Citrus Sinensis ID: 014112

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
Protein Sequence
MDSPQSVVSPFKSSVAAEPEKHKSDFFARSGSLTKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPDVMAIPAVPKPLAADETAQESEISESLDRIEFPDPKIVNENQMMVSEYFGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESVQHPKLDSPPSSVSTNGVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKEKKVDVGEGESDSSGGVLSDAINKPVVSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKLQASKNTGSRVFYGSRAFF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEEEEEEEEEEcccccccccccccccEEEEEEEccccccEEEEcccccccccccccEEEEEEccccccEEEEEEEEEEccccccccccEEEEEEccEEEEcccEEEEEEEEEEccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccEEcccccEEEcccccccccccccccccccccEEcccEEEEccccccEEEEEEEEEEccccccEEEEEccccEEEEEEEcccccccccEEEEcccccccccccccEEcEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccEEEEcEccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccHccEccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEcccccc
Coil and Loop (DISEMBL)
mdspqsvvspfkssvaaepekhksdffarsgsltkgteanRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLcltsdpentvstniingggrnpvfnenlKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVlvkngklekefslsstdlfhspagfVQLSLAyagaspdvmaipavpkplaadetaqeseisesldriefpdpkivnenqMMVSEYFGiscsnmdtetseslvssdarnqvsseirapvvesfstatvesvqhpkldsppssvstngvsspsvaassdssdspvvskpqnqeqeppskekkvdvgegesdssggvlsdainkpvvsvniepeqkVVQQDIVDMYMKSMQQFTESLAKmklpldidsgppsstssgnsstdqklqaskntgsrvfygsraff
Flexible Loop (DISEMBL)
mdspqsvvspfkssvaaepekhksdffarsgsltkgteanRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTniingggrnpvfnenLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPDVMAIPAVPKPLAADETAQEseisesldriefpdpkiVNENQMMVSEYFGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESvqhpkldsppssvstnGVSSPSVaassdssdspvvskpqnqeqeppskekkvdvgegesdssggvlsdainKPVVSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPpsstssgnsstdqklqaskntgsrvfygsraff
Low Complexity Region (SEG)
MDSPQSVVSPFKSSVAAEPEKHKSDFFARSGSLTKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPDVMAIPAVPKPLAADETAQESEISESLDRIEFPDPKIVNENQMMVSEYFGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESVQHPKLDsppssvstngvsspsvaassdssdspvvsKPQNQEQEPPSKEKKvdvgegesdssggvlsdAINKPVVSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDsgppsstssgnsstDQKLQASKNTGSRVFYGSRAFF
Disordered region (IsUnstruct)
*********************************************MSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPDVMAI*************************************MMVSEYFGISC****************************************************************************************************************VVSVNI****KVVQQDIVDMYM********************************************************
Disordered Region (DISOPRED)
*****************************************************IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFS*************VQLSLAYAGA***********************************************************************************************************************************************************************VVSVNIEPEQKVVQQDIV*****************************************************YGSRAFF
Disordered Region (DISEMBL)
*********************HKSDFFARSGSLTKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPDVMAIPAVPKPL*************SLDRIEFPDPKIVNENQMMVSEYFGISCSNMD****************SSEIRAPVVESFS*********************************************************************GVLSDAINKPVVSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDS***********************GSRVFYGSRAFF
Disordered Region (DISPRO)
************SS*A*******S**FARSGSLTKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPDV*********************SESLDRIEFPDPKIVNENQMMVSEYFGISCS***********************************************************************************************************INKPVVSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPL***************************G*********FF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSPQSVVSPFKSSVAAEPEKHKSDFFARSGSLTKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPDVMAIPAVPKPLAADETAQESEISESLDRIEFPDPKIVNENQMMVSEYFGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESVQHPKLDSPPSSVSTNGVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKEKKVDVGEGESDSSGGVLSDAINKPVVSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKLQASKNTGSRVFYGSRAFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
255576298	429	conserved hypothetical protein [Ricinus	0.986	0.988	0.756	1e-179
224116570	432	predicted protein [Populus trichocarpa]	0.990	0.986	0.717	1e-169
225460783	437	PREDICTED: uncharacterized protein LOC10	0.988	0.972	0.703	1e-166
224056427	432	predicted protein [Populus trichocarpa]	0.990	0.986	0.722	1e-162
356566596	428	PREDICTED: uncharacterized protein LOC10	0.983	0.988	0.694	1e-160
449466923	428	PREDICTED: uncharacterized protein LOC10	0.981	0.985	0.676	1e-151
357459935	430	hypothetical protein MTR_3g055960 [Medic	0.981	0.981	0.682	1e-147
255642002	434	unknown [Glycine max]	0.920	0.912	0.705	1e-147
217074344	432	unknown [Medicago truncatula] gi|3885149	0.981	0.976	0.680	1e-147
147783403	776	hypothetical protein VITISV_003516 [Viti	0.834	0.462	0.723	1e-146

>gi|255576298|ref|XP_002529042.1| conserved hypothetical protein [Ricinus communis] gi|223531522|gb|EEF33353.1| conserved hypothetical protein [Ricinus communis]

 Score =  633 bits (1633), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 329/435 (75%), Positives = 373/435 (85%), Gaps = 11/435 (2%)

Query: 1   MDSPQSVVSPFKSSVAAEPEKHKSDFFARS-GSLTKGTEANRKEAVMSNLGGNFIGVLEV 59
           MDSPQSVVSPFK+SV  EPEK  SD   R+   L+KG E  RKEA++ N   ++IG+LEV
Sbjct: 1   MDSPQSVVSPFKTSVVLEPEKQNSDHSVRNLVKLSKGVEVQRKEAMVGN-PEDYIGILEV 59

Query: 60  YIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES 119
           YIHQARDIHNICIYHKQDVYAK+CLTSDPENTVST IINGGGRNPVFN+NL+LNVKTVES
Sbjct: 60  YIHQARDIHNICIYHKQDVYAKICLTSDPENTVSTKIINGGGRNPVFNDNLRLNVKTVES 119

Query: 120 SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLS 179
           SLKCEIFMMSRV+NYLEDQLLGF LVPLSEV++KNGKLEKEFSLSSTDLFHSPAGFVQLS
Sbjct: 120 SLKCEIFMMSRVRNYLEDQLLGFALVPLSEVVIKNGKLEKEFSLSSTDLFHSPAGFVQLS 179

Query: 180 LAYAGASPDVMAIPAVPKPLAADETAQESEISESL---DRIEFPDPKIVNENQMMVSEYF 236
           L+Y G+SP+VMAIPA+P   A D T Q++EI ESL   D++EFPDPKIVNENQMMVSEYF
Sbjct: 180 LSYIGSSPEVMAIPAMPTAQATDGTVQDTEIQESLSEFDKLEFPDPKIVNENQMMVSEYF 239

Query: 237 GISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESVQHPKLDSPPSSVSTNG 296
           GISC+N D+ETSESLV+S+  N VSSE+ A VVES+STATV+SV+ PK DSPPSSVSTNG
Sbjct: 240 GISCTNEDSETSESLVTSEVENHVSSEMGANVVESYSTATVDSVEAPKHDSPPSSVSTNG 299

Query: 297 VSSPSVAASSDSSDSPVVSKPQNQEQEPPSKEKKVDVGEGESDSS-GGVLSDAINKPVVS 355
           VSSPS+AASSD+SD+P VSK   QE E   K+KK   G+GESDSS GG  S+   KPV++
Sbjct: 300 VSSPSLAASSDTSDAPAVSKTPYQEHESARKDKK--GGDGESDSSFGGAQSEKTAKPVIT 357

Query: 356 VNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKLQAS 415
           VNIEPEQ VVQQDIVDMYMKSMQQFTESLAKMKLPLDIDS     TSSG+S++DQK+Q+S
Sbjct: 358 VNIEPEQNVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDS---GPTSSGSSTSDQKMQSS 414

Query: 416 KNTGSRVFYGSRAFF 430
           KN+ SRVFYGSRAFF
Sbjct: 415 KNSSSRVFYGSRAFF 429

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116570|ref|XP_002317334.1| predicted protein [Populus trichocarpa] gi|222860399|gb|EEE97946.1| predicted protein [Populus trichocarpa]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 313/436 (71%), Positives = 366/436 (83%), Gaps = 10/436 (2%)

Query: 1   MDSPQSVVSPFKSSVAAEPEKHKSDFFARS-GSLTKGTEANRKEAVMSNLGGNFIGVLEV 59
           MDSPQSVVSPFK+SV  E EK K D+  +S GS +KG E +R +AV+ NL  +F+GV+EV
Sbjct: 1   MDSPQSVVSPFKTSVGFETEKQKYDYPVQSTGSFSKGIEIHRNDAVVGNLE-DFVGVVEV 59

Query: 60  YIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES 119
           YIHQARDI NICIYHKQDVYAK CLTSDPE+TVST IINGGGRNPVFN++L+LNVKTV+S
Sbjct: 60  YIHQARDIQNICIYHKQDVYAKFCLTSDPEHTVSTKIINGGGRNPVFNDSLRLNVKTVDS 119

Query: 120 SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLS 179
           SLKCE+FMMSRV+NYLEDQLLGF LVPLSEVL+ NG L+KEFSLSSTDLF+SPAGFVQLS
Sbjct: 120 SLKCEVFMMSRVRNYLEDQLLGFALVPLSEVLINNGNLDKEFSLSSTDLFYSPAGFVQLS 179

Query: 180 LAYAGASPDVMAIPAVPKPLAADETAQESEISESL----DRIEFPDPKIVNENQMMVSEY 235
           L+Y+GASP+VMAIPA+P  LAA+ T Q+SEI ESL    D+IEFPDPK+VNENQMMVSEY
Sbjct: 180 LSYSGASPEVMAIPAIPTALAANGTIQDSEIQESLPCEFDKIEFPDPKVVNENQMMVSEY 239

Query: 236 FGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESVQHPKLDSPPSSVSTN 295
           FGI CS++D+E SESL +SD  N +SSE    VVESFS AT +S+Q PKL SPPSSVSTN
Sbjct: 240 FGIPCSSLDSEASESLATSDTENYLSSENGVHVVESFSAATSDSIQVPKLGSPPSSVSTN 299

Query: 296 GVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKEKK-VDVGEGESDSSGGVLSDAINKPVV 354
           GVSSPSV ASS++SDSP  SK  N +     KE++  +V +GE+DSSGG  ++ I KPV+
Sbjct: 300 GVSSPSVDASSETSDSPAASKTPNLDHVSDRKERESTNVRDGETDSSGGASNEKIAKPVI 359

Query: 355 SVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKLQA 414
           +VNIEPE  +VQQDIVDMYMKSMQQFTESLAKMKLPLDI+S     TSSG+SS+D+ +QA
Sbjct: 360 TVNIEPETNMVQQDIVDMYMKSMQQFTESLAKMKLPLDIES---GPTSSGSSSSDKNVQA 416

Query: 415 SKNTGSRVFYGSRAFF 430
           SKNTGSRVFYGSRAFF
Sbjct: 417 SKNTGSRVFYGSRAFF 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460783|ref|XP_002274753.1| PREDICTED: uncharacterized protein LOC100262283 [Vitis vinifera]

 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 311/442 (70%), Positives = 359/442 (81%), Gaps = 17/442 (3%)

Query: 1   MDSPQSVVSPFKSS-VAAEPEKHKSDFFARS-GSLTKGTEANRKEAVMSNLGGNFIGVLE 58
           MDSPQSVVSPFKSS V+ EPEK KSD F R+ G L+ G E +RKE+ M      F+G LE
Sbjct: 1   MDSPQSVVSPFKSSPVSIEPEKQKSDLFVRNPGCLSGGIEVHRKESGMVCNMDAFVGSLE 60

Query: 59  VYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE 118
           VYIHQARDIHNICIYHKQDVYAKLCLTSDPEN VST IINGGG+NPVFN+NL+L+V+T E
Sbjct: 61  VYIHQARDIHNICIYHKQDVYAKLCLTSDPENAVSTKIINGGGQNPVFNDNLRLSVRTTE 120

Query: 119 SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQL 178
           SSLKCEI+M+SRVKNYLEDQLLGF LVPLSEVL+ NGKLEKEFSLSSTDLFHSPAGFV+L
Sbjct: 121 SSLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLLNNGKLEKEFSLSSTDLFHSPAGFVRL 180

Query: 179 SLAYAGASPDVMAIPAVPKPLAADETAQESEISESL----DRIEFPDPKIVNENQMMVSE 234
           SL+Y GASP+VMAIPA+P  LA +E +Q++EISES+    D IEFPDPKI+NENQ+MVSE
Sbjct: 181 SLSYNGASPEVMAIPALPTALATNEASQDTEISESMPSDYDAIEFPDPKIMNENQLMVSE 240

Query: 235 YFGISCSNMDTETSESLVSSDARNQVSSE-IRAPVVESFSTATVESVQHPKLDSPPSSVS 293
           YFGI C+N+D+ +SE  + +D+   +SSE +   VVESFS  T+ESVQ PKLDSPPSSVS
Sbjct: 241 YFGIPCTNLDSRSSEGTLDNDS--HLSSEKLGVQVVESFSEGTIESVQLPKLDSPPSSVS 298

Query: 294 TNGVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKEKKVDVGEGESDSSGGVLSDAINKPV 353
           TNG  S S+ ASS SSD+   SK  N+E   P KEK  D G+GESDSSGG   +   KP 
Sbjct: 299 TNGSPSASLPASSVSSDASGTSKSPNEEHVSPPKEKNADTGDGESDSSGGAPCNTFAKPA 358

Query: 354 VSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKLQ 413
           V+VNIEPEQK+VQQDIVDMYMKSMQQFTESLAKMKLP+DI++ P   T+SGNSS+DQKLQ
Sbjct: 359 VTVNIEPEQKMVQQDIVDMYMKSMQQFTESLAKMKLPMDIETEP---TNSGNSSSDQKLQ 415

Query: 414 ASK-----NTGSRVFYGSRAFF 430
           A+K     N  SRVFYGSRAFF
Sbjct: 416 AAKNNNNNNNNSRVFYGSRAFF 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056427|ref|XP_002298851.1| predicted protein [Populus trichocarpa] gi|222846109|gb|EEE83656.1| predicted protein [Populus trichocarpa]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 315/436 (72%), Positives = 358/436 (82%), Gaps = 10/436 (2%)

Query: 1   MDSPQSVVSPFKSSVAAEPEKHKSDFFARS-GSLTKGTEANRKEAVMSNLGGNFIGVLEV 59
           MDSPQSVVSPFK+SV  EPEK KSD   +S G+L+KG E  R EAV  +   +FIG++EV
Sbjct: 1   MDSPQSVVSPFKTSVVFEPEKQKSDCSVQSTGNLSKGIEFPRHEAVAGH-PEDFIGIVEV 59

Query: 60  YIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES 119
           Y+HQARDI NICIYHKQDVYAK CLTSDPE T ST IINGGGRNPVFN+ L+LNVKT++S
Sbjct: 60  YVHQARDIQNICIYHKQDVYAKFCLTSDPEYTFSTKIINGGGRNPVFNDRLQLNVKTIDS 119

Query: 120 SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLS 179
           SLKCEIFMMSRVKNYLEDQLLGF LVPLSEVL+ NG LEKEFSLSSTDLFHSPAGFVQLS
Sbjct: 120 SLKCEIFMMSRVKNYLEDQLLGFALVPLSEVLINNGNLEKEFSLSSTDLFHSPAGFVQLS 179

Query: 180 LAYAGASPDVMAIPAVPKPLAADETAQESEISES----LDRIEFPDPKIVNENQMMVSEY 235
           L+Y GASP+VM IPA+P  LA + T Q+SEI ES    LD+IEFPDPK+VNENQMM+SEY
Sbjct: 180 LSYVGASPEVMEIPAMPTALATNGTIQDSEIQESLPCELDKIEFPDPKVVNENQMMISEY 239

Query: 236 FGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESVQHPKLDSPPSSVSTN 295
           FGISCS++D+E SESL  S+A N + SEI   V+ES S AT +  Q PKLDSPPSSVSTN
Sbjct: 240 FGISCSSLDSEASESLAISNAENNLGSEIGVHVMESISAATSDPTQVPKLDSPPSSVSTN 299

Query: 296 GVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKEKK-VDVGEGESDSSGGVLSDAINKPVV 354
           GVSSPS AASS++SDSP  SK  NQE     KE++  + G+GE+D SGG  ++   KPV+
Sbjct: 300 GVSSPSAAASSETSDSPAASKTPNQEHVSVHKERESANAGDGETDCSGGASNEKNAKPVI 359

Query: 355 SVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKLQA 414
           +VNIEPE KVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDS     TSSG+SS+DQK+QA
Sbjct: 360 TVNIEPESKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDS---GPTSSGSSSSDQKMQA 416

Query: 415 SKNTGSRVFYGSRAFF 430
           SKNT SRVFYGSRAFF
Sbjct: 417 SKNTSSRVFYGSRAFF 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566596|ref|XP_003551516.1| PREDICTED: uncharacterized protein LOC100796499 isoform 1 [Glycine max] gi|356566598|ref|XP_003551517.1| PREDICTED: uncharacterized protein LOC100796499 isoform 2 [Glycine max] gi|356566600|ref|XP_003551518.1| PREDICTED: uncharacterized protein LOC100796499 isoform 3 [Glycine max] gi|356566602|ref|XP_003551519.1| PREDICTED: uncharacterized protein LOC100796499 isoform 4 [Glycine max]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 302/435 (69%), Positives = 351/435 (80%), Gaps = 12/435 (2%)

Query: 1   MDSPQSVVSPFKSSVAAEPEKHKSDFF-ARSGSLTKGTEANRKEAVMSNLGGNFIGVLEV 59
           MDSPQSVVSPF+SSV  E EKHKSD F   S   +K  E N KE VMSN+   ++GVL+V
Sbjct: 1   MDSPQSVVSPFRSSVLGESEKHKSDVFPGNSSPFSKDIEVNGKEVVMSNVE-EYLGVLDV 59

Query: 60  YIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES 119
           YIHQARDI NICIYHKQDVYAK+CLTS+PE TVST  INGGGRNPVFNENL+++V+TV++
Sbjct: 60  YIHQARDIQNICIYHKQDVYAKICLTSNPETTVSTKTINGGGRNPVFNENLRIDVRTVDA 119

Query: 120 SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLS 179
           SLKCEI+M+SRVKNYLEDQLLGF LVPLSEVLV+NGKLEKEFSLSSTDLFHSP+GFVQLS
Sbjct: 120 SLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLS 179

Query: 180 LAYAGASPDVMAIPAVPKPLAADETAQESEISES----LDRIEFPDPKIVNENQMMVSEY 235
           L+Y GASPDVM I A+P  +A D   Q+SE SES    LD+IEFPDPKIVNE+ +MVSEY
Sbjct: 180 LSYTGASPDVMTISAMPNKVATDAAVQDSETSESLARDLDKIEFPDPKIVNEDHLMVSEY 239

Query: 236 FGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESVQHPKLDSPPSSVSTN 295
           FGI C   +T+ S+SL +SDA NQ SSE    +VESFS  +VESVQ  K+DSPPSSVSTN
Sbjct: 240 FGIPCE--ETQCSDSLATSDAENQ-SSEAGVRLVESFSACSVESVQPTKVDSPPSSVSTN 296

Query: 296 GVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKEKKVDVGEGESDSSGGVLSDAINKPVVS 355
           GVSSPSV A+S+SSD+        ++     ++K VD  + ESDSS GV S++  KPVV+
Sbjct: 297 GVSSPSVPANSESSDAAASKSSIQEQVSGTKEDKNVDTKDSESDSSSGVPSESFPKPVVT 356

Query: 356 VNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKLQAS 415
           VNIEPE KVVQQDIVDMYMKSMQQFTESLAKMKLP+D++S P   TSSGNS+T+QKLQ S
Sbjct: 357 VNIEPEPKVVQQDIVDMYMKSMQQFTESLAKMKLPMDLESEP---TSSGNSTTEQKLQPS 413

Query: 416 KNTGSRVFYGSRAFF 430
           K+  SRVFYGSRAFF
Sbjct: 414 KSNNSRVFYGSRAFF 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466923|ref|XP_004151175.1| PREDICTED: uncharacterized protein LOC101214591 isoform 1 [Cucumis sativus] gi|449466925|ref|XP_004151176.1| PREDICTED: uncharacterized protein LOC101214591 isoform 2 [Cucumis sativus] gi|449518525|ref|XP_004166292.1| PREDICTED: uncharacterized protein LOC101226546 isoform 1 [Cucumis sativus] gi|449518527|ref|XP_004166293.1| PREDICTED: uncharacterized protein LOC101226546 isoform 2 [Cucumis sativus]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 295/436 (67%), Positives = 347/436 (79%), Gaps = 14/436 (3%)

Query: 1   MDSPQSVVSPFKSSVAAEPEKHKSDFFAR-SGSLTKGTEANRKEAVMSNLGGNFIGVLEV 59
           MDSPQSVVSP K+ + AE EK K  FF   SG  TKG E NRKEAVM NL    +G L+V
Sbjct: 1   MDSPQSVVSPLKNCLIAESEKKKPSFFDHISGPPTKGMEVNRKEAVMYNLE-EVVGALDV 59

Query: 60  YIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES 119
            IHQARDIHNICIYHKQDVYAKLCL++DPE+++ST IING GRNPVFNENL+ NV++V++
Sbjct: 60  CIHQARDIHNICIYHKQDVYAKLCLSTDPEDSLSTKIINGAGRNPVFNENLRFNVRSVDA 119

Query: 120 SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLS 179
           SLKCEI+M+SRV+NYLEDQLLGFT+VPL+EVLV +GKLEKEFSLSSTDLFHSPAGFVQLS
Sbjct: 120 SLKCEIWMLSRVRNYLEDQLLGFTVVPLTEVLVNDGKLEKEFSLSSTDLFHSPAGFVQLS 179

Query: 180 LAYAGASPDVMAIP-AVPKPLAADETAQESEISES----LDRIEFPDPKIVNENQMMVSE 234
           L Y G SPDVMA+P AV +  +++   ++SEISES    LD+IEFPDPKIVNE++MMVSE
Sbjct: 180 LEYNGTSPDVMAVPKAVLE--SSNAALKDSEISESLASDLDKIEFPDPKIVNEDEMMVSE 237

Query: 235 YFGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESVQHPKLDSPPSSVST 294
           YF I  SN ++E SESL +S   +  SSE     VESFSTA++ESVQ  KLDSPPSS ST
Sbjct: 238 YFSIPGSNPESEDSESLATSGTEDHPSSETGVNTVESFSTASIESVQISKLDSPPSSSST 297

Query: 295 NGVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKEKKVDVGEGESDSSGGVLSDAINKPVV 354
           NG SS  V  SS+S D+   SKPQ   QEP  +EK VDV  G+ DSS  V +D+ +KPV+
Sbjct: 298 NGASSSPVPTSSESYDASEASKPQT--QEPIEEEKHVDVKNGKPDSSIEVPNDSFSKPVI 355

Query: 355 SVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKLQA 414
           +VNIEPEQ VVQQDIVDMYMKSMQQFTESLAKMKLPLD+D+ P   T+SGNSS+DQ+  +
Sbjct: 356 TVNIEPEQNVVQQDIVDMYMKSMQQFTESLAKMKLPLDVDNEP---TNSGNSSSDQQTPS 412

Query: 415 SKNTGSRVFYGSRAFF 430
           SKN  +RVFYGSRAFF
Sbjct: 413 SKNGNARVFYGSRAFF 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357459935|ref|XP_003600249.1| hypothetical protein MTR_3g055960 [Medicago truncatula] gi|355489297|gb|AES70500.1| hypothetical protein MTR_3g055960 [Medicago truncatula]

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 299/438 (68%), Positives = 349/438 (79%), Gaps = 16/438 (3%)

Query: 1   MDSPQSVVSPFKSSVAAEPEKHKSDFFARS-GSLTKGTEANRKEAVMSNLGGNFIGVLEV 59
           MDSPQSVVSPF++SV  E EKHKSD   +S G  +K  E N KE +MSN     +GVL+V
Sbjct: 1   MDSPQSVVSPFRTSVLGEGEKHKSDVTTQSNGPSSKDIEVNGKETIMSN-AEECVGVLDV 59

Query: 60  YIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES 119
           YIHQARDI NICIYHKQDVYAK+ LTS+PEN+VST  INGGGRNPVFN+NL+LNV  V+S
Sbjct: 60  YIHQARDIQNICIYHKQDVYAKIYLTSNPENSVSTKTINGGGRNPVFNDNLRLNVWDVDS 119

Query: 120 SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLS 179
           SLKCE++M+SRVKNYLEDQLLGF LVPLSEVLV+NGKLEKEFSLSSTDLFHSP+GFVQLS
Sbjct: 120 SLKCELWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLS 179

Query: 180 LAYAGASPDVMAIPAVPKPLAADETAQESEISES----LDRIEFPDPKIVNENQMMVSEY 235
           +AY GA+PDVMAI A+P  +A   T Q+SE  ES    LD+IEFPDPKIVNE+ +MVSEY
Sbjct: 180 IAYTGATPDVMAISAMPGKVATHVTQQDSETCESLARDLDKIEFPDPKIVNEDHLMVSEY 239

Query: 236 FGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVES--VQHPKLDSPPSSVS 293
           FGISC   +T+ S+SL +SDA N  SSE    +VESFS  + ES  V+ PK++SPPSSVS
Sbjct: 240 FGISCE--ETQCSDSLATSDAENH-SSEAGVRLVESFSACSGESVHVEPPKVESPPSSVS 296

Query: 294 TNGVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKE-KKVDVGEGESDSSGGVLSDAINKP 352
           TNGVSSPS   SS+SSD+   SK  + EQ   +KE KKVDV +GESDSS  V SD   KP
Sbjct: 297 TNGVSSPSAHESSESSDAAAASKSPSHEQVSGTKEVKKVDVKDGESDSSSVVPSDLFPKP 356

Query: 353 VVSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKL 412
           VV+VN+ PE ++VQQDIVDMYMKSMQQFTESLAKMKLP+DI+S P   T+SGNSST+QKL
Sbjct: 357 VVTVNM-PEPQMVQQDIVDMYMKSMQQFTESLAKMKLPMDIESEP---TTSGNSSTEQKL 412

Query: 413 QASKNTGSRVFYGSRAFF 430
             +KN  SRV+YGSRAFF
Sbjct: 413 PQTKNANSRVYYGSRAFF 430

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642002|gb|ACU21268.1| unknown [Glycine max]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 287/407 (70%), Positives = 332/407 (81%), Gaps = 11/407 (2%)

Query: 1   MDSPQSVVSPFKSSVAAEPEKHKSDFFARSGS-LTKGTEANRKEAVMSNLGGNFIGVLEV 59
           MDSPQSVVSPF+SSV  E EKHKSD F+ + S L+K  E N KE VMSN+   F+GVL+V
Sbjct: 1   MDSPQSVVSPFRSSVLGEGEKHKSDVFSGNSSPLSKDIEVNGKEVVMSNVE-EFLGVLDV 59

Query: 60  YIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES 119
           YIHQARDI NICIYHKQDVYAK+ LTS+PE T+ST  INGGGRNPVFNENL+++V+TV++
Sbjct: 60  YIHQARDIQNICIYHKQDVYAKISLTSNPETTMSTKTINGGGRNPVFNENLRIDVRTVDA 119

Query: 120 SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLS 179
           SLKCEI+M+SRVKNYLEDQLLGF LVPLSEVLV+NGKLEKEFSLSSTDLFHSP+GFVQLS
Sbjct: 120 SLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLS 179

Query: 180 LAYAGASPDVMAIPAVPKPLAADETAQESEISES----LDRIEFPDPKIVNENQMMVSEY 235
           L+Y GASPDVMAI A+P  +A D T Q+S+ SES    LD+IEFPDPKIVNE+ +MVSEY
Sbjct: 180 LSYTGASPDVMAISAMPNKVATDGTVQDSDTSESLARDLDKIEFPDPKIVNEDHLMVSEY 239

Query: 236 FGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVESVQHPKLDSPPSSVSTN 295
           FGI C   +T+ S+SL +SDA N  SSE    +VESFS  +VESVQ  K+DSPPSSVSTN
Sbjct: 240 FGIRCK--ETQCSDSLATSDAENH-SSEAGVQLVESFSACSVESVQPTKVDSPPSSVSTN 296

Query: 296 GVSSPSVAASSDSSDSPVVSKPQN-QEQEPPSKE-KKVDVGEGESDSSGGVLSDAINKPV 353
           GVSSPSV A+S+SSD+   +     QEQ   +KE K VD  +GESDSS GV  D+  KPV
Sbjct: 297 GVSSPSVPATSESSDAAAAASKSPIQEQVSGTKEDKNVDAKDGESDSSCGVPIDSFPKPV 356

Query: 354 VSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSS 400
           VSVNIEPE KVVQQDIVDMYMKSMQQFTESLAKMKLP+D++S P SS
Sbjct: 357 VSVNIEPEPKVVQQDIVDMYMKSMQQFTESLAKMKLPMDLESEPTSS 403

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217074344|gb|ACJ85532.1| unknown [Medicago truncatula] gi|388514933|gb|AFK45528.1| unknown [Medicago truncatula]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 298/438 (68%), Positives = 349/438 (79%), Gaps = 16/438 (3%)

Query: 1   MDSPQSVVSPFKSSVAAEPEKHKSDFFARS-GSLTKGTEANRKEAVMSNLGGNFIGVLEV 59
           MDSPQSVVSPF++SV  E EKHKSD   +S G  +K  E N KE +MSN     +GVL+V
Sbjct: 3   MDSPQSVVSPFRTSVLGEGEKHKSDVTTQSNGPSSKDIEVNGKETIMSN-AEECVGVLDV 61

Query: 60  YIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES 119
           YIHQARDI NICIYH+QDVYAK+ LTS+PEN+VST  INGGGRNPVFN+NL+LNV  V+S
Sbjct: 62  YIHQARDIQNICIYHEQDVYAKIYLTSNPENSVSTKTINGGGRNPVFNDNLRLNVWDVDS 121

Query: 120 SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLS 179
           SLKCE++M+SRVKNYLEDQLLGF LVPLSEVLV+NGKLEKEFSLSSTDLFHSP+GFVQLS
Sbjct: 122 SLKCELWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLS 181

Query: 180 LAYAGASPDVMAIPAVPKPLAADETAQESEISES----LDRIEFPDPKIVNENQMMVSEY 235
           +AY GA+PDVMAI A+P  +A   T Q+SE  ES    LD+IEFPDPKIVNE+ +MVSEY
Sbjct: 182 IAYTGATPDVMAISAMPGKVATHVTQQDSETCESLARDLDKIEFPDPKIVNEDHLMVSEY 241

Query: 236 FGISCSNMDTETSESLVSSDARNQVSSEIRAPVVESFSTATVES--VQHPKLDSPPSSVS 293
           FGISC   +T+ S+SL +SDA N  SSE    +VESFS  + ES  V+ PK++SPPSSVS
Sbjct: 242 FGISCE--ETQCSDSLATSDAENH-SSEAGVRLVESFSACSGESVHVEPPKVESPPSSVS 298

Query: 294 TNGVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKE-KKVDVGEGESDSSGGVLSDAINKP 352
           TNGVSSPS   SS+SSD+   SK  + EQ   +KE KKVDV +GESDSS  V SD   KP
Sbjct: 299 TNGVSSPSAHESSESSDAAAASKSPSHEQVSGTKEVKKVDVKDGESDSSSVVPSDLFPKP 358

Query: 353 VVSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSSTDQKL 412
           VV+VN+ PE ++VQQDIVDMYMKSMQQFTESLAKMKLP+DI+S P   T+SGNSST+QKL
Sbjct: 359 VVTVNM-PEPQMVQQDIVDMYMKSMQQFTESLAKMKLPMDIESEP---TTSGNSSTEQKL 414

Query: 413 QASKNTGSRVFYGSRAFF 430
             +KN  SRV+YGSRAFF
Sbjct: 415 PQTKNANSRVYYGSRAFF 432

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783403|emb|CAN75215.1| hypothetical protein VITISV_003516 [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/369 (72%), Positives = 311/369 (84%), Gaps = 10/369 (2%)

Query: 53  FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKL 112
           F+G LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPEN VST IINGGG+NPVFN+NL+L
Sbjct: 8   FVGSLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENAVSTKIINGGGQNPVFNDNLRL 67

Query: 113 NVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSP 172
           +V+T+ESSLKCEI+M+SRVKNYLEDQLLGF LVPLSEVL+ NGKLEKEFSLSSTDLFHSP
Sbjct: 68  SVRTMESSLKCEIWMLSRVKNYLEDQLLGFALVPLSEVLLNNGKLEKEFSLSSTDLFHSP 127

Query: 173 AGFVQLSLAYAGASPDVMAIPAVPKPLAADETAQESEISESL----DRIEFPDPKIVNEN 228
           AGFV+LSL+Y GASP+VMAIPA+P  LA +E +Q++EISES+    D IEFPDPKI+NEN
Sbjct: 128 AGFVRLSLSYNGASPEVMAIPALPTALATNEASQDTEISESMPSDYDAIEFPDPKIMNEN 187

Query: 229 QMMVSEYFGISCSNMDTETSESLVSSDARNQVSSE-IRAPVVESFSTATVESVQHPKLDS 287
           Q+MVSEYFGI C+N+D+ +SE  + +D+   +SSE +   VVESFS  T+ESVQ PKLDS
Sbjct: 188 QLMVSEYFGIPCTNLDSRSSEGTLDNDS--HLSSEKLGVQVVESFSEGTIESVQLPKLDS 245

Query: 288 PPSSVSTNGVSSPSVAASSDSSDSPVVSKPQNQEQEPPSKEKKVDVGEGESDSSGGVLSD 347
           PPSSVSTNG  S S+ ASS SSD+   SK  N+E   P KEK  D G+GESDSSGG   +
Sbjct: 246 PPSSVSTNGSPSASLPASSVSSDASGTSKSPNEEHVSPPKEKNADTGDGESDSSGGAPCN 305

Query: 348 AINKPVVSVNIEPEQKVVQQDIVDMYMKSMQQFTESLAKMKLPLDIDSGPPSSTSSGNSS 407
              KP V+VNIEPEQK+VQQDIVDMYMKSMQQFTESLAKMKLP+DI++ P   T+SGNSS
Sbjct: 306 TFAKPAVTVNIEPEQKMVQQDIVDMYMKSMQQFTESLAKMKLPMDIETEP---TNSGNSS 362

Query: 408 TDQKLQASK 416
           +DQKLQA+K
Sbjct: 363 SDQKLQAAK 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
TAIR|locus:2173937	405	AT5G55530 "AT5G55530" [Arabido	0.602	0.639	0.661	4.2e-115
TAIR|locus:2008011	388	AT1G50570 "AT1G50570" [Arabido	0.565	0.626	0.608	2.5e-74
TAIR|locus:505006598	374	AT5G12300 "AT5G12300" [Arabido	0.432	0.497	0.481	3.3e-59
TAIR|locus:2146688	540	SYTC "AT5G04220" [Arabidopsis	0.239	0.190	0.333	0.00042

TAIR|locus:2173937 AT5G55530 "AT5G55530" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 4.2e-115, Sum P(2) = 4.2e-115
 Identities = 178/269 (66%), Positives = 220/269 (81%)

Query:     1 MDSPQSVVSPFKSSVAAEPEKHKSDFFARSGSLTKGTEANRKEAVMSNLGG-NFIGVLEV 59
             MDSPQSVVSPFK     E E   S+    SG+ + G  +N K++   + G  + +G LEV
Sbjct:     1 MDSPQSVVSPFK---IGESENENSNSVQSSGNQSNGINSNGKDS--KSCGRQDLVGALEV 55

Query:    60 YIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES 119
             Y+HQARDIHNICIYHKQDVYAKLCLTSDP+ +VST IINGGGRNPVF++N+KL+V+ +++
Sbjct:    56 YVHQARDIHNICIYHKQDVYAKLCLTSDPDKSVSTKIINGGGRNPVFDDNVKLDVRVLDT 115

Query:   120 SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLS 179
             SLKCEI+MMSRVKNYLEDQLLGFTLVP+SE+L KNGKLEKEFSLSSTDL+HSPAGFVQLS
Sbjct:   116 SLKCEIYMMSRVKNYLEDQLLGFTLVPMSELLFKNGKLEKEFSLSSTDLYHSPAGFVQLS 175

Query:   180 LAYAGASPDVMAIPAVPKPLAADETAQESEISES----LDRIEFPDPKIVNENQMMVSEY 235
             L+Y G+ PDVMAIP++P  ++ DET ++ E SES    LD+IEFPDP + NEN+ MVSEY
Sbjct:   176 LSYYGSYPDVMAIPSMPSSVSIDETTKDPEGSESVPGELDKIEFPDPNVANENEKMVSEY 235

Query:   236 FGISCSNMDTETSESLVSSDARNQVSSEI 264
             FGISCS +D+ETS+SLV+SDA N V++ +
Sbjct:   236 FGISCSTIDSETSDSLVTSDAENHVTNSV 264

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008011 AT1G50570 "AT1G50570" [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
 Identities = 154/253 (60%), Positives = 191/253 (75%)

Query:    30 SGSL-TKGT-EANRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSD 87
             +GS+   G+ E   K  VMS+   +FIGVLEV++HQARDIHNICIYHKQDVYAKLCLT+D
Sbjct:    12 NGSIHLNGSGETKTKNIVMSSDSDSFIGVLEVFVHQARDIHNICIYHKQDVYAKLCLTND 71

Query:    88 PENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPL 147
             PEN++ST IINGGG+NPVF++ L+ +VK ++ SLKCEIFMMSRVKNYLEDQLLGF+LVPL
Sbjct:    72 PENSLSTKIINGGGQNPVFDDTLQFDVKNLDCSLKCEIFMMSRVKNYLEDQLLGFSLVPL 131

Query:   148 SEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPDVMAIPAVPKPLAADETAQE 207
             SEV+V+NGKLEKEFSLSSTDL+HSPAGFV+LSL+YAG SPDVM IPAVP       TA E
Sbjct:   132 SEVIVRNGKLEKEFSLSSTDLYHSPAGFVELSLSYAGDSPDVMHIPAVP-------TADE 184

Query:   208 SEISE-SLDRIEFPDPKIVNENQMMVSEYFGISCSNMDTETSESLVSSDARNQVSSEIRA 266
             +E++    D  EF DPKIV EN  MVS+YF  +CS+ D   S      +  + +S+ +  
Sbjct:   185 TELAPIEFDESEFLDPKIVCENNQMVSKYFSTTCSDSDDFASSETGFVEVNSILSAVVET 244

Query:   267 PVVESFSTATVES 279
              V E+    +V +
Sbjct:   245 AVDEAAPANSVST 257

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:505006598 AT5G12300 "AT5G12300" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 3.3e-59, Sum P(2) = 3.3e-59
 Identities = 93/193 (48%), Positives = 140/193 (72%)

Query:    53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKL 112
             F GVL+VY+H AR+I+NICIY  QDVYAK  LT +P++T+ST II+  G+NP FN+ L +
Sbjct:    19 FSGVLQVYVHNARNINNICIYDNQDVYAKFSLTYNPDDTISTRIIHRAGKNPEFNQKLMI 78

Query:   113 NVKTVESS---LKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF 169
             +V  +++    LKCEI+MMSR ++Y+EDQLLGF LVP+S+++ ++  + +++SLSSTDLF
Sbjct:    79 DVTQIDAHAAVLKCEIWMMSRARHYMEDQLLGFALVPISDIIGQDS-VTQDYSLSSTDLF 137

Query:   170 HSPAGFVQLSLAYAGASPDVMAIPAV-PKPLAADETAQESEISESLD--RIEFPDPKIVN 226
             HSPAG V+L+L+    S    + P +    ++++    + ++SE++D  RIEFPD  + N
Sbjct:   138 HSPAGTVKLTLSIVNPSSTSSSNPKINTTSISSEVVLLDPQVSETVDYTRIEFPDINVAN 197

Query:   227 ENQMMVSEYFGIS 239
             EN+ MV+EYF  S
Sbjct:   198 ENKQMVTEYFNES 210

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2146688 SYTC "AT5G04220" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
 Identities = 37/111 (33%), Positives = 56/111 (50%)

Query:    54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
             +G+L V I +AR++    +    D Y KL LT +      T I      NP +NE+ KL 
Sbjct:   260 VGLLHVSILRARNLLKKDLLGTSDPYVKLSLTGEKLPAKKTTI-KKRNLNPEWNEHFKLI 318

Query:   114 VKTVESS-LKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSL 163
             VK   S  L+ E+F   +V  +  D+L G  ++PL ++   N    KEF+L
Sbjct:   319 VKDPNSQVLQLEVFDWDKVGGH--DRL-GMQMIPLQKI---NPGERKEFNL 363

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	430
cd00030	102	cd00030, C2, C2 domain	2e-11
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	3e-10
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	5e-09
pfam00168	85	pfam00168, C2, C2 domain	5e-08
smart00239	101	smart00239, C2, Protein kinase C conserved region	7e-08
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-04

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 57  LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT 116
           L V + +AR++    +  K D Y K+ L    +    T ++     NPV+NE  +  V  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSL--GGKQKFKTKVVK-NTLNPVWNETFEFPVLD 57

Query: 117 VESS-LKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSL 163
            ES  L  E++       + +D  LG   +PLSE+L    + E    L
Sbjct: 58  PESDTLTVEVW---DKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score = 57.2 bits (139), Expect = 3e-10
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 10/113 (8%)

Query: 57  LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV-- 114
           LE+ I  A D+ N+ ++ K  VYA +    DP +  ST +   GG NP +NE L+  +  
Sbjct: 2   LEITIISAEDLKNVNLFGKMKVYAVV--WIDPSHKQSTPVDRDGGTNPTWNETLRFPLDE 59

Query: 115 ---KTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164
              +    +L  E++     +  L D+L+G   VPL ++L       +   LS
Sbjct: 60  RLLQQGRLALTIEVY---CERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLS 109

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 53.4 bits (129), Expect = 5e-09
 Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
           G L V + +AR++ N     KQD Y  L +      T  T     GG++P ++E L+  +
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEI 57

Query: 115 -KTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPA 173
            +  +  LK  +F      +  +  L+G T V LS  L K G+ +  + L+    +   A
Sbjct: 58  TEDKKPILKVAVF----DDDKRKPDLIGDTEVDLSPAL-KEGEFDDWYELTLKGRY---A 109

Query: 174 GFVQLSLAY 182
           G V L L +
Sbjct: 110 GEVYLELTF 118

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 57  LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT 116
           L V +  A+++    +  K D Y K+ L    ++T  T ++     NPV+NE     V  
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVK-NTLNPVWNETFTFEVTL 59

Query: 117 VE-SSLKCEIFMMSRVKNYLEDQLLG 141
            E + L+ E++   R     +D  +G
Sbjct: 60  PELAELRIEVYDYDRFG---KDDFIG 82

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 49.8 bits (119), Expect = 7e-08
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)

Query: 56  VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVK 115
            L V I  AR++       K D Y K+ L  DP+    T ++     NPV+NE  +  V 
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTL-NPVWNETFEFEVP 59

Query: 116 TVESS-LKCEIFMMSRVKNYLEDQLLGFTLVPLSEVL 151
             E + L+ E++   R      D  +G   +PLS++L
Sbjct: 60  PPELAELEIEVYDKDRFG---RDDFIGQVTIPLSDLL 93

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 54  IGVLEVYIHQARDIHNICIYHKQ-DVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKL 112
           IGVL V I  AR +    I     D Y    +++  E    T +      NPV+NE   +
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRE-LARTKVKK-DTSNPVWNETKYI 58

Query: 113 NVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVL 151
            V ++   L   ++  +  +    D+L+G     LS +L
Sbjct: 59  LVNSLTEPLNLTVYDFNDKRK---DKLIGTAEFDLSSLL 94

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	430
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.92
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.87
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.85
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.85
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.85
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.85
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.84
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.84
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.83
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.82
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.82
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.82
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.81
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.81
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.81
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.81
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.81
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.81
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.8
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.8
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.8
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.8
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.79
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.79
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.79
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.79
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.79
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.77
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.77
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.77
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.76
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.76
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.76
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.76
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.76
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.76
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.76
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.76
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.76
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.75
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.75
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.74
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.74
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.74
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.73
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.73
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.73
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.73
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.73
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.72
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.72
PLN03008	868	Phospholipase D delta	99.72
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.71
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.71
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.71
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.71
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.71
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.7
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.7
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.7
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.69
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.69
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.69
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.68
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.68
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.68
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.67
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.66
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.65
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.65
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.65
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.65
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.64
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.63
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.63
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.62
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.62
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.62
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.61
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.6
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.6
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.6
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.59
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.59
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.59
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.59
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.59
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.59
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.58
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.58
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.57
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.57
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.57
PLN02270	808	phospholipase D alpha	99.52
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.49
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.47
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.35
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.35
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.32
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.31
PLN02223	537	phosphoinositide phospholipase C	99.3
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.27
PLN02952	599	phosphoinositide phospholipase C	99.2
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.17
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.17
PLN02230	598	phosphoinositide phospholipase C 4	99.14
PLN02228	567	Phosphoinositide phospholipase C	99.12
PLN02222	581	phosphoinositide phospholipase C 2	99.08
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.08
PLN02352	758	phospholipase D epsilon	99.06
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.02
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.99
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.97
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.78
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.41
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.35
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.32
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.27
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.27
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.98
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	97.95
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.89
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.6
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.47
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.37
KOG3837	523	consensus Uncharacterized conserved protein, conta	97.17
PLN02964	644	phosphatidylserine decarboxylase	97.02
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.97
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.84
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.75
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	96.68
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.39
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	95.95
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.88
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	95.72
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	94.48
PF15627	156	CEP76-C2: CEP76 C2 domain	94.41
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	93.13
KOG1327	529	consensus Copine [Signal transduction mechanisms]	93.08
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.78
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	92.52
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	92.12
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	91.63
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	91.43
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	91.31
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	90.94
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	90.61
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	88.81
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	86.96
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	85.78
KOG1452	442	consensus Predicted Rho GTPase-activating protein	81.82

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.92  E-value=2.8e-24  Score=188.20  Aligned_cols=119  Identities=20%  Similarity=0.339  Sum_probs=99.5

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecc
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKN  133 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded  133 (430)
                      .|.|+|+|++|++|++.+ +|++||||+|+|++   +++||+|+.+++.||+|||+|+|.|.+....|.+    .++|+|
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~---~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~----~V~d~d   72 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH---AVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYI----EIFDER   72 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECC---EEEEeEEccCCCCCCccCeEEEEEecCCCcEEEE----EEEeCC
Confidence            489999999999999998 89999999999965   6889999988789999999999999864334444    449999


Q ss_pred             cc-cCceeEEEEEeCcc-ccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          134 YL-EDQLLGFTLVPLSE-VLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       134 ~v-~DdlIG~a~VPLsd-Ll~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                      .+ .|++||.+.|+|.. +.. +...+.||+|..... ....|.|+|+|+|
T Consensus        73 ~~~~dd~iG~~~i~l~~~~~~-g~~~~~W~~L~~~~~-~~~~g~i~l~l~y  121 (121)
T cd04016          73 AFTMDERIAWTHITIPESVFN-GETLDDWYSLSGKQG-EDKEGMINLVFSY  121 (121)
T ss_pred             CCcCCceEEEEEEECchhccC-CCCccccEeCcCccC-CCCceEEEEEEeC
Confidence            87 69999999999974 654 566789999975332 2467999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.87  E-value=5.8e-22  Score=168.72  Aligned_cols=117  Identities=29%  Similarity=0.385  Sum_probs=99.6

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeecc
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKN  133 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded  133 (430)
                      |.|+|+|++|+||++.+.++++||||+|++.+   .+++|+++.+++.||+|||+|.|.+... ...|.++|    +|++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v----~d~~   73 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG---VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAV----FDDD   73 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC---CccccccccCCCCCCccCceEEEEecCCCCCEEEEEE----EeCC
Confidence            68999999999999999999999999999975   6789999877679999999999999873 34566655    7777


Q ss_pred             cccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          134 YLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       134 ~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                      ..+|++||.+.++|.++.. +....+||+|...   +..+|.|+|+|+|
T Consensus        74 ~~~~~~iG~~~~~l~~~~~-~~~~~~w~~L~~~---~~~~G~i~l~l~f  118 (118)
T cd08681          74 KRKPDLIGDTEVDLSPALK-EGEFDDWYELTLK---GRYAGEVYLELTF  118 (118)
T ss_pred             CCCCcceEEEEEecHHHhh-cCCCCCcEEeccC---CcEeeEEEEEEEC
Confidence            6679999999999999986 4556799999643   2468999999987

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.85  E-value=6.9e-21  Score=165.11  Aligned_cols=120  Identities=19%  Similarity=0.199  Sum_probs=100.0

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC----CceEEEEEEEEee
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE----SSLKCEIFMMSRV  131 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d----~~LkleV~v~v~D  131 (430)
                      .|+|+|++|++|...+..+..||||+|++.+   +++||+++++ +.||+|||+|.|.+....    ..|.++    ++|
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~---~~~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~----V~d   72 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG---QKKRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVLEVY----VYN   72 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EEecceeEcC-CCCCccceEEEEEccCHHHccCCeEEEE----Eee
Confidence            3899999999999999889999999999975   5889999986 799999999999998532    234444    478


Q ss_pred             cccc--cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          132 KNYL--EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       132 ed~v--~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                      ++.+  +|++||.+.|+|.++...+.....||+|..+...+.++|+|+|.+.|+
T Consensus        73 ~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          73 DRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            7766  699999999999999854456679999986554556899999999885

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.85  E-value=1.8e-20  Score=161.04  Aligned_cols=120  Identities=19%  Similarity=0.301  Sum_probs=101.6

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL  135 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v  135 (430)
                      .|+|+|++|++|+..+..+..||||++.+.+.  ..++|+++++ +.||+|||+|.|.+......|.++|    +|++.+
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~--~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v----~D~d~~   73 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGK--TVYKSKTIYK-NLNPVWDEKFTLPIEDVTQPLYIKV----FDYDRG   73 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCE--EEEEeeeccC-CCCCccceeEEEEecCCCCeEEEEE----EeCCCC
Confidence            38999999999999999999999999999652  5789999987 7999999999999987555566655    888887


Q ss_pred             -cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                       +|++||.+.++|.++.. ++..+.|++|..... ....|.|+|.++|.|
T Consensus        74 ~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~-~~~~G~l~l~~~~~~  121 (121)
T cd04042          74 LTDDFMGSAFVDLSTLEL-NKPTEVKLKLEDPNS-DEDLGYISLVVTLTP  121 (121)
T ss_pred             CCCcceEEEEEEHHHcCC-CCCeEEEEECCCCCC-ccCceEEEEEEEECC
Confidence             79999999999999997 566788999964321 246899999999976

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.85  E-value=1.6e-20  Score=160.81  Aligned_cols=117  Identities=22%  Similarity=0.384  Sum_probs=98.6

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~  134 (430)
                      .|+|+|++|++|++.+..++.||||++++.+.+..++||+++++ +.||+|||+|.|.+... ...|+++|    +|++.
T Consensus         1 ~L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v~v----~d~d~   75 (119)
T cd04036           1 LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLELTV----MDEDY   75 (119)
T ss_pred             CeEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEEEE----EECCC
Confidence            38999999999999998999999999999765557889999997 69999999999999863 23455554    88877


Q ss_pred             ccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          135 LEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       135 v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                      ++|++||++.++|.++.. +.....||+|..     .++|.|++++.+.
T Consensus        76 ~~~~~iG~~~~~l~~l~~-g~~~~~~~~L~~-----~~~g~l~~~~~~~  118 (119)
T cd04036          76 VMDDHLGTVLFDVSKLKL-GEKVRVTFSLNP-----QGKEELEVEFLLE  118 (119)
T ss_pred             CCCcccEEEEEEHHHCCC-CCcEEEEEECCC-----CCCceEEEEEEee
Confidence            789999999999999987 577889999963     3589999988764

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.85  E-value=1.4e-20  Score=162.96  Aligned_cols=117  Identities=21%  Similarity=0.297  Sum_probs=94.2

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC------CCceEEEEEEEEe
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV------ESSLKCEIFMMSR  130 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~------d~~LkleV~v~v~  130 (430)
                      |+|+|++|+||+..+..|.+||||+|++..   .++||+++++ +.||+|||+|.|.|...      ...|.++    ++
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~---~~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~----v~   72 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK---EKYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLT----VM   72 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECC---eeeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEE----EE
Confidence            589999999999999999999999999964   6889999998 69999999999999762      2334444    48


Q ss_pred             ecccc-cCceeEEEEEeCcccccc-CceeeEEEEccCCCCC-CCCCcEEEEEEE
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVK-NGKLEKEFSLSSTDLF-HSPAGFVQLSLA  181 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~-~~~l~~~f~Lss~dl~-~~p~G~I~LsLs  181 (430)
                      |++.+ .|++||.+.|+|.++... +.....||+|...... .+.+|+|+|+++
T Consensus        73 d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          73 HRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             EccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            88877 699999999999999832 4556799999743221 235799999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.84  E-value=3.7e-20  Score=168.29  Aligned_cols=123  Identities=22%  Similarity=0.382  Sum_probs=100.8

Q ss_pred             cceEEEEEEEeccCCCCCC------------------------------CCCCCCcEEEEEEeCCCCCeEEeeeecCCCC
Q 014112           53 FIGVLEVYIHQARDIHNIC------------------------------IYHKQDVYAKLCLTSDPENTVSTNIINGGGR  102 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~d------------------------------i~gk~DPYVkVsL~~~p~~k~KTkVikngG~  102 (430)
                      .+|+|+|+|++|++|+++|                              ..|.+||||+|++.+.  +..||+++++ +.
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~--~~~rT~v~~~-~~   81 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGA--RVARTRVIEN-SE   81 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCe--EeeEEEEeCC-CC
Confidence            4799999999999999987                              3467899999999753  4579999987 69


Q ss_pred             CCeecceEEEEeCcCCCceEEEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCC-CCCcEEEEEEE
Q 014112          103 NPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFH-SPAGFVQLSLA  181 (430)
Q Consensus       103 NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~-~p~G~I~LsLs  181 (430)
                      ||+|||+|.|.+......|.++|    +|.+.+++++||.+.+||.++.. ++..+.||+|......+ .+.|.|+|+++
T Consensus        82 nP~WnE~F~~~~~~~~~~l~~~V----~d~d~~~~~~IG~~~i~l~~l~~-g~~~~~w~~L~~~~~~~~~~~~~l~v~~~  156 (158)
T cd04015          82 NPVWNESFHIYCAHYASHVEFTV----KDNDVVGAQLIGRAYIPVEDLLS-GEPVEGWLPILDSNGKPPKPGAKIRVSLQ  156 (158)
T ss_pred             CCccceEEEEEccCCCCEEEEEE----EeCCCcCCcEEEEEEEEhHHccC-CCCcceEEECcCCCCCCCCCCCEEEEEEE
Confidence            99999999999987554555544    88888888999999999999986 56778999997543222 34689999999


Q ss_pred             EE
Q 014112          182 YA  183 (430)
Q Consensus       182 f~  183 (430)
                      |.
T Consensus       157 f~  158 (158)
T cd04015         157 FT  158 (158)
T ss_pred             EC
Confidence            84

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=2.8e-20  Score=168.00  Aligned_cols=125  Identities=22%  Similarity=0.235  Sum_probs=102.2

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~  134 (430)
                      .|+|+|++|+||+..+.+|++||||+|+|.+   +++||+++.+++.||+|||+|.|.+.+. ...+.++|    +|++.
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~---~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V----~d~~~   73 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN---QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSV----EDRVG   73 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC---EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEE----EEecC
Confidence            4899999999999999999999999999975   6889999987679999999999999763 23444444    77776


Q ss_pred             c-cCceeEEEEEeCcccccc---CceeeEEEEccCCCC------CCCCCcEEEEEEEEEccCC
Q 014112          135 L-EDQLLGFTLVPLSEVLVK---NGKLEKEFSLSSTDL------FHSPAGFVQLSLAYAGASP  187 (430)
Q Consensus       135 v-~DdlIG~a~VPLsdLl~~---~~~l~~~f~Lss~dl------~~~p~G~I~LsLsf~p~~p  187 (430)
                      + +|++||.+.|||.++..+   +....+||+|.....      ..+.+|+|+|.|+|.+.+.
T Consensus        74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~  136 (150)
T cd04019          74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYH  136 (150)
T ss_pred             CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcce
Confidence            6 799999999999999753   234679999975431      1246799999999998874

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=3.5e-20  Score=163.48  Aligned_cols=114  Identities=20%  Similarity=0.166  Sum_probs=94.9

Q ss_pred             EEEEEEEeccC---CCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112           56 VLEVYIHQARD---IHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK  132 (430)
Q Consensus        56 ~L~VtVisArn---Lkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De  132 (430)
                      .|+|+|++|+|   |+..+..|.+||||+|.+++   +++||+++++ +.||+|||+|.|.+.+....|.++|    +|+
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~---~~~rTk~~~~-~~nP~WnE~f~f~v~~~~~~l~v~V----~d~   72 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP---KWVRTRTVED-SSNPRWNEQYTWPVYDPCTVLTVGV----FDN   72 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECC---EEeEcCcccC-CCCCcceeEEEEEecCCCCEEEEEE----EEC
Confidence            48999999999   89999999999999999965   6889999997 7999999999999987555555555    777


Q ss_pred             ccc-------cCceeEEEEEeCccccccCceeeEEEEccCCCCC-CCCCcEEEE
Q 014112          133 NYL-------EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF-HSPAGFVQL  178 (430)
Q Consensus       133 d~v-------~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~-~~p~G~I~L  178 (430)
                      +.+       +|++||++.|+|..+.. +.....||+|...+.. .++.|.|++
T Consensus        73 d~~~~~~~~~~dd~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          73 SQSHWKEAVQPDVLIGKVRIRLSTLED-DRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             CCccccccCCCCceEEEEEEEHHHccC-CCEEeeEEEeEeCCCCCccCCcEEEe
Confidence            665       79999999999999987 5778899999754422 346787765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=1.4e-19  Score=158.45  Aligned_cols=106  Identities=17%  Similarity=0.268  Sum_probs=84.5

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeC----CCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTS----DPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~----~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      .|+|+|++|+||+..+ .|.+||||+|+|.+    ...++++|+++++ +.||+|||+|.|.|...+..-...|.+.++|
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D   78 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDDPESYELHICVKD   78 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence            3899999999999887 49999999999954    2234679999976 7999999999999985322111224445588


Q ss_pred             cccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      ++.. .|++||.+.|||+++.. ++....|++|.
T Consensus        79 ~d~~~~dd~IG~~~l~l~~~~~-~~~~~~w~~L~  111 (120)
T cd08395          79 YCFARDDRLVGVTVLQLRDIAQ-AGSCACWLPLG  111 (120)
T ss_pred             ecccCCCCEEEEEEEEHHHCcC-CCcEEEEEECc
Confidence            8766 59999999999999997 56778999995

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.82  E-value=7.3e-20  Score=157.57  Aligned_cols=115  Identities=27%  Similarity=0.447  Sum_probs=95.5

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-----CCceEEEEEEEEe
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-----ESSLKCEIFMMSR  130 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-----d~~LkleV~v~v~  130 (430)
                      +|+|+|++|++|++.+.++++||||+|++.+.  .+++|+++.+++.||+|||+|+|.+...     ...|.++|    +
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~--~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v----~   74 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS--HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEV----Y   74 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCC--cccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEE----E
Confidence            58999999999999999999999999999763  5889999987789999999999999875     23455544    8


Q ss_pred             ecccc-cCceeEEEEEeCccccccCce----eeEEEEccCCCCCCCCCcEEEE
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNGK----LEKEFSLSSTDLFHSPAGFVQL  178 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~~----l~~~f~Lss~dl~~~p~G~I~L  178 (430)
                      |++.+ .|++||.+.|+|.++..+...    ...||+|....  ++++|.|+|
T Consensus        75 d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~~G~~~~  125 (125)
T cd04051          75 CERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKPQGVLNF  125 (125)
T ss_pred             ECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCcCeEEeC
Confidence            88875 799999999999999975321    35799997544  678999875

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.82  E-value=1.6e-19  Score=156.75  Aligned_cols=123  Identities=27%  Similarity=0.358  Sum_probs=99.9

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC----CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP----ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p----~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      +|+|+|++|+||+..+..+..||||+|.+.+..    ..+++|+++++ +.||+|||+|.|.+......|.++|    +|
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v----~d   75 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPREHRLLFEV----FD   75 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCCCEEEEEE----EE
Confidence            489999999999999999999999999997641    12679999987 7999999999999976545555554    78


Q ss_pred             cccc-cCceeEEEEEeCccccccCc-----eeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLVKNG-----KLEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~~~~-----~l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                      ++.+ +|++||.+.++|.++..+..     -..+||+|..........|.|+|++.|.
T Consensus        76 ~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          76 ENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            8877 69999999999999997422     2358999975433345799999999984

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=3.1e-19  Score=151.69  Aligned_cols=117  Identities=21%  Similarity=0.298  Sum_probs=98.4

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~  134 (430)
                      |.|+|+|++|+||+..+..+.+||||+|.+.+   ..++|+++++ +.||+|||+|.|.+......|.++|    +|++.
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~~T~~~~~-t~nP~W~e~f~~~~~~~~~~l~~~v----~d~~~   72 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN---ARLQTHTIYK-TLNPEWNKIFTFPIKDIHDVLEVTV----YDEDK   72 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC---EeeecceecC-CcCCccCcEEEEEecCcCCEEEEEE----EECCC
Confidence            68999999999999999999999999999965   4689999987 7999999999999976545555555    77776


Q ss_pred             c-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                      . .|++||.+.++|.++..+ .  ..||.|.........+|.|.|+++|
T Consensus        73 ~~~~~~iG~~~~~l~~~~~~-~--~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          73 DKKPEFLGKVAIPLLSIKNG-E--RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             CCCCceeeEEEEEHHHCCCC-C--ceEEECcccCCCCceeeEEEEEEEe
Confidence            5 799999999999998752 2  5799997554444579999999987

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.81  E-value=4.4e-19  Score=154.66  Aligned_cols=121  Identities=18%  Similarity=0.234  Sum_probs=95.0

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC-CceEEEEEEEEee
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE-SSLKCEIFMMSRV  131 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d-~~LkleV~v~v~D  131 (430)
                      ....|+|+|++|+||+..   +..||||+|+|.+.  +..||++ ++ +.||+|||+|.|.+...+ ..+.+    .++|
T Consensus         2 ~~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~--~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~~~l~v----~v~d   70 (126)
T cd08400           2 QVRSLQLNVLEAHKLPVK---HVPHPYCVISLNEV--KVARTKV-RE-GPNPVWSEEFVFDDLPPDVNSFTI----SLSN   70 (126)
T ss_pred             ceeEEEEEEEEeeCCCCC---CCCCeeEEEEECCE--eEEEeec-CC-CCCCccCCEEEEecCCCCcCEEEE----EEEE
Confidence            356899999999999874   46899999999642  4578997 44 699999999999876532 23443    3477


Q ss_pred             cccc-cCceeEEEEEeCccccccCceeeEEEEccCCCC-CCCCCcEEEEEEEEEcc
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL-FHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl-~~~p~G~I~LsLsf~p~  185 (430)
                      .+.. +|++||.+.|||.++.. ++..+.||+|..... .....|.|+|+|+|.+.
T Consensus        71 ~~~~~~d~~iG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          71 KAKRSKDSEIAEVTVQLSKLQN-GQETDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             CCCCCCCCeEEEEEEEHhHccC-CCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            7766 79999999999999987 577789999975432 12457999999999875

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.81  E-value=3.2e-19  Score=152.02  Aligned_cols=121  Identities=26%  Similarity=0.330  Sum_probs=97.3

Q ss_pred             ceEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112           54 IGVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK  132 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De  132 (430)
                      .|.|+|+|++|+||++.+.. +..||||++++.+. ...++|+++++ +.||+|||.|.|.+......|.++|    +|+
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~-~~~P~Wne~~~~~v~~~~~~l~~~v----~d~   74 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKD-TSNPVWNETKYILVNSLTEPLNLTV----YDF   74 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecC-CCCCcceEEEEEEeCCCCCEEEEEE----Eec
Confidence            48999999999999977654 67999999999763 36889999987 7999999999999986455666665    777


Q ss_pred             ccc-cCceeEEEEEeCccccccCceee-EEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          133 NYL-EDQLLGFTLVPLSEVLVKNGKLE-KEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       133 d~v-~DdlIG~a~VPLsdLl~~~~~l~-~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      +.. +|++||.+.++|.++..+ +..+ .++.|..   .++++|.|+++|+|.|
T Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~-~~~~~~~~~~~~---~~k~~G~i~~~l~~~p  124 (124)
T cd04044          75 NDKRKDKLIGTAEFDLSSLLQN-PEQENLTKNLLR---NGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCCCCCceeEEEEEEHHHhccC-ccccCcchhhhc---CCccceEEEEEEEeCC
Confidence            766 799999999999999974 4433 3444432   2457999999999986

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.81  E-value=4e-19  Score=150.88  Aligned_cols=114  Identities=19%  Similarity=0.260  Sum_probs=97.6

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~  134 (430)
                      .|+|+|++|+||+..+..+..||||++++.+   .+++|+++++ +.||+|||+|.|.+... ...|.++|    +|++.
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~v----~d~~~   72 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN---EKYKSKVCSK-TLNPQWLEQFDLHLFDDQSQILEIEV----WDKDT   72 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECC---EeEecccccC-CCCCceeEEEEEEecCCCCCEEEEEE----EECCC
Confidence            4899999999999999999999999999964   6889999987 79999999999999874 44556555    78887


Q ss_pred             c-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      + .|++||.+.++|.++.. ++....||+|..      .+|+|+|.+.|.+
T Consensus        73 ~~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~------~~G~~~~~~~~~~  116 (116)
T cd08376          73 GKKDEFIGRCEIDLSALPR-EQTHSLELELED------GEGSLLLLLTLTG  116 (116)
T ss_pred             CCCCCeEEEEEEeHHHCCC-CCceEEEEEccC------CCcEEEEEEEecC
Confidence            6 79999999999999986 567789999952      3699999999863

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.81  E-value=5.2e-19  Score=153.55  Aligned_cols=118  Identities=19%  Similarity=0.265  Sum_probs=95.9

Q ss_pred             EEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc
Q 014112           57 LEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL  135 (430)
Q Consensus        57 L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v  135 (430)
                      |.|+|++|+||+..+ ..|..||||+|.+...  ..+||+++++ +.||+|||+|.|.|......|.+.|    +|.+.+
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~--~~~kT~v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v----~d~~~~   74 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQE--EVFRTKTVEK-SLCPFFGEDFYFEIPRTFRHLSFYI----YDRDVL   74 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCc--cEEEeeEEEC-CCCCccCCeEEEEcCCCCCEEEEEE----EECCCC
Confidence            789999999999874 4578999999999543  4789999987 7999999999999986434444444    777777


Q ss_pred             -cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                       +|++||.+.++|+++.. ++..+.||+|......+..+|+|+|+++|
T Consensus        75 ~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          75 RRDSVIGKVAIKKEDLHK-YYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             CCCceEEEEEEEHHHccC-CCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence             79999999999999986 56678999997543333458999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.81  E-value=5.6e-19  Score=156.73  Aligned_cols=119  Identities=25%  Similarity=0.417  Sum_probs=98.8

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEE
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMS  129 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v  129 (430)
                      ....|.|+|+|++|++|++.+..+.+||||++++..   ..+||+++++ +.||+|||+|.|.+... ...|.++|    
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~---~~~kT~vi~~-t~nP~Wne~f~f~v~~~~~~~l~i~V----   82 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS---QEHKTKVVSD-TLNPKWNSSMQFFVKDLEQDVLCITV----   82 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC---EeeeccccCC-CCCCccCceEEEEecCccCCEEEEEE----
Confidence            456899999999999999999999999999999964   6899999997 79999999999999763 34566665    


Q ss_pred             eecccc-cCceeEEEEEeCcccccc----CceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVK----NGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~----~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                      +|++.+ .|++||.+.++|.++...    .+...+|..|.     ...+|+|+|++.|
T Consensus        83 ~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~-----~~~~g~i~l~~~~  135 (136)
T cd08375          83 FDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH-----EVPTGEVVVKLDL  135 (136)
T ss_pred             EECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc-----cccceeEEEEEEe
Confidence            888877 699999999999999962    13344666664     2358999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.80  E-value=4.5e-19  Score=150.50  Aligned_cols=114  Identities=25%  Similarity=0.337  Sum_probs=95.9

Q ss_pred             eEEEEEEEeccCCCCCCC------CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEE
Q 014112           55 GVLEVYIHQARDIHNICI------YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFM  127 (430)
Q Consensus        55 g~L~VtVisArnLkn~di------~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v  127 (430)
                      |.|+|+|++|+||+..+.      .+..||||++.+.+   ..++|+++++ +.||+|||+|.|.+... ...|.++|  
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~---~~~kT~~~~~-t~~P~W~e~f~~~v~~~~~~~l~i~v--   74 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA---QTFKSKVIKE-NLNPKWNEVYEAVVDEVPGQELEIEL--   74 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC---EeEEccccCC-CCCCcccceEEEEeCCCCCCEEEEEE--
Confidence            679999999999998875      36899999999975   6899999987 79999999999999763 34555555  


Q ss_pred             EEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          128 MSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       128 ~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                        +|++...|++||.+.++|.++.. ++..+.||+|..     ..+|+|+|.++|
T Consensus        75 --~d~~~~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~-----~~~G~~~~~~~~  121 (121)
T cd08391          75 --FDEDPDKDDFLGRLSIDLGSVEK-KGFIDEWLPLED-----VKSGRLHLKLEW  121 (121)
T ss_pred             --EecCCCCCCcEEEEEEEHHHhcc-cCccceEEECcC-----CCCceEEEEEeC
Confidence              77776689999999999999986 566789999963     258999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.80  E-value=8.9e-19  Score=151.92  Aligned_cols=121  Identities=17%  Similarity=0.281  Sum_probs=98.6

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc-
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL-  135 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v-  135 (430)
                      |.|+|++|+||+.  ..+.+||||++++.. +..++||+++++ +.||+|||+|.|.+......|.++|    +|++.. 
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~-~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v----~d~~~~~   72 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE-PPQKYQSSTQKN-TSNPFWDEHFLFELSPNSKELLFEV----YDNGKKS   72 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECC-CCcEEEeEEEec-CCCCccCceEEEEeCCCCCEEEEEE----EECCCCC
Confidence            6899999999998  779999999999963 336789999997 6999999999999975444555555    788776 


Q ss_pred             cCceeEEEEEeCccccccCceeeEEEEccCCCC-CCCCCcEEEEEEEEEccC
Q 014112          136 EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL-FHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       136 ~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl-~~~p~G~I~LsLsf~p~~  186 (430)
                      +|++||.+.++|.++.. +.....||+|..... .....|.|+|++.|.+..
T Consensus        73 ~~~~lG~~~i~l~~l~~-~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          73 DSKFLGLAIVPFDELRK-NPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             CCceEEEEEEeHHHhcc-CCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            69999999999999997 466678999975422 134699999999997654

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.80  E-value=1.2e-18  Score=151.57  Aligned_cols=122  Identities=16%  Similarity=0.173  Sum_probs=100.0

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK  132 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De  132 (430)
                      +++.|+|+|++|++|+..+.+|+.||||++++.+   +++||+++++ +.||+|||.|.|.+......|+++|    +|+
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~i~V----~d~   72 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG---ESVRSPVQKD-TLSPEFDTQAIFYRKKPRSPIKIQV----WNS   72 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECC---EEEEeCccCC-CCCCcccceEEEEecCCCCEEEEEE----EEC
Confidence            4689999999999999999999999999999975   5899999987 7999999999999876555566665    788


Q ss_pred             ccccCceeEEEEEeCccccccCceeeEEEEccC--CCCCCCCCcEEEEEEEEEcc
Q 014112          133 NYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSS--TDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       133 d~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss--~dl~~~p~G~I~LsLsf~p~  185 (430)
                      +.+.|++||.+.++|.++..   ...++|+|..  ........|.|.|++.+.+-
T Consensus        73 ~~~~d~~lG~~~~~l~~~~~---~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~  124 (126)
T cd04046          73 NLLCDEFLGQATLSADPNDS---QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD  124 (126)
T ss_pred             CCCCCCceEEEEEecccCCC---cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence            87789999999999987642   3347788842  22335679999999987653

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.80  E-value=1.2e-18  Score=152.05  Aligned_cols=117  Identities=17%  Similarity=0.314  Sum_probs=97.3

Q ss_pred             ceEEEEEEEeccCCCCCCCC----------CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEE
Q 014112           54 IGVLEVYIHQARDIHNICIY----------HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKC  123 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~----------gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~Lkl  123 (430)
                      .|.|+|+|++|++|++.+..          +..||||+|++.+.  +..+|+++++ +.||+|||+|.|.|.. ...|.+
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~--~~~kT~~~~~-t~~P~Wne~f~~~v~~-~~~l~~   78 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDT--HIGKTSTKPK-TNSPVWNEEFTTEVHN-GRNLEL   78 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCE--EEeEEeEcCC-CCCCCcceeEEEEcCC-CCEEEE
Confidence            58999999999999988863          57999999999753  4579999887 7999999999999974 345555


Q ss_pred             EEEEEEeecccc-cCceeEEEEEeCcccccc-CceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112          124 EIFMMSRVKNYL-EDQLLGFTLVPLSEVLVK-NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       124 eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~-~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~  185 (430)
                      .|    +|++.+ .|++||.+.++|.++..+ ++..+.||+|.       ++|.|+|.+.|.+.
T Consensus        79 ~v----~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~-------~~G~l~l~~~~~~~  131 (132)
T cd04014          79 TV----FHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE-------PQGKLHVKIELKGS  131 (132)
T ss_pred             EE----EeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc-------CCcEEEEEEEEecC
Confidence            54    777666 689999999999999974 35668999995       68999999999874

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.79  E-value=7.5e-19  Score=152.56  Aligned_cols=115  Identities=22%  Similarity=0.226  Sum_probs=94.7

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEeeccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~Ded~  134 (430)
                      .|+|+|++|+||+..    .+||||++++..   ++.||+++++ +.||+|||+|.|.+.. ....|.++|    +|++.
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~---~~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v----~d~d~   68 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGN---YKGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSV----WDKDK   68 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECC---ccccccccCC-CCCCccceEEEEEcCCCcCCEEEEEE----EeCCC
Confidence            489999999999987    789999999975   6889999987 7999999999999876 345566666    78877


Q ss_pred             ccCceeEEEEEeCccccccC----ceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          135 LEDQLLGFTLVPLSEVLVKN----GKLEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       135 v~DdlIG~a~VPLsdLl~~~----~~l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                      ++|++||.+.++|+++....    ....+||+|..... ..-.|+|+|+|.|.
T Consensus        69 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-~~~~G~i~l~~~~~  120 (121)
T cd08378          69 AKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-GRVGGELMLAVWFG  120 (121)
T ss_pred             CcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-CccceEEEEEEEec
Confidence            78999999999999997632    12458999975432 34689999999985

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.79  E-value=1e-18  Score=150.02  Aligned_cols=120  Identities=26%  Similarity=0.305  Sum_probs=98.4

Q ss_pred             eEEEEEEEeccCCCCCCC--CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEee
Q 014112           55 GVLEVYIHQARDIHNICI--YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRV  131 (430)
Q Consensus        55 g~L~VtVisArnLkn~di--~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~D  131 (430)
                      |.|+|+|++|+||+..+.  .+.+||||+|.+..   .+++|+++++ +.||+|||+|.|.+.. ....|.++|    +|
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~---~~~kT~~~~~-t~~P~Wne~f~~~~~~~~~~~l~i~v----~d   72 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA---QRFKTQTIPN-TLNPKWNYWCEFPIFSAQNQLLKLIL----WD   72 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC---EEEecceecC-CcCCccCCcEEEEecCCCCCEEEEEE----EE
Confidence            689999999999999988  89999999999954   6889999987 7999999999999986 344555555    78


Q ss_pred             cccc-cCceeEEEEEeCcccccc--CceeeEEEEccCCC--CCCCCCcEEEEEEEE
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLVK--NGKLEKEFSLSSTD--LFHSPAGFVQLSLAY  182 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~~--~~~l~~~f~Lss~d--l~~~p~G~I~LsLsf  182 (430)
                      ++.. .|++||.+.++|.++...  .+....||.|....  .....+|+|+|.++|
T Consensus        73 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          73 KDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            7777 799999999999999842  24457899997442  112469999999976

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.79  E-value=1.1e-18  Score=150.88  Aligned_cols=118  Identities=14%  Similarity=0.197  Sum_probs=96.8

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc-
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL-  135 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v-  135 (430)
                      |.|+|++|++|++.+..|++||||++.+.+.  ...||+++++ +.||+|||.|.|.+......|.++|    +|++.+ 
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~kT~v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v----~d~~~~~   74 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNE--VIIRTATVWK-TLNPFWGEEYTVHLPPGFHTVSFYV----LDEDTLS   74 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCE--eeeeeeeEcC-CCCCcccceEEEeeCCCCCEEEEEE----EECCCCC
Confidence            8999999999999999999999999999642  3579999987 7999999999999976445555554    787776 


Q ss_pred             cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEE
Q 014112          136 EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLA  181 (430)
Q Consensus       136 ~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLs  181 (430)
                      .|++||.+.+++.++...++..+.|++|...+..+...|+|+|.++
T Consensus        75 ~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          75 RDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             CCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            6999999999999987533457799999754433446899999875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.79  E-value=2.3e-18  Score=148.14  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=98.5

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeecc
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKN  133 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded  133 (430)
                      +.|+|+|++|++|+..+..+..||||+|++...+...+||+++++ +.||+|||+|.|.+... ...|.++|    +|++
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~i~v----~d~d   75 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWISATV----WDRS   75 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEEEEE----EECC
Confidence            369999999999999999999999999998654345789999987 69999999999999873 34555555    7877


Q ss_pred             cc-cCceeEEEEEeCcccccc--CceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112          134 YL-EDQLLGFTLVPLSEVLVK--NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       134 ~v-~DdlIG~a~VPLsdLl~~--~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~  185 (430)
                      .+ .|++||.+.++|.++...  +.....||+|.       ++|+|+|.|.|...
T Consensus        76 ~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~-------~~g~i~l~~~~~~~  123 (126)
T cd04043          76 FVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-------TQGRLLLRVSMEGE  123 (126)
T ss_pred             CCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC-------CCCeEEEEEEEeee
Confidence            76 799999999999987653  23556899995       58999999998764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.79  E-value=6.5e-19  Score=153.14  Aligned_cols=103  Identities=27%  Similarity=0.407  Sum_probs=86.2

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEe-Cc---CCCceEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNV-KT---VESSLKCEIFM  127 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V-~~---~d~~LkleV~v  127 (430)
                      .+.|+|+|++|+||+..+ .+.+||||+|+|.+++  ..++||+++++ +.||+|||+|.|.+ ..   ....|+++|  
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l~~~~L~~~V--   87 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDLQQRVLQVSV--   87 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHhCCCEEEEEE--
Confidence            478999999999999999 8999999999998764  35789999997 69999999999997 32   123455555  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                        +|++.+ +|++||++.|+|+++.. ++....||+|
T Consensus        88 --~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~W~~L  121 (122)
T cd08381          88 --WSHDSLVENEFLGGVCIPLKKLDL-SQETEKWYPL  121 (122)
T ss_pred             --EeCCCCcCCcEEEEEEEecccccc-CCCccceEEC
Confidence              788776 69999999999999997 4556789987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.77  E-value=3.9e-18  Score=148.83  Aligned_cols=105  Identities=22%  Similarity=0.315  Sum_probs=87.0

Q ss_pred             cceEEEEEEEeccCCCCCCC-CCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICI-YHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIF  126 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di-~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~  126 (430)
                      ..+.|.|+|++|+||+..+. .+..||||+|++.++.  ..++||+++++ +.||+|||+|.|.|...   ...|.++| 
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l~~~~L~~~V-   90 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQLETRTLQLSV-   90 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHhCCCEEEEEE-
Confidence            46889999999999998765 5899999999997654  34789999887 79999999999999762   22455544 


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                         +|.+.+ ++++||.+.|+|.++.. .+..+.||+|
T Consensus        91 ---~d~~~~~~~~~lG~~~i~l~~~~~-~~~~~~w~~l  124 (125)
T cd04029          91 ---WHYDRFGRNTFLGEVEIPLDSWNF-DSQHEECLPL  124 (125)
T ss_pred             ---EECCCCCCCcEEEEEEEeCCcccc-cCCcccEEEC
Confidence               777766 79999999999999987 4667899998

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.77  E-value=1.7e-18  Score=151.72  Aligned_cols=104  Identities=17%  Similarity=0.183  Sum_probs=81.2

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCC-CCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSD-PENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~-p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      ..+.|+|+|++|+||+   ..|.+||||+++|.+. ...+++|++.++ +.||+|||+|.|.|+..+. ....|.+.++|
T Consensus        12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l-~~~tL~~~V~d   86 (118)
T cd08677          12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEES-LDGTLTLTLRC   86 (118)
T ss_pred             cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHh-CCcEEEEEEEe
Confidence            3589999999999999   3467999999999753 346889999987 7999999999999987322 22334455588


Q ss_pred             cccc-cCceeEEEEEeCccccccCceeeEEEE
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFS  162 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~  162 (430)
                      .|.+ ++++||++.++|+++..+ ...++|..
T Consensus        87 ~Drfs~~d~IG~v~l~l~~~~~~-~~~~~W~~  117 (118)
T cd08677          87 CDRFSRHSTLGELRLKLADVSMM-LGAAQWVD  117 (118)
T ss_pred             CCCCCCCceEEEEEEccccccCC-ccccchhc
Confidence            8887 799999999999998542 33345544

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.77  E-value=3.1e-18  Score=149.11  Aligned_cols=104  Identities=24%  Similarity=0.296  Sum_probs=86.8

Q ss_pred             ceEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM  127 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v  127 (430)
                      .+.|+|+|++|+||+..+.. |..||||+++|.+..  ..++||+++++ +.||+|||+|.|.|...   ...|.++|  
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l~~~~L~~~V--   90 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREELPTRVLNLSV--   90 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHhCCCEEEEEE--
Confidence            47899999999999999876 899999999998654  34689999987 69999999999998752   23445544  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                        +|.+.+ ++++||.+.|||.++.. .+....||+|
T Consensus        91 --~d~~~~~~~~~iG~~~i~L~~~~~-~~~~~~W~~L  124 (125)
T cd08393          91 --WHRDSLGRNSFLGEVEVDLGSWDW-SNTQPTWYPL  124 (125)
T ss_pred             --EeCCCCCCCcEeEEEEEecCcccc-CCCCcceEEC
Confidence              887776 79999999999999987 4566789987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.76  E-value=4.9e-18  Score=146.24  Aligned_cols=106  Identities=26%  Similarity=0.356  Sum_probs=90.2

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMS  129 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v  129 (430)
                      ..+.|.|+|++|+||+..+..+..||||+|.+.+.....+||+++++ +.||+|||+|.|.+...   ...|.++|    
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~~~l~i~V----   88 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPKRTLEVLL----   88 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCCCEEEEEE----
Confidence            35899999999999999999999999999999755456899999987 79999999999998863   23455555    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      +|.+.+ +|++||.+.|+|.++.. ++....||.|.
T Consensus        89 ~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~~W~~l~  123 (124)
T cd08387          89 YDFDQFSRDECIGVVELPLAEVDL-SEKLDLWRKIQ  123 (124)
T ss_pred             EECCCCCCCceeEEEEEecccccC-CCCcceEEECc
Confidence            788777 69999999999999997 45778999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.76  E-value=6.1e-18  Score=145.42  Aligned_cols=106  Identities=26%  Similarity=0.284  Sum_probs=89.2

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMS  129 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v  129 (430)
                      ..+.|+|+|++|+||+..+..+..||||+|++.+....++||+++++ +.||+|||+|.|.+...   ...|+++|    
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~V----   88 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGNKTLVFSV----   88 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCCCEEEEEE----
Confidence            35789999999999999999999999999999876556889999987 79999999999998752   23455555    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      +|.+.+ +|++||.+.++|.++.. +...++||.|.
T Consensus        89 ~d~d~~~~~~~lG~~~i~l~~~~~-~~~~~~W~~l~  123 (124)
T cd08385          89 YDFDRFSKHDLIGEVRVPLLTVDL-GHVTEEWRDLE  123 (124)
T ss_pred             EeCCCCCCCceeEEEEEecCcccC-CCCcceEEEcc
Confidence            787776 68999999999999976 45667999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.76  E-value=3.6e-18  Score=148.23  Aligned_cols=105  Identities=17%  Similarity=0.266  Sum_probs=85.0

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      .+.|+|+|++|+||+..+ .+..||||+++|.+.+.  .++||+++++ +.||+|||+|.|.+...+..  -.+.+.+++
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~~--~~l~v~V~~   86 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDYQ--KRLLVTVWN   86 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHhC--CEEEEEEEC
Confidence            478999999999999988 88999999999987653  4779999987 79999999999999763211  113344577


Q ss_pred             cccc--cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          132 KNYL--EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       132 ed~v--~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                      ++..  ++++||.+.|||.++.. +....+||.|
T Consensus        87 ~~~~~~~~~~lG~~~i~l~~~~~-~~~~~~Wy~l  119 (119)
T cd08685          87 KLSKSRDSGLLGCMSFGVKSIVN-QKEISGWYYL  119 (119)
T ss_pred             CCCCcCCCEEEEEEEecHHHhcc-CccccceEeC
Confidence            7655  47999999999999985 5667899976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.76  E-value=5.2e-18  Score=149.28  Aligned_cols=106  Identities=27%  Similarity=0.375  Sum_probs=86.7

Q ss_pred             ceEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM  127 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v  127 (430)
                      .+.|+|+|++|+||+..+.. +..||||+|+|.++.  ..++||+++++ +.||+|||+|.|.|...   ...|.+.|  
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l~~~~L~v~V--   90 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLLSSRQLQVSV--   90 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHhCCcEEEEEE--
Confidence            47999999999999998875 999999999998765  34889999987 79999999999998763   22444444  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccC--ceeeEEEEcc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKN--GKLEKEFSLS  164 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~--~~l~~~f~Ls  164 (430)
                        ++.+.+ ++++||++.|+|+++...+  ....+||+|+
T Consensus        91 --~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          91 --WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             --EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence              777766 7999999999999997642  2556899983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.76  E-value=7e-18  Score=146.16  Aligned_cols=116  Identities=18%  Similarity=0.237  Sum_probs=91.4

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccccc
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLE  136 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~  136 (430)
                      |+|+|++|++|+..+.++..||||+|++.+  .+.+||+++++ +.||+|||+|.|.+.. ...|.++|    +|++.+.
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V----~d~~~~~   73 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG--GQTHSTDVAKK-TLDPKWNEHFDLTVGP-SSIITIQV----FDQKKFK   73 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECC--ccceEccEEcC-CCCCcccceEEEEeCC-CCEEEEEE----EECCCCC
Confidence            899999999999999999999999999964  36899999987 7999999999999976 44566655    7777662


Q ss_pred             ---CceeEEEEEeCccccccCceeeEEEEccCCCC--CCCCCcEEEEEE
Q 014112          137 ---DQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL--FHSPAGFVQLSL  180 (430)
Q Consensus       137 ---DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl--~~~p~G~I~LsL  180 (430)
                         |++||.+.++|.++.........||+|.....  .....|+|.+++
T Consensus        74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             CCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence               58999999999999864333457999843221  223467777765

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=4.8e-18  Score=142.99  Aligned_cols=100  Identities=24%  Similarity=0.394  Sum_probs=85.0

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~  134 (430)
                      .|.|+|++|+||+..+..+.+||||+|.+.+   +++||+++++ +.||+|||+|.|.|... ...|.++|    +|++.
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v----~d~~~   72 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK---TTQKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEV----KDDKT   72 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECC---EEEeCccccC-CCCCcccceEEEEeCCCCCCEEEEEE----EECCC
Confidence            4899999999999999889999999999975   6899999986 79999999999999873 34455555    77765


Q ss_pred             ccCceeEEEEEeCccccccC-ceeeEEEEccC
Q 014112          135 LEDQLLGFTLVPLSEVLVKN-GKLEKEFSLSS  165 (430)
Q Consensus       135 v~DdlIG~a~VPLsdLl~~~-~~l~~~f~Lss  165 (430)
                        |++||.+.|+|.++.... ...++||+|..
T Consensus        73 --~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          73 --GKSLGSLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             --CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence              899999999999998742 35789999963

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.76  E-value=9.5e-18  Score=144.27  Aligned_cols=116  Identities=17%  Similarity=0.248  Sum_probs=94.7

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~  134 (430)
                      .|+|+|++|++|+..+..+.+||||+|++.+   .+++|+++++ +.||+|||+|.|.+... ...|.++|    +|++.
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~---~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v----~d~~~   72 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG---QTLETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEV----WDWDL   72 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECC---EEEeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEE----EECCC
Confidence            4899999999999999889999999999964   5789999987 79999999999999874 33456655    77776


Q ss_pred             c-cCceeEEEEEeCccccccCceeeEEEEccCCCC----CCCCCcEEEEEE
Q 014112          135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL----FHSPAGFVQLSL  180 (430)
Q Consensus       135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl----~~~p~G~I~LsL  180 (430)
                      + .|++||.+.++|.++.. ++....||.|.....    .+...|.|+|.|
T Consensus        73 ~~~~~~iG~~~~~l~~l~~-~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          73 VSKNDFLGKVVFSIQTLQQ-AKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             CCCCcEeEEEEEEHHHccc-CCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            6 68999999999999986 456678999864221    124678888876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.76  E-value=6.7e-18  Score=152.70  Aligned_cols=105  Identities=17%  Similarity=0.232  Sum_probs=86.7

Q ss_pred             ceEEEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           54 IGVLEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      .+.|+|+|++|+||...+ ..+..||||+++|.++..  .++||+++++ +.||+|||+|.|.|......|.++|    +
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l~~~~L~v~V----~  102 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSPTGKTLQVIV----W  102 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcCCCCEEEEEE----E
Confidence            478999999999998764 568899999999987653  4889999987 7999999999999984344566655    5


Q ss_pred             -ecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          131 -VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       131 -Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                       +.+.+ ++++||.+.|+|+++.. ++....||.|.
T Consensus       103 ~d~~~~~~~~~iG~~~i~L~~l~~-~~~~~~Wy~L~  137 (146)
T cd04028         103 GDYGRMDKKVFMGVAQILLDDLDL-SNLVIGWYKLF  137 (146)
T ss_pred             eCCCCCCCCceEEEEEEEcccccC-CCCceeEEecC
Confidence             45555 69999999999999976 45668999996

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.76  E-value=3e-18  Score=157.67  Aligned_cols=95  Identities=24%  Similarity=0.418  Sum_probs=87.2

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ..+.|.|+|+|++|.||...|+.+++||||.|.+++   +++||+++++ +.||+|||.|.|.|.+....|+++|    |
T Consensus         2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~---q~lkT~~v~~-n~NPeWNe~ltf~v~d~~~~lkv~V----y   73 (168)
T KOG1030|consen    2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN---QKLKTRVVYK-NLNPEWNEELTFTVKDPNTPLKVTV----Y   73 (168)
T ss_pred             CccceEEEEEEEeecCeeeeccccCCCCeEEEEECC---eeeeeeeecC-CCCCcccceEEEEecCCCceEEEEE----E
Confidence            357899999999999999999889999999999987   7999999987 6999999999999999877777776    9


Q ss_pred             ecccc-cCceeEEEEEeCcccccc
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVK  153 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~  153 (430)
                      |+|.+ .||++|.|.|||..++..
T Consensus        74 D~D~fs~dD~mG~A~I~l~p~~~~   97 (168)
T KOG1030|consen   74 DKDTFSSDDFMGEATIPLKPLLEA   97 (168)
T ss_pred             eCCCCCcccccceeeeccHHHHHH
Confidence            99998 799999999999999973

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.75  E-value=6.3e-18  Score=148.47  Aligned_cols=106  Identities=18%  Similarity=0.275  Sum_probs=87.4

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC---CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP---ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIF  126 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p---~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~  126 (430)
                      ..+.|+|+|++|+||+..+..+..||||+++|.++.   ..++||+++++ +.||+|||+|.|.|...+   ..|.+.  
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L~~~~L~~~--   88 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKLYQKTLQVD--   88 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHhhcCEEEEE--
Confidence            357899999999999998888889999999999876   35899999987 799999999999998632   234444  


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                        +++.+.+ ++++||.+.|+|.++...++...+||.|
T Consensus        89 --V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          89 --VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             --EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence              4777766 6999999999999996644456788875

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.75  E-value=2.7e-17  Score=142.39  Aligned_cols=116  Identities=19%  Similarity=0.320  Sum_probs=95.7

Q ss_pred             EEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEEeecccc-c
Q 014112           61 IHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMSRVKNYL-E  136 (430)
Q Consensus        61 VisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v~Ded~v-~  136 (430)
                      |++|+||++  .+++.||||+|++.+   .+++|+++++ +.||+|||+|.|.+...   ...|.++|    +|.+.+ .
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~---~~~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v----~d~~~~~~   71 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRG---VKKKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVV----KDYEKVGR   71 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECC---EeeecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEE----EECCCCCC
Confidence            799999999  789999999999965   5789999987 69999999999999753   33455555    887776 6


Q ss_pred             CceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCCC
Q 014112          137 DQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPD  188 (430)
Q Consensus       137 DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p~  188 (430)
                      |++||.+.++|.++.. ++....|++|..... ....|+|+|+++|.|..+.
T Consensus        72 d~~iG~~~~~l~~l~~-~~~~~~~~~L~~~~~-~~~~~~l~l~~~~~~~~~~  121 (127)
T cd08373          72 NRLIGSATVSLQDLVS-EGLLEVTEPLLDSNG-RPTGATISLEVSYQPPDGA  121 (127)
T ss_pred             CceEEEEEEEhhHccc-CCceEEEEeCcCCCC-CcccEEEEEEEEEeCCCCc
Confidence            8999999999999997 577788999964332 2247999999999998754

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.74  E-value=9.6e-18  Score=144.43  Aligned_cols=102  Identities=25%  Similarity=0.402  Sum_probs=87.3

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEEEEe
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFMMSR  130 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v~v~  130 (430)
                      |.|+|+|++|++|++.+.+++.||||+|++..   ..++|+++++++.||+|||+|.|.+...    ...|.++|    +
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~---~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V----~   73 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT---QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRI----M   73 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC---EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEE----E
Confidence            68999999999999999999999999999964   5789999886689999999999999875    23444444    8


Q ss_pred             ecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      |.+.+ +|++||.+.++|.+++. ++..+.||.|.
T Consensus        74 d~~~~~~d~~iG~~~i~l~~l~~-~~~~~~~~~l~  107 (124)
T cd04049          74 DKDNFSDDDFIGEATIHLKGLFE-EGVEPGTAELV  107 (124)
T ss_pred             ECccCCCCCeEEEEEEEhHHhhh-CCCCcCceEee
Confidence            88776 79999999999999997 56678899885

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.74  E-value=6.8e-18  Score=143.58  Aligned_cols=101  Identities=26%  Similarity=0.310  Sum_probs=84.3

Q ss_pred             eEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEEEE
Q 014112           55 GVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFMMS  129 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v~v  129 (430)
                      |+|+|+|++|++|+..+.. ++.||||+|++.+.....++|+++++ +.||+|||+|.|.+...    ...|.++|    
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l~~~V----   75 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKAGERLSCRL----   75 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccCCCEEEEEE----
Confidence            6899999999999999988 99999999999765446789999997 79999999999988653    23455555    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      +|++.+ .|++||.+.++|.+|...    .+|+++.
T Consensus        76 ~d~d~~~~dd~lG~~~i~l~~l~~~----~~~~~~~  107 (111)
T cd04041          76 WDSDRFTADDRLGRVEIDLKELIED----RNWMGRR  107 (111)
T ss_pred             EeCCCCCCCCcceEEEEEHHHHhcC----CCCCccc
Confidence            888877 699999999999999852    4577763

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.74  E-value=2.1e-17  Score=142.13  Aligned_cols=104  Identities=24%  Similarity=0.374  Sum_probs=86.6

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMM  128 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~  128 (430)
                      .+.|+|+|++|+||+..+..+..||||+|++.+..  ..++||+++++ +.||+|||+|.|.+...   ...|.+.|   
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~~~~l~i~v---   90 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELKRRTLDVAV---   90 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhcCCEEEEEE---
Confidence            47899999999999999999999999999997643  36889999997 69999999999998752   23344444   


Q ss_pred             Eeecccc---cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          129 SRVKNYL---EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       129 v~Ded~v---~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                       +|.+.+   +|++||.+.++|.++.. ++....||.|
T Consensus        91 -~~~~~~~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L  126 (127)
T cd04030          91 -KNSKSFLSREKKLLGQVLIDLSDLDL-SKGFTQWYDL  126 (127)
T ss_pred             -EECCcccCCCCceEEEEEEecccccc-cCCccceEEC
Confidence             776653   69999999999999976 4667899988

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.73  E-value=2e-17  Score=144.92  Aligned_cols=105  Identities=25%  Similarity=0.360  Sum_probs=85.4

Q ss_pred             ceEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEE-EeCcC---CCceEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKL-NVKTV---ESSLKCEIFMM  128 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F-~V~~~---d~~LkleV~v~  128 (430)
                      .+.|+|+|++|+||+..+.. +..||||+|+|.+...++.||+++++ +.||+|||+|.| .+...   ...|+++|   
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~~~~~L~~~V---   90 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQLQDLSLHFAV---   90 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHhCCCEEEEEE---
Confidence            47999999999999998887 89999999999876557889999987 799999999999 45532   22345544   


Q ss_pred             Eeecccc-cCceeEEEEEeCcccccc-CceeeEEEEc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVK-NGKLEKEFSL  163 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~-~~~l~~~f~L  163 (430)
                       +|++.+ +|++||.+.|+|+++... ++.+..|.+|
T Consensus        91 -~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~  126 (128)
T cd08388          91 -LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI  126 (128)
T ss_pred             -EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence             777766 799999999999999764 3556777776

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.73  E-value=1.5e-17  Score=144.81  Aligned_cols=105  Identities=24%  Similarity=0.316  Sum_probs=87.1

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEE-eCcC---CCceEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN-VKTV---ESSLKCEIFMM  128 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~-V~~~---d~~LkleV~v~  128 (430)
                      ..+.|+|+|++|+||+..+..+..||||++.+.+...+++||+++++  .||+|||+|.|. +...   +..|.+.    
T Consensus        14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~~~L~~~----   87 (124)
T cd08389          14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNNMALRFR----   87 (124)
T ss_pred             CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhccCEEEEE----
Confidence            35789999999999999998889999999998777667899999763  999999999998 6542   2234444    


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      ++|.+.+ ++++||++.|+|+++.. ++....||+|.
T Consensus        88 V~~~~~~~~~~~lG~~~i~L~~l~~-~~~~~~w~~L~  123 (124)
T cd08389          88 LYGVERMRKERLIGEKVVPLSQLNL-EGETTVWLTLE  123 (124)
T ss_pred             EEECCCcccCceEEEEEEeccccCC-CCCceEEEeCC
Confidence            4887777 69999999999999987 56678999984

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.73  E-value=1.9e-17  Score=142.32  Aligned_cols=107  Identities=17%  Similarity=0.172  Sum_probs=88.1

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFM  127 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v  127 (430)
                      ...+.|+|+|++|+||+..+..+..||||++.+.+...++.||+++++ +.||+|||+|.|.+...    ...|.++|  
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~~~~l~~~v--   89 (125)
T cd08386          13 FQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQQRVLYLQV--   89 (125)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhCCCEEEEEE--
Confidence            346789999999999999999999999999999655556889999987 79999999999985432    12345544  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                        +|++.+ +|++||.+.++|+++.. ++....||.|.
T Consensus        90 --~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~l~  124 (125)
T cd08386          90 --LDYDRFSRNDPIGEVSLPLNKVDL-TEEQTFWKDLK  124 (125)
T ss_pred             --EeCCCCcCCcEeeEEEEecccccC-CCCcceEEecC
Confidence              777766 68999999999999987 46678899883

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.73  E-value=2.6e-17  Score=140.65  Aligned_cols=105  Identities=24%  Similarity=0.383  Sum_probs=86.5

Q ss_pred             cceEEEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIF  126 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~  126 (430)
                      ..+.|+|+|++|+||+..+ ..+..||||+|++.+...  .+.||+++++ +.||+|||+|.|.+...   ...|.++| 
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l~~~~l~i~v-   89 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQLETRTLQLSV-   89 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHhCCCEEEEEE-
Confidence            3578999999999999988 778999999999975432  5789999876 79999999999998863   22455544 


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                         +|.+.+ ++++||.+.++|.++.. ++....||+|
T Consensus        90 ---~d~~~~~~~~~iG~~~i~l~~l~~-~~~~~~w~~l  123 (123)
T cd08521          90 ---WHHDRFGRNTFLGEVEIPLDSWDL-DSQQSEWYPL  123 (123)
T ss_pred             ---EeCCCCcCCceeeEEEEecccccc-cCCCccEEEC
Confidence               777766 68999999999999976 4667889987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.73  E-value=4.4e-17  Score=141.89  Aligned_cols=114  Identities=16%  Similarity=0.248  Sum_probs=92.9

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc-
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY-  134 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~-  134 (430)
                      .|+|+|++|++|+..+..+..||||+|.+..   ..++|+++++ +.||+|||+|.|.+......|.++|    +|.+. 
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~---~~~kT~~v~~-t~~P~Wne~f~f~~~~~~~~l~i~v----~d~d~~   73 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK---TKKRTKTIPQ-NLNPVWNEKFHFECHNSSDRIKVRV----WDEDDD   73 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECC---EeeecceecC-CCCCccceEEEEEecCCCCEEEEEE----EECCCC
Confidence            6899999999999999999999999999954   5789999987 7999999999999876445566655    55552 


Q ss_pred             -----------ccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEE
Q 014112          135 -----------LEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSL  180 (430)
Q Consensus       135 -----------v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsL  180 (430)
                                 ..|++||.+.++|.++..   ....||.|..+..+...+|+|+|.+
T Consensus        74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~~---~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          74 IKSRLKQKFTRESDDFLGQTIIEVRTLSG---EMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             cccccceeccccCCCcceEEEEEhHHccC---CCCeEEECccCCCCCcEeEEEEEEC
Confidence                       258999999999998752   3468999986554445789998874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.72  E-value=6.8e-17  Score=146.15  Aligned_cols=107  Identities=22%  Similarity=0.259  Sum_probs=83.4

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCc------------CCCce
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKT------------VESSL  121 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~------------~d~~L  121 (430)
                      .|+|+|++|+||..  ..|..||||+|.+.+..  ..++||+++++ +.||+|||+|.|.+..            .+..-
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCccccc
Confidence            38999999999998  56899999999998743  24789999987 7999999999999951            11110


Q ss_pred             EEEEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          122 KCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       122 kleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      ...|.+.+++++.+ .|++||.+.|||.++..+.+....||+|..
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            12344555888776 799999999999999873245678999963

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.72  E-value=3.2e-17  Score=139.24  Aligned_cols=100  Identities=20%  Similarity=0.348  Sum_probs=84.6

Q ss_pred             EEEEEEeccCCCCCCC-CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCee-cceEEEEeCcC---CCceEEEEEEEEee
Q 014112           57 LEVYIHQARDIHNICI-YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVF-NENLKLNVKTV---ESSLKCEIFMMSRV  131 (430)
Q Consensus        57 L~VtVisArnLkn~di-~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvW-NEtF~F~V~~~---d~~LkleV~v~v~D  131 (430)
                      |+|+|++|++|+..+. .+..||||++++.+   .++||+++++ +.||+| ||+|.|.+...   +..|.++|    +|
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~---~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~i~V----~d   72 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS---TTYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQIRV----MD   72 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC---eeEecceecC-CCCCcccCcEEEEEcChHHcCCCeEEEEE----Ee
Confidence            6899999999999884 68899999999965   7899999987 699999 99999999863   23555555    88


Q ss_pred             cccc-cCceeEEEEEeCcccccc--CceeeEEEEcc
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLVK--NGKLEKEFSLS  164 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~~--~~~l~~~f~Ls  164 (430)
                      ++.+ +|++||.+.++|.++...  +.....||+|.
T Consensus        73 ~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          73 HDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             CCCCCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            8877 689999999999999973  34577999984

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>PLN03008 Phospholipase D delta

Probab=99.72  E-value=5e-17  Score=178.58  Aligned_cols=128  Identities=13%  Similarity=0.297  Sum_probs=104.6

Q ss_pred             ccceEEEEEEEeccCCCCCCC------------------------------------------CCCCCcEEEEEEeCCCC
Q 014112           52 NFIGVLEVYIHQARDIHNICI------------------------------------------YHKQDVYAKLCLTSDPE   89 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di------------------------------------------~gk~DPYVkVsL~~~p~   89 (430)
                      -.+|+|+|+|++|++|+++++                                          .+++||||+|.|+.+  
T Consensus        11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~--   88 (868)
T PLN03008         11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQA--   88 (868)
T ss_pred             EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCc--
Confidence            358999999999999987333                                          236699999999653  


Q ss_pred             CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCC
Q 014112           90 NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF  169 (430)
Q Consensus        90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~  169 (430)
                      +..||+|+++ +.||+|||+|+|.|.+....|.++|    +|.|.+++++||.+.|||.+|.. +...+.|++|......
T Consensus        89 rv~RTrVi~n-~~NPvWNE~F~f~vah~~s~L~f~V----kD~D~~gaD~IG~a~IPL~~L~~-Ge~vd~Wl~Ll~~~~k  162 (868)
T PLN03008         89 TLARTRVLKN-SQEPLWDEKFNISIAHPFAYLEFQV----KDDDVFGAQIIGTAKIPVRDIAS-GERISGWFPVLGASGK  162 (868)
T ss_pred             ceeeEEeCCC-CCCCCcceeEEEEecCCCceEEEEE----EcCCccCCceeEEEEEEHHHcCC-CCceEEEEEccccCCC
Confidence            5779999987 6999999999999998555555544    99998988999999999999997 5778899999755433


Q ss_pred             C-CCCcEEEEEEEEEccCC
Q 014112          170 H-SPAGFVQLSLAYAGASP  187 (430)
Q Consensus       170 ~-~p~G~I~LsLsf~p~~p  187 (430)
                      + ++.|.|+|+|.|.|...
T Consensus       163 p~k~~~kl~v~lqf~pv~~  181 (868)
T PLN03008        163 PPKAETAIFIDMKFTPFDQ  181 (868)
T ss_pred             CCCCCcEEEEEEEEEEccc
Confidence            3 34689999999999643

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=5.3e-17  Score=144.05  Aligned_cols=99  Identities=20%  Similarity=0.303  Sum_probs=82.5

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~  134 (430)
                      +.|.|+|++||+|++.+.   .||||+|.+.+   ++.+|+++++  .||+|||+|.|.+...+..|.++|    +|++.
T Consensus         2 ~~L~V~Vv~Ar~L~~~~~---~dPYV~Ik~g~---~k~kT~v~~~--~nP~WnE~F~F~~~~~~~~L~v~V----~dkd~   69 (127)
T cd08394           2 SLLCVLVKKAKLDGAPDK---FNTYVTLKVQN---VKSTTIAVRG--SQPCWEQDFMFEINRLDLGLVIEL----WNKGL   69 (127)
T ss_pred             ceEEEEEEEeeCCCCCCC---CCCeEEEEECC---EEeEeeECCC--CCCceeeEEEEEEcCCCCEEEEEE----EeCCC
Confidence            689999999999987663   48999999965   6889999864  699999999999987555566666    78887


Q ss_pred             ccCceeEEEEEeCccccccCce-eeEEEEccC
Q 014112          135 LEDQLLGFTLVPLSEVLVKNGK-LEKEFSLSS  165 (430)
Q Consensus       135 v~DdlIG~a~VPLsdLl~~~~~-l~~~f~Lss  165 (430)
                      +.|++||.+.|||.++..+... ..+||+|..
T Consensus        70 ~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          70 IWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             cCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence            8999999999999999975333 258999963

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.71  E-value=6.3e-17  Score=147.33  Aligned_cols=117  Identities=24%  Similarity=0.347  Sum_probs=93.6

Q ss_pred             Cccccchh---hh--ccCCCCccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC----------------------
Q 014112           36 GTEANRKE---AV--MSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP----------------------   88 (430)
Q Consensus        36 ~~~~~~~~---~~--~~~~~~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p----------------------   88 (430)
                      +|+++-++   +.  +... +.+.+.|+|+|++|+||.+.+..|.+||||+|.+.+..                      
T Consensus         5 ~~~~~~~~~~~~~~~~~~~-~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (153)
T cd08676           5 AFGVSPEEHEALLERVREA-EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD   83 (153)
T ss_pred             hhCCCHHHHHHHHHHHHhc-CCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccc
Confidence            56777666   32  3444 67899999999999999999999999999999996431                      


Q ss_pred             ----CCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEc
Q 014112           89 ----ENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus        89 ----~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                          ...++|+++++ +.||+|||+|.|.+... ...|.++|    +|.+   |++||.+.++|.++.. .+ .+.||+|
T Consensus        84 ~~~~~~~~kT~v~~~-tlnP~WnE~F~f~v~~~~~~~L~i~V----~D~d---d~~IG~v~i~l~~l~~-~~-~d~W~~L  153 (153)
T cd08676          84 TVPAKSIKVTEVKPQ-TLNPVWNETFRFEVEDVSNDQLHLDI----WDHD---DDFLGCVNIPLKDLPS-CG-LDSWFKL  153 (153)
T ss_pred             cccccccEecceecC-CCCCccccEEEEEeccCCCCEEEEEE----EecC---CCeEEEEEEEHHHhCC-CC-CCCeEeC
Confidence                12479999887 79999999999999763 33455555    7766   8999999999999984 33 5899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.71  E-value=1.3e-16  Score=140.23  Aligned_cols=119  Identities=18%  Similarity=0.274  Sum_probs=93.6

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC----------CCceEEEE
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV----------ESSLKCEI  125 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~----------d~~LkleV  125 (430)
                      .|+|+|++|++|+..+..|..||||+|.+.+   .++||+++++ +.||+|||+|.|.+...          ...|.++|
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V   77 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN---QSQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL   77 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECC---eeeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence            6999999999999999999999999999964   6889999987 79999999999985431          12344544


Q ss_pred             EEEEeecccc-cCceeEEEEE-eCcccccc--CceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112          126 FMMSRVKNYL-EDQLLGFTLV-PLSEVLVK--NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       126 ~v~v~Ded~v-~DdlIG~a~V-PLsdLl~~--~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~  185 (430)
                          +|++.. +|++||++.+ |+..+...  .....+||+|....   ..+|+|.|++++.+.
T Consensus        78 ----~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~---~~~Geil~~~~~~~~  134 (135)
T cd04017          78 ----FDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGG---QSAGELLAAFELIEV  134 (135)
T ss_pred             ----EeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCC---CchhheeEEeEEEEe
Confidence                777776 6899999986 66555431  23456899997432   469999999999764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.71  E-value=1.6e-16  Score=134.45  Aligned_cols=114  Identities=19%  Similarity=0.269  Sum_probs=85.0

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEEEEEEEeecccc
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCEIFMMSRVKNYL  135 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~LkleV~v~v~Ded~v  135 (430)
                      |+|+|++|+||+..   +.+||||++++.+.  ..++|+++++  .||+|||+|.|.+...+. ...+  .+.+++.+..
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~--~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l--~i~v~d~~~~   72 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQV--EVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTL--SFYNKDKRSK   72 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCE--EeEecceEEC--CCCcccceEEEecCCccccEEEE--EEEEEecccC
Confidence            88999999999986   78999999999652  4679999875  999999999999987432 2233  3344666655


Q ss_pred             -cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                       .+..+  +.++|..+.. ++..+.||+|...+......|+|+|.+.|
T Consensus        73 ~~~~~~--g~v~l~~~~~-~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          73 DRDIVI--GKVALSKLDL-GQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             CCeeEE--EEEEecCcCC-CCcceeEEECccCCCCCCcCceEEEEEEC
Confidence             34444  5566666665 46678999997554333458999999987

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.71  E-value=8.8e-17  Score=137.69  Aligned_cols=103  Identities=21%  Similarity=0.266  Sum_probs=83.4

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFM  127 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v  127 (430)
                      .+.|+|+|++|+||+..+..+..||||+|++.+..  ..++||+++++ +.||+|||+|.|.+...    ...|.++|  
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l~~~~l~~~V--   91 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETLKERTLEVTV--   91 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHhCCCEEEEEE--
Confidence            47899999999999999988999999999997643  25789999987 79999999999986442    23455555  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                        +|.+.+ +|++||.+.++|.+...  .....||+|
T Consensus        92 --~d~~~~~~~~~iG~~~i~l~~~~~--~~~~~W~~L  124 (125)
T cd04031          92 --WDYDRDGENDFLGEVVIDLADALL--DDEPHWYPL  124 (125)
T ss_pred             --EeCCCCCCCcEeeEEEEecccccc--cCCcceEEC
Confidence              887776 69999999999999443  223589988

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.70  E-value=1.4e-16  Score=136.39  Aligned_cols=106  Identities=19%  Similarity=0.260  Sum_probs=87.8

Q ss_pred             cceEEEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMM  128 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~  128 (430)
                      ..+.|+|+|++|+||+..+ ..+..||||+|++.+......+|+++++ +.||+|||+|.|.+...   ...|+++|   
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~~~~l~i~v---   87 (123)
T cd08390          12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQRRTLRLSV---   87 (123)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhcccEEEEEE---
Confidence            4578999999999999998 6889999999999755456789999987 79999999999998763   22455544   


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                       +|.+.. ++++||.+.++|.++.. ......|++|.
T Consensus        88 -~d~~~~~~~~~iG~~~i~L~~l~~-~~~~~~w~~L~  122 (123)
T cd08390          88 -YDVDRFSRHCIIGHVLFPLKDLDL-VKGGVVWRDLE  122 (123)
T ss_pred             -EECCcCCCCcEEEEEEEeccceec-CCCceEEEeCC
Confidence             777766 69999999999999997 45567899983

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.70  E-value=3.8e-16  Score=133.80  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=93.5

Q ss_pred             eEEEEEEEeccCCCCCC--CCCCCCcEEEEEEeCCC---CCeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEEEEEE
Q 014112           55 GVLEVYIHQARDIHNIC--IYHKQDVYAKLCLTSDP---ENTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCEIFMM  128 (430)
Q Consensus        55 g~L~VtVisArnLkn~d--i~gk~DPYVkVsL~~~p---~~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~LkleV~v~  128 (430)
                      ..|+|+|++|+||+..+  ..+..||||++++.+.+   ..++||+++.+++.||+|||+|.|.+...+. .|+++|   
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V---   78 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVV---   78 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEE---
Confidence            47999999999999888  67899999999997653   3679999998866699999999999886432 344444   


Q ss_pred             EeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          129 SRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       129 v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                       +|++..+|++||.+.++|.++..+    .++++|..........|.|.+.+++
T Consensus        79 -~d~~~~~~~~iG~~~~~l~~l~~g----~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          79 -YDEDSGDDDFLGQACLPLDSLRQG----YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             -EeCCCCCCcEeEEEEEEhHHhcCc----eEEEEecCCCCCCCcceeEEEEEEE
Confidence             777766899999999999999652    3678886433222346888887765

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.70  E-value=3.1e-16  Score=140.13  Aligned_cols=118  Identities=19%  Similarity=0.324  Sum_probs=93.6

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC----------CeEEeeeecCCCCCCee-cceEEEEeCcCCCceEEE
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE----------NTVSTNIINGGGRNPVF-NENLKLNVKTVESSLKCE  124 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~----------~k~KTkVikngG~NPvW-NEtF~F~V~~~d~~Lkle  124 (430)
                      ...|++++|+||+ .+++|++||||++++.+...          +++||+++++ +.||+| ||+|.|.+.. ...|.++
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~-~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP-TDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC-CCEEEEE
Confidence            4689999999998 78899999999999975442          3799999987 799999 9999999965 3456666


Q ss_pred             EEEEEeecccc----cCceeEEEEEeCccccccC--ceeeEEEEccCCCCCCCCCcEEEEEE
Q 014112          125 IFMMSRVKNYL----EDQLLGFTLVPLSEVLVKN--GKLEKEFSLSSTDLFHSPAGFVQLSL  180 (430)
Q Consensus       125 V~v~v~Ded~v----~DdlIG~a~VPLsdLl~~~--~~l~~~f~Lss~dl~~~p~G~I~LsL  180 (430)
                      |    +|++..    .|++||.+.|||.++..+.  +....||+|..+..+..-+|.|.|.+
T Consensus        79 V----~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 V----KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             E----EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            6    565432    3799999999999998742  23557999986665556788888865

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.69  E-value=1e-16  Score=137.13  Aligned_cols=91  Identities=20%  Similarity=0.250  Sum_probs=75.9

Q ss_pred             eEEEEEEEeccCCCCCCCC----CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCC--ceEEEEEEE
Q 014112           55 GVLEVYIHQARDIHNICIY----HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES--SLKCEIFMM  128 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~----gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~--~LkleV~v~  128 (430)
                      |.|.|+|++|++|+..+..    +..||||+|++..   +++||+++++ +.||+|||+|.|.|...+.  .|.++    
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~---~~~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~~~----   72 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR---RVFRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQFK----   72 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC---EeEeeeeecC-CCCCcccceEEEEEeCccCCCEEEEE----
Confidence            6899999999999987653    3589999999954   6889999998 6999999999999876332  34444    


Q ss_pred             Eeecccc-cCceeEEEEEeCcccccc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVK  153 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~  153 (430)
                      ++|++.+ .|++||.+.++|.+|+.+
T Consensus        73 V~D~d~~~~dd~IG~~~l~L~~l~~~   98 (108)
T cd04039          73 VLDKDKFSFNDYVATGSLSVQELLNA   98 (108)
T ss_pred             EEECCCCCCCcceEEEEEEHHHHHhh
Confidence            4888876 799999999999999974

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.69  E-value=1.5e-16  Score=135.50  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=84.6

Q ss_pred             CCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeecccccCceeEEEEEeCc
Q 014112           70 ICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNYLEDQLLGFTLVPLS  148 (430)
Q Consensus        70 ~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~v~DdlIG~a~VPLs  148 (430)
                      ..+.|++||||+|++.+.  ...+|+++++ +.||+|||+|.|.|.+. ...|.++|    +|++.++|++||.+.++|+
T Consensus         7 ~~~~G~~dPYv~v~v~~~--~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v----~d~~~~~d~~iG~~~v~L~   79 (111)
T cd04052           7 ESKTGLLSPYAELYLNGK--LVYTTRVKKK-TNNPSWNASTEFLVTDRRKSRVTVVV----KDDRDRHDPVLGSVSISLN   79 (111)
T ss_pred             cccCCCCCceEEEEECCE--EEEEEeeecc-CCCCccCCceEEEecCcCCCEEEEEE----EECCCCCCCeEEEEEecHH
Confidence            456789999999999652  4679999887 79999999999999873 34455555    7777668999999999999


Q ss_pred             cccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112          149 EVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       149 dLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~  185 (430)
                      ++...++....||+|..     .++|+|+|++.|.|.
T Consensus        80 ~l~~~~~~~~~w~~L~~-----~~~G~i~~~~~~~p~  111 (111)
T cd04052          80 DLIDATSVGQQWFPLSG-----NGQGRIRISALWKPV  111 (111)
T ss_pred             HHHhhhhccceeEECCC-----CCCCEEEEEEEEecC
Confidence            99764455679999963     478999999999984

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.69  E-value=2.5e-16  Score=133.24  Aligned_cols=111  Identities=26%  Similarity=0.333  Sum_probs=90.0

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEeecccc
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRVKNYL  135 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~Ded~v  135 (430)
                      |+|+|++|++|+..+..+.+||||+|.+.+.  ..++|+++.+ +.||+|||+|.|.+.. ....+.++|    +|.+..
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~--~~~~T~v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v----~d~~~~   73 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGE--KVFKTKTIKK-TLNPVWNESFEVPVPSRVRAVLKVEV----YDWDRG   73 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCC--cceeeceecC-CCCCcccccEEEEeccCCCCEEEEEE----EeCCCC
Confidence            6899999999999998899999999999653  5689999887 7999999999999986 344555555    777766


Q ss_pred             -cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEE
Q 014112          136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQ  177 (430)
Q Consensus       136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~  177 (430)
                       .|++||.+.++|.++.. +.....|++|....  +...|++-
T Consensus        74 ~~~~~iG~~~~~l~~l~~-~~~~~~~~~L~~~g--~~~~~~~~  113 (115)
T cd04040          74 GKDDLLGSAYIDLSDLEP-EETTELTLPLDGQG--GGKLGAVF  113 (115)
T ss_pred             CCCCceEEEEEEHHHcCC-CCcEEEEEECcCCC--CccCceEE
Confidence             69999999999999987 46677899996432  23456554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.68  E-value=3e-16  Score=136.09  Aligned_cols=102  Identities=24%  Similarity=0.311  Sum_probs=86.8

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~  134 (430)
                      |.|+|+|++|++|++.+.++.+||||+|++.+.  .+.+|+++++ +.||+|||+|.|.+......|.++|    +|++.
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~kT~~~~~-t~~P~Wne~f~~~v~~~~~~L~v~v----~d~~~   73 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGI--VKGRTVTISN-TLNPVWDEVLYVPVTSPNQKITLEV----MDYEK   73 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCE--EeeceeEECC-CcCCccCceEEEEecCCCCEEEEEE----EECCC
Confidence            689999999999999999999999999999643  5789999876 7999999999999987655666665    77776


Q ss_pred             c-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      . .|++||.+.++|.++..+  ..+.||.|..
T Consensus        74 ~~~d~~IG~~~~~l~~l~~~--~~~~~~~~~~  103 (120)
T cd04045          74 VGKDRSLGSVEINVSDLIKK--NEDGKYVEYD  103 (120)
T ss_pred             CCCCCeeeEEEEeHHHhhCC--CCCceEEecC
Confidence            6 689999999999999963  5578888853

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.68  E-value=3e-16  Score=133.08  Aligned_cols=99  Identities=20%  Similarity=0.196  Sum_probs=81.1

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC-----CceEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE-----SSLKCEIFMM  128 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d-----~~LkleV~v~  128 (430)
                      -+.|+|+|++|++|+    .+..||||++++.+   ++++|+++++ +.||+|||+|.|.+....     ..|.++|   
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~---~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V---   71 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGG---QKKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISV---   71 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECC---EeeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEE---
Confidence            378999999999999    57899999999985   5789999886 699999999999986422     2344444   


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccC--ceeeEEEEcc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKN--GKLEKEFSLS  164 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~--~~l~~~f~Ls  164 (430)
                       +|++.+ +|++||.+.++|+++..+.  +...+||+|.
T Consensus        72 -~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~  109 (111)
T cd04011          72 -YDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT  109 (111)
T ss_pred             -EcCcccccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence             888776 6999999999999998642  3467899985

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.68  E-value=1.9e-16  Score=143.82  Aligned_cols=101  Identities=19%  Similarity=0.237  Sum_probs=81.8

Q ss_pred             EEEEEEEeccCCCCCCCCC--------------CCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc--CCC
Q 014112           56 VLEVYIHQARDIHNICIYH--------------KQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT--VES  119 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~g--------------k~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~--~d~  119 (430)
                      .|.|+|++|++|+.++..+              .+||||+|.+.+   ++.||+++++ +.||+|||+|.|++..  ...
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g---~~~kT~v~~~-t~nPvWNE~f~f~v~~p~~~~   76 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG---QKVKTSVKKN-SYNPEWNEQIVFPEMFPPLCE   76 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC---EeeecceEcC-CCCCCcceEEEEEeeCCCcCC
Confidence            4899999999999988554              689999999976   5789999997 6999999999999754  334


Q ss_pred             ceEEEEEEEEeecccc-cCceeEEEEEeCccccccCce------eeEEEEcc
Q 014112          120 SLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGK------LEKEFSLS  164 (430)
Q Consensus       120 ~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~------l~~~f~Ls  164 (430)
                      .|.++|    +|+|.. +|++||.+.++|.++...+..      ...|+.|.
T Consensus        77 ~l~~~v----~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~ly  124 (151)
T cd04018          77 RIKIQI----RDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLY  124 (151)
T ss_pred             EEEEEE----EECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEee
Confidence            555555    888877 899999999999999874321      24788874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.67  E-value=2.5e-16  Score=143.88  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=89.0

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEE
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCE  124 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~Lkle  124 (430)
                      ....|.|+|+|++|+||+..+..+..||||+|++....  ..++||+++++ +.||+|||+|.|.+...    +..|.++
T Consensus        23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l~~~~L~i~  101 (162)
T cd04020          23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDLSQACLELT  101 (162)
T ss_pred             CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence            34679999999999999999999999999999996542  35889999998 69999999999985431    2245555


Q ss_pred             EEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          125 IFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       125 V~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      |    +|.+.+ +|++||.+.++|.++.. .+....||.|..
T Consensus       102 V----~d~d~~~~d~~lG~v~i~l~~~~~-~~~~~~w~~~~~  138 (162)
T cd04020         102 V----WDHDKLSSNDFLGGVRLGLGTGKS-YGQAVDWMDSTG  138 (162)
T ss_pred             E----EeCCCCCCCceEEEEEEeCCcccc-CCCccccccCCh
Confidence            5    788877 59999999999999986 456678888853

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.66  E-value=1.7e-15  Score=137.31  Aligned_cols=123  Identities=16%  Similarity=0.229  Sum_probs=94.6

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      .....|.|.|++|++|+..+     ||||.|+|.+.  ...||+++.+ +.||.|||.|+|.+......+.+.|  + .+
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~--~vaRT~v~~~-~~nP~W~E~F~f~~~~~~~~l~v~v--~-k~   76 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKT--LYARTTSKLK-TDTLFWGEHFEFSNLPPVSVITVNL--Y-RE   76 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC-----CceEEEEECCE--EEEEEEEEcC-CCCCcceeeEEecCCCcccEEEEEE--E-Ec
Confidence            34578999999999998754     89999999763  4579999987 6999999999998665333344433  1 22


Q ss_pred             cccc----cCceeEEEEEeCccccccCceeeEEEEccCCCCCC--------CCCcEEEEEEEEEccC
Q 014112          132 KNYL----EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFH--------SPAGFVQLSLAYAGAS  186 (430)
Q Consensus       132 ed~v----~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~--------~p~G~I~LsLsf~p~~  186 (430)
                      .+..    +|++||.+.||+.+|.. +...++||+|......+        ...+.|++++.|.+..
T Consensus        77 ~~~~~~~~~~~~IG~V~Ip~~~l~~-~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          77 SDKKKKKDKSQLIGTVNIPVTDVSS-RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             cCccccccCCcEEEEEEEEHHHhcC-CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence            2222    58999999999999996 57789999997554332        3458999999999864

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.65  E-value=2.7e-15  Score=137.11  Aligned_cols=122  Identities=20%  Similarity=0.285  Sum_probs=92.6

Q ss_pred             EEEEEEeccC--CCCCCCCCCCCcEEEEEEe--CCCCCeEEeeeecCCCCCCeecceEEEEeCcCC---------CceEE
Q 014112           57 LEVYIHQARD--IHNICIYHKQDVYAKLCLT--SDPENTVSTNIINGGGRNPVFNENLKLNVKTVE---------SSLKC  123 (430)
Q Consensus        57 L~VtVisArn--Lkn~di~gk~DPYVkVsL~--~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d---------~~Lkl  123 (430)
                      ++++|+.|++  |+..+..+..||||++++.  +...++.||+++++ +.||+|||+|.|.|....         ..|.+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~   82 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGLKF   82 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence            4566666666  6677767789999999983  33457999999997 899999999999997642         23555


Q ss_pred             EEEEEEeecccc--cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          124 EIFMMSRVKNYL--EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       124 eV~v~v~Ded~v--~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      +|    +|++.+  .|++||.+.++|..+.. ......||+|..  ....-.|.|++.+......
T Consensus        83 ~V----~d~~~f~~~D~~iG~~~i~L~~l~~-~~~~~~~~~L~~--~~k~~Gg~l~v~ir~r~p~  140 (155)
T cd08690          83 EV----YHKGGFLRSDKLLGTAQVKLEPLET-KCEIHESVDLMD--GRKATGGKLEVKVRLREPL  140 (155)
T ss_pred             EE----EeCCCcccCCCeeEEEEEEcccccc-cCcceEEEEhhh--CCCCcCCEEEEEEEecCCC
Confidence            55    888764  59999999999999987 345567999852  2223578999999877644

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.1e-15  Score=159.10  Aligned_cols=144  Identities=22%  Similarity=0.214  Sum_probs=113.0

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK  132 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De  132 (430)
                      ....|.|+|++|++|+..+.-|..||||+++|.++...+++|++.++ +.||+|||+|+|.|...+. ...+|++.++|.
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l-~~~~L~l~V~~~  242 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEEL-SNRVLHLSVYDF  242 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHh-ccCEEEEEEEec
Confidence            45789999999999999995577999999999999888999999987 8999999999999876322 223355666998


Q ss_pred             ccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCC-CCCCcEEEEEEEEEccCCCcccCCCCCCccccccccccccc
Q 014112          133 NYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF-HSPAGFVQLSLAYAGASPDVMAIPAVPKPLAADETAQESEI  210 (430)
Q Consensus       133 d~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~-~~p~G~I~LsLsf~p~~p~~~~~~~~p~~~~tn~vl~~~~~  210 (430)
                      |.+ ++++||++.++|..+... .....|++|...... ....|+|.++|+|.|..+           .++..|+-++.+
T Consensus       243 drfsr~~~iGev~~~l~~~~~~-~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g-----------~ltv~v~kar~L  310 (421)
T KOG1028|consen  243 DRFSRHDFIGEVILPLGEVDLL-STTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG-----------RLTVVVIKARNL  310 (421)
T ss_pred             CCcccccEEEEEEecCcccccc-ccceeeeccccccCCcccccceEEEEEEeecCCC-----------eEEEEEEEecCC
Confidence            887 899999999999999874 445678888643111 122389999999999854           455556666654

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.65  E-value=8.4e-16  Score=138.51  Aligned_cols=91  Identities=27%  Similarity=0.407  Sum_probs=80.4

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecc
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKN  133 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded  133 (430)
                      .|.|+|+|++|+||+..+. +..||||++.+.+   +++||+++++ +.||+|||+|.|.+.+....+.++|    ||++
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~---~~~kT~vvk~-t~nP~WnE~f~f~i~~~~~~l~~~V----~D~d   71 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN---QKVKTRVIKK-NLNPVWNEELTLSVPNPMAPLKLEV----FDKD   71 (145)
T ss_pred             CeEEEEEEEeeECCCCCCC-CCcCcEEEEEECC---EEEEeeeEcC-CCCCeecccEEEEecCCCCEEEEEE----EECC
Confidence            4899999999999998887 8999999999965   6899999987 7999999999999988655666666    8888


Q ss_pred             cc-cCceeEEEEEeCcccccc
Q 014112          134 YL-EDQLLGFTLVPLSEVLVK  153 (430)
Q Consensus       134 ~v-~DdlIG~a~VPLsdLl~~  153 (430)
                      .+ .|++||.+.++|.++...
T Consensus        72 ~~~~dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          72 TFSKDDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             CCCCCCEEEEEEEEHHHhhhh
Confidence            77 699999999999999863

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.65  E-value=1.2e-15  Score=134.83  Aligned_cols=92  Identities=20%  Similarity=0.277  Sum_probs=77.1

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC--CCceEEEEEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV--ESSLKCEIFMMS  129 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~--d~~LkleV~v~v  129 (430)
                      ...+.|+|+|++|++|+. +.++..||||+|++.+   +++||+++++ +.||+|||+|.|.+...  ...|+++|    
T Consensus        25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~---~~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L~v~V----   95 (127)
T cd04032          25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG---QEKRTEVIWN-NNNPRWNATFDFGSVELSPGGKLRFEV----   95 (127)
T ss_pred             CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC---ccccCceecC-CCCCcCCCEEEEecccCCCCCEEEEEE----
Confidence            457999999999999984 7789999999999965   5899999987 69999999999975432  34566655    


Q ss_pred             eecccc-cCceeEEEEEeCccccc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~  152 (430)
                      +|++.+ .|++||.+.++|.....
T Consensus        96 ~D~d~~s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032          96 WDRDNGWDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             EeCCCCCCCCeeEEEEEEecCCce
Confidence            888877 79999999999996653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.64  E-value=1e-15  Score=134.35  Aligned_cols=95  Identities=21%  Similarity=0.247  Sum_probs=79.9

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC----CCeEEeeeecCCCCCCeecceEEEEeCcC-----CCceEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP----ENTVSTNIINGGGRNPVFNENLKLNVKTV-----ESSLKC  123 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p----~~k~KTkVikngG~NPvWNEtF~F~V~~~-----d~~Lkl  123 (430)
                      ..+.|+|+|++|++|+..+..+..||||+|.+.+..    ..++||+++++ +.||+|||+|.|.+...     ...|.+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~   92 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF   92 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence            457899999999999999989999999999997542    35889999987 69999999999998762     223444


Q ss_pred             EEEEEEeecccc-cCceeEEEEEeCccccc
Q 014112          124 EIFMMSRVKNYL-EDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       124 eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~  152 (430)
                      +    ++|++.+ +|++||.+.++|.++..
T Consensus        93 ~----V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          93 T----VKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             E----EEecCCCCCCcEeEEEEEeHHHCCc
Confidence            4    4888877 59999999999999985

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.63  E-value=1.7e-15  Score=134.54  Aligned_cols=103  Identities=22%  Similarity=0.314  Sum_probs=85.0

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCC-CCCeEEeeeecCCCCCCeecceEEEEeCcC----------------CC
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSD-PENTVSTNIINGGGRNPVFNENLKLNVKTV----------------ES  119 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~-p~~k~KTkVikngG~NPvWNEtF~F~V~~~----------------d~  119 (430)
                      |+|+|++|+||+.. ..+.+||||+|++.+. ...+++|+++++ +.||+|||+|.|.+...                ..
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccccccccccccccc
Confidence            68999999999988 7899999999999842 136899999997 79999999999998764                12


Q ss_pred             ceEEEEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCC
Q 014112          120 SLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSST  166 (430)
Q Consensus       120 ~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~  166 (430)
                      .|+++    ++|.+.. ++++||.+.++|.++.. .+....||+|...
T Consensus        79 ~l~i~----V~d~~~~~~~~~IG~~~i~l~~l~~-~~~~~~W~~L~~~  121 (137)
T cd08675          79 ELRVE----LWHASMVSGDDFLGEVRIPLQGLQQ-AGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEE----EEcCCcCcCCcEEEEEEEehhhccC-CCcccceEecCCc
Confidence            34444    4787776 79999999999999986 4667899999743

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.63  E-value=5e-15  Score=129.00  Aligned_cols=116  Identities=25%  Similarity=0.371  Sum_probs=89.3

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL  135 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v  135 (430)
                      .|+|+|++|+ |...+.++++||||+|++.+.  ...+|+++++ +.||+|||+|.|.+... ..|.++|    +|++.+
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~--~~~kT~v~~~-t~~P~Wne~f~~~~~~~-~~l~~~V----~d~~~~   73 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQ--PPKKTEVSKK-TSNPKWNEHFTVLVTPQ-STLEFKV----WSHHTL   73 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCc--ccEEeeeeCC-CCCCccccEEEEEeCCC-CEEEEEE----EeCCCC
Confidence            6999999999 555555899999999999753  4789999886 79999999999998753 4455555    888877


Q ss_pred             -cCceeEEEEEeCcccccc-Cce---eeEEEEccCCCC-CCCCCcEEEEEE
Q 014112          136 -EDQLLGFTLVPLSEVLVK-NGK---LEKEFSLSSTDL-FHSPAGFVQLSL  180 (430)
Q Consensus       136 -~DdlIG~a~VPLsdLl~~-~~~---l~~~f~Lss~dl-~~~p~G~I~LsL  180 (430)
                       .|++||.+.++|.++... ++.   ...|++|..... .....|.|.+++
T Consensus        74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence             799999999999999863 222   335888864331 123578888875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.62  E-value=1.8e-15  Score=134.87  Aligned_cols=103  Identities=18%  Similarity=0.219  Sum_probs=80.8

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCC--eEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPEN--TVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMM  128 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~--k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~  128 (430)
                      .+.|+|+|++|+||+..+..+..||||+|+|.++..+  +.||+++++ +.||+|||+|.|.|...   +..|+++|   
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l~~~~l~~~V---   89 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVLQDLSLRVTV---   89 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHhCCcEEEEEE---
Confidence            4689999999999999998899999999999876433  678999887 79999999999999862   22344444   


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                       +|.+.+ ++++||.+.|+...  . +...++|+.+.
T Consensus        90 -~~~d~~~~~~~iG~v~lg~~~--~-g~~~~hW~~ml  122 (136)
T cd08406          90 -AESTEDGKTPNVGHVIIGPAA--S-GMGLSHWNQML  122 (136)
T ss_pred             -EeCCCCCCCCeeEEEEECCCC--C-ChhHHHHHHHH
Confidence             777765 79999999998764  2 23345666553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.62  E-value=9.8e-16  Score=133.43  Aligned_cols=104  Identities=18%  Similarity=0.203  Sum_probs=84.1

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v  127 (430)
                      ..+.|.|+|++|+||+..+..+..||||+|.+.++.  ..+.||+++++ +.||+|||+|.|.+...+   ..|.++|  
T Consensus        11 ~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l~~~~l~~~V--   87 (133)
T cd08384          11 QRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDLAKKTLEITV--   87 (133)
T ss_pred             CCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHhCCCEEEEEE--
Confidence            358999999999999999999999999999997643  24789999987 799999999999987632   2455555  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                        +|.+.. .|++||.+.++|..  . +....+||.+.
T Consensus        88 --~d~d~~~~~~~lG~~~i~l~~--~-~~~~~~W~~~l  120 (133)
T cd08384          88 --WDKDIGKSNDYIGGLQLGINA--K-GERLRHWLDCL  120 (133)
T ss_pred             --EeCCCCCCccEEEEEEEecCC--C-CchHHHHHHHH
Confidence              788766 69999999999985  2 34456788774

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.62  E-value=4.2e-15  Score=130.36  Aligned_cols=105  Identities=18%  Similarity=0.239  Sum_probs=82.7

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIF  126 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~  126 (430)
                      ...+.|+|+|++|++|+..+..+..||||+|.+.+..  ..+++|+++++ +.||+|||+|.|.+...+   ..|.++| 
T Consensus        12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~~~l~~~v-   89 (136)
T cd08402          12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQIQKVHLIVTV-   89 (136)
T ss_pred             CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHhCCCEEEEEE-
Confidence            3468999999999999999999999999999996533  24678998876 799999999999987522   1344444 


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                         +|++.+ .|++||.+.|++...   +....+|+.+.
T Consensus        90 ---~d~~~~~~~~~iG~~~i~~~~~---~~~~~~W~~~~  122 (136)
T cd08402          90 ---LDYDRIGKNDPIGKVVLGCNAT---GAELRHWSDML  122 (136)
T ss_pred             ---EeCCCCCCCceeEEEEECCccC---ChHHHHHHHHH
Confidence               888876 689999999999753   23445677664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.61  E-value=3.6e-15  Score=133.57  Aligned_cols=102  Identities=20%  Similarity=0.198  Sum_probs=79.3

Q ss_pred             ceEEEEEEEeccCCCCCC--CCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEE
Q 014112           54 IGVLEVYIHQARDIHNIC--IYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIF  126 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~d--i~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~  126 (430)
                      .+.|+|+|++|+||+..+  ..+..||||+|+|.++..  .++||++.++ +.||+|||+|.|.|...   +..|.++| 
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L~~~~L~~~V-   91 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELLAASSVELEV-   91 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHhCccEEEEEE-
Confidence            578999999999999887  335599999999987642  4779999887 79999999999999872   22344444 


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                         +|.+.+ +|++||.+.+++..  . +...++|..+
T Consensus        92 ---~d~d~~~~~d~iG~v~lg~~~--~-g~~~~hW~~m  123 (138)
T cd08407          92 ---LNQDSPGQSLPLGRCSLGLHT--S-GTERQHWEEM  123 (138)
T ss_pred             ---EeCCCCcCcceeceEEecCcC--C-CcHHHHHHHH
Confidence               788777 79999999999974  2 3334455554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.60  E-value=5.2e-15  Score=127.25  Aligned_cols=94  Identities=23%  Similarity=0.344  Sum_probs=77.6

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEE-eCcC---CCceEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLN-VKTV---ESSLKCEIFM  127 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~-V~~~---d~~LkleV~v  127 (430)
                      .+.|+|+|++|++|++.+..+..||||++.+.+..  ..+.||+++++ +.||+|||+|.|. +...   ...+.++|  
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~~~~~l~~~v--   90 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDIQRKTLRLLV--   90 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHhCCCEEEEEE--
Confidence            47899999999999999999999999999996543  35789999987 6999999999996 3321   23455555  


Q ss_pred             EEeecccccCceeEEEEEeCccccc
Q 014112          128 MSRVKNYLEDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       128 ~v~Ded~v~DdlIG~a~VPLsdLl~  152 (430)
                        +|++.+++++||.+.++|++|..
T Consensus        91 --~d~~~~~~~~iG~~~i~l~~l~~  113 (123)
T cd04035          91 --LDEDRFGNDFLGETRIPLKKLKP  113 (123)
T ss_pred             --EEcCCcCCeeEEEEEEEcccCCC
Confidence              77776689999999999999996

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.60  E-value=1.3e-15  Score=134.93  Aligned_cols=104  Identities=22%  Similarity=0.332  Sum_probs=81.3

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC--C-CceEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV--E-SSLKCEIFMM  128 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~--d-~~LkleV~v~  128 (430)
                      .+.|+|+|++|+||...+ .+.+||||+|+|.+...  .++||+++++ +.||+|||+|.|.|...  . ..|.++|   
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l~~~~L~~~V---   88 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQLDTASLSLSV---   88 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHhCccEEEEEE---
Confidence            478999999999999988 88899999999986532  4779999876 79999999999999752  2 2344444   


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                       ++.+.+ ++++||.+.|+...... +...++|+.+.
T Consensus        89 -~~~~~~~~~~~lG~v~ig~~~~~~-~~~~~hW~~~~  123 (137)
T cd08409          89 -MQSGGVRKSKLLGRVVLGPFMYAR-GKELEHWNDML  123 (137)
T ss_pred             -EeCCCCCCcceEEEEEECCcccCC-ChHHHHHHHHH
Confidence             777755 79999999999765554 34455676664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.60  E-value=1.1e-14  Score=127.92  Aligned_cols=97  Identities=20%  Similarity=0.296  Sum_probs=73.1

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec--
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK--  132 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De--  132 (430)
                      |+|+|++|+||+     +..||||+|.+.+..  ..++|||++++ +.||+|||+|.|.|.. ...|++.|    +|.  
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~-s~~L~~~v----~d~~~   69 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG-SQTLRILC----YEKCY   69 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC-CCEEEEEE----EEccc
Confidence            789999999996     458999999997643  35799999987 7999999999999985 34566655    554  


Q ss_pred             -----ccc-cCceeEEEEEeCccccc-cCceeeEEEEcc
Q 014112          133 -----NYL-EDQLLGFTLVPLSEVLV-KNGKLEKEFSLS  164 (430)
Q Consensus       133 -----d~v-~DdlIG~a~VPLsdLl~-~~~~l~~~f~Ls  164 (430)
                           |.+ .|++||.+.+.|.-=.. ..+..+..+.|.
T Consensus        70 ~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~  108 (118)
T cd08686          70 SKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN  108 (118)
T ss_pred             ccccccccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence                 344 69999888887753222 245556667773

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.59  E-value=3.3e-15  Score=176.37  Aligned_cols=119  Identities=18%  Similarity=0.360  Sum_probs=101.7

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC--CceEEEEEEEEe
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE--SSLKCEIFMMSR  130 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d--~~LkleV~v~v~  130 (430)
                      ..|.|.|+|++|+||.  +.+|++||||+|.++..  .+.|||++++ ++||+|||.|+|.+..+.  ..++++|    |
T Consensus      1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~--~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~~~~l~iev----~ 2048 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG--PPRQTKVVSH-SSSPEWKEGFTWAFDSPPKGQKLHISC----K 2048 (2102)
T ss_pred             CCcceEEEEeeccccc--cccCCCCCeEEEEECCC--CcccccccCC-CCCCCcccceeeeecCCCCCCceEEEE----E
Confidence            4799999999999999  56899999999999854  4779999998 699999999998887743  4577776    8


Q ss_pred             ecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcE---EEEEEEEEc
Q 014112          131 VKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGF---VQLSLAYAG  184 (430)
Q Consensus       131 Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~---I~LsLsf~p  184 (430)
                      |+|.++++.+|.+.|+|.++.. ++....||+|...   +++.|.   |++++.|.+
T Consensus      2049 d~d~f~kd~~G~~~i~l~~vv~-~~~~~~~~~L~~~---~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2049 SKNTFGKSSLGKVTIQIDRVVM-EGTYSGEYSLNPE---SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             ecCccCCCCCceEEEEHHHHhc-CceeeeeeecCcc---cccCCCcceEEEEEEecC
Confidence            9998887899999999999997 6899999999732   235777   999999975

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.59  E-value=1.4e-15  Score=131.23  Aligned_cols=104  Identities=22%  Similarity=0.273  Sum_probs=85.3

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFMM  128 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v~  128 (430)
                      .+.|+|+|++|+||+..+..+..||||++.+.+...  .+++|+++++ +.||+|||+|.|.+...+   ..|.++|   
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l~~~~l~~~v---   88 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQLEEVSLVITV---   88 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHhCCcEEEEEE---
Confidence            478999999999999999899999999999976532  3679999987 699999999999998732   3455554   


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                       +|.+.. ++++||.+.++|.+  . +...++||.|..
T Consensus        89 -~d~~~~~~~~~lG~~~i~l~~--~-~~~~~~W~~l~~  122 (134)
T cd00276          89 -VDKDSVGRNEVIGQVVLGPDS--G-GEELEHWNEMLA  122 (134)
T ss_pred             -EecCCCCCCceeEEEEECCCC--C-CcHHHHHHHHHh
Confidence             787765 79999999999999  3 345678998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.59  E-value=6.6e-15  Score=131.14  Aligned_cols=106  Identities=20%  Similarity=0.300  Sum_probs=82.0

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEI  125 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV  125 (430)
                      ...+.|.|+|++|+||+..+..+..||||+++|.+...   .++||+++++ +.||+|||+|.|.|...+   ..|.+. 
T Consensus        12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l~~~~L~~~-   89 (138)
T cd08408          12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQLSEVTLMFS-   89 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHhCccEEEEE-
Confidence            34689999999999999999999999999999976432   3679999986 799999999999998622   234444 


Q ss_pred             EEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          126 FMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       126 ~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                         +++.+.+ ++++||.+.+++...-.  ...++|+.+.
T Consensus        90 ---V~~~~~~~~~~~iG~v~l~~~~~~~--~~~~hW~~~l  124 (138)
T cd08408          90 ---VYNKRKMKRKEMIGWFSLGLNSSGE--EEEEHWNEMK  124 (138)
T ss_pred             ---EEECCCCCCCcEEEEEEECCcCCCc--hHHHHHHHHH
Confidence               4777656 79999999999874432  2334666653

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.59  E-value=6.8e-15  Score=129.02  Aligned_cols=104  Identities=24%  Similarity=0.269  Sum_probs=81.9

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCC--CCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSD--PENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~--p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v  127 (430)
                      ..+.|+|+|++|+||+..+..++.||||+|.+.+.  ...+.||+++++ +.||+|||+|.|.+...   +..|.++|  
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~~~~~l~~~v--   89 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERLRETTLIITV--   89 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHhCCCEEEEEE--
Confidence            35789999999999999999999999999999542  224679999987 79999999999998742   22445544  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                        +|.+.+ .|++||.+.|++.+.   +...++|+.+.
T Consensus        90 --~d~~~~~~~~~lG~~~i~~~~~---~~~~~~w~~~~  122 (136)
T cd08405          90 --MDKDRLSRNDLIGKIYLGWKSG---GLELKHWKDML  122 (136)
T ss_pred             --EECCCCCCCcEeEEEEECCccC---CchHHHHHHHH
Confidence              888777 699999999999876   23345666664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.59  E-value=9e-15  Score=127.08  Aligned_cols=104  Identities=24%  Similarity=0.343  Sum_probs=86.7

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC--CCceEEEEEEEEe
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV--ESSLKCEIFMMSR  130 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~--d~~LkleV~v~v~  130 (430)
                      +.|+|+|++|+||+..+..+..||||+|.+.+.+  ...+||+++++ +.||.|||+|.|.+...  ...|.++|    +
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~~~~~l~v~v----~   87 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPADKDRRLSIEV----W   87 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchhcCCEEEEEE----E
Confidence            8899999999999998888999999999997543  35889999987 69999999999998763  23455554    7


Q ss_pred             ecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      |++.+ .|++||.+.++|.++..  .....||.|..
T Consensus        88 d~~~~~~~~~iG~~~~~l~~l~~--~~~~~w~~L~~  121 (131)
T cd04026          88 DWDRTTRNDFMGSLSFGVSELIK--MPVDGWYKLLN  121 (131)
T ss_pred             ECCCCCCcceeEEEEEeHHHhCc--CccCceEECcC
Confidence            77766 79999999999999985  25678999964

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.59  E-value=8e-15  Score=128.26  Aligned_cols=105  Identities=22%  Similarity=0.240  Sum_probs=81.7

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIF  126 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~  126 (430)
                      ...+.|+|+|++|++|+..+..+..||||+|.+.+..  ..+.+|+++++ +.||+|||+|.|.+....   ..|.++| 
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~~~~~~l~~~v-   88 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPENVDNVSLIIAV-   88 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHHhCCCEEEEEE-
Confidence            3468999999999999999999999999999996532  24779998776 799999999999987521   1344444 


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                         +|++.+ .|++||.+.|++...   +...+.|+.+.
T Consensus        89 ---~d~~~~~~~~~IG~~~l~~~~~---~~~~~~w~~~~  121 (134)
T cd08403          89 ---VDYDRVGHNELIGVCRVGPNAD---GQGREHWNEML  121 (134)
T ss_pred             ---EECCCCCCCceeEEEEECCCCC---CchHHHHHHHH
Confidence               888877 699999999998722   22235666664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.58  E-value=9.1e-15  Score=128.40  Aligned_cols=104  Identities=16%  Similarity=0.212  Sum_probs=83.1

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v  127 (430)
                      ..+.|.|+|++|+||+..+..+..||||+|.+.+...  .+.||+++++ +.||+|||+|.|.+...   ...|.++|  
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~~~~~l~~~v--   89 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEELEDISVEFLV--   89 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHhCCCEEEEEE--
Confidence            3578999999999999999999999999999976432  3678999887 79999999999999752   22344444  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                        +|.+.+ ++++||.+.+++.. .  +....+|+.|.
T Consensus        90 --~d~d~~~~~~~iG~~~~~~~~-~--~~~~~~w~~l~  122 (136)
T cd08404          90 --LDSDRVTKNEVIGRLVLGPKA-S--GSGGHHWKEVC  122 (136)
T ss_pred             --EECCCCCCCccEEEEEECCcC-C--CchHHHHHHHH
Confidence              888877 69999999999998 3  23356777774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.58  E-value=9.2e-15  Score=125.61  Aligned_cols=99  Identities=16%  Similarity=0.231  Sum_probs=79.5

Q ss_pred             EEEeccCCCCCCCCCCCCcEEEEEEeCCC----CCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEeeccc
Q 014112           60 YIHQARDIHNICIYHKQDVYAKLCLTSDP----ENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        60 tVisArnLkn~di~gk~DPYVkVsL~~~p----~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~Ded~  134 (430)
                      -.|+|++|++.+.++++||||+|++.+..    ...+||+++++ +.||+|||+|.|.+.. ....|+++|    +|.+.
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~~~l~~~V----~d~d~   79 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEVQKLRFEV----YDVDS   79 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEeeeEEEEEE----EEecC
Confidence            45899999999999999999999998753    12589999998 7999999999998653 223455555    66664


Q ss_pred             ----c-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          135 ----L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       135 ----v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                          + +|++||.+.++|.+|.. +.....+|+|.
T Consensus        80 ~~~~~~~~d~iG~~~i~l~~l~~-~~~~~~~~~l~  113 (120)
T cd04048          80 KSKDLSDHDFLGEAECTLGEIVS-SPGQKLTLPLK  113 (120)
T ss_pred             CcCCCCCCcEEEEEEEEHHHHhc-CCCcEEEEEcc
Confidence                4 79999999999999997 45556788883

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.57  E-value=1.3e-14  Score=127.92  Aligned_cols=104  Identities=19%  Similarity=0.232  Sum_probs=79.9

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC--C-CceEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV--E-SSLKCEIFMM  128 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~--d-~~LkleV~v~  128 (430)
                      .+.|+|+|++|+||+..+..+..||||+|++.+..  ..+++|+++++ +.||+|||+|.|.|...  . ..|.++|   
T Consensus        13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l~~~~l~~~V---   88 (135)
T cd08410          13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEELENVSLVFTV---   88 (135)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHhCCCEEEEEE---
Confidence            47899999999999999999999999999985432  24689999887 79999999999999652  1 1344444   


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                       +|++.. +|++||.+.|....+-  +...++|+.+.
T Consensus        89 -~d~d~~~~~~~iG~~~l~~~~~~--~~~~~~W~~l~  122 (135)
T cd08410          89 -YGHNVKSSNDFIGRIVIGQYSSG--PSETNHWRRML  122 (135)
T ss_pred             -EeCCCCCCCcEEEEEEEcCccCC--chHHHHHHHHH
Confidence             788766 7999999986653332  22346677664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.57  E-value=1.9e-14  Score=128.98  Aligned_cols=108  Identities=10%  Similarity=0.130  Sum_probs=83.2

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMS  129 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v  129 (430)
                      ...+.|+|+|++|+||+.....+..||||+|+|...+.  .++||++.++...||+|||+|.|+|+..+  +.+.+.+.+
T Consensus        11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~--~~v~l~v~v   88 (135)
T cd08692          11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE--HGIQFLIKL   88 (135)
T ss_pred             CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh--heeEEEEEE
Confidence            34688999999999999876566779999999997654  48899998874357999999999999743  234455566


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                      +|.+.+ ++++||.+.++.....  +...++|...
T Consensus        89 ~d~~~~~~n~~IG~v~lG~~~~~--~~~~~hW~~m  121 (135)
T cd08692          89 YSRSSVRRKHFLGQVWISSDSSS--SEAVEQWKDT  121 (135)
T ss_pred             EeCCCCcCCceEEEEEECCccCC--chhhhhHHHH
Confidence            888776 7999999999998643  2234556544

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.57  E-value=1.6e-14  Score=125.69  Aligned_cols=118  Identities=25%  Similarity=0.289  Sum_probs=86.6

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~  134 (430)
                      .|+|+|++|++|++.+..++.||||+|++.+.. ...||+++++ +.||+|||+|.|.+... ...|.++|    +|++.
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~~V----~d~d~   74 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKK-INDRDNYIPN-TLNPVFGKMFELEATLPGNSILKISV----MDYDL   74 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCee-ccceeeEEEC-CCCCccceEEEEEecCCCCCEEEEEE----EECCC
Confidence            489999999999999999999999999996532 3468888887 79999999999998653 33556655    78887


Q ss_pred             c-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          135 L-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       135 v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      + .|++||.+.++|.+....  ....+.-+..   .....|.++.+.++.|
T Consensus        75 ~~~dd~iG~~~i~l~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~  120 (124)
T cd04037          75 LGSDDLIGETVIDLEDRFFS--KHRATCGLPP---TYEESGPNQWRDSLKP  120 (124)
T ss_pred             CCCCceeEEEEEeecccccc--hHHHhccCCC---cccccCceecCcccCc
Confidence            7 799999999999988752  1111222211   0124677776665544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02270 phospholipase D alpha

Probab=99.52  E-value=1e-13  Score=152.49  Aligned_cols=129  Identities=18%  Similarity=0.271  Sum_probs=105.4

Q ss_pred             cceEEEEEEEeccCCCCCCC------------------CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEe
Q 014112           53 FIGVLEVYIHQARDIHNICI------------------YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV  114 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di------------------~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V  114 (430)
                      .+|+|+|+|++|++|++.+.                  .+..||||.|.|..+  +..||+++.|...||+|||+|++++
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a--~v~rtr~~~~~~~~p~w~e~f~i~~   83 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKA--RVGRTRKIENEPKNPRWYESFHIYC   83 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCc--EEEEEeecCCCCCCCccccceEEee
Confidence            57999999999999997311                  135699999999775  7889999998667999999999999


Q ss_pred             CcCCCceEEEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCC-cEEEEEEEEEccCCC
Q 014112          115 KTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPA-GFVQLSLAYAGASPD  188 (430)
Q Consensus       115 ~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~-G~I~LsLsf~p~~p~  188 (430)
                      ......+.|    .++|.|.++.++||.+.||+.+|+. +..+++||++...+..+.+. -.|+++|+|.+...+
T Consensus        84 ah~~~~v~f----~vkd~~~~g~~~ig~~~~p~~~~~~-g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         84 AHMASNIIF----TVKDDNPIGATLIGRAYIPVEEILD-GEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             ccCcceEEE----EEecCCccCceEEEEEEEEHHHhcC-CCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence            986544444    4599999999999999999999997 57789999997655443333 499999999996543

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.49  E-value=1.4e-13  Score=107.79  Aligned_cols=83  Identities=27%  Similarity=0.415  Sum_probs=70.0

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEEEEEEEeecccc
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCEIFMMSRVKNYL  135 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~LkleV~v~v~Ded~v  135 (430)
                      |+|+|++|+||...+..+..||||++.+.+.....++|+++++ +.||.|||+|.|.+..... .|.++|    +|.+..
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~~V----~~~~~~   75 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSFEV----WDKDSF   75 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEEEE----EEETSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEEEE----EECCCC
Confidence            8999999999999888899999999999986545699999987 5999999999999776322 345544    888877


Q ss_pred             -cCceeEEEE
Q 014112          136 -EDQLLGFTL  144 (430)
Q Consensus       136 -~DdlIG~a~  144 (430)
                       .|++||.+.
T Consensus        76 ~~~~~iG~~~   85 (85)
T PF00168_consen   76 GKDELIGEVK   85 (85)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCCCEEEEEC
Confidence             499999874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.47  E-value=2.2e-13  Score=114.81  Aligned_cols=88  Identities=17%  Similarity=0.284  Sum_probs=72.1

Q ss_pred             EEEEeccCCCCCCCCCCCCcEEEEEEeCCC---CCeEEeeeecCCCCCCeecceEEEEeCcC-----CCceEEEEEEEEe
Q 014112           59 VYIHQARDIHNICIYHKQDVYAKLCLTSDP---ENTVSTNIINGGGRNPVFNENLKLNVKTV-----ESSLKCEIFMMSR  130 (430)
Q Consensus        59 VtVisArnLkn~di~gk~DPYVkVsL~~~p---~~k~KTkVikngG~NPvWNEtF~F~V~~~-----d~~LkleV~v~v~  130 (430)
                      +-.++|++|+..+.++++||||+|++.+..   ...+||+++++ +.||+|| +|.|.+...     ...|+++|    +
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V----~   77 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEV----Y   77 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEE----E
Confidence            456799999999999999999999997642   23689999997 6999999 788886542     23455555    7


Q ss_pred             ecccc-cCceeEEEEEeCccccc
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~  152 (430)
                      |++.+ +|++||.+.++|.+|..
T Consensus        78 d~d~~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          78 DYDSSGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             EeCCCCCCcEEEEEEEEHHHHhc
Confidence            88877 69999999999999985

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.35  E-value=4.5e-12  Score=142.29  Aligned_cols=144  Identities=19%  Similarity=0.252  Sum_probs=118.5

Q ss_pred             ccCccccchhhhccCCCCccceEEEEEEEeccCCCCCC--CCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEE
Q 014112           34 TKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNIC--IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLK  111 (430)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~g~L~VtVisArnLkn~d--i~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~  111 (430)
                      ..++++|-..+++++. ..++|+|.|+|.+|++|+..+  +.+..|||+.+...+.  ...|||+.++ ..||+|||+|+
T Consensus       416 Pnsl~idi~~~m~~~s-~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r--~~gkT~v~~n-t~nPvwNEt~Y  491 (1227)
T COG5038         416 PNSLTIDISQIMAGDS-GTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDR--VIGKTRVKKN-TLNPVWNETFY  491 (1227)
T ss_pred             CceEEEcHHHhhcccc-CCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccc--cCCccceeec-cCCccccceEE
Confidence            4678888877777775 889999999999999999988  6689999999996442  4569999998 89999999999


Q ss_pred             EEeCcCCCceEEEEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCCC
Q 014112          112 LNVKTVESSLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPD  188 (430)
Q Consensus       112 F~V~~~d~~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p~  188 (430)
                      +.|......|.++|    ||.+.. .|+++|.+.++|..|.......++.+.+...   ..+.|+|..++.|+|..++
T Consensus       492 i~lns~~d~L~Lsl----yD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~---~k~vGrL~yDl~ffp~~e~  562 (1227)
T COG5038         492 ILLNSFTDPLNLSL----YDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRN---TKNVGRLTYDLRFFPVIED  562 (1227)
T ss_pred             EEecccCCceeEEE----EeccccCCcceeeeEEechHHhhhccccccceeeeecc---CccceEEEEeeeeecccCC
Confidence            99999878888888    886655 7999999999999999743344456666422   2478999999999997653

>cd00030 C2 C2 domain

Probab=99.35  E-value=8.2e-12  Score=97.81  Aligned_cols=100  Identities=29%  Similarity=0.421  Sum_probs=80.5

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEeecccc
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRVKNYL  135 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~Ded~v  135 (430)
                      |.|+|++|++|.........+|||++.+..  ...++|+++.+ +.||.|||.|.|.+.. ....+.++|    ++.+..
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~--~~~~~T~~~~~-~~~P~w~~~~~~~~~~~~~~~l~i~v----~~~~~~   73 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG--KQKFKTKVVKN-TLNPVWNETFEFPVLDPESDTLTVEV----WDKDRF   73 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc--CceEecceeCC-CCCCcccceEEEEccCCCCCEEEEEE----EecCCC
Confidence            579999999999877788999999999976  36889999986 6999999999999987 344556655    666655


Q ss_pred             -cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          136 -EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       136 -~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                       .+.+||.+.+++.++....+....|++|
T Consensus        74 ~~~~~ig~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          74 SKDDFLGEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             CCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence             5899999999999998223445566654

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.32  E-value=8.2e-13  Score=136.49  Aligned_cols=104  Identities=26%  Similarity=0.377  Sum_probs=87.7

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC--CCceEEEEEEEEe
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV--ESSLKCEIFMMSR  130 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~--d~~LkleV~v~v~  130 (430)
                      ..|+|+|..|+||..+|..|-.||||++.|-+++.  .++||||++. +.||+|||+|+|.+...  +..|.+|||    
T Consensus       180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~DkdrRlsiEvW----  254 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKDRRLSIEVW----  254 (683)
T ss_pred             ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEecccccccceeEEEEe----
Confidence            47899999999999999999999999999988873  5899999997 79999999999999874  446777774    


Q ss_pred             ecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      |-|.. ++|++|...+.+++|..  .....||.|.+
T Consensus       255 DWDrTsRNDFMGslSFgisEl~K--~p~~GWyKlLs  288 (683)
T KOG0696|consen  255 DWDRTSRNDFMGSLSFGISELQK--APVDGWYKLLS  288 (683)
T ss_pred             cccccccccccceecccHHHHhh--cchhhHHHHhh
Confidence            44444 89999999999999985  44567887753

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.31  E-value=1.9e-11  Score=96.94  Aligned_cols=92  Identities=30%  Similarity=0.495  Sum_probs=76.3

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeeccc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~Ded~  134 (430)
                      .|.|+|++|++|......+..+|||++.+.+.....++|+++.+ ..||.|||+|.|.+... ...|.++|    ++++.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~i~v----~~~~~   75 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPELAELEIEV----YDKDR   75 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcccCEEEEEE----EecCC
Confidence            37899999999998887788999999999763224789999987 47999999999999885 45555555    77665


Q ss_pred             c-cCceeEEEEEeCccccc
Q 014112          135 L-EDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       135 v-~DdlIG~a~VPLsdLl~  152 (430)
                      . ++.+||.+.++|.++..
T Consensus        76 ~~~~~~~G~~~~~l~~~~~   94 (101)
T smart00239       76 FGRDDFIGQVTIPLSDLLL   94 (101)
T ss_pred             ccCCceeEEEEEEHHHccc
Confidence            5 59999999999999986

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02223 phosphoinositide phospholipase C

Probab=99.30  E-value=2.7e-11  Score=128.98  Aligned_cols=104  Identities=18%  Similarity=0.299  Sum_probs=81.5

Q ss_pred             ceEEEEEEEeccCCC-----CCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEEE
Q 014112           54 IGVLEVYIHQARDIH-----NICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCEI  125 (430)
Q Consensus        54 ~g~L~VtVisArnLk-----n~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~LkleV  125 (430)
                      ..+|.|+|++|+++.     ..+.....||||+|.|.+.+.  .+++|++. ++|.||+|||+|.|.|..++. .|+++|
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~-nNg~nPvWne~F~F~i~~PELAlLrf~V  486 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK-NNEWKPTWGEEFTFPLTYPDLALISFEV  486 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC-CCCcCceecceeEEEEEccCceEEEEEE
Confidence            478999999999874     123456789999999998763  36678655 558999999999999987665 356655


Q ss_pred             EEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCC
Q 014112          126 FMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSST  166 (430)
Q Consensus       126 ~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~  166 (430)
                          +|+|.. .|++||.+.+||..|..|    -+.++|..+
T Consensus       487 ----~D~D~~~~ddfiGQ~~LPv~~Lr~G----yR~VpL~~~  520 (537)
T PLN02223        487 ----YDYEVSTADAFCGQTCLPVSELIEG----IRAVPLYDE  520 (537)
T ss_pred             ----EecCCCCCCcEEEEEecchHHhcCC----ceeEeccCC
Confidence                888876 699999999999999974    245677544

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.27  E-value=2e-11  Score=109.23  Aligned_cols=97  Identities=20%  Similarity=0.215  Sum_probs=78.5

Q ss_pred             EEEEEEEeccCCC--CCCCCCC--CCcEEEEEEeCCCCCeEEeeeecCCCCC--CeecceEEEEeCcC------------
Q 014112           56 VLEVYIHQARDIH--NICIYHK--QDVYAKLCLTSDPENTVSTNIINGGGRN--PVFNENLKLNVKTV------------  117 (430)
Q Consensus        56 ~L~VtVisArnLk--n~di~gk--~DPYVkVsL~~~p~~k~KTkVikngG~N--PvWNEtF~F~V~~~------------  117 (430)
                      .|+|.|..|+|+.  +..+.|+  .||||++||.+....+++|.|+++ ..|  |+||++|.|.+...            
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~   79 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE   79 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence            3899999999955  4445675  999999999986567999999998 699  99999999987662            


Q ss_pred             --------CCceEEEEEEEEeecccc-cCceeEEEEEeCcccccc
Q 014112          118 --------ESSLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVK  153 (430)
Q Consensus       118 --------d~~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~  153 (430)
                              +......+.++++|.|.+ .|++||.+.++|..+..+
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~  124 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP  124 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence                    112334566677899988 699999999999988863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02952 phosphoinositide phospholipase C

Probab=99.20  E-value=1.9e-10  Score=124.33  Aligned_cols=119  Identities=22%  Similarity=0.293  Sum_probs=90.3

Q ss_pred             ceEEEEEEEeccCCCC------CCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEE
Q 014112           54 IGVLEVYIHQARDIHN------ICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCE  124 (430)
Q Consensus        54 ~g~L~VtVisArnLkn------~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~Lkle  124 (430)
                      ...|.|+|++|++|+-      .+.+...||||+|.|.+.+.  .+.+|+++.++ .||+|||+|.|.|...+. .++++
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~  547 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIE  547 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEE
Confidence            4689999999999742      24455679999999998653  47799999985 999999999999887554 34554


Q ss_pred             EEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          125 IFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       125 V~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                      |    +|+|.. .|++||.+.+||..|..| .   ++++|....  +.+.+.+.|-+.|.
T Consensus       548 V----~D~D~~~~ddfiGq~~lPv~~Lr~G-y---R~VpL~~~~--G~~l~~a~Llv~f~  597 (599)
T PLN02952        548 V----REYDMSEKDDFGGQTCLPVSELRPG-I---RSVPLHDKK--GEKLKNVRLLMRFI  597 (599)
T ss_pred             E----EecCCCCCCCeEEEEEcchhHhcCC-c---eeEeCcCCC--CCCCCCEEEEEEEE
Confidence            4    777766 699999999999999974 3   588885433  34555566666653

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.17  E-value=5.7e-11  Score=133.63  Aligned_cols=127  Identities=19%  Similarity=0.288  Sum_probs=97.9

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEE
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMS  129 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v  129 (430)
                      -+..|.|+|.+++|.||+..+..|..||||++.|.+.  ..++|+++++ +.||+|||.|.+.|.. ....+.+.|    
T Consensus      1036 v~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k--~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~D~~~i~v---- 1108 (1227)
T COG5038        1036 VENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEK--SVYKTKVVKK-TLNPVWNEEFTIEVLNRVKDVLTINV---- 1108 (1227)
T ss_pred             ecccCcEEEEEeccCCCcccccCCCCCceEEEEecce--ecccccchhc-cCCCCccccceEeeeccccceEEEEE----
Confidence            3457999999999999999999999999999999763  4899999998 7999999999999986 444555444    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      +|.|.. ++++||.+.++|..+.. ++......+|.++. +....|.+++...|.+.+
T Consensus      1109 ~Dwd~~~knd~lg~~~idL~~l~~-~~~~n~~i~ldgk~-~~~~~g~~~~~~~~r~~~ 1164 (1227)
T COG5038        1109 NDWDSGEKNDLLGTAEIDLSKLEP-GGTTNSNIPLDGKT-FIVLDGTLHPGFNFRSKY 1164 (1227)
T ss_pred             eecccCCCccccccccccHhhcCc-CCccceeeeccCcc-eEecccEeecceecchhh
Confidence            777776 79999999999999998 45555666775432 222344444444444443

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.17  E-value=4e-11  Score=128.19  Aligned_cols=123  Identities=17%  Similarity=0.263  Sum_probs=95.3

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK  132 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De  132 (430)
                      -...++++|+.|++|...|.-|+.||||.+.++.   .+.|||+|.. ..||+|||.|+|.+++....+++.||..  |.
T Consensus       293 wsakitltvlcaqgl~akdktg~sdpyvt~qv~k---tkrrtrti~~-~lnpvw~ekfhfechnstdrikvrvwde--d~  366 (1283)
T KOG1011|consen  293 WSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK---TKRRTRTIHQ-ELNPVWNEKFHFECHNSTDRIKVRVWDE--DN  366 (1283)
T ss_pred             cceeeEEeeeecccceecccCCCCCCcEEEeecc---cchhhHhhhh-ccchhhhhheeeeecCCCceeEEEEecC--cc
Confidence            3467899999999999999999999999999976   5889999986 7999999999999998666667666432  22


Q ss_pred             c-------cc---cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          133 N-------YL---EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       133 d-------~v---~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      |       .+   .||++|...|-+..+-   |..+.||.|..+--.....|.|+|.|+..-
T Consensus       367 dlksklrqkl~resddflgqtvievrtls---gemdvwynlekrtdksavsgairlhisvei  425 (1283)
T KOG1011|consen  367 DLKSKLRQKLTRESDDFLGQTVIEVRTLS---GEMDVWYNLEKRTDKSAVSGAIRLHISVEI  425 (1283)
T ss_pred             cHHHHHHHHhhhcccccccceeEEEEecc---cchhhhcchhhccchhhccceEEEEEEEEE
Confidence            2       12   3899999999888764   567899999643212235687777666544

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.14  E-value=3.7e-10  Score=122.10  Aligned_cols=104  Identities=18%  Similarity=0.250  Sum_probs=81.1

Q ss_pred             ceEEEEEEEeccCCC------CCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEE
Q 014112           54 IGVLEVYIHQARDIH------NICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCE  124 (430)
Q Consensus        54 ~g~L~VtVisArnLk------n~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~Lkle  124 (430)
                      ..+|.|+|+.++++.      ..+.++..||||+|.|.+.|.  .+.+|++.+| |.||+|||+|.|.+.-.+. .|+++
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf~  546 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRVE  546 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEEE
Confidence            478999999999874      124456689999999998763  3679998776 7999999999999887554 45555


Q ss_pred             EEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCC
Q 014112          125 IFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSST  166 (430)
Q Consensus       125 V~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~  166 (430)
                      |    +|+|.. +|++||...+||..|..| -   +.++|...
T Consensus       547 V----~d~d~~~~ddfiGQ~~lPv~~Lr~G-y---R~V~L~~~  581 (598)
T PLN02230        547 V----HEHDINEKDDFGGQTCLPVSEIRQG-I---HAVPLFNR  581 (598)
T ss_pred             E----EECCCCCCCCEEEEEEcchHHhhCc-c---ceEeccCC
Confidence            5    888875 799999999999999974 2   34566543

>PLN02228 Phosphoinositide phospholipase C

Probab=99.12  E-value=7.6e-10  Score=119.11  Aligned_cols=124  Identities=16%  Similarity=0.178  Sum_probs=91.7

Q ss_pred             ceEEEEEEEeccCCC------CCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCee-cceEEEEeCcCCC-ceEE
Q 014112           54 IGVLEVYIHQARDIH------NICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVF-NENLKLNVKTVES-SLKC  123 (430)
Q Consensus        54 ~g~L~VtVisArnLk------n~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvW-NEtF~F~V~~~d~-~Lkl  123 (430)
                      ...|+|+|++|++|+      ..+.+...||||+|.|.+.+.  .++||++++| |.||+| ||+|.|.+...+. .|++
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pELA~lRf  508 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPELALLWF  508 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCceeEEEE
Confidence            358999999999872      112345689999999988763  4689999987 589999 9999999876554 3444


Q ss_pred             EEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          124 EIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       124 eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      .|    +|+|.. .|++||.+.+||..|..| -   +.++|.......-+...|.+.+.+.+..
T Consensus       509 ~V----~D~d~~~~d~figq~~lPv~~Lr~G-Y---R~VpL~~~~G~~l~~atLfv~~~~~~~~  564 (567)
T PLN02228        509 KV----QDYDNDTQNDFAGQTCLPLPELKSG-V---RAVRLHDRAGKAYKNTRLLVSFALDPPY  564 (567)
T ss_pred             EE----EeCCCCCCCCEEEEEEcchhHhhCC-e---eEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence            44    887755 799999999999999873 2   3557754433323456788888777654

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.08  E-value=1.3e-09  Score=117.63  Aligned_cols=104  Identities=20%  Similarity=0.266  Sum_probs=79.8

Q ss_pred             ceEEEEEEEeccCCC----C--CCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEE
Q 014112           54 IGVLEVYIHQARDIH----N--ICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCE  124 (430)
Q Consensus        54 ~g~L~VtVisArnLk----n--~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~Lkle  124 (430)
                      ...|.|+|+.++++.    .  .+.+...||||+|.|.+.+.  .+.||+++.++ .||+|||+|.|.|.-.+. .|++.
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn-~nP~W~e~f~F~i~~PeLAllRf~  529 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDN-WIPAWDEVFEFPLTVPELALLRLE  529 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCC-CCcccCCeeEEEEEcCceeEEEEE
Confidence            468999999999752    2  23345789999999987653  47899999985 799999999999876554 34554


Q ss_pred             EEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCC
Q 014112          125 IFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSST  166 (430)
Q Consensus       125 V~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~  166 (430)
                      |    +|+|.. .|++||.+.+||..|..| -   +..+|...
T Consensus       530 V----~d~D~~~~ddfigq~~lPv~~Lr~G-y---R~V~L~~~  564 (581)
T PLN02222        530 V----HEYDMSEKDDFGGQTCLPVWELSQG-I---RAFPLHSR  564 (581)
T ss_pred             E----EECCCCCCCcEEEEEEcchhhhhCc-c---ceEEccCC
Confidence            4    887765 699999999999999974 2   34566543

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.08  E-value=2.3e-10  Score=99.08  Aligned_cols=85  Identities=20%  Similarity=0.314  Sum_probs=68.9

Q ss_pred             EEEEEEeccCCCCCC---CCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecc
Q 014112           57 LEVYIHQARDIHNIC---IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKN  133 (430)
Q Consensus        57 L~VtVisArnLkn~d---i~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded  133 (430)
                      |+|+|+.||||....   +.+++||||.|.+...  .+.|||+    ++||+|||+|.|.|.. .+.+.+.|    ||+.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~--~kaRTr~----srnd~WnE~F~i~Vdk-~nEiel~V----yDk~   69 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDV--ERARTKP----SRNDRWNEDFEIPVEK-NNEEEVIV----YDKG   69 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCE--EEEeccC----CCCCcccceEEEEecC-CcEEEEEE----EeCC
Confidence            789999999999888   6788999999999764  5888887    4999999999999953 44444444    7764


Q ss_pred             cccCceeEEEEEeCccccc
Q 014112          134 YLEDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       134 ~v~DdlIG~a~VPLsdLl~  152 (430)
                      .-..-.||-.-+.|++|..
T Consensus        70 ~~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          70 GDQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             CCeecceeeehhhHHHHHH
Confidence            3356789999999999986

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02352 phospholipase D epsilon

Probab=99.06  E-value=9.4e-10  Score=121.26  Aligned_cols=121  Identities=17%  Similarity=0.262  Sum_probs=91.6

Q ss_pred             cceEEEEEEEeccCCCCC----CCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC-CceEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNI----CIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE-SSLKCEIF  126 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~----di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d-~~LkleV~  126 (430)
                      .+|+|+++|.+|+-+...    +.. ...||||+|.|..+  +..||   .+ ..||+|||+|++.+.... ..+.|.| 
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~--~v~rt---~~-~~~p~w~e~f~i~~ah~~~~~~~f~v-   80 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNK--KVAKT---SH-EYDRVWNQTFQILCAHPLDSTITITL-   80 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCc--EEecC---CC-CCCCccccceeEEeeeecCCcEEEEE-
Confidence            589999999999854432    121 12299999999765  56778   44 469999999999999854 4444544 


Q ss_pred             EEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCC
Q 014112          127 MMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASP  187 (430)
Q Consensus       127 v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p  187 (430)
                         +|    +-++||.+.||+.+|+.++..++.||++...+..+.+...|+++|+|.|...
T Consensus        81 ---k~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  134 (758)
T PLN02352         81 ---KT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL  134 (758)
T ss_pred             ---ec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence               66    5789999999999999843448999999766544444469999999999653

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=9.8e-10  Score=114.82  Aligned_cols=96  Identities=21%  Similarity=0.291  Sum_probs=77.9

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMS  129 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v  129 (430)
                      ...|.|+|.|++||+|+..+..+-.||||++++....  ..+.||.+.++ +.||+|||+|.|.|+.... -++.|++.+
T Consensus       295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l-~~~~l~l~V  372 (421)
T KOG1028|consen  295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQL-AEVSLELTV  372 (421)
T ss_pred             cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHh-heeEEEEEE
Confidence            3469999999999999999999999999999998765  34778888776 8999999999999986222 223345566


Q ss_pred             eecccc-cCceeEEEEEeCcc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSE  149 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsd  149 (430)
                      +|++.+ .+++||.+.+....
T Consensus       373 ~d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  373 WDHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             EEcccccccceeeEEEecCCC
Confidence            888888 57799988888765

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.99  E-value=2.7e-09  Score=116.53  Aligned_cols=121  Identities=17%  Similarity=0.279  Sum_probs=88.8

Q ss_pred             eEEEEEEEeccCCC-CCCC---CCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCc-eEEEEEE
Q 014112           55 GVLEVYIHQARDIH-NICI---YHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESS-LKCEIFM  127 (430)
Q Consensus        55 g~L~VtVisArnLk-n~di---~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~-LkleV~v  127 (430)
                      .+|.|+|++++++. ..+.   ....||||.|.|-+-|.  .+.+|++++++|-||.|+|+|.|.|..++.. ++++|  
T Consensus       616 ~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V--  693 (746)
T KOG0169|consen  616 KTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEV--  693 (746)
T ss_pred             ceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEE--
Confidence            37999999999654 3222   24689999999988774  4889998888899999999999999987664 45554  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                        .|+|.. .|+++|...+|+..|..| -   +-++|.+.+......-.|-+.++|.
T Consensus       694 --~d~d~~~~ddF~GQ~tlP~~~L~~G-y---RhVpL~~~~G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  694 --HDYDYIGKDDFIGQTTLPVSELRQG-Y---RHVPLLSREGEALSSASLFVRIAIV  744 (746)
T ss_pred             --EecCCCCcccccceeeccHHHhhCc-e---eeeeecCCCCccccceeEEEEEEEe
Confidence              888887 599999999999999984 2   2346644332222344455555543

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.97  E-value=1.5e-09  Score=117.40  Aligned_cols=124  Identities=19%  Similarity=0.238  Sum_probs=102.9

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~  134 (430)
                      ..|.|+|.+|+||+..+.-|..||||.|.|...  ..+||.|+.+ +..|-|.|.|+|.|+..-..    |-|+++|+|.
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E--~v~RT~tv~k-sL~PF~gEe~~~~iP~~F~~----l~fYv~D~d~   77 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE--EVCRTATVEK-SLCPFFGEEFYFEIPRTFRY----LSFYVWDRDL   77 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecch--hhhhhhhhhh-hcCCccccceEEecCcceee----EEEEEecccc
Confidence            468999999999999999999999999999643  6899999998 79999999999999973233    3455589994


Q ss_pred             ccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          135 LEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       135 v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      -+|+.||.+-|-=.+|..- ...+.||.|..-|.-...+|+|+|+|.+.+..
T Consensus        78 ~~D~~IGKvai~re~l~~~-~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~  128 (800)
T KOG2059|consen   78 KRDDIIGKVAIKREDLHMY-PGKDTWFSLQPVDPDSEVQGKVHLELALTEAI  128 (800)
T ss_pred             ccccccceeeeeHHHHhhC-CCCccceeccccCCChhhceeEEEEEEecccc
Confidence            4899999999998888763 34568999976554445799999999999875

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.78  E-value=2.1e-08  Score=109.87  Aligned_cols=94  Identities=17%  Similarity=0.297  Sum_probs=78.8

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeec-ceEEEEeCcCCC-ceEEEEEEEEe
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFN-ENLKLNVKTVES-SLKCEIFMMSR  130 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWN-EtF~F~V~~~d~-~LkleV~v~v~  130 (430)
                      ..|.|.||.||.|+... .|..-|||.|.|-+++  ..+++|+++..+|.||+|| |+|+|.|.+++- .|++.|    +
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V----~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVV----Y 1139 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEE----e
Confidence            68899999999999543 3667899999998876  3577888888789999999 999999998644 466655    9


Q ss_pred             ecccc-cCceeEEEEEeCcccccc
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVK  153 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~  153 (430)
                      ++|.+ ...+||.+.+|+..|..|
T Consensus      1140 eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1140 EEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             cccccCCcceeeeeecchhhhhcc
Confidence            99988 457999999999999974

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.41  E-value=3.9e-08  Score=106.92  Aligned_cols=132  Identities=19%  Similarity=0.293  Sum_probs=97.0

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---------------------------Ce-EEeeeecCCCCC
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---------------------------NT-VSTNIINGGGRN  103 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---------------------------~k-~KTkVikngG~N  103 (430)
                      .|...|.|.+..|+||.+.+..|-.|||+.+.+.+...                           +- +-|.| +..+.|
T Consensus       111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsv-k~~TLn  189 (1103)
T KOG1328|consen  111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSV-KKKTLN  189 (1103)
T ss_pred             CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccc-ccccCC
Confidence            46677889999999999999999999999987764321                           11 12344 445899


Q ss_pred             CeecceEEEEeCcCC-CceEEEEEEEEeecc------------------------------cc---cCceeEEEEEeCcc
Q 014112          104 PVFNENLKLNVKTVE-SSLKCEIFMMSRVKN------------------------------YL---EDQLLGFTLVPLSE  149 (430)
Q Consensus       104 PvWNEtF~F~V~~~d-~~LkleV~v~v~Ded------------------------------~v---~DdlIG~a~VPLsd  149 (430)
                      |+|||+|.|.|.++. ..+++.||..-.+..                              ..   .||++|.+.|||++
T Consensus       190 PkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E  269 (1103)
T KOG1328|consen  190 PKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE  269 (1103)
T ss_pred             cchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence            999999999999953 357777764311000                              00   28999999999999


Q ss_pred             ccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          150 VLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       150 Ll~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      |-. .| +++||.|..+.-..+.+|.++|.|.+....
T Consensus       270 iP~-~G-ld~WFkLepRS~~S~VqG~~~LklwLsT~e  304 (1103)
T KOG1328|consen  270 IPP-DG-LDQWFKLEPRSDKSKVQGQVKLKLWLSTKE  304 (1103)
T ss_pred             CCc-ch-HHHHhccCcccccccccceEEEEEEEeeec
Confidence            986 23 579999975543445799999999887653

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.35  E-value=1.7e-06  Score=92.72  Aligned_cols=120  Identities=17%  Similarity=0.266  Sum_probs=95.8

Q ss_pred             eEEEEEEEeccCCCCCCCCC-CCCcEEEEEEeCCCCCeEEeeeecCCCCCCeec-ceEEEEeCcC---CCceEEEEEEEE
Q 014112           55 GVLEVYIHQARDIHNICIYH-KQDVYAKLCLTSDPENTVSTNIINGGGRNPVFN-ENLKLNVKTV---ESSLKCEIFMMS  129 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~g-k~DPYVkVsL~~~p~~k~KTkVikngG~NPvWN-EtF~F~V~~~---d~~LkleV~v~v  129 (430)
                      |.|-|.|..||+|+-+|..+ -.|.||.+.+..   ..+||.|..+ ..||.|| +-|+|.|.+.   +..|.+.|    
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n---~t~ktdvf~k-slnp~wnsdwfkfevddadlqdeplqi~l----   74 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN---TTFKTDVFLK-SLNPQWNSDWFKFEVDDADLQDEPLQIRL----   74 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecc---cceehhhhhh-hcCCcccccceEEecChhhhccCCeeEEE----
Confidence            67899999999999888764 579999999976   6999999998 6999999 5699999883   33455554    


Q ss_pred             eecccc-cCceeEEEEEeCcccccc---------CceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVK---------NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~---------~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      .|+|.. .+|.||.+.|+|..|+..         +..+..||++-  |..|.-+|+|.+-+....
T Consensus        75 ld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pif--dtihgirgeinvivkvdl  137 (1169)
T KOG1031|consen   75 LDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIF--DTIHGIRGEINVIVKVDL  137 (1169)
T ss_pred             ecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecc--eecccccceeEEEEEEee
Confidence            788866 799999999999988753         12466899984  445777999998877544

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.32  E-value=4.2e-07  Score=102.90  Aligned_cols=105  Identities=25%  Similarity=0.344  Sum_probs=83.1

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEE-eCc---CCCceEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLN-VKT---VESSLKCEIFM  127 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~-V~~---~d~~LkleV~v  127 (430)
                      .|+|.|-|+.|++|.-..-....||||+.+|.+++.  .+.|||++++ ++||.|||.+.++ ++-   ....|.+.|  
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l~qReLQ~sV-- 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEILQQRELQVSV-- 1599 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhhhhheeeeee--
Confidence            589999999999997655566799999999999874  4889999997 7999999999887 222   112344444  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                        ...+.+ .+.++|.+.+||.++.. ..+...||.|.
T Consensus      1600 --ls~~~~~en~~lg~v~i~L~~~~l-~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1600 --LSNGGLLENVFLGGVNIPLLKVDL-LKESVGWYNLG 1634 (1639)
T ss_pred             --ecccceeeeeeeeeeecchhhcch-hhhhcceeecc
Confidence              334444 79999999999999987 45566999995

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=1.3e-07  Score=95.61  Aligned_cols=131  Identities=21%  Similarity=0.244  Sum_probs=95.1

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEE-eCcCCCceEEEEEEEEe
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLN-VKTVESSLKCEIFMMSR  130 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~-V~~~d~~LkleV~v~v~  130 (430)
                      ..+|+.+|..|++|+.+++.+..|||+++.|.+..  ..+++|+|..| +.||.|||+.... |.+.+..++.+ .+.++
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~~~K~~-Rk~vc  169 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDTHLKVL-RKVVC  169 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchhhhhhh-heeec
Confidence            46789999999999999999999999999998653  24788999876 7999999986664 33322322221 23348


Q ss_pred             ecccc-cCceeEEEEEeCccccccCc-eeeEEE--Ecc--CCCCCC-CCCcEEEEEEEEEccC
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNG-KLEKEF--SLS--STDLFH-SPAGFVQLSLAYAGAS  186 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~-~l~~~f--~Ls--s~dl~~-~p~G~I~LsLsf~p~~  186 (430)
                      |++.+ .++.+|...|+|..+..... ....||  .+.  ..+.-+ .++|.|.++|.|....
T Consensus       170 dn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~  232 (362)
T KOG1013|consen  170 DNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTT  232 (362)
T ss_pred             cCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCC
Confidence            88877 69999999999999997422 233443  222  222222 4789999999988765

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.27  E-value=3.3e-07  Score=99.91  Aligned_cols=98  Identities=20%  Similarity=0.259  Sum_probs=79.9

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC----CCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP----ENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMM  128 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p----~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~  128 (430)
                      ..+|.|.|+.|++|-..|..|-.||||+|.|.+--    -..+||+|++. +.||+|+|+|.|.|+.. -..-...|.|.
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEEE
Confidence            45788889999999999999999999999997532    13679999998 89999999999999872 11112225566


Q ss_pred             Eeecccc-cCceeEEEEEeCccccc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~  152 (430)
                      ++|+|++ .+|+-|++.+-|.++-.
T Consensus      1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             eeccceecccccchHHHHhhCCCCC
Confidence            6999999 69999999999998863

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.98  E-value=5.5e-06  Score=93.03  Aligned_cols=94  Identities=22%  Similarity=0.274  Sum_probs=74.8

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEEee
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMSRV  131 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v~D  131 (430)
                      .-..++|+|++|-+|...|..|++|||++|.++.. ...-++..+.+ +.||+|++.|.+.+.- .+..|.++|    ||
T Consensus       611 i~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~-~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v~v----yd  684 (1105)
T KOG1326|consen  611 IKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKK-RTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIVEV----YD  684 (1105)
T ss_pred             ceeeEEEEEEEeeeccccCCCCCcCceeeeeeccc-hhhhhhhcCcC-CCCcHHHHHHHhhcccchhhcceeEE----EE
Confidence            34677899999999999999999999999999753 22346677776 8999999998877654 234556655    88


Q ss_pred             cccc-cCceeEEEEEeCccccc
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~  152 (430)
                      .|.+ +|+.||+..++|..=..
T Consensus       685 ~D~~~~d~~iget~iDLEnR~~  706 (1105)
T KOG1326|consen  685 HDLEAQDEKIGETTIDLENRWL  706 (1105)
T ss_pred             eecccccchhhceehhhhhccc
Confidence            8887 69999999999975443

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=97.95  E-value=1.4e-05  Score=87.24  Aligned_cols=137  Identities=19%  Similarity=0.235  Sum_probs=92.8

Q ss_pred             EEEEeccCCCCCCCCCCCCcEEEEEEeCCC-CCeEEeeeecCCCCCCeecceEEEEeCcC----------------CCce
Q 014112           59 VYIHQARDIHNICIYHKQDVYAKLCLTSDP-ENTVSTNIINGGGRNPVFNENLKLNVKTV----------------ESSL  121 (430)
Q Consensus        59 VtVisArnLkn~di~gk~DPYVkVsL~~~p-~~k~KTkVikngG~NPvWNEtF~F~V~~~----------------d~~L  121 (430)
                      ..++++|++-... .+.+||||++...+.. ....+|++.+. +.||.|||.|.|.+...                ...|
T Consensus       135 c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i  212 (800)
T KOG2059|consen  135 CHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI  212 (800)
T ss_pred             hhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence            3445555554433 4669999999987643 23469999998 79999999999998864                1123


Q ss_pred             EEEEEEEEee-cccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCC-----CCCCcEEEEEEEEEc----------
Q 014112          122 KCEIFMMSRV-KNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF-----HSPAGFVQLSLAYAG----------  184 (430)
Q Consensus       122 kleV~v~v~D-ed~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~-----~~p~G~I~LsLsf~p----------  184 (430)
                      ++++    ++ -+.+ .++++|++.+|+..+.. ......||-|..++-.     +.--|.++|.+.|.-          
T Consensus       213 rv~l----W~~~~~~~~~~FlGevrv~v~~~~~-~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlps~~Y~  287 (800)
T KOG2059|consen  213 RVDL----WNDLNLVINDVFLGEVRVPVDVLRQ-KSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLPSQYYK  287 (800)
T ss_pred             EEee----ccchhhhhhhhhceeEEeehhhhhh-ccCccceEEEecCCCcccCCCCCCccceeeeEEeeeceeccHhhhh
Confidence            4444    44 3444 69999999999998885 3445689988644321     224688999999875          


Q ss_pred             -------cCCCcccCCCCCCccccc
Q 014112          185 -------ASPDVMAIPAVPKPLAAD  202 (430)
Q Consensus       185 -------~~p~~~~~~~~p~~~~tn  202 (430)
                             .+++++++++-+-.||..
T Consensus       288 pL~~LLl~s~d~~p~taS~v~ileE  312 (800)
T KOG2059|consen  288 PLMDLLLESVDVQPITASAVAILEE  312 (800)
T ss_pred             hHHHHHHhcccccccchhHHHHHHH
Confidence                   344566666655444443

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=6.1e-05  Score=81.93  Aligned_cols=108  Identities=15%  Similarity=0.187  Sum_probs=86.7

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCC----CCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSD----PENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMS  129 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~----p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v  129 (430)
                      -..++|.|+.|.||+..- .|--.|||.|.|-+-    ..+++.|++-.| +--|.+||+|+|.+......-..|+.+.+
T Consensus      1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGGPEHYELQFCV 1201 (1283)
T ss_pred             cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCCCceEEEEEee
Confidence            467899999999999743 466689999999753    246888998665 79999999999999874444455666666


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      .|+.+- .|+.+|-+.++|.++.. .|....|++|.
T Consensus      1202 KDYCFAReDRvvGl~VlqL~~va~-kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1202 KDYCFAREDRVVGLAVLQLRSVAD-KGSCACWVPLG 1236 (1283)
T ss_pred             hhheeecccceeeeeeeehhhHhh-cCceeEeeecc
Confidence            777666 59999999999999998 47778999995

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.60  E-value=0.00011  Score=66.34  Aligned_cols=106  Identities=24%  Similarity=0.350  Sum_probs=72.4

Q ss_pred             EEEEEEeccCCCCC---------CCC----CCCCcEEEEEEeCCC-CCeEEeeeecCCCCCCeecceEEEEeCc------
Q 014112           57 LEVYIHQARDIHNI---------CIY----HKQDVYAKLCLTSDP-ENTVSTNIINGGGRNPVFNENLKLNVKT------  116 (430)
Q Consensus        57 L~VtVisArnLkn~---------di~----gk~DPYVkVsL~~~p-~~k~KTkVikngG~NPvWNEtF~F~V~~------  116 (430)
                      |.|.|++|.+|+..         ++-    -..++||++.+.--+ ....+||++.+ +.-|.||.+|.|.++=      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence            57889999999732         111    125899999965433 36889999998 7999999999999871      


Q ss_pred             CCC-----ce-EEEEEEEEeecc-----------cccCceeEEEEEeCccccccCceeeEEEEc
Q 014112          117 VES-----SL-KCEIFMMSRVKN-----------YLEDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       117 ~d~-----~L-kleV~v~v~Ded-----------~v~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                      .+.     .| .-++.+.+++++           ..+|-+||.+.|||.+|+....-+..||++
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            010     11 112333334433           125789999999999999843346789875

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.47  E-value=0.00046  Score=77.39  Aligned_cols=90  Identities=18%  Similarity=0.340  Sum_probs=72.2

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC----CeEEeeeecCCCCCCeecce-EEEE-eCcCC-CceEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE----NTVSTNIINGGGRNPVFNEN-LKLN-VKTVE-SSLKCEI  125 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~----~k~KTkVikngG~NPvWNEt-F~F~-V~~~d-~~LkleV  125 (430)
                      -.++|.|+||+++-|.+..+    ..||.|.+-+-|.    +.+|||++.++|.||+|||. |.|+ |--++ ..|++.|
T Consensus       701 IA~t~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiav  776 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAV  776 (1189)
T ss_pred             EEeeEEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeee
Confidence            35789999999999998764    4899999988773    57899999999999999975 8886 32222 3567766


Q ss_pred             EEEEeecccccCceeEEEEEeCcccccc
Q 014112          126 FMMSRVKNYLEDQLLGFTLVPLSEVLVK  153 (430)
Q Consensus       126 ~v~v~Ded~v~DdlIG~a~VPLsdLl~~  153 (430)
                          |++   +..+||.-.+||..|..|
T Consensus       777 ----yeE---ggK~ig~RIlpvd~l~~G  797 (1189)
T KOG1265|consen  777 ----YEE---GGKFIGQRILPVDGLNAG  797 (1189)
T ss_pred             ----ecc---CCceeeeeccchhcccCc
Confidence                776   478999999999999873

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.00022  Score=72.58  Aligned_cols=90  Identities=14%  Similarity=0.073  Sum_probs=71.7

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ...-|.|+++....|-..|..+..||||..++..+-  .-++||++.++ +.||+||+.|.|.|...+. ..+.|.+.+.
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL-a~~kv~lsvg  308 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL-AYKKVALSVG  308 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccch-hcceEEEeec
Confidence            346688999999999999999999999999998553  24789999887 8999999999999998655 4555656667


Q ss_pred             ecccc-cCceeEEEE
Q 014112          131 VKNYL-EDQLLGFTL  144 (430)
Q Consensus       131 Ded~v-~DdlIG~a~  144 (430)
                      |.+.. ..+.+|-..
T Consensus       309 d~~~G~s~d~~GG~~  323 (362)
T KOG1013|consen  309 DYDIGKSNDSIGGSM  323 (362)
T ss_pred             ccCCCcCccCCCccc
Confidence            77655 567777443

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=97.17  E-value=0.00043  Score=72.35  Aligned_cols=167  Identities=19%  Similarity=0.156  Sum_probs=113.1

Q ss_pred             ccccccccccCCCCcCcccccccCcc-----ccCccccchhhhccCCCCccceEEEEEEEeccCCCCCCCCCCCCcEEEE
Q 014112            8 VSPFKSSVAAEPEKHKSDFFARSGSL-----TKGTEANRKEAVMSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKL   82 (430)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~L~VtVisArnLkn~di~gk~DPYVkV   82 (430)
                      +++|..  ++-.-|+-.+.+|+..-.     ..|++.---+...... .-.-..|++.|++.+++.-..--...|-|+++
T Consensus       318 ~~rfe~--laq~~kkdl~lvq~~~a~gl~~Pkfhye~R~fq~v~~f~-dl~d~elel~ivrg~~~pvp~gp~hld~fvr~  394 (523)
T KOG3837|consen  318 NSRFEP--LAQPKKKDLRLVQSGSAPGLKAPKFHYETRAFQQVAFFE-DLKDQELELAIVRGQKNPVPGGPMHLDQFVRL  394 (523)
T ss_pred             cccccc--cccccccchhHhhhhhccCCCCCcchhhhhhcchhhhcc-ccchhHhHHHHhhcccCCCCCCchhHHhhhcc
Confidence            345542  455555555556654322     4455544344444554 34456788999999988765544567889988


Q ss_pred             EEeC--CCCCeEEeeeecCCCCCCeecceEEEEeCcCCC------------ceEEEEEEEEeecccc--cCceeEEEEEe
Q 014112           83 CLTS--DPENTVSTNIINGGGRNPVFNENLKLNVKTVES------------SLKCEIFMMSRVKNYL--EDQLLGFTLVP  146 (430)
Q Consensus        83 sL~~--~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~------------~LkleV~v~v~Ded~v--~DdlIG~a~VP  146 (430)
                      ...-  +..++.+|.++++ +..|.|+|.|.+.|.....            .++|+|    +.+..+  .|+++|++.+-
T Consensus       395 efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfei----fhkggf~rSdkl~gt~nik  469 (523)
T KOG3837|consen  395 EFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEI----FHKGGFNRSDKLTGTGNIK  469 (523)
T ss_pred             cccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEE----eeccccccccceeceeeee
Confidence            7653  3357889999997 8999999999999987211            245555    888766  59999999999


Q ss_pred             CccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112          147 LSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       147 LsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~  185 (430)
                      |..|.. .-++...++|.  |......|.|.+.+...-.
T Consensus       470 le~Len-~cei~e~~~l~--DGRK~vGGkLevKvRiR~P  505 (523)
T KOG3837|consen  470 LEILEN-MCEICEYLPLK--DGRKAVGGKLEVKVRIRQP  505 (523)
T ss_pred             ehhhhc-ccchhhceecc--ccccccCCeeEEEEEEecc
Confidence            998875 34556677774  4434457888888876643

>PLN02964 phosphatidylserine decarboxylase

Probab=97.02  E-value=0.00094  Score=73.77  Aligned_cols=90  Identities=18%  Similarity=0.262  Sum_probs=69.0

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      +...|.+.|+|++|+    ++.   .|+|..+---+.  +.+||.+.++ +.||+||+...|.|.....  ++ ..+.++
T Consensus        50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~g~--~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~--~~-~~~~~~  116 (644)
T PLN02964         50 EDFSGIALLTLVGAE----MKF---KDKWLACVSFGE--QTFRTETSDS-TDKPVWNSEKKLLLEKNGP--HL-ARISVF  116 (644)
T ss_pred             ccccCeEEEEeehhh----hcc---CCcEEEEEEecc--eeeeeccccc-cCCcccchhhceEeccCCc--ce-EEEEEE
Confidence            356899999999998    332   377765433332  7999999987 8999999999999887332  23 244558


Q ss_pred             ecccc-cCceeEEEEEeCcccccc
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVK  153 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~  153 (430)
                      |.+.+ .++++|.+.++|.++...
T Consensus       117 ~~~~~s~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        117 ETNRLSKNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             ecCCCCHHHhhhheeecHhhccHH
Confidence            88887 699999999999999873

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.97  E-value=0.0013  Score=56.17  Aligned_cols=91  Identities=12%  Similarity=0.127  Sum_probs=64.8

Q ss_pred             EEEEEeccCCCCCCCCC-CCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc-
Q 014112           58 EVYIHQARDIHNICIYH-KQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL-  135 (430)
Q Consensus        58 ~VtVisArnLkn~di~g-k~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v-  135 (430)
                      =|+|++.+||....-.| .+..|++--|+-.+.-.+||.+- .|..||+|+|||.|.|.-... -.+.|.+.++.  .. 
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~qL-~~V~L~fsv~~--~~~   77 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQNL-QTVRLVFKIQT--QTP   77 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhhc-cceEEEEEeec--cCC
Confidence            37899999998665544 67889986665444457788764 568999999999999875222 12233344454  44 


Q ss_pred             cCceeEEEEEeCccccc
Q 014112          136 EDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       136 ~DdlIG~a~VPLsdLl~  152 (430)
                      +.+.||++.+.|+.+-.
T Consensus        78 RKe~iG~~sL~l~s~ge   94 (103)
T cd08684          78 RKRTIGECSLSLRTLST   94 (103)
T ss_pred             ccceeeEEEeecccCCH
Confidence            78999999999987754

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.84  E-value=0.015  Score=53.71  Aligned_cols=105  Identities=20%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCCC----ceEEEEEE
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVES----SLKCEIFM  127 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d~----~LkleV~v  127 (430)
                      ..|+|+|+.|.++.-.   ...|.||++.|-.+..   ....|+-+.  ..++.|||-+.|+|.-.+.    .|.+.|  
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti--   80 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSI--   80 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEE--
Confidence            4688999999988743   3469999998876431   122454443  3789999999998764333    444444  


Q ss_pred             EEeeccc--c---cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112          128 MSRVKNY--L---EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       128 ~v~Ded~--v---~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~  185 (430)
                        ++...  .   ....||.+.++|=+...         .|        .+|...|.|...+.
T Consensus        81 --~~~~~~~~~k~~~~~iG~~ni~LFd~~~---------~L--------r~G~~~L~lW~~~~  124 (158)
T cd08398          81 --CSVKGRKGAKEEHCPLAWGNINLFDYTD---------TL--------VSGKMALNLWPVPH  124 (158)
T ss_pred             --EEEecccCCCCceEEEEEEEEEEECCCC---------hh--------hCCCEEEEEEcCCc
Confidence              43221  1   23569999988766331         22        36777777775443

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.75  E-value=0.016  Score=54.08  Aligned_cols=94  Identities=18%  Similarity=0.295  Sum_probs=59.0

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEE
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFM  127 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v  127 (430)
                      ..++|+|+.+.+|.-  -....+.||++.|-....   ....|+...- ...+.|||.+.|+|.-.    +..|.+.||.
T Consensus         8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~   84 (173)
T cd08693           8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYE   84 (173)
T ss_pred             CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEE
Confidence            468999999999884  124578899987765431   2345655442 47899999999986643    2345555543


Q ss_pred             EEeecc-------------cccCceeEEEEEeCcccc
Q 014112          128 MSRVKN-------------YLEDQLLGFTLVPLSEVL  151 (430)
Q Consensus       128 ~v~Ded-------------~v~DdlIG~a~VPLsdLl  151 (430)
                      ......             ...+..||.+.++|=+..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~  121 (173)
T cd08693          85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK  121 (173)
T ss_pred             ecccccccccccccccccccCcceEEEEEeEEEEccc
Confidence            211110             012568888888876643

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=96.68  E-value=0.086  Score=46.37  Aligned_cols=127  Identities=12%  Similarity=0.122  Sum_probs=80.1

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc---CC-C-ceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT---VE-S-SLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~---~d-~-~LkleV~v  127 (430)
                      .-..+.|+|++..+++.    ....+||+...+........|.........-.|||+|.+.+.=   .+ . .....+.+
T Consensus         5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            44678999999999987    3345555554432211145666666556788999999987653   11 1 22223444


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccC-ceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKN-GKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~-~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      .++....- ....||.+.|+|+++.... ......|+|...   ......++|+|.+.+-.
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~---~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC---KKSNATLSISISLSELR  138 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC---CCCCcEEEEEEEEEECc
Confidence            44544222 2369999999999999742 455677888643   23466788888776543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.39  E-value=0.031  Score=51.77  Aligned_cols=113  Identities=17%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeec---CCCCCCeecceEEEEeCcCCC----ceEEE
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIIN---GGGRNPVFNENLKLNVKTVES----SLKCE  124 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVik---ngG~NPvWNEtF~F~V~~~d~----~Lkle  124 (430)
                      ..|.|+|.++.++.....-...|-||.++|.....   ....|+...   .-...+.|||.+.|+|.-.+.    .|.+.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            56889999999998655334578999998876531   123444321   112367799999998764333    44554


Q ss_pred             EEEEEeecc------cccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          125 IFMMSRVKN------YLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       125 V~v~v~Ded------~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      ||-.....+      ...+..||.+.++|=+...         .|        .+|...|.|....
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~---------~L--------~~G~~~L~lW~~~  136 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG---------VL--------RQGSLLLGLWPPS  136 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEcchh---------hh--------ccCCEEEEeccCC
Confidence            433211110      0135789999998766432         22        3788888887543

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.0054  Score=63.61  Aligned_cols=108  Identities=17%  Similarity=0.188  Sum_probs=79.1

Q ss_pred             cceEEEEEEEeccCCCCC-CCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNI-CIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMS  129 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~-di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v  129 (430)
                      ..|.|+|-||.|++|... ....-.+|||+|++.....  .+.+||...+ +..|.+-+.+.|.=......|...+|   
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~~k~Lq~tv~---  342 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPPGKYLQGTVW---  342 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCCccEEEEEEe---
Confidence            468999999999999643 2234789999999997753  4778998887 45555545677765555556666664   


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      -|...+ .+.++|.+.+-|.+|.........||.|-
T Consensus       343 gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlf  378 (405)
T KOG2060|consen  343 GDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLF  378 (405)
T ss_pred             ccccccchHHHhhHHHHHhhhhccccccceeeeecc
Confidence            455555 58899999999999887543566899884

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.88  E-value=0.044  Score=49.58  Aligned_cols=91  Identities=21%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCCC----ceEEEEEE
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVES----SLKCEIFM  127 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d~----~LkleV~v  127 (430)
                      ..|+|+|+...++.. ......+.||++.|.....   ....|+.... +.++.|||.+.|+|.-.+.    .|.+.|  
T Consensus         8 ~~~~i~i~~~~~~~~-~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl--   83 (156)
T cd08380           8 FNLRIKIHGITNINL-LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSI--   83 (156)
T ss_pred             CCeEEEEEeeccccc-cCCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEE--
Confidence            467888888888764 1124578999988876431   2335544432 4789999999998654323    444444  


Q ss_pred             EEeecccc---cCceeEEEEEeCcccc
Q 014112          128 MSRVKNYL---EDQLLGFTLVPLSEVL  151 (430)
Q Consensus       128 ~v~Ded~v---~DdlIG~a~VPLsdLl  151 (430)
                        ++....   .+..||.+.++|=+..
T Consensus        84 --~~~~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          84 --YAVSEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             --EEEecCCCCcceEEEEEeEEeEccc
Confidence              443322   3689999999987643

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.72  E-value=0.11  Score=48.99  Aligned_cols=111  Identities=15%  Similarity=0.063  Sum_probs=65.0

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCC----ceEEEEEEE
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVES----SLKCEIFMM  128 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~----~LkleV~v~  128 (430)
                      ..++|+|+.+. +.+.+.......||++.|-...  ....+|....- +.+|.|||-+.|+|.-.+.    .|.+.||-.
T Consensus        10 ~~friki~~~~-~~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~   87 (178)
T cd08399          10 RKFRVKILGID-IPVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG   87 (178)
T ss_pred             CCEEEEEEeec-ccCcCCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEE
Confidence            46788999997 4545444456788888766532  12335555554 5789999999988765333    455555322


Q ss_pred             Eeecc---cc----------cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          129 SRVKN---YL----------EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       129 v~Ded---~v----------~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      .....   .+          .+..||.+.+.|=+...         .|        .+|...|.+.-.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~---------~L--------r~G~~~L~~W~~~  139 (178)
T cd08399          88 KAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF---------LL--------RTGEYVLHMWQIS  139 (178)
T ss_pred             ecCcccccccccccccccccccceEEEEEEEEEcCCC---------ce--------ecCCEEEEEecCC
Confidence            10000   00          25677777777655331         12        3677777776554

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=94.48  E-value=0.0091  Score=68.07  Aligned_cols=120  Identities=13%  Similarity=0.049  Sum_probs=82.1

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEE---eCc-CCC---ceEE
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN---VKT-VES---SLKC  123 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~---V~~-~d~---~Lkl  123 (430)
                      +..+..|+++|.+|+.|...+.-+-.|||+.+..-+   +.+.|-++.+ +.||.||++..|.   |.. ...   ...+
T Consensus       202 e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~---qs~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi  277 (1105)
T KOG1326|consen  202 EVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCG---QSKETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPI  277 (1105)
T ss_pred             hhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhccc---ccceeEeecC-cCCCCccceeeccceeecCccchhhcCCCe
Confidence            445667889999999999999889999999999876   6788999886 8999999998886   222 111   1122


Q ss_pred             EEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEE
Q 014112          124 EIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSL  180 (430)
Q Consensus       124 eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsL  180 (430)
                       +.|.+||.+.. .++++|+...-..=... .+ --+|+++....   ...|.+.++.
T Consensus       278 -~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p-~lkw~p~~rg~---~l~gd~l~a~  329 (1105)
T KOG1326|consen  278 -RVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CP-ALKWVPTMRGA---FLDGDVLIAA  329 (1105)
T ss_pred             -EEEEeehhhhhchHHhhcccccceEEEec-CC-ccceEEeeccc---ccccchhHHH
Confidence             23455887766 69999987654432222 11 23688876432   2455555443

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=94.41  E-value=0.5  Score=43.99  Aligned_cols=133  Identities=15%  Similarity=0.108  Sum_probs=85.3

Q ss_pred             ccceEEEEEEEeccCCCCC-CCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC------C--ce
Q 014112           52 NFIGVLEVYIHQARDIHNI-CIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE------S--SL  121 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~-di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d------~--~L  121 (430)
                      .....|+|+|+.+|-.-+. +.. +..+.-.+|+|.= ..++++|+.+. +..+|-|+|.|.|.+....      .  .+
T Consensus         6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f-~~QRF~S~~Vp-~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll   83 (156)
T PF15627_consen    6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF-RGQRFRSKPVP-CACEPDFNEEFLFELPRDSFGAGSTATTLL   83 (156)
T ss_pred             CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe-cCceEecCCcc-cccCCCCCCcEEEEecccccccccchhHhh
Confidence            4567899999998855321 111 5566666666653 23899999998 5799999999999998732      1  11


Q ss_pred             EE--EEEEEEeecccc-cCceeEEEEEeCccccccCcee--eEEEEccCCCCC-CCCCcEEEEEEEEEccCC
Q 014112          122 KC--EIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKL--EKEFSLSSTDLF-HSPAGFVQLSLAYAGASP  187 (430)
Q Consensus       122 kl--eV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l--~~~f~Lss~dl~-~~p~G~I~LsLsf~p~~p  187 (430)
                      .+  -|++.+--.|.. ...++|.-.+.=..++.. +..  .-..+|.....- +-+.|.|.|+|+..|..+
T Consensus        84 s~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s-~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~  154 (156)
T PF15627_consen   84 SISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCS-GNGSTSFTVELCGVGPESKVPVGILDLRLELLPNLN  154 (156)
T ss_pred             cCCCceEEEEEEecCCCceEeeeeceehHHHHhcc-CCCccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence            11  122222222322 448888888888888863 332  344555432211 237999999999999763

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=93.13  E-value=1.1  Score=41.60  Aligned_cols=108  Identities=25%  Similarity=0.294  Sum_probs=71.3

Q ss_pred             CCCCCcEEEEEEeCCCCCeEEeeeecC-CCCCCeecceEEEEeCcCCCceEEEEEEEEeecccccCceeEEEEEeCcccc
Q 014112           73 YHKQDVYAKLCLTSDPENTVSTNIING-GGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVL  151 (430)
Q Consensus        73 ~gk~DPYVkVsL~~~p~~k~KTkVikn-gG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl  151 (430)
                      ..+..-|++|.+++.  ...+|+...- ....=.|||.|.++|......|.++|    |......+.+|+.+.+||....
T Consensus        34 ~~~~~~~ikl~~N~k--~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i----~E~~~~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   34 VQKTRYYIKLFFNDK--EVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEI----YEKSGLSDRLLAEVFVPVPGST  107 (168)
T ss_pred             hhheeEEEEEEECCE--EEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEE----EEccCccceEEEEEEeeCCCCc
Confidence            345678999999753  5666665543 34556688999999988666677776    6555578999999999998776


Q ss_pred             ccCce---eeEEEEccCCCCCC-------------------CCCcEEEEEEEEEccC
Q 014112          152 VKNGK---LEKEFSLSSTDLFH-------------------SPAGFVQLSLAYAGAS  186 (430)
Q Consensus       152 ~~~~~---l~~~f~Lss~dl~~-------------------~p~G~I~LsLsf~p~~  186 (430)
                      .....   ...+|.+++....+                   .-.|.|.++++|....
T Consensus       108 ~~~~~~~~~~~~~eFsS~~~~~~~~~~vg~~~~~~~~~~~~~tsG~l~~~~sW~~~~  164 (168)
T PF15625_consen  108 VHTSTDNVPLEEYEFSSDQPVHPDHEGVGSFEADGSNSTSLFTSGSLSYSVSWAVGE  164 (168)
T ss_pred             ccccccCCceEeEEEcCCceeeccceeccccccCCCCcccceeeeEEEEecEEeCCC
Confidence            53111   33566665332111                   1257777777776654

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=93.08  E-value=0.14  Score=55.52  Aligned_cols=87  Identities=16%  Similarity=0.269  Sum_probs=63.9

Q ss_pred             EEEeccCCCCCCCCCCCCcEEEEEEeCCC---CCeEEeeeecCCCCCCeecceEEEEeCc-----CCCceEEEEEEEEee
Q 014112           60 YIHQARDIHNICIYHKQDVYAKLCLTSDP---ENTVSTNIINGGGRNPVFNENLKLNVKT-----VESSLKCEIFMMSRV  131 (430)
Q Consensus        60 tVisArnLkn~di~gk~DPYVkVsL~~~p---~~k~KTkVikngG~NPvWNEtF~F~V~~-----~d~~LkleV~v~v~D  131 (430)
                      -.++|++|.+.+++++.|||-.+.=..+.   ...++|.++++ ++||.|-. |.+....     .+..+.+++    ||
T Consensus       141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~----~d  214 (529)
T KOG1327|consen  141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAP-FSISLQSLCSKDGNRPIQIEC----YD  214 (529)
T ss_pred             eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceecc-CCCCcccc-cccchhhhcccCCCCceEEEE----ec
Confidence            34568999999999999999987654221   34789999998 79999986 4544443     123444444    66


Q ss_pred             cccc-cCceeEEEEEeCccccc
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~  152 (430)
                      .+.- .+++||.+..++.++..
T Consensus       215 ~~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  215 YDSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             cCCCCCcCceeEecccHHHhcc
Confidence            6655 47999999999998863

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.78  E-value=0.37  Score=44.50  Aligned_cols=96  Identities=17%  Similarity=0.083  Sum_probs=59.2

Q ss_pred             CCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc-cCceeEEEEEeCcc
Q 014112           74 HKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL-EDQLLGFTLVPLSE  149 (430)
Q Consensus        74 gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v-~DdlIG~a~VPLsd  149 (430)
                      ...|.||++.|-.+..   ....|+... .+..+.|||-+.|+|.-.+..+...|.+.+++.... ....||.+.++|=+
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd  106 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN  106 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence            4578999988876431   133555444 357789999999987754333222233333554322 46799999999765


Q ss_pred             ccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCC
Q 014112          150 VLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASP  187 (430)
Q Consensus       150 Ll~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p  187 (430)
                      ..   +      .|        .+|...|.|.......
T Consensus       107 ~~---g------~L--------r~G~~~l~lw~~~~~d  127 (159)
T cd08397         107 KD---G------TL--------RRGRQKLRVWPDVEAD  127 (159)
T ss_pred             CC---C------cE--------ecCCEEEEEEeCCCCC
Confidence            42   1      22        3788888887555543

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=92.52  E-value=0.32  Score=45.27  Aligned_cols=57  Identities=14%  Similarity=0.329  Sum_probs=29.9

Q ss_pred             CeEEeeeecCCCCCCeecceEEEEeCcCC-CceEEEEEEEEeeccc--cc--CceeEEEEEeCcc
Q 014112           90 NTVSTNIINGGGRNPVFNENLKLNVKTVE-SSLKCEIFMMSRVKNY--LE--DQLLGFTLVPLSE  149 (430)
Q Consensus        90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d-~~LkleV~v~v~Ded~--v~--DdlIG~a~VPLsd  149 (430)
                      ..+.|.+..+ .++|.|||+|.+.++... ...++  .|.+++-..  ..  +..+|.+.+||-+
T Consensus        59 ~~~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HL--lFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHL--LFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT--SS-EEEEEEEEEE-CCCCTTEEE--EEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             eEEEEEEEec-CCCCCccEEEEEEcCchhcccEEE--EEEEEeeccccccCccceeEEEEEEeee
Confidence            4667778776 599999999999998721 12222  233343221  11  3799999999988

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=92.12  E-value=0.85  Score=40.70  Aligned_cols=88  Identities=22%  Similarity=0.224  Sum_probs=50.5

Q ss_pred             CcEEEEEEeCCCC--C--eEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEEEEeecccc-cC----ceeEEE
Q 014112           77 DVYAKLCLTSDPE--N--TVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFMMSRVKNYL-ED----QLLGFT  143 (430)
Q Consensus        77 DPYVkVsL~~~p~--~--k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v~v~Ded~v-~D----dlIG~a  143 (430)
                      +.||.+.|.....  .  ...|+...-...++.|||.+.|.|.-.    +..|.+.|    +..+.. .+    ..||.+
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l----~~~~~~~~~~~~~~~lgw~   78 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTL----YGVDSKKKSKKKKVPLGWV   78 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEE----EEEECSTTT--EEEEEEEE
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEE----EEecCCCccccceeEEEEE
Confidence            4677777765431  1  336766654126999999988886542    33455544    443322 23    699999


Q ss_pred             EEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          144 LVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       144 ~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      .++|=+...         .|        .+|...|.| |....
T Consensus        79 n~~lFd~~~---------~L--------~~G~~~L~l-W~~~~  103 (142)
T PF00792_consen   79 NLPLFDYRG---------QL--------RQGPQKLSL-WPDEE  103 (142)
T ss_dssp             EEESB-TTS---------BB--------EEEEEEEE--EET-T
T ss_pred             EEEeECCCC---------cc--------cCCCEEEEE-EcCCC
Confidence            999877642         22        267777777 44443

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=91.63  E-value=0.4  Score=54.80  Aligned_cols=104  Identities=10%  Similarity=0.074  Sum_probs=75.3

Q ss_pred             CCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccccc-CceeEEEEEeCccccccC
Q 014112           76 QDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLE-DQLLGFTLVPLSEVLVKN  154 (430)
Q Consensus        76 ~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~-DdlIG~a~VPLsdLl~~~  154 (430)
                      .++|+++.|...  .-.+|....+-=.+|.|.+.|.+.+......+.+.+    .+.+..+ ..++|.+.+|.-.++. +
T Consensus       138 ~e~Ylt~~l~~~--~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~----~~~~~~G~s~~w~~v~~s~~~~~~-~  210 (887)
T KOG1329|consen  138 LENYLTVVLHKA--RYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRV----KGARVPGWSKRWGRVKISFLQYCS-G  210 (887)
T ss_pred             ccchheeeechh--hhhchhhhhcccccchhhhhccccccccccEEEEee----cCCccccceeEEEEeccchhhhhc-c
Confidence            489999999654  566888887755999999999988887655544444    7777667 8999999999999997 4


Q ss_pred             ceeeEEEEccCCCCCC-CCCcEEEEEEEEEccC
Q 014112          155 GKLEKEFSLSSTDLFH-SPAGFVQLSLAYAGAS  186 (430)
Q Consensus       155 ~~l~~~f~Lss~dl~~-~p~G~I~LsLsf~p~~  186 (430)
                      .....||++...+... ...-.+.+.+.|.+..
T Consensus       211 ~~~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~  243 (887)
T KOG1329|consen  211 HRIGGWFPILDNDGKPHQKGSNESLRLGFTPME  243 (887)
T ss_pred             ccccceeeeeccCCccccCCcccceEEeeEeec
Confidence            6667888775444322 2233566667777643

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=91.43  E-value=1.8  Score=40.24  Aligned_cols=56  Identities=18%  Similarity=0.374  Sum_probs=35.1

Q ss_pred             eEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc------ccCceeEEEEEeCcc
Q 014112           91 TVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY------LEDQLLGFTLVPLSE  149 (430)
Q Consensus        91 k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~------v~DdlIG~a~VPLsd  149 (430)
                      .++|-+ ... ++|.|||+|++.++.... -..-|+|.+++-..      -....+|.+.+||-+
T Consensus        54 ~~~sv~-~~~-k~p~f~deiKi~LP~~l~-~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          54 EYTSVV-YYH-KNPVFNDEIKIQLPADLT-PQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eEEEEE-EcC-CCCCCceeEEEecCCccC-CCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            444444 443 999999999999975211 11223344454321      136799999999986

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=91.31  E-value=0.7  Score=44.49  Aligned_cols=57  Identities=11%  Similarity=0.152  Sum_probs=37.1

Q ss_pred             CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccc--c---CceeEEEEEeCc
Q 014112           90 NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYL--E---DQLLGFTLVPLS  148 (430)
Q Consensus        90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v--~---DdlIG~a~VPLs  148 (430)
                      ..++|-|... ..+|.|||++++.|+.. ..-..-|.|.++..-.-  +   ...+|.+.+||=
T Consensus        53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~-~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQ-VDKPKWFETFKVAIPIE-DFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEee-cCCCCCceeEEEecChh-hCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            4778888776 59999999999999862 11112223333432111  2   368999999985

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=90.94  E-value=0.61  Score=44.62  Aligned_cols=57  Identities=21%  Similarity=0.314  Sum_probs=37.0

Q ss_pred             CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc--cc-CceeEEEEEeCc
Q 014112           90 NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY--LE-DQLLGFTLVPLS  148 (430)
Q Consensus        90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~--v~-DdlIG~a~VPLs  148 (430)
                      ..++|-|... ..+|.|||++++.|+.. ..-..-|.|.++..-.  -+ ...+|.+.+||-
T Consensus        53 se~~S~V~yH-~~~P~W~EtiKi~lP~~-~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYH-NNSPRWNETIKLPIPID-KFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEc-CCCCCCceeEEEecChh-hCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            4678888886 59999999999999862 2112222232243211  11 278999999984

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=90.61  E-value=3.4  Score=42.89  Aligned_cols=121  Identities=16%  Similarity=0.233  Sum_probs=82.9

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC--------CCceEEEEEEE
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV--------ESSLKCEIFMM  128 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~--------d~~LkleV~v~  128 (430)
                      +-|.|+++|+.+..   -+....+...+.+   ....|-.+.. .-.|.||-.+.+.+...        ...+++++  +
T Consensus         2 ivl~i~egr~F~~~---~~~~~vv~a~~ng---~~l~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c--~   72 (340)
T PF12416_consen    2 IVLSILEGRNFPQR---PRHPIVVEAKFNG---ESLETDPVPH-TESPQFNTELAWECDRKALKQHRLQRTPIKLQC--F   72 (340)
T ss_pred             EEEEEecccCCCCC---CCccEEEEEEeCC---ceeeecCCCC-CCCceeecceeeeccHHHHHHhhccCCceEEEE--E
Confidence            56899999999876   3578888889977   6888887765 79999999988877651        11355554  2


Q ss_pred             EeecccccCceeEEEEEeCccc---cccCc-eeeEEEEccCC-CCCCCCCcEEEEEEEEEccC
Q 014112          129 SRVKNYLEDQLLGFTLVPLSEV---LVKNG-KLEKEFSLSST-DLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       129 v~Ded~v~DdlIG~a~VPLsdL---l~~~~-~l~~~f~Lss~-dl~~~p~G~I~LsLsf~p~~  186 (430)
                      -.|......+.||.+.+||..+   ..++. .-.+||+|.+. ..+.+.+=+|.|.|......
T Consensus        73 a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~  135 (340)
T PF12416_consen   73 AVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS  135 (340)
T ss_pred             EecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence            2232233678999999999999   44222 33489999754 11233345677777776654

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=88.81  E-value=3.1  Score=35.91  Aligned_cols=86  Identities=15%  Similarity=0.182  Sum_probs=57.6

Q ss_pred             CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecccccCceeEEEEEeCcccccc
Q 014112           74 HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVK  153 (430)
Q Consensus        74 gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~  153 (430)
                      |-.+..|.+.|...  ...+|.--.  -.+..|+++|.|.+... ..|++.|  +.+|.    -.+.|...+-|.+... 
T Consensus         7 ~~~eV~avLklDn~--~VgqT~Wk~--~s~q~WDQ~Fti~LdRs-RELEI~V--ywrD~----RslCav~~lrLEd~~~-   74 (98)
T cd08687           7 GCSEVSAVLKLDNT--VVGQTQWKP--KSNQAWDQSFTLELERS-RELEIAV--YWRDW----RSLCAVKFLKLEDERH-   74 (98)
T ss_pred             cccceEEEEEEcCe--EEeeccccc--cccccccceeEEEeecc-cEEEEEE--EEecc----hhhhhheeeEhhhhcc-
Confidence            33788999999642  456666543  36889999999999873 2344444  33443    3578888888888443 


Q ss_pred             CceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          154 NGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       154 ~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                      +    ...+|       .|+|.+..++.|
T Consensus        75 ~----~~~~l-------epqg~l~~ev~f   92 (98)
T cd08687          75 E----VQLDM-------EPQLCLVAELTF   92 (98)
T ss_pred             c----ceecc-------ccccEEEEEEEe
Confidence            1    12233       389999999998

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=86.96  E-value=3.1  Score=35.20  Aligned_cols=59  Identities=20%  Similarity=0.103  Sum_probs=36.9

Q ss_pred             EEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCc
Q 014112           57 LEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKT  116 (430)
Q Consensus        57 L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~  116 (430)
                      +.+++..++++.-.......|.||++.|-....   ....|+.. .....+.|||-+.|+|.-
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i   74 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQI   74 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCch
Confidence            556677766665332222248999998876431   13355543 335669999999998665

Outlier of C2 family.

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=85.78  E-value=5.6  Score=34.68  Aligned_cols=86  Identities=19%  Similarity=0.242  Sum_probs=44.6

Q ss_pred             CeEEeeeecCCCCCCeecceEEEEeCcCCC--------ceEEEEEEEEeecccccCceeEEEEEeCccccccCc-eeeEE
Q 014112           90 NTVSTNIINGGGRNPVFNENLKLNVKTVES--------SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNG-KLEKE  160 (430)
Q Consensus        90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d~--------~LkleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~-~l~~~  160 (430)
                      +.+.|.++.  |.||.+|-+-+|.|.-.+.        .+.+|||-    .-..+-..||.+.++|.+++...+ ++...
T Consensus        11 Etq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhq----a~g~d~~tla~~~i~l~~ll~~~~~~i~~~   84 (107)
T PF11618_consen   11 ETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQ----ALGSDFETLAAGQISLRPLLESNGERIHGS   84 (107)
T ss_dssp             --EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEE----E-SS-EEEEEEEEE--SHHHH--S--EEEE
T ss_pred             eeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEe----eccCCeEEEEEEEeechhhhcCCCceEEEE
Confidence            577888887  6999999998888775322        35666632    222247899999999999997533 45555


Q ss_pred             EEccCCCCCCCCCcEEEEEEEEE
Q 014112          161 FSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       161 f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                      -.|.+..  +..-|.|.+.++..
T Consensus        85 ~~l~g~~--~~~~g~l~y~~rl~  105 (107)
T PF11618_consen   85 ATLVGVS--GEDFGTLEYWIRLR  105 (107)
T ss_dssp             EEE-BSS--S-TSEEEEEEEEEE
T ss_pred             EEEeccC--CCeEEEEEEEEEec
Confidence            5554332  33678888877754

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=81.82  E-value=2.8  Score=43.49  Aligned_cols=118  Identities=18%  Similarity=0.147  Sum_probs=72.3

Q ss_pred             cceEEEEEEEeccCCCCCCC--CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           53 FIGVLEVYIHQARDIHNICI--YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di--~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ..|+|-|+++.+|+|+-..-  .-.-+-||++...  ..++.||++-. ++.-=.|.|+|+.++... .++.+  .++.+
T Consensus        49 ~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d--rqh~aRt~vrs-~~~~f~w~e~F~~Dvv~~-~vl~~--lvySW  122 (442)
T KOG1452|consen   49 STGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD--RQHPARTRVRS-SGPGFAWAEDFKHDVVNI-EVLHY--LVYSW  122 (442)
T ss_pred             ccceEEEEEecccccccChhccCceeeeeeeeeec--ccCcccccccc-CCCCccchhhceeecccc-eeeeE--EEeec
Confidence            36899999999999985433  3356889998764  44677887755 367778999999998863 23333  23333


Q ss_pred             ecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          131 VKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       131 Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      +. -.+.++.-...+.+.-+..  ..-.+.|.|.-     .|+|.+-+.|.|.-
T Consensus       123 ~p-q~RHKLC~~g~l~~~~v~r--qspd~~~Al~l-----ePrgq~~~r~~~~D  168 (442)
T KOG1452|consen  123 PP-QRRHKLCHLGLLEAFVVDR--QSPDRVVALYL-----EPRGQPPLRLPLAD  168 (442)
T ss_pred             Cc-hhhccccccchhhhhhhhh--cCCcceeeeec-----ccCCCCceecccCC
Confidence            32 1245554444454444443  22233444431     36787777776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	430
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-14
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-09
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-04
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	7e-09
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	1e-08
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-08
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-05
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	3e-07
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	5e-07
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	8e-07
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-06
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	1e-06
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	1e-06
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-06
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	3e-06
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	7e-06
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	9e-06
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-05
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-05
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	4e-05
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	5e-05
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	6e-05
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-04
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-04
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	1e-04
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-04
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	4e-04
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-04
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	4e-04
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	6e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 15/138 (10%)

Query: 54  IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
            G LEV +  A+ + +    +  D Y +L   +       +N+  G G  P +NE     
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ---DQKSNVAEGMGTTPEWNETFIFT 65

Query: 114 VKTVESSLKCEIF---MMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFH 170
           V    + LK +IF   + +       D  +G   +PL  V V+       +++   +   
Sbjct: 66  VSEGTTELKAKIFDKDVGTE------DDAVGEATIPLEPVFVEGSIPPTAYNVVKDE--- 116

Query: 171 SPAGFVQLSLAYAGASPD 188
              G + ++L++  + P 
Sbjct: 117 EYKGEIWVALSFKPSGPS 134

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 31/134 (23%), Positives = 49/134 (36%), Gaps = 13/134 (9%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
             L V I QA ++  + +    D Y K+ L  D +    T +      NPVFNE     V
Sbjct: 19  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFKV 77

Query: 115 KTVE---SSLKCEIF---MMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL 168
              E    +L   ++     S+        ++G   VP++ V   +   E     S+   
Sbjct: 78  PYSELAGKTLVMAVYDFDRFSK------HDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKE 131

Query: 169 FHSPAGFVQLSLAY 182
                G +  SL Y
Sbjct: 132 EQEKLGDICFSLRY 145

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 9/101 (8%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNENLKL 112
           G L V I +A+++  + +    D Y K+ L  + +      T I      NP +NE+   
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK-KNTLNPYYNESFSF 208

Query: 113 NVKTVE---SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
            V   +     +   +    ++    ++  +G   V  +  
Sbjct: 209 EVPFEQIQKVQVVVTVLDYDKIG---KNDAIGKVFVGYNST 246

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 54.1 bits (130), Expect = 7e-09
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 12/137 (8%)

Query: 54  IGVLEVYIHQARDIHNICIYHKQDVYAKLCL---TSDPENTVSTNIINGGGRNPVFNENL 110
             V+ V +     +    I    D Y ++ L    S    +V T  I     NP +NE +
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKS-LNPKWNEEI 65

Query: 111 KLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGK-----LEKEFSLSS 165
              V      +  E+F  +R+     D  LG   VPL  +  +N +       K+F L  
Sbjct: 66  LFRVLPQRHRILFEVFDENRLTR---DDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHP 122

Query: 166 TDLFHSPAGFVQLSLAY 182
                   G+++L + Y
Sbjct: 123 RSHKSRVKGYLRLKMTY 139

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 18/139 (12%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVS---TNIINGGGRNPVFNENLK 111
            ++ V +     +    I    D Y ++ L       ++   T  I     NP +NE + 
Sbjct: 20  RIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKS-LNPKWNEEIL 78

Query: 112 LNVKTVESSLKCEIF---MMSRVKNYLEDQLLGFTLVPLSEVLVKNGK-----LEKEFSL 163
             V   +  L  E+F    ++R      D  LG   VPL  +  +N +       K+F L
Sbjct: 79  FRVHPQQHRLLFEVFDENRLTR------DDFLGQVDVPLYPLPTENPRLERPYTFKDFVL 132

Query: 164 SSTDLFHSPAGFVQLSLAY 182
                     G+++L + Y
Sbjct: 133 HPRSHKSRVKGYLRLKMTY 151

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 54.5 bits (131), Expect = 2e-08
 Identities = 30/135 (22%), Positives = 47/135 (34%), Gaps = 14/135 (10%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
             L V I QA D+         D Y K+ L  D +    T +      NP+FNE  + +V
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKT-LNPIFNETFQFSV 78

Query: 115 KTVE---SSLKCEIF---MMSRVKNYLEDQLLGFTLVP-LSEVLVKNGKLEKEFSLSSTD 167
              E     L   ++     SR        L+G  ++  L E+  +         +    
Sbjct: 79  PLAELAQRKLHFSVYDFDRFSR------HDLIGQVVLDNLLELAEQPPDRPLWRDILEGG 132

Query: 168 LFHSPAGFVQLSLAY 182
              +  G +  SL Y
Sbjct: 133 SEKADLGELNFSLCY 147

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNENLKL 112
           G+L V I +A ++  + +    D Y K  L S+        T+I      NP +NE L  
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVF 210

Query: 113 NVKTVE---SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
           +V         L   +     +     ++++G   V     
Sbjct: 211 DVAPESVENVGLSIAVVDYDCIG---HNEVIGVCRVGPEAA 248

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 15/136 (11%)

Query: 53  FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKL 112
           +   + + +  A+ +         D Y  + +         T  I G   NPV+ EN   
Sbjct: 15  WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKT---KKRTKTIYGN-LNPVWEENFHF 70

Query: 113 NVKTVESSLKCEIF--------MMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLS 164
                   +K  +          + +      D  LG T++ +  +   +G+++  ++L 
Sbjct: 71  ECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL---SGEMDVWYNLD 127

Query: 165 STDLFHSPAGFVQLSL 180
                 + +G ++L +
Sbjct: 128 KRTDKSAVSGAIRLHI 143

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVS---TNIINGGGRNPVFNENLK 111
               + I Q  ++  +     Q V  ++ +    E+T     T  ++      VFNE   
Sbjct: 43  KQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDTLVFNEVFW 101

Query: 112 LNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSS 165
           +++       K     +        ++ LG   + L+EV     +  + ++L S
Sbjct: 102 VSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 47.3 bits (113), Expect = 8e-07
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 16/134 (11%)

Query: 52  NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLK 111
             +G+L+V + +A D+       K D +  L L +D    + T+ +     NP +N+   
Sbjct: 10  KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGND---RLQTHTVYKN-LNPEWNKVFT 65

Query: 112 LNVKTVESSLKCEIF---MMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL 168
             +K +   L+  +F                LG   +PL    +++G+    + L + DL
Sbjct: 66  FPIKDIHDVLEVTVFDEDGDKP------PDFLGKVAIPLLS--IRDGQ-PNCYVLKNKDL 116

Query: 169 FHSPAGFVQLSLAY 182
             +  G + L +  
Sbjct: 117 EQAFKGVIYLEMDL 130

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 21/142 (14%)

Query: 53  FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP-------ENTVSTNIINGGGRNPV 105
           F G L V I +A  +       +  ++ K     DP       +  V           P 
Sbjct: 27  FNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPT 86

Query: 106 FNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVL---VKNGKLEKEFS 162
           +NE    NV      L+  +F  + +     D  +    +   E+L     +   E    
Sbjct: 87  YNEEFCANVTD-GGHLELAVFHETPLG---YDHFVANCTLQFQELLRTTGASDTFEGWVD 142

Query: 163 LSSTDLFHSPAGFVQLSLAYAG 184
           L        P G V + +   G
Sbjct: 143 L-------EPEGKVFVVITLTG 157

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 22/129 (17%)

Query: 55  GVLEVYIHQARDIHNIC---IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLK 111
               V + +A  +       +    D Y +L +++ P++   T   N    NPV+NE  +
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-INPVWNETFE 61

Query: 112 LNVKTVESS-LKCEIFMMSRVKNYLEDQLLGFTLVPLSEVL-------------VKNGKL 157
             +   + + L+  +       NY+ D+ LG     +S +              V    L
Sbjct: 62  FILDPNQENVLEITLMD----ANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 117

Query: 158 EKEFSLSST 166
           E    ++S+
Sbjct: 118 EMSLEVASS 126

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 12/121 (9%)

Query: 55  GVLEVYIHQARDI----HNICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNE 108
            VL ++I + + +       C     D Y K+ L  +        T  +    R+P F+E
Sbjct: 27  RVLLLHIIEGKGLISKQPGTC-----DPYVKISLIPEDSRLRHQKTQTVPDC-RDPAFHE 80

Query: 109 NLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL 168
           +    V+  +   +  + + +R     +  L+G     +  +L  + ++   + L    L
Sbjct: 81  HFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHL 140

Query: 169 F 169
            
Sbjct: 141 G 141

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 32/149 (21%)

Query: 53  FIGVLEVYIHQARDIHNICIYHKQ-----------DVYAKLCLTSDPENTVSTNIINGGG 101
           F G+L++ I +A  +       +            D Y  L +  D      T       
Sbjct: 4   FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQ-KT 60

Query: 102 RNPVFNENLKLNVKTVESSLKCEIF---MMSRVKNYLEDQLLGFTLVPLSEVLVKNGK-L 157
            +P +++    +V      ++  +F    +        D  +    +   E+L    +  
Sbjct: 61  NSPAWHDEFVTDVCNGR-KIELAVFHDAPIGY------DDFVANCTIQFEELLQNGSRHF 113

Query: 158 EKEFSLSSTDLFHSPAGFVQLSLAYAGAS 186
           E    L        P G V + +  +G+S
Sbjct: 114 EDWIDL-------EPEGKVYVIIDLSGSS 135

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 55  GVLEVYIHQARDIHNICIYHKQ-DVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
               V I +AR +  +       D Y K+ +  + ++ V T ++     +P F+E     
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT-LDPAFDETFTFY 80

Query: 114 VKTVES----SLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSS 165
                     +L   I    R   +  D ++G  L+PLS + +  GK+     + S
Sbjct: 81  GIPYTQIQELALHFTILSFDR---FSRDDIIGEVLIPLSGIELSEGKMLMNREIIS 133

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 10/149 (6%)

Query: 47  SNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVF 106
           S         L++ +  A+   N   +     Y ++ +      +  T   N    +P +
Sbjct: 28  SMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQ---SKKTEKCN-NTNSPKW 83

Query: 107 NENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKL--EKEFSLS 164
            + L + V T  S L   ++    +K+   D LLG   + + E L  N     E   +L 
Sbjct: 84  KQPLTVIV-TPVSKLHFRVWSHQTLKS---DVLLGTAALDIYETLKSNNMKLEEVVVTLQ 139

Query: 165 STDLFHSPAGFVQLSLAYAGASPDVMAIP 193
                        LS+   G   +   + 
Sbjct: 140 LGGDKEPTETIGDLSICLDGLQLESEVVT 168

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
             L V I QA ++  + +    D Y K+ L  D +    T +      NPVFNE     V
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFKV 92

Query: 115 KTVE---SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGK 156
              E    +L   ++   R     +  ++G   VP++ V   +  
Sbjct: 93  PYSELGGKTLVMAVYDFDRFS---KHDIIGEFKVPMNTVDFGHVT 134

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
             L V I +A+++         D + K+ L  D ++ + T +      NP +NE      
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN-LNPHWNETFLFEG 84

Query: 115 KTVE----SSLKCEIF---MMSRVKNYLEDQLLGFTLVPLSEV 150
              E      L  ++      SR      +  +G   +PL++V
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSR------NDPIGEVSIPLNKV 121

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
             L V I QA ++  + +    D Y K+ L  D +    T +      NPVFNE     V
Sbjct: 42  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFKV 100

Query: 115 KTVE---SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNG 155
              E    +L   ++   R     +  ++G   VP++ V   + 
Sbjct: 101 PYSELGGKTLVMAVYDFDRFS---KHDIIGEFKVPMNTVDFGHV 141

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 15/135 (11%)

Query: 54  IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
            G+L V +  A +I     + K D    +    +      T  ++    NPV+NE L+ +
Sbjct: 6   SGMLRVIVESASNIPKT-KFGKPDPIVSVIFKDE---KKKTKKVDNE-LNPVWNEILEFD 60

Query: 114 VKTVE----SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSST--D 167
           ++ +     SSL   +     +     ++L+G   V L + L  +      + L S   +
Sbjct: 61  LRGIPLDFSSSLGIIVKDFETIGQ---NKLIGTATVALKD-LTGDQSRSLPYKLISLLNE 116

Query: 168 LFHSPAGFVQLSLAY 182
                   + L + Y
Sbjct: 117 KGQDTGATIDLVIGY 131

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 14/112 (12%)

Query: 55  GVLEVYIHQARDIHNICIYHKQ-------DVYAKLCLTSDPENTVSTNIINGGGRNPVFN 107
             L V + +ARD+     +          + Y K+CL  D +N+  T +     + PVF 
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKT-QKPVFE 84

Query: 108 ENLKLNVKTVE---SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGK 156
           E     +  +E    +L   +    +   +    ++G   VPL EV +  G 
Sbjct: 85  ERYTFEIPFLEAQRRTLLLTVVDFDK---FSRHCVIGKVSVPLCEVDLVKGG 133

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 44.2 bits (103), Expect = 6e-05
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 56  VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVK 115
           VL+++I +AR++       K+  Y +LCL        ++   +  G    + E+ + N  
Sbjct: 12  VLKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNL 66

Query: 116 TVESSLKCEIFMMSRVKNYLE-DQLLGFTLVPLSEV 150
               +L+  ++  S  K   +    +G   VP++ +
Sbjct: 67  PAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 43.8 bits (102), Expect = 1e-04
 Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 55  GVLEVYIHQARDIHNIC---IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLK 111
               V + +A  +       +    D Y +L +++ P++   T   N    NPV+NE  +
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFE 76

Query: 112 LNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
             +   + ++  EI +M    NY+ D+ LG     +S +
Sbjct: 77  FILDPNQENV-LEITLMD--ANYVMDETLGTATFTVSSM 112

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 15/107 (14%)

Query: 55  GVLEVYIHQAR--DIHNICIYHKQDVYAKLCLTSDPENT-VSTNIINGGGRNPVFNENLK 111
             L V   +A   +    C     D Y +  + +   +    T +      +  + E L 
Sbjct: 26  AELFVTRLEAVTSNHDGGC-----DCYVQGSVANRTGSVEAQTALKKRQ-LHTTWEEGLV 79

Query: 112 LNVKTVE---SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNG 155
           L +   E   ++L   +    R   +    + G   + L    V  G
Sbjct: 80  LPLAEEELPTATLTLTLRTCDR---FSRHSVAGELRLGLDGTSVPLG 123

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 12/109 (11%)

Query: 46  MSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPV 105
           +S  GG  + +L V + +A+         K + Y  L +    +N  ST I   G   P 
Sbjct: 5   ISGGGGGILSLLCVGVKKAKFDGAQ---EKFNTYVTLKV----QNVESTTIAVRGS-QPS 56

Query: 106 FNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKN 154
           + ++    +  ++  L  E++     K  + D ++G   +PL  +   N
Sbjct: 57  WEQDFMFEINRLDLGLTVEVWN----KGLIWDTMVGTVWIPLRTIRQSN 101

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 12/110 (10%)

Query: 51  GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENL 110
           G  + +L V + +A+         K + Y  L +    +N  ST I   G   P + ++ 
Sbjct: 1   GGVMSLLCVGVKKAKFDGAQ---EKFNTYVTLKV----QNVKSTTIAVRG-SQPSWEQDF 52

Query: 111 KLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKE 160
              +  ++  L  E++     K  + D ++G   +PL  +   N +   E
Sbjct: 53  MFEINRLDLGLTVEVWN----KGLIWDTMVGTVWIPLRTIRQSNEEGPGE 98

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 17/110 (15%)

Query: 55  GVLEVYIHQARDIH----NICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNE 108
           G L + +   +D+             + Y K  L  D   T    T I     RNP FNE
Sbjct: 20  GTLFIMVMHIKDLVTEDGADP-----NPYVKTYLLPDTHKTSKRKTKISRKT-RNPTFNE 73

Query: 109 NLKLNVKTVESSLKCEIFMMSRVKNY---LEDQLLGFTLVPLSEVLVKNG 155
            L  +  + E+  + E+ +   V +     E+  LG   +PL +  +   
Sbjct: 74  MLVYSGYSKETLRQRELQLS--VLSAESLRENFFLGGITLPLKDFNLSKE 121

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNENLKL 112
           G L V I +A+++  + +    D Y K+ L  + +      T I      NP +NE+   
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSF 83

Query: 113 NVK 115
            V 
Sbjct: 84  EVP 86

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 17/101 (16%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNENLKL 112
             + V I +AR++  + I    D Y K+ L    +      T        NP+FNE+   
Sbjct: 16  NSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK-RNLNPIFNESFAF 74

Query: 113 NVKTVE---SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
           ++ T +   +++   +    ++     + ++G   +     
Sbjct: 75  DIPTEKLRETTIIITVMDKDKLS---RNDVIGKIYLSWKSG 112

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNENLKL 112
            VL V +  A+++  +      D Y KL L  DP++     T  I     NP +NE  + 
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS-LNPEWNETFRF 89

Query: 113 NVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
            +K  +   +  + +         +  +G     +SE+
Sbjct: 90  QLKESDKDRRLSVEIWDWDL-TSRNDFMGSLSFGISEL 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	430
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.88
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.88
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.88
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.87
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.87
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.86
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.86
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.85
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.84
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.83
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.79
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.79
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.78
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.78
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.77
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.77
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.77
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.77
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.77
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.76
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.76
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.76
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.76
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.75
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.75
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.74
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.74
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.74
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.74
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.73
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.72
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.72
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.71
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.71
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.71
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.7
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.68
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.66
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.66
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.64
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.61
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.59
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.57
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.49
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.47
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.4
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.4
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.39
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.32
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.71
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.58
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	94.4
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	93.54
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	93.12
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	92.63
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	86.01

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.88  E-value=1.7e-22  Score=173.26  Aligned_cols=127  Identities=23%  Similarity=0.362  Sum_probs=107.5

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ..+.+.|+|+|++|++|+..+..++.||||+|++.+   .++||+++++++.||+|||+|.|.+......|+++|    +
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V----~   78 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT---QDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKI----F   78 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS---CEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEE----C
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECC---ccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEE----E
Confidence            356899999999999999999999999999999976   578999998558999999999999987545566655    8


Q ss_pred             ecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCC
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASP  187 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p  187 (430)
                      |++.+ +|++||.+.|+|.++...+.....||+|. .  .....|.|+|+|+|.|..+
T Consensus        79 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~-~--~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           79 DKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV-K--DEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             CSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE-E--TTEEEEEEEEEEEEEECCS
T ss_pred             ECCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee-c--CCccCEEEEEEEEEEeCCC
Confidence            98877 69999999999999965344567899996 2  2346899999999999864

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.88  E-value=5.1e-22  Score=173.80  Aligned_cols=129  Identities=23%  Similarity=0.321  Sum_probs=101.0

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEE
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFM  127 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v  127 (430)
                      ....+.|+|+|++|++|+..+..+++||||+|++.+...   .++||+++++ +.||+|||+|.|.+......|+++|  
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~l~~~V--   92 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHPQQHRLLFEV--   92 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCCCCEEEEEEECTTTCEEEEEE--
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccC-CCCCCCCCEEEEEecCCCCEEEEEE--
Confidence            567799999999999999999999999999999985432   5889999998 7999999999999987555566655  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCce-----eeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGK-----LEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~-----l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                        +|++.+ +|++||.+.|+|.++..+...     ..+||+|..+.......|.|+|+++|.|
T Consensus        93 --~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           93 --FDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             --EECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             --EECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence              888887 699999999999999875322     2589999754433457899999999976

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.88  E-value=7e-22  Score=177.84  Aligned_cols=130  Identities=24%  Similarity=0.338  Sum_probs=101.6

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEE
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFM  127 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v  127 (430)
                      +...|.|+|+|++|++|+..+..+++||||+|++.+...   .++||+++++ +.||+|||+|.|.|......|+++|  
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~L~~~V--   80 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWNEEILFRVLPQRHRILFEV--   80 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSS-CSSCEEEEEEEEEECTTTCEEEEEE--
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECC-CCCCcccceEEEEEcCCCCEEEEEE--
Confidence            456899999999999999999999999999999986432   4789999997 7999999999999987555566655  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceee-----EEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLE-----KEFSLSSTDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~-----~~f~Lss~dl~~~p~G~I~LsLsf~p~  185 (430)
                        +|.+.+ .|++||.+.|+|.++..+....+     +||+|..+.......|.|+|+|.|.|.
T Consensus        81 --~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           81 --FDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             --EECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             --EECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence              888877 69999999999999997433322     799997655445578999999999987

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.87  E-value=1.9e-21  Score=169.21  Aligned_cols=127  Identities=16%  Similarity=0.276  Sum_probs=103.1

Q ss_pred             ccCCCCccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEE
Q 014112           46 MSNLGGNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEI  125 (430)
Q Consensus        46 ~~~~~~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV  125 (430)
                      +..+ ....|.|+|+|++|++|+..+..+++||||++++..   .+++|+++++ +.||+|||+|.|.+......|+++|
T Consensus         9 ~~~~-~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v   83 (148)
T 3kwu_A            9 LDGT-SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK---TKKRTKTIYG-NLNPVWEENFHFECHNSSDRIKVRV   83 (148)
T ss_dssp             -------CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT---EEEECCCCCS-CSSCEEEEEEEEEECSTTCEEEEEE
T ss_pred             cccc-cccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC---EEEECCccCC-CCCCCcccEEEEEecCCCCEEEEEE
Confidence            3444 556899999999999999999999999999999954   6899999997 6999999999999987655666665


Q ss_pred             EEEEeecccc------------cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          126 FMMSRVKNYL------------EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       126 ~v~v~Ded~v------------~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                          +|++.+            .|++||.+.|||.++.   +....||+|..........|.|+|+|+|..
T Consensus        84 ----~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~---~~~~~w~~L~~~~~~~~~~G~i~l~l~~e~  147 (148)
T 3kwu_A           84 ----LDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLS---GEMDVWYNLDKRTDKSAVSGAIRLHISVEI  147 (148)
T ss_dssp             ----EECCCSHHHHHHTTTSSCSSEEEEEEEEEGGGCC---SEEEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred             ----EECCCCccccccccccCCCCccEEEEEEEHHHCc---CCCCEEEEcccCCCCCCCceEEEEEEEEEe
Confidence                777763            6999999999999983   345799999755444457899999999964

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.87  E-value=1.1e-21  Score=168.29  Aligned_cols=123  Identities=20%  Similarity=0.269  Sum_probs=105.4

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ..+.+.|+|+|++|++|+..+..+++||||++++.+   +++||+++++ +.||+|||+|.|.+......|+++|    +
T Consensus         9 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~i~V----~   80 (133)
T 2ep6_A            9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYK-NLNPEWNKVFTFPIKDIHDVLEVTV----F   80 (133)
T ss_dssp             CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT---EEEECCCCSS-CSSCCCCEEEEEEESCTTCEEEEEE----E
T ss_pred             cCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC---EEEEeeeecC-CCCCccccEEEEEecCCCCEEEEEE----E
Confidence            456899999999999999999999999999999976   5889999998 7999999999999987655566665    8


Q ss_pred             ecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      |++.+ .|++||.+.|+|.++..+ .  .+||+|........+.|.|+|+++|..
T Consensus        81 d~d~~~~~~~lG~~~i~l~~l~~~-~--~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           81 DEDGDKPPDFLGKVAIPLLSIRDG-Q--PNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EEETTEEEEECCBCEEEGGGCCSS-C--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             ECCCCCCCCeeEEEEEEHHHccCC-C--ceEEEeecCCCCCccceEEEEEEEEEe
Confidence            88877 699999999999999752 3  489999765544457899999999864

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=4.5e-21  Score=165.12  Aligned_cols=124  Identities=20%  Similarity=0.318  Sum_probs=102.0

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIFM  127 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~v  127 (430)
                      ...|.|+|+|++|+||+..+. ++.||||++++.+   +++||+++++ +.||+|||+|.|.+...    ...|+++|  
T Consensus         4 ~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~---~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~~l~i~V--   76 (140)
T 2dmh_A            4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD---EKKKTKKVDN-ELNPVWNEILEFDLRGIPLDFSSSLGIIV--   76 (140)
T ss_dssp             CBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS---CEEECCCCCS-CSSCEEEEEEEEECSSCCCCTTCEEEEEE--
T ss_pred             CCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC---EeEEeeeecC-CCCCccCcEEEEEecccccCCCCEEEEEE--
Confidence            346899999999999999998 9999999999986   5899999987 69999999999999753    23455554  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEE---ccCCCCCCCCCcEEEEEEEEEccC
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFS---LSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~---Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                        +|++.+ .|++||.+.|+|.++.. ++....||.   |.... .....|.|+|+|+|.|..
T Consensus        77 --~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~w~~l~~l~~~~-~~~~~G~l~l~~~~~p~~  135 (140)
T 2dmh_A           77 --KDFETIGQNKLIGTATVALKDLTG-DQSRSLPYKLISLLNEK-GQDTGATIDLVIGYDPPS  135 (140)
T ss_dssp             --EETTCSSSCCCCEEEEEEGGGTCS-SSCEEEEEEEEEEECTT-CCEEEEEEEEEEEECCCB
T ss_pred             --EECCCCCCCceEEEEEEEHHHhcc-CCCceeEEeeeeccCCC-CCCCCCEEEEEEEEECCC
Confidence              888887 69999999999999986 466678887   54322 123469999999999865

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.86  E-value=2.4e-21  Score=163.69  Aligned_cols=118  Identities=23%  Similarity=0.343  Sum_probs=96.6

Q ss_pred             ceEEEEEEEeccCCCCC---CCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNI---CIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIFMMS  129 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~---di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~v~v  129 (430)
                      .|.|+|+|++|++|+..   +..++.||||++++.+.+..++||+++++ +.||+|||+|.|.+.. ....|+++|    
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~l~i~V----   76 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITL----   76 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCEEEEEE----
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCC-CCCCcccceEEEEecCCCCCEEEEEE----
Confidence            58999999999999984   67799999999999876567999999997 7999999999999964 334555555    


Q ss_pred             eecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          130 RVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       130 ~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                      +|++.++|++||.+.|+|.++.. +.....||+|..     ...|.|+|+|+.
T Consensus        77 ~d~d~~~~~~iG~~~i~l~~l~~-~~~~~~~~~L~~-----~~~g~i~~~le~  123 (126)
T 1rlw_A           77 MDANYVMDETLGTATFTVSSMKV-GEKKEVPFIFNQ-----VTEMVLEMSLEV  123 (126)
T ss_dssp             EECCSSCCEEEEEEEEEGGGSCT-TCEEEEEEEETT-----TEEEEEEEEEEC
T ss_pred             EECCCCCCceeEEEEEEHHHccC-CCcEEEEEEcCC-----CceEEEEEEEEe
Confidence            88887789999999999999986 577789999963     234555555543

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.85  E-value=2.2e-21  Score=167.46  Aligned_cols=120  Identities=18%  Similarity=0.266  Sum_probs=99.9

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCC-----------CCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCc
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHK-----------QDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESS  120 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk-----------~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~  120 (430)
                      ...|.|+|+|++|+||+..+..++           +||||+|++.+.  ...+|+++++ +.||+|||+|.|.+... ..
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~--~~~~T~~~~~-t~nP~WnE~f~f~v~~~-~~   78 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDS--RIGQTATKQK-TNSPAWHDEFVTDVCNG-RK   78 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTE--EEEECCCCSS-CSSCEEEEEEEEEEEEE-CE
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCe--EeeeeeEECC-CcCCccCCEEEEEecCC-CE
Confidence            357999999999999999887655           999999999542  4579999887 79999999999999764 44


Q ss_pred             eEEEEEEEEeecccc-cCceeEEEEEeCccccccC-ceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          121 LKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKN-GKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       121 LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~-~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      |+++|    +|++.+ +|++||.+.|+|.++...+ +..+.||.|.       ++|+|+|.|+|.+..
T Consensus        79 L~~~V----~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~-------~~G~i~l~l~~~~~~  135 (136)
T 1gmi_A           79 IELAV----FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-------PEGKVYVIIDLSGSS  135 (136)
T ss_dssp             EEEEE----EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB-------SSCEEEEEEEEEEEE
T ss_pred             EEEEE----EeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcC-------CCeEEEEEEEEEecC
Confidence            55555    888877 6999999999999999742 3557899985       699999999998764

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.84  E-value=4.7e-21  Score=173.08  Aligned_cols=119  Identities=21%  Similarity=0.244  Sum_probs=97.9

Q ss_pred             CccceEEEEEEEeccCCCCCCCC----------CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCc
Q 014112           51 GNFIGVLEVYIHQARDIHNICIY----------HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESS  120 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~----------gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~  120 (430)
                      ....|.|+|+|++|+||+..+..          +..||||+|.|.+.  +..||+++++ +.||+|||+|.|.|... ..
T Consensus        25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~--~~~kT~v~~k-tlnP~WNE~F~f~v~~~-~~  100 (157)
T 2fk9_A           25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQV--RVGQTSTKQK-TNKPTYNEEFCANVTDG-GH  100 (157)
T ss_dssp             CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTE--EEEECCCCSS-CSSCEEEEEEEEEEEEE-CE
T ss_pred             ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCE--eeEEeeecCC-CCCCccCcEEEEEcCCC-CE
Confidence            45689999999999999988732          56899999999653  4579999887 79999999999999763 34


Q ss_pred             eEEEEEEEEeecccc-cCceeEEEEEeCcccccc---CceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          121 LKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVK---NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       121 LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~---~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      |.++    ++|++.+ .|++||.+.|||.+|..+   ++..+.||+|.       ++|.|+|.|+|.+
T Consensus       101 L~~~----V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~-------~~G~i~l~l~~~g  157 (157)
T 2fk9_A          101 LELA----VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-------PEGKVFVVITLTG  157 (157)
T ss_dssp             EEEE----EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-------SSCEEEEEEEEC-
T ss_pred             EEEE----EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC-------CCcEEEEEEEEEC
Confidence            4444    4888877 599999999999999863   25678999995       5999999999853

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.83  E-value=1.1e-19  Score=155.55  Aligned_cols=122  Identities=14%  Similarity=0.206  Sum_probs=98.7

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecc
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKN  133 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded  133 (430)
                      ...|+|+|++|++|+..+..+++||||+|++.+. ..+++|+++++ +.||+|||+|.|.+.... .|.++|    +|++
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~-~~~~kT~v~~~-t~nP~wne~f~f~v~~~~-~l~~~v----~d~d   76 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS-GQCHSTDTVKN-TLDPKWNQHYDLYVGKTD-SITISV----WNHK   76 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT-CCEEECCCCSS-CSSCEEEEEEEEEEETTC-CEEEEE----EEGG
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC-CceEECCccCC-CCCCCccCEEEEEeCCCC-EEEEEE----EECC
Confidence            4789999999999999999999999999999653 37899999987 799999999999998753 355555    8888


Q ss_pred             ccc----CceeEEEEEeCccccccCceeeEEEEccCCCCC--CCCCcEEEEEEEE
Q 014112          134 YLE----DQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF--HSPAGFVQLSLAY  182 (430)
Q Consensus       134 ~v~----DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~--~~p~G~I~LsLsf  182 (430)
                      .+.    |++||.+.|||.++........+||+|......  ....|.|+|+|++
T Consensus        77 ~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           77 KIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             GTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence            773    899999999999984433444578999654211  2358999999986

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=2.5e-19  Score=154.90  Aligned_cols=107  Identities=19%  Similarity=0.207  Sum_probs=90.8

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc----CCCceEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT----VESSLKCEIFMM  128 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~----~d~~LkleV~v~  128 (430)
                      ..+.|+|+|++|++|+..+..+++||||++++.++...++||+++++ +.||+|||+|.|.+..    ....|+++|   
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V---   99 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKVVQRILYLQV---   99 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTT-CSSCCCCEEEEECSCCHHHHTTSEEEEEE---
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcC-CCCCccccEEEECccCHHHcccCEEEEEE---
Confidence            46899999999999999999999999999999866557999999986 7999999999998632    133455555   


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                       +|++.+ .|++||.+.|+|.++.. +.....||+|..
T Consensus       100 -~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L~~  135 (141)
T 2d8k_A          100 -LDYDRFSRNDPIGEVSIPLNKVDL-TQMQTFWKDLKP  135 (141)
T ss_dssp             -EECCSSSSCEEEEEEEEETTTSCT-TSCEEEEECCEE
T ss_pred             -EECCCCCCCcEEEEEEEEhhhhcC-CCCccEEEECcC
Confidence             888877 69999999999999987 456789999964

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.79  E-value=4.2e-19  Score=161.41  Aligned_cols=127  Identities=18%  Similarity=0.203  Sum_probs=100.6

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      ...+.|+|+|++|++|++.+.+++.||||+|++.+   .++||+++++ +.||+|||+|.|.|.. ...|.++|    +|
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~---~~~kT~v~~~-tlnP~Wne~f~f~v~~-~~~L~~~V----~D  103 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNN-TNSPKWKQPLTVIVTP-VSKLHFRV----WS  103 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT---EEEECCCCSS-CSSCEEEEEEEEEECT-TCEEEEEE----EE
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECC---EEeEccccCC-CCCCeECCEEEEEeCC-CCEEEEEE----EE
Confidence            35689999999999999555556699999999975   7999999997 7999999999999965 45566655    88


Q ss_pred             cccc-cCceeEEEEEeCccccccC-ce---eeEEEEccCCCCCCCCCcEEEEEEEEEccCC
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLVKN-GK---LEKEFSLSSTDLFHSPAGFVQLSLAYAGASP  187 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~~~-~~---l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p  187 (430)
                      ++.+ .|++||.+.|+|.++..+. +.   ...|+.|..........|+|.|.|+|.+.-+
T Consensus       104 ~d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~~  164 (173)
T 2nq3_A          104 HQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLES  164 (173)
T ss_dssp             CCSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC-
T ss_pred             CCCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecch
Confidence            8877 6999999999999998642 22   3579999754222245899999999997754

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.78  E-value=8.8e-19  Score=153.82  Aligned_cols=106  Identities=24%  Similarity=0.251  Sum_probs=91.3

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMS  129 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v  129 (430)
                      ..+.|+|+|++|+||+..+..+++||||+|++.++...++||+++++ +.||+|||+|.|.|...   ...|+++|    
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V----  114 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAV----  114 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEE----
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCC-CCCCcCcccEEEeecHHHcCCCEEEEEE----
Confidence            45899999999999999999999999999999865557899999998 79999999999998752   34555555    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      +|++.+ +|++||.+.|+|.++.. +...++||+|.
T Consensus       115 ~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L~  149 (152)
T 1rsy_A          115 YDFDRFSKHDIIGEFKVPMNTVDF-GHVTEEWRDLQ  149 (152)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGCCC-SSCEEEEEECB
T ss_pred             EECCCCCCCcEEEEEEEEchhccC-CCCcceEEECC
Confidence            888877 69999999999999986 46678999995

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.78  E-value=6.5e-19  Score=152.37  Aligned_cols=106  Identities=24%  Similarity=0.251  Sum_probs=91.3

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMS  129 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v  129 (430)
                      ..+.|+|+|++|++|+..+..++.||||++++.++...++||+++++ +.||+|||+|.|.|...   ...|+++|    
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V----  106 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAV----  106 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCS-CSSCEEEEEEEECCCHHHHTTCEEEEEE----
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcC-CCCCcCcCeEEEeecHhhcCCCEEEEEE----
Confidence            46899999999999999999999999999999766557999999997 79999999999998752   23455555    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                      +|++.+ .|++||.+.|+|.++.. +.....||+|.
T Consensus       107 ~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L~  141 (143)
T 3f04_A          107 YDFDRFSKHDIIGEFKVPMNTVDF-GHVTEEWRDLQ  141 (143)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGCCT-TSCEEEEEECB
T ss_pred             EeCCCCCCCceEEEEEEEHHHccC-CCCcceEEECc
Confidence            888877 69999999999999987 56778999995

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=2.9e-18  Score=147.72  Aligned_cols=109  Identities=21%  Similarity=0.333  Sum_probs=90.1

Q ss_pred             ccceEEEEEEEeccCCCCCCCC-CCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEE-eCcCC---CceEEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN-VKTVE---SSLKCEIF  126 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~-gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~-V~~~d---~~LkleV~  126 (430)
                      ...+.|+|+|++|+||+..+.+ +++||||+|++.++...++||+++++ +.||+|||+|.|. +...+   ..|+++| 
T Consensus        19 ~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~~~~~~l~i~V-   96 (138)
T 1ugk_A           19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQIQELALHFTI-   96 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTGGGCEEEEEE-
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcC-CCCCcEeeEEEEcCcCHHHhccCEEEEEE-
Confidence            3468999999999999999986 89999999999875557999999997 7999999999996 66422   2445544 


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                         +|++.+ .|++||.+.|+|.++..+.+....|+.|..
T Consensus        97 ---~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~  133 (138)
T 1ugk_A           97 ---LSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             ---EEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             ---EECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhc
Confidence               888877 699999999999999875455567888863

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=5.1e-18  Score=161.79  Aligned_cols=128  Identities=23%  Similarity=0.253  Sum_probs=106.4

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMS  129 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v  129 (430)
                      ..+.|+|+|++|+||+..+..++.||||+|++.++..++++|+++++ +.||+|||+|.|.|...   ...|+++|    
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~~~~~l~~~V----   91 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELAGKTLVMAV----   91 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGCTTCEEEEEE----
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHhCcCEEEEEE----
Confidence            45899999999999999999999999999999876557899999997 69999999999998753   23455555    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCC-CCCCcEEEEEEEEEccC
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLF-HSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~-~~p~G~I~LsLsf~p~~  186 (430)
                      +|.+.+ .|++||.+.|+|.++.. +.....||+|...... ....|.|++.+.|.+..
T Consensus        92 ~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~  149 (284)
T 2r83_A           92 YDFDRFSKHDIIGEFKVPMNTVDF-GHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTA  149 (284)
T ss_dssp             EECCSSSCCCEEEEEEEEGGGCCC-SSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTT
T ss_pred             EECCCCCCCceeEEEEEcchhccc-CCcceeEEEeeccccccccccccEEEEEEecCcC
Confidence            888877 69999999999999987 4677899999754221 23579999999998754

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.77  E-value=3.4e-18  Score=147.79  Aligned_cols=106  Identities=24%  Similarity=0.294  Sum_probs=88.9

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEE-eCcC---CCceEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLN-VKTV---ESSLKCEIF  126 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~-V~~~---d~~LkleV~  126 (430)
                      ..+.|+|+|++|+||+. +..+.+||||+|++.++.  ..++||+++++ +.||+|||+|.|. |...   ...|.++| 
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~~v~~~~l~~~~L~~~V-   94 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRK-TRNPTFNEMLVYSGYSKETLRQRELQLSV-   94 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCS-CSSCEEEEEEEEESCCHHHHTTCEEEEEE-
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcC-CCCCCCccEEEECCcCHHHhCcCEEEEEE-
Confidence            46899999999999997 778999999999996542  46899999997 7999999999999 7642   24555555 


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                         +|.+.+ +|++||.+.|+|.++.. +.....||+|..
T Consensus        95 ---~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~W~~L~~  130 (134)
T 2b3r_A           95 ---LSAESLRENFFLGGITLPLKDFNL-SKETVKWYQLTA  130 (134)
T ss_dssp             ---EECCSSSCCEEEEEEEEEGGGSCT-TSCEEEEEECBC
T ss_pred             ---EECCCCCCCcEEEEEEEEhhhccC-CCCcceeEECCC
Confidence               888877 69999999999999987 466789999963

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.77  E-value=4.4e-19  Score=158.48  Aligned_cols=107  Identities=15%  Similarity=0.193  Sum_probs=88.9

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC---CCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP---ENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIF  126 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p---~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~  126 (430)
                      ..+.|+|+|++|+||+..+..|+.||||+++|.+..   ..++||+++++ +.||+|||+|.|.|...   ...|+++| 
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~-tlnP~wnE~F~f~v~~~~l~~~~L~~~V-  118 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDA-SDTLVFNEVFWVSMSYPALHQKTLRVDV-  118 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEEC-CSSEEEEEEEEEECCHHHHHHCEEEEEE-
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCC-CCCCccccEEEEEcCHHHhCcCEEEEEE-
Confidence            358999999999999999999999999999998632   23899999998 79999999999998762   23455555 


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                         +|.|.+ +|++||.+.|+|.++...+....+||.|.
T Consensus       119 ---~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          119 ---CTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             ---EEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             ---EECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence               788877 79999999999999964345667999984

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=1.7e-18  Score=146.69  Aligned_cols=104  Identities=20%  Similarity=0.230  Sum_probs=83.8

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIF  126 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~  126 (430)
                      ..+.|+|+|++|+||+..+..+++||||++++.++.  ..++||+++++ +.||+|||+|.|.+...    ...|+++| 
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~~~V-   93 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITL-   93 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGGGGCEEEEEE-
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccC-CCCCccccEEEEccCCHHHhcCCeEEEEE-
Confidence            358999999999999999999999999999996543  36899999997 79999999999995321    23455544 


Q ss_pred             EEEeecccc-c--CceeEEEEEeCccccccCceeeEEEEc
Q 014112          127 MMSRVKNYL-E--DQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       127 v~v~Ded~v-~--DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                         +|++.+ .  |++||.+.|+|.++... + ..+||+|
T Consensus        94 ---~d~d~~~~~~~~~lG~~~i~l~~l~~~-~-~~~W~~L  128 (129)
T 2bwq_A           94 ---WDQARVREEESEFLGEILIELETALLD-D-EPHWYKL  128 (129)
T ss_dssp             ---EEC-------CEEEEEEEEEGGGCCCS-S-CEEEEEC
T ss_pred             ---EECCcCcCcCCceeEEEEEEccccCCC-c-CCccEEC
Confidence               888877 4  99999999999999863 4 6799998

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.76  E-value=2e-18  Score=150.71  Aligned_cols=110  Identities=16%  Similarity=0.249  Sum_probs=90.9

Q ss_pred             ccceEEEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCC---ceEEEE
Q 014112           52 NFIGVLEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVES---SLKCEI  125 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~---~LkleV  125 (430)
                      ...+.|+|+|++|+||+..+ ..++.||||++++.++..  .++||+++++ +.||+|||+|.|.|...+.   .|+++|
T Consensus        20 ~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~~L~~~V   98 (148)
T 3fdw_A           20 QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRD-TVNPLYDETLRYEIPESLLAQRTLQFSV   98 (148)
T ss_dssp             TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSS-CSSCEEEEEEEEECCSTTGGGCEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCC-CCCCcEeeEEEEEeChhHhCceEEEEEE
Confidence            34689999999999999888 679999999999986542  4899999997 7999999999999886432   345544


Q ss_pred             EEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCC
Q 014112          126 FMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTD  167 (430)
Q Consensus       126 ~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~d  167 (430)
                          +|.+.+ +|++||.+.|+|.++.. +.....||+|..+.
T Consensus        99 ----~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~W~~L~~~~  136 (148)
T 3fdw_A           99 ----WHHGRFGRNTFLGEAEIQMDSWKL-DKKLDHCLPLHGKI  136 (148)
T ss_dssp             ----EEECGGGCEEEEEEEEEEHHHHHH-HCCSEEEEECBCC-
T ss_pred             ----EECCCCcCCcEEEEEEEEcccccc-cCCccceEECcCcc
Confidence                788877 69999999999999987 35667999997553

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.76  E-value=1.7e-18  Score=148.51  Aligned_cols=107  Identities=21%  Similarity=0.250  Sum_probs=88.4

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEe-CcC---CCceEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNV-KTV---ESSLKCEIFM  127 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V-~~~---d~~LkleV~v  127 (430)
                      .+.|+|+|++|++|+..+..++.||||+|++.++.  ..++||+++++ +.||+|||+|.|.+ ...   ...|+++|  
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V--   96 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREFRERMLEITL--   96 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSS-CSSCCCCCCCEECSCCTTGGGTCEEEEEE--
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccC-CCCCccccEEEEccCCHHHhcCCEEEEEE--
Confidence            58999999999999999999999999999996543  36899999998 79999999999995 321   23455555  


Q ss_pred             EEeecccc-c--CceeEEEEEeCccccccCceeeEEEEccCCC
Q 014112          128 MSRVKNYL-E--DQLLGFTLVPLSEVLVKNGKLEKEFSLSSTD  167 (430)
Q Consensus       128 ~v~Ded~v-~--DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~d  167 (430)
                        +|++.+ .  |++||.+.|+|.++... + ..+||+|....
T Consensus        97 --~d~d~~~~~~~~~lG~~~i~l~~l~~~-~-~~~W~~L~~~~  135 (141)
T 1v27_A           97 --WDQARVREEESEFLGEILIELETALLD-D-EPHWYKLQTHD  135 (141)
T ss_dssp             --EEBCSSSSCCBCCCEEEEEEGGGCCCS-S-EEEEEECBCCS
T ss_pred             --EECCCCcCCCCceEEEEEEEccccCCC-C-CCceEECcccc
Confidence              888877 4  99999999999999863 3 68999997543

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.76  E-value=4.4e-18  Score=148.62  Aligned_cols=105  Identities=27%  Similarity=0.345  Sum_probs=89.0

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC--CceEEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE--SSLKCEIFMMS  129 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d--~~LkleV~v~v  129 (430)
                      .+.|+|+|++|+||+..+..+++||||+|++.++.  ..++||+++++ +.||+|||+|.|.+...+  ..|+++|    
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V----  104 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDKDRRLSVEI----  104 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGGGCEEEEEE----
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCC-CCCCcCCcEEEEEeccccCCCEEEEEE----
Confidence            47899999999999999999999999999998643  36899999998 799999999999997632  2444444    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      +|++.+ .|++||.+.|+|.++..+  ..+.||+|..
T Consensus       105 ~d~d~~~~~~~iG~~~i~l~~l~~~--~~~~W~~L~~  139 (149)
T 1a25_A          105 WDWDLTSRNDFMGSLSFGISELQKA--GVDGWFKLLS  139 (149)
T ss_dssp             EECCSSSCCEEEEEEEEEHHHHTTC--CEEEEEECBC
T ss_pred             EECCCCCCCCEEEEEEEEHHHhCcC--ccCCeEEccC
Confidence            888887 699999999999999863  4678999963

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=3e-18  Score=149.12  Aligned_cols=107  Identities=23%  Similarity=0.285  Sum_probs=87.6

Q ss_pred             cceEEEEEEEeccCCCCC-------CCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC---CceE
Q 014112           53 FIGVLEVYIHQARDIHNI-------CIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLK  122 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~-------di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~Lk  122 (430)
                      ..+.|+|+|++|+||+..       +.+++.||||+|++.++..+++||+++++ +.||+|||+|.|.|...+   ..|+
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK-TQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCS-CSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccC-CCCCeEeeeEEEEeChHHhccCEEE
Confidence            468999999999999984       34578999999999876557899999997 799999999999987521   2455


Q ss_pred             EEEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          123 CEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       123 leV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      ++|    +|++.+ +|++||.+.|+|.++.. ......||.|..
T Consensus       103 ~~V----~d~d~~~~~~~iG~~~i~l~~l~~-~~~~~~w~~L~~  141 (147)
T 2enp_A          103 LTV----VDFDKFSRHCVIGKVSVPLCEVDL-VKGGHWWKALIP  141 (147)
T ss_dssp             EEE----ECCSTTCCSCCCEEEEEETTTSCT-TTCCCEEECCBC
T ss_pred             EEE----EECCCCcCCcEEEEEEEechhcCC-CCCccEEEEeec
Confidence            555    888877 68999999999999986 344568999964

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.75  E-value=3.4e-18  Score=153.76  Aligned_cols=107  Identities=17%  Similarity=0.208  Sum_probs=89.1

Q ss_pred             ceEEEEEEEeccCCCCCCC-CCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           54 IGVLEVYIHQARDIHNICI-YHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di-~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      .+.|+|+|++|+||+..+. .++.||||+|++.++..  .++||+++++ +.||+|||+|.|.|......|+++|    +
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~L~~~V----~  103 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK-TLDPLYQQSLVFDESPQGKVLQVIV----W  103 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEECSSCCTTEEEEEEE----E
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCC-CCCCCCCcEEEEEecCCCCEEEEEE----E
Confidence            6899999999999999996 79999999999986532  3889999997 7999999999999976444555555    7


Q ss_pred             -ecccc-cCceeEEEEEeCccccccCceeeEEEEccCC
Q 014112          131 -VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSST  166 (430)
Q Consensus       131 -Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~  166 (430)
                       |++.+ .|++||.+.|+|.++.. +....+||+|...
T Consensus       104 ~d~d~~~~d~~iG~~~i~l~~l~~-~~~~~~W~~L~~~  140 (171)
T 2q3x_A          104 GDYGRMDHKCFMGVAQILLEELDL-SSMVIGWYKLFPP  140 (171)
T ss_dssp             EECSTTCSSEEEEEEEECGGGSCT-TSCEEEEEECBCG
T ss_pred             EcCCCCCCCCEEEEEEEEHHHccc-CCCcceeEECCCc
Confidence             88877 68999999999999986 4567899999743

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=4.7e-18  Score=146.81  Aligned_cols=107  Identities=21%  Similarity=0.308  Sum_probs=88.0

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v  127 (430)
                      ..+.|+|+|++|+||+..+..+ .||||+|++.++..  .++||+++++ +.||+|||+|.|.|...   ...|+++|  
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V--   97 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK-TLNPVFDQSFDFSVSLPEVQRRTLDVAV--   97 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCS-CSSCEEEEEEEECCCHHHHHHCEEEEEE--
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCC-CCCCCcCceEEEEecHHHhCcCEEEEEE--
Confidence            3589999999999999999989 99999999986543  6899999997 79999999999998652   12455544  


Q ss_pred             EEeecccc-c--CceeEEEEEeCccccccCceeeEEEEccCC
Q 014112          128 MSRVKNYL-E--DQLLGFTLVPLSEVLVKNGKLEKEFSLSST  166 (430)
Q Consensus       128 ~v~Ded~v-~--DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~  166 (430)
                        +|++.+ .  |++||.+.|+|.++.. +....+||+|...
T Consensus        98 --~d~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~~W~~L~~~  136 (142)
T 2dmg_A           98 --KNSGGFLSKDKGLLGKVLVALASEEL-AKGWTQWYDLTED  136 (142)
T ss_dssp             --EECCCSSCCSCCCCEEEEEECCCSTT-TTCBCCBCCCBCS
T ss_pred             --EECCCccccCCcEEEEEEEecccccc-cccccceeeccCC
Confidence              888865 2  5799999999999986 3566789999743

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.74  E-value=1.7e-18  Score=149.35  Aligned_cols=106  Identities=19%  Similarity=0.253  Sum_probs=88.4

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC-----------CeEEeeeecCCCCCCeecceEEEE-eCc---CC
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE-----------NTVSTNIINGGGRNPVFNENLKLN-VKT---VE  118 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~-----------~k~KTkVikngG~NPvWNEtF~F~-V~~---~d  118 (430)
                      .+.|+|+|++|+||+..+..|++||||+|++.+...           .++||+++++ +.||+|||+|.|. +..   ..
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~l~~   95 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCC-CCCCCCCCEEEECCcCHHHccC
Confidence            578999999999999999999999999999986532           2589999997 7999999999997 653   23


Q ss_pred             CceEEEEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          119 SSLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       119 ~~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      ..|.++|    +|++.+ .|++||.+.|+|.++.. +....+||+|..
T Consensus        96 ~~l~i~V----~d~d~~~~~~~lG~~~i~l~~l~~-~~~~~~W~~L~~  138 (142)
T 1rh8_A           96 KTLEVTV----WDYDRFSSNDFLGEVLIDLSSTSH-LDNTPRWYPLKE  138 (142)
T ss_dssp             CEEEEEE----EEECSSSCEEEEEEEEEETTSCGG-GTTCCEEEECBC
T ss_pred             CEEEEEE----EECCCCCCCceEEEEEEecccccc-CCCCCeEEECCc
Confidence            3555555    888877 69999999999999986 355679999964

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.74  E-value=1.3e-17  Score=146.74  Aligned_cols=108  Identities=17%  Similarity=0.209  Sum_probs=88.4

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCc--CCCceEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKT--VESSLKCEIFMM  128 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~--~d~~LkleV~v~  128 (430)
                      ..+.|.|+|++|+||+..+ .+..||||+|++.+..  ..++||+++++ +.||+|||+|.|.|..  ....|+++|   
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i~V---   99 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPD-CRDPAFHEHFFFPVQEEDDQKRLLVTV---   99 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTT-CSSCEEEEEEEEECCGGGTTSEEEEEE---
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCC-CCCCccccEEEEecccHHhCCEEEEEE---
Confidence            4589999999999999998 6999999999997643  35899999997 7999999999999954  333455544   


Q ss_pred             Eeecccc-c-CceeEEEEEeCccccccCceeeEEEEccCC
Q 014112          129 SRVKNYL-E-DQLLGFTLVPLSEVLVKNGKLEKEFSLSST  166 (430)
Q Consensus       129 v~Ded~v-~-DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~  166 (430)
                       +|.+.+ + |++||.+.|+|.++...+.....||+|...
T Consensus       100 -~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          100 -WNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             -EECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             -EeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence             888876 5 999999999999998434667899999754

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.74  E-value=1.1e-17  Score=144.38  Aligned_cols=106  Identities=22%  Similarity=0.329  Sum_probs=88.0

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEE-eCcCC---CceEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLN-VKTVE---SSLKCEIF  126 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~-V~~~d---~~LkleV~  126 (430)
                      ..+.|+|+|++|++|+..+..++.||||+|++.++.  ..++||+++++ +.||+|||+|.|. +...+   ..|+++| 
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~~~l~i~V-  104 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN-TRNPVWNETLQYHGITEEDMQRKTLRISV-  104 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCS-CSSCEEEEEEEEESCCHHHHHHCEEEEEE-
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCC-CCCCcCcCEEEEcccCHHHccCCEEEEEE-
Confidence            468999999999999999999999999999998643  26899999997 7999999999998 65421   3455555 


Q ss_pred             EEEeecccc-cCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          127 MMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       127 v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                         +|++.+ .|++||.+.|+|.++.. ++....|+.|.
T Consensus       105 ---~d~d~~~~d~~iG~~~i~l~~l~~-~~~~~~~~~L~  139 (142)
T 2chd_A          105 ---CDEDKFGHNEFIGETRFSLKKLKA-NQRKNFNICLE  139 (142)
T ss_dssp             ---EEECTTSCEEEEEEEEEEGGGCCT-TCCEEEEEECB
T ss_pred             ---EECCCCCCCcEEEEEEEEHHHcCC-CCccEEEEecc
Confidence               888877 68999999999999987 45556777774

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.73  E-value=3.8e-17  Score=158.17  Aligned_cols=129  Identities=21%  Similarity=0.212  Sum_probs=103.1

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMS  129 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v  129 (430)
                      ..+.|.|+|++|++|+..+..++.||||+|++.++..+++||+++++ +.||+|||+|.|.|...   ...|+++|    
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~~~V----   92 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSV----   92 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEE----
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHhcCCEEEEEE----
Confidence            46899999999999999999999999999999765557899999987 79999999999998753   22566665    


Q ss_pred             eecccc-cCceeEEEEEe-CccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          130 RVKNYL-EDQLLGFTLVP-LSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VP-LsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      +|.|.+ +|++||.+.++ |.++.........|+.|..........|.|++.+.|.+..
T Consensus        93 ~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~  151 (296)
T 1dqv_A           93 YDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTA  151 (296)
T ss_dssp             EECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTT
T ss_pred             EEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecccc
Confidence            888877 69999999996 5555542334567999964332234579999999998754

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.72  E-value=2.9e-17  Score=144.93  Aligned_cols=107  Identities=19%  Similarity=0.288  Sum_probs=86.9

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v  127 (430)
                      ..+.|+|+|++|+||+..+..++.||||+|++.++..  .++||+++++ +.||+|||+|.|.|...+   ..|+++|  
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V--   99 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQKVQVVVTV--   99 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEE--
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecC-CCCCcccceEEEEcCHHHhCCcEEEEEE--
Confidence            4689999999999999999999999999999976432  4789999997 799999999999987532   2345544  


Q ss_pred             EEeecccc-cCceeEEEEEeCccc----------ccc-CceeeEEEEcc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEV----------LVK-NGKLEKEFSLS  164 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdL----------l~~-~~~l~~~f~Ls  164 (430)
                        +|++.+ .|++||.+.|+|..+          ... +....+||+|.
T Consensus       100 --~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~  146 (159)
T 1tjx_A          100 --LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ  146 (159)
T ss_dssp             --EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             --EECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECc
Confidence              888877 699999999999953          322 34567899985

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.72  E-value=1.7e-17  Score=144.21  Aligned_cols=100  Identities=19%  Similarity=0.321  Sum_probs=77.5

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK  132 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De  132 (430)
                      ..+.|.|+|++|++|..   .+++||||+|+ .    +..||+++++++.||+|||+|.|.+...+..|+++|    +|+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~----~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V----~D~   70 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK-V----QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEV----WNK   70 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE-E----TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEE----EEC
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE-e----cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEE----EEC
Confidence            35899999999999863   68899999999 2    456777777568999999999999987555566655    888


Q ss_pred             ccccCceeEEEEEeCccccccCce-eeEEEEcc
Q 014112          133 NYLEDQLLGFTLVPLSEVLVKNGK-LEKEFSLS  164 (430)
Q Consensus       133 d~v~DdlIG~a~VPLsdLl~~~~~-l~~~f~Ls  164 (430)
                      |...|++||.+.|||.++...+.. ...|+++.
T Consensus        71 d~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~  103 (131)
T 2cjt_A           71 GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD  103 (131)
T ss_dssp             CSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECB
T ss_pred             CCCCCCeEEEEEEEHHHhhhcCCCCccccEEcc
Confidence            833799999999999999763211 12455554

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.71  E-value=2.9e-17  Score=142.45  Aligned_cols=104  Identities=15%  Similarity=0.053  Sum_probs=84.8

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCC-CCCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSD-PENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFMM  128 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~-p~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v~  128 (430)
                      ..+.|+|+|++|+   +.+..++.||||+|++.+. ...++||+++++ +.||+|||+|.|.|...+   ..|+++|   
T Consensus        24 ~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~-tlnP~wnE~f~f~v~~~~l~~~~L~~~V---   96 (138)
T 1wfm_A           24 QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTLTL---   96 (138)
T ss_dssp             TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEEEE---
T ss_pred             CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcC-CCCCcCCceEEEEecHHHcCCCEEEEEE---
Confidence            3589999999999   4677899999999999653 234789999997 799999999999987632   2455544   


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                       +|.|.+ +|++||.+.|+|.++.. +.....||+|..
T Consensus        97 -~d~d~~~~dd~lG~~~i~l~~l~~-~~~~~~W~~L~~  132 (138)
T 1wfm_A           97 -RTCDRFSRHSVAGELRLGLDGTSV-PLGAAQWGELKT  132 (138)
T ss_dssp             -EECCSSCTTSCSEEEEEESSSSSS-CTTCCEEEECCC
T ss_pred             -EECCCCCCCcEEEEEEEEcccccC-cccccceeeCcC
Confidence             888877 79999999999999975 355678999964

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.71  E-value=3.7e-17  Score=139.42  Aligned_cols=94  Identities=20%  Similarity=0.256  Sum_probs=78.8

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v  127 (430)
                      ..+.|+|+|++|+||+..+..++.||||++++.+..  ..+++|+++++ +.||+|||+|.|.|...+   ..|.+    
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l~~~~l~~----   88 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR-NLNPIFNESFAFDIPTEKLRETTIII----   88 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSS-CSSCEEEEEEEEECCGGGGGGEEEEE----
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccC-CCCCcCcceEEEECChhhcCceEEEE----
Confidence            358999999999999999999999999999998643  24789999997 699999999999987643   23444    


Q ss_pred             EEeecccc-cCceeEEEEEeCcccc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVL  151 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl  151 (430)
                      .++|.+.+ .|++||.+.|+|.++.
T Consensus        89 ~V~d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           89 TVMDKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             EEEECCSSSCCEEEEEEEESSSSCH
T ss_pred             EEEECCCCCCCcEEEEEEEccccCC
Confidence            44888877 6999999999999654

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.71  E-value=3.7e-17  Score=143.12  Aligned_cols=95  Identities=16%  Similarity=0.192  Sum_probs=72.3

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ..+.|+|+|++|+||+..+..++.||||+|++.++..  .++||+++++ +.||+|||+|.|.|...+.. ...|.+.++
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~-~~~l~v~V~  105 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLE-EISVEFLVL  105 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSST-TEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccC-CCCCeecceEEEECCHHHhC-ceEEEEEEE
Confidence            4589999999999999999999999999999976432  2779999997 79999999999999864321 112333448


Q ss_pred             ecccc-cCceeEEEEEeCcc
Q 014112          131 VKNYL-EDQLLGFTLVPLSE  149 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsd  149 (430)
                      |++.+ .|++||.+.|+|.+
T Consensus       106 d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          106 DSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             ECCTTSCCEEEEEEEESTTC
T ss_pred             eCCCCCCCcEEEEEEECCCC
Confidence            88877 69999999999998

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.70  E-value=1e-16  Score=142.56  Aligned_cols=94  Identities=22%  Similarity=0.201  Sum_probs=79.5

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v  127 (430)
                      ..+.|+|+|++|+||+..+..++.||||+|++.++.  ..++||+++++ +.||+|||+|.|.|...+   ..|+++|  
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V--  111 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLAKKSLDISV--  111 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGGGCEEEEEE--
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccC-CCCCcccceEEEEcchHhcCCCEEEEEE--
Confidence            468999999999999999999999999999998643  36899999997 799999999999997532   2455544  


Q ss_pred             EEeecccc-cCceeEEEEEeCcccc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVL  151 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl  151 (430)
                        +|++.+ .|++||.+.|+|.++.
T Consensus       112 --~d~d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          112 --WDYDIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             --EECCSSSCCEEEEEEEEETTCCH
T ss_pred             --EECCCCCCCcEEEeEEEecccCC
Confidence              888877 6999999999999853

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.68  E-value=1.6e-16  Score=144.06  Aligned_cols=122  Identities=17%  Similarity=0.236  Sum_probs=88.0

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeec
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVK  132 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~De  132 (430)
                      ..+.|.|+|++|++|.   ..+++||||+|+  .   +.+||+++++++.||+|||+|.|.|......|+++|    +|+
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~---~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V----~D~   79 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--V---QNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEV----WNK   79 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE--E---TTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEE----EEC
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE--e---cceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEE----EEC
Confidence            4689999999999885   368999999999  2   456888887668999999999999987655566655    888


Q ss_pred             ccccCceeEEEEEeCccccccCc----e-eeEEEEccCCCCC--C---CCCcEEEEEEEEEccC
Q 014112          133 NYLEDQLLGFTLVPLSEVLVKNG----K-LEKEFSLSSTDLF--H---SPAGFVQLSLAYAGAS  186 (430)
Q Consensus       133 d~v~DdlIG~a~VPLsdLl~~~~----~-l~~~f~Lss~dl~--~---~p~G~I~LsLsf~p~~  186 (430)
                      |...|++||.+.|||.++...+.    . ...+|.+...+..  +   ...|.+++.++|...+
T Consensus        80 d~~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~~  143 (167)
T 2cjs_A           80 GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPL  143 (167)
T ss_dssp             CSSCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECCC
T ss_pred             CCCCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecCC
Confidence            83479999999999999976321    1 1234443311110  0   1234577777776655

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.66  E-value=2.2e-16  Score=141.43  Aligned_cols=121  Identities=13%  Similarity=0.175  Sum_probs=95.7

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC-CCceEEEEEEEEeec
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV-ESSLKCEIFMMSRVK  132 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~-d~~LkleV~v~v~De  132 (430)
                      .-.|+|+|.+|++|+     ++.||||+|.+.+   .++|||++++|+.||+|||+|.|++... +..-.  |.+.++|.
T Consensus        20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg---~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~--L~v~V~d~   89 (144)
T 3l9b_A           20 HMALIVHLKTVSELR-----GRADRIAKVTFRG---QSFYSRVLENCEDVADFDETFRWPVASSIDRNEV--LEIQIFNY   89 (144)
T ss_dssp             CEEEEEEEEEEESCC-----SCEEEEEEEEETT---EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCE--EEEEEEEE
T ss_pred             cEEEEEEEEEecCCC-----CCCCCeEEEEEec---cceeeEEeccCCCCceEcceEEecCCCCCCCCCE--EEEEEEEC
Confidence            468999999999999     5899999999965   7999999986689999999999999872 22212  33344888


Q ss_pred             ccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          133 NYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       133 d~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      +.+ +|++||++.++|.+|.. .+.+..+-+|...... ...+.|.|+|+|.|..
T Consensus        90 ~~v~~nrlIG~~~i~Lq~lv~-~~~l~l~~~LvD~n~~-~~~a~I~l~l~Y~pp~  142 (144)
T 3l9b_A           90 SKVFSNKLIGTFRMVLQKVVE-ENRVEVSDTLIDDNNA-IIKTSLSMEVRYQAAD  142 (144)
T ss_dssp             CTTSCCEEEEEEEEESHHHHH-HSEEEEEEEEECTTSC-EEEEEEEEEEEEEETT
T ss_pred             ccccCCCEEEEEEEEhHHhcc-CCeEEEeecccCCCCC-ccccEEEEEEEecCCC
Confidence            777 79999999999999998 4666666666543321 1348999999999854

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.66  E-value=3.9e-16  Score=160.36  Aligned_cols=120  Identities=22%  Similarity=0.319  Sum_probs=99.8

Q ss_pred             ccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC-CceEEEEEEEEe
Q 014112           52 NFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE-SSLKCEIFMMSR  130 (430)
Q Consensus        52 ~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d-~~LkleV~v~v~  130 (430)
                      ...+.|+|+|++|++|+..+..|++||||+|++.+   .+++|+++++ +.||+|||+|.|.+.... ..|+++|    +
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~---~~~~T~~~~~-t~nP~w~e~f~f~~~~~~~~~l~~~v----~  455 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGS---QSYTTRTIQD-TLNPKWNFNCQFFIKDLYQDVLCLTL----F  455 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT---EEEECCCCSS-CSSCEEEEEEEEEESCTTTCEEEEEE----E
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECC---eeccCCccCC-CCCCccCceEEEEecCCCCCEEEEEE----E
Confidence            45789999999999999999999999999999954   6899999998 699999999999997643 3466655    8


Q ss_pred             ecccc-cCceeEEEEEeCccccccC---ceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKN---GKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~---~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      |+|.+ .|++||.+.++|.++..+.   +....|+.|..     .+.|.|+|.+++..
T Consensus       456 d~d~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~-----~~~G~i~l~~~l~l  508 (510)
T 3jzy_A          456 DRDQFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLHE-----VPTGEVWVRFDLQL  508 (510)
T ss_dssp             ECCSSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECBS-----SSSCEEEEEEEEEE
T ss_pred             eCCCCCCCCceEEEEEEHHHhccccCCCCceeeeecCCC-----CCCceEEEEEEEEE
Confidence            88877 6999999999999998742   22678999863     36899999888753

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.64  E-value=1.5e-15  Score=160.92  Aligned_cols=112  Identities=19%  Similarity=0.226  Sum_probs=94.1

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc--CCCceEEEEEEE
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT--VESSLKCEIFMM  128 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~--~d~~LkleV~v~  128 (430)
                      ....+.|+|+|++|++|+. |++|+.||||+|++.+   +++||+|+++ +.||+|||+|.|.+..  ....|+++|   
T Consensus       390 ~~~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~---~~~kTkvik~-tlNP~Wne~f~f~~~~~~~~~~L~~~V---  461 (540)
T 3nsj_A          390 QRGLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG---QEFRTGVVWN-NNNPRWTDKMDFENVLLSTGGPLRVQV---  461 (540)
T ss_dssp             STTEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT---EEEECCCBCS-CSSCBCCCCEEEEEEETTTCCCEEEEE---
T ss_pred             cCcccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC---EeeeeeeecC-CCCCCCCeEEEEEEecCCCCCEEEEEE---
Confidence            3447899999999999999 9999999999999975   5799999998 6999999999998643  445677776   


Q ss_pred             Eeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          129 SRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       129 v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                       +|+|.+ +||+||.+.++|.   .  +..+.|++|.        .|.|+++++...
T Consensus       462 -~D~D~~~~dD~LG~~~~~L~---~--g~~~~~~~l~--------~G~l~~~~~~~c  504 (540)
T 3nsj_A          462 -WDADYGWDDDLLGSCDRSPH---S--GFHEVTCELN--------HGRVKFSYHAKC  504 (540)
T ss_dssp             -EECCSSSCCEEEEEEEECCC---S--EEEEEEEECS--------SSEEEEEEEEEE
T ss_pred             -EECCCCCCCCEEEEEEEEee---C--CcEEEEEEcC--------CeEEEEEEEEEE
Confidence             888887 6899999999987   2  4567889884        799999888554

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.61  E-value=3e-15  Score=160.81  Aligned_cols=123  Identities=12%  Similarity=0.162  Sum_probs=97.7

Q ss_pred             cceEEEEEEEeccCCCCCCC--CCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCC-ceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICI--YHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVES-SLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di--~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~-~LkleV~v  127 (430)
                      ..+.|+|+|++|++|+..+.  .++.||||+|.|.+.+  ..++||++++++|.||+|||+|.|.|...+. .|+++|  
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V--  572 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMV--  572 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEE--
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEE--
Confidence            56899999999999998874  6899999999997653  2588999999977999999999999986432 445544  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                        +|+|.+ +|++||.+.|||..|..|    .+|++|........+.|.|.+.++|.
T Consensus       573 --~D~D~~~~dd~iG~~~ipl~~L~~G----~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          573 --EDYDSSSKNDFIGQSTIPWNSLKQG----YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             --EECCSSSCCEEEEEEEEEGGGBCCE----EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             --EEcCCCCCCceeEEEEEEHHHcCCC----cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence              888877 799999999999999863    36889864432212357788887774

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.59  E-value=2.4e-15  Score=164.52  Aligned_cols=108  Identities=23%  Similarity=0.365  Sum_probs=94.0

Q ss_pred             CccceEEEEEEEeccCCCC---CCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCc-CCCceEEEEE
Q 014112           51 GNFIGVLEVYIHQARDIHN---ICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKT-VESSLKCEIF  126 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn---~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~-~d~~LkleV~  126 (430)
                      ..+.+.|+|+|++|++|+.   .+..|++||||+|++.+.+..++||+++++ +.||+|||+|.|.|.. ....|+++| 
T Consensus        14 ~~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~-tlNPvWNEtF~F~v~~~~~~~L~~~V-   91 (749)
T 1cjy_A           14 HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITL-   91 (749)
T ss_dssp             CCCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCBCEEEE-
T ss_pred             CCCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcC-CCCCeeeeEEEEEecCCCCCEEEEEE-
Confidence            4568999999999999999   888899999999999876667999999997 7999999999999987 345666666 


Q ss_pred             EEEeecccccCceeEEEEEeCccccccCceeeEEEEcc
Q 014112          127 MMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLS  164 (430)
Q Consensus       127 v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Ls  164 (430)
                         +|+|.+.|++||.+.|+|.+|.. +.....||+|.
T Consensus        92 ---~D~D~~~ddfIG~v~I~L~~L~~-g~~~~~w~~L~  125 (749)
T 1cjy_A           92 ---MDANYVMDETLGTATFTVSSMKV-GEKKEVPFIFN  125 (749)
T ss_dssp             ---EECCSSSCEEEEEECCBSTTSCT-TCCCCEEEEET
T ss_pred             ---EECCCCCCceeEEEEEEHHHcCC-CCceEEEEecC
Confidence               88887679999999999999986 45667999995

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.57  E-value=1e-14  Score=138.93  Aligned_cols=110  Identities=18%  Similarity=0.256  Sum_probs=85.9

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ..+.|.|+|++|+||+..+..+..||||++++.++..  .++||+++++ +.||+|||+|.|.|...+.. ...|.+.++
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~-~~~l~i~V~  225 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQIQ-KVQVVVTVL  225 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCTTTGG-GEEEEEEEE
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEceeEEEeCCHHHhC-ceEEEEEEE
Confidence            3578999999999999999999999999999975432  4789999987 79999999999999763221 112334448


Q ss_pred             ecccc-cCceeEEEEEeCcccc-----------ccCceeeEEEEcc
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVL-----------VKNGKLEKEFSLS  164 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl-----------~~~~~l~~~f~Ls  164 (430)
                      |.+.+ .|++||.+.|+|..+.           ..+....+||+|.
T Consensus       226 d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~  271 (284)
T 2r83_A          226 DYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ  271 (284)
T ss_dssp             ECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECB
T ss_pred             eCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecC
Confidence            88877 6999999999998632           1124567899985

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.49  E-value=2.3e-15  Score=156.63  Aligned_cols=122  Identities=18%  Similarity=0.227  Sum_probs=22.5

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCC--CCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGG--GRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikng--G~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ..+.|+|+|++|++|+..+     ||||++++.+.  ...||+++++.  |.||+|||+|.|.+......|.++|    +
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~--~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V----~   77 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDDM--LYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHL----Y   77 (483)
T ss_dssp             EEECC----------------------------------------------------CCEECC-----------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECCe--EEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEE----E
Confidence            4578999999999999876     99999999753  46799999862  4999999999999654334455544    6


Q ss_pred             ec-c---cc-cCceeEEEEEeCccccccCceeeEEEEccCCCC----------------------CCCCCcEEEEEEEEE
Q 014112          131 VK-N---YL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDL----------------------FHSPAGFVQLSLAYA  183 (430)
Q Consensus       131 De-d---~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl----------------------~~~p~G~I~LsLsf~  183 (430)
                      |+ +   .+ +|++||.+.|||.++.. +...+.||+|.....                      .....|.|+|.+.|.
T Consensus        78 d~~d~~~~~~~d~~lG~v~i~l~~l~~-~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~  156 (483)
T 3bxj_A           78 RDSDKKRKKDKAGYVGLVTVPVATLAG-RHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQ  156 (483)
T ss_dssp             ------------------------------CCEECC--------------------------------------CEEEEE
T ss_pred             ecCCccccCCCCceEEEEEEEHHHhcC-CCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEee
Confidence            63 3   23 79999999999999987 466789999953221                      012469999999999


Q ss_pred             ccC
Q 014112          184 GAS  186 (430)
Q Consensus       184 p~~  186 (430)
                      +..
T Consensus       157 ~~~  159 (483)
T 3bxj_A          157 TMS  159 (483)
T ss_dssp             ECC
T ss_pred             eee
Confidence            875

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.47  E-value=1.6e-14  Score=139.80  Aligned_cols=95  Identities=22%  Similarity=0.274  Sum_probs=80.2

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v  127 (430)
                      ..|.|+|+|++|+||+..+..|..||||++++..+.  ..++||+++++ +.||+|||+|.|.|....   ..|+++|  
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~L~i~V--  226 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAV--  226 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEE--
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeECceEEEEcCHHHccCcEEEEEE--
Confidence            358999999999999999999999999999997543  36889999997 799999999999987632   2466665  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLV  152 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~  152 (430)
                        +|++.+ .|++||.+.|+|..+..
T Consensus       227 --~d~d~~~~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          227 --VDYDCIGHNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             --EECCSSSCCEEEEECCCSSCTTCH
T ss_pred             --EeCCCCCCCceEEEEEECCccCCc
Confidence              888877 69999999999997743

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.40  E-value=1.1e-12  Score=144.45  Aligned_cols=116  Identities=16%  Similarity=0.228  Sum_probs=86.8

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEee-eecCCCCCCeecc-eEEE-EeCcCCC-ceEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTN-IINGGGRNPVFNE-NLKL-NVKTVES-SLKCEI  125 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTk-VikngG~NPvWNE-tF~F-~V~~~d~-~LkleV  125 (430)
                      ..+.|+|+|++|++|++    ++.||||+|.|.+.+.   +++||+ |++++|.||+||| +|.| .|...+. .|+++|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46899999999999986    4689999999987542   468999 9987789999999 7999 8865433 445544


Q ss_pred             EEEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          126 FMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       126 ~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                          +|++   |++||.+.|||..|..|    -++++|.......-+.+.|.+.+.+.
T Consensus       752 ----~D~d---~d~iG~~~ipl~~L~~G----~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          752 ----MEEG---NKFLGHRIIPINALNSG----YHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             ----EETT---TEEEEEEEEEGGGBCCE----EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             ----EEeC---CCccceEeeehhhcCCC----cEEEeccCCCCCCCCceEEEEEEEEE
Confidence                7775   89999999999999863    35778853321111346666666653

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=145.68  Aligned_cols=120  Identities=17%  Similarity=0.195  Sum_probs=91.8

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecc-eEEEE-eCcCCC-ceEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNE-NLKLN-VKTVES-SLKCEIFM  127 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNE-tF~F~-V~~~d~-~LkleV~v  127 (430)
                      ...|+|+||+|++|+..    +.||||+|.|.+.+.   .++||+|++++|.||+||| +|.|. |...+. .|+++|  
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V--  797 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAA--  797 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEE--
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEE--
Confidence            46899999999999863    689999999987542   3579999998789999999 69998 754332 455555  


Q ss_pred             EEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCCC
Q 014112          128 MSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPD  188 (430)
Q Consensus       128 ~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p~  188 (430)
                        +|+|   |++||.+.|||..|..|    -+.++|.......-..|.|.+.+.+..-.|+
T Consensus       798 --~D~d---ddfiG~~~lpL~~L~~G----yR~vpL~~~~g~~l~~atLfv~i~~~~~~~~  849 (885)
T 3ohm_B          798 --FEEG---GKFVGHRILPVSAIRSG----YHYVCLRNEANQPLCLPALLIYTEASDYIPD  849 (885)
T ss_dssp             --EETT---TEEEEEEEEETTTCCCE----EEEEEEECTTSCEEEEEEEEEEEEEEECCCG
T ss_pred             --EcCC---ccEEeeEEEEHHHcCCC----ceEEEecCCCCCccCceEEEEEEEEEecCCc
Confidence              7876   89999999999999863    3457775443222246889999988876543

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.39  E-value=1.3e-12  Score=144.22  Aligned_cols=120  Identities=17%  Similarity=0.266  Sum_probs=91.2

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC----CeEEeeeecCCCCCCeecce-EEEE-eCcCCC-ceEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE----NTVSTNIINGGGRNPVFNEN-LKLN-VKTVES-SLKCEIF  126 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~----~k~KTkVikngG~NPvWNEt-F~F~-V~~~d~-~LkleV~  126 (430)
                      .+.|+|+|++|++|++.    +.||||+|.|.+.+.    .++||+|++++|.||+|||+ |.|. |...+. .|+++| 
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V-  723 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIV-  723 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEE-
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEE-
Confidence            47999999999999863    689999999987653    47899999987899999998 9998 765433 455554 


Q ss_pred             EEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCCC
Q 014112          127 MMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASPD  188 (430)
Q Consensus       127 v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p~  188 (430)
                         +|++   |++||.+.|||..|..|    -++++|..........+.|.+.+.+.-..|+
T Consensus       724 ---~D~d---ddfiG~~~ipL~~L~~G----yR~vpL~~~~g~~~~~atLfv~i~~~~~~~~  775 (816)
T 3qr0_A          724 ---SEEN---GKFIGHRVMPLDGIKPG----YRHVPLRNESNRPLGLASVFAHIVAKDYVSD  775 (816)
T ss_dssp             ---EETT---SCEEEEEEEESTTCCCE----EEEEEEECTTSCEEEEEEEEEEEEEEECCC-
T ss_pred             ---EecC---CCeeeEEEEEHHHcCCc----ceEEEEeCCCCCCCCceEEEEEEEEEecCch
Confidence               7764   89999999999999873    3467776443222234678888887766544

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.32  E-value=3.8e-12  Score=136.68  Aligned_cols=105  Identities=28%  Similarity=0.377  Sum_probs=88.1

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC--CceEEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE--SSLKCEIFMMS  129 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d--~~LkleV~v~v  129 (430)
                      .+.|.|+|++|++|...+..|++||||++++.+++  ..+.+|+++++ +.||+|||+|.|.+...+  ..|.++|    
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~-tlnP~wne~f~f~~~~~~~~~~L~v~v----  245 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKS-SLNPEWNETFRFQLKESDKDRRLSVEI----  245 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSS-CSSCEEEEEEEEECCSTTTTCEEEEEE----
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCcccccccccccccc-ccCCCccceeeeecccCCccceeeeEE----
Confidence            46799999999999999999999999999997654  35889999998 699999999999987633  2355544    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      +|.|.+ .|++||.+.++|.++.. .+ ...||.|..
T Consensus       246 ~d~d~~~~dd~iG~~~i~l~~l~~-~~-~~~w~~Lls  280 (674)
T 3pfq_A          246 WDWDLTSRNDFMGSLSFGISELQK-AG-VDGWFKLLS  280 (674)
T ss_dssp             EECCSSSCCEECCBCCCBTTHHHH-CC-EEEEEECBC
T ss_pred             eecccccccccccccccchhhhcc-CC-cccceeecc
Confidence            777777 79999999999999987 33 478998864

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.71  E-value=2.7e-07  Score=80.98  Aligned_cols=117  Identities=12%  Similarity=0.061  Sum_probs=83.7

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC-CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP-ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p-~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      ....|+|.+.++.--.-...---.||||.|.+.... ..+.+|-+.+.-+..|+|||.|.-.|.+. ..|.+.|    ++
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G-r~l~i~V----fh   78 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG-RVIQIVL----MR   78 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT-CEEEEEE----EE
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC-EEEEEEE----Ec
Confidence            357899999888753322222357999999986421 01225534444589999999999999873 3455544    44


Q ss_pred             cccccCceeEEEEEeCcccccc----CceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          132 KNYLEDQLLGFTLVPLSEVLVK----NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       132 ed~v~DdlIG~a~VPLsdLl~~----~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      ...   ++|..+.|++.+|..+    ++..+-|+.|.       |+|+|++.+.|..
T Consensus        79 ~a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe-------P~Gkl~~~i~~~~  125 (126)
T 1yrk_A           79 AAE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ-------PQAKVLMSVQYFL  125 (126)
T ss_dssp             ETT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-------SSCEEEEEEEEEB
T ss_pred             CCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc-------cCcEEEEEEEEee
Confidence            332   8999999999999953    46778899995       8999999999873

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.58  E-value=4e-07  Score=80.94  Aligned_cols=119  Identities=16%  Similarity=0.139  Sum_probs=84.9

Q ss_pred             cceEEEEEEEeccCCCCCC-CCCCCCcEEEEEEeCCCC-CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           53 FIGVLEVYIHQARDIHNIC-IYHKQDVYAKLCLTSDPE-NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~d-i~gk~DPYVkVsL~~~p~-~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ..+.|+|.+.++.-.+-.. .---.||||.|.+...-. ++.+|-+.+.-+..|+|||.|.-.|.+. ..|.+.|    +
T Consensus         8 m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G-r~l~i~V----f   82 (138)
T 2enj_A            8 MSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG-RVMQIIV----K   82 (138)
T ss_dssp             CCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS-CEEEEEE----E
T ss_pred             cCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC-eEEEEEE----E
Confidence            3578999998887644221 123479999999864310 2255522233378999999999999873 3455544    5


Q ss_pred             ecccccCceeEEEEEeCcccccc----CceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          131 VKNYLEDQLLGFTLVPLSEVLVK----NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       131 Ded~v~DdlIG~a~VPLsdLl~~----~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      +...   ++|..+.|++.+|..+    ++..+-|+.|.       |+|+|++.+.|....
T Consensus        83 h~a~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLe-------P~Gkl~v~i~~~~e~  132 (138)
T 2enj_A           83 GKNV---DLISETTVELYSLAERCRKNNGKTEIWLELK-------PQGRMLMNARYFLEM  132 (138)
T ss_dssp             CSSC---SCCEEEEEESHHHHHHHHHTTTCEEEEEECB-------SSCEEEEEEEECCCS
T ss_pred             cCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc-------cCcEEEEEEEEEEec
Confidence            4332   8999999999999953    46778899995       899999999997554

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=94.40  E-value=0.39  Score=43.33  Aligned_cols=129  Identities=14%  Similarity=0.078  Sum_probs=83.0

Q ss_pred             CccceEEEEEEEeccCCCCC-CCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCC--------ce
Q 014112           51 GNFIGVLEVYIHQARDIHNI-CIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVES--------SL  121 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~-di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~--------~L  121 (430)
                      ++.-+.++|.|.+|.--+.. ...+..+|+.-+.+.=-.-+.+.|.++.  |.+|.+|-+-+|.|.-.+.        .+
T Consensus        14 ~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l   91 (156)
T 2yrb_A           14 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTI   91 (156)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCE
T ss_pred             cCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCE
Confidence            34458999999999843211 1123456655444431122578888887  6999999998888854222        35


Q ss_pred             EEEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112          122 KCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       122 kleV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~  185 (430)
                      .++|+    ......-..||.+.|+|.+++...+++...-+|.+.+..-..-|.|.+.|++...
T Consensus        92 ~lELh----qa~g~~~~tla~~~I~l~~lLe~~~~i~g~~~L~g~~g~~~~~G~LeywiRL~~P  151 (156)
T 2yrb_A           92 TLEVH----QAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRLRVS  151 (156)
T ss_dssp             EEEEE----EECSSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEEEEC
T ss_pred             EEEEE----EeeCCCceEEEEEEEEhHHhhCcCCceEEEEEEEcCCCCcceEEEEEEEEEEecc
Confidence            66662    2222245799999999999997655566566776543210247889888887654

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=93.54  E-value=0.68  Score=52.99  Aligned_cols=91  Identities=20%  Similarity=0.202  Sum_probs=59.2

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIF  126 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~  126 (430)
                      ...+.|+|+.|.++. .+.....+.||.+.|.....   ...+|+.+.  +.+|.|||.+.|+|.-.    ...|-+.| 
T Consensus       354 ~~~f~v~i~~~~~~n-~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~--~~~~~Wne~l~f~i~i~dLPr~arL~~tl-  429 (1091)
T 3hhm_A          354 NSALRIKILCATYVN-VNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLNYDIYIPDLPRAARLCLSI-  429 (1091)
T ss_dssp             CSEEEEEEEEESCCC-CCCSSCCCCCEEEEEESSSCSSCCEECCCCCC--TTSCEEEEEEEEEEEGGGCCTTCEEEEEE-
T ss_pred             CCCEEEEEEEecCCC-CCccccceEEEEEEEEECCEEccCceeccccC--CCCCCCCeeEEecCccccCChhcEEEEEE-
Confidence            368899999999885 33334578999999886643   234455433  57899999988876542    22344444 


Q ss_pred             EEEeecccc-----cCceeEEEEEeCcccc
Q 014112          127 MMSRVKNYL-----EDQLLGFTLVPLSEVL  151 (430)
Q Consensus       127 v~v~Ded~v-----~DdlIG~a~VPLsdLl  151 (430)
                         |+....     ....||.+.++|=+..
T Consensus       430 ---~~~~~~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          430 ---CSVKGRKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             ---CCCCCCC-------CCEEEEEESBCTT
T ss_pred             ---EEecCccCcccccceeEEeeeeeEccC
Confidence               543221     2458999999987765

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=93.12  E-value=0.69  Score=43.91  Aligned_cols=58  Identities=12%  Similarity=0.213  Sum_probs=37.3

Q ss_pred             CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc-----ccCceeEEEEEeCcc
Q 014112           90 NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY-----LEDQLLGFTLVPLSE  149 (430)
Q Consensus        90 ~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~-----v~DdlIG~a~VPLsd  149 (430)
                      ..++|-|... .++|.|||++++.|+.. ..-+.-|.|.+|..--     ..+..+|.+.+||-+
T Consensus        77 se~~S~V~YH-nk~P~w~EtIKi~LP~~-~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           77 SEYKSVIYYQ-VKQPRWFETVKVAIPIE-DVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SCEECCCCTT-CSSCCCCEEEEEEECTT-SSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eeEEEEEEEc-CCCCCceEeEEEeeChh-hcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            5788888887 59999999999999872 2111222333342211     124588988888753

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=92.63  E-value=0.67  Score=52.27  Aligned_cols=94  Identities=15%  Similarity=0.223  Sum_probs=58.0

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC---CeEEeeeecCCCCCCeecceEEEEeCcC----CCceEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE---NTVSTNIINGGGRNPVFNENLKLNVKTV----ESSLKCEIF  126 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~---~k~KTkVikngG~NPvWNEtF~F~V~~~----d~~LkleV~  126 (430)
                      ...|.|+|+++.++...   ...+.||.+.|..+..   ....|+.+.- +.+|.|||.+.|+|.-.    +..|.+.||
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~-~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNV-CSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEES-CSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccC-CCCcccceEEEcccccccCCcccEEEEEEE
Confidence            46899999999998643   3578999988875531   2344554432 58899999988876542    335555553


Q ss_pred             EEEee--c-----ccc--cCceeEEEEEeCcccc
Q 014112          127 MMSRV--K-----NYL--EDQLLGFTLVPLSEVL  151 (430)
Q Consensus       127 v~v~D--e-----d~v--~DdlIG~a~VPLsdLl  151 (430)
                      -....  .     +..  .+..||.+.++|=+..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCTT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECCc
Confidence            32110  0     001  2458898888886654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	430
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-13
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	2e-09
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	6e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	8e-09
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	9e-09
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	9e-08
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-07
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	2e-07
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	5e-07
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	1e-05
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-05
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-05
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	2e-05
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	6e-05
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	7e-05
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	2e-04
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	3e-04
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	0.001

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 65.1 bits (158), Expect = 2e-13
 Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 9/135 (6%)

Query: 54  IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
            G LEV +  A+ + +    +  D Y +L           +N+  G G  P +NE     
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTC---RTQDQKSNVAEGMGTTPEWNETFIFT 65

Query: 114 VKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPA 173
           V    + LK +IF         ED  +G   +PL  V V+       +++   +      
Sbjct: 66  VSEGTTELKAKIFDKDVGT---EDDAVGEATIPLEPVFVEGSIPPTAYNVVKDE---EYK 119

Query: 174 GFVQLSLAYAGASPD 188
           G + ++L++  + P 
Sbjct: 120 GEIWVALSFKPSGPS 134

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 2e-09
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 10/129 (7%)

Query: 54  IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
           +G+L+V + +A D+       K D +       +  N            NP +N+     
Sbjct: 5   VGILQVKVLKAADLLAADFSGKSDPFCL----LELGNDRLQTHTVYKNLNPEWNKVFTFP 60

Query: 114 VKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPA 173
           +K +   L+  +F     K       LG   +PL    +++G+    + L + DL  +  
Sbjct: 61  IKDIHDVLEVTVFDEDGDKP---PDFLGKVAIPLLS--IRDGQ-PNCYVLKNKDLEQAFK 114

Query: 174 GFVQLSLAY 182
           G + L +  
Sbjct: 115 GVIYLEMDL 123

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNENLKL 112
             L V + +AR +    +    D Y K+ L    +      T++      N VFNE    
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVF 73

Query: 113 NVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
           ++           F++   +    ++++G  ++  +  
Sbjct: 74  DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 1/97 (1%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP-ENTVSTNIINGGGRNPVFNENLKLN 113
           G L V I +A+++  + +    D Y K+ L  +          I     NP +NE+    
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 114 VKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
           V   +      +  +       ++  +G   V  +  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.7 bits (123), Expect = 9e-09
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
             L V I QA ++  + +    D Y K+ L  D +    T +      NPVFNE     V
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKV 92

Query: 115 KTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
              E   K  +  +     + +  ++G   VP++ V
Sbjct: 93  PYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.7 bits (115), Expect = 9e-08
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 3/98 (3%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKL 112
           G L V I +   +  +      D + KL L  D   +    T I      NP FNE    
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK-KTLNPEFNEEFFY 73

Query: 113 NVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
           ++K  + + K     +        +  +G   + +S  
Sbjct: 74  DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 10/117 (8%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENT--VSTNIINGGGRNPVFNENLKL 112
            VL V +  A+++  +      D Y KL L  DP++     T  I     NP +NE  + 
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-CSLNPEWNETFRF 73

Query: 113 NVKTVE--SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTD 167
            +K  +    L  EI+          +  +G     +SE  ++   ++  F L S +
Sbjct: 74  QLKESDKDRRLSVEIWDWDLTS---RNDFMGSLSFGISE--LQKAGVDGWFKLLSQE 125

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 6/105 (5%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP-ENTVSTNIINGGGRNPVFNENLKLN 113
             L V I  A+D+ +      ++ Y K+    D  +              P +N+    +
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 114 VKTV----ESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKN 154
                   E  L+  ++  +RV+   E + LG  L+ L   L+ +
Sbjct: 74  PVHRREFRERMLEITLWDQARVREE-ESEFLGEILIELETALLDD 117

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.7 bits (110), Expect = 5e-07
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNENLKL 112
           G+L V I +A ++  + +    D Y K  L S+        T+I      NP +NE L  
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALVF 78

Query: 113 NVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEV 150
           +V             +        ++++G   V     
Sbjct: 79  DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAA 116

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 13/127 (10%)

Query: 57  LEVYIHQARDIHNIC---IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
             V + +A  +       +    D Y +L +++ P++   T   N    NPV+NE  +  
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-INPVWNETFEFI 63

Query: 114 VKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPA 173
           +   +   +  + +     NY+ D+ LG     +S  +    K E  F  +         
Sbjct: 64  LDPNQ---ENVLEITLMDANYVMDETLGTATFTVSS-MKVGEKKEVPFIFNQVT-----E 114

Query: 174 GFVQLSL 180
             +++SL
Sbjct: 115 MVLEMSL 121

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 7/107 (6%)

Query: 55  GVLEVYIHQARDIHNICIY-HKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
               V I +AR +  +       D Y K+ +  + ++ V T ++     +P F+E     
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT-LDPAFDETFTFY 80

Query: 114 VKTVESSLKCEIFMMSRVKNY---LEDQLLGFTLVPLSEVLVKNGKL 157
              +  +   E+ +   + ++     D ++G  L+PLS + +  GK+
Sbjct: 81  G--IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM 125

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 7/105 (6%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
             L V I QA D+         D Y K+ L  D +    T +      NP+FNE  + +V
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQFSV 76

Query: 115 KTVE---SSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGK 156
              E     L   ++   R        L+G  ++     L +   
Sbjct: 77  PLAELAQRKLHFSVYDFDRFS---RHDLIGQVVLDNLLELAEQPP 118

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 54  IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN 113
           + +L V + +A+         K + Y  L          +T  +   G  P + ++    
Sbjct: 1   MSLLCVGVKKAKFDGA---QEKFNTYVTLK---VQNVKSTTIAVR--GSQPSWEQDFMFE 52

Query: 114 VKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKE-FSLSS 165
           +  ++  L  E++     K  + D ++G   +PL  +   N +   E  +L S
Sbjct: 53  INRLDLGLTVEVWN----KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDS 101

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 6e-05
 Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 12/132 (9%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
             L++ +  A+   N   +     Y ++ +    +             +P + + L + V
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTV----DGQSKKTEKCNNTNSPKWKQPLTVIV 61

Query: 115 KTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNG----KLEKEFSLSSTDLFH 170
             V        F +   +    D LLG   + + E L  N     ++     L       
Sbjct: 62  TPV----SKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPT 117

Query: 171 SPAGFVQLSLAY 182
              G + + L  
Sbjct: 118 ETIGDLSICLDG 129

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 40.3 bits (93), Expect = 7e-05
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 26/146 (17%)

Query: 53  FIGVLEVYIHQARDIHNICIYHKQ-----------DVYAKLCLTSDPENTVSTNIINGGG 101
           F G+L++ I +A  +       +            D Y  L    D      T       
Sbjct: 4   FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN--VDDSRIGQTATKQ-KT 60

Query: 102 RNPVFNENLKLNVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGK-LEKE 160
            +P +++    +V      ++  +F  + +        +    +   E+L    +  E  
Sbjct: 61  NSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYD---DFVANCTIQFEELLQNGSRHFEDW 116

Query: 161 FSLSSTDLFHSPAGFVQLSLAYAGAS 186
             L        P G V + +  +G+S
Sbjct: 117 IDL-------EPEGKVYVIIDLSGSS 135

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 3/102 (2%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNV 114
             L V   +A            D Y +  + +   +  +   +     +  + E L L +
Sbjct: 26  AELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPL 82

Query: 115 KTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGK 156
              E         +     +    + G   + L    V  G 
Sbjct: 83  AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGA 124

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 18/123 (14%)

Query: 55  GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIING----------GGRNP 104
           G L ++I QAR++         D + K+ L       +     +              NP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 105 VFNENLKLNVKTV----ESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKE 160
            +N+ +     ++    + +L+  ++   R  +   +  LG  L+ LS          + 
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSS---NDFLGEVLIDLSS-TSHLDNTPRW 133

Query: 161 FSL 163
           + L
Sbjct: 134 YPL 136

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 57  LEVYIHQARDIH--NICIYHKQDVYAKLCLTSDPENTVS--TNIINGGGRNPVFNENLKL 112
           L V I   + +   N       D    + +     +T S  T +I   G NP ++   + 
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 113 NVKTVESSLKCEIFMMSRVKNYLEDQLLGFTLVPLSE 149
            V      L    FM+    +  ++  +G + +P + 
Sbjct: 66  EV--TVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNS 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	430
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.91
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.89
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.87
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.83
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.79
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.78
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.78
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.78
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.75
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.74
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.73
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.72
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.71
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.66
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.65
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.65
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.65
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.61
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.53
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.51
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.09
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	89.09

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.5e-24  Score=185.88  Aligned_cols=127  Identities=23%  Similarity=0.373  Sum_probs=108.3

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      ..++|+|+|+|++|++|++.+.++++||||++++.+   .+++|+++++++.||+|||+|.|.|......|+++|    +
T Consensus         6 ~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~---~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V----~   78 (136)
T d1wfja_           6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT---QDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKI----F   78 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS---CEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEE----C
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee---eeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEE----E
Confidence            567899999999999999999999999999999976   688999999878999999999999987555566655    8


Q ss_pred             ecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEccCC
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGASP  187 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~p  187 (430)
                      |++.+ .|++||.+.|||.++...+.....||.|...   ++++|+|+|+|+|.|..|
T Consensus        79 d~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~---~~~~G~i~l~l~~~p~~p  133 (136)
T d1wfja_          79 DKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD---EEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             CSSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEET---TEEEEEEEEEEEEEECCS
T ss_pred             EecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecCC---CccCEEEEEEEEEEeCCC
Confidence            98887 6999999999999997644445679988532   246899999999998764

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.7e-23  Score=174.59  Aligned_cols=122  Identities=20%  Similarity=0.282  Sum_probs=104.7

Q ss_pred             CccceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEe
Q 014112           51 GNFIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSR  130 (430)
Q Consensus        51 ~~~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~  130 (430)
                      -.++|.|+|+|++|+||+..+..|++||||++++..   ++++|+++++ +.||+|||+|.|.+......|.++|    +
T Consensus         2 ~~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~---~~~~T~~~~~-t~nP~wne~f~f~v~~~~~~L~i~V----~   73 (126)
T d2ep6a1           2 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN---DRLQTHTVYK-NLNPEWNKVFTFPIKDIHDVLEVTV----F   73 (126)
T ss_dssp             CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT---EEEECCCCSS-CSSCCCCEEEEEEESCTTCEEEEEE----E
T ss_pred             CCccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC---eEEEEEeeCC-ceeEEEEEEEEEEEeccCceeEEEE----E
Confidence            356899999999999999999999999999999965   6899999987 7999999999999987656666655    7


Q ss_pred             ecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                      |++.+ .|++||.+.|+|.++..+ .  .+||.|...++....+|.|+|+++|.
T Consensus        74 d~~~~~~d~~lG~~~i~l~~l~~~-~--~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          74 DEDGDKPPDFLGKVAIPLLSIRDG-Q--PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEETTEEEEECCBCEEEGGGCCSS-C--CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             EccCCcCcceEEEEEEEHHHCCCC-C--ceEEEccccCCCCceeEEEEEEEEEE
Confidence            88777 689999999999999753 2  47898876666666789999999986

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.7e-22  Score=169.10  Aligned_cols=120  Identities=23%  Similarity=0.338  Sum_probs=100.7

Q ss_pred             ceEEEEEEEeccCCCCC---CCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC-CceEEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNI---CIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE-SSLKCEIFMMS  129 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~---di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d-~~LkleV~v~v  129 (430)
                      .+.|+|+|++|+||+..   +++|++||||++++.+...+++||+++++ +.||+|||+|.|.+.... ..|+++|    
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~f~i~~~~~~~L~v~V----   76 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPNQENVLEITL----   76 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTTSCCEEEEEE----
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCC-CccceeceeeeecccCcccCcEEEEE----
Confidence            47899999999999974   45689999999999876667899999887 699999999999998743 3556655    


Q ss_pred             eecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEEEc
Q 014112          130 RVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAYAG  184 (430)
Q Consensus       130 ~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p  184 (430)
                      +|++..+|++||.+.|+|++|.. +.....||+|..     ...|.|+++|++.+
T Consensus        77 ~d~d~~~d~~lG~~~i~L~~l~~-~~~~~~~~~L~~-----~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          77 MDANYVMDETLGTATFTVSSMKV-GEKKEVPFIFNQ-----VTEMVLEMSLEVAS  125 (126)
T ss_dssp             EECCSSCCEEEEEEEEEGGGSCT-TCEEEEEEEETT-----TEEEEEEEEEECCC
T ss_pred             EECCCCCCCeEEEEEEEHHHccC-CCeEEEEEEccC-----CCeEEEEEEEEEEe
Confidence            88888889999999999999987 566778999963     24788999888765

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.83  E-value=2.3e-20  Score=160.95  Aligned_cols=119  Identities=18%  Similarity=0.266  Sum_probs=97.6

Q ss_pred             cceEEEEEEEeccCCCCCC-----------CCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCce
Q 014112           53 FIGVLEVYIHQARDIHNIC-----------IYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSL  121 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~d-----------i~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~L  121 (430)
                      ..|.|+|+|++|++|+..+           ..+..||||+|++...  ...+|+++++ +.||+|||+|.|.+.+. ..|
T Consensus         4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~--~~~~T~~~~~-t~~P~Wne~f~f~v~~~-~~l   79 (136)
T d1gmia_           4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDS--RIGQTATKQK-TNSPAWHDEFVTDVCNG-RKI   79 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTE--EEEECCCCSS-CSSCEEEEEEEEEEEEE-CEE
T ss_pred             EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCC--cCcEeeEEcC-CCCccCccEEEEEEecC-Cce
Confidence            4699999999999999753           3567899999999642  4568988876 79999999999999763 345


Q ss_pred             EEEEEEEEeecccc-cCceeEEEEEeCccccccC-ceeeEEEEccCCCCCCCCCcEEEEEEEEEccC
Q 014112          122 KCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKN-GKLEKEFSLSSTDLFHSPAGFVQLSLAYAGAS  186 (430)
Q Consensus       122 kleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~-~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~~  186 (430)
                      .++|    +|++.+ +|++||.+.|+|.++...+ ...+.||+|.       |+|+|+|.|+|.++.
T Consensus        80 ~i~V----~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~-------p~G~v~l~v~~~~~~  135 (136)
T d1gmia_          80 ELAV----FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE-------PEGKVYVIIDLSGSS  135 (136)
T ss_dssp             EEEE----EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECB-------SSCEEEEEEEEEEEE
T ss_pred             EEEE----EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCC-------CCcEEEEEEEEEeCC
Confidence            5544    888877 6999999999999998643 3466899994       799999999999864

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=5.1e-19  Score=151.07  Aligned_cols=120  Identities=13%  Similarity=0.177  Sum_probs=88.5

Q ss_pred             eEEEEEEEeccCCCC--CCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC-CceEEEEEEEE
Q 014112           55 GVLEVYIHQARDIHN--ICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE-SSLKCEIFMMS  129 (430)
Q Consensus        55 g~L~VtVisArnLkn--~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d-~~LkleV~v~v  129 (430)
                      ..|+|+|++|++|+.  .+..++.||||+|+|.+.+  ..++||+++++++.||+|||+|.|.+.... ..|+++|    
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V----   79 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMV----   79 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEE----
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEE----
Confidence            579999999999964  5567899999999997643  368899999887789999999999987633 3455555    


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                      +|+|.+ .|++||++.|||..+..+    .+|++|.......-+.+.|.+.+++
T Consensus        80 ~D~d~~~~d~~iG~~~i~l~~l~~g----~~~~~L~~~~g~~~~~~~L~v~i~~  129 (131)
T d1qasa2          80 EDYDSSSKNDFIGQSTIPWNSLKQG----YRHVHLLSKNGDQHPSATLFVKISI  129 (131)
T ss_dssp             EECCTTTCCEEEEEEEEEGGGBCCE----EEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             EEecCCCCCcEEEEEEEEEeccCCC----CEEEECCCCCcCCCCCCEEEEEEEE
Confidence            888877 589999999999999763    4688885433221234566666655

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.1e-19  Score=153.39  Aligned_cols=121  Identities=20%  Similarity=0.226  Sum_probs=92.4

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecc
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKN  133 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded  133 (430)
                      .+.|+|+|++|++|++.+.++++||||+|.+++   ++++|+++++ +.||+|||.|.|.+... ..|+++|    ||++
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~---~~~kT~v~~~-t~nP~wne~f~f~~~~~-~~l~~~V----~d~d   75 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG---QSKKTEKCNN-TNSPKWKQPLTVIVTPV-SKLHFRV----WSHQ   75 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT---EEEECCCCSS-CSSCEEEEEEEEEECTT-CEEEEEE----EECC
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC---eEEeeEEEEe-cccEEEcceEEEEEEec-ceeEEEE----EEcc
Confidence            378999999999999999999999999999976   6899999876 79999999999999863 4455555    8888


Q ss_pred             cc-cCceeEEEEEeCcccccc-Cce---eeEEEEccCCCCCCCCCcEEEEEEEEE
Q 014112          134 YL-EDQLLGFTLVPLSEVLVK-NGK---LEKEFSLSSTDLFHSPAGFVQLSLAYA  183 (430)
Q Consensus       134 ~v-~DdlIG~a~VPLsdLl~~-~~~---l~~~f~Lss~dl~~~p~G~I~LsLsf~  183 (430)
                      .+ .|++||++.|+|.+++.. ++.   ...++.|..........|.|.+.|.+.
T Consensus        76 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          76 TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL  130 (133)
T ss_dssp             SSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             CCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence            77 699999999999998753 222   233444433222223568888887754

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=7.2e-19  Score=151.78  Aligned_cols=106  Identities=25%  Similarity=0.266  Sum_probs=90.0

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEEe
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMSR  130 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v~  130 (430)
                      .+.|+|+|++|+||+..+..+..||||+|+|.++..++++|+++++ +.||+|||+|.|.|...   ...|+++|    +
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~-t~~P~wne~f~f~i~~~~l~~~~L~i~V----~  107 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSELGGKTLVMAV----Y  107 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHHTTCEEEEEE----E
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEecc-ccCcceeeeeEEEEEeeccCCceEEEEE----E
Confidence            4689999999999999999999999999999877667899999887 79999999999998752   23455554    8


Q ss_pred             ecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          131 VKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       131 Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      |.+.+ ++++||.+.|+|.++.. +....+||+|.+
T Consensus       108 d~d~~~~~~~iG~~~i~L~~~~~-~~~~~~W~~L~s  142 (143)
T d1rsya_         108 DFDRFSKHDIIGEFKVPMNTVDF-GHVTEEWRDLQS  142 (143)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGCCC-SSCEEEEEECBC
T ss_pred             EcCCCCCCcEEEEEEEEchhccC-CCCCccEEeCCC
Confidence            88877 68899999999999986 466679999953

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=6.3e-19  Score=150.02  Aligned_cols=105  Identities=25%  Similarity=0.311  Sum_probs=87.2

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCC--CceEEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVE--SSLKCEIFMMS  129 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d--~~LkleV~v~v  129 (430)
                      .+.|.|+|++|+||+..+..|..||||+++|.++.  ..++||+++++ +.||+|||+|.|.+....  ..|.+    .+
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~~~~L~i----~V   88 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESDKDRRLSV----EI   88 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGGGGCEEEE----EE
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecC-CCCCccceEEEEEeEccccCCEEeE----EE
Confidence            37899999999999999999999999999996653  35889999987 799999999999987632  23444    44


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      +|+|.+ .|++||.+.|+|.++..  +..++||+|..
T Consensus        89 ~d~d~~~~d~~iG~~~i~l~~l~~--~~~~~W~~L~~  123 (132)
T d1a25a_          89 WDWDLTSRNDFMGSLSFGISELQK--AGVDGWFKLLS  123 (132)
T ss_dssp             EECCSSSCCEEEEEEEEEHHHHTT--CCEEEEEECBC
T ss_pred             EecCCCCCCcEeEEEEEeHHHcCC--CCCCeEEECCC
Confidence            888877 68999999999999875  34678999963

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=5.3e-18  Score=146.12  Aligned_cols=116  Identities=17%  Similarity=0.268  Sum_probs=90.4

Q ss_pred             eEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeeccc
Q 014112           55 GVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKNY  134 (430)
Q Consensus        55 g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded~  134 (430)
                      +.|.|+|+.|++|...+   ++||||+|.+..   .+.+|++++  |.||+|||+|.|.+......|.++|    +|++.
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~---~k~~T~~~k--~~nP~Wne~f~f~v~~~~~~L~v~V----~d~~~   69 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN---VKSTTIAVR--GSQPSWEQDFMFEINRLDLGLTVEV----WNKGL   69 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETT---EEEECCCEE--SSSCEEEEEEEEEECCCSSEEEEEE----EECCS
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCC---EEEEEEEec--CCCCeEEEEEEEeeccccceEEEEE----EeCCC
Confidence            68999999999999866   689999999965   688999886  4699999999999988766666665    78888


Q ss_pred             ccCceeEEEEEeCccccccCc-eeeEEEEccCCCCC------C---CCCcEEEEEEEE
Q 014112          135 LEDQLLGFTLVPLSEVLVKNG-KLEKEFSLSSTDLF------H---SPAGFVQLSLAY  182 (430)
Q Consensus       135 v~DdlIG~a~VPLsdLl~~~~-~l~~~f~Lss~dl~------~---~p~G~I~LsLsf  182 (430)
                      +.|++||.+.|||+++...+. ...+||+|......      +   .....|+|++.|
T Consensus        70 ~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~~~~~gei~gt~~~~~~~~ll~~~~  127 (128)
T d2cjta1          70 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF  127 (128)
T ss_dssp             SCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred             cCCcceEEEEEEehhhccCCCCCCCeeEECCccccCCCCEEEeeecCCCcEEEEEEEc
Confidence            889999999999999986432 34589999643211      0   124566666666

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=4.3e-18  Score=144.83  Aligned_cols=107  Identities=21%  Similarity=0.181  Sum_probs=86.8

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFMMS  129 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v~v  129 (430)
                      ..+.|+|+|++|+||+..+..+..||||+|+|.++..+++||+++++ +.||+|||+|.|.|...   ...|+++|    
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~~~~~L~v~V----   90 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAELAQRKLHFSV----   90 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGGSSCCCEEEE----
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHcCCCeEEEEE----
Confidence            45799999999999999999999999999999776667899999987 79999999999998763   23455555    


Q ss_pred             eecccc-cCceeEEEEEeCcccccc-CceeeEEEEcc
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVK-NGKLEKEFSLS  164 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~-~~~l~~~f~Ls  164 (430)
                      +|++.+ +|++||.+.|++...+.. ......||+|.
T Consensus        91 ~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~  127 (130)
T d1dqva1          91 YDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL  127 (130)
T ss_dssp             EECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB
T ss_pred             EEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEecc
Confidence            888876 699999999997654432 22345699995

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=8.7e-19  Score=149.87  Aligned_cols=106  Identities=19%  Similarity=0.227  Sum_probs=85.5

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC-----------CeEEeeeecCCCCCCeecceEEEEeCcC----C
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE-----------NTVSTNIINGGGRNPVFNENLKLNVKTV----E  118 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~-----------~k~KTkVikngG~NPvWNEtF~F~V~~~----d  118 (430)
                      .|.|.|+|++|+||+..+..+..||||+|+|.+...           .++||+++++ +.||+|||+|.|.+-..    .
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~~~   95 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcC-CCCceeEEEEEEeeecccccCC
Confidence            478999999999999999999999999999954321           2468999987 69999999999984431    2


Q ss_pred             CceEEEEEEEEeecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          119 SSLKCEIFMMSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       119 ~~LkleV~v~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      ..|.++    ++|++.+ +|++||.+.|+|.++.. +....+||+|..
T Consensus        96 ~~L~i~----V~d~d~~~~~~~lG~~~i~L~~l~~-~~~~~~W~~L~~  138 (142)
T d1rh8a_          96 KTLEVT----VWDYDRFSSNDFLGEVLIDLSSTSH-LDNTPRWYPLKE  138 (142)
T ss_dssp             CEEEEE----EEEECSSSCEEEEEEEEEETTSCGG-GTTCCEEEECBC
T ss_pred             CEEEEE----EEEecCCCCCeeeEEEEEEhHHcCC-CCCceEEEECcC
Confidence            234444    4888876 68999999999999987 355679999964

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.1e-17  Score=142.11  Aligned_cols=108  Identities=19%  Similarity=0.324  Sum_probs=83.5

Q ss_pred             ceEEEEEEEeccCCCCCCCCCC-CCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEE-eCcCCCceEEEEEEEEee
Q 014112           54 IGVLEVYIHQARDIHNICIYHK-QDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLN-VKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk-~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~-V~~~d~~LkleV~v~v~D  131 (430)
                      .+.|+|+|++|+||+..+..+. .||||+++|.++...++||+++++ +.||+|||+|.|. +... ..-...|.|.++|
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~-~l~~~~L~~~V~d   98 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYT-QIQELALHFTILS   98 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCST-TGGGCEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeC-CCCCceeeEEEEeeeCHH-HcccceEEEEEEE
Confidence            4689999999999999887764 799999999877667899999987 7999999999997 4432 2111123344488


Q ss_pred             cccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          132 KNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                      .+.+ +|++||++.|+|.++....+....|..+
T Consensus        99 ~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~  131 (138)
T d1ugka_          99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI  131 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEEC
T ss_pred             CCCCCCCcEEEEEEEEcccccCCCCeEEEEeec
Confidence            7776 6999999999999997544555555555

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-17  Score=139.58  Aligned_cols=106  Identities=20%  Similarity=0.204  Sum_probs=80.4

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEE-eCcCCCceEEEEEEEEe
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLN-VKTVESSLKCEIFMMSR  130 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~-V~~~d~~LkleV~v~v~  130 (430)
                      .+.|+|+|++|+||+..+..+..||||+|+|.++.  ..++||+++++ +.||+|||+|.|. +...+. ....|.+.++
T Consensus        13 ~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~f~~~~~~~l-~~~~L~i~v~   90 (125)
T d2bwqa1          13 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF-RERMLEITLW   90 (125)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGG-GGCEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcC-CCCCEEccEEEEeeeChhhc-CCCEEEEEEE
Confidence            47899999999999999989999999999996543  35789999986 7999999999997 554221 1112334447


Q ss_pred             ecccc---cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          131 VKNYL---EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       131 Ded~v---~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                      |.+.+   ++++||.+.|+|+++... + ..+||+|
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~~-~-~~~Wy~L  124 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALLD-D-EPHWYKL  124 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCS-S-CEEEEEC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCCC-C-CCEEEeC
Confidence            77765   367999999999999863 3 3579998

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-16  Score=135.34  Aligned_cols=103  Identities=16%  Similarity=0.071  Sum_probs=82.8

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC-CCeEEeeeecCCCCCCeecceEEEEeCcCC---CceEEEEEEEE
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP-ENTVSTNIINGGGRNPVFNENLKLNVKTVE---SSLKCEIFMMS  129 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p-~~k~KTkVikngG~NPvWNEtF~F~V~~~d---~~LkleV~v~v  129 (430)
                      .+.|.|+|++|++|..   .+..||||+|+|.+.. ..+++|+++++ +.||+|||+|.|.|...+   ..|+++    +
T Consensus        25 ~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~-~~~P~wne~f~f~v~~~~l~~~~L~~~----V   96 (138)
T d1wfma_          25 KAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEELPTATLTLT----L   96 (138)
T ss_dssp             TTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSSTTCEEEEE----E
T ss_pred             CCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECC-CCCceEeeeEEEEeeehhccceEEEEE----E
Confidence            4789999999999953   5778999999997653 23678999987 799999999999987632   234444    4


Q ss_pred             eecccc-cCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          130 RVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       130 ~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                      +|.+.+ +|++||++.|+|.++.. ....+.||.|..
T Consensus        97 ~d~~~~~~~~~iG~~~i~L~~l~~-~~~~~~W~~L~~  132 (138)
T d1wfma_          97 RTCDRFSRHSVAGELRLGLDGTSV-PLGAAQWGELKT  132 (138)
T ss_dssp             EECCSSCTTSCSEEEEEESSSSSS-CTTCCEEEECCC
T ss_pred             eeecccccceeeeEEEEEhHHccC-CCCceEeEeCCC
Confidence            887777 69999999999999976 455689999964

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=6.3e-16  Score=131.10  Aligned_cols=96  Identities=21%  Similarity=0.168  Sum_probs=76.8

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      .+.|+|+|++|+||+..+..+..||||+++|.++.  ..++||+++++ +.||+|||+|.|.|...+.. ...|.+.+++
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~-~~~l~v~v~~   91 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDLA-KKSLDISVWD   91 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGGG-GCEEEEEEEE
T ss_pred             CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcC-CCCCccceEEEEEeEHHHcc-ccEEEEEeee
Confidence            57899999999999999988999999999997542  35789999987 79999999999999763221 1123334477


Q ss_pred             cccc-cCceeEEEEEeCcccc
Q 014112          132 KNYL-EDQLLGFTLVPLSEVL  151 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdLl  151 (430)
                      .+.+ +|++||.+.|+|..+.
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKG  112 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCH
T ss_pred             CCCCCCCCEEEEEEeCccccC
Confidence            7776 6999999999998653

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=2.9e-16  Score=137.61  Aligned_cols=109  Identities=19%  Similarity=0.297  Sum_probs=84.9

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      .+.|.|+|++|+||+..+..+.+||||+|.|.....  .++||+++++ +.||+|||+|.|.|...+. ....|.+.++|
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~F~v~~~~l-~~~~l~i~v~d  101 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQI-QKVQVVVTVLD  101 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGG-GGCEEEEEEEE
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccC-CCCcccCCeEEEEecHHHc-CccEEEEEEcc
Confidence            479999999999999999999999999999976532  3568999875 7999999999999976322 12234445588


Q ss_pred             cccc-cCceeEEEEEeCccc----------ccc-CceeeEEEEcc
Q 014112          132 KNYL-EDQLLGFTLVPLSEV----------LVK-NGKLEKEFSLS  164 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdL----------l~~-~~~l~~~f~Ls  164 (430)
                      .+.+ ++++||.+.|+|..+          +.. .....+||.|.
T Consensus       102 ~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~  146 (157)
T d1uowa_         102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ  146 (157)
T ss_dssp             CCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             cCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCC
Confidence            8877 699999999999763          221 23456899985

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.6e-16  Score=133.86  Aligned_cols=95  Identities=16%  Similarity=0.193  Sum_probs=71.2

Q ss_pred             ceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEee
Q 014112           54 IGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRV  131 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~D  131 (430)
                      .+.|.|+|++|+||+..+..+.+||||+++|.++..  .++||+++++ +.||+|||+|.|.|...+.. ...|.+.++|
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~-~~~l~i~v~d   91 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESLE-EISVEFLVLD   91 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSST-TEEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHhC-ccEEEEEEEe
Confidence            468999999999999999999999999999965432  3668999887 79999999999998763321 1224455588


Q ss_pred             cccc-cCceeEEEEEeCccc
Q 014112          132 KNYL-EDQLLGFTLVPLSEV  150 (430)
Q Consensus       132 ed~v-~DdlIG~a~VPLsdL  150 (430)
                      .+.+ +|++||.+.|+|...
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          92 SERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             CCTTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCCCEEEEEEEcchhC
Confidence            8877 699999999999864

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=2.4e-15  Score=127.99  Aligned_cols=112  Identities=10%  Similarity=0.086  Sum_probs=83.8

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC--CCeEEeeeecCCCCCCeecceEEEEeCcCCCceEEEEEEEEeecc
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP--ENTVSTNIINGGGRNPVFNENLKLNVKTVESSLKCEIFMMSRVKN  133 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p--~~k~KTkVikngG~NPvWNEtF~F~V~~~d~~LkleV~v~v~Ded  133 (430)
                      .+.|.++.+..++.  ..+..||||+|.|.+..  ....+|++.++ +.||+|||+|.|.|.+. ..|.+.|    +|++
T Consensus         6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kk-T~nP~WnE~F~~~v~~~-~~l~i~V----~d~d   77 (123)
T d1bdya_           6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKP-TMYPEWKSTFDAHIYEG-RVIQIVL----MRAA   77 (123)
T ss_dssp             EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSC-CBCCCTTCEEEEECCTT-CEEEEEE----EEET
T ss_pred             EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCC-CCCcccceEEEEEEccc-cEEEEEE----EEcc
Confidence            34455555554444  46889999999996532  23456887776 89999999999999873 4455544    6654


Q ss_pred             cccCceeEEEEEeCcccccc----CceeeEEEEccCCCCCCCCCcEEEEEEEEEcc
Q 014112          134 YLEDQLLGFTLVPLSEVLVK----NGKLEKEFSLSSTDLFHSPAGFVQLSLAYAGA  185 (430)
Q Consensus       134 ~v~DdlIG~a~VPLsdLl~~----~~~l~~~f~Lss~dl~~~p~G~I~LsLsf~p~  185 (430)
                         |+++|.+.++|.+|...    ++..+.|++|.       |+|+|+|+++|..+
T Consensus        78 ---d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-------~~Gkl~l~v~~f~e  123 (123)
T d1bdya_          78 ---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-------PQAKVLMCVQYFLE  123 (123)
T ss_dssp             ---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-------SSCEEEEEEEEEEC
T ss_pred             ---ccccCccEEehhheeeccccCCCcccEEEeCC-------CCEEEEEEEEEecC
Confidence               78999999999999752    45677899994       79999999999863

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.8e-15  Score=129.05  Aligned_cols=104  Identities=22%  Similarity=0.281  Sum_probs=81.5

Q ss_pred             cceEEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCCC--CeEEeeeecCCCCCCeecceEEEEeCcC---CCceEEEEEE
Q 014112           53 FIGVLEVYIHQARDIHNICIYHKQDVYAKLCLTSDPE--NTVSTNIINGGGRNPVFNENLKLNVKTV---ESSLKCEIFM  127 (430)
Q Consensus        53 ~~g~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p~--~k~KTkVikngG~NPvWNEtF~F~V~~~---d~~LkleV~v  127 (430)
                      ..|.|+|+|++|+||+..+..+..||||++.|.++..  .++||+++++ +.||+|||+|.|.|...   ...|.+.|  
T Consensus        18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~~~~~l~v~v--   94 (145)
T d1dqva2          18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESVENVGLSIAV--   94 (145)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGGGSCCCCCEE--
T ss_pred             CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeC-CCCceecceEEEEEehhhcCCCEEEEEE--
Confidence            3579999999999999999999999999999987543  3679999986 79999999999998752   22344444  


Q ss_pred             EEeecccc-cCceeEEEEEeCccccccCceeeEEEEc
Q 014112          128 MSRVKNYL-EDQLLGFTLVPLSEVLVKNGKLEKEFSL  163 (430)
Q Consensus       128 ~v~Ded~v-~DdlIG~a~VPLsdLl~~~~~l~~~f~L  163 (430)
                        +|.+.+ +|++||.+.|+|..+... + ...||.|
T Consensus        95 --~d~~~~~~~~~iG~~~i~l~~~~~~-~-~~~W~~l  127 (145)
T d1dqva2          95 --VDYDCIGHNEVIGVCRVGPEAADPH-G-REHWAEM  127 (145)
T ss_dssp             --EECCSSSCCEEEEECCCSSCTTCHH-H-HHHHHTS
T ss_pred             --EecCCCCCCcEEEEEEECchHcCch-h-hHHHHHH
Confidence              777776 689999999999876431 1 2345555

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.5e-14  Score=118.53  Aligned_cols=95  Identities=18%  Similarity=0.327  Sum_probs=69.5

Q ss_pred             EEEEEEEeccCCCCCCCCCCCCcEEEEEEeCCC---CCeEEeeee-cCCCCCCeecce-EEEE-eCcCCC-ceEEEEEEE
Q 014112           56 VLEVYIHQARDIHNICIYHKQDVYAKLCLTSDP---ENTVSTNII-NGGGRNPVFNEN-LKLN-VKTVES-SLKCEIFMM  128 (430)
Q Consensus        56 ~L~VtVisArnLkn~di~gk~DPYVkVsL~~~p---~~k~KTkVi-kngG~NPvWNEt-F~F~-V~~~d~-~LkleV~v~  128 (430)
                      +|+|+||+|++|+..    +.||||+|.|.+.+   .++.+|+++ +++|.||+|||+ |.|. +...+. .|++.|   
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V---   74 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV---   74 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE---
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEE---
Confidence            699999999999875    47999999997643   345556554 566899999976 5443 444333 345544   


Q ss_pred             EeecccccCceeEEEEEeCccccccCceeeEEEEccC
Q 014112          129 SRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSS  165 (430)
Q Consensus       129 v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss  165 (430)
                       +|++   |++||++.+||+.+..|    -++.+|..
T Consensus        75 -~D~d---~~~lG~~~ipl~~l~~G----yR~vpL~~  103 (122)
T d2zkmx2          75 -MEEG---NKFLGHRIIPINALNSG----YHHLCLHS  103 (122)
T ss_dssp             -EETT---TEEEEEEEEEGGGBCCE----EEEEEEEC
T ss_pred             -ECCC---CCEEEEEEEEcccCcCC----ceEEEccC
Confidence             7764   89999999999999873    35667754

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.09  E-value=2  Score=36.07  Aligned_cols=121  Identities=15%  Similarity=0.155  Sum_probs=77.8

Q ss_pred             ceEEEEEEEeccCCCCC-CC--CCCCCcEEEEEEeCCCCCeEEeeeecCCCCCCeecceEEEEeCcCC--------CceE
Q 014112           54 IGVLEVYIHQARDIHNI-CI--YHKQDVYAKLCLTSDPENTVSTNIINGGGRNPVFNENLKLNVKTVE--------SSLK  122 (430)
Q Consensus        54 ~g~L~VtVisArnLkn~-di--~gk~DPYVkVsL~~~p~~k~KTkVikngG~NPvWNEtF~F~V~~~d--------~~Lk  122 (430)
                      -+.++|.|.++.-=+.. ..  -...-.||.+....-  ..+.|.++.  |.+|.+|-+-.|.|.-.+        ..+.
T Consensus         9 EnlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~--Etq~TPv~~--g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~   84 (142)
T d2yrba1           9 ENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDF--ELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   84 (142)
T ss_dssp             CEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTC--CCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             CcEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEee--eeecCceec--CCCCcceeEEEEEEccCHHHHHHHhhCCEE
Confidence            47788888888322211 01  123456777776543  567788876  699999999888877532        2456


Q ss_pred             EEEEEEEeecccccCceeEEEEEeCccccccCceeeEEEEccCCCCCCCCCcEEEEEEEE
Q 014112          123 CEIFMMSRVKNYLEDQLLGFTLVPLSEVLVKNGKLEKEFSLSSTDLFHSPAGFVQLSLAY  182 (430)
Q Consensus       123 leV~v~v~Ded~v~DdlIG~a~VPLsdLl~~~~~l~~~f~Lss~dl~~~p~G~I~LsLsf  182 (430)
                      ++|    +-.....-..|+.+.|.|.+++...+++...-.|......+..-|.|.+-++.
T Consensus        85 lel----hqa~g~~~~tvA~g~i~l~~lLd~~~r~~~s~~l~g~~~~~~~~G~leyw~rl  140 (142)
T d2yrba1          85 LEV----HQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPNFGTVEYWFRL  140 (142)
T ss_dssp             EEE----EEECSSCEEEEEEEEECCSHHHHCCSCEEEEEEECBSSSCCTTSEEEEEEEEE
T ss_pred             EEE----EeecCCCcceeEEEEEEhhHhhCccccccceeEEEccCCCcceEEEEEEEEEE
Confidence            666    32222245689999999999998656666666775543222236777776664