 56788999976 4 45666778999999999999988887 445789
Q ss_pred EEEEecCCCEEEEEeCC-CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEc---CCCeEEEEEcCCCceEEE
Q 014104 280 TLCYNPCSRLVFAGTTA-GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGG---IDGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 280 ~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~---~dg~i~vwd~~~~~~~~~ 355 (430)
.+.++|+++.+++++.+ +.+.+|+....+.......+ ..+..++ +++++..++.++ .++.|++||+.+++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~ 239 (301)
T d1l0qa2 162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIA-VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITAR 239 (301)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEE-ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEE
T ss_pred EEEeeccccceeeecccccccccccccceeeeeccccc-CCcceee-ccccccccccccccceeeeeeeeecCCCeEEEE
Confidence 99999999988877655 66778888777766665544 5567787 899999876654 347899999999998887
Q ss_pred EEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEE-EEeeCCCeEEEEEecCCCc
Q 014104 356 CVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKV-VTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 356 ~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l-~t~~~Dg~v~vw~~~~~~~ 428 (430)
+..+ ..+.+++| ||++| ++++.|++|++||+++++.
T Consensus 240 ~~~~-------------------------------------~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~ 278 (301)
T d1l0qa2 240 IPVG-------------------------------------PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278 (301)
T ss_dssp EECC-------------------------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred EcCC-------------------------------------CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeE
Confidence 7642 24677777 57765 7888899999999998763
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=3.1e-24 Score=191.63 Aligned_cols=259 Identities=12% Similarity=0.047 Sum_probs=181.3
Q ss_pred eeEEeeecC-CceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--cc---CCCCceeeeeEEEEcCC-ceEEEecCCe
Q 014104 143 KCVEEYSLP-NAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FP---SREGTFMKGLCMRYFDP-EAVVGCEDGT 214 (430)
Q Consensus 143 ~~~~~~~~~-~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~---~~~~~~~~~~~~~~~~~-~l~~~~~dg~ 214 (430)
+.+...+.| +.+..++|+|++++|+ ++.|++|++||++++... +. .+... +..+++.+.++ .+++|+.||.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~-V~~v~f~~~~~~~l~sg~~d~~ 80 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP-LLCCNFIDNTDLQIYVGTVQGE 80 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSC-EEEEEEEESSSEEEEEEETTSC
T ss_pred CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCC-EEEEEEeCCCCCEEEEcccccc
Confidence 344444555 5688899999999999 888999999999765431 11 23333 34455665555 4899999999
Q ss_pred EEEEECCCCeeeEEeecCCCCeE-EEEec-CCCEEEEEeCCCeEEEEeCCCCceeEEEe----cC-CCCCeEEEEEecCC
Q 014104 215 ARVFDMYSRKCSQIIRMHCAPVT-SLSLS-EDQLIISGSSLGSIAISGLSSDQRVATLR----ST-DCTGIKTLCYNPCS 287 (430)
Q Consensus 215 i~vwd~~~~~~~~~~~~~~~~i~-~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~-~~~~v~~~~~~~~~ 287 (430)
|++|++..+........+..... ...+. .+..+++++.++.+++||++++....... .. .......+.+.+.+
T Consensus 81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (342)
T d1yfqa_ 81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS 160 (342)
T ss_dssp EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence 99999988877766665544433 33333 34899999999999999987544332222 11 12245567778899
Q ss_pred CEEEEEeCCCeEEEEeCCCCceeee---eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEE------EEEe
Q 014104 288 RLVFAGTTAGYASCWDLRTMKSLWE---TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS------RCVM 358 (430)
Q Consensus 288 ~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~ 358 (430)
..+++++.|+.|++||++..+.... ...+...+.+...++.++..+++++.||.+.+|+........ .+..
T Consensus 161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~ 240 (342)
T d1yfqa_ 161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence 9999999999999999987654433 223334555655466778899999999999999987432211 1111
Q ss_pred ccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCcC
Q 014104 359 DIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDKY 429 (430)
Q Consensus 359 ~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~~ 429 (430)
+. .......|...|++++| ++++|+||+.||.|+|||+++++++
T Consensus 241 ~~---------------------------~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l 286 (342)
T d1yfqa_ 241 HR---------------------------LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286 (342)
T ss_dssp CC---------------------------CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEE
T ss_pred ee---------------------------eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEE
Confidence 00 01112457778999999 5899999999999999999987643
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=2.7e-23 Score=192.61 Aligned_cols=276 Identities=10% Similarity=-0.009 Sum_probs=187.6
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--cc--CCCCceee--e
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FP--SREGTFMK--G 196 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~--~~~~~~~~--~ 196 (430)
++++++.||+|+|||+.+++.+.++..+..+..++|+|||++++ ++.|+.+++||+++++.. .. ...++... .
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s 113 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESS 113 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEe
Confidence 66888899999999999999999999988888899999999998 778999999999988632 11 11222111 1
Q ss_pred eEEEEcCCce-EEEecCCeEEEEECCCCeeeEEeecCCCCe-----------EEEEecCC-CE-EEEEeCCCeEEEEeCC
Q 014104 197 LCMRYFDPEA-VVGCEDGTARVFDMYSRKCSQIIRMHCAPV-----------TSLSLSED-QL-IISGSSLGSIAISGLS 262 (430)
Q Consensus 197 ~~~~~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i-----------~~~~~~~~-~~-l~~~~~dg~i~vwd~~ 262 (430)
..+.+++..+ +++..++.+.+||..+++++..+..|...+ ..+..+++ .. +.+....+.+.+++..
T Consensus 114 ~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~ 193 (426)
T d1hzua2 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193 (426)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec
Confidence 2223456665 555688999999999998888776654433 33444433 22 2233334555555555
Q ss_pred CCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCCC----------------------------------
Q 014104 263 SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRTM---------------------------------- 307 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~---------------------------------- 307 (430)
.+.........+...+..+.|+|++++++++.. +..+.+++..++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (426)
T d1hzua2 194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273 (426)
T ss_dssp SSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT
T ss_pred cccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC
Confidence 444322222226668889999999998876643 344556655433
Q ss_pred --------------------ceeeeeecCCCceEEEEEeeCCCCeEEE-------EcCCCeEEEEEcCCCceEEEEEecc
Q 014104 308 --------------------KSLWETRISPNVVYSLQHLQNDTSTLVV-------GGIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 308 --------------------~~~~~~~~~~~~v~~l~~~s~~~~~l~s-------~~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
+....+.+|...+..++ |+|++++|++ ++.|++|+|||+.+++...++..+.
T Consensus 274 ~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~-~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~ 352 (426)
T d1hzua2 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIK-THPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA 352 (426)
T ss_dssp TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEE-CCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred CCceEEEeeccccccccccceEeEEEecCCCceeEEE-cCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence 23334566777788888 9999999884 4567889999999888776664322
Q ss_pred CcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEE-EEe----eCCCeEEEEEecCCC
Q 014104 361 GSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKV-VTT----HNSKYIRLWKFNYSD 427 (430)
Q Consensus 361 ~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l-~t~----~~Dg~v~vw~~~~~~ 427 (430)
. ... ...|...|..++| ||+++ +++ +.||.|+|||.++.+
T Consensus 353 ~--------------------------~~~-~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 353 E--------------------------WAD-LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp H--------------------------HHC-CCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred h--------------------------hcc-cCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 1 000 1234557888888 67765 442 468999999998875
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.92 E-value=1.8e-22 Score=186.82 Aligned_cols=297 Identities=8% Similarity=-0.047 Sum_probs=194.7
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcCCCccc--ccCCCCceeeeeE--
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRNGLRSV--FPSREGTFMKGLC-- 198 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~-- 198 (430)
++++.+.||+|.|||..+++++..+..+..+..++|+|||++++ ++.|+.+.+||+.+++.. .....+.......
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 56899999999999999999999999888888899999999999 778999999999876632 2222221112222
Q ss_pred --EEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecC-----------CCCeEEEEecCC-C-EEEEEeCCCeEEEEeCC
Q 014104 199 --MRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMH-----------CAPVTSLSLSED-Q-LIISGSSLGSIAISGLS 262 (430)
Q Consensus 199 --~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~~~~~~~-~-~l~~~~~dg~i~vwd~~ 262 (430)
+++++.. +++++.+++|++||..+++++..+..| .+....+.++++ . ++++...++.|.+||..
T Consensus 114 ~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~ 193 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYT 193 (432)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETT
T ss_pred cccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEcc
Confidence 2335665 477888999999999999988777543 345567788865 3 56677788999999998
Q ss_pred CCceeEEEecCCCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCCCceeeeeec-----CCCceEEEEEeeCCCCeEEEE
Q 014104 263 SDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRTMKSLWETRI-----SPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 263 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~-----~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+++........+...+..++|+|+|+++++++. ++.+.++|..+++.+..+.. |........ ....+...++.
T Consensus 194 ~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~g~~~~~~ 272 (432)
T d1qksa2 194 DLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV-HPTFGPVWATS 272 (432)
T ss_dssp CSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEE-ETTTEEEEEEE
T ss_pred CCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCccccee-cCCCCceeccc
Confidence 877654443335668899999999998876664 56799999987766544321 112222222 22222222222
Q ss_pred c-CCCeEEEEEcCCC-------ceEEEEEecc----------------------------------CcceeeeccCCceE
Q 014104 337 G-IDGVLRVLDQNTG-------EVLSRCVMDI----------------------------------GSASSSSNKVSGVI 374 (430)
Q Consensus 337 ~-~dg~i~vwd~~~~-------~~~~~~~~~~----------------------------------~~~~~~~~s~d~~v 374 (430)
. .++.|.+|+.... +....+..+. +...+++++.|+.+
T Consensus 273 ~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~d~~~ 352 (432)
T d1qksa2 273 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEF 352 (432)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCE
T ss_pred ccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEechhhcccccCCce
Confidence 2 2455555554321 2233332221 12234444555555
Q ss_pred EEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEEEee-----CCCeEEEEEecCCCc
Q 014104 375 ERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTH-----NSKYIRLWKFNYSDK 428 (430)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~-----~Dg~v~vw~~~~~~~ 428 (430)
++|+.... ..+ ..|...|.+++| ||++++.+. .||.|+|||..+.+.
T Consensus 353 k~w~~~~~------~~l-~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 353 KTLPIAEW------AGI-TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp EEECHHHH------HTC-CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred Eecccccc------ccc-CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 44433211 122 245667889999 688774432 578999999888753
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=1e-20 Score=166.09 Aligned_cols=252 Identities=10% Similarity=0.086 Sum_probs=196.0
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eE-EEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE--EEeCCeEEE
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV--GLIGTRICI 176 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~i~v 176 (430)
.+.++++... +.+..++| ++| +| ++++.++.|++||+.+++.+..+..+.....+.+++++..++ +..++.+.+
T Consensus 22 ~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (301)
T d1l0qa2 22 NKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSV 100 (301)
T ss_dssp TEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeee
Confidence 3455666644 44678888 566 55 567789999999999999999999888888899999999877 445678999
Q ss_pred EEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEe-CC
Q 014104 177 WRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGS-SL 253 (430)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~-~d 253 (430)
|+..+++..............++.+++.. ++++..++.+.+|+..+++.+..+..+ ..+..+.++++ ..+++++ .+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 179 (301)
T d1l0qa2 101 IDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDS 179 (301)
T ss_dssp EETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTT
T ss_pred cccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecccc
Confidence 99998875443333333344566666666 456667889999999999988888744 55788899876 5555555 55
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCC
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDT 330 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~ 330 (430)
+.+.+|+....+....+. ....+..++++++++.+++++. ++.|++||+.+++.+..+..+ ..+.+++ |+|||
T Consensus 180 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va-~spdg 255 (301)
T d1l0qa2 180 MSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIA-VTPDG 255 (301)
T ss_dssp TEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEE-ECTTS
T ss_pred cccccccccceeeeeccc--ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEE-EeCCC
Confidence 778888888777777766 4557889999999998876543 468999999999988887755 4678998 99999
Q ss_pred CeE-EEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 331 STL-VVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 331 ~~l-~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
++| ++++.|+.|++||+.+++.+.++...
T Consensus 256 ~~l~va~~~~~~i~v~D~~t~~~~~~~~vg 285 (301)
T d1l0qa2 256 KKVYVALSFCNTVSVIDTATNTITATMAVG 285 (301)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECS
T ss_pred CEEEEEECCCCeEEEEECCCCeEEEEEeCC
Confidence 987 57788999999999999999998753
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=1.7e-21 Score=173.91 Aligned_cols=261 Identities=9% Similarity=-0.034 Sum_probs=189.2
Q ss_pred CeEEEEeCCCeEEEEecCCCeeEEeeecC---CceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCC--CC----
Q 014104 123 GLILTGVGDKVMRLWSLEGYKCVEEYSLP---NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSR--EG---- 191 (430)
Q Consensus 123 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~--~~---- 191 (430)
.++++++.|++|.|||+.+++.++++..+ ..+..++|+|||++++ ++.++.|.+||+++++.+.... ..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence 38999999999999999999999998764 3356799999999875 4568999999999987543221 11
Q ss_pred ceeeeeEEEEcCCceEEEe------------cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEE
Q 014104 192 TFMKGLCMRYFDPEAVVGC------------EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAI 258 (430)
Q Consensus 192 ~~~~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~v 258 (430)
.....+.+.+++..++++. .++.+.+||..+++....+.. ...+..++++|+ .++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-cCCceEEEEcCCCCEEEEEcC--Ccce
Confidence 1112345555666665554 467899999999998888874 456788999976 67777764 4778
Q ss_pred EeCCCCceeEEEecCCCCCeEEEEEecCCC------------------------EEEEEeCCCeEEEEeCCCCceeee-e
Q 014104 259 SGLSSDQRVATLRSTDCTGIKTLCYNPCSR------------------------LVFAGTTAGYASCWDLRTMKSLWE-T 313 (430)
Q Consensus 259 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~------------------------~l~~~~~dg~i~i~d~~~~~~~~~-~ 313 (430)
||..+++....+... . ......++|++. ....+..++.+.+||..+++.... +
T Consensus 159 ~d~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQ-S-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV 236 (337)
T ss_dssp EETTTTEEEEEECST-T-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE
T ss_pred eeeecCcEEEEeecC-C-ccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe
Confidence 999999888877642 1 111112222221 111122345688999988776543 4
Q ss_pred ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCC
Q 014104 314 RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPK 393 (430)
Q Consensus 314 ~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~ 393 (430)
..+...+..+. ++|++.+++++ ++.|++||+.+++.+..+..
T Consensus 237 ~~~~~~~~~~~-~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~----------------------------------- 278 (337)
T d1pbyb_ 237 RIMDVFYFSTA-VNPAKTRAFGA--YNVLESFDLEKNASIKRVPL----------------------------------- 278 (337)
T ss_dssp EECSSCEEEEE-ECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC-----------------------------------
T ss_pred cCCCcceEEEE-ecccceEEEEc--cccEEEEECCCCcEEEEEcC-----------------------------------
Confidence 45666777777 89999988766 58999999999999888753
Q ss_pred CCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 394 TIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 394 ~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
...+.+++| ||++|++++.|+.|+|||.++++.
T Consensus 279 --~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~ 313 (337)
T d1pbyb_ 279 --PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313 (337)
T ss_dssp --SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCE
T ss_pred --CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcE
Confidence 125677887 688899999999999999998764
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.89 E-value=2e-22 Score=181.89 Aligned_cols=268 Identities=11% Similarity=0.012 Sum_probs=192.1
Q ss_pred eEEEEec-CCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCC--eEEEEECCCCeeeEEeec
Q 014104 155 SLVDFDF-DESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDG--TARVFDMYSRKCSQIIRM 231 (430)
Q Consensus 155 ~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~ 231 (430)
....|+| ||++++....|.|++||++++......+... ...++|+++++.|++++.+. .|++||.++++.. .+..
T Consensus 6 ~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~-v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~ 83 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEE 83 (360)
T ss_dssp GEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSC-EEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCC
T ss_pred hcccccCCCCCEEEEEECCeEEEEECCCCcEEEccCCCC-EEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeC
Confidence 3467999 9999998888999999999887665555444 45677888888887766553 7999999877654 5667
Q ss_pred CCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe----------CCCeEE
Q 014104 232 HCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT----------TAGYAS 300 (430)
Q Consensus 232 ~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~ 300 (430)
|...|.+++|+|+ +++++++.++.+++|++.+++....+.. +...+.+++|+|+|++|+.+. .++.++
T Consensus 84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCceEEeeeecccccccceeccccccccccccccceeeeeec-ccccccchhhccceeeeeeeccccccceeecccccee
Confidence 9999999999987 8999999999999999999998888876 777899999999999998653 345699
Q ss_pred EEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCc-------eEEEEEeccCcceeeeccCCce
Q 014104 301 CWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGE-------VLSRCVMDIGSASSSSNKVSGV 373 (430)
Q Consensus 301 i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~s~d~~ 373 (430)
+||+.+++.... ..+...+..+. ++|+|++|++++.++.+.+||..... ....+..+......+..++++.
T Consensus 163 v~d~~~~~~~~~-~~~~~~~~~~~-~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 240 (360)
T d1k32a3 163 VYDMEGRKIFAA-TTENSHDYAPA-FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSM 240 (360)
T ss_dssp EEETTTTEEEEC-SCSSSBEEEEE-ECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGG
T ss_pred eeccccCceeee-ccccccccccc-ccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcC
Confidence 999998766543 44567788888 99999999999999999999976543 2344445555444555555553
Q ss_pred EEEeeccccc-CCcccccC---------CCCCCCCeeEEEE-----cCeEEEEeeCCCeEEEEEecCCC
Q 014104 374 IERNEGRRLS-AGCCIDRI---------PKTIRPPITCLAV-----GMKKVVTTHNSKYIRLWKFNYSD 427 (430)
Q Consensus 374 v~~~~~~~~~-~~~~~~~~---------~~~h~~~v~~v~~-----~~~~l~t~~~Dg~v~vw~~~~~~ 427 (430)
.......... ....+..+ ...+...+..+.+ ++.++++++.|+.|++||+.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 309 (360)
T d1k32a3 241 TSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 309 (360)
T ss_dssp SCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred cccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCe
Confidence 2110000000 00000000 0112233333333 13457888899999999998765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=4.7e-21 Score=171.59 Aligned_cols=268 Identities=10% Similarity=0.006 Sum_probs=189.0
Q ss_pred EEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCC
Q 014104 118 CRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREG 191 (430)
Q Consensus 118 ~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~ 191 (430)
+++ +++ ++++++.|++|.+||+.+++.++++..+ ..+..++|+|||++++ +..++.|.+||+.+++.+......
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 345 344 9999999999999999999999988754 3466899999999886 446899999999998754322111
Q ss_pred c-------eeeeeEEEEcCCceEEEe------------cCCeEEEEECCCCeeeEEeecC--CCCeEEEEecCCCEEEEE
Q 014104 192 T-------FMKGLCMRYFDPEAVVGC------------EDGTARVFDMYSRKCSQIIRMH--CAPVTSLSLSEDQLIISG 250 (430)
Q Consensus 192 ~-------~~~~~~~~~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~--~~~i~~~~~~~~~~l~~~ 250 (430)
. ....+.+.+++..+++++ .++.+.+||..+++....+..+ ...+..+.++++..++..
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe
Confidence 0 122355566666665554 4778999998887765544332 234556666666545544
Q ss_pred eCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCE--------------------------EEEEeCCCeEEEEeC
Q 014104 251 SSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRL--------------------------VFAGTTAGYASCWDL 304 (430)
Q Consensus 251 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------------l~~~~~dg~i~i~d~ 304 (430)
+ +.+.+||+.+++.+..+.. ...+..+.++|++.. ++++..+..+.+||.
T Consensus 162 ~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 162 G--PDIYKMDVKTGKYTVALPL--RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp S--SSEEEECTTTCCEEEEECS--TTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred C--CcceEEEccCCCEEEEEec--CCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEEC
Confidence 3 5689999999999888764 223334444444432 233344556888888
Q ss_pred CCCceeee-eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeeccccc
Q 014104 305 RTMKSLWE-TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLS 383 (430)
Q Consensus 305 ~~~~~~~~-~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~ 383 (430)
.++..... ...|...+..+. +++++.+++... ++.|.+||..+++.+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~------------------------ 291 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFTGL-RSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD------------------------ 291 (346)
T ss_dssp TTCCEEEEEEEECSSCEEEEE-ECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS------------------------
T ss_pred CCCceEEEEeecccceeEEEE-EeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCC------------------------
Confidence 87765543 456677788887 788888887765 468999999999988877531
Q ss_pred CCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 384 AGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 384 ~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
..+.+++| ||++|++++.|+.|+|||+++++.
T Consensus 292 -------------~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 292 -------------HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325 (346)
T ss_dssp -------------SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred -------------CCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCE
Confidence 24667777 688899999999999999998764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.85 E-value=1e-18 Score=161.50 Aligned_cols=256 Identities=12% Similarity=0.088 Sum_probs=165.7
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEE--eeecCCce----eEEEEecCCCEEE--EEeC
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVE--EYSLPNAA----SLVDFDFDESKIV--GLIG 171 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~----~~~~~~~~~~~l~--~~~~ 171 (430)
...+.++..|. .+..++| ||| ++++++.|++|++||+.+++... .+...... ...+|+|||++++ +..+
T Consensus 52 ~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~ 130 (426)
T d1hzua2 52 KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP 130 (426)
T ss_dssp CSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred CcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC
Confidence 34677888875 5899999 677 89999999999999999887543 34333222 2355678999876 5578
Q ss_pred CeEEEEEcCCCcccccC--CCC----------ceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeee-EEeecCCCCeE
Q 014104 172 TRICIWRRNGLRSVFPS--REG----------TFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCS-QIIRMHCAPVT 237 (430)
Q Consensus 172 ~~i~vwd~~~~~~~~~~--~~~----------~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~-~~~~~~~~~i~ 237 (430)
+.+.+||.+++...... +.. .....+....++..++ +....+.+.+++...+... .....+...+.
T Consensus 131 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
T d1hzua2 131 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA 210 (426)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE
T ss_pred CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE
Confidence 99999999987643211 110 0011122222223222 2233345555554443321 12234556677
Q ss_pred EEEecCC-CEEEEE-eCCCeEEEEeCCCCc--------------------------------------------------
Q 014104 238 SLSLSED-QLIISG-SSLGSIAISGLSSDQ-------------------------------------------------- 265 (430)
Q Consensus 238 ~~~~~~~-~~l~~~-~~dg~i~vwd~~~~~-------------------------------------------------- 265 (430)
.+.++|+ ++++++ ..+..+.++|..+++
T Consensus 211 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~ 290 (426)
T d1hzua2 211 DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ 290 (426)
T ss_dssp EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT
T ss_pred eeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccccc
Confidence 7777754 444333 344445555544433
Q ss_pred ----eeEEEecCCCCCeEEEEEecCCCEEEE-------EeCCCeEEEEeCCCCceeeee---------ecCCCceEEEEE
Q 014104 266 ----RVATLRSTDCTGIKTLCYNPCSRLVFA-------GTTAGYASCWDLRTMKSLWET---------RISPNVVYSLQH 325 (430)
Q Consensus 266 ----~~~~~~~~~~~~v~~~~~~~~~~~l~~-------~~~dg~i~i~d~~~~~~~~~~---------~~~~~~v~~l~~ 325 (430)
....+.+ |...+..++|+|++++|++ +..+++|++||+++++...++ ..|...|..++
T Consensus 291 ~~~~~~~~l~g-~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~- 368 (426)
T d1hzua2 291 YAWKKVAELQG-QGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE- 368 (426)
T ss_dssp TBTSEEEEEEC-SSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE-
T ss_pred ccceEeEEEec-CCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEE-
Confidence 3344444 5667899999999999995 455789999999998776554 23456688998
Q ss_pred eeCCCCeEEEE-----cCCCeEEEEEcCCCceEEEEEecc
Q 014104 326 LQNDTSTLVVG-----GIDGVLRVLDQNTGEVLSRCVMDI 360 (430)
Q Consensus 326 ~s~~~~~l~s~-----~~dg~i~vwd~~~~~~~~~~~~~~ 360 (430)
|||||++++.+ +.+|.|+|||..+++....+..+.
T Consensus 369 fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 369 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp ECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred ECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence 99999977443 368899999999999988887653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.84 E-value=1.7e-18 Score=154.00 Aligned_cols=254 Identities=13% Similarity=0.003 Sum_probs=186.6
Q ss_pred CEeEEEEecc--ccceeEEEe-cCC-eE-EEEeCCCeEEEEecCCCeeEEeeecCCc------eeEEEEecCCCEEE-EE
Q 014104 102 RIDIDQWKAH--SVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPNA------ASLVDFDFDESKIV-GL 169 (430)
Q Consensus 102 ~~~~~~l~~h--~~~v~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~-~~ 169 (430)
...++++..+ ...+.+++| +|| ++ ++++.++.|.+||+.+++.+..+..+.. ...++++|+++.++ +.
T Consensus 21 ~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~ 100 (337)
T d1pbyb_ 21 MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred CeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEee
Confidence 3556667643 456788999 576 55 5677899999999999999988876432 23589999999987 33
Q ss_pred ------------eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe-
Q 014104 170 ------------IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV- 236 (430)
Q Consensus 170 ------------~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i- 236 (430)
.+..+.+||..+++.............+++.+++..+++++. .+.+||..+++....+..+....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~ 178 (337)
T d1pbyb_ 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEAE 178 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTTTT
T ss_pred cCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCcccc
Confidence 356788999998875443333333445677778888888765 47789999998877765332110
Q ss_pred -----EEEEec------------------CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE
Q 014104 237 -----TSLSLS------------------EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG 293 (430)
Q Consensus 237 -----~~~~~~------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 293 (430)
....+. +......++.++.+.+||..++........++...+..+.++|++.+++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (337)
T d1pbyb_ 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA 258 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc
Confidence 000000 111222234456799999999887665444477788999999999988766
Q ss_pred eCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 294 TTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 294 ~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
++.|++||+.+++.+..+. +...+.+++ |+|||++|++++.|+.|++||+.+++.+.++....+
T Consensus 259 --~~~i~v~d~~~~~~~~~~~-~~~~~~~~~-~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~g~ 322 (337)
T d1pbyb_ 259 --YNVLESFDLEKNASIKRVP-LPHSYYSVN-VSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp --ESEEEEEETTTTEEEEEEE-CSSCCCEEE-ECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred --cccEEEEECCCCcEEEEEc-CCCCEEEEE-ECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECCCC
Confidence 4789999999999988875 456788998 999999999999999999999999999999986443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.80 E-value=2e-17 Score=147.57 Aligned_cols=252 Identities=13% Similarity=0.018 Sum_probs=178.0
Q ss_pred EeEEEEe-ccccceeEEEe-cCC-eE-EEEeCCCeEEEEecCCCeeEEeeecCC-------ceeEEEEecCCCEEE-EE-
Q 014104 103 IDIDQWK-AHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLPN-------AASLVDFDFDESKIV-GL- 169 (430)
Q Consensus 103 ~~~~~l~-~h~~~v~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~-~~- 169 (430)
+.++++. .|...+.+++| +|| ++ ++++.++.|.+||+.+++.+..+.... ....+++++||+.++ +.
T Consensus 29 ~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~ 108 (346)
T d1jmxb_ 29 TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN 108 (346)
T ss_dssp EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence 4567776 45667889999 666 54 666789999999999999988877532 234589999999887 32
Q ss_pred -----------eCCeEEEEEcCCCcccccCC---CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCC
Q 014104 170 -----------IGTRICIWRRNGLRSVFPSR---EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAP 235 (430)
Q Consensus 170 -----------~~~~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 235 (430)
.++.+.+|+..+++...... .+....... ...+..+++.+ +.+.+||+.+++.+..+..+..
T Consensus 109 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~- 184 (346)
T d1jmxb_ 109 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR-AADDGSLYVAG--PDIYKMDVKTGKYTVALPLRNW- 184 (346)
T ss_dssp EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE-ECTTSCEEEES--SSEEEECTTTCCEEEEECSTTC-
T ss_pred CCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEE-ecCCCEEEEeC--CcceEEEccCCCEEEEEecCCC-
Confidence 36778899988766432111 111111122 22233344443 4588999998888877654321
Q ss_pred eEEEEecC--------------------------C-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCC
Q 014104 236 VTSLSLSE--------------------------D-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSR 288 (430)
Q Consensus 236 i~~~~~~~--------------------------~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 288 (430)
...+.++| . ..++++..+..+.+||+.++.........+...+..+.+++++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (346)
T d1jmxb_ 185 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264 (346)
T ss_dssp CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT
T ss_pred ccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCC
Confidence 11111111 1 23444556678999999988877665554777899999999988
Q ss_pred EEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 289 LVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 289 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
+++.+.. +.|.+||..+++.+..+. +...+.+++ |+|||++|++++.|+.|++||+++++.+.++..+.+
T Consensus 265 ~~~~~~~-~~v~v~d~~~~~~~~~~~-~~~~~~~va-~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 265 NQIYGVL-NRLAKYDLKQRKLIKAAN-LDHTYYCVA-FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp TEEEEEE-SEEEEEETTTTEEEEEEE-CSSCCCEEE-ECSSSSCEEEESBSSEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEecC-CeEEEEECCCCcEEEEEc-CCCCEEEEE-EcCCCCEEEEEeCCCcEEEEECccCCEEEEEECCCC
Confidence 8877654 579999999999888776 345788998 999999999999999999999999999999987554
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=3.8e-17 Score=150.63 Aligned_cols=190 Identities=11% Similarity=-0.008 Sum_probs=145.8
Q ss_pred EEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCee--eEEe---ecCCCCeEEEEec
Q 014104 168 GLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKC--SQII---RMHCAPVTSLSLS 242 (430)
Q Consensus 168 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~---~~~~~~i~~~~~~ 242 (430)
.+.+|+|.+||.++++.+.....+.....+.+++++..+++++.||.|++||+.+++. +..+ ..|.+.+.+..|+
T Consensus 38 ~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~S 117 (432)
T d1qksa2 38 LRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEG 117 (432)
T ss_dssp ETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTT
T ss_pred EcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccC
Confidence 6778999999999998765554555567788899999999999999999999988763 2333 2455556666777
Q ss_pred CC-CE-EEEEeCCCeEEEEeCCCCceeEEEecC----------CCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCCCce
Q 014104 243 ED-QL-IISGSSLGSIAISGLSSDQRVATLRST----------DCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRTMKS 309 (430)
Q Consensus 243 ~~-~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~ 309 (430)
|+ ++ +++++.+++|++||..+++.+..+..+ +......+.++|+|..++ +...++.|.+||..+.+.
T Consensus 118 pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~ 197 (432)
T d1qksa2 118 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN 197 (432)
T ss_dssp CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE
T ss_pred CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc
Confidence 66 55 577888999999999999998877541 234567889999998765 566789999999988775
Q ss_pred eeeee-cCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcCCCceEEEEEe
Q 014104 310 LWETR-ISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 310 ~~~~~-~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 358 (430)
..... .+...+..++ ++|+|+++++++ .++.+.++|..+++.+..+..
T Consensus 198 ~~~~~i~~g~~~~~~~-~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~ 247 (432)
T d1qksa2 198 LKTTEISAERFLHDGG-LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 247 (432)
T ss_dssp EEEEEEECCSSEEEEE-ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEcccCccccce-ECCCCCEEEEeccccceEEEeecccceEEEEecc
Confidence 54333 2345677887 999999877666 556899999998888877764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.78 E-value=1.6e-15 Score=137.00 Aligned_cols=276 Identities=6% Similarity=-0.057 Sum_probs=183.2
Q ss_pred eccccceeEEEe-cCC-eEEEE-----eCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------e
Q 014104 109 KAHSVGVDQCRM-KRG-LILTG-----VGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------I 170 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~ 170 (430)
.+|.+++..+++ +++ .++.. +.++.|.+||..+++.+.++..+. ...++|+|||++++ +. .
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~-~~~~a~SpDG~~l~va~~~~~~~~~~~~ 95 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF-LPNPVAAHSGSEFALASTSFSRIAKGKR 95 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC-CccEEEcCCCCEEEEEeecCCccccccc
Confidence 468888999998 666 55443 234679999999999999887654 33689999999988 32 3
Q ss_pred CCeEEEEEcCCCcccccCC--CCce------eeeeEEEEcCCceEEE--ecCCeEEEEECCCCeeeEEeecCCCCeEEEE
Q 014104 171 GTRICIWRRNGLRSVFPSR--EGTF------MKGLCMRYFDPEAVVG--CEDGTARVFDMYSRKCSQIIRMHCAPVTSLS 240 (430)
Q Consensus 171 ~~~i~vwd~~~~~~~~~~~--~~~~------~~~~~~~~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~ 240 (430)
++.|.+||..+++.+.... .... ...+.+.+++..++.. ..++.+.+|+..+.+..... ....++.
T Consensus 96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 171 (373)
T d2madh_ 96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYH 171 (373)
T ss_pred ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEe----ccceeEE
Confidence 5779999999987543221 1111 1235566676664443 34567888888776654433 3456778
Q ss_pred ecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecC-----CCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceee--
Q 014104 241 LSED--QLIISGSSLGSIAISGLSSDQRVATLRST-----DCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLW-- 311 (430)
Q Consensus 241 ~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-- 311 (430)
++|+ ..+++.+.|+.+.+||..++......... .......+.+++++.+ +..+.++.+.+|+...+....
T Consensus 172 ~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~ 250 (373)
T d2madh_ 172 IHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKA 250 (373)
T ss_pred EecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEE
Confidence 8864 56788899999999999988776655431 1112344556665544 455678889999988764322
Q ss_pred eeecCC----------CceEEEEEeeCCCC----------eEEEEcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCC
Q 014104 312 ETRISP----------NVVYSLQHLQNDTS----------TLVVGGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVS 371 (430)
Q Consensus 312 ~~~~~~----------~~v~~l~~~s~~~~----------~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d 371 (430)
....+. .....++ +++++. .+++...++.+.+||+.+++.+..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~------------- 316 (373)
T d2madh_ 251 PIDALSGGRKADTWRPGGWQQVA-YLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------------- 316 (373)
T ss_pred eeccccCcEEeeeeccCcceeeE-EecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC-------------
Confidence 111111 1122233 444444 344556677889999998888877642
Q ss_pred ceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe--EEEEeeCCCeEEEEEecCCCc
Q 014104 372 GVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK--KVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 372 ~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~--~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
...+.+++| ||+ ++++++.|++|+|||+.+++.
T Consensus 317 ------------------------~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 317 ------------------------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred ------------------------CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 234566777 565 357899999999999999875
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.76 E-value=2.7e-15 Score=135.40 Aligned_cols=252 Identities=10% Similarity=0.028 Sum_probs=174.5
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecCCce--------eEEEEecC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLPNAA--------SLVDFDFD 162 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~ 162 (430)
..+.++.++..+ .++| +|| ++++++ .++.|.+||..+++.+..+..+... ..+.|+++
T Consensus 58 ~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~d 135 (373)
T d2madh_ 58 SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPN 135 (373)
T ss_pred CEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeC
Confidence 455566666554 5777 677 777664 4678999999999998887765332 34778888
Q ss_pred CCEEE-E--EeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeEEeecCC-----
Q 014104 163 ESKIV-G--LIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRMHC----- 233 (430)
Q Consensus 163 ~~~l~-~--~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~----- 233 (430)
++.++ . ..++.+.+|+....+....... .....+.+.+.. +++.+.|+.+.+||..+++.......+.
T Consensus 136 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (373)
T d2madh_ 136 NADLLFFQFAAGPAVGLVVQGGSSDDQLLSS---PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQ 212 (373)
T ss_pred CCcEEEEEEcCCCceEEeeccCCeEEEEecc---ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCc
Confidence 88765 3 3356788888877654322221 123456666665 6788999999999998887766554322
Q ss_pred -CCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEe--cC---------CCCCeEEEEEecCCCEEE----------
Q 014104 234 -APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLR--ST---------DCTGIKTLCYNPCSRLVF---------- 291 (430)
Q Consensus 234 -~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~---------~~~~v~~~~~~~~~~~l~---------- 291 (430)
.....+.+.++..++..+.++.+.+|+..++....... .. .......++++|++..++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 292 (373)
T d2madh_ 213 NLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred cceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEE
Confidence 12334455556667777889999999988765432211 10 112334456666665444
Q ss_pred EEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe--EEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 292 AGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST--LVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~--l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
....++.+.+||..+++.+..+. +...+..++ |+|||+. +++++.|+.|++||+.+++.++++..+..
T Consensus 293 ~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a-~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~ 362 (373)
T d2madh_ 293 LHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS-VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGS 362 (373)
T ss_pred eecCCCeEEEEECCCCcEEEEec-CCCCeeEEE-ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCC
Confidence 44566789999999999888776 446788998 9999984 46888999999999999999999976544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.2e-15 Score=135.15 Aligned_cols=268 Identities=11% Similarity=0.135 Sum_probs=175.8
Q ss_pred eEEEEeCCCeEEEEecCCC---eeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCccc--c--cCCCCcee
Q 014104 124 LILTGVGDKVMRLWSLEGY---KCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRSV--F--PSREGTFM 194 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~--~--~~~~~~~~ 194 (430)
.+++++.|++|++|++++. +.++.+..++.+..++|+|||++|+ ++ .++.|.+|++...... . ........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 4577789999999998754 4456667777888899999999996 44 4799999999865422 1 11122222
Q ss_pred eeeEEEEcCCceEEEec-CCeEEEEECCCCeeeE--EeecCCCCeEEEEecCC-CEEEEEe-CCCeEEEEeCCCCceeEE
Q 014104 195 KGLCMRYFDPEAVVGCE-DGTARVFDMYSRKCSQ--IIRMHCAPVTSLSLSED-QLIISGS-SLGSIAISGLSSDQRVAT 269 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~--~~~~~~~~i~~~~~~~~-~~l~~~~-~dg~i~vwd~~~~~~~~~ 269 (430)
..+++.+++..+++++. ++.|.+|+........ ....+...+.++.++|+ +.++.++ .+..+.+|+..+......
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence 34667777888777774 6789999877665433 33456667888999976 5555554 556799999876543221
Q ss_pred -----EecCCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCcee----eeee------cCCCceEEEEEeeCCCCeE
Q 014104 270 -----LRSTDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKSL----WETR------ISPNVVYSLQHLQNDTSTL 333 (430)
Q Consensus 270 -----~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~----~~~~------~~~~~v~~l~~~s~~~~~l 333 (430)
...........++|++++..++... ..+...+++....... .... ........++ ++++++++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~d~~~~ 244 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH-ITPDGRHL 244 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE-ECTTSSEE
T ss_pred eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEE-EecccCce
Confidence 2222445678999999999877554 5567888876543211 1111 1224456676 89999866
Q ss_pred EE-EcCCCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCeEEE
Q 014104 334 VV-GGIDGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMKKVV 410 (430)
Q Consensus 334 ~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~ 410 (430)
+. +..++.+.+|++...........+.. +...+.+++| ||++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~p~~~a~spDGk~l~ 291 (333)
T d1ri6a_ 245 YACDRTASLITVFSVSEDGSVLSKEGFQP---------------------------------TETQPRGFNVDHSGKYLI 291 (333)
T ss_dssp EEEETTTTEEEEEEECTTSCCEEEEEEEE---------------------------------CSSSCCCEEECTTSSEEE
T ss_pred eeecccCCeEEEEEEcCCCCEEEEEEEeC---------------------------------CCCCeeEEEEeCCCCEEE
Confidence 55 45678999999876544443332211 1123455666 677765
Q ss_pred Ee-eCCCeEEEEEecC
Q 014104 411 TT-HNSKYIRLWKFNY 425 (430)
Q Consensus 411 t~-~~Dg~v~vw~~~~ 425 (430)
++ +.++.|++|+++.
T Consensus 292 va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 292 AAGQKSHHISVYEIVG 307 (333)
T ss_dssp EECTTTCEEEEEEEET
T ss_pred EEECCCCeEEEEEEEC
Confidence 54 5678999997754
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=9.5e-16 Score=137.33 Aligned_cols=267 Identities=11% Similarity=-0.002 Sum_probs=174.8
Q ss_pred cCC-eEEEE-----eCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE----------eCCeEEEEEcCCCc
Q 014104 121 KRG-LILTG-----VGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL----------IGTRICIWRRNGLR 183 (430)
Q Consensus 121 ~~~-~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~----------~~~~i~vwd~~~~~ 183 (430)
+++ .++.. ..+.+|.+||..+++.+.++..+. ...++|+|||+.|+ ++ .++.|.+||..+++
T Consensus 11 pdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~ 89 (355)
T d2bbkh_ 11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 89 (355)
T ss_dssp CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC-CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence 566 55543 345689999999999999887653 33689999999887 32 36889999999887
Q ss_pred cccc--CCCC------ceeeeeEEEEcCCceEEEe--cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCC
Q 014104 184 SVFP--SREG------TFMKGLCMRYFDPEAVVGC--EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSL 253 (430)
Q Consensus 184 ~~~~--~~~~------~~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d 253 (430)
.+.. .... .....+.+.+++..+++++ .+..+.+||..+++.+..+..+.... . ........++.+.|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~d 167 (355)
T d2bbkh_ 90 PTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-I-FPTAPDTFFMHCRD 167 (355)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-E-EEEETTEEEEEETT
T ss_pred EEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcce-E-eecCCcceEEEcCC
Confidence 4321 1111 1123456777777766554 56789999999999888876543221 1 11122334444556
Q ss_pred CeEEEEeCCCCceeEEEec-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCcee--eeeecCC---------
Q 014104 254 GSIAISGLSSDQRVATLRS-----TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSL--WETRISP--------- 317 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~--------- 317 (430)
+....+..........+.. .+...+....+.+++..++.++.++.+++|++..++.. .....+.
T Consensus 168 g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (355)
T d2bbkh_ 168 GSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 247 (355)
T ss_dssp SCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeee
Confidence 6555555443333222211 12234556678888889999999999999999876532 1222111
Q ss_pred -CceEEEEEeeCCCCeEEEEcCC----------CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCc
Q 014104 318 -NVVYSLQHLQNDTSTLVVGGID----------GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGC 386 (430)
Q Consensus 318 -~~v~~l~~~s~~~~~l~s~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~ 386 (430)
.....++ +++++..++....+ +.|.+||..+++.+.++..+.
T Consensus 248 p~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~-------------------------- 300 (355)
T d2bbkh_ 248 PGGWQQVA-YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-------------------------- 300 (355)
T ss_dssp ECSSSCEE-EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--------------------------
T ss_pred ccceEEEE-EeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC--------------------------
Confidence 2223455 88999887766533 479999999999988876422
Q ss_pred ccccCCCCCCCCeeEEEE--cCe--EEEEeeCCCeEEEEEecCCCc
Q 014104 387 CIDRIPKTIRPPITCLAV--GMK--KVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 387 ~~~~~~~~h~~~v~~v~~--~~~--~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+.+++| ||+ ++++++.|+.|+|||+++++.
T Consensus 301 -----------~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~ 335 (355)
T d2bbkh_ 301 -----------EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335 (355)
T ss_dssp -----------EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred -----------CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCE
Confidence 3455666 454 467888899999999999874
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=3.2e-15 Score=133.82 Aligned_cols=254 Identities=12% Similarity=0.074 Sum_probs=170.1
Q ss_pred CEeEEEEeccccceeEEEe-cCC-eEEEE----------eCCCeEEEEecCCCeeEEeeecCC--------ceeEEEEec
Q 014104 102 RIDIDQWKAHSVGVDQCRM-KRG-LILTG----------VGDKVMRLWSLEGYKCVEEYSLPN--------AASLVDFDF 161 (430)
Q Consensus 102 ~~~~~~l~~h~~~v~~~~~-~~~-~l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~ 161 (430)
...+.++..+..+ .++| +|| +|+++ +.|+.|++||+.+++.+..+..+. ....++|++
T Consensus 38 g~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 115 (355)
T d2bbkh_ 38 GRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP 115 (355)
T ss_dssp TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred CcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEec
Confidence 3456666665544 5778 566 55543 457899999999999888776432 234589999
Q ss_pred CCCEEE-EE--eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee------cC
Q 014104 162 DESKIV-GL--IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR------MH 232 (430)
Q Consensus 162 ~~~~l~-~~--~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~------~~ 232 (430)
+++.++ +. .+..+.+|+..+++.+........ ...........++.+.||...++..........+. .+
T Consensus 116 dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~ 193 (355)
T d2bbkh_ 116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED 193 (355)
T ss_dssp TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred CCCeeEEecCCCCceeeeeecCCCcEeeEEecCCc--ceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccccee
Confidence 999887 33 457899999998875432222111 11222233345666777777666654443322221 12
Q ss_pred CCCeEEEEec-CCCEEEEEeCCCeEEEEeCCCCceeE--EEecC---------CCCCeEEEEEecCCCEEEEEeCC----
Q 014104 233 CAPVTSLSLS-EDQLIISGSSLGSIAISGLSSDQRVA--TLRST---------DCTGIKTLCYNPCSRLVFAGTTA---- 296 (430)
Q Consensus 233 ~~~i~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~---------~~~~v~~~~~~~~~~~l~~~~~d---- 296 (430)
...+....+. ++..++.++.++.+++|++..++... ..... .......++++|++..++....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~ 273 (355)
T d2bbkh_ 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 273 (355)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCce
Confidence 2334445555 45788888999999999998765421 11110 01234558899999988766543
Q ss_pred ------CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCC--eEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 297 ------GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTS--TLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 297 ------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
..|.+||..+++.+..+..+ ..+.+++ |+|||+ ++++++.|+.|++||+++++.++++..+..
T Consensus 274 ~~~~~~~~v~v~d~~t~~~~~~~~~~-~~~~~~a-~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~ 344 (355)
T d2bbkh_ 274 RHKTASRFVVVLDAKTGERLAKFEMG-HEIDSIN-VSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH 344 (355)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEE-ECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred eecCCCCeEEEEeCCCCcEEEEecCC-CCEEEEE-EcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC
Confidence 36999999999988887644 5678998 999998 456778899999999999999999875443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.3e-13 Score=121.79 Aligned_cols=254 Identities=12% Similarity=0.068 Sum_probs=162.0
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEE-EeCCCeEEEEecCCCee----EEeeecCCceeEEEEecCCCEEE-EE-eCCeE
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILT-GVGDKVMRLWSLEGYKC----VEEYSLPNAASLVDFDFDESKIV-GL-IGTRI 174 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s-~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i 174 (430)
.+.....|.+.+..++| ||| +|++ +..|+.|++|++..... .........+..++|+|||++|+ +. .++.+
T Consensus 28 ~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v 107 (333)
T d1ri6a_ 28 TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNV 107 (333)
T ss_dssp EEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEE
T ss_pred EEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCce
Confidence 44444568899999999 676 6644 45589999999876532 22333445567799999999988 44 46789
Q ss_pred EEEEcCCCcccc---cCCCCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCeeeEEe------ecCCCCeEEEEecCC
Q 014104 175 CIWRRNGLRSVF---PSREGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQII------RMHCAPVTSLSLSED 244 (430)
Q Consensus 175 ~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~------~~~~~~i~~~~~~~~ 244 (430)
.+|+........ ..........+.+.+++..+++++ .+..|.+|+..+....... .........++|+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~ 187 (333)
T d1ri6a_ 108 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN 187 (333)
T ss_dssp EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred eeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence 999987655221 111222233456666777655555 5567999998765332211 123445678999865
Q ss_pred -CEEE-EEeCCCeEEEEeCCCCce----eEEEec-----CCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeCCCCceeee
Q 014104 245 -QLII-SGSSLGSIAISGLSSDQR----VATLRS-----TDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 245 -~~l~-~~~~dg~i~vwd~~~~~~----~~~~~~-----~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~ 312 (430)
..++ +....+...+|+...... ...... ........+++++++++++.. ..++.+.+|++........
T Consensus 188 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (333)
T d1ri6a_ 188 EQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 267 (333)
T ss_dssp SSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred ceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEE
Confidence 4444 445667788887654321 122211 122356788999999977654 5577899999876544333
Q ss_pred ee---cCCCceEEEEEeeCCCCeEEEEc-CCCeEEEE--EcCCCce--EEEEEe
Q 014104 313 TR---ISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVL--DQNTGEV--LSRCVM 358 (430)
Q Consensus 313 ~~---~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vw--d~~~~~~--~~~~~~ 358 (430)
.. .+...+.+++ |+|||++|++++ .++.|.+| |.++|++ +..+..
T Consensus 268 ~~~~~~~~~~p~~~a-~spDGk~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~ 320 (333)
T d1ri6a_ 268 KEGFQPTETQPRGFN-VDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV 320 (333)
T ss_dssp EEEEEECSSSCCCEE-ECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEEEeCCCCCeeEEE-EeCCCCEEEEEECCCCeEEEEEEECCCCcEEEEEeccC
Confidence 22 2335677888 999999887765 56899999 4566754 344443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.55 E-value=5.1e-13 Score=120.12 Aligned_cols=251 Identities=8% Similarity=0.033 Sum_probs=163.0
Q ss_pred EeEEEEeccccceeEEEe-cCC-eEEEEe----------CCCeEEEEecCCCeeEEeeecCC--------ceeEEEEecC
Q 014104 103 IDIDQWKAHSVGVDQCRM-KRG-LILTGV----------GDKVMRLWSLEGYKCVEEYSLPN--------AASLVDFDFD 162 (430)
Q Consensus 103 ~~~~~l~~h~~~v~~~~~-~~~-~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~ 162 (430)
..+.++.++..+ .+++ ++| .|++++ .|+.|.+||..+++.+..+..+. ....++|+||
T Consensus 57 ~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpD 134 (368)
T d1mdah_ 57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134 (368)
T ss_dssp EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred cEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCC
Confidence 344555555544 3556 566 666543 47789999999999998886432 1235899999
Q ss_pred CCEEE-EE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEE-cCCceEEEecCCeEEEEECCCCeeeEEe------ecCC
Q 014104 163 ESKIV-GL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRY-FDPEAVVGCEDGTARVFDMYSRKCSQII------RMHC 233 (430)
Q Consensus 163 ~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~~~ 233 (430)
|++++ +. .++.+.+||+.+++.+........ ..+.+ ....++..+.||.+.++++......... ..+.
T Consensus 135 Gk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (368)
T d1mdah_ 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN 211 (368)
T ss_dssp SSCEEEEECSSSCEEEEEETTTEEEEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEeEEeeccCc---ceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc
Confidence 99988 43 479999999999875432221111 11122 2334777788999999988765433222 2233
Q ss_pred CCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecC-----------CCCCeEEEEEecCCCEEEEEeCC------
Q 014104 234 APVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRST-----------DCTGIKTLCYNPCSRLVFAGTTA------ 296 (430)
Q Consensus 234 ~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d------ 296 (430)
..+..+.+.++...+. ...+.+.+++...+......... .......++++|++..++....+
T Consensus 212 ~~~~~~~~~~~g~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~ 290 (368)
T d1mdah_ 212 CSSQAAQANYPGMLVW-AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL 290 (368)
T ss_dssp BCSCCEEETTTTEEEE-CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred cceeecccccCcEEEE-ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceee
Confidence 3445566665543332 33566677776654443221110 00123457889998877765332
Q ss_pred ---CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCe--EEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 297 ---GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTST--LVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 297 ---g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~--l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
..|.+||..+++.+..+... ..+.+++ ++|||+. ++++..++.|++||..+++.++++.....
T Consensus 291 ~~~~~v~v~D~~t~~~~~~~~~~-~~~~~~a-~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~ 358 (368)
T d1mdah_ 291 AAAENTSSVTASVGQTSGPISNG-HDSDAII-AAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG 358 (368)
T ss_dssp SCEEEEEEEESSSCCEEECCEEE-EEECEEE-ECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC
T ss_pred cCCceEEEEECCCCcEeEEecCC-CceeEEE-ECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCC
Confidence 35999999999988877644 5788898 9999973 46777899999999999999998875433
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.53 E-value=2e-13 Score=122.79 Aligned_cols=258 Identities=8% Similarity=-0.057 Sum_probs=168.3
Q ss_pred EeCCCe--EEEEecCCCeeEEeeecCCceeEEEEecCCCEEEE-E----------eCCeEEEEEcCCCcccccC--C---
Q 014104 128 GVGDKV--MRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVG-L----------IGTRICIWRRNGLRSVFPS--R--- 189 (430)
Q Consensus 128 ~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----------~~~~i~vwd~~~~~~~~~~--~--- 189 (430)
+..+++ +.+||..+++.+..+..+... .++++|||+.++. + .++.|.+||..+++.+... +
T Consensus 40 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~ 118 (368)
T d1mdah_ 40 AYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAP 118 (368)
T ss_dssp TTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSC
T ss_pred ccCCCcceEEEEeCCCCcEEEEEeCCCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccc
Confidence 344444 667799999999988876443 6899999998883 2 2567999999988753221 1
Q ss_pred ---CCceeeeeEEEEcCCceEEEe-cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 190 ---EGTFMKGLCMRYFDPEAVVGC-EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQ 265 (430)
Q Consensus 190 ---~~~~~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 265 (430)
.+.....+.+++++..++++. .++.+.+||+.+++.+..+..+..... ...+...++..+.||.+.++++....
T Consensus 119 ~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 119 RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--HPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--EEEETTEEECCCCTTSCEEEECCSSC
T ss_pred eecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--ccCCCceEEEEcCCCCEEEEEecCCc
Confidence 111223477888888877765 579999999999999888876554321 11233577778889999999887554
Q ss_pred eeEEEec-----CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeee--eecC----------CCceEEEEEeeC
Q 014104 266 RVATLRS-----TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWE--TRIS----------PNVVYSLQHLQN 328 (430)
Q Consensus 266 ~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~--~~~~----------~~~v~~l~~~s~ 328 (430)
....... .+...+..+.+.+++..+.+. .+.+++++...+..... ...+ .+....++ +++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a-~~~ 273 (368)
T d1mdah_ 197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA-KLK 273 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE-EET
T ss_pred eeeeeeecccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEE-EcC
Confidence 4322211 122345567777777665543 45566666655433221 1111 11223455 788
Q ss_pred CCCeEEEEcCC---------CeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCe
Q 014104 329 DTSTLVVGGID---------GVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPI 399 (430)
Q Consensus 329 ~~~~l~s~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v 399 (430)
++..++....+ ..|.+||..+++.+.++... ..+
T Consensus 274 ~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-------------------------------------~~~ 316 (368)
T d1mdah_ 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-------------------------------------HDS 316 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-------------------------------------EEE
T ss_pred CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCC-------------------------------------Cce
Confidence 88877654322 36899999999988776542 134
Q ss_pred eEEEE--cCe--EEEEeeCCCeEEEEEecCCCc
Q 014104 400 TCLAV--GMK--KVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 400 ~~v~~--~~~--~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
.+++| ||+ .++++..|+.|+|||..+++.
T Consensus 317 ~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~ 349 (368)
T d1mdah_ 317 DAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349 (368)
T ss_dssp CEEEECCSSSCEEEEEETTTTEEEEEESSSCEE
T ss_pred eEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 55555 454 357888899999999998874
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.47 E-value=6.2e-13 Score=119.39 Aligned_cols=247 Identities=10% Similarity=0.040 Sum_probs=159.8
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecC-------------------------------CceeEEEEecCCCEEE--EEe
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLP-------------------------------NAASLVDFDFDESKIV--GLI 170 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~l~--~~~ 170 (430)
.++||+.+|+|++|++.+++.++++..- ........+|||++|+ ...
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 4778889999999999999988886421 1112233468999987 345
Q ss_pred CCeEEEEEcCCCcc--cccCCCCceeeeeEEEEcCCc--eEEEecCC-----------------eEEEEECCCCeeeEEe
Q 014104 171 GTRICIWRRNGLRS--VFPSREGTFMKGLCMRYFDPE--AVVGCEDG-----------------TARVFDMYSRKCSQII 229 (430)
Q Consensus 171 ~~~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~--l~~~~~dg-----------------~i~vwd~~~~~~~~~~ 229 (430)
++.|.++|+++.+. +.....+.....+++.+++.. ++..+.+. .+..+|..+.+....+
T Consensus 93 ~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 93 NTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 78999999999874 334444555555677766665 33333221 2355888888777666
Q ss_pred ecCCCCeEEEEecCC-CEEEEEeC-----------------------------------------CCeEEEEeCCCCcee
Q 014104 230 RMHCAPVTSLSLSED-QLIISGSS-----------------------------------------LGSIAISGLSSDQRV 267 (430)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~~~~~-----------------------------------------dg~i~vwd~~~~~~~ 267 (430)
... +....+.++|+ +++++++. ++.+.+++......+
T Consensus 173 ~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 173 IVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT 251 (441)
T ss_dssp EES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred ecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence 543 34667788865 55555543 345566665656666
Q ss_pred EEEecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCCCCcee--------eeeecCC---CceEEEEEeeCCCCeEEE
Q 014104 268 ATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLRTMKSL--------WETRISP---NVVYSLQHLQNDTSTLVV 335 (430)
Q Consensus 268 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~--------~~~~~~~---~~v~~l~~~s~~~~~l~s 335 (430)
..+.. ......+.++|||++++ ++..+++|.+||+.+.+.. ..+.++. -...... |+++|....+
T Consensus 252 ~~IPv--gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~-fd~~g~~yts 328 (441)
T d1qnia2 252 RYIPV--PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTT-FDGRGNAYTT 328 (441)
T ss_dssp EEECC--BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEE-ECSSSEEEEE
T ss_pred EEEeC--CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccce-ecCCceEEEc
Confidence 77764 33568899999999876 5667899999998763321 1111111 1122334 8899988889
Q ss_pred EcCCCeEEEEEcCC----------CceEEEEE-----eccCcceeeeccCCceE
Q 014104 336 GGIDGVLRVLDQNT----------GEVLSRCV-----MDIGSASSSSNKVSGVI 374 (430)
Q Consensus 336 ~~~dg~i~vwd~~~----------~~~~~~~~-----~~~~~~~~~~~s~d~~v 374 (430)
...|..|..|++.. ...+..+. +|.......+.++||..
T Consensus 329 ~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~ 382 (441)
T d1qnia2 329 LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKW 382 (441)
T ss_dssp ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCE
T ss_pred ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcE
Confidence 99999999999751 22445553 44444455566666654
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=5.7e-14 Score=80.51 Aligned_cols=40 Identities=33% Similarity=0.600 Sum_probs=38.8
Q ss_pred cCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhH
Q 014104 25 ESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLL 64 (430)
Q Consensus 25 ~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw 64 (430)
..||+|++.+||+||+++||.++++|||+|+.++.++.+|
T Consensus 2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW 41 (41)
T d1fs1a1 2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41 (41)
T ss_dssp CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence 5799999999999999999999999999999999999998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.39 E-value=1.3e-10 Score=107.74 Aligned_cols=134 Identities=8% Similarity=-0.076 Sum_probs=93.2
Q ss_pred EEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC------CceeEEEEecCCCEEE-EEe---------CCeEEEEE
Q 014104 117 QCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP------NAASLVDFDFDESKIV-GLI---------GTRICIWR 178 (430)
Q Consensus 117 ~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~-~~~---------~~~i~vwd 178 (430)
.+.| +++ +++ ..|+.+.+||+.+++....+..+ ..+..+.|+||+++|+ ++. ++.+.+||
T Consensus 21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 3455 555 544 35788999999999877655543 3467799999999998 432 46789999
Q ss_pred cCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeec------------------CCCCeEEEE
Q 014104 179 RNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRM------------------HCAPVTSLS 240 (430)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------------------~~~~i~~~~ 240 (430)
+++++...............+++++..++.. .++.+.+|+..+++..+.... ..+....+.
T Consensus 99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp TTTTEECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred CCCCcccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 9998754333333445567788888888875 567899999988876554321 123345678
Q ss_pred ecCC-CEEEEEeCC
Q 014104 241 LSED-QLIISGSSL 253 (430)
Q Consensus 241 ~~~~-~~l~~~~~d 253 (430)
|+|+ +.++....|
T Consensus 178 wSPDGk~ia~~~~d 191 (470)
T d2bgra1 178 WSPNGTFLAYAQFN 191 (470)
T ss_dssp ECTTSSEEEEEEEE
T ss_pred ECCCCCccceeEec
Confidence 9987 777776544
|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=3.7e-13 Score=96.26 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=50.7
Q ss_pred CCCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 20 PRATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 20 ~~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
-.|+|..||.||+.+||+||++.||+++++|||+|+.++.++.+|+.+|.+.+
T Consensus 15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~ 67 (102)
T d2ovrb1 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 67 (102)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTT
T ss_pred ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence 46999999999999999999999999999999999999999999999998775
|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Cdc4 F-box and linker domains species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.30 E-value=5.6e-13 Score=94.49 Aligned_cols=52 Identities=33% Similarity=0.452 Sum_probs=48.1
Q ss_pred CCCccCCcHHHHHHHhcCCChhhhHHHHhhhHHHHHhc-CCchhHHHHHHHhc
Q 014104 21 RATIESLNGDIICMIFSSLGFFDLVRCSAVCKSWNAII-NRCKLLQLLYCKLH 72 (430)
Q Consensus 21 ~~~~~~Lp~e~~~~i~~~l~~~~l~~~~~v~~~w~~~~-~~~~lw~~~~~~~~ 72 (430)
+|++..||.||+++||+||++.||.++++|||.|+.++ .++.+|+.++.+.+
T Consensus 3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~~ 55 (100)
T d1nexb1 3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN 55 (100)
T ss_dssp CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHTT
T ss_pred CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999887 57889999998764
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.22 E-value=4.1e-10 Score=104.24 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=60.9
Q ss_pred eccccceeEEEe-cCC-eEEEEeC---------CCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEE
Q 014104 109 KAHSVGVDQCRM-KRG-LILTGVG---------DKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIW 177 (430)
Q Consensus 109 ~~h~~~v~~~~~-~~~-~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vw 177 (430)
.+|...|.++.| ||+ +|+.++. ++.+.+||+.+++.......+..+....|+|||+.++-..++.+.+|
T Consensus 58 ~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~ 137 (470)
T d2bgra1 58 DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVK 137 (470)
T ss_dssp TTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEE
T ss_pred hhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccccccccccCcceeeEeecccceEE
Confidence 445678999999 667 7777643 56889999999886554445567788999999999998889999999
Q ss_pred EcCCCcc
Q 014104 178 RRNGLRS 184 (430)
Q Consensus 178 d~~~~~~ 184 (430)
+..+++.
T Consensus 138 ~~~~g~~ 144 (470)
T d2bgra1 138 IEPNLPS 144 (470)
T ss_dssp SSTTSCC
T ss_pred ECCCCce
Confidence 9987764
|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.7e-12 Score=94.08 Aligned_cols=53 Identities=26% Similarity=0.340 Sum_probs=49.3
Q ss_pred CCCCccCCcH----HHHHHHhcCCChhhhHHHHhhhHHHHHhcCCchhHHHHHHHhc
Q 014104 20 PRATIESLNG----DIICMIFSSLGFFDLVRCSAVCKSWNAIINRCKLLQLLYCKLH 72 (430)
Q Consensus 20 ~~~~~~~Lp~----e~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~lw~~~~~~~~ 72 (430)
-+|++..||. ||+++||+|||+.||+++++|||.|+.+++++.+|+.+|.+..
T Consensus 7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~ 63 (118)
T d1p22a1 7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV 63 (118)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhc
Confidence 3578999995 9999999999999999999999999999999999999998764
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.15 E-value=4.5e-10 Score=100.59 Aligned_cols=226 Identities=11% Similarity=0.035 Sum_probs=143.7
Q ss_pred ccccceeEEEe-cCC-eE-EEEeCCCeEEEEecCCCeeEEeeecC--CceeEEEEecCCCE--EEEEeCCeE--------
Q 014104 110 AHSVGVDQCRM-KRG-LI-LTGVGDKVMRLWSLEGYKCVEEYSLP--NAASLVDFDFDESK--IVGLIGTRI-------- 174 (430)
Q Consensus 110 ~h~~~v~~~~~-~~~-~l-~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~--l~~~~~~~i-------- 174 (430)
.|......... +|| +| ++...+..|.++|+.+++..+.+..+ .....++|+++|+. ++...+..+
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~ 148 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTD 148 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccc
Confidence 34444455444 567 55 44557889999999999998877654 45666999999985 444444333
Q ss_pred ----------EEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec---------------------------------
Q 014104 175 ----------CIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE--------------------------------- 211 (430)
Q Consensus 175 ----------~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------------------- 211 (430)
..+|..+.+.......+.....+.+.++++.+++++.
T Consensus 149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d 228 (441)
T d1qnia2 149 FSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA 228 (441)
T ss_dssp CCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred cccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence 4477776654333222222333555555555444432
Q ss_pred --------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CE-EEEEeCCCeEEEEeCCCCcee--------EEE--e
Q 014104 212 --------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL-IISGSSLGSIAISGLSSDQRV--------ATL--R 271 (430)
Q Consensus 212 --------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~-l~~~~~dg~i~vwd~~~~~~~--------~~~--~ 271 (430)
++.+.+++....+.+..+..... ...+.++|+ ++ ++++..+++|.+||+.+.... ..+ +
T Consensus 229 Gk~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~ 307 (441)
T d1qnia2 229 GNFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAE 307 (441)
T ss_dssp TCCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEEC
T ss_pred CCEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEee
Confidence 34555555555556666665444 467899986 54 456778999999998652210 111 1
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC----------ceeeee-----ecCCCceEEEEEeeCCCCeEEEE
Q 014104 272 STDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM----------KSLWET-----RISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 272 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~-----~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
....-.....+|+++|+...+...|..|..|++... ..+..+ .+|...+.+.. ++|||++|+++
T Consensus 308 ~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t-~~pdGk~l~s~ 386 (441)
T d1qnia2 308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTES-RDADGKWLVVL 386 (441)
T ss_dssp CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTS-TTCCCCEEEEE
T ss_pred cccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccc-cCCCCcEEEec
Confidence 112224566789999988888889999999997421 122223 47777777777 99999999999
Q ss_pred c
Q 014104 337 G 337 (430)
Q Consensus 337 ~ 337 (430)
+
T Consensus 387 ~ 387 (441)
T d1qnia2 387 S 387 (441)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.13 E-value=2.9e-07 Score=78.19 Aligned_cols=234 Identities=10% Similarity=0.126 Sum_probs=146.7
Q ss_pred eEEEEecCCCEEEE-EeCCeEEEEEcCCCccc-ccC---CCCceeee--eEEEEcCCc-eE-EEecCCeEEEEECCCCee
Q 014104 155 SLVDFDFDESKIVG-LIGTRICIWRRNGLRSV-FPS---REGTFMKG--LCMRYFDPE-AV-VGCEDGTARVFDMYSRKC 225 (430)
Q Consensus 155 ~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~-~~~---~~~~~~~~--~~~~~~~~~-l~-~~~~dg~i~vwd~~~~~~ 225 (430)
.-++++++++.+++ ...+.|++||.++.... +.. ..+..... ..+...... ++ ..+.++.|..++. .++.
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~~ 104 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQF 104 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSCE
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-cccc
Confidence 44666666665553 33456666765543211 100 11111111 222222222 22 2345567878875 5666
Q ss_pred eEEee-cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEec-CCCCCeEEEEEecCCCEEEEEeCCCeEEEE
Q 014104 226 SQIIR-MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRS-TDCTGIKTLCYNPCSRLVFAGTTAGYASCW 302 (430)
Q Consensus 226 ~~~~~-~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~ 302 (430)
...+. ........+++.++ .++++....+.+.+++. +++.+..+.. .+......+++.++++.+++....+.|++|
T Consensus 105 ~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~ 183 (279)
T d1q7fa_ 105 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVF 183 (279)
T ss_dssp EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEE
T ss_pred eeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeee
Confidence 65553 23456678888865 66666677788999985 4677776632 244578889999999988888889999999
Q ss_pred eCCCCceeeeee--cCCCceEEEEEeeCCCCeEEEEcC-CCeEEEEEcCCCceEEEEEeccCcceeeeccCCceEEEeec
Q 014104 303 DLRTMKSLWETR--ISPNVVYSLQHLQNDTSTLVVGGI-DGVLRVLDQNTGEVLSRCVMDIGSASSSSNKVSGVIERNEG 379 (430)
Q Consensus 303 d~~~~~~~~~~~--~~~~~v~~l~~~s~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~ 379 (430)
|.. ++.+.++. +......+++ +.++|+.+++-.. ++.|.+|+. +|+.+.++.....
T Consensus 184 d~~-G~~~~~~g~~g~~~~P~gia-vD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~------------------ 242 (279)
T d1q7fa_ 184 NYE-GQYLRQIGGEGITNYPIGVG-INSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVK------------------ 242 (279)
T ss_dssp ETT-CCEEEEESCTTTSCSEEEEE-ECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSC------------------
T ss_pred ecC-CceeeeecccccccCCcccc-cccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCC------------------
Confidence 975 66665553 2345577888 9999997777554 457999984 5888887764322
Q ss_pred ccccCCcccccCCCCCCCCeeEEEE--cCeEEEEeeCCCeEEEEEecCCCc
Q 014104 380 RRLSAGCCIDRIPKTIRPPITCLAV--GMKKVVTTHNSKYIRLWKFNYSDK 428 (430)
Q Consensus 380 ~~~~~~~~~~~~~~~h~~~v~~v~~--~~~~l~t~~~Dg~v~vw~~~~~~~ 428 (430)
......|++ ||.+++ ++.+++|++|+....++
T Consensus 243 ----------------~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 243 ----------------HAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLAP 276 (279)
T ss_dssp ----------------CSCEEEEEEETTTEEEE-EETTTEEEEEECSCCCC
T ss_pred ----------------CCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeecC
Confidence 123456666 465444 56789999999886553
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.07 E-value=4.5e-08 Score=82.44 Aligned_cols=232 Identities=9% Similarity=0.011 Sum_probs=135.8
Q ss_pred eeEEEe-cCC--eEEEEeCCCeEEEEecCCCe-eEEeeecCCceeEEEEecCCCEEEEEeCCeEE-EEEcCCCcccccCC
Q 014104 115 VDQCRM-KRG--LILTGVGDKVMRLWSLEGYK-CVEEYSLPNAASLVDFDFDESKIVGLIGTRIC-IWRRNGLRSVFPSR 189 (430)
Q Consensus 115 v~~~~~-~~~--~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~-vwd~~~~~~~~~~~ 189 (430)
-..+++ ++| +++..+..+.+..++..+.. .............+++++++..+++...+.+. +++..+........
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~ 95 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD 95 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee
Confidence 467888 455 44445566777777655432 22223333455668999999877766555544 43333333332222
Q ss_pred CCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeE
Q 014104 190 EGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVA 268 (430)
Q Consensus 190 ~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~ 268 (430)
.......+++...+..+++-..+..+..++............-......++++++ +++++...++.|..+|...... .
T Consensus 96 ~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-~ 174 (260)
T d1rwia_ 96 GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-V 174 (260)
T ss_dssp SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE-E
T ss_pred eeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee-e
Confidence 2222233333333443444445566767765443322111112234568888865 7777778888999999775433 3
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcC
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~ 348 (430)
.+..........++++++|+++++....+.|..++.............-.....|+ ++++|.++++-..++.|+.++..
T Consensus 175 ~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~-~d~~g~l~vad~~~~rI~~i~~~ 253 (260)
T d1rwia_ 175 VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVA-VDSDRTVYVADRGNDRVVKLTSL 253 (260)
T ss_dssp ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEE-ECTTCCEEEEEGGGTEEEEECCC
T ss_pred eeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEE-EeCCCCEEEEECCCCEEEEEeCC
Confidence 33322445788999999999888888888898888764432211122224567888 88999887777777777766543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.01 E-value=2.7e-07 Score=77.75 Aligned_cols=218 Identities=12% Similarity=0.052 Sum_probs=127.3
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC---CeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEE
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG---TRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVV 208 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 208 (430)
.|.|-|.+.........+...+..-+|||||+.|+ .... ..+.+.+..++................+++++..++.
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~ 99 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF 99 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeE
Confidence 57777777666666666677777889999999999 4433 3477777777664433333333445666666766554
Q ss_pred Eec-CCe--EEEEECCCCeeeEEeecCCCCeEEEEecCC--CEEEEEeCCC--eEEEEeCCCCceeEEEecCCCCCeEEE
Q 014104 209 GCE-DGT--ARVFDMYSRKCSQIIRMHCAPVTSLSLSED--QLIISGSSLG--SIAISGLSSDQRVATLRSTDCTGIKTL 281 (430)
Q Consensus 209 ~~~-dg~--i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~ 281 (430)
... ++. +..+........... ..........++++ ..+++...++ .|.+.++..+..... .. ........
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~-~~-~~~~~~~~ 176 (269)
T d2hqsa1 100 ALSKTGSLNLYVMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI-TW-EGSQNQDA 176 (269)
T ss_dssp EECTTSSCEEEEEETTTCCEEECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC-CC-SSSEEEEE
T ss_pred eeecCCccceeecccccccceeee-eccccccccccccccccceecccccCCceEeeeecccccceee-ec-cccccccc
Confidence 433 322 223332222222222 23333444455543 3445555555 466666665543332 22 45567778
Q ss_pred EEecCCCEEEEEeCCC---eEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcC---CCeEEEEEcCCCceEEE
Q 014104 282 CYNPCSRLVFAGTTAG---YASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGI---DGVLRVLDQNTGEVLSR 355 (430)
Q Consensus 282 ~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~---dg~i~vwd~~~~~~~~~ 355 (430)
.|+|+++.++..+.++ .+.+.+...+.. ....+........ |+|||+.|+-.+. ...|+++++..+.. ..
T Consensus 177 ~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~p~-~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~ 252 (269)
T d2hqsa1 177 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTFLDETPS-LAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-AR 252 (269)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSSSCEEEE-ECTTSSEEEEEEEETTEEEEEEEETTSCCE-EE
T ss_pred ccccccceeEEEeecCCceeeeEeecccccc--eEeecCccccceE-ECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EE
Confidence 9999999888665543 355555554433 3333445566777 9999998875543 45788999885543 33
Q ss_pred EE
Q 014104 356 CV 357 (430)
Q Consensus 356 ~~ 357 (430)
+.
T Consensus 253 lt 254 (269)
T d2hqsa1 253 LP 254 (269)
T ss_dssp CC
T ss_pred Ee
Confidence 43
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.00 E-value=1.9e-07 Score=80.49 Aligned_cols=231 Identities=10% Similarity=0.041 Sum_probs=149.1
Q ss_pred eEEEEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeCCeEEEEEcC
Q 014104 104 DIDQWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIGTRICIWRRN 180 (430)
Q Consensus 104 ~~~~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~i~vwd~~ 180 (430)
.+..+.... .+..+++ ++| ++++...+++|..||... +.............++++++|+.++ ...++.+..++..
T Consensus 20 v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 20 IITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp EEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred EEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence 345554322 4778888 677 777777899999998664 4444455566778899999999888 5567788888876
Q ss_pred CCcc----cccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee----------cCCCCeEEEEecCCCE
Q 014104 181 GLRS----VFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR----------MHCAPVTSLSLSEDQL 246 (430)
Q Consensus 181 ~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----------~~~~~i~~~~~~~~~~ 246 (430)
.... +...........+.+...+..+++.+.++.+..+|..++....... ........+.+..+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l 177 (302)
T d2p4oa1 98 KSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL 177 (302)
T ss_dssp CTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred ccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCce
Confidence 5431 1222233333344444455446666778888888887765332221 1112456677766667
Q ss_pred EEEEeCCCeEEEEeCCCCcee---EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc-eeeeeecCCCceEE
Q 014104 247 IISGSSLGSIAISGLSSDQRV---ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK-SLWETRISPNVVYS 322 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~v~~ 322 (430)
+++.+..+.|..+++...... ..+. .......++++++|++.++...++.|..++..... .+......-...++
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~ 255 (302)
T d2p4oa1 178 YVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTA 255 (302)
T ss_dssp EEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEE
T ss_pred eeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceE
Confidence 777788899999987754322 1222 22356779999999988888888999999876432 22333333355788
Q ss_pred EEEe---eCCCCeEEEEcCC
Q 014104 323 LQHL---QNDTSTLVVGGID 339 (430)
Q Consensus 323 l~~~---s~~~~~l~s~~~d 339 (430)
++ | ++|++.|+.++..
T Consensus 256 va-fg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 256 VA-FGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EE-ECCSTTTTTEEEEEECT
T ss_pred EE-EcCCCCCCCEEEEECCC
Confidence 88 8 6788877766543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.96 E-value=1e-06 Score=74.67 Aligned_cols=232 Identities=11% Similarity=0.073 Sum_probs=146.3
Q ss_pred ceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeeecC---C----ceeEEEEecCCC-EEEEE--eCCeEEEEEcCC
Q 014104 114 GVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYSLP---N----AASLVDFDFDES-KIVGL--IGTRICIWRRNG 181 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~----~~~~~~~~~~~~-~l~~~--~~~~i~vwd~~~ 181 (430)
.-..+++ +++ .+++-..++.|++||.+ ++.+..+... . ....+++..+.. .++.. .++.|..++...
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 3577888 556 55555567899999965 5666665421 1 123355555544 34432 345677777654
Q ss_pred Cccccc-CCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeCCCeEE
Q 014104 182 LRSVFP-SREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIA 257 (430)
Q Consensus 182 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~ 257 (430)
...... .........+++...+..+++....+.+.+++. +++.+..+. .+......+++.++ +.+++....+.|+
T Consensus 103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~ 181 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK 181 (279)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred cceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeecccccee
Confidence 432211 111111222333333444555566677888875 566666553 34556788888865 6777777888999
Q ss_pred EEeCCCCceeEEEec-CCCCCeEEEEEecCCCEEEEEeC-CCeEEEEeCCCCceeeeeecCC--CceEEEEEeeCCCCeE
Q 014104 258 ISGLSSDQRVATLRS-TDCTGIKTLCYNPCSRLVFAGTT-AGYASCWDLRTMKSLWETRISP--NVVYSLQHLQNDTSTL 333 (430)
Q Consensus 258 vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~--~~v~~l~~~s~~~~~l 333 (430)
+||. +++.+.++.. ........|+++|+|+.+++-.. ++.|.+|+. +++.+..+.... .....++ +.|+|.++
T Consensus 182 ~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~va-v~~dG~l~ 258 (279)
T d1q7fa_ 182 VFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVA-LMDDGSVV 258 (279)
T ss_dssp EEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEE-EETTTEEE
T ss_pred eeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEE-EeCCCcEE
Confidence 9996 5777777742 13346889999999997776544 457999985 487776664332 4577888 99999755
Q ss_pred EEEcCCCeEEEEEcCCCc
Q 014104 334 VVGGIDGVLRVLDQNTGE 351 (430)
Q Consensus 334 ~s~~~dg~i~vwd~~~~~ 351 (430)
+ ++.++.|++|......
T Consensus 259 V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 259 L-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp E-EETTTEEEEEECSCCC
T ss_pred E-EeCCCeEEEEEeeeec
Confidence 5 4578999999987554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.94 E-value=1.6e-06 Score=76.53 Aligned_cols=224 Identities=7% Similarity=0.025 Sum_probs=119.5
Q ss_pred EEEEeC--CCeEEEE--ecCCCee--EEeee--cCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCccc--cc-CCCCce
Q 014104 125 ILTGVG--DKVMRLW--SLEGYKC--VEEYS--LPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSV--FP-SREGTF 193 (430)
Q Consensus 125 l~s~~~--dg~i~iw--d~~~~~~--~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~--~~-~~~~~~ 193 (430)
|+.|+. .+.|.++ |.++++. +.... .......++++++++.|++...+.+..|.+...... .. ...+..
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 84 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGH 84 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCC
Confidence 555643 4566544 5555543 23323 234456699999999999777788888877643211 10 001111
Q ss_pred eeeeEEEEcCCc--eEEEe-cCCeEEEEE------------CCC-Cee---eEEee-cCCCCeEEEEecCC-CEEEEEe-
Q 014104 194 MKGLCMRYFDPE--AVVGC-EDGTARVFD------------MYS-RKC---SQIIR-MHCAPVTSLSLSED-QLIISGS- 251 (430)
Q Consensus 194 ~~~~~~~~~~~~--l~~~~-~dg~i~vwd------------~~~-~~~---~~~~~-~~~~~i~~~~~~~~-~~l~~~~- 251 (430)
...+.+.+++.. ++++. ..+.|..+. +.. +.. ..... ....-+.++.|+|+ ++++++.
T Consensus 85 p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~ 164 (365)
T d1jofa_ 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred cEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeC
Confidence 111222222222 11111 123333332 211 111 11111 12234789999987 6666654
Q ss_pred CCCeEEEEeCCCC-cee--EEEec-CCCCCeEEEEEecCCCEEEEEe-CCCeEEEEeCCCCceeee--ee----------
Q 014104 252 SLGSIAISGLSSD-QRV--ATLRS-TDCTGIKTLCYNPCSRLVFAGT-TAGYASCWDLRTMKSLWE--TR---------- 314 (430)
Q Consensus 252 ~dg~i~vwd~~~~-~~~--~~~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~--~~---------- 314 (430)
....|.+|+.... ... ..... ........++|+|+++++++.. .+++|.+|+...++.... ..
T Consensus 165 g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (365)
T d1jofa_ 165 TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIP 244 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeecccccccc
Confidence 3457888876533 221 22221 1345789999999999887555 578999999876543211 10
Q ss_pred -------cCCCceEEEEEeeCCCCeEEEEcC------CCeEEEEEcCC
Q 014104 315 -------ISPNVVYSLQHLQNDTSTLVVGGI------DGVLRVLDQNT 349 (430)
Q Consensus 315 -------~~~~~v~~l~~~s~~~~~l~s~~~------dg~i~vwd~~~ 349 (430)
.+......+. ++|+|++|+++.. .+.|..|++..
T Consensus 245 ~~~~~~~~~~~~~~~i~-~spdG~~lyvsnr~~~~~~~~~i~~~~~~~ 291 (365)
T d1jofa_ 245 DRDPETGKGLYRADVCA-LTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp CBCTTTSSBSEEEEEEE-ECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred ccccccccccCCccceE-ECCCCCEEEEEcccCCCccceEEEEEEecC
Confidence 1112345666 8999999987742 23466676654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.91 E-value=4.1e-07 Score=76.41 Aligned_cols=194 Identities=8% Similarity=-0.012 Sum_probs=119.1
Q ss_pred ceeEEEEecCCCEEEE--EeCCeEEEEEcCCCcccccCCC-CceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEe
Q 014104 153 AASLVDFDFDESKIVG--LIGTRICIWRRNGLRSVFPSRE-GTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~~--~~~~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
.+..++++++|+..++ ...+.+..++..+......... ......+++...+..+++....+.+++++..+...+...
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~ 94 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPF 94 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCC
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeee
Confidence 4567899999987663 3346677766655443222221 122233455444444555555555666554444443333
Q ss_pred ecCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCc
Q 014104 230 RMHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMK 308 (430)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 308 (430)
. .......+++.++ +++++-..+..+..++...... ..+..........++++|+|+.+++...++.|..+|.....
T Consensus 95 ~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~ 172 (260)
T d1rwia_ 95 D-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 172 (260)
T ss_dssp C-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC-EECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred e-eeeecccccccccceeEeecccccccccccccccee-eeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence 2 2345688999865 6666666667788888654433 22222123466889999999988888888899999987554
Q ss_pred eeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCC
Q 014104 309 SLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNT 349 (430)
Q Consensus 309 ~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~ 349 (430)
..............++ +.++|.++++....+.|..++...
T Consensus 173 ~~~~~~~~~~~p~gi~-~d~~g~l~vsd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIA-VDEAGTVYVTEHNTNQVVKLLAGS 212 (260)
T ss_dssp EEECCCSSCCSEEEEE-ECTTCCEEEEETTTTEEEEECTTC
T ss_pred eeeeeccccCCCccce-eeeeeeeeeeecCCCEEEEEeCCC
Confidence 3332223345667888 889999888888888888887653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.89 E-value=3.3e-06 Score=72.71 Aligned_cols=231 Identities=10% Similarity=0.063 Sum_probs=140.1
Q ss_pred eeEEEe-cCCeEEEEeC--------CCeEEEEecCCCeeEEeeecC-----CceeEEEEecCCCEEE-EEeCCeEEEEEc
Q 014104 115 VDQCRM-KRGLILTGVG--------DKVMRLWSLEGYKCVEEYSLP-----NAASLVDFDFDESKIV-GLIGTRICIWRR 179 (430)
Q Consensus 115 v~~~~~-~~~~l~s~~~--------dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~-~~~~~~i~vwd~ 179 (430)
...+++ ++|.|+..+. +|+|..||..+++........ .....+.+.++++.++ +...+.+..++.
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~ 99 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQT 99 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEET
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeC
Confidence 455667 5663333222 467889998887654332211 2244589999998766 666677999998
Q ss_pred CCCcccccC--CCCce---eeeeEEEEcCCceEEEe---------------cCCeEEEEECCCCeeeEEeecCCCCeEEE
Q 014104 180 NGLRSVFPS--REGTF---MKGLCMRYFDPEAVVGC---------------EDGTARVFDMYSRKCSQIIRMHCAPVTSL 239 (430)
Q Consensus 180 ~~~~~~~~~--~~~~~---~~~~~~~~~~~~l~~~~---------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~~ 239 (430)
++....... ..+.. ...+.+...+...++-. ..|.|..++. .++...... .....+.+
T Consensus 100 ~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~-~~~~pNGi 177 (314)
T d1pjxa_ 100 DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT-AFQFPNGI 177 (314)
T ss_dssp TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE-EESSEEEE
T ss_pred CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC-Ccceeeee
Confidence 876533221 11211 11233333332233221 1234444443 233332222 22334678
Q ss_pred EecCC-C-----EEEEEeCCCeEEEEeCCCCceeE------EEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCC
Q 014104 240 SLSED-Q-----LIISGSSLGSIAISGLSSDQRVA------TLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTM 307 (430)
Q Consensus 240 ~~~~~-~-----~l~~~~~dg~i~vwd~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 307 (430)
+|+++ + ++++-+..+.|..||+.....+. .+..........+++.++|++.++....+.|.+||.+.+
T Consensus 178 ~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g 257 (314)
T d1pjxa_ 178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred EECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCC
Confidence 88753 2 44555678899999876433221 222222334678999999998888878899999999988
Q ss_pred ceeeeeecCCCceEEEEEeeCCCC-eEEEEcCCCeEEEEEcC
Q 014104 308 KSLWETRISPNVVYSLQHLQNDTS-TLVVGGIDGVLRVLDQN 348 (430)
Q Consensus 308 ~~~~~~~~~~~~v~~l~~~s~~~~-~l~s~~~dg~i~vwd~~ 348 (430)
+.+..+........+++ |.|+++ +.++.+.+|.|...++.
T Consensus 258 ~~~~~i~~p~~~~t~~a-fg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 258 QPKMRIRCPFEKPSNLH-FKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SCSEEEECSSSCEEEEE-ECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEEECCCCCEEEEE-EeCCCCEEEEEECCCCcEEEEECC
Confidence 87777776667788898 899987 44666778888888865
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.82 E-value=4.6e-06 Score=71.82 Aligned_cols=233 Identities=12% Similarity=0.023 Sum_probs=141.1
Q ss_pred CceeEEEEecCCCEEEEEe--------CCeEEEEEcCCCcccccCC-CC----ceeeeeEEEEcCCceEEEecCCeEEEE
Q 014104 152 NAASLVDFDFDESKIVGLI--------GTRICIWRRNGLRSVFPSR-EG----TFMKGLCMRYFDPEAVVGCEDGTARVF 218 (430)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~--------~~~i~vwd~~~~~~~~~~~-~~----~~~~~~~~~~~~~~l~~~~~dg~i~vw 218 (430)
......+|.++|+.+++.. ++.|..||.+++....... .. .....+.+..++..++++...+.|..+
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 3445578889998776433 3568888888776432111 11 112234454555667777777788888
Q ss_pred ECCCCeeeEEeecCCC----CeEEEEecCC-CEEEEEeC---------------CCeEEEEeCCCCceeEEEecCCCCCe
Q 014104 219 DMYSRKCSQIIRMHCA----PVTSLSLSED-QLIISGSS---------------LGSIAISGLSSDQRVATLRSTDCTGI 278 (430)
Q Consensus 219 d~~~~~~~~~~~~~~~----~i~~~~~~~~-~~l~~~~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~v 278 (430)
|...+..........+ ..+.+++.++ ++.++-.. .|.|..++.. ++...... .....
T Consensus 98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~--~~~~p 174 (314)
T d1pjxa_ 98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFP 174 (314)
T ss_dssp ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSE
T ss_pred eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC--Cccee
Confidence 9765533221111111 3567888865 55444321 2345555543 34333222 22345
Q ss_pred EEEEEecCCC-----EEEEEeCCCeEEEEeCCCCceee------eeec-CCCceEEEEEeeCCCCeEEEEcCCCeEEEEE
Q 014104 279 KTLCYNPCSR-----LVFAGTTAGYASCWDLRTMKSLW------ETRI-SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLD 346 (430)
Q Consensus 279 ~~~~~~~~~~-----~l~~~~~dg~i~i~d~~~~~~~~------~~~~-~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd 346 (430)
..++|+|++. +.++-+..+.|..||+.....+. .+.. +....-.++ +..+|++.++....+.|.+||
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGia-vD~~GnlyVa~~~~g~I~~~d 253 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMD-FDEDNNLLVANWGSSHIEVFG 253 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEE-EBTTCCEEEEEETTTEEEEEC
T ss_pred eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeE-EecCCcEEEEEcCCCEEEEEe
Confidence 7899999875 44555678889999876432221 2222 123456787 899999888877889999999
Q ss_pred cCCCceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEE--cCe-EEEEeeCCCeEEEEEe
Q 014104 347 QNTGEVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAV--GMK-KVVTTHNSKYIRLWKF 423 (430)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~--~~~-~l~t~~~Dg~v~vw~~ 423 (430)
.+.++.+..+..+. ...++++| +++ .++|.+.+|+|...++
T Consensus 254 p~~g~~~~~i~~p~------------------------------------~~~t~~afg~d~~~lyVt~~~~g~i~~~~~ 297 (314)
T d1pjxa_ 254 PDGGQPKMRIRCPF------------------------------------EKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp TTCBSCSEEEECSS------------------------------------SCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEECCC------------------------------------CCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence 88777766665422 25677888 343 5678788888877776
Q ss_pred c
Q 014104 424 N 424 (430)
Q Consensus 424 ~ 424 (430)
.
T Consensus 298 ~ 298 (314)
T d1pjxa_ 298 Q 298 (314)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.74 E-value=6e-06 Score=70.70 Aligned_cols=210 Identities=10% Similarity=0.041 Sum_probs=133.5
Q ss_pred CCeeEEeeecCCceeEEEEecCCCEEEE-EeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEE
Q 014104 141 GYKCVEEYSLPNAASLVDFDFDESKIVG-LIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFD 219 (430)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd 219 (430)
..+.+..+..+.-...+++++||+.+++ ..+++|..|+.++....+....+. ...+++.+++..+++...++.+..++
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~-~~gla~~~dG~l~v~~~~~~~~~~~~ 95 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGK-VSGLAFTSNGDLVATGWNADSIPVVS 95 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSE-EEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred cccEEEECCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCC-cceEEEcCCCCeEEEecCCceEEEEE
Confidence 3455566655555667899999998884 457889888877765544443333 34456666666677777778888877
Q ss_pred CCCCee-eEEee--cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecC---------CCCCeEEEEEecC
Q 014104 220 MYSRKC-SQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRST---------DCTGIKTLCYNPC 286 (430)
Q Consensus 220 ~~~~~~-~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~~~ 286 (430)
...... ...+. ........+.+.++ .++++.+.++.+..+|...+......... .......+.++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~- 174 (302)
T d2p4oa1 96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG- 174 (302)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-
T ss_pred ecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-
Confidence 644321 11221 23456788999876 56666678889999998876543332210 112455666653
Q ss_pred CCEEEEEeCCCeEEEEeCCCCceeeee--ecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEE
Q 014104 287 SRLVFAGTTAGYASCWDLRTMKSLWET--RISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 287 ~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~ 354 (430)
+.++++.+..+.|+.++.......... .........++ ++++|.+.++...++.|..++.. ++...
T Consensus 175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia-~d~dG~l~va~~~~~~V~~i~p~-G~~~~ 242 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFA-FDVEGNLYGATHIYNSVVRIAPD-RSTTI 242 (302)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEE-EBTTCCEEEECBTTCCEEEECTT-CCEEE
T ss_pred CceeeecCCCCeEEeccccccccccccccccCCCCCcceE-ECCCCCEEEEEcCCCcEEEECCC-CCEEE
Confidence 345556677888999988754332221 11223455677 99999988888788999999865 54433
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=1.1e-05 Score=67.55 Aligned_cols=216 Identities=12% Similarity=0.000 Sum_probs=124.6
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCC---CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEc
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGD---KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRR 179 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~ 179 (430)
.+..+.+.+..-+| ||| .||-.... ..+.+.+..++................++|+++.++ .. ..+...++..
T Consensus 33 ~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~ 112 (269)
T d2hqsa1 33 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVM 112 (269)
T ss_dssp EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEE
T ss_pred EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeec
Confidence 34445667778888 677 66655443 246666777776665555666777899999999988 33 2333333332
Q ss_pred --CCCcccccCCCCceeeeeEEEEcCCc-eEEEecCC--eEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeC-
Q 014104 180 --NGLRSVFPSREGTFMKGLCMRYFDPE-AVVGCEDG--TARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSS- 252 (430)
Q Consensus 180 --~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~- 252 (430)
...................+...+.. +++...+| .|.+.++..+.. ..+..+........++|+ ..++..+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~ 191 (269)
T d2hqsa1 113 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSN 191 (269)
T ss_dssp ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEEC
T ss_pred ccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeec
Confidence 22222111111111111222223333 44444454 456666655543 333445566777888876 55555543
Q ss_pred CC--eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeeeeecCCCceEEEEEee
Q 014104 253 LG--SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLWETRISPNVVYSLQHLQ 327 (430)
Q Consensus 253 dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s 327 (430)
.+ .+.+.|...+.. ..+. .........|+|||+.|+-.+. ...|+++++..+.. ..+....+.+...+ ||
T Consensus 192 ~~~~~i~~~~~~~~~~-~~~~--~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~~~~p~-WS 266 (269)
T d2hqsa1 192 GGQQHIAKQDLATGGV-QVLS--STFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQVKFPA-WS 266 (269)
T ss_dssp SSCEEEEEEETTTCCE-EECC--CSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSEEEEEE-EC
T ss_pred CCceeeeEeecccccc-eEee--cCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCcEEeEE-eC
Confidence 34 455555554443 3332 4456778899999998874443 34688999986554 45555567777777 88
Q ss_pred C
Q 014104 328 N 328 (430)
Q Consensus 328 ~ 328 (430)
|
T Consensus 267 P 267 (269)
T d2hqsa1 267 P 267 (269)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.65 E-value=3.2e-05 Score=72.13 Aligned_cols=190 Identities=9% Similarity=-0.009 Sum_probs=114.9
Q ss_pred cCCeEEEEeC-CCeEEEEec-CCCeeEEeeecCCcee------------EEEEecCCCEEEEEeCCeEEEEEcCCCcccc
Q 014104 121 KRGLILTGVG-DKVMRLWSL-EGYKCVEEYSLPNAAS------------LVDFDFDESKIVGLIGTRICIWRRNGLRSVF 186 (430)
Q Consensus 121 ~~~~l~s~~~-dg~i~iwd~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~ 186 (430)
.++.++.++. ++.|...|. ++|+.+.++....... .+++ .+++.++++.++.+.-.|.++++...
T Consensus 61 ~~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~-~~~~i~~~~~~g~l~alda~tG~~~w 139 (571)
T d2ad6a1 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY-GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCccee-eCCeEEEEeCCCcEEeeehhhhhhhc
Confidence 5676666654 688988897 4799998876321111 1222 23445558889999999999988654
Q ss_pred cCCCC-----ceeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCC----------------------
Q 014104 187 PSREG-----TFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHC---------------------- 233 (430)
Q Consensus 187 ~~~~~-----~~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~---------------------- 233 (430)
..... ......-. ..+..++.+.. +|.|.-+|+.+|+.+..+....
T Consensus 140 ~~~~~~~~~~~~~t~~p~-v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 218 (571)
T d2ad6a1 140 EVEVCDPKVGSTLTQAPF-VAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCE-EETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred cccccccccccceeecCe-EeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCccc
Confidence 32211 11111111 12333555553 6789999999999988754211
Q ss_pred ---------------CCe-EEEEecCC-CEEEEEeC----------------CCeEEEEeCCCCceeEEEecCCCC----
Q 014104 234 ---------------APV-TSLSLSED-QLIISGSS----------------LGSIAISGLSSDQRVATLRSTDCT---- 276 (430)
Q Consensus 234 ---------------~~i-~~~~~~~~-~~l~~~~~----------------dg~i~vwd~~~~~~~~~~~~~~~~---- 276 (430)
+.+ ...++.+. ..++.+.. ...+...|+++|+.+..++..+..
T Consensus 219 ~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~ 298 (571)
T d2ad6a1 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred ccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccc
Confidence 111 12334433 44444332 356888899999999888753221
Q ss_pred ----CeEEEEEecCCC---EEEEEeCCCeEEEEeCCCCceeee
Q 014104 277 ----GIKTLCYNPCSR---LVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 277 ----~v~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
.........+++ .++.++.+|.++++|..+++++..
T Consensus 299 D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~ 341 (571)
T d2ad6a1 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA 341 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence 222223333554 566888999999999999987743
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.58 E-value=8.7e-05 Score=62.90 Aligned_cols=195 Identities=9% Similarity=0.030 Sum_probs=119.1
Q ss_pred EEecCCCEEE-EE-eCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecC---
Q 014104 158 DFDFDESKIV-GL-IGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMH--- 232 (430)
Q Consensus 158 ~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--- 232 (430)
.|++..+.|. .. ..+.|..||.++++......... ...+.+...+ .++.++.+ .+..+|..+++........
T Consensus 24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~-~~~i~~~~dg-~l~va~~~-gl~~~d~~tg~~~~l~~~~~~~ 100 (295)
T d2ghsa1 24 TFDPASGTAWWFNILERELHELHLASGRKTVHALPFM-GSALAKISDS-KQLIASDD-GLFLRDTATGVLTLHAELESDL 100 (295)
T ss_dssp EEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSC-EEEEEEEETT-EEEEEETT-EEEEEETTTCCEEEEECSSTTC
T ss_pred eEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCC-CEEEEEeC-ccEEeecccceeeEEeeeecCC
Confidence 4555444444 32 45677888887776443322222 2234444333 46666665 5888999888754333211
Q ss_pred -CCCeEEEEecCCCEEEEEeC-----CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCeEEEEeCC
Q 014104 233 -CAPVTSLSLSEDQLIISGSS-----LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGYASCWDLR 305 (430)
Q Consensus 233 -~~~i~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~i~d~~ 305 (430)
...++.+.+.++..+..++. .+.-.+|.+..++....... -.....++|+++++.++ +-+..+.|..|++.
T Consensus 101 ~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~--~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d 178 (295)
T d2ghsa1 101 PGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 178 (295)
T ss_dssp TTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred CcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec--cCCcceeeecCCCceEEEeecccceeeEeeec
Confidence 12467888887643444432 23455666666665544442 23567899999998665 55567889998874
Q ss_pred CC------ce--eeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEec
Q 014104 306 TM------KS--LWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMD 359 (430)
Q Consensus 306 ~~------~~--~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 359 (430)
.. +. .....+..+....++ +..+|.+.++.-..+.|..||. +|+.+..+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~g~pdG~~-vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP 238 (295)
T d2ghsa1 179 ARTGLPTGKAEVFIDSTGIKGGMDGSV-CDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVP 238 (295)
T ss_dssp TTTCCBSSCCEEEEECTTSSSEEEEEE-ECTTSCEEEEEETTTEEEEECT-TCCEEEEEECS
T ss_pred ccccccccceEEEeccCcccccccceE-EcCCCCEEeeeeCCCceEEecC-CCcEeeEecCC
Confidence 31 11 112223345677887 8999987777767889999995 58998888753
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.58 E-value=6.8e-05 Score=69.95 Aligned_cols=193 Identities=12% Similarity=0.117 Sum_probs=115.4
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-----------ee-EEEEecCCCEEEEEeCCeEEEEEcCCCccccc
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----------AS-LVDFDFDESKIVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
+.++.++.++.++.|.-.|.++|+.+..++.... .. .+.+ .++..++++.++.+.-.|.++++.++.
T Consensus 75 v~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~v~~~t~~g~l~alda~tG~~~W~ 153 (573)
T d1kb0a2 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL-WKGKVYVGAWDGRLIALDAATGKEVWH 153 (573)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceE-ECCcEEEEecccceeeeccccccceec
Confidence 3577888888999999999999999988753211 00 1111 244445588889998889988886542
Q ss_pred CCC-----CceeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCC-----------------------
Q 014104 188 SRE-----GTFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHC----------------------- 233 (430)
Q Consensus 188 ~~~-----~~~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~----------------------- 233 (430)
... +.......-......+++++. .|.|..+|.++|+.+..+....
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 154 QNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp EETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred ccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 211 111000111112333555432 4789999999999987763211
Q ss_pred --------CCe-EEEEecCC-CEEEEEeC-------------------CCeEEEEeCCCCceeEEEecCCC--------C
Q 014104 234 --------APV-TSLSLSED-QLIISGSS-------------------LGSIAISGLSSDQRVATLRSTDC--------T 276 (430)
Q Consensus 234 --------~~i-~~~~~~~~-~~l~~~~~-------------------dg~i~vwd~~~~~~~~~~~~~~~--------~ 276 (430)
+.+ ...++.+. ..++.+.. ...|.-.|+++++....++..+. .
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 111 12344443 34433221 23577788999988877654221 1
Q ss_pred CeEEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 277 GIKTLCYNPCS---RLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 277 ~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
+........++ ..++.++.+|.++++|..+++.+...
T Consensus 314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~ 353 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (573)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eeeecceecCCCceeeeeeccccceeEEeccccccccccc
Confidence 22223333344 36677889999999999999887543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.54 E-value=4.4e-05 Score=71.03 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=114.2
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-----------e-eEEEEecCCCEEEEEeCCeEEEEEcCCCccccc
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----------A-SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFP 187 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~ 187 (430)
+-++.++.++.++.|.-.|.++|+.+..+..... . ..++. .++..+++..++.+.-.|..+++.+..
T Consensus 64 v~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~g~l~Alda~tG~~~w~ 142 (560)
T d1kv9a2 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL-WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (560)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE-EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce-eCCeEEEEeCCCEEEEEECCCCcEEec
Confidence 4577888888999999999999999988752210 0 00111 123344488889999899888876543
Q ss_pred CCCC-----ceeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecC------------------------
Q 014104 188 SREG-----TFMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMH------------------------ 232 (430)
Q Consensus 188 ~~~~-----~~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~------------------------ 232 (430)
.... ...... -......++++.. .|.|.-+|.++|+.+..+..-
T Consensus 143 ~~~~~~~~~~~~~~~-p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (560)
T d1kv9a2 143 QQTTDPAKPYSITGA-PRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (560)
T ss_dssp EECSCTTSSCBCCSC-CEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred cCccCcccceeeeee-eeeecCcccccccceeccccceEEEEECCCceEEeeeeeccccccCCccccccccccccccccc
Confidence 2211 011101 1112222444332 378999999999998877421
Q ss_pred ------CCCe-EEEEecCC-CEEEEEeC-------------------CCeEEEEeCCCCceeEEEecCCCC--------C
Q 014104 233 ------CAPV-TSLSLSED-QLIISGSS-------------------LGSIAISGLSSDQRVATLRSTDCT--------G 277 (430)
Q Consensus 233 ------~~~i-~~~~~~~~-~~l~~~~~-------------------dg~i~vwd~~~~~~~~~~~~~~~~--------~ 277 (430)
.+.+ ..+.+.+. ++++.+.. ...|.-.|+++++.+..++..+.. .
T Consensus 222 ~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~ 301 (560)
T d1kv9a2 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (560)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred cccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccce
Confidence 0111 12344443 44433221 346788899999998777642221 1
Q ss_pred eEEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeeee
Q 014104 278 IKTLCYNPCS---RLVFAGTTAGYASCWDLRTMKSLWET 313 (430)
Q Consensus 278 v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~ 313 (430)
..-+....++ ..++.+..+|.++++|..+++++...
T Consensus 302 ~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~ 340 (560)
T d1kv9a2 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (560)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred eeeeeeecCCceeeeeeecCccceEEEEecCCCcccccc
Confidence 1222233344 36677889999999999999887543
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.52 E-value=0.00013 Score=67.79 Aligned_cols=242 Identities=14% Similarity=0.069 Sum_probs=148.0
Q ss_pred EEecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc-----eeEEEEecCCCEEEEEe------CCeEEEEEcCCCcccc
Q 014104 118 CRMKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----ASLVDFDFDESKIVGLI------GTRICIWRRNGLRSVF 186 (430)
Q Consensus 118 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~ 186 (430)
+++.++.++.++.||.+.--|.++|+.+........ ....-.-.++..+++.. .|.|.-+|+++++.++
T Consensus 111 ~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W 190 (571)
T d2ad6a1 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKW 190 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEE
T ss_pred ceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEE
Confidence 455567888899999999999999998877653211 11111223455555442 6789999999988665
Q ss_pred cCCCC---------------------------------------ceeeeeEEEEcCCceEEEec----------------
Q 014104 187 PSREG---------------------------------------TFMKGLCMRYFDPEAVVGCE---------------- 211 (430)
Q Consensus 187 ~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~---------------- 211 (430)
..+.. ..-...+..+....++.+..
T Consensus 191 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~ 270 (571)
T d2ad6a1 191 RAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKW 270 (571)
T ss_dssp EEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTT
T ss_pred EEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccc
Confidence 32110 00011122222222333222
Q ss_pred CCeEEEEECCCCeeeEEeecCCCCe-----------EEEEecCC--CEEEEEeCCCeEEEEeCCCCceeEEEecCCC---
Q 014104 212 DGTARVFDMYSRKCSQIIRMHCAPV-----------TSLSLSED--QLIISGSSLGSIAISGLSSDQRVATLRSTDC--- 275 (430)
Q Consensus 212 dg~i~vwd~~~~~~~~~~~~~~~~i-----------~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--- 275 (430)
...+...|+++|+.+..++.....+ ..+..... ..++.++.+|.+.++|..+|+.+...+....
T Consensus 271 s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~ 350 (571)
T d2ad6a1 271 TMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp TTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccc
Confidence 3567888999999988776432222 12222211 3567888999999999999998754321000
Q ss_pred ---------------------------------C--CeEEEEEecCCCEEEEEeCC------------------------
Q 014104 276 ---------------------------------T--GIKTLCYNPCSRLVFAGTTA------------------------ 296 (430)
Q Consensus 276 ---------------------------------~--~v~~~~~~~~~~~l~~~~~d------------------------ 296 (430)
+ .=...+++|+...++....+
T Consensus 351 ~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (571)
T d2ad6a1 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence 0 00125677777666654322
Q ss_pred -------------CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 297 -------------GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 297 -------------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
|.|.-+|+.+++.+.+.........+. ++..+.++++|+.||.++-+|.++|+.+.++.....
T Consensus 431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~--l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~ 506 (571)
T d2ad6a1 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT--LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC--EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcce--eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCC
Confidence 467788888888887665332211111 223466788899999999999999999999886544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.52 E-value=0.00022 Score=61.16 Aligned_cols=228 Identities=12% Similarity=0.055 Sum_probs=134.7
Q ss_pred EEeccccceeEEEe-cCC-eEEEEeCCCeEEEEecCCCeeEEeee-cCCceeEEEEecCCCEEEEEe-----CCeEEEEE
Q 014104 107 QWKAHSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEGYKCVEEYS-LPNAASLVDFDFDESKIVGLI-----GTRICIWR 178 (430)
Q Consensus 107 ~l~~h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-----~~~i~vwd 178 (430)
.+......+..++| ++| +.++-..++.|..|+.++++....+. .......++++++|+.+++.. .+.+...+
T Consensus 34 ~~~~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~ 113 (319)
T d2dg1a1 34 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT 113 (319)
T ss_dssp EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred EeccCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence 33444445567888 456 55555678899999988876555443 345566799999998877543 23344555
Q ss_pred cCCCcccc-cCC--CCceeeeeEEEEcCCceEEEec-------CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CE-
Q 014104 179 RNGLRSVF-PSR--EGTFMKGLCMRYFDPEAVVGCE-------DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QL- 246 (430)
Q Consensus 179 ~~~~~~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~-------dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~- 246 (430)
..+..... ... .........+.+.+. +..+.. .+.+..++... +.+..+...-...+.++|+++ +.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVL 191 (319)
T ss_dssp TTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEE
T ss_pred CCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEeccc-ceeEEEeeccceeeeeeeccccceE
Confidence 55443211 111 111122233333333 433332 23355555433 333333223345678999976 54
Q ss_pred EEEEeCCCeEEEEeCCCC-ceeEE------EecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeec----
Q 014104 247 IISGSSLGSIAISGLSSD-QRVAT------LRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRI---- 315 (430)
Q Consensus 247 l~~~~~dg~i~vwd~~~~-~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---- 315 (430)
.++-+..+.|..||+... ..... ...........++++++|++.++....+.|.+||. .++.+.++..
T Consensus 192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~ 270 (319)
T d2dg1a1 192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD 270 (319)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC
Confidence 455567889999997632 21111 11111224678999999998888888999999996 5888777653
Q ss_pred --CCCceEEEEEeeCCCCeEEEEcC
Q 014104 316 --SPNVVYSLQHLQNDTSTLVVGGI 338 (430)
Q Consensus 316 --~~~~v~~l~~~s~~~~~l~s~~~ 338 (430)
+...+++++ |.+++..+++.+.
T Consensus 271 ~~~~~~~~~~~-~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 271 EGHMLRSTHPQ-FIPGTNQLIICSN 294 (319)
T ss_dssp GTCSCBCCEEE-ECTTSCEEEEEEE
T ss_pred CCcCceeeeEE-EeCCCCEEEEEcC
Confidence 234567887 8887776665543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.51 E-value=0.00017 Score=61.76 Aligned_cols=200 Identities=10% Similarity=0.016 Sum_probs=115.2
Q ss_pred eEEEEecCCCEEEE-EeCCeEEEEEcCCCcccc-cCCCCceeeeeEEEEcCCceEEEec----CCeEEEEECCCCeeeEE
Q 014104 155 SLVDFDFDESKIVG-LIGTRICIWRRNGLRSVF-PSREGTFMKGLCMRYFDPEAVVGCE----DGTARVFDMYSRKCSQI 228 (430)
Q Consensus 155 ~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~ 228 (430)
.-++|.++|+.+++ ...+.|..|+.+++.... ..........+++..++..+++... .+.+...+..+......
T Consensus 43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~ 122 (319)
T d2dg1a1 43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI 122 (319)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeee
Confidence 45778888875553 356778888877764321 1111122233444444443443322 23455555554443333
Q ss_pred eec--CCCCeEEEEecCC-CEEEEEeC------CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEE-EEeCCCe
Q 014104 229 IRM--HCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVF-AGTTAGY 298 (430)
Q Consensus 229 ~~~--~~~~i~~~~~~~~-~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~ 298 (430)
... -......+++.++ ++.++... .+.+..++...+ .+..+.. .-.....++|+|+++.|+ +-+..+.
T Consensus 123 ~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~-~~~~pnGia~s~dg~~lyvad~~~~~ 200 (319)
T d2dg1a1 123 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQ-NISVANGIALSTDEKVLWVTETTANR 200 (319)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTE
T ss_pred ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEee-ccceeeeeeeccccceEEEecccCCc
Confidence 321 1234678888876 54444221 234666665433 3333322 223567899999998665 4456789
Q ss_pred EEEEeCCCC-ceeee-------eecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 299 ASCWDLRTM-KSLWE-------TRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 299 i~i~d~~~~-~~~~~-------~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
|..||+... ..... ........-.++ +.++|++.++....+.|.+||. +|+.+..+..
T Consensus 201 I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~-vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~ 266 (319)
T d2dg1a1 201 LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC-IDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 266 (319)
T ss_dssp EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE-EBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred eEEEEEcCCCceeccccceeeeccCCccceeeee-EcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence 999997642 21111 111123356787 9999998888888999999995 6998888865
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.48 E-value=1.8e-05 Score=69.61 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=134.6
Q ss_pred cccceeEEEe-cCC-eEEEEeCCCeEEEEecCC-CeeEEe--eecCCceeEEEEecCCCEEE--EE--eCCeEEEEEcCC
Q 014104 111 HSVGVDQCRM-KRG-LILTGVGDKVMRLWSLEG-YKCVEE--YSLPNAASLVDFDFDESKIV--GL--IGTRICIWRRNG 181 (430)
Q Consensus 111 h~~~v~~~~~-~~~-~l~s~~~dg~i~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~~~~l~--~~--~~~~i~vwd~~~ 181 (430)
....+.-+++ +++ +|+++.. +.+..|.+.. +..... .........+.++++++.+. .. ..+.+..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence 4445667888 455 6666654 5677776653 223222 22234455678888887543 22 235555544322
Q ss_pred Cc---cc---------------ccCCCCceeeeeEEEEcCCceEEEec-CCeEEEEECCCC-eee--EEee--cCCCCeE
Q 014104 182 LR---SV---------------FPSREGTFMKGLCMRYFDPEAVVGCE-DGTARVFDMYSR-KCS--QIIR--MHCAPVT 237 (430)
Q Consensus 182 ~~---~~---------------~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~-~~~--~~~~--~~~~~i~ 237 (430)
.. .+ .....+.....+.+.+++..++++.. ...|.+|+.... ... .... .......
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence 10 00 01111222344666667777666653 457888876433 221 1221 2345678
Q ss_pred EEEecCC-CEE-EEEeCCCeEEEEeCCCCceeE--E---Eec-------------CCCCCeEEEEEecCCCEEEEEeC--
Q 014104 238 SLSLSED-QLI-ISGSSLGSIAISGLSSDQRVA--T---LRS-------------TDCTGIKTLCYNPCSRLVFAGTT-- 295 (430)
Q Consensus 238 ~~~~~~~-~~l-~~~~~dg~i~vwd~~~~~~~~--~---~~~-------------~~~~~v~~~~~~~~~~~l~~~~~-- 295 (430)
.++|+|+ +++ ++...+++|.+||+..++... . ... ........+.++|+|++|+++..
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence 9999987 555 455578899999987654321 1 110 01113567899999999987643
Q ss_pred ----CCeEEEEeCCCCceeeee------ecCCCceEEEEEeeC-CCCeEEEEc-CCCeEEEEEcCCC
Q 014104 296 ----AGYASCWDLRTMKSLWET------RISPNVVYSLQHLQN-DTSTLVVGG-IDGVLRVLDQNTG 350 (430)
Q Consensus 296 ----dg~i~i~d~~~~~~~~~~------~~~~~~v~~l~~~s~-~~~~l~s~~-~dg~i~vwd~~~~ 350 (430)
.+.|..|++.....+... .........++ ++| +|++|+++. .++.|.+|+++..
T Consensus 277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~-~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVS-PCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEE-ECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEE-ecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 234777777643222211 11223456677 887 789776664 7799999987644
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.46 E-value=0.00049 Score=63.79 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=145.1
Q ss_pred CCeEEEEeCCCeEEEEecCCCeeEEeeecCCcee--E---EEEecCCCEEEEEe------CCeEEEEEcCCCcccccCCC
Q 014104 122 RGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAAS--L---VDFDFDESKIVGLI------GTRICIWRRNGLRSVFPSRE 190 (430)
Q Consensus 122 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~---~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~~~~ 190 (430)
++.++.+..|+.+.-.|..+|+.+..+....... . .-.-.++..+++.. .|.|.-+|.++++.++..+.
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 4478889999999999999999988776432211 1 11112444444322 36799999999886543321
Q ss_pred Cc--------------------------------eeeeeEEEEcCCceEEEe-------------------cCCeEEEEE
Q 014104 191 GT--------------------------------FMKGLCMRYFDPEAVVGC-------------------EDGTARVFD 219 (430)
Q Consensus 191 ~~--------------------------------~~~~~~~~~~~~~l~~~~-------------------~dg~i~vwd 219 (430)
.. .-....+.+....++.+. ....|...|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld 276 (560)
T d1kv9a2 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (560)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence 10 000111221122222211 034677789
Q ss_pred CCCCeeeEEeecCCCCe-----------EEEEecCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC---------
Q 014104 220 MYSRKCSQIIRMHCAPV-----------TSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCT--------- 276 (430)
Q Consensus 220 ~~~~~~~~~~~~~~~~i-----------~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--------- 276 (430)
+.+++....++.....+ ..+.. ++ ..++.++.+|.+.++|..+++.+...+.....
T Consensus 277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~-~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~ 355 (560)
T d1kv9a2 277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNI-DGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (560)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred CCccceeEEEeccccccccccccceeeeeeeec-CCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence 99999887665432222 22222 22 46778899999999999999987655421110
Q ss_pred --------------------------CeEEEEEecCCCEEEEEeC-----------------------------------
Q 014104 277 --------------------------GIKTLCYNPCSRLVFAGTT----------------------------------- 295 (430)
Q Consensus 277 --------------------------~v~~~~~~~~~~~l~~~~~----------------------------------- 295 (430)
.-...+++|+...++....
T Consensus 356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (560)
T d1kv9a2 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (560)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence 0114567777776665432
Q ss_pred -CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 296 -AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 296 -dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.|.+.-+|+.+++.+.+..... ...+-. +...+.++++|+.||.++-+|.++|+.+.++.....
T Consensus 436 ~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~-l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~ 500 (560)
T d1kv9a2 436 VSGALLAWDPVKQKAAWKVPYPT-HWNGGT-LSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG 500 (560)
T ss_dssp CEEEEEEEETTTTEEEEEEEESS-SCCCCE-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccceEEEeCCCCeEeeeccCCC-CCCCce-eEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCC
Confidence 2568888999998887765432 121111 334567888999999999999999999999886433
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.43 E-value=0.00033 Score=59.17 Aligned_cols=209 Identities=11% Similarity=0.055 Sum_probs=132.0
Q ss_pred CC-eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccc-cCC-C-Cc--eee
Q 014104 122 RG-LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVF-PSR-E-GT--FMK 195 (430)
Q Consensus 122 ~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~-~~~-~-~~--~~~ 195 (430)
++ +..+--..+.|..||..+++. ..+..+..+..+++..++..++++. ..+.++|.++++... ... . .. ...
T Consensus 29 ~~~l~wvDi~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~n 106 (295)
T d2ghsa1 29 SGTAWWFNILERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELESDLPGNRSN 106 (295)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSSTTCTTEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEe-CccEEeecccceeeEEeeeecCCCcccce
Confidence 44 444444568899999988764 4566666777888889988877765 569999999876422 111 1 11 112
Q ss_pred eeEEEEcCCceEEEec-----CCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-C-EEEEEeCCCeEEEEeCCCC----
Q 014104 196 GLCMRYFDPEAVVGCE-----DGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-Q-LIISGSSLGSIAISGLSSD---- 264 (430)
Q Consensus 196 ~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg~i~vwd~~~~---- 264 (430)
...+.+.+. +..++. .+.-.+|.+..++....... -...+.+.++++ + ++++-+..+.|..+++...
T Consensus 107 d~~vd~~G~-iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~ 184 (295)
T d2ghsa1 107 DGRMHPSGA-LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLP 184 (295)
T ss_dssp EEEECTTSC-EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCB
T ss_pred eeEECCCCC-EEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeeccccccc
Confidence 222222332 444432 22345565556655444433 334578899876 4 5566677889999987421
Q ss_pred --ce-e-EEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 265 --QR-V-ATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 265 --~~-~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
+. + ..+.+ ..+....++++.+|++.++.-..+.|..||. .++.+..+......+++++|--++.+.|+..
T Consensus 185 ~~~~~~~~~~~~-~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 185 TGKAEVFIDSTG-IKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp SSCCEEEEECTT-SSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred ccceEEEeccCc-ccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence 11 1 11122 3446889999999998887777888999996 5888888876666789998335776655443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.38 E-value=0.00038 Score=64.91 Aligned_cols=191 Identities=8% Similarity=-0.013 Sum_probs=114.0
Q ss_pred cCCeEE-EEeCCCeEEEEec-CCCeeEEeeecCCc------------eeEEEEecC----CCEEE-EEeCCeEEEEEcCC
Q 014104 121 KRGLIL-TGVGDKVMRLWSL-EGYKCVEEYSLPNA------------ASLVDFDFD----ESKIV-GLIGTRICIWRRNG 181 (430)
Q Consensus 121 ~~~~l~-s~~~dg~i~iwd~-~~~~~~~~~~~~~~------------~~~~~~~~~----~~~l~-~~~~~~i~vwd~~~ 181 (430)
-++.|+ +++.++.+...|. ++|+.+..+..... ..-+++-++ +..++ ++.|+.+.-.|.++
T Consensus 61 ~~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~t 140 (596)
T d1w6sa_ 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAET 140 (596)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred ECCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence 466554 4555677888886 58999988763211 012344332 22344 88899999999999
Q ss_pred CcccccCCCCc-----eeeeeEEEEcCCceEEEec------CCeEEEEECCCCeeeEEeecCC-----------------
Q 014104 182 LRSVFPSREGT-----FMKGLCMRYFDPEAVVGCE------DGTARVFDMYSRKCSQIIRMHC----------------- 233 (430)
Q Consensus 182 ~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~----------------- 233 (430)
++.+....... ... ..-...+..++++.. .|.|+-+|+.+|+.+..+....
T Consensus 141 G~~~w~~~~~d~~~~~~~t-~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~ 219 (596)
T d1w6sa_ 141 GETVWKVENSDIKVGSTLT-IAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH 219 (596)
T ss_dssp CCEEEEEECCCGGGTCBCC-SCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred Cceeccccccccccccccc-cCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccccccc
Confidence 88665432211 111 111122334566543 4899999999999988764210
Q ss_pred --------------------CCe-EEEEecCC-CEEEEEeC----------------CCeEEEEeCCCCceeEEEecCCC
Q 014104 234 --------------------APV-TSLSLSED-QLIISGSS----------------LGSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 234 --------------------~~i-~~~~~~~~-~~l~~~~~----------------dg~i~vwd~~~~~~~~~~~~~~~ 275 (430)
..+ ..+.+.+. ++++.+.. ...+.-.|+++|+.+..++..+.
T Consensus 220 ~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~ 299 (596)
T d1w6sa_ 220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH 299 (596)
T ss_dssp GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred ccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceec
Confidence 111 12344443 44444432 34588889999999888765322
Q ss_pred C--------CeEEEEE-ecCC---CEEEEEeCCCeEEEEeCCCCceeee
Q 014104 276 T--------GIKTLCY-NPCS---RLVFAGTTAGYASCWDLRTMKSLWE 312 (430)
Q Consensus 276 ~--------~v~~~~~-~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~ 312 (430)
. .+.-+.. ..+| +.++....+|.++++|..+++++..
T Consensus 300 D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~ 348 (596)
T d1w6sa_ 300 DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (596)
T ss_dssp CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence 1 1222221 2344 3677888999999999999987753
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.33 E-value=0.00032 Score=65.40 Aligned_cols=191 Identities=12% Similarity=0.033 Sum_probs=112.7
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCCc--------e--eEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCC
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNA--------A--SLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSR 189 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~ 189 (430)
+.++.|+.++.++.|.-.|..+|+.+.++..... . ..+++ .++..++++.++.+.-.|.++++.++...
T Consensus 66 v~~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~-~~~~i~~~t~~~~l~alda~tG~~~W~~~ 144 (582)
T d1flga_ 66 VSDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI-YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp EETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE-ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred EECCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE-eCCceEEecCCCeEEEecccccceeeeec
Confidence 4578888899999999999999999988753211 0 01111 23444558889999999999887654322
Q ss_pred CCc-----eeeee-EEEEc---CCceEEE-------ecCCeEEEEECCCCeeeEEeecCCC-------------------
Q 014104 190 EGT-----FMKGL-CMRYF---DPEAVVG-------CEDGTARVFDMYSRKCSQIIRMHCA------------------- 234 (430)
Q Consensus 190 ~~~-----~~~~~-~~~~~---~~~l~~~-------~~dg~i~vwd~~~~~~~~~~~~~~~------------------- 234 (430)
... ..... .+... ...++.. +..+.|.-+|.++|+.+..+.....
T Consensus 145 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~ 224 (582)
T d1flga_ 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred ccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccc
Confidence 110 00000 11111 1112222 2356799999999998876542211
Q ss_pred ---------------------Ce-EEEEecCC-CEEEEEe------------------------CCCeEEEEeCCCCcee
Q 014104 235 ---------------------PV-TSLSLSED-QLIISGS------------------------SLGSIAISGLSSDQRV 267 (430)
Q Consensus 235 ---------------------~i-~~~~~~~~-~~l~~~~------------------------~dg~i~vwd~~~~~~~ 267 (430)
.+ ..+++.+. ++++.+. ....+.-.|+++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~ 304 (582)
T d1flga_ 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhh
Confidence 11 22455543 4554432 1236788899999998
Q ss_pred EEEecCCCC--------CeEEEEEe-cCC---CEEEEEeCCCeEEEEeCCCCceee
Q 014104 268 ATLRSTDCT--------GIKTLCYN-PCS---RLVFAGTTAGYASCWDLRTMKSLW 311 (430)
Q Consensus 268 ~~~~~~~~~--------~v~~~~~~-~~~---~~l~~~~~dg~i~i~d~~~~~~~~ 311 (430)
..++..+.. ...-+.+. .++ ..++.++.++.++++|..+++.+.
T Consensus 305 W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~ 360 (582)
T d1flga_ 305 WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQN 360 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred hcccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccc
Confidence 887643221 11112222 133 256677889999999999987664
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.30 E-value=0.0012 Score=61.44 Aligned_cols=236 Identities=15% Similarity=0.118 Sum_probs=143.6
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCc-----eeEEEEecCCCEEEEEe------CCeEEEEEcCCCcccccCCCC-
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNA-----ASLVDFDFDESKIVGLI------GTRICIWRRNGLRSVFPSREG- 191 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~~~~~- 191 (430)
+++.++.|+.|.--|.++|+.+..+...+. ...--.-.++..+++.. .|.|.-+|.++++.++..+..
T Consensus 123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~ 202 (596)
T d1w6sa_ 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATG 202 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSS
T ss_pred EEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccC
Confidence 688899999999999999999988764211 11111122444555432 488999999998876532110
Q ss_pred --------------------------------------ceeeeeEEEEcCCceEEEec----------------CCeEEE
Q 014104 192 --------------------------------------TFMKGLCMRYFDPEAVVGCE----------------DGTARV 217 (430)
Q Consensus 192 --------------------------------------~~~~~~~~~~~~~~l~~~~~----------------dg~i~v 217 (430)
..-...+.......++.+.. ...|..
T Consensus 203 ~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivA 282 (596)
T d1w6sa_ 203 PDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFG 282 (596)
T ss_dssp CHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEE
T ss_pred CccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccc
Confidence 00011122222222333322 345778
Q ss_pred EECCCCeeeEEeecCC---------CCeEEEEe--cCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCC--------
Q 014104 218 FDMYSRKCSQIIRMHC---------APVTSLSL--SED---QLIISGSSLGSIAISGLSSDQRVATLRSTDC-------- 275 (430)
Q Consensus 218 wd~~~~~~~~~~~~~~---------~~i~~~~~--~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------- 275 (430)
.|+.+|+.+..++... .....+.. .++ ..++.+..+|.+.++|..+|+.+...+....
T Consensus 283 lD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d 362 (596)
T d1w6sa_ 283 RDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD 362 (596)
T ss_dssp EETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC
T ss_pred cccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccccccc
Confidence 8999999887765321 12222222 122 4678889999999999999998754431000
Q ss_pred ----CC--------------------------eEEEEEecCCCEEEEEeC------------------------------
Q 014104 276 ----TG--------------------------IKTLCYNPCSRLVFAGTT------------------------------ 295 (430)
Q Consensus 276 ----~~--------------------------v~~~~~~~~~~~l~~~~~------------------------------ 295 (430)
.+ -..++++|+..+++....
T Consensus 363 ~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 442 (596)
T d1w6sa_ 363 LKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGP 442 (596)
T ss_dssp TTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECT
T ss_pred ccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCc
Confidence 00 012456666655554321
Q ss_pred ---------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 296 ---------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 296 ---------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
-|.|.-||+.+++.+.+..... ...+-. ++..|.+++.|+.||.++.+|.++|+.+.++.....
T Consensus 443 ~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~-~~~gg~-lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~ 515 (596)
T d1w6sa_ 443 KGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGT-MATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG 515 (596)
T ss_dssp TSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccCcccCCCcceEEEEeCCCCceecccCCCC-CCccce-eEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC
Confidence 1467888888888877654322 222212 334577888899999999999999999999986543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.24 E-value=0.00091 Score=62.11 Aligned_cols=239 Identities=15% Similarity=0.109 Sum_probs=142.2
Q ss_pred ecCCeEEEEeCCCeEEEEecCCCeeEEeeecCC-c---e--eEEEEecCCCEEEEEe------CCeEEEEEcCCCccccc
Q 014104 120 MKRGLILTGVGDKVMRLWSLEGYKCVEEYSLPN-A---A--SLVDFDFDESKIVGLI------GTRICIWRRNGLRSVFP 187 (430)
Q Consensus 120 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~---~--~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~ 187 (430)
+.++.++.++.|+.+.-.|..+|+.+....... . . .....-.++..+++.. .|.|.-+|.++++.++.
T Consensus 126 ~~~~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~ 205 (573)
T d1kb0a2 126 LWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (573)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred EECCcEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceee
Confidence 345577788889999999999999887665321 1 1 1111222444455322 46799999999886543
Q ss_pred CCCCc-----e-------------------------eee-eEEEEcCCc--eEEEe-------------------cCCeE
Q 014104 188 SREGT-----F-------------------------MKG-LCMRYFDPE--AVVGC-------------------EDGTA 215 (430)
Q Consensus 188 ~~~~~-----~-------------------------~~~-~~~~~~~~~--l~~~~-------------------~dg~i 215 (430)
.+... . ..+ .....+... ++.+. ....|
T Consensus 206 ~~t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~sv 285 (573)
T d1kb0a2 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (573)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eeeccccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceE
Confidence 21100 0 000 011222222 22211 12356
Q ss_pred EEEECCCCeeeEEeecCCCC---------e--EEEEecCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCCC-----
Q 014104 216 RVFDMYSRKCSQIIRMHCAP---------V--TSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLRSTDCT----- 276 (430)
Q Consensus 216 ~vwd~~~~~~~~~~~~~~~~---------i--~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~----- 276 (430)
...|+.+++....++..... . ..+.. ++ ..++.++.+|.+.++|..+|+.+...+.....
T Consensus 286 vAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~-~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~ 364 (573)
T d1kb0a2 286 VALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (573)
T ss_dssp EEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEecccchheeecccccCcccccccccceeeecceec-CCCceeeeeeccccceeEEecccccccccccccccccccccc
Confidence 77788888877665532211 1 12222 22 46788889999999999999987665421100
Q ss_pred -----------------------------CeEEEEEecCCCEEEEEeCC-------------------------------
Q 014104 277 -----------------------------GIKTLCYNPCSRLVFAGTTA------------------------------- 296 (430)
Q Consensus 277 -----------------------------~v~~~~~~~~~~~l~~~~~d------------------------------- 296 (430)
.-..++++|+...++....+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 444 (573)
T d1kb0a2 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (573)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred ccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccccc
Confidence 01124677776666653222
Q ss_pred ------------CeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 297 ------------GYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 297 ------------g~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
|.+.-||+.+++.+.+.+.......+ . .+..+.++++|+.||.++.+|.++|+.+.++.....
T Consensus 445 ~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg-~-lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~ 519 (573)
T d1kb0a2 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGG-T-LTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG 519 (573)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCC-E-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred ccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCc-e-EEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCC
Confidence 35777888888888776544211111 1 334678888999999999999999999999886443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=0.00086 Score=60.53 Aligned_cols=224 Identities=6% Similarity=-0.026 Sum_probs=122.1
Q ss_pred ceeEEEe-cCC-eEEEE---------eCCCeEEEEecCCCeeEEeeec---CCceeEEEEecCCCEEEEEeCCeEEEEEc
Q 014104 114 GVDQCRM-KRG-LILTG---------VGDKVMRLWSLEGYKCVEEYSL---PNAASLVDFDFDESKIVGLIGTRICIWRR 179 (430)
Q Consensus 114 ~v~~~~~-~~~-~l~s~---------~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~i~vwd~ 179 (430)
.+....+ +|+ +++.+ +..+.+.++|+.+++....... ........|+|||+.++-..++.+.+.+.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~ 141 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAH 141 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESS
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEec
Confidence 3444455 566 55554 3357889999998765433222 22334588999999999777889998888
Q ss_pred CCCcccccCCC---Cc----------------eeeeeEEEEcCCceEEEecC-C--------------------------
Q 014104 180 NGLRSVFPSRE---GT----------------FMKGLCMRYFDPEAVVGCED-G-------------------------- 213 (430)
Q Consensus 180 ~~~~~~~~~~~---~~----------------~~~~~~~~~~~~~l~~~~~d-g-------------------------- 213 (430)
.++........ +. ....+-|++++..|+....| .
T Consensus 142 ~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~ 221 (465)
T d1xfda1 142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA 221 (465)
T ss_dssp SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred CCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecccc
Confidence 76553211111 11 11244567777776655322 2
Q ss_pred -------eEEEEECCCCeeeEEee------cCCCCeEEEEecCCCEEEEE--eCC---CeEEEEeCCCCceeEEEecCCC
Q 014104 214 -------TARVFDMYSRKCSQIIR------MHCAPVTSLSLSEDQLIISG--SSL---GSIAISGLSSDQRVATLRSTDC 275 (430)
Q Consensus 214 -------~i~vwd~~~~~~~~~~~------~~~~~i~~~~~~~~~~l~~~--~~d---g~i~vwd~~~~~~~~~~~~~~~ 275 (430)
.+.++|+.++....... ....-+..+.|.|+..++.. ..+ ..+.++|..+++....+.....
T Consensus 222 G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~ 301 (465)
T d1xfda1 222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESE 301 (465)
T ss_dssp TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECS
T ss_pred CCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCC
Confidence 23444544332211111 11123567888877433333 222 3688899999987665543232
Q ss_pred CCe----EEEEEecCCCEEE---EEeCCC--eEEEEeCC------CCceeeeeecCCCceEEEEEeeCCCCeEE-EEc
Q 014104 276 TGI----KTLCYNPCSRLVF---AGTTAG--YASCWDLR------TMKSLWETRISPNVVYSLQHLQNDTSTLV-VGG 337 (430)
Q Consensus 276 ~~v----~~~~~~~~~~~l~---~~~~dg--~i~i~d~~------~~~~~~~~~~~~~~v~~l~~~s~~~~~l~-s~~ 337 (430)
..| ....|+|+|+.++ ..-.+| .++.+++. .++.+..+....-.|..+..++++++.|+ ++.
T Consensus 302 ~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~ 379 (465)
T d1xfda1 302 AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLST 379 (465)
T ss_dssp SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEES
T ss_pred ceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEe
Confidence 222 3457899998432 222222 34444332 23334445444455666655788777664 444
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=0.00013 Score=66.08 Aligned_cols=220 Identities=11% Similarity=0.001 Sum_probs=123.5
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecC----CceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeee
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLP----NAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKG 196 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~ 196 (430)
+++.++.-..+|.|.+||+.+++....+... -.+....++||+++++...+.. .+|
T Consensus 26 ~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~-~~~------------------- 85 (465)
T d1xfda1 26 SDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVE-PIY------------------- 85 (465)
T ss_dssp SSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCC-CCS-------------------
T ss_pred CCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEccc-cee-------------------
Confidence 3446655556677777777776654333332 1233455666666654333210 000
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCCeeeEEee--cCCCCeEEEEecCC-CEEEEEeCCCeEEEEeCCCCceeEEEecC
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIR--MHCAPVTSLSLSED-QLIISGSSLGSIAISGLSSDQRVATLRST 273 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 273 (430)
--+..+.+.++|+.+++...... .....+....|+|+ +.+|-.. ++.+.+.+..++..++.....
T Consensus 86 -----------r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g 153 (465)
T d1xfda1 86 -----------QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTG 153 (465)
T ss_dssp -----------SSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCC
T ss_pred -----------EeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEeccc
Confidence 00235688999998886543322 22345666889987 6666554 678889998877766555432
Q ss_pred CCCC-----------------eEEEEEecCCCEEEEEeC-CC---------------------------------eEEEE
Q 014104 274 DCTG-----------------IKTLCYNPCSRLVFAGTT-AG---------------------------------YASCW 302 (430)
Q Consensus 274 ~~~~-----------------v~~~~~~~~~~~l~~~~~-dg---------------------------------~i~i~ 302 (430)
.... -.++-|||||+.||.... +. .+.++
T Consensus 154 ~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~ 233 (465)
T d1xfda1 154 KEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI 233 (465)
T ss_dssp BTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred CcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEE
Confidence 2222 246789999999987632 12 24445
Q ss_pred eCCCCceeeee------ecCCCceEEEEEeeCCCCeEEEEcC----CCeEEEEEcCCCceEEEEEeccCc-----ceeee
Q 014104 303 DLRTMKSLWET------RISPNVVYSLQHLQNDTSTLVVGGI----DGVLRVLDQNTGEVLSRCVMDIGS-----ASSSS 367 (430)
Q Consensus 303 d~~~~~~~~~~------~~~~~~v~~l~~~s~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~-----~~~~~ 367 (430)
|+.++...... .....-+..+. |+|+++.++.... ...|.++|..+|++...+...... .....
T Consensus 234 d~~~~~~~~~~~~~~~~~~~~~y~~~~~-W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~ 312 (465)
T d1xfda1 234 GLNGPTHDLEMMPPDDPRMREYYITMVK-WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV 312 (465)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEE-ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE
T ss_pred ecCCCcEEEEEeccCcCccccceeeeeE-EcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCcee
Confidence 55443221111 11112355666 8888886655432 236888999999876665543321 12345
Q ss_pred ccCCce
Q 014104 368 NKVSGV 373 (430)
Q Consensus 368 ~s~d~~ 373 (430)
+++||.
T Consensus 313 ~~~dg~ 318 (465)
T d1xfda1 313 FSKDGR 318 (465)
T ss_dssp ECTTSC
T ss_pred EccCCC
Confidence 666664
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.01 E-value=0.0018 Score=53.65 Aligned_cols=220 Identities=10% Similarity=0.008 Sum_probs=110.9
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCC-----eEEEEEcCCCcccccCCCC-----
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGT-----RICIWRRNGLRSVFPSREG----- 191 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~-----~i~vwd~~~~~~~~~~~~~----- 191 (430)
.++-.+ +|.|.+.|+.+++.......+.......|+|||+.|+ .. .++ .|.+++..+++........
T Consensus 14 ~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~ 92 (281)
T d1k32a2 14 RIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTG 92 (281)
T ss_dssp EEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEET
T ss_pred EEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccC
Confidence 555443 4578888999988765555556677789999999998 33 222 4777788777643221111
Q ss_pred --ceeeeeEEEEcCCceEEEecC------CeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEEeCCC--------
Q 014104 192 --TFMKGLCMRYFDPEAVVGCED------GTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISGSSLG-------- 254 (430)
Q Consensus 192 --~~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~~~dg-------- 254 (430)
.......+.+++..++..... ..+...+...+..... +........+.++ ..++....+.
T Consensus 93 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (281)
T d1k32a2 93 RRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATHILFADGRRVIGRNTFELPHWKGYRG 169 (281)
T ss_dssp TEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSEEEEETTEEEEEESCSCCTTSTTCCS
T ss_pred ccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccceeeecCCCeEEEeeccccceeeeecc
Confidence 111223444455555443221 2234444433332211 1222223333333 2222222111
Q ss_pred ---eEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC--CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 255 ---SIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT--AGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 255 ---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
................. .........++++. .+..... ...|.++|+.+++.. .+..+.. ..... ++||
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~-~~~~~-~SpD 243 (281)
T d1k32a2 170 GTRGKIWIEVNSGAFKKIVD--MSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKDLR-KHTSFTD-YYPRH-LNTD 243 (281)
T ss_dssp TTCCEEEEEEETTEEEEEEC--CSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCSCE-ECCCCCS-SCEEE-EEES
T ss_pred CCcceeeeeccccceeeccC--Cccccceeeeeccc-cceecccccccceEEEeCCCCceE-EeecCCC-ccccc-CcCC
Confidence 11122222222222222 23344455555542 2333333 335888888765543 3332221 22234 8899
Q ss_pred CCeEEEEcCCCeEEEEEcCCCceEE
Q 014104 330 TSTLVVGGIDGVLRVLDQNTGEVLS 354 (430)
Q Consensus 330 ~~~l~s~~~dg~i~vwd~~~~~~~~ 354 (430)
|+.|+.. .++.|+++|+.+++..+
T Consensus 244 G~~I~f~-~~~~l~~~d~~~g~~~~ 267 (281)
T d1k32a2 244 GRRILFS-KGGSIYIFNPDTEKIEK 267 (281)
T ss_dssp SSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred CCEEEEE-eCCEEEEEECCCCCEEE
Confidence 9988764 46889999998877543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.98 E-value=0.00019 Score=62.29 Aligned_cols=219 Identities=11% Similarity=0.055 Sum_probs=121.4
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeE--EEEecCCCEEE--EEeCCeEEEEEcCCCcccccCCCCceeeeeEE
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASL--VDFDFDESKIV--GLIGTRICIWRRNGLRSVFPSREGTFMKGLCM 199 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 199 (430)
.+.||+..|.|+|+-+.+++.++.+..-..... ..++...+.++ +....+-.+...+.++........|. .+++
T Consensus 15 ~f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP--~~S~ 92 (459)
T d1fwxa2 15 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHV--HMSF 92 (459)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCE--EEEE
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCC--cccc
Confidence 577899999999999999999988764211100 00000000000 00000000000000100000111111 1111
Q ss_pred ---EEcCCc-eEEEecCCeEEEEECCCCeeeEEeec-CCCCeEEEEec--CC-CEEEEEeCC------------------
Q 014104 200 ---RYFDPE-AVVGCEDGTARVFDMYSRKCSQIIRM-HCAPVTSLSLS--ED-QLIISGSSL------------------ 253 (430)
Q Consensus 200 ---~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~i~~~~~~--~~-~~l~~~~~d------------------ 253 (430)
.+++.+ ++.-..++.|.+.|+.+.++.+.+.. ....+..+... |+ .+++.++.+
T Consensus 93 TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~ 172 (459)
T d1fwxa2 93 TEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 172 (459)
T ss_dssp ETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EE
T ss_pred cCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcc
Confidence 123444 45555788999999999988665543 23456666665 34 677776653
Q ss_pred CeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCC---------------eEEEEe---------------
Q 014104 254 GSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAG---------------YASCWD--------------- 303 (430)
Q Consensus 254 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---------------~i~i~d--------------- 303 (430)
+.+.++|..+.+....+.. .+....+.++|+|+++++.+.+. .+.+++
T Consensus 173 ~~~t~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~e 250 (459)
T d1fwxa2 173 NVFTAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 250 (459)
T ss_dssp EEEEEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred eEEEEEecCCceEEEEeee--CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEE
Confidence 2367889999888887773 44677899999999999876431 133333
Q ss_pred --------CCCC---ceeeeeecCCCceEEEEEeeCCCCeEEEEc-CCCeEEEEEcC
Q 014104 304 --------LRTM---KSLWETRISPNVVYSLQHLQNDTSTLVVGG-IDGVLRVLDQN 348 (430)
Q Consensus 304 --------~~~~---~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~-~dg~i~vwd~~ 348 (430)
.+.. ..+..+... .....+. ++|||+++++++ .+.++.|+|++
T Consensus 251 ingV~VVD~~~~~~~~v~~yIPVp-KsPHGV~-vSPDGKyi~VaGKLs~tVSViD~~ 305 (459)
T d1fwxa2 251 LNGVKVVDGRKEASSLFTRYIPIA-NNPHGCN-MAPDKKHLCVAGKLSPTVTVLDVT 305 (459)
T ss_dssp ETTEEEEECSGG--CSSEEEEEEE-SSCCCEE-ECTTSSEEEEECTTSSBEEEEEGG
T ss_pred eCCceeecccccCCcceeEEEecC-CCCCceE-ECCCCCEEEEeCCcCCcEEEEEeh
Confidence 3221 111111111 2234566 899999887665 78999999996
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.98 E-value=0.001 Score=55.14 Aligned_cols=108 Identities=7% Similarity=-0.057 Sum_probs=66.2
Q ss_pred EEecC--CCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec-C-----CeEEEEECCCCeeeEEe
Q 014104 158 DFDFD--ESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE-D-----GTARVFDMYSRKCSQII 229 (430)
Q Consensus 158 ~~~~~--~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~~~~~~~ 229 (430)
.++|+ |+.++-..++.|.+.|+.+++...............|++++..|+.... + ..|.+++..+++..+..
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt 84 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT 84 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC
T ss_pred ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee
Confidence 46788 9999966788899999998875433333333455678888888765432 2 24788888777654332
Q ss_pred e------cCCCCeEEEEecCC-CEEEEEeC------CCeEEEEeCCCCc
Q 014104 230 R------MHCAPVTSLSLSED-QLIISGSS------LGSIAISGLSSDQ 265 (430)
Q Consensus 230 ~------~~~~~i~~~~~~~~-~~l~~~~~------dg~i~vwd~~~~~ 265 (430)
. ..........|+|+ +.++.... ...+...+...+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 133 (281)
T d1k32a2 85 YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN 133 (281)
T ss_dssp CCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred ecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence 1 11224567788876 55555422 2234555555443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.66 E-value=0.0098 Score=48.63 Aligned_cols=221 Identities=14% Similarity=0.176 Sum_probs=138.7
Q ss_pred cCCeEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCc---ccccCCCC-ceeee
Q 014104 121 KRGLILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLR---SVFPSREG-TFMKG 196 (430)
Q Consensus 121 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~---~~~~~~~~-~~~~~ 196 (430)
|...+++--...++.++|+++.+.++.+..++.+....|-. .+.|+--.+..|+-|++++.. .++..+.. ....+
T Consensus 72 P~~~IiALrag~~LQiFnletK~klks~~~~e~VvfWkWis-~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QI 150 (327)
T d1utca2 72 PASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQI 150 (327)
T ss_dssp SSSSEEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEESS-SSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEE
T ss_pred CCCcEEEEecCCeEEEEehhHhhhhceEEcCCCcEEEEecC-CCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceE
Confidence 44433333336799999999999999999988887777754 455666677889999997543 23332221 11223
Q ss_pred eEEEEcCC--c-eEEE--e----cCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC----CEEEEEe---CCCeEEEEe
Q 014104 197 LCMRYFDP--E-AVVG--C----EDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED----QLIISGS---SLGSIAISG 260 (430)
Q Consensus 197 ~~~~~~~~--~-l~~~--~----~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~----~~l~~~~---~dg~i~vwd 260 (430)
+....+.. . +++| . -.|.+.+|..+. +.-+.+++|.+....+.+..+ ..++.+. ..+.+.+.+
T Consensus 151 InY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiE 229 (327)
T d1utca2 151 INYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIE 229 (327)
T ss_dssp EEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEE
Confidence 33333322 2 2222 1 237788999854 455678888776666655421 2343332 236788888
Q ss_pred CCCCc---e---eE--EEec---CCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCC
Q 014104 261 LSSDQ---R---VA--TLRS---TDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQND 329 (430)
Q Consensus 261 ~~~~~---~---~~--~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~ 329 (430)
+.+.. . .+ .+.- ...+-..++..++.-..++.-+.-|.|++||+.++.++..-+-..+.|...+ -..+
T Consensus 230 ig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a-~~~~ 308 (327)
T d1utca2 230 VGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTA-PHEA 308 (327)
T ss_dssp CSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-EETT
T ss_pred cCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEec-cCCC
Confidence 86521 1 11 1111 1123456788888888899999999999999999999988777777777555 4444
Q ss_pred CCeEEEEcCCCeEEE
Q 014104 330 TSTLVVGGIDGVLRV 344 (430)
Q Consensus 330 ~~~l~s~~~dg~i~v 344 (430)
..=+++...+|.|.-
T Consensus 309 ~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 309 TAGIIGVNRKGQVLS 323 (327)
T ss_dssp TTEEEEEETTSEEEE
T ss_pred CceEEEECCCCeEEE
Confidence 444555556776643
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.52 E-value=0.016 Score=47.34 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=104.7
Q ss_pred CEEEEEeCCeEEEEEcCCCcccccC----CCCceeeeeEEEE--cCCceEE-EecCCeEEEEECCCCeeeEEeecCCCCe
Q 014104 164 SKIVGLIGTRICIWRRNGLRSVFPS----REGTFMKGLCMRY--FDPEAVV-GCEDGTARVFDMYSRKCSQIIRMHCAPV 236 (430)
Q Consensus 164 ~~l~~~~~~~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~--~~~~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~i 236 (430)
.+|+-+..+.|+-.++++....... .......+.++.+ ..+.++- -..++.|+..++........+......+
T Consensus 2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 3455555667777777654321100 0011111233333 3444444 4556788888886555444444334567
Q ss_pred EEEEecC-CC-EEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceee
Q 014104 237 TSLSLSE-DQ-LIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLW 311 (430)
Q Consensus 237 ~~~~~~~-~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 311 (430)
..+++.. ++ +..+-...+.|.+.++..... ..+.......+..++++|...+++.... ...|..-++.......
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~ 160 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred cEEEEeccCCeEEEeccCCCEEEEEecCCceE-EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence 8888873 44 444556678999999875543 3333223457899999998877774432 2235445555332222
Q ss_pred eeecCCCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCC
Q 014104 312 ETRISPNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNT 349 (430)
Q Consensus 312 ~~~~~~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~ 349 (430)
.....-....+++ +.+.++.|+.+ ...+.|...|+..
T Consensus 161 i~~~~~~~P~gla-iD~~~~~lYw~d~~~~~I~~~~~~g 198 (263)
T d1npea_ 161 LAQDNLGLPNGLT-FDAFSSQLCWVDAGTHRAECLNPAQ 198 (263)
T ss_dssp EECTTCSCEEEEE-EETTTTEEEEEETTTTEEEEEETTE
T ss_pred eeeecccccceEE-EeecCcEEEEEeCCCCEEEEEECCC
Confidence 2222234567888 88777767544 5678888888863
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.054 Score=49.87 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=93.7
Q ss_pred CeEEEEECCCCeeeEEeecCCC----------C-eEEEEecCC---CEEEEEeCCCeEEEEeCCCCceeEEEecCCC---
Q 014104 213 GTARVFDMYSRKCSQIIRMHCA----------P-VTSLSLSED---QLIISGSSLGSIAISGLSSDQRVATLRSTDC--- 275 (430)
Q Consensus 213 g~i~vwd~~~~~~~~~~~~~~~----------~-i~~~~~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~--- 275 (430)
..+...|+.+++....++.... + +..+...++ ..++.++.++.+.+.|..+++.+........
T Consensus 291 ~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~ 370 (582)
T d1flga_ 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITW 370 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCS
T ss_pred ceeEEecccchhhhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCcccc
Confidence 3577789999988877653221 1 122333333 3567778999999999999987654321000
Q ss_pred -----------------------------------------CCeEEEEEecCCCEEEEEeC-------------------
Q 014104 276 -----------------------------------------TGIKTLCYNPCSRLVFAGTT------------------- 295 (430)
Q Consensus 276 -----------------------------------------~~v~~~~~~~~~~~l~~~~~------------------- 295 (430)
..-..++++|+...++....
T Consensus 371 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~ 450 (582)
T d1flga_ 371 ASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAY 450 (582)
T ss_dssp EEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred ccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccc
Confidence 00112344555444433221
Q ss_pred --------------CCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEeccC
Q 014104 296 --------------AGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVMDIG 361 (430)
Q Consensus 296 --------------dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 361 (430)
.|.|.-+|+.+++.+.+...+. ++.+-. .+..+.++++|+.||.++-+|.++|+.+.++.....
T Consensus 451 ~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~-p~~~g~-lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~ 528 (582)
T d1flga_ 451 LGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGV-LATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp CCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred cccCccccccccCCCCeEEEEcCCCCcEEeecCCCC-CCccce-eEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCC
Confidence 2568889999999888876543 222212 345677888999999999999999999999886443
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.33 E-value=0.028 Score=45.88 Aligned_cols=229 Identities=8% Similarity=0.072 Sum_probs=136.4
Q ss_pred CeEEEEecCCCeeEEeeecCCceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec
Q 014104 132 KVMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE 211 (430)
Q Consensus 132 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 211 (430)
..|.|-|+.+......-. -.....-++|..+.|+-.....+.++|+++.+.+....-.. .++-|.+.++..+.-=.
T Consensus 45 ~~VvIidl~n~~~~~Rrp--i~AdsAIMhP~~~IiALrag~~LQiFnletK~klks~~~~e--~VvfWkWis~~~L~lVT 120 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRP--ISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD--DVTFWKWISLNTVALVT 120 (327)
T ss_dssp EEEEEEETTSTTSCEEEE--CCCSEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSS--CCCEEEESSSSEEEEEC
T ss_pred ceEEEEECCCCCcceecc--cchhhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCC--CcEEEEecCCCEEEEEc
Confidence 478888987654332222 23344556788888885558899999999987543222222 24667777777333333
Q ss_pred CCeEEEEECCCC-eeeEEeecCC----CCeEEEEecCC-CEEEEEe-------CCCeEEEEeCCCCceeEEEecCCCCCe
Q 014104 212 DGTARVFDMYSR-KCSQIIRMHC----APVTSLSLSED-QLIISGS-------SLGSIAISGLSSDQRVATLRSTDCTGI 278 (430)
Q Consensus 212 dg~i~vwd~~~~-~~~~~~~~~~----~~i~~~~~~~~-~~l~~~~-------~dg~i~vwd~~~~~~~~~~~~~~~~~v 278 (430)
+..|+-|+++.. ++.+.+..|. ..|..-..+++ ++++..+ -.|.+.+|..+.+ .-+.+++ |....
T Consensus 121 ~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieG-haa~F 198 (327)
T d1utca2 121 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEG-HAASF 198 (327)
T ss_dssp SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECC-SEEEE
T ss_pred CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccc-eeeee
Confidence 458999999543 4666666553 34555566655 5444332 2367889997743 4455655 43322
Q ss_pred EEEEEecC--C-CEEEE---EeCCCeEEEEeCCCCc---ee-----eeee----cCCCceEEEEEeeCCCCeEEEEcCCC
Q 014104 279 KTLCYNPC--S-RLVFA---GTTAGYASCWDLRTMK---SL-----WETR----ISPNVVYSLQHLQNDTSTLVVGGIDG 340 (430)
Q Consensus 279 ~~~~~~~~--~-~~l~~---~~~dg~i~i~d~~~~~---~~-----~~~~----~~~~~v~~l~~~s~~~~~l~s~~~dg 340 (430)
..+.+.-+ . +.++. +...+++.+.++.... .- ..+. ...+-..++. .++.-..+..-+.-|
T Consensus 199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamq-vs~kygiiyviTK~G 277 (327)
T d1utca2 199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ-ISEKHDVVFLITKYG 277 (327)
T ss_dssp EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEE-EETTTTEEEEEETTS
T ss_pred EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEE-eeccCCEEEEEecCc
Confidence 22222111 1 12222 1233678888876421 11 0111 1123345666 778788888889999
Q ss_pred eEEEEEcCCCceEEEEEeccCcceeee
Q 014104 341 VLRVLDQNTGEVLSRCVMDIGSASSSS 367 (430)
Q Consensus 341 ~i~vwd~~~~~~~~~~~~~~~~~~~~~ 367 (430)
.|++||++++.++..-+-..+.+++.+
T Consensus 278 ~i~lyDleTgt~i~~nRIs~~~iF~~a 304 (327)
T d1utca2 278 YIHLYDLETGTCIYMNRISGETIFVTA 304 (327)
T ss_dssp EEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EEEEEEcccccEEEEeecCCCceEEec
Confidence 999999999999998887666544333
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.065 Score=43.66 Aligned_cols=184 Identities=9% Similarity=0.014 Sum_probs=99.2
Q ss_pred EEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEE-ecCCeEEEEECCCCe----eeEEeecCCCCeEEEE
Q 014104 166 IVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVG-CEDGTARVFDMYSRK----CSQIIRMHCAPVTSLS 240 (430)
Q Consensus 166 l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~----~~~~~~~~~~~i~~~~ 240 (430)
|+-+....|+..++++...............+.+.+..+.++-+ ...+.|.-.++.... ....+......+..++
T Consensus 4 Ll~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glA 83 (266)
T d1ijqa1 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 83 (266)
T ss_dssp EEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEE
T ss_pred EEEECCCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEE
Confidence 44444556777777665432111111111122222233334333 345556655553211 1112222223455677
Q ss_pred ec--CCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEe--CCCeEEEEeCCCCceeeeeecC
Q 014104 241 LS--EDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGT--TAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 241 ~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
+. .+++..+-...+.|.+.++........+.. .......++++|...+|+... ..+.|...++............
T Consensus 84 vD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~-~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~ 162 (266)
T d1ijqa1 84 VDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 162 (266)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred EeeccceEEEEecCCCEEEeEecCCceEEEEEcC-CCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccc
Confidence 76 345555556778999999876554444443 455789999999766666443 3456777777643332222223
Q ss_pred CCceEEEEEeeCCCCeEEEE-cCCCeEEEEEcCCCc
Q 014104 317 PNVVYSLQHLQNDTSTLVVG-GIDGVLRVLDQNTGE 351 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l~s~-~~dg~i~vwd~~~~~ 351 (430)
-....+++ +.+.++.|+-+ ...+.|...|+....
T Consensus 163 ~~~p~gl~-iD~~~~~lYw~d~~~~~I~~~~~dG~~ 197 (266)
T d1ijqa1 163 IQWPNGIT-LDLLSGRLYWVDSKLHSISSIDVNGGN 197 (266)
T ss_dssp CSCEEEEE-EETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred cceeeEEE-eeccccEEEEecCCcCEEEEEECCCCC
Confidence 35567888 88877766555 566888888886433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.91 E-value=0.1 Score=44.80 Aligned_cols=134 Identities=7% Similarity=-0.029 Sum_probs=71.8
Q ss_pred eEEEEecCCCeeEE--eeecC--CceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCccccc--CCCCceeeeeEEEEcCC
Q 014104 133 VMRLWSLEGYKCVE--EYSLP--NAASLVDFDFDESKIV-GL-IGTRICIWRRNGLRSVFP--SREGTFMKGLCMRYFDP 204 (430)
Q Consensus 133 ~i~iwd~~~~~~~~--~~~~~--~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~ 204 (430)
.+.+||..+++... ....+ ......++.+++..++ ++ ....+.+||..+..-... ..........+...++.
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~ 132 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence 37799998875432 22222 2233467888999888 33 346899999987653211 11111111233333455
Q ss_pred ceEEEecC------CeEEEEECCCCeeeEEe--e-------cCC------CCeEEEEecCCCEEEEEeCCCeEEEEeCCC
Q 014104 205 EAVVGCED------GTARVFDMYSRKCSQII--R-------MHC------APVTSLSLSEDQLIISGSSLGSIAISGLSS 263 (430)
Q Consensus 205 ~l~~~~~d------g~i~vwd~~~~~~~~~~--~-------~~~------~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~ 263 (430)
.++.|+.+ ..+.+||..+.+-...- . .+. .....+....+..++.+..++.+.++|..+
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~ 212 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS 212 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence 56666542 46899998876432110 0 000 111112222345666677777788888776
Q ss_pred Cce
Q 014104 264 DQR 266 (430)
Q Consensus 264 ~~~ 266 (430)
...
T Consensus 213 ~~~ 215 (387)
T d1k3ia3 213 GDV 215 (387)
T ss_dssp CEE
T ss_pred CcE
Confidence 654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.081 Score=43.05 Aligned_cols=223 Identities=13% Similarity=0.063 Sum_probs=134.7
Q ss_pred eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EE-eCCeEEEEEcCCCc-----ccccCCCCceeeeeEEEEcCCc
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GL-IGTRICIWRRNGLR-----SVFPSREGTFMKGLCMRYFDPE 205 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 205 (430)
.|+-.++++.+....+.....+..+.|++..+.+. +. ..+.|...++++.. .............+++.+.+..
T Consensus 11 ~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~ 90 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN 90 (266)
T ss_dssp SEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE
T ss_pred eEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce
Confidence 57878888765554455555666788888888887 43 45667766665422 1111222222234555555666
Q ss_pred eEEE-ecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCC-CEEEEE--eCCCeEEEEeCCCCceeEEEecCCCCCeEEE
Q 014104 206 AVVG-CEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSED-QLIISG--SSLGSIAISGLSSDQRVATLRSTDCTGIKTL 281 (430)
Q Consensus 206 l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~-~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 281 (430)
|..+ ...+.|.+.++........+.........++++|. .++.-. +..+.|...++... ....+....-.....+
T Consensus 91 lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~~~~~p~gl 169 (266)
T d1ijqa1 91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGI 169 (266)
T ss_dssp EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEE
T ss_pred EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-ceecccccccceeeEE
Confidence 5544 55678999998766554555555567889999864 444433 34456777777543 3344432234567899
Q ss_pred EEecCCCEEEEE-eCCCeEEEEeCCCCceeeeeec--CCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 282 CYNPCSRLVFAG-TTAGYASCWDLRTMKSLWETRI--SPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 282 ~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~--~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
++++.++.|+.+ ...+.|...|+........... ......+++ +. ++....+-..++.|...+..++.....+..
T Consensus 170 ~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~la-v~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 170 TLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA-VF-EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEE-EE-TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred EeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEE-EE-CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 999887766654 5568899999875433222222 223456777 43 344445555778898888888877766654
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.67 E-value=0.12 Score=41.99 Aligned_cols=201 Identities=7% Similarity=-0.025 Sum_probs=121.2
Q ss_pred eeEEEEecCCCEEE-E-EeCCeEEEEEcCCCccc-ccCCCCceeeeeEEEEcCCceE-EEecCCeEEEEECCCCeeeEEe
Q 014104 154 ASLVDFDFDESKIV-G-LIGTRICIWRRNGLRSV-FPSREGTFMKGLCMRYFDPEAV-VGCEDGTARVFDMYSRKCSQII 229 (430)
Q Consensus 154 ~~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~ 229 (430)
+..++|.+..+.+. + ..++.|...++++.... +....-.....+++...+..|+ +-...+.|.+.++........+
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~ 117 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF 117 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEe
Confidence 44577888888777 4 34577888888766532 2211212233455555566655 4445678999998655443333
Q ss_pred ecCCCCeEEEEecCC-CEEEEEe-C--CCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEE-eCCCeEEEEeC
Q 014104 230 RMHCAPVTSLSLSED-QLIISGS-S--LGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAG-TTAGYASCWDL 304 (430)
Q Consensus 230 ~~~~~~i~~~~~~~~-~~l~~~~-~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~i~d~ 304 (430)
......+..++++|. .+++-.. . ...|..-++.... ...+....-.....+++++.++.|+.. ...+.|...|+
T Consensus 118 ~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~-~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~ 196 (263)
T d1npea_ 118 DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (263)
T ss_dssp CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC-ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEEC
Confidence 333467889999875 4444332 2 2235555655333 233332233467899999888877654 46778999999
Q ss_pred CCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCCceEEEEEe
Q 014104 305 RTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTGEVLSRCVM 358 (430)
Q Consensus 305 ~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 358 (430)
........+.+- ....+++ +. ++....+-...+.|...|..+++.+..+..
T Consensus 197 ~g~~~~~v~~~~-~~P~~la-v~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~ 247 (263)
T d1npea_ 197 AQPGRRKVLEGL-QYPFAVT-SY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (263)
T ss_dssp TEEEEEEEEECC-CSEEEEE-EE-TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCCCeEEEECCC-CCcEEEE-EE-CCEEEEEECCCCEEEEEECCCCccceEECC
Confidence 755443333332 3345777 43 344445555778999999998887776643
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.49 E-value=0.21 Score=42.90 Aligned_cols=132 Identities=13% Similarity=0.133 Sum_probs=90.4
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecC---------------------------------------CCCe--EEEEecC-
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMH---------------------------------------CAPV--TSLSLSE- 243 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~---------------------------------------~~~i--~~~~~~~- 243 (430)
+.+|+..|.|+|+-+.+++.+..+... .+.. ..+.+.+
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG 95 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 95 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence 778999999999999888877665210 0111 1344443
Q ss_pred ---CCE-EEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEec--CCCEEEEEeCCC------------------eE
Q 014104 244 ---DQL-IISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNP--CSRLVFAGTTAG------------------YA 299 (430)
Q Consensus 244 ---~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg------------------~i 299 (430)
+++ ++.-..+..|.+.|+.+.+..+.+.......+..+...+ +-.+++.++.+. .+
T Consensus 96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~ 175 (459)
T d1fwxa2 96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 175 (459)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence 244 444457889999999999987766554556778777754 445777776633 36
Q ss_pred EEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCC
Q 014104 300 SCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGID 339 (430)
Q Consensus 300 ~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~d 339 (430)
.+.|..+++...++... +....+. ++++|+++++.+.+
T Consensus 176 t~ID~~tm~V~~QV~V~-g~ld~~~-~s~dGK~af~TsyN 213 (459)
T d1fwxa2 176 TAVDADKWEVAWQVLVS-GNLDNCD-ADYEGKWAFSTSYN 213 (459)
T ss_dssp EEEETTTTEEEEEEEES-SCCCCEE-ECSSSSEEEEEESC
T ss_pred EEEecCCceEEEEeeeC-CChhccc-cCCCCCEEEEEecc
Confidence 77899988887776543 3445666 99999999887743
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.72 E-value=0.47 Score=39.86 Aligned_cols=194 Identities=9% Similarity=0.073 Sum_probs=110.2
Q ss_pred CCCEEE-EEeCCeEEEEEcCCCcccccCCCCceeee---eEEEEcCCc--eEEEec--C--CeEEEEECCC-CeeeEEee
Q 014104 162 DESKIV-GLIGTRICIWRRNGLRSVFPSREGTFMKG---LCMRYFDPE--AVVGCE--D--GTARVFDMYS-RKCSQIIR 230 (430)
Q Consensus 162 ~~~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~--l~~~~~--d--g~i~vwd~~~-~~~~~~~~ 230 (430)
+...++ +...+.+.+||+++.+.. ....+....+ ..+...+.. +++++. + .+|.+|.+.. ...+..+.
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~G~~l~-~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~ 117 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLEGKMLH-SYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSIT 117 (353)
T ss_dssp GGCEEEEEETTSCCEEEETTCCEEE-ECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECS
T ss_pred CccEEEEEcCcCCEEEEcCCCcEEE-ecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccc
Confidence 445566 444566889998755432 2223332221 111222222 555552 2 3677776642 22333332
Q ss_pred cC-------CCCeEEEEe--cCC--C-EEEEEeCCCeEEEEeCC---CC----ceeEEEecCCCCCeEEEEEecCCCEEE
Q 014104 231 MH-------CAPVTSLSL--SED--Q-LIISGSSLGSIAISGLS---SD----QRVATLRSTDCTGIKTLCYNPCSRLVF 291 (430)
Q Consensus 231 ~~-------~~~i~~~~~--~~~--~-~l~~~~~dg~i~vwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~ 291 (430)
.. ...+..+++ ++. . +++....+|.+..|.+. .+ +.++.+. ....+..|.+++....|+
T Consensus 118 ~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~EGCVvDde~~~Ly 195 (353)
T d1h6la_ 118 DPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTEGMAADDEYGSLY 195 (353)
T ss_dssp CSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEEEEEEETTTTEEE
T ss_pred ccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccceEEEeCCCCcEE
Confidence 11 123556666 442 3 56667788999888763 23 3456666 456899999999989999
Q ss_pred EEeCCCeEEEEeCCC-----Cceeeeeec--CCCceEEEEEe-eCC--CCeEEEEcCCCeEEEEEcCC-CceEEEEEe
Q 014104 292 AGTTAGYASCWDLRT-----MKSLWETRI--SPNVVYSLQHL-QND--TSTLVVGGIDGVLRVLDQNT-GEVLSRCVM 358 (430)
Q Consensus 292 ~~~~dg~i~i~d~~~-----~~~~~~~~~--~~~~v~~l~~~-s~~--~~~l~s~~~dg~i~vwd~~~-~~~~~~~~~ 358 (430)
.+-++.-|..++... ...+....+ ..+.+-.++.+ .++ |-+|+|.-.+++..+||..+ .+.+..|..
T Consensus 196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~i 273 (353)
T d1h6la_ 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQI 273 (353)
T ss_dssp EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEEE
T ss_pred EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEEE
Confidence 998887777776642 222222222 23566777633 223 33455555789999999986 467777764
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.27 E-value=0.43 Score=36.45 Aligned_cols=192 Identities=13% Similarity=0.048 Sum_probs=101.8
Q ss_pred cCCceeEEEEecCCCEEE--EEeCCeEEEEEcCCCccc--ccCCCCceeeeeEEEEcCCceE----EEecCCeEEEEECC
Q 014104 150 LPNAASLVDFDFDESKIV--GLIGTRICIWRRNGLRSV--FPSREGTFMKGLCMRYFDPEAV----VGCEDGTARVFDMY 221 (430)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~----~~~~dg~i~vwd~~ 221 (430)
.+..+.+++...+++.++ +++.....+|-++++... ...+.-..+ ..+ .++.++ .++......+-|+.
T Consensus 100 spk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFV--tDI--~~d~I~G~g~~~g~~~sfF~adl~ 175 (313)
T d2hu7a1 100 AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFV--SDI--RGDLIAGLGFFGGGRVSLFTSNLS 175 (313)
T ss_dssp TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEE--EEE--ETTEEEEEEEEETTEEEEEEEETT
T ss_pred CCceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceE--Eec--cCCeEEEEeeecCCcceEEEEecc
Confidence 344567788888887776 888889999999988632 111111111 110 111110 11111223333443
Q ss_pred CCeeeEEeecCCCCeEEEEecCCCEEEEEeC---CCeEEEEeCCCCceeEE-Eec-----CCCCCeEEEEEecCCCEEEE
Q 014104 222 SRKCSQIIRMHCAPVTSLSLSEDQLIISGSS---LGSIAISGLSSDQRVAT-LRS-----TDCTGIKTLCYNPCSRLVFA 292 (430)
Q Consensus 222 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~-~~~-----~~~~~v~~~~~~~~~~~l~~ 292 (430)
+|. ++.+....+.++...+.+++.++++-. +....-+|+++++.-+. +.. -....|+-+-+.|++++++.
T Consensus 176 SG~-lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~ii 254 (313)
T d2hu7a1 176 SGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVV 254 (313)
T ss_dssp TEE-EEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEE
T ss_pred cCC-EEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEE
Confidence 332 234444455666666677765655432 12233558887665322 111 11235666779999999999
Q ss_pred EeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeE-EEEcCCCeEEEEEcCCCceE
Q 014104 293 GTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTL-VVGGIDGVLRVLDQNTGEVL 353 (430)
Q Consensus 293 ~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l-~s~~~dg~i~vwd~~~~~~~ 353 (430)
+-.||.=++|+ +|+.+..-++ .+.....+ +++.. ...|-..--++-.+.+|+++
T Consensus 255 akrdG~s~lF~--nGk~in~p~G---~~~gat~i--~~~iyfshsSL~tP~kI~~~~~~~~~ 309 (313)
T d2hu7a1 255 ARREGRSAVFI--DGERVEAPQG---NHGRVVLW--RGKLVTSHTSLSTPPRIVSLPSGEPL 309 (313)
T ss_dssp EEETTEEEEEE--TTEEECCCSS---EEEEEEEE--TTEEEEEEEETTEEEEEEEETTCCEE
T ss_pred EecCCchheee--cceEecCCCC---cccceEEE--CCEEEEeecccCCCceeEEcCCCCcc
Confidence 99999999986 4666554433 33333312 23322 22333334556666666654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.26 E-value=0.29 Score=41.81 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=60.3
Q ss_pred eEEEEeCCCCceeE--EEecCCCCCeEEEEEecCCCEEEEEeCC-CeEEEEeCCCCceeee--eecCCCceEEEEEeeCC
Q 014104 255 SIAISGLSSDQRVA--TLRSTDCTGIKTLCYNPCSRLVFAGTTA-GYASCWDLRTMKSLWE--TRISPNVVYSLQHLQND 329 (430)
Q Consensus 255 ~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~i~d~~~~~~~~~--~~~~~~~v~~l~~~s~~ 329 (430)
.+.+||..+++-.. .....+.......++.++|++++.|+.+ ..+.+||..+..-... +..... -...+ ..+|
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~-~~~~~-~~~d 130 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARG-YQSSA-TMSD 130 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCS-SCEEE-ECTT
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccccccccccccc-cccee-eecC
Confidence 36789998876432 2332233334466788999999988765 5799999987644321 111111 12333 5678
Q ss_pred CCeEEEEcCC------CeEEEEEcCCCc
Q 014104 330 TSTLVVGGID------GVLRVLDQNTGE 351 (430)
Q Consensus 330 ~~~l~s~~~d------g~i~vwd~~~~~ 351 (430)
|++++.|+.+ ..+.+||..+.+
T Consensus 131 G~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 131 GRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred CceeeeccccccccccceeeeecCCCCc
Confidence 9988888743 368899988664
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.60 E-value=1.1 Score=37.64 Aligned_cols=138 Identities=8% Similarity=0.150 Sum_probs=83.3
Q ss_pred eEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecC-----C--CEEEEEe-C-C--CeEEEEeCCC-CceeEEEecC
Q 014104 206 AVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSE-----D--QLIISGS-S-L--GSIAISGLSS-DQRVATLRST 273 (430)
Q Consensus 206 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~-----~--~~l~~~~-~-d--g~i~vwd~~~-~~~~~~~~~~ 273 (430)
++....++-+++||+ .|+.+..+. .+.++.+..-. + ..++.++ . + .+|.+|.+.. ...+..+...
T Consensus 43 I~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~ 119 (353)
T d1h6la_ 43 LITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP 119 (353)
T ss_dssp EEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred EEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence 555556667999999 588877764 45666665431 2 2244444 2 2 3677887752 3333333321
Q ss_pred ------CCCCeEEEEE--ecC-CC-EEEEEeCCCeEEEEeCCC---C----ceeeeeecCCCceEEEEEeeCCCCeEEEE
Q 014104 274 ------DCTGIKTLCY--NPC-SR-LVFAGTTAGYASCWDLRT---M----KSLWETRISPNVVYSLQHLQNDTSTLVVG 336 (430)
Q Consensus 274 ------~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~i~d~~~---~----~~~~~~~~~~~~v~~l~~~s~~~~~l~s~ 336 (430)
....++.+|+ +|. |. ++++...+|.+..|.+.. + +.++++... ..+-+++ +......|+.+
T Consensus 120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-~q~EGCV-vDde~~~Lyis 197 (353)
T d1h6la_ 120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-SQTEGMA-ADDEYGSLYIA 197 (353)
T ss_dssp SSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-SCEEEEE-EETTTTEEEEE
T ss_pred ccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-CccceEE-EeCCCCcEEEe
Confidence 1124667777 554 44 566778899998887632 2 334444433 4567777 88888889888
Q ss_pred cCCCeEEEEEcC
Q 014104 337 GIDGVLRVLDQN 348 (430)
Q Consensus 337 ~~dg~i~vwd~~ 348 (430)
-++.-|..++..
T Consensus 198 EE~~Giw~~~a~ 209 (353)
T d1h6la_ 198 EEDEAIWKFSAE 209 (353)
T ss_dssp ETTTEEEEEESS
T ss_pred cCccceEEEEec
Confidence 877666555543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=1 Score=36.19 Aligned_cols=27 Identities=4% Similarity=-0.138 Sum_probs=18.2
Q ss_pred eEEEEcCeEEEEeeCCCe-----EEEEEecCC
Q 014104 400 TCLAVGMKKVVTTHNSKY-----IRLWKFNYS 426 (430)
Q Consensus 400 ~~v~~~~~~l~t~~~Dg~-----v~vw~~~~~ 426 (430)
.++.++++.++.||.++. |.+||+.++
T Consensus 237 ~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 237 GITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp EEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred EEEEECCEEEEEecCCCCeecceEEEEECCCC
Confidence 344558888888876543 667777654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.94 E-value=1.7 Score=37.54 Aligned_cols=231 Identities=10% Similarity=0.003 Sum_probs=117.9
Q ss_pred cCC-eE-EEEeCCC----eEEEEecCCCeeEEeeecCCceeEEEEecCCCEEE-EEeC----------------CeEEEE
Q 014104 121 KRG-LI-LTGVGDK----VMRLWSLEGYKCVEEYSLPNAASLVDFDFDESKIV-GLIG----------------TRICIW 177 (430)
Q Consensus 121 ~~~-~l-~s~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~----------------~~i~vw 177 (430)
+++ ++ ++-+.+| .+++.|+.+++.+...-.......++|.+|++.|+ ...+ ..+..+
T Consensus 134 pd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h 213 (430)
T d1qfma1 134 EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (430)
T ss_dssp TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred CCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEE
Confidence 555 43 3444444 79999999998775322222235688999999887 4332 257778
Q ss_pred EcCCCcc----cccCCCCc-eeeeeEEEEcCCceEE-Ee--cCCe--EEEEECCCCe--------eeEEeecCCCCeEEE
Q 014104 178 RRNGLRS----VFPSREGT-FMKGLCMRYFDPEAVV-GC--EDGT--ARVFDMYSRK--------CSQIIRMHCAPVTSL 239 (430)
Q Consensus 178 d~~~~~~----~~~~~~~~-~~~~~~~~~~~~~l~~-~~--~dg~--i~vwd~~~~~--------~~~~~~~~~~~i~~~ 239 (430)
.+.+... ++...... .........++..++. .. .++. +.+.|+.... ....+........-+
T Consensus 214 ~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (430)
T d1qfma1 214 VLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV 293 (430)
T ss_dssp ETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEE
T ss_pred ECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEE
Confidence 8776542 23322222 1112223334444332 22 2233 3444543221 112222222233333
Q ss_pred EecCCCEEEEEe---CCCeEEEEeCCCCce--eEEEecCCCCCeEEEEEecCCCEEEEEe-CCC--eEEEEeCCCCceee
Q 014104 240 SLSEDQLIISGS---SLGSIAISGLSSDQR--VATLRSTDCTGIKTLCYNPCSRLVFAGT-TAG--YASCWDLRTMKSLW 311 (430)
Q Consensus 240 ~~~~~~~l~~~~---~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~i~i~d~~~~~~~~ 311 (430)
....+.+++... .++.|...++..... ...+-.++...+..-.+...+.+|+... .++ .|++++..+++...
T Consensus 294 ~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~ 373 (430)
T d1qfma1 294 TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLK 373 (430)
T ss_dssp EEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred ecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEE
Confidence 322233333332 346677777765432 2333322444455445555566666543 454 58889998877655
Q ss_pred eeecCCCceEEEEEeeCCCCeEE-EE-c--CCCeEEEEEcCCCce
Q 014104 312 ETRISPNVVYSLQHLQNDTSTLV-VG-G--IDGVLRVLDQNTGEV 352 (430)
Q Consensus 312 ~~~~~~~~v~~l~~~s~~~~~l~-s~-~--~dg~i~vwd~~~~~~ 352 (430)
......+.+..+. ..++...+. +- | .-.++.-+|+.+++.
T Consensus 374 ~~~~~~~sv~~~~-~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 374 IFPLEVGSVVGYS-GQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EECCCSSEEEEEE-CCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred ecCCCCceEeecc-CCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 4444445666554 445554332 22 2 337889999988764
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=1.7 Score=36.72 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=83.9
Q ss_pred ceeEEEEecCCCEEEEEeCCeEEEEEcCCCcccccC--------CCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCe
Q 014104 153 AASLVDFDFDESKIVGLIGTRICIWRRNGLRSVFPS--------REGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRK 224 (430)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 224 (430)
....++++.....++++....+.|..++.-+..... ....+..+..+++.+..+++ ..++.+..++..+-.
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~d~l~v-~~~~~l~~~~~~~l~ 116 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHGDQVLV-STRNALYSLDLEELS 116 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEETTEEEE-EESSEEEEEESSSTT
T ss_pred ccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeCCEEEE-EeCCCEEEEEeeccc
Confidence 455688888888888666667888775432111000 00011123444444554444 455678888876644
Q ss_pred eeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEec----CCCCCeEEEEEecCCCEEEEEe
Q 014104 225 CSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRS----TDCTGIKTLCYNPCSRLVFAGT 294 (430)
Q Consensus 225 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~ 294 (430)
.......-..++..+.++|+. ++....++.+.++++..++......+ .-.+.+.+++|++.|..++++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~p~~-~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 117 EFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp CEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred cccccccccccccceecCCce-eEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 444444445678888887764 55566789999999988765332211 0234677788887777777764
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=1.6 Score=34.94 Aligned_cols=215 Identities=10% Similarity=0.021 Sum_probs=95.6
Q ss_pred eEEEEecCCCeeEEeeecCCce-eEEEEecCCCEEE-EEe---------CCeEEEEEcCCCcccccCC-CCceeeeeEEE
Q 014104 133 VMRLWSLEGYKCVEEYSLPNAA-SLVDFDFDESKIV-GLI---------GTRICIWRRNGLRSVFPSR-EGTFMKGLCMR 200 (430)
Q Consensus 133 ~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~-~~~---------~~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~ 200 (430)
.+.+||+++++-...-..+... ...+...++..++ ++. ...+.+||..+..-..... ........+..
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~ 99 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV 99 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceeccc
Confidence 6789999987654432222211 1122233444444 321 2457788887655221111 11111112222
Q ss_pred EcCCceEEEecCC-----eEEEEECCCCeeeEEeec--CCCCeEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeE
Q 014104 201 YFDPEAVVGCEDG-----TARVFDMYSRKCSQIIRM--HCAPVTSLSLSEDQLIISGSSL-----GSIAISGLSSDQRVA 268 (430)
Q Consensus 201 ~~~~~l~~~~~dg-----~i~vwd~~~~~~~~~~~~--~~~~i~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~ 268 (430)
..+..++.++.++ ....+|..+..-...-.. .... .++...++..++.|+.+ ..+..||..+.+...
T Consensus 100 ~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~ 178 (288)
T d1zgka1 100 IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIG-VGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM 178 (288)
T ss_dssp ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred cceeeEEecceecccccceeeeeccccCcccccccccccccc-ceeeeeeecceEecCcccccccceEEEeecccccccc
Confidence 2333344443332 234466655432211110 0111 12223345555555543 457888887655432
Q ss_pred EEecCCCCCeEEEEEecCCCEEEEEeCC-----CeEEEEeCCCCceeeeeecCCC-ceEEEEEeeCCCCeEEEEcCCC--
Q 014104 269 TLRSTDCTGIKTLCYNPCSRLVFAGTTA-----GYASCWDLRTMKSLWETRISPN-VVYSLQHLQNDTSTLVVGGIDG-- 340 (430)
Q Consensus 269 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~-~v~~l~~~s~~~~~l~s~~~dg-- 340 (430)
.-.......-.+.... .+..++.|+.+ .....+|..+.+....-..... .-.+++ ..+++.++.|+.++
T Consensus 179 ~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~--~~~~~l~v~GG~~~~~ 255 (288)
T d1zgka1 179 ITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT--VHQGRIYVLGGYDGHT 255 (288)
T ss_dssp CCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEECCBCSSC
T ss_pred ccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEE--EECCEEEEEecCCCCe
Confidence 2111111112223332 45566665544 3467778776543321111111 111222 23677777776543
Q ss_pred ---eEEEEEcCCCc
Q 014104 341 ---VLRVLDQNTGE 351 (430)
Q Consensus 341 ---~i~vwd~~~~~ 351 (430)
.|.+||+.+.+
T Consensus 256 ~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 256 FLDSVECYDPDTDT 269 (288)
T ss_dssp BCCEEEEEETTTTE
T ss_pred ecceEEEEECCCCE
Confidence 37888888654
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=90.97 E-value=3.1 Score=33.19 Aligned_cols=207 Identities=11% Similarity=0.032 Sum_probs=94.0
Q ss_pred eEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCeEEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCC
Q 014104 197 LCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPVTSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCT 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 276 (430)
..+..-....++-. ||.|..|-....-.+..-......|..+..-....++. .|+.+..|.....-....... ...
T Consensus 29 ~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al--~dg~v~~wG~~~~gq~~~~~~-~~~ 104 (273)
T d1jtdb_ 29 DAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAE-ARS 104 (273)
T ss_dssp EEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGG-GGS
T ss_pred EEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee--eeeeeeccCCCcceeeccccc-ccc
Confidence 44444333333334 89999997654322221122233455555433333332 489999997543211111111 122
Q ss_pred CeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEEEcCCCeEEEEEcCCC------
Q 014104 277 GIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQNTG------ 350 (430)
Q Consensus 277 ~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~~~~------ 350 (430)
.+..++... ...+. -.|+.+..|.-...............|..+. - +.+-.....++.++.|.....
T Consensus 105 ~~~~i~~~~--~~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~-~---~~~~~~~~~~g~~~~~G~~~~g~~~~~ 177 (273)
T d1jtdb_ 105 GVDAIAAGA--WASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALD-G---GVYTALAVKNGGVIAWGDNYFGQTTVP 177 (273)
T ss_dssp SCCEEEEET--TEEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEE-E---CSSEEEEEETTEEEEEECCTTSTTSCC
T ss_pred ceeEEeeec--ccccc-cccccceecccCCCCceeeeccCCceEEEEe-c---cceeeeeecccceeEeecccCCccccc
Confidence 344454432 22222 3588899887543222111111123344443 2 222233335788888865421
Q ss_pred ----ceEEEEEeccCcceeeeccCCceEEEeecccccCCcccccCCCCCCCCeeEEEEcC-eEEEEeeCCCeEEEEEe
Q 014104 351 ----EVLSRCVMDIGSASSSSNKVSGVIERNEGRRLSAGCCIDRIPKTIRPPITCLAVGM-KKVVTTHNSKYIRLWKF 423 (430)
Q Consensus 351 ----~~~~~~~~~~~~~~~~~~s~d~~v~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~-~~l~t~~~Dg~v~vw~~ 423 (430)
..+..+..... ..++-. ||.++.|-.....+-. .+......|..|+... ..++. .||.|..|--
T Consensus 178 ~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~----~~~~~~~~v~~I~~G~~~~~~l--~~g~v~~WG~ 246 (273)
T d1jtdb_ 178 AEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTT----VPTEALSGVSAIASGEWYSLAL--KNGKVIAWGS 246 (273)
T ss_dssp GGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTC----CCGGGGSSCCEEEECSSCEEEE--ETTEEEEEST
T ss_pred ccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccC----CCccCCCCcEEEEeCcceEEEE--ECCEEEEECC
Confidence 12333332222 112222 6777655322211100 0111124588888754 44544 4899999953
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.29 E-value=2.9 Score=31.80 Aligned_cols=214 Identities=12% Similarity=0.073 Sum_probs=113.5
Q ss_pred eEEEEeCCCeEEEEecCCCeeEEeeecCCceeEEEEecCC--CEEE-E------EeCCeEEEEEcCCCcccccCCCCcee
Q 014104 124 LILTGVGDKVMRLWSLEGYKCVEEYSLPNAASLVDFDFDE--SKIV-G------LIGTRICIWRRNGLRSVFPSREGTFM 194 (430)
Q Consensus 124 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~-~------~~~~~i~vwd~~~~~~~~~~~~~~~~ 194 (430)
+++++...|.+.++-+..++.++--+.+ ......|.. ..+. + .....+.+-++...-.-+.......+
T Consensus 28 ll~~~~seG~vni~~l~g~~~vkLtkeP---I~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~v 104 (313)
T d2hu7a1 28 LLVVGFSEGSVNAYLYDGGETVKLNREP---INSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPM 104 (313)
T ss_dssp EEEEEEETTEEEEEEESSSSCEECCSSC---CSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSB
T ss_pred EEEEEeccceEEEEEEeCCEEEEEeccc---ccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceE
Confidence 8888888999999988887766543322 111111111 1121 1 11234555566522222222233335
Q ss_pred eeeEEEEcCCc-eEEEecCCeEEEEECCCCeeeE--EeecC-------CCCeEEEEec-CC-CEEEEEeC-CCeEEEEeC
Q 014104 195 KGLCMRYFDPE-AVVGCEDGTARVFDMYSRKCSQ--IIRMH-------CAPVTSLSLS-ED-QLIISGSS-LGSIAISGL 261 (430)
Q Consensus 195 ~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~--~~~~~-------~~~i~~~~~~-~~-~~l~~~~~-dg~i~vwd~ 261 (430)
.+++...++.. +.+|+......+|-++.|+.-+ .+.+. ..-|..+.+- ++ ..+.++.- .|.+++++.
T Consensus 105 RI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tp 184 (313)
T d2hu7a1 105 RILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS 184 (313)
T ss_dssp EEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred EEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecC
Confidence 67788888777 6677777788888887776432 22211 1223333333 22 22333332 556666655
Q ss_pred CCCceeEEEecCCCCCeEEEEEecCCCEEEEEeC---CCeEEEEeCCCCceee-eeec------CCCceEEEEEeeCCCC
Q 014104 262 SSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTT---AGYASCWDLRTMKSLW-ETRI------SPNVVYSLQHLQNDTS 331 (430)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~-~~~~------~~~~v~~l~~~s~~~~ 331 (430)
..| .++...+.+..+. +++.. .....-+|+++++... ++.. ..-.|+-+- +.|+++
T Consensus 185 keG------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~-Y~Pdd~ 250 (313)
T d2hu7a1 185 GEG------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLG-YLPDGR 250 (313)
T ss_dssp SSE------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEE-ECTTSC
T ss_pred CCC------------cccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeee-eCCCCc
Confidence 443 3444444443333 33321 1122245777654322 1111 124566666 899999
Q ss_pred eEEEEcCCCeEEEEEcCCCceEEEE
Q 014104 332 TLVVGGIDGVLRVLDQNTGEVLSRC 356 (430)
Q Consensus 332 ~l~s~~~dg~i~vwd~~~~~~~~~~ 356 (430)
+++.+-.||.=++|. +|+.+.+.
T Consensus 251 L~iiakrdG~s~lF~--nGk~in~p 273 (313)
T d2hu7a1 251 LAVVARREGRSAVFI--DGERVEAP 273 (313)
T ss_dssp EEEEEEETTEEEEEE--TTEEECCC
T ss_pred EEEEEecCCchheee--cceEecCC
Confidence 989999999999986 46665543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=86.99 E-value=7.2 Score=32.20 Aligned_cols=73 Identities=3% Similarity=0.069 Sum_probs=44.8
Q ss_pred CCCeEEEEEecCCCEEEEEe-----------------CCCeEEEEeCCCCceeeeeecCCCceEEEEEeeCCCCeEEE-E
Q 014104 275 CTGIKTLCYNPCSRLVFAGT-----------------TAGYASCWDLRTMKSLWETRISPNVVYSLQHLQNDTSTLVV-G 336 (430)
Q Consensus 275 ~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~v~~l~~~s~~~~~l~s-~ 336 (430)
......+++..+|.+++|-. .-+.+.-||....+ .....-..-+.++ ++||+++|+. -
T Consensus 149 ~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~---~~~~~l~~pNGI~-~s~d~~~lyVa~ 224 (340)
T d1v04a_ 149 LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR---VVAEGFDFANGIN-ISPDGKYVYIAE 224 (340)
T ss_dssp CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE---EEEEEESSEEEEE-ECTTSSEEEEEE
T ss_pred ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE---EEcCCCCccceeE-ECCCCCEEEEEe
Confidence 34677788887887777631 12234444433222 2222234578888 9999987654 4
Q ss_pred cCCCeEEEEEcCCCc
Q 014104 337 GIDGVLRVLDQNTGE 351 (430)
Q Consensus 337 ~~dg~i~vwd~~~~~ 351 (430)
+..+.|++|++....
T Consensus 225 t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 225 LLAHKIHVYEKHANW 239 (340)
T ss_dssp GGGTEEEEEEECTTS
T ss_pred CCCCeEEEEEeCCCc
Confidence 577899999987543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.67 E-value=9.7 Score=32.47 Aligned_cols=198 Identities=12% Similarity=-0.003 Sum_probs=96.6
Q ss_pred EEEecCCCEEE-E-EeCC----eEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEec----------------CCe
Q 014104 157 VDFDFDESKIV-G-LIGT----RICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCE----------------DGT 214 (430)
Q Consensus 157 ~~~~~~~~~l~-~-~~~~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------dg~ 214 (430)
.+++|++++++ + +.+| .++++|+++++.+-..........++|..++..++-... ...
T Consensus 130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~ 209 (430)
T d1qfma1 130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK 209 (430)
T ss_dssp EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred eEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCCcce
Confidence 57899999988 2 3333 489999999985432211111123555555555543322 235
Q ss_pred EEEEECCCCee--eEEeecCC--CCeEEEEecCC-CEEEEEe---CCCe--EEEEeCCCCce-------eEEEecCCCCC
Q 014104 215 ARVFDMYSRKC--SQIIRMHC--APVTSLSLSED-QLIISGS---SLGS--IAISGLSSDQR-------VATLRSTDCTG 277 (430)
Q Consensus 215 i~vwd~~~~~~--~~~~~~~~--~~i~~~~~~~~-~~l~~~~---~dg~--i~vwd~~~~~~-------~~~~~~~~~~~ 277 (430)
|..+.+.+... ...+.... ..+..+..+++ ++++... .+.. +.+.|+..... ...+.......
T Consensus 210 v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 289 (430)
T d1qfma1 210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGE 289 (430)
T ss_dssp EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSC
T ss_pred EEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccc
Confidence 77777766532 23333322 24556666655 5544322 2333 44445432211 11122112223
Q ss_pred eEEEEEecCCCEEEEEe---CCCeEEEEeCCCCcee--eee-ecCCCceEEEEEeeCCCCeEEEE-cCC--CeEEEEEcC
Q 014104 278 IKTLCYNPCSRLVFAGT---TAGYASCWDLRTMKSL--WET-RISPNVVYSLQHLQNDTSTLVVG-GID--GVLRVLDQN 348 (430)
Q Consensus 278 v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~--~~~-~~~~~~v~~l~~~s~~~~~l~s~-~~d--g~i~vwd~~ 348 (430)
..- ..+.++.+++... .++.|...++...... ..+ ..+...+..-. +...+.+|+.. -.+ ..|++++..
T Consensus 290 ~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~-~~~~~~~lvl~~~~~~~~~l~v~~~~ 367 (430)
T d1qfma1 290 YDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV-ACVRSNFLVLCYLHDVKNTLQLHDLA 367 (430)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE-EEETTTEEEEEEEETTEEEEEEEETT
T ss_pred eEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE-EEEECCEEEEEEEcCCEeEEEEEECC
Confidence 332 2232333444333 3466777777654321 223 23333343322 33445555544 344 458899998
Q ss_pred CCceEEEE
Q 014104 349 TGEVLSRC 356 (430)
Q Consensus 349 ~~~~~~~~ 356 (430)
+++.....
T Consensus 368 ~~~~~~~~ 375 (430)
T d1qfma1 368 TGALLKIF 375 (430)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEec
Confidence 77765443
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=85.37 E-value=7.3 Score=30.78 Aligned_cols=179 Identities=11% Similarity=-0.005 Sum_probs=81.2
Q ss_pred EEEecCCCEEEEEeCCeEEEEEcCCCcccccCCCCceeeeeEEEEcCCceEEEecCCeEEEEECCCCeeeEEeecCCCCe
Q 014104 157 VDFDFDESKIVGLIGTRICIWRRNGLRSVFPSREGTFMKGLCMRYFDPEAVVGCEDGTARVFDMYSRKCSQIIRMHCAPV 236 (430)
Q Consensus 157 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~i 236 (430)
.+++--....++..||.|..|-.+..-++- ........+..+.......+ +-.||.+..|.....-...........+
T Consensus 29 ~~va~G~~h~~al~dG~v~~wG~N~~GQlG-~~~~~~~~v~~v~~G~~~~~-al~dg~v~~wG~~~~gq~~~~~~~~~~~ 106 (273)
T d1jtdb_ 29 DAIAGGYFHGLALKGGKVLGWGANLNGQLT-MPAATQSGVDAIAAGNYHSL-ALKDGEVIAWGGNEDGQTTVPAEARSGV 106 (273)
T ss_dssp EEEEECSSEEEEEETTEEEEEECCTTSTTS-CCGGGGSCCCEEEECSSEEE-EEETTEEEEEECCTTSTTCCCGGGGSSC
T ss_pred EEEEccCCEEEEEECCEEEEEeCCCCCcee-eeecccccceEEecCCCcee-eeeeeeeeccCCCcceeeccccccccce
Confidence 333333344444458999999766543221 01111112233333233222 2358999999754321111111112234
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEeCCCCceeEEEecCCCCCeEEEEEecCCCEEEEEeCCCeEEEEeCCCCceeeeeecC
Q 014104 237 TSLSLSEDQLIISGSSLGSIAISGLSSDQRVATLRSTDCTGIKTLCYNPCSRLVFAGTTAGYASCWDLRTMKSLWETRIS 316 (430)
Q Consensus 237 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 316 (430)
..++......++ -.|+.+..|.-....... ........|..++- ....++ ...++.++.|-.............
T Consensus 107 ~~i~~~~~~~~~--~~dg~v~~~g~~~~~~~~-~~~~~~~~v~~~~~--~~~~~~-~~~~g~~~~~G~~~~g~~~~~~~~ 180 (273)
T d1jtdb_ 107 DAIAAGAWASYA--LKDGKVIAWGDDSDGQTT-VPAEAQSGVTALDG--GVYTAL-AVKNGGVIAWGDNYFGQTTVPAEA 180 (273)
T ss_dssp CEEEEETTEEEE--EETTEEEEEECCTTSTTS-CCGGGGSSEEEEEE--CSSEEE-EEETTEEEEEECCTTSTTSCCGGG
T ss_pred eEEeeecccccc--cccccceecccCCCCcee-eeccCCceEEEEec--cceeee-eecccceeEeecccCCcccccccc
Confidence 444443333222 247889999744322111 11112234544433 222333 345788888866543222222223
Q ss_pred CCceEEEEEeeCCCCeEEEEcCCCeEEEEEc
Q 014104 317 PNVVYSLQHLQNDTSTLVVGGIDGVLRVLDQ 347 (430)
Q Consensus 317 ~~~v~~l~~~s~~~~~l~s~~~dg~i~vwd~ 347 (430)
...|..++ .. ....+.-. ||.|+-|=.
T Consensus 181 ~~~v~~Is-~G--~~h~~~l~-dG~v~~WG~ 207 (273)
T d1jtdb_ 181 QSGVDDVA-GG--IFHSLALK-DGKVIAWGD 207 (273)
T ss_dssp SSSEEEEE-EC--SSEEEEEE-TTEEEEEEC
T ss_pred cCCcccee-cc--ceeeEEEe-cCcEEEcCC
Confidence 35677766 32 23333233 799999954
|