Citrus Sinensis ID: 014122

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
ccccccccccccccccccEEEEEEEccccEEEEEccccEEEEEEccccccccccccccEEEEEEccccccccEEEEEccccEEEEEEccccEEEEEcccccccccccccccEEEEEEEccccccEEEEEcccccEEEEcccccEEEEEcccccccccccccccccEEEEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEcccccccccccccccEEEEEccccEEEEEEcccEEEEcccccccccccccccccccccccccccccccEEEEcccccEEEEEEcccccEEEEEEEc
ccccccccccEEEEcccEEEEEEEccccEEEEEEccccEEEEEEccccccccccccccccccEEHHHHccccEEEEEEcccEEEEEEcccEEEEEEcccccccccccccccccccEEEHHccccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEEHHHccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccccccccHHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHccccEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEccccccccHHHcccEEEEEEEcccEEEEEEccEEEEEcccccccccccccccccccccccccccccccEEHHHccccEEEEEEEccccEEEEEEcc
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALwgngdygrlglgslesrwrpvvcSAFEKHSLKALACGGAHTLFLTETgcvyatglndfgqlgisenigysleplrisglkKEVVQISTGyhhssaitvdgelymwgknsngqlglgkkaakvipiptkveclSGIFTKQAALGFEQSvavtgggkvlswgaggsgrlghgqessilgflrstseyTPRLIKELEGVKVKIAAAGFLHsacidengrvyifgDRAVDKMLFqegnharrpslisklpyseevvcggyhtcvltsggelytwgsnengclgigsidvlhspervqgpfsespvdqictSIVLVSCGwkhtaaisegkiltwgwggshgtfsedghssggqlghgndvdyihptivNFGENVKALQVScgfnhtgalleyv
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
******TAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAISEGKILTWGWGGSHGTF**********LGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLE**
*LG*************DIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
*L*RSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MLGRSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAISEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEYV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query430 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.769 0.752 0.331 6e-42
Q5PQN1 1057 Probable E3 ubiquitin-pro yes no 0.767 0.312 0.304 1e-35
Q6PAV2 1057 Probable E3 ubiquitin-pro yes no 0.767 0.312 0.301 3e-35
Q5GLZ8 1057 Probable E3 ubiquitin-pro yes no 0.767 0.312 0.296 4e-34
Q15751 4861 Probable E3 ubiquitin-pro no no 0.651 0.057 0.355 3e-33
Q15034 1050 Probable E3 ubiquitin-pro no no 0.725 0.297 0.307 3e-30
Q9VR91 4912 Probable E3 ubiquitin-pro yes no 0.790 0.069 0.311 1e-27
F2Z461 1003 E3 ISG15--protein ligase no no 0.595 0.255 0.325 7e-27
Q80YD6464 Secretion-regulating guan no no 0.832 0.771 0.293 1e-26
Q92834 1020 X-linked retinitis pigmen no no 0.616 0.259 0.320 3e-26
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  172 bits (435), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 177/368 (48%), Gaps = 37/368 (10%)

Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 39  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 98

Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   N      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 99  RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 157

Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
              +  +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 158 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 209

Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +Y +G     ++   +      
Sbjct: 210 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 266

Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
           P  +  L  S   ++  G  HT  LTS G+LY WG N+ G +G+G+     SP +V+ P 
Sbjct: 267 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 326

Query: 339 SESPVDQICTSIVLVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDV 397
            +         +V VSCGW+HT A++E   +  WG G            + GQLG G  V
Sbjct: 327 DQ--------KVVQVSCGWRHTLAVTERNNVFAWGRG------------TNGQLGIGESV 366

Query: 398 DYIHPTIV 405
           D   P I+
Sbjct: 367 DRNFPKII 374
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description
>sp|Q80YD6|SRGEF_MOUSE Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2 Back     alignment and function description
>sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
225438323420 PREDICTED: E3 ubiquitin-protein ligase H 0.967 0.990 0.676 1e-171
356508920417 PREDICTED: probable E3 ubiquitin-protein 0.930 0.959 0.702 1e-165
224083557419 predicted protein [Populus trichocarpa] 0.951 0.976 0.710 1e-163
449453906481 PREDICTED: probable E3 ubiquitin-protein 0.913 0.817 0.680 1e-158
356518818404 PREDICTED: LOW QUALITY PROTEIN: probable 0.895 0.952 0.684 1e-157
30682540434 regulator of chromosome condensation rep 0.951 0.942 0.658 1e-151
297810989434 hypothetical protein ARALYDRAFT_487713 [ 0.946 0.937 0.659 1e-150
13548329435 putative protein [Arabidopsis thaliana] 0.930 0.919 0.626 1e-141
242071255418 hypothetical protein SORBIDRAFT_05g02090 0.895 0.921 0.604 1e-137
222616116425 hypothetical protein OsJ_34191 [Oryza sa 0.895 0.905 0.594 1e-137
>gi|225438323|ref|XP_002273073.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|296082630|emb|CBI21635.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 289/427 (67%), Positives = 351/427 (82%), Gaps = 11/427 (2%)

Query: 4   RSLTAMTKYYLKQDIKLGSKLGICKRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPV 63
           RS   +++  L+   KLG  LG C+R  SS  ++RFAALWGNGD+GRLGLGSLES+WRP 
Sbjct: 3   RSCMRVSQSALQS--KLG--LGFCRRLSSSEPRKRFAALWGNGDFGRLGLGSLESQWRPA 58

Query: 64  VCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKK 123
           VCSAF+ HSL A+ACGGAHTLFLTE+GCVYA GLNDFGQLG+S +  Y+ EPL +S L K
Sbjct: 59  VCSAFDHHSLVAIACGGAHTLFLTESGCVYAAGLNDFGQLGVSVDKNYTTEPLEVSALPK 118

Query: 124 EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAA 183
           +++ I+ GY+HS+AIT DGELYMWGKNSNGQLGLGKKAA  + +P+KVECL+GI  K  A
Sbjct: 119 KIIHIAAGYYHSAAITADGELYMWGKNSNGQLGLGKKAANAVSVPSKVECLNGISIKMVA 178

Query: 184 LGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIA 243
           LG E SVA T  G+ LSWGAGGSGRLGHG ESS+LGF R++SEY PRLI+ LEG+KVK  
Sbjct: 179 LGSEHSVAATDQGEALSWGAGGSGRLGHGHESSLLGFFRTSSEYRPRLIRRLEGIKVKNV 238

Query: 244 AAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVL 303
           AAG LHSACIDENG V+IFG+RA+DK  F+E  +A  PS+IS+LPYS++V CGGYHTCV+
Sbjct: 239 AAGLLHSACIDENGSVFIFGERAMDKFGFREAKNATAPSMISELPYSKQVACGGYHTCVI 298

Query: 304 TSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAI 363
           +S GEL+TWGSNENGCLG+G ++ +H PER++GPFS++PV Q       VSCGWKHTAAI
Sbjct: 299 SSSGELFTWGSNENGCLGMGFMETIHFPERIEGPFSKNPVSQ-------VSCGWKHTAAI 351

Query: 364 SEGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHT 423
           SEG + TWGWGGS+GTFS+DGHSSGGQLG G+DVD+I P +V F E+V+ALQVSCGFNHT
Sbjct: 352 SEGNVFTWGWGGSYGTFSDDGHSSGGQLGQGSDVDHIKPKMVEFEESVRALQVSCGFNHT 411

Query: 424 GALLEYV 430
           GA+LEY+
Sbjct: 412 GAILEYI 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356508920|ref|XP_003523201.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|224083557|ref|XP_002307065.1| predicted protein [Populus trichocarpa] gi|222856514|gb|EEE94061.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449453906|ref|XP_004144697.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356518818|ref|XP_003528074.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4-like [Glycine max] Back     alignment and taxonomy information
>gi|30682540|ref|NP_680156.2| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|26452773|dbj|BAC43467.1| unknown protein [Arabidopsis thaliana] gi|28973187|gb|AAO63918.1| putative UVB-resistance protein UVR8 [Arabidopsis thaliana] gi|332003957|gb|AED91340.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297810989|ref|XP_002873378.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata] gi|297319215|gb|EFH49637.1| hypothetical protein ARALYDRAFT_487713 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|13548329|emb|CAC35876.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242071255|ref|XP_002450904.1| hypothetical protein SORBIDRAFT_05g020900 [Sorghum bicolor] gi|241936747|gb|EES09892.1| hypothetical protein SORBIDRAFT_05g020900 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|222616116|gb|EEE52248.1| hypothetical protein OsJ_34191 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
TAIR|locus:504956339434 RUG1 "AT5G08710" [Arabidopsis 0.948 0.940 0.659 1.9e-154
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.723 0.706 0.349 3.1e-44
UNIPROTKB|Q15751 4861 HERC1 "Probable E3 ubiquitin-p 0.693 0.061 0.346 9e-36
UNIPROTKB|F1MNS0 4857 HERC1 "Uncharacterized protein 0.688 0.060 0.342 6.4e-35
UNIPROTKB|F1S098 4859 HERC1 "Uncharacterized protein 0.688 0.060 0.342 6.4e-35
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.679 0.060 0.342 1.2e-35
TAIR|locus:2205794386 AT1G27060 [Arabidopsis thalian 0.597 0.665 0.323 2.2e-37
UNIPROTKB|E2QYQ5 4863 HERC1 "Uncharacterized protein 0.688 0.060 0.342 6.4e-35
MGI|MGI:1914595 1057 Herc4 "hect domain and RLD 4" 0.653 0.265 0.340 6.8e-36
UNIPROTKB|Q5GLZ8 1057 HERC4 "Probable E3 ubiquitin-p 0.653 0.265 0.336 1.4e-35
TAIR|locus:504956339 RUG1 "AT5G08710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1506 (535.2 bits), Expect = 1.9e-154, P = 1.9e-154
 Identities = 275/417 (65%), Positives = 335/417 (80%)

Query:    14 LKQDIKLGSKLGIC-KRWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHS 72
             L +D KLG  +G+C  RW+SS   +RFAA+WG+GDYGRLGLG+L+S+W P VCSA   HS
Sbjct:    25 LLKDSKLGP-IGVCCSRWVSSESGKRFAAMWGSGDYGRLGLGNLDSQWTPAVCSALSDHS 83

Query:    73 LKALACGGAHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGY 132
             + A+ACGGAHTLFLTET  V+ATGLND GQLG+S+   ++++PL +SGL K+++ IS GY
Sbjct:    84 ITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDPLEVSGLDKDILHISAGY 143

Query:   133 HHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALGFEQSVAV 192
             +HS+AITVDGELYMWGKNS+GQLGLGKKAA+V+ +PTKVE L GI  +  ALG E SVAV
Sbjct:   144 YHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHSVAV 203

Query:   193 TGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGFLHSAC 252
             T GG+VLSWG GGSGRLGHG +SS+ G LRS SE+TPRLIKELEG+KV   AAG LHSAC
Sbjct:   204 TDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIKELEGIKVTNVAAGLLHSAC 263

Query:   253 IDENGRVYIFGDRAVDKMLFQEGNHARRPSLISKLPYSEEVVCGGYHTCVLTSGGELYTW 312
              DENG  ++FG+++++KM F    +A  PS+IS++PY+EEV CGGYHTCV+T GGELYTW
Sbjct:   264 TDENGSAFMFGEKSINKMGFGGVRNATTPSIISEVPYAEEVACGGYHTCVVTRGGELYTW 323

Query:   313 GSNENGCLGIGSIDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAISEGKILTWG 372
             GSNENGCLG  S  V HSP RV+GPF ES V Q       VSCGWKHTAAIS+  + TWG
Sbjct:   324 GSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQ-------VSCGWKHTAAISDNNVFTWG 376

Query:   373 WGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGFNHTGALLEY 429
             WGGSHGTFS DGHSSGGQLGHG+DVDY  P +V+ G+NV+A+ +SCGFNHT A+LE+
Sbjct:   377 WGGSHGTFSVDGHSSGGQLGHGSDVDYARPAMVDLGKNVRAVHISCGFNHTAAVLEH 433
GO:0003682 "chromatin binding" evidence=ISS
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2205794 AT1G27060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1914595 Herc4 "hect domain and RLD 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5GLZ8 HERC4 "Probable E3 ubiquitin-protein ligase HERC4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-28
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 8e-27
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-26
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-20
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 4e-08
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 7e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 7e-06
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  115 bits (290), Expect = 4e-28
 Identities = 79/275 (28%), Positives = 125/275 (45%), Gaps = 19/275 (6%)

Query: 60  WRP--VVCSAFEKHSLK--ALACGGAHTLFLTETGCVYATG---LNDFGQLGISENIGYS 112
             P  V   +  K  L+   LACG   ++ LT  G VY+ G     + GQ     +   S
Sbjct: 161 STPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTS 220

Query: 113 LEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLG--KKAAKVIPIPTK 170
           ++   +   KK +VQ++ G  H  A+T +G++Y WG N  GQLG    ++   V+ +   
Sbjct: 221 IQFTPLKVPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP 280

Query: 171 VECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPR 230
               +    K  A G + S+A+   G++ +WG    G+LG G +  I           P 
Sbjct: 281 FAIRN---IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEI-----GALTTKPN 332

Query: 231 LIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR--PSLISKLP 288
             + L GV +   +AG  HS  + ++G +Y FG     ++  QE        P+ +S   
Sbjct: 333 YKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAI 392

Query: 289 YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIG 323
             E+V CG +H    T  G +Y+WG  E+G LG G
Sbjct: 393 KLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNG 427

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 430
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.96
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.94
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.93
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.83
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.34
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.24
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.05
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.04
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.85
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.8
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.03
KOG0646 476 consensus WD40 repeat protein [General function pr 93.89
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 93.86
KOG3669 705 consensus Uncharacterized conserved protein, conta 92.58
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 92.28
KOG3669 705 consensus Uncharacterized conserved protein, conta 91.92
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 91.57
KOG0315311 consensus G-protein beta subunit-like protein (con 91.36
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 91.34
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 89.89
KOG0315311 consensus G-protein beta subunit-like protein (con 89.44
KOG0646476 consensus WD40 repeat protein [General function pr 89.3
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 87.85
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 85.31
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 83.82
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 83.18
KOG1408 1080 consensus WD40 repeat protein [Function unknown] 83.0
KOG1900 1311 consensus Nuclear pore complex, Nup155 component ( 81.76
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 81.34
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-51  Score=380.26  Aligned_cols=359  Identities=28%  Similarity=0.484  Sum_probs=290.7

Q ss_pred             cCCcEEEEEEcCCCCccCCCCCCCc-ccceeeCcc--CCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCC----
Q 014122           35 LQRRFAALWGNGDYGRLGLGSLESR-WRPVVCSAF--EKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISE----  107 (430)
Q Consensus        35 ~~~~~v~~wG~n~~G~LG~~~~~~~-~~p~~v~~~--~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~----  107 (430)
                      .+...||+||.|...+||.+..+.. ..|+..++.  +...|++++||+.|+++|++||+||+||.|..|+||...    
T Consensus        65 ~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~  144 (476)
T COG5184          65 VKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDI  144 (476)
T ss_pred             hheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCccccccccccccc
Confidence            3678999999999999999986665 899999988  667899999999999999999999999999999999875    


Q ss_pred             -----------CCCccccceEeccC-----CCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCc----cccc
Q 014122          108 -----------NIGYSLEPLRISGL-----KKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAK----VIPI  167 (430)
Q Consensus       108 -----------~~~~~~~p~~i~~l-----~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~----~~~~  167 (430)
                                 ......+|.+++..     +.++++++||++++++|+++|+||+||....+.++.+....+    ...+
T Consensus       145 ~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~  224 (476)
T COG5184         145 CDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFT  224 (476)
T ss_pred             ccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeee
Confidence                       33446778888751     338999999999999999999999999999999888855443    2355


Q ss_pred             ceEEeccCCceEEEEecCCceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC
Q 014122          168 PTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF  247 (430)
Q Consensus       168 p~~i~~~~~~~i~~i~~g~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~  247 (430)
                      |.++.   ...|+++++|.+|.++|+++|+||.||.+..||||+...+...     .....|+.+..   ..|..|+||.
T Consensus       225 p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~-----~~~lv~~~f~i---~~i~~vacG~  293 (476)
T COG5184         225 PLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLK-----LVVLVGDPFAI---RNIKYVACGK  293 (476)
T ss_pred             eeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcc-----cccccCChhhh---hhhhhcccCc
Confidence            55554   4579999999999999999999999999999999998764321     11122222221   2488999999


Q ss_pred             CeEEEEecCCcEEEEecCCCCccccCCC----CCCCCCeeecCCC--CeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCC
Q 014122          248 LHSACIDENGRVYIFGDRAVDKMLFQEG----NHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLG  321 (430)
Q Consensus       248 ~~~~~lt~~g~vy~wG~~~~gqlg~~~~----~~~~~p~~i~~~~--~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG  321 (430)
                      +|+++|+++|++|+||.|.++|++.++.    .....|.......  .|..+++|..|+++|..+|.||.||.++.+|||
T Consensus       294 ~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg  373 (476)
T COG5184         294 DHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLG  373 (476)
T ss_pred             ceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCcccccc
Confidence            9999999999999999999999998822    1123333333333  389999999999999999999999999999999


Q ss_pred             CCC--CCCcCCCeeccCCCCCCCcccccceEEEEeecCceeEEEE-CCceEEEecCCCCCccccCCCCCCCccCCcCC-C
Q 014122          322 IGS--IDVLHSPERVQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGND-V  397 (430)
Q Consensus       322 ~~~--~~~~~~p~~v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~-~  397 (430)
                      ...  +.....|.++..          ..++..++||..|.++.+ +|+||.||+            |++||||.++. .
T Consensus       374 ~~~~~~~~~~~~~~ls~----------~~~~~~v~~gt~~~~~~t~~gsvy~wG~------------ge~gnlG~g~~~~  431 (476)
T COG5184         374 IQEEITIDVSTPTKLSV----------AIKLEQVACGTHHNIARTDDGSVYSWGW------------GEHGNLGNGPKEA  431 (476)
T ss_pred             CcccceeecCCcccccc----------ccceEEEEecCccceeeccCCceEEecC------------chhhhccCCchhh
Confidence            987  555555555542          134666999999999999 999999999            69999999986 4


Q ss_pred             CccccEEEEe--cCCeeEEEEeccCCceEEE
Q 014122          398 DYIHPTIVNF--GENVKALQVSCGFNHTGAL  426 (430)
Q Consensus       398 ~~~~p~~v~~--~~~~~v~~i~~G~~~t~~l  426 (430)
                      ....|+.++.  +....++..-||+.+.++.
T Consensus       432 ~~~~pt~i~~~~~~~~~~i~~g~~~~~~v~~  462 (476)
T COG5184         432 DVLVPTLIRQPLLSGHNIILAGYGNQFSVIE  462 (476)
T ss_pred             hccccccccccccCCCceEEeccCcceEEEe
Confidence            6778888873  5677787777777766654

>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 5e-43
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 6e-43
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 4e-29
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 6e-43
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 3e-42
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 2e-26
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 4e-15
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-21
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 4e-06
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 1e-21
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 4e-06
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 2e-20
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 1e-05
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 6e-15
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 4e-13
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure 
Iteration: 1

 Score =  171 bits (434), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 122/368 (33%), Positives = 177/368 (48%), Gaps = 37/368 (10%)
Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 40  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99
Query: 102 QLGISENIGYSLEPLRISGLKK-EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   N      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 100 RLG-HGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158
Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
              +  +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 159 EDSL--VPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDR------ 210
Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +Y +G     ++   +      
Sbjct: 211 ---TDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 267
Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
           P  +  L  S   ++  G  HT  LTS G+LY WG N+ G +G+G+     SP +V+ P 
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 327
Query: 339 SESPVDQICTSIVLVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDV 397
            +         +V VSCGW+HT A++E   +  WG G            + GQLG G  V
Sbjct: 328 DQ--------KVVQVSCGWRHTLAVTERNNVFAWGRG------------TNGQLGIGESV 367
Query: 398 DYIHPTIV 405
           D   P I+
Sbjct: 368 DRNFPKII 375
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-102
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-89
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-69
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-25
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 4e-97
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-81
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-65
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-32
3mvd_K423 Regulator of chromosome condensation; protein-DNA 8e-92
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-79
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-39
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-89
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-70
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 7e-58
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-86
3of7_A473 Regulator of chromosome condensation; beta-propell 6e-71
3of7_A473 Regulator of chromosome condensation; beta-propell 5e-65
3of7_A 473 Regulator of chromosome condensation; beta-propell 6e-51
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-45
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-36
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-32
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-23
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  309 bits (793), Expect = e-102
 Identities = 122/391 (31%), Positives = 184/391 (47%), Gaps = 41/391 (10%)

Query: 43  WGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGC-VYATGLNDFG 101
           WG G+ G+LG G  E R  P   SA + H + ++ CG  HT+  +++G  VY+ G  DFG
Sbjct: 40  WGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFG 99

Query: 102 QLGISENIGYSLEPLRISGLK-KEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKK 160
           +LG   +      PL I  L    + QI+ G  H  A+T++GE+  WG+N NGQLGLG  
Sbjct: 100 RLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDT 158

Query: 161 AAKVIPIPTKVECLSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF 220
                 +P K++   GI  K  A G E + AVT  G +  WG G  G LG G        
Sbjct: 159 EDS--LVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD------- 209

Query: 221 LRSTSEYTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIFGDRAVDKMLFQEGNHARR 280
              T    P  +    G K+ + A G+ H+  +  +G +Y +G     ++   +      
Sbjct: 210 --RTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI 267

Query: 281 PSLISKLPYS--EEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPF 338
           P  +  L  S   ++  G  HT  LTS G+LY WG N+ G +G+G+     SP +V+ P 
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPD 327

Query: 339 SESPVDQICTSIVLVSCGWKHTAAISE-GKILTWGWGGSHGTFSEDGHSSGGQLGHGNDV 397
            +         +V VSCGW+HT A++E   +  WG G +            GQLG G  V
Sbjct: 328 DQ--------KVVQVSCGWRHTLAVTERNNVFAWGRGTN------------GQLGIGESV 367

Query: 398 DYIHPTIVNFGENVKALQVSCGFNHTGALLE 428
           D   P I+       ++  + G +   + ++
Sbjct: 368 DRNFPKII----EALSVDGASGQHIESSNID 394
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 97.87
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.54
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 97.4
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.99
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 96.79
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 96.26
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.07
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 95.92
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 95.4
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 95.14
1yfq_A342 Cell cycle arrest protein BUB3; WD repeat WD40 rep 94.87
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 94.72
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 94.66
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 94.46
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 94.41
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 94.18
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 94.14
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 93.69
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 93.11
3jrp_A379 Fusion protein of protein transport protein SEC13 93.03
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 92.92
4g56_B357 MGC81050 protein; protein arginine methyltransfera 92.83
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 92.58
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 92.5
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 92.23
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 91.59
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 91.32
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 91.25
3jro_A 753 Fusion protein of protein transport protein SEC13 91.19
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 90.71
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 90.61
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 90.47
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 90.47
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 90.4
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 89.68
3jrp_A379 Fusion protein of protein transport protein SEC13 89.3
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 89.17
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 88.62
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 88.49
1vyh_C410 Platelet-activating factor acetylhydrolase IB alph 88.32
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 88.24
4g56_B357 MGC81050 protein; protein arginine methyltransfera 87.99
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 86.58
3jro_A 753 Fusion protein of protein transport protein SEC13 85.13
1xip_A388 Nucleoporin NUP159; beta-propeller, transport prot 84.78
2xyi_A430 Probable histone-binding protein CAF1; transcripti 84.75
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 84.37
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 84.05
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 83.78
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 83.14
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 82.92
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 82.48
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 81.66
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 81.38
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 80.86
3ow8_A321 WD repeat-containing protein 61; structural genomi 80.2
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 80.11
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 80.08
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.6e-73  Score=553.00  Aligned_cols=369  Identities=29%  Similarity=0.498  Sum_probs=328.1

Q ss_pred             eEEEeccCCcEEEEEEcCCCCccCCCCCCCcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccCCC
Q 014122           29 RWISSTLQRRFAALWGNGDYGRLGLGSLESRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGISEN  108 (430)
Q Consensus        29 ~~~~~~~~~~~v~~wG~n~~G~LG~~~~~~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~~~  108 (430)
                      ..+...+++++||+||.|.+||||.+..++...|.++..+.+.+|++|+||..|+++|+++|+||+||.|.+||||.+. 
T Consensus        11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~-   89 (389)
T 3kci_A           11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG-   89 (389)
T ss_dssp             ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSS-
T ss_pred             ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCC-
Confidence            3444455899999999999999999988888999999998888999999999999999999999999999999999984 


Q ss_pred             CCccccceEeccCCC---cEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC
Q 014122          109 IGYSLEPLRISGLKK---EVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG  185 (430)
Q Consensus       109 ~~~~~~p~~i~~l~~---~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g  185 (430)
                      ......|.+++.+..   ++++|+||..|+++|+++|+||+||.|.+||||.+....  ...|.+++.+.+.+|++|+||
T Consensus        90 ~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~l~~~~i~~va~G  167 (389)
T 3kci_A           90 TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSP--CDRPRVIESLRGIEVVDVAAG  167 (389)
T ss_dssp             SCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGGTTSCEEEEEEC
T ss_pred             cCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCcc--CcCCeEecccCCCeEEEEEeC
Confidence            455678888876654   568899999999999999999999999999999988765  678888988888899999999


Q ss_pred             CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccccccccccCcceeecccCccEEEEEeCC--CeEEEEecCCcEEEEe
Q 014122          186 FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGFLRSTSEYTPRLIKELEGVKVKIAAAGF--LHSACIDENGRVYIFG  263 (430)
Q Consensus       186 ~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~p~~i~~~~~~~i~~i~~g~--~~~~~lt~~g~vy~wG  263 (430)
                      ..|+++|+++|+||+||.|.++|||.+..         .....|..+..+.+.+|++|+||.  .|+++|+++|+||+||
T Consensus       168 ~~hs~alt~~G~v~~wG~n~~GqLG~~~~---------~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG  238 (389)
T 3kci_A          168 GAHSACVTAAGDLYTWGKGRYGRLGHSDS---------EDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWG  238 (389)
T ss_dssp             SSEEEEEETTSCEEEEECCGGGTTCSSSC---------CCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEE
T ss_pred             cCeEEEEeCCCeEEEeCCCCCCCcCCCCC---------cccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEe
Confidence            99999999999999999999999999876         455678888888888999999995  8999999999999999


Q ss_pred             cCCCCccccCCCCCCCCCeeecCCC--CeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcCCCeeccCCCCCC
Q 014122          264 DRAVDKMLFQEGNHARRPSLISKLP--YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSIDVLHSPERVQGPFSES  341 (430)
Q Consensus       264 ~~~~gqlg~~~~~~~~~p~~i~~~~--~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~~~~~~p~~v~~~~~~~  341 (430)
                      .|.++|||.+.......|.++..+.  +|++|+||.+|+++|+++|+||+||.|.+||||.++......|.++.. +...
T Consensus       239 ~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~-l~~~  317 (389)
T 3kci_A          239 DGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQG-LQGK  317 (389)
T ss_dssp             CCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGG-GTTC
T ss_pred             CCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEecc-CCCC
Confidence            9999999999888888899998776  499999999999999999999999999999999999888888988874 2222


Q ss_pred             CcccccceEEEEeecCceeEEEE-CCceEEEecCCCCCccccCCCCCCCccCCcCCCCccccEEEEecCCeeEEEEeccC
Q 014122          342 PVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNFGENVKALQVSCGF  420 (430)
Q Consensus       342 ~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~~~~~~v~~i~~G~  420 (430)
                             +|++|+||.+|++|++ +|+||+||+            |++||||+++......|++|+.+.+.+|++|+||.
T Consensus       318 -------~v~~ia~G~~h~~al~~~G~v~~wG~------------n~~GqLG~g~~~~~~~P~~v~~~~~~~v~~va~G~  378 (389)
T 3kci_A          318 -------KVIAIATGSLHCVCCTEDGEVYTWGD------------NDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGS  378 (389)
T ss_dssp             -------CEEEEEECSSEEEEEETTCCEEEEEC------------CTTSTTCSSSCCCEEEEEECGGGTTSCCCEEEEET
T ss_pred             -------CEEEEEeccCeEEEECCCCCEEEeeC------------CCCCcCCCCCCCCccCcEEecccCCCCEEEEEecC
Confidence                   4666999999999999 999999999            79999999999999999999999999999999999


Q ss_pred             CceEEEEee
Q 014122          421 NHTGALLEY  429 (430)
Q Consensus       421 ~~t~~l~~~  429 (430)
                      +||++|.++
T Consensus       379 ~ht~al~~~  387 (389)
T 3kci_A          379 AHTLAWSTS  387 (389)
T ss_dssp             TEEEEECC-
T ss_pred             CcEEEEecC
Confidence            999999875
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* Back     alignment and structure
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 430
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 6e-38
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-23
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-14
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-13
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-12
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 2e-09
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-09
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.002
d1jtdb_ 273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.003
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 6e-38
 Identities = 93/414 (22%), Positives = 140/414 (33%), Gaps = 89/414 (21%)

Query: 81  AHTLFLTETGCVYATGLNDFGQLGISENIGYSLEPLRISGLKKEVVQISTGYHHSSAITV 140
           +H    TE G V   G  D GQLG+ EN+    +P  +S  +  VVQ   G  H+  ++ 
Sbjct: 6   SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED-VVQAEAGGMHTVCLSK 64

Query: 141 DGELYMWGKNSNGQLGLGKKAAKVIPIPTKVEC--------------------------- 173
            G++Y +G N  G LG          +P KVE                            
Sbjct: 65  SGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWG 124

Query: 174 ------------------------LSGIFTKQAALGFEQSVAVTGGGKVLSWGAGGSGRL 209
                                      +   + A G +  V +T  G + + G G  G+L
Sbjct: 125 SFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQL 184

Query: 210 GHGQESSILGFLRSTSE-------YTPRLIKELEGVKVKIAAAGFLHSACIDENGRVYIF 262
           G   E       R   E          +       V+ + A  G   +  I   G VY F
Sbjct: 185 GRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGF 244

Query: 263 GDRAVDKMLFQEGNHARRPSLISKLPYSEEVV----CGGYHTCVLTSGGELYTWGSNENG 318
           G     ++          P  ++    S +       G +HT  + S G+ Y+ G  E G
Sbjct: 245 GLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYG 304

Query: 319 CLGIGSIDVLHS-PERVQGPFSESPVDQICTSIVLVSCGWKHTAAISE-GKILTWGWGGS 376
            LG+G      S P  +              ++  V+CG     A+++ G++  WG G +
Sbjct: 305 RLGLGEGAEEKSIPTLISRL----------PAVSSVACGASVGYAVTKDGRVFAWGMGTN 354

Query: 377 HGTFSEDGHSSGGQLGHGNDVDYIHPTIV--NFGENVKALQVSCGFNHTGALLE 428
                        QLG G D D   P  +     EN   L VS G  HT  L++
Sbjct: 355 ------------YQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK 396
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 97.61
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.45
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.93
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 95.52
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 95.4
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 95.25
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 94.41
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 92.63
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 92.3
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 90.46
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 89.15
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 88.83
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 87.19
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 86.39
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 85.68
d1tbga_340 beta1-subunit of the signal-transducing G protein 82.0
d1suua_304 DNA gyrase A C-terminal domain {Lyme disease spiro 81.93
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 80.11
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-60  Score=465.19  Aligned_cols=374  Identities=27%  Similarity=0.392  Sum_probs=303.6

Q ss_pred             eeEEEeccCCcEEEEEEcCCCCccCCCCCC-CcccceeeCccCCCceEEEEeCCcceEEEECCCCEEEEecCCCCccccC
Q 014122           28 KRWISSTLQRRFAALWGNGDYGRLGLGSLE-SRWRPVVCSAFEKHSLKALACGGAHTLFLTETGCVYATGLNDFGQLGIS  106 (430)
Q Consensus        28 ~~~~~~~~~~~~v~~wG~n~~G~LG~~~~~-~~~~p~~v~~~~~~~I~~i~~G~~~~~~lt~~G~vy~wG~n~~g~lg~~  106 (430)
                      |+.+++  .+|+||+||.|.+||||.+... ++..|.+++.+.+  |++|+||..|++||+++|+||+||.|.+||||.+
T Consensus         7 h~~~~~--~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~--i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g   82 (401)
T d1a12a_           7 HRSHST--EPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPED--VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRD   82 (401)
T ss_dssp             CTTCCC--CCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSSC--EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSC
T ss_pred             EEEEEC--CCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCCC--eEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcc
Confidence            455555  8999999999999999998654 5889999988764  9999999999999999999999999999999998


Q ss_pred             CCCCc-cccceEeccCCCcEEEEEcCCCeEEEEEcCCcEEEEecCCCCCCCCCCCCCcccccceEEeccCCceEEEEecC
Q 014122          107 ENIGY-SLEPLRISGLKKEVVQISTGYHHSSAITVDGELYMWGKNSNGQLGLGKKAAKVIPIPTKVECLSGIFTKQAALG  185 (430)
Q Consensus       107 ~~~~~-~~~p~~i~~l~~~i~~i~~G~~~~~~lt~~G~vy~~G~n~~gqlg~~~~~~~~~~~p~~i~~~~~~~i~~i~~g  185 (430)
                      ..... .+.|..+. +..+|++|+||..|+++++++|+||+||.+..++.+....... ...+..+....+.+|++|+||
T Consensus        83 ~~~~~~~~~~~~~~-~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~g  160 (401)
T d1a12a_          83 TSVEGSEMVPGKVE-LQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPM-KKSMVPVQVQLDVPVVKVASG  160 (401)
T ss_dssp             CCSTTGGGSCEECC-CCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBT-BCEEEEEEECCSSCEEEEEEC
T ss_pred             cccccccccccccc-cccceeeecccccceeeccccccceeccccccccccccccCCc-cccceeeeeccCCceeEEEec
Confidence            54433 34555555 5569999999999999999999999999887766554433321 223333444456689999999


Q ss_pred             CceeEEEEcCCcEEEeecCCCCCCCCCCCCccccc--cccccccCcceee-----cccCccEEEEEeCCCeEEEEecCCc
Q 014122          186 FEQSVAVTGGGKVLSWGAGGSGRLGHGQESSILGF--LRSTSEYTPRLIK-----ELEGVKVKIAAAGFLHSACIDENGR  258 (430)
Q Consensus       186 ~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~--~~~~~~~~p~~i~-----~~~~~~i~~i~~g~~~~~~lt~~g~  258 (430)
                      ..|+++++++|++|+||.|.++|+|..........  ........|..+.     .....+|.+|+||.+|+++|+++|+
T Consensus       161 ~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~  240 (401)
T d1a12a_         161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH  240 (401)
T ss_dssp             SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred             ccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCe
Confidence            99999999999999999999999998754322111  1111122333332     2233579999999999999999999


Q ss_pred             EEEEecCCCCccccCCCCCCCCCeeecCCC----CeeeEEeeCCeEEEEEcCCCEEEEeCCCCCCCCCCCC-CCcCCCee
Q 014122          259 VYIFGDRAVDKMLFQEGNHARRPSLISKLP----YSEEVVCGGYHTCVLTSGGELYTWGSNENGCLGIGSI-DVLHSPER  333 (430)
Q Consensus       259 vy~wG~~~~gqlg~~~~~~~~~p~~i~~~~----~i~~v~~G~~~~~~l~~~g~v~~wG~n~~gqLG~~~~-~~~~~p~~  333 (430)
                      ||.||.+.+++++.........+..+....    .++.+++|..|+++++++|+||+||.|.+||||.++. .....|..
T Consensus       241 v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~  320 (401)
T d1a12a_         241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTL  320 (401)
T ss_dssp             EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEE
T ss_pred             EeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEE
Confidence            999999999999988777665555555433    5899999999999999999999999999999999864 44556777


Q ss_pred             ccCCCCCCCcccccceEEEEeecCceeEEEE-CCceEEEecCCCCCccccCCCCCCCccCCcCCCCccccEEEEe--cCC
Q 014122          334 VQGPFSESPVDQICTSIVLVSCGWKHTAAIS-EGKILTWGWGGSHGTFSEDGHSSGGQLGHGNDVDYIHPTIVNF--GEN  410 (430)
Q Consensus       334 v~~~~~~~~i~~~~~~v~~i~~G~~h~~~l~-~g~v~~wG~~~~~~~~~~~~~N~~gqlG~~~~~~~~~p~~v~~--~~~  410 (430)
                      +...          .+|++|+||.+|++|++ +|+||+||+            |.+||||+|+..+..+|++|..  +++
T Consensus       321 i~~~----------~~i~~Is~G~~hs~alt~dG~v~~WG~------------n~~GQLG~G~~~~~~~P~~v~~~~~~~  378 (401)
T d1a12a_         321 ISRL----------PAVSSVACGASVGYAVTKDGRVFAWGM------------GTNYQLGTGQDEDAWSPVEMMGKQLEN  378 (401)
T ss_dssp             CCSS----------SSEEEEEECSSEEEEEETTSCEEEEEC------------CTTSTTCSSSCSCEEEEEECCSTTTTT
T ss_pred             cCCC----------CCeEEEEeeCCEEEEEeCCCeEEEEec------------CCCCCCCCCCCCCEecCEEeeccCCCC
Confidence            6531          24777999999999999 999999999            7999999999999999999875  567


Q ss_pred             eeEEEEeccCCceEEEEee
Q 014122          411 VKALQVSCGFNHTGALLEY  429 (430)
Q Consensus       411 ~~v~~i~~G~~~t~~l~~~  429 (430)
                      .+|.+|+||.+||++|+++
T Consensus       379 ~~v~~v~~G~~hs~~l~~d  397 (401)
T d1a12a_         379 RVVLSVSSGGQHTVLLVKD  397 (401)
T ss_dssp             EEEEEEEECSSEEEEEEEE
T ss_pred             CEEEEEEEccceEEEEEEC
Confidence            8999999999999999986
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure