Citrus Sinensis ID: 014141

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
Protein Sequence
MTKKARHISEDAPEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccEEEccccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEccccccccHHHHHHHHHHccccEEEEEEccccccccccccccccccccccccccccccccEEEEEEEEEccHHHHHHHHccccccEEEEEEcccccEEEEEEccccEEEEEEEEEcccEEEEEEcccEEEEEEEcccEEEEEccccccEEEEEEEcccccccEEcccccccccccEEEEEEcccEEEEEccccccccEEEEEEEEEccccccHHHHHHHHcccccccEEEEEEEccccccccccccccccccccEEEEEEEEEEccHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHccccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHcccccccHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEccccccccccccHHHEEcccccccccccHcHEEEEEEEEEEccHHHHHHHHcccHHHEEEEEEcccccEEEEEEEcccEEEEEEEccccccEEEEEccccEEEEEEccccccEEEcccccEEEEEEccccccHHHHHHHHHHHccccEEEEEccccEEEccccccccccEEEEEEEEEcccHHHHHHHHHHHHccccccEEEEEEcccccccccccccccHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcEEEEEccccccHHHHHHHHHHccccccccEEEEcccccc
Coil and Loop (DISEMBL)
mtkkarhisedapekkenLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTsldfdkkvkymsfppdyqqskyISWVNKVLELHrgsrinqfRICFRLdakhkcniTNWVNTAIAKNVrnfeldlspgtydnyyeIPQECYKNlqsgcglsgikslrSLTLCAVNVTGEVVEFFIhncpllenlritqspdllslkvvgssiplkcldiqfcYSIKEIEisapnllsfkyigqdinlhvgslpqlVDVVFHVTPMVQKMHCIGSIVsylpqlktleldGCNEVFAQFsqrefpklmnlnisFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGrrigkkrhqisKHSHQHLKLVElqgfngreiDFELAFYVFENATMLEKMiikpsgsrkrttlknSTNMlkaklprgvkltvgscdf
Flexible Loop (DISEMBL)
mtkkarhisedapekkenledWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFttsldfdkkVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRhqiskhshqhLKLVELQGFNGREIDFELAFYVFENATMLEkmiikpsgsrkrttlknstnmlkaklprgvkltvgscdf
Low Complexity Region (SEG)
MTKKARHISEDAPEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Disordered region (IsUnstruct)
*******************EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII***********************************
Disordered Region (DISOPRED)
************************RFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTT************PRGVKLTVGSCDF
Disordered Region (DISEMBL)
****************ENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRI************QHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Disordered Region (DISPRO)
*******************EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKKARHISEDAPEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPRGVKLTVGSCDF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	430	2.2.26 [Sep-21-2011]
Q0WR05	457	F-box/LRR-repeat protein	no	no	0.725	0.682	0.276	9e-18
Q84W80	481	F-box/LRR-repeat protein	no	no	0.418	0.374	0.3	2e-17
Q9FGQ3	444	F-box/FBD/LRR-repeat prot	no	no	0.806	0.781	0.251	1e-15
Q9FWZ1	451	F-box/LRR-repeat protein	no	no	0.804	0.767	0.225	3e-15
Q9M190	532	Putative F-box/LRR-repeat	no	no	0.802	0.648	0.242	4e-15
Q9SV82	409	FBD-associated F-box prot	no	no	0.851	0.894	0.267	4e-15
Q9C8Y6	442	FBD-associated F-box prot	no	no	0.806	0.785	0.234	4e-15
Q9ZV93	458	F-box/FBD/LRR-repeat prot	no	no	0.862	0.810	0.237	1e-14
Q9ZV94	452	Putative F-box/FBD/LRR-re	no	no	0.862	0.820	0.232	4e-14
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.460	0.434	0.282	7e-14

>sp|Q0WR05|FBL39_ARATH F-box/LRR-repeat protein At2g42730 OS=Arabidopsis thaliana GN=At2g42730 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 166/358 (46%), Gaps = 46/358 (12%)

Query: 18  NLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPD 77
           N +D  SR PD++L  I+S ++ KEA  TSVLS RWK ++   ++LD D +    S P  
Sbjct: 2   NAKDVISRLPDEVLGRILSLISTKEAVSTSVLSKRWKNMFVLVSNLDIDDR---QSVPKT 58

Query: 78  YQ-----QSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN---ITNWVNTAIAKNVR 129
            Q        Y+++V+K+L+  RGS I +  +   +  +   +   I +W+   +   V 
Sbjct: 59  KQNRIEIHRNYMAFVDKLLDTQRGSSIKKLTLKSHVGVRGGTDSSRIQSWICNVLDHGV- 117

Query: 130 NFELDLSPGTYDNYYEIPQECYKN-----LQSGCGLS-------GIKSLRSLTLCAVNVT 177
             +LD+          +P   +K+     L+ G G +        +  LR+L L +VN  
Sbjct: 118 -MDLDVFITLKGKSPPVPAMIFKSKTLVKLRVGRGFTIKLSQDVSLPLLRTLCLDSVNFV 176

Query: 178 G--EVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNL 235
           G   VV   I  CP+LE L + +    +      SS  LK L I+F      I + APNL
Sbjct: 177 GGHNVVGTLISRCPVLEEL-VVEERRCVDWTCSVSSPSLKRLHIRFDRKFTSISLDAPNL 235

Query: 236 LSFKY----IGQDINLHVGSLPQL-VDVVFHVTPMVQ-KMHCIGSI-------VSYLPQL 282
           + +K+    +G+  N+ + SL +  +++    T MV  +   +GSI       ++ +  +
Sbjct: 236 IYYKHSGYVLGKYPNVKLDSLIEARLNLRMDETRMVGVRNGSLGSIPADMRNLINGIRNV 295

Query: 283 KTLELDGCNEVFAQFSQREFP---KLMNLNISFTAANQETLLGLSFIMKACPFLEKLV 337
           + L L         FS +E P    L++L+I    A    +L L  ++K  P LE L+
Sbjct: 296 RILHLSSHTLELLYFSCKEMPLFDSLVSLSIGNDKARGWQMLPL--LIKNSPNLETLI 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 90.9 bits (224), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 109/230 (47%), Gaps = 50/230 (21%)

Query: 12  APEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKY 71
           +P   +   D  SR PDDIL  I+S L  + A +TSVLS RW+++W+ T SL F +    
Sbjct: 28  SPSYLKEAGDLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFHRDR-- 85

Query: 72  MSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAK------HKCNITNWVNTAIA 125
               PD         +N++L+ +R  ++  FRIC    A          +I +W+N A++
Sbjct: 86  ----PD------APCINRILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMS 135

Query: 126 KNVRNFELDLSPGTYDNYYEIPQECYKN-------LQSGCGLSGIK----------SLRS 168
           +NV N  L L    YD    IP+  Y N       L  GC    I           SL++
Sbjct: 136 RNVENLSLYLDEDKYD----IPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKN 191

Query: 169 LTLCAVNVTGEVVEFFIHNCPLLEN-----------LRITQSPDLLSLKV 207
           L+L   N++ E +   +  CP+LE+           L +++SP L++L++
Sbjct: 192 LSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEI 241

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGQ3|FDL37_ARATH F-box/FBD/LRR-repeat protein At5g53840 OS=Arabidopsis thaliana GN=At5g53840 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 106/421 (25%), Positives = 181/421 (42%), Gaps = 74/421 (17%)

Query: 20  EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQ 79
           E+  S+ PD ++  I+S L+ K+A RTS+LS+RW+ LW     LDFD + +  SF     
Sbjct: 17  EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSR-ELRSF----- 70

Query: 80  QSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGT 139
            S+++S+      LH+ S I + R+C   D      +T+W++      +++  +D+S  T
Sbjct: 71  -SEFVSFAGSFFYLHKDSYIQKLRVCI-YDLAGNYYLTSWIDLVTRHRIQH--IDISVFT 126

Query: 140 YDNYYEIPQECY-----------KNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNC 188
              +  IP   Y           +          +  L+ L L  VN T E     I +C
Sbjct: 127 CSGFGVIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDKIISC 186

Query: 189 -PLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYS-----------IKEIEISAPNLL 236
            P+LE L I +S +     +   S  LK ++I   +            ++ + I A ++ 
Sbjct: 187 SPVLEELTIVKSSEDNVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHSIK 246

Query: 237 SFKYIGQDINLHVGSLPQLVD---------------VVFHVTPMVQKMHCIGSIVSYLPQ 281
           S ++I       V     L+D                +  V  +V +   I  I  Y+ +
Sbjct: 247 SIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGTIKDIFHYM-E 305

Query: 282 LKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW 341
           L+ L+              +F  L  L+   + +N E LL L   +K+CP LE L L++ 
Sbjct: 306 LEPLQ--------------QFCYLSELSAVCSISNLEMLLNL---LKSCPKLESLSLKLV 348

Query: 342 NNGRRIGKKRHQISKHSH-----QHLKLVELQG-FNGREIDFELAFYVFENATMLEKMII 395
           +  +   KK   +S           LK V+L+    G   + ++A Y  EN+T+LEK+ +
Sbjct: 349 DYEK--NKKEEVMSSTVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTL 406

Query: 396 K 396
           K
Sbjct: 407 K 407

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWZ1|FBL13_ARATH F-box/LRR-repeat protein 13 OS=Arabidopsis thaliana GN=FBL13 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 101/447 (22%), Positives = 198/447 (44%), Gaps = 101/447 (22%)

Query: 21  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 80
           DW S+ PD +L  ++  L  K+  +TSVLS RW+ LW     LD D          D+Q+
Sbjct: 18  DWISKLPDCLLCEVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLDNT--------DFQE 69

Query: 81  -SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN---ITNWVNTAIAKNVRNFE-LDL 135
            + ++S+V+  L+ +  S + +F + +  D ++  +   I  W+NT + + V++ + LD 
Sbjct: 70  FNTFLSFVDSFLDFNSESFLQKFILKYDCDDEYDPDIFLIGRWINTIVTRKVQHIDVLDD 129

Query: 136 SPGTYDNYYEIPQECY--KNLQS--GCGLS-------GIKSLRSLTLCAVNVTGEV-VEF 183
           S G+++   ++P   Y  ++L S   CGL+        + SL+ + L       ++ +E 
Sbjct: 130 SYGSWE--VQLPSSIYTCESLVSLKLCGLTLASPEFVSLPSLKVMDLIITKFADDMGLET 187

Query: 184 FIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG- 242
            I  CP+LE+L I +S                     FC  I+ + + + +LL F ++  
Sbjct: 188 LITKCPVLESLTIERS---------------------FCDEIEVLRVRSQSLLRFTHVAD 226

Query: 243 ------QDINLHVGSLPQL-------------------------VDVVFHVTPM------ 265
                 +D+ + + + P+L                         +D+VF+++ +      
Sbjct: 227 SDEGVVEDLVVSIDA-PKLEYLRLSDHRVASFILNKPGKLVKADIDIVFNLSSVNKFNPD 285

Query: 266 -VQKMHCIGSIVSYLPQLKTLEL-DGCNEVFAQFSQRE-FPKLMNLNISFTAANQETLLG 322
            + K   I + +  +  +K + +     EV   FS+ E  P   NL++            
Sbjct: 286 DLPKRTMIRNFLLGISTIKDMIIFSSTLEVIYDFSRCERLPLFRNLSVLCVEFYGYMWEM 345

Query: 323 LSFIMKACPFLEKLVLQ---IWNNGRRI---GKKRHQISKHSHQHLKLVELQGFNGREID 376
           L   +++CP L+ LV++       G  I   G +R      S +++K+   +   G  ++
Sbjct: 346 LPIFLESCPNLKTLVVKSASYQEKGENIILPGPRRFL---SSLEYVKIE--RPLKGEAME 400

Query: 377 FELAFYVFENATMLEKMIIKPSGSRKR 403
            +L  Y+ EN+T+L+K+ +    S K+
Sbjct: 401 MKLVSYLLENSTILKKLTLCLDDSVKK 427

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M190|FBL49_ARATH Putative F-box/LRR-repeat protein At3g42770 OS=Arabidopsis thaliana GN=At3g42770 PE=4 SV=1

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 170/388 (43%), Gaps = 43/388 (11%)

Query: 26  FPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQ----QS 81
            PD++L+ I+S L  KEA  TS+LS RW+ L+T + +LDFD  +   S    +     Q 
Sbjct: 4   LPDELLVQILSFLPTKEATSTSLLSKRWRTLFTLSPNLDFDNSLLLQSKKRKWNMRNIQK 63

Query: 82  KYISWVNKVLELHRGSRINQFRICFRL---DAKHKCNITNWVNTAIAKNVRNFELDLSPG 138
            ++ +V+  L L  G  I  F + F+    D   + ++  W+  A+   V    L +   
Sbjct: 64  SFVGFVDSTLALQGGKGIKSFSLKFKETLGDVNGEVDVNRWICNALEHGVSELHLRID-- 121

Query: 139 TYDNYYEIPQECYKN--------LQSGC--GLSGIKSLRSLTLCAVN-VTGEVVEF--FI 185
            Y     +P E + +        +   C   +    SL SL +  ++ +  EV +F  F+
Sbjct: 122 -YTKRCHLPSEIFTSTKLVKLSLVTQSCFPVVPNCISLPSLKVLFLDSIWFEVPQFLIFL 180

Query: 186 HNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC------YSIKEIEI-SAPNLLSF 238
             CP LE+L I Q P  + +    SS  +K L + +       Y +K     S  +L   
Sbjct: 181 TACPALEDLTIYQKPHSVGMPYHISSKTIKRLSVTYTCGYFVDYGLKLFNTPSVVDLYYS 240

Query: 239 KYIGQDI-NLHVGSLPQ-LVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN-EVFA 295
            Y+     ++++ SLP+  +D+ F    +      +  ++S +  +KTL L     +V  
Sbjct: 241 DYVRHKYPHMNLDSLPKATLDIHF----LDDNAANVTELLSGIRNVKTLHLTSSTVKVIL 296

Query: 296 QFSQREFPKLMNL-NISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI 354
              + E P   NL N+ F+   ++    L  +++ CP L  LVL   +    +G +    
Sbjct: 297 LCCKGEIPMFENLINLKFSGKTRQWKFLLPLLLEICPNLTTLVLSGLDQNWFVGFR---- 352

Query: 355 SKHSHQHLKLVELQGFNGREIDFELAFY 382
               +  +K++ +  + G E + +L  Y
Sbjct: 353 -TPPNNQVKMLSIMQYQGSERELKLISY 379

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400 OS=Arabidopsis thaliana GN=At4g10400 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 112/419 (26%), Positives = 178/419 (42%), Gaps = 53/419 (12%)

Query: 21  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 80
           D  S  PD++L+ I+S +  K A  TS+LS RW++LW + T L F  K         Y +
Sbjct: 2   DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSK--------RYSE 53

Query: 81  SKYIS---WVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSP 137
           S++     ++++ L LHR   I  FR+          +I  WV  A+++ +R  EL +  
Sbjct: 54  SEFKRLQCFLDRNLPLHRAPVIESFRLVLSDSHFKPEDIRMWVVVAVSRYIR--ELKIYS 111

Query: 138 GTYDNYYEI-PQECYK-------NLQSGCGLS-----GIKSLRSLTLCAVNVTGE-VVEF 183
             Y     I P   Y         L  G  L       + SL++L L  V    +  ++ 
Sbjct: 112 SHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQR 171

Query: 184 FIHNCPLLENLRITQS--PDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI 241
            + NCP+LE+L +  S   ++  L V+  S+    L      S +E  I  P+LLSF+ +
Sbjct: 172 LLCNCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTP---SSREFVIDTPSLLSFQLV 228

Query: 242 GQDINLH---VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS 298
            ++ N H   + ++P+L +   +V P       IGSI S + +L      G  E F  F+
Sbjct: 229 DRNDNSHTFLIENMPKLREAYINV-PFADIKSLIGSITS-VKRLAISSEVGYGEGFI-FN 285

Query: 299 QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHS 358
             E           T  N+ +   L + +K  P L +L+L    +               
Sbjct: 286 HLE---------ELTLWNKYSSNLLVWFLKNSPNLRELMLVSETDDHENLGMLSWNQPSI 336

Query: 359 HQHLKLVELQGFN-----GREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNM 412
                L  LQ F      GR  D ++A Y+ +NA  L    IK S +R  T L+  T +
Sbjct: 337 VPECMLSSLQKFTWFKYLGRPQDRDIAVYILKNACRLRTATIK-SDTRLFTKLEMITEL 394

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8Y6|FBD5_ARATH FBD-associated F-box protein At1g66310 OS=Arabidopsis thaliana GN=At1g66310 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 189/439 (43%), Gaps = 92/439 (20%)

Query: 21  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDY-Q 79
           DW    P+ +L HI+  L  K+  +TSVLSS+W+ LW     LD D          D+ +
Sbjct: 19  DWLRDLPESLLCHILLNLPTKDVVKTSVLSSKWRNLWRLVPGLDLDSS--------DFTE 70

Query: 80  QSKYISWVNKVLELHRGSRINQFRICFRL-----DAKHKCNITNWVNTAIAKNVRNFELD 134
            + ++S++++ +  H    + +F++ F       +     +I  W+N  + + V N  LD
Sbjct: 71  NNTFVSFIDRFMSFHSDLYLKKFKLRFFCNLNGDEVSENAHIARWINDVVKRKVHN--LD 128

Query: 135 LSPGTYDNYYEIPQECY--KNLQS--GCG-------LSGIKSLRSLTLCAVNVTGEV-VE 182
           L+ G      EIP   Y   +L S   CG       L+ +  ++ + L  V    ++ +E
Sbjct: 129 LTWGA----VEIPPILYLCNSLVSLKLCGVTLPNLELTSLPCVKVIVLEWVKFANDLALE 184

Query: 183 FFIHNCPLLENLRITQSP--DLLSLKVVGSSIPLKCLDIQFCYSIKE---------IEIS 231
             I  C +LE+L + + P  ++  L+V   S+      ++F Y+            +EI+
Sbjct: 185 MLISGCLVLESLTLCRRPNDNVKILRVSSQSL------LRFSYNGSSYKGLHDDLVLEIN 238

Query: 232 APNLLSFKY-----------------IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGS 274
           AP L   K                  +  DIN+ +G      D        + K + I +
Sbjct: 239 APKLKILKLFSHQLTTSFIRNTSSSIVEADINIGLGKKFDPKD--------LPKRNVICN 290

Query: 275 IVSYLPQLKTLELDGCN-EVFAQFSQRE----FPKLMNLNISFTAANQETLLGLSFIMKA 329
            ++ +  +K L +  C  EV   +S+ E    F  L  L++ F   + E    L   +++
Sbjct: 291 FLAGISSVKNLFIAPCTLEVIYDYSRCEPLPLFCNLSYLSVDFYNNSWEI---LPIFLES 347

Query: 330 CPFLEKLVLQIWNNGRR----IGKKRHQISKHSHQHLKLVELQG-FNGREIDFELAFYVF 384
           CP L+ LV+    + +R    +   R  +S      L+ VE++    G   + +L  Y+ 
Sbjct: 348 CPNLKSLVVGSITSPKRRTSVLSGPRRLLSS-----LEYVEIESPLTGEVFEMKLVSYLL 402

Query: 385 ENATMLEKMIIKPSGSRKR 403
           EN+ +L+K+ I    S ++
Sbjct: 403 ENSPILKKLTINLDDSSRK 421

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV93|FDL10_ARATH F-box/FBD/LRR-repeat protein At1g78750 OS=Arabidopsis thaliana GN=At1g78750 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 182/429 (42%), Gaps = 58/429 (13%)

Query: 21  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 80
           DW S  P+ +L  ++  L  K+  ++SVLSSRW+ LW +    +      ++     Y  
Sbjct: 18  DWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYCDFHVRNTFSYDH 77

Query: 81  SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN---ITNWVNTAIAKNVRNFELDLSP 137
           + ++ +V+  +  +  S +  FR+ +      +     I  W+N+ +++ V+   L +  
Sbjct: 78  NTFLRFVDSFMGFNSQSCLQSFRLEYDSSGYGEPKLALIRRWINSVVSRKVK--YLGVLD 135

Query: 138 GTYDNY-YEIPQECYKN------LQSGCGLSGIK-----SLRSLTLCAVNVTGEV-VEFF 184
            + DNY +E+P   Y           G  L+  K     SL+ L L  V     + +E  
Sbjct: 136 DSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKFVSLPSLKELHLSIVKFADHMALETL 195

Query: 185 IHNCPLLENLRI------------TQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISA 232
           I  CP+LENL I             +S  LLS   V  +  +   D+        + I A
Sbjct: 196 ISQCPVLENLNINRSFCDDFEFTCVRSQSLLSFTHVADTDEMLNEDLV-------VAIDA 248

Query: 233 PNL----LSFKYIGQDINLHVGSLPQL-VDVVFHVTPM-------VQKMHCIGSIVSYLP 280
           P L    LS   I   I   + SL +  +D VF++          + K + I   +  + 
Sbjct: 249 PKLKYLRLSDHRIASFILNDLASLVEADIDTVFNLICKKMFNPNDLNKRNMIRDFLVGIS 308

Query: 281 QLKTLELDGCN-EVFAQFSQRE----FPKLMNLNISFTAANQETLLGLSFIMKACPFLEK 335
            +KTL +     EV   +S+ E    F  L +L + F     E    L   +++CP L+ 
Sbjct: 309 SIKTLIIASSTLEVIYDYSRCEPLPLFRNLSSLRVDFYGYKWEM---LPIFLESCPNLKS 365

Query: 336 LVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQ-GFNGREIDFELAFYVFENATMLEKMI 394
           LV+   N   + G     + +     L+ V+++    G  ++ +L  Y+ EN+T+L+K+ 
Sbjct: 366 LVVGSANYREKEGINILSVPRGFLSSLEYVKIERPLKGEAMEMKLVSYLLENSTILKKLT 425

Query: 395 IKPSGSRKR 403
           +    S K+
Sbjct: 426 LCLDDSIKK 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV94|FDL11_ARATH Putative F-box/FBD/LRR-repeat protein At1g78760 OS=Arabidopsis thaliana GN=At1g78760 PE=4 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 193/438 (44%), Gaps = 67/438 (15%)

Query: 11  DAPEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVK 70
           D    + + ED  S  P+ ++  I+  +  K+  ++SVLS RW+ LW +   L+    V+
Sbjct: 6   DEKRARRSEEDRLSNLPESLICQIMLNIPTKDVVKSSVLSKRWRNLWRYVPGLN----VE 61

Query: 71  YMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKC--NITNWVNTAIAKNV 128
           Y  F  DY    ++S+V++ L L R S    FR+ +  D + +   N+  W+N  + + +
Sbjct: 62  YNQFL-DYNA--FVSFVDRFLALDRESCFQSFRLRYDCDEEERTISNVKRWINIVVDQKL 118

Query: 129 RNFELDLSPGTYDNY-YEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHN 187
           +   LD+   T+ N   +IP   Y            +SL SL LC V +    V     +
Sbjct: 119 K--VLDVLDYTWGNEEVQIPPSVY----------TCESLVSLKLCNVILPNPKV----IS 162

Query: 188 CPLLE--NLRITQSPDLLSL-KVVGSSIPLKCLDIQFCY--SIKEIEISAPNLLSFKYIG 242
            PL++   L I +  + L L K++ S   L+ L I       I  + +S+ +LLSFK+IG
Sbjct: 163 LPLVKVIELDIVKFSNALVLEKIISSCSALESLIISRSSVDDINVLRVSSRSLLSFKHIG 222

Query: 243 Q--------------------DINLHV---------GSLPQL-VDVVFHVTPMVQ----- 267
                                +I+ H          GSL +  ++++F++  +       
Sbjct: 223 NCSDGWDELEVAIDAPKLEYLNISDHSTAKFKMKNSGSLVEAKINIIFNMEELPHPNDRP 282

Query: 268 KMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIM 327
           K   I   ++ +  +K L +             E P   NL+         TL  LS  +
Sbjct: 283 KRKMIQDFLAEISSVKKLFISSHTLEVIHDLGCELPLFRNLSSLHIDFEDHTLKMLSTFL 342

Query: 328 KACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQ-GFNGREIDFELAFYVFEN 386
           ++CP ++ LV++  ++ +  G +   I +     L+ V+++    G     ++  Y+ EN
Sbjct: 343 QSCPNVKSLVVEFKDSSKEDGDRVLSIPRCFFTTLEYVKIERPITGEARGMKVVSYILEN 402

Query: 387 ATMLEKMIIKPSGSRKRT 404
           + +L+K+ +  + SR+++
Sbjct: 403 SPILKKLNLCLNSSREKS 420

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 79.0 bits (193), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 103/230 (44%), Gaps = 32/230 (13%)

Query: 21  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 80
           D+ +  PDDIL HI+S +    A RTSVLS RW+++W  T  LD   K   M        
Sbjct: 27  DFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDITLKHGAM-------- 78

Query: 81  SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTY 140
                  N+ L  +    I  F++   L++     + +W+  A+++NV+N  + +   TY
Sbjct: 79  -------NQTLTSYTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLSVFVRDFTY 131

Query: 141 DNYYEIPQECYK--------------NLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIH 186
              Y  P   Y               ++   C +S  KSLR+LTL    +  E +   + 
Sbjct: 132 SKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSW-KSLRNLTLRFCQIPDESIHNILS 190

Query: 187 NCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY-SIKEIEISAPNL 235
            CP+LE+L +  +  LL    +  S  L+ LDI   Y     + I AP++
Sbjct: 191 GCPILESLTL-DTCRLLERLDLSKSPNLRRLDINQQYRRTGPVAIVAPHI 239

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
449440973	475	PREDICTED: putative FBD-associated F-box	0.932	0.844	0.343	3e-57
255540581	457	ubiquitin-protein ligase, putative [Rici	0.913	0.859	0.363	5e-56
255544812	464	ubiquitin-protein ligase, putative [Rici	0.939	0.870	0.339	2e-54
302142991	402	unnamed protein product [Vitis vinifera]	0.744	0.796	0.381	6e-51
357477131	447	F-box family-6 [Medicago truncatula] gi|	0.855	0.823	0.315	8e-41
297736820	487	unnamed protein product [Vitis vinifera]	0.939	0.829	0.276	3e-33
356544606	444	PREDICTED: putative F-box protein At3g58	0.941	0.912	0.277	4e-33
147865783	1789	hypothetical protein VITISV_020815 [Viti	0.939	0.225	0.274	1e-32
242064210	494	hypothetical protein SORBIDRAFT_04g00522	0.837	0.728	0.281	2e-32
260446994	504	OO_Ba0005L10-OO_Ba0081K17.27 [Oryza offi	0.841	0.718	0.289	1e-31

>gi|449440973|ref|XP_004138258.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus] gi|449501454|ref|XP_004161371.1| PREDICTED: putative FBD-associated F-box protein At5g56700-like [Cucumis sativus]

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 237/434 (54%), Gaps = 33/434 (7%)

Query: 21  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFD--KKVKYMSFPPDY 78
           D  S  P DIL+ I+S L LKEAARTS LS +W+ LW+F   L+FD  KK+  + F  + 
Sbjct: 45  DSISHLPQDILVFILSLLPLKEAARTSTLSHKWRCLWSFIPCLNFDAHKKLLDLQFTDEN 104

Query: 79  QQS---KYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDL 135
            +S   +++ WVN+V++ ++GS +   RI F LD+  +C++  WV  A+   ++ FEL+L
Sbjct: 105 LKSERRQFVKWVNRVIDSYKGSNLETLRIRFNLDSSFQCDVDRWVQFAMQWKLKMFELNL 164

Query: 136 S---------PGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIH 186
           S         P ++    + P+E +         S   SL++L L AVNV GE +E F+ 
Sbjct: 165 SDSYDSGIYSPCSFPQLSDGPKENFPRFM----FSNSSSLKTLKLIAVNVGGEALECFLT 220

Query: 187 NCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDIN 246
           N PLLE L +  S  LLSL+VVG+S+ L+ L++  C  ++ +E+SAPNL SFKY+G  ++
Sbjct: 221 NSPLLEILVVEYSHCLLSLRVVGASLKLRQLEVCMCNYLESLEVSAPNLESFKYVGPWLS 280

Query: 247 LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLM 306
           + + + P+L++  F     V+ +     + SY  QL+ L LD   +       R++P L 
Sbjct: 281 MPLKNTPKLLETYFGSEFGVEIIDHFFLLSSYSSQLQKLILDLEVDFMENQGFRKWPILA 340

Query: 307 N---LNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLK 363
           N   L +   A    +L+G + ++KA P L K  L++        +   ++ K  HQ++K
Sbjct: 341 NLKELKLIVIAEGHSSLIGFTSLIKASPSLLKFTLKLDYLDMFEQRPLRKVKKFPHQYIK 400

Query: 364 LVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTL------------KNSTN 411
           +VEL GF G+ ID EL  Y  +NA  LE++I      +   T+            +   N
Sbjct: 401 VVELAGFVGKPIDLELVQYFHKNAVALEEIIFDTRKPKDMGTIFEKKQNAETIAGRECAN 460

Query: 412 MLKAKLPRGVKLTV 425
            L++KL  GVK+T+
Sbjct: 461 GLRSKLFSGVKVTI 474

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540581|ref|XP_002511355.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223550470|gb|EEF51957.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  224 bits (572), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 154/424 (36%), Positives = 241/424 (56%), Gaps = 31/424 (7%)

Query: 1   MTKKARHISEDAPEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFT 60
           M K+ +H S  + E  E  ED  S  P++IL  I+S LT +EA+RTSVLS RW+ LWT T
Sbjct: 1   MAKRFQHSSVTSVE--EAKEDRISHLPEEILTSILSFLTTEEASRTSVLSRRWRILWTLT 58

Query: 61  TSLDFD-------KKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHK 113
           +SL+FD       KK+    F    +++++  WV +VLE+++ S +++F + F L    +
Sbjct: 59  SSLNFDCTKIALGKKLDD-RFALRSERTRFAMWVKRVLEVYKDSNLDEFIVSFDLTCNSR 117

Query: 114 CNITNWVNTAIAKNVRNFELDLSPGT------YDNYYEIPQECYKNLQSGCGLSGIKSLR 167
            ++  W+N A++K ++  E+ L+P +      +D  Y  P +CY  ++   GLS I SLR
Sbjct: 118 RSLDKWMNFAMSKTLKRLEISLAPFSSRKFRFHDECYSFPVDCYSFIRGPEGLSNISSLR 177

Query: 168 SLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKE 227
           SL L  VN+TGEVVE F+ NCPLLE L +  +  L SLKV  SS+ LK L+I  CY +K 
Sbjct: 178 SLCLRYVNMTGEVVEHFLLNCPLLEQLTVAVAYRLESLKVPASSLRLKYLEIFDCYHLKN 237

Query: 228 IEISAPNLLSF------KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQ 281
            EI APNL++       +Y G+ + L    LP L+D+      +       G+  S   Q
Sbjct: 238 FEICAPNLVTILYNQGGRYNGRRMKLQAVHLPHLLDLHLGGPELSITEDFFGACSSSFSQ 297

Query: 282 LKTLELDGCNEVFAQFSQ-----REFPKLMNL-NISF-TAANQETLLGLSFIMKACPFLE 334
           L TL++    EV  Q  Q      +FP+L NL ++ F T  +  ++L +  ++K+ P L 
Sbjct: 298 LMTLKI-VVTEVRMQECQVRLKFPKFPELTNLRHLGFKTEYDICSILAVRLLIKSSPLLN 356

Query: 335 KLVLQIWNNGRRIGKKRHQISKH-SHQHLKLVELQGFNGREIDFELAFYVFENATMLEKM 393
           K  L++ +  R   K+R +   +  HQ+LK+VE+ GF G  +++E   +  +NA+ LEK+
Sbjct: 357 KFTLELADGSRCQIKRRVRTGINCPHQNLKVVEIVGFIGGAVEYEFIMFFLDNASALEKI 416

Query: 394 IIKP 397
           I++P
Sbjct: 417 ILRP 420

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544812|ref|XP_002513467.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547375|gb|EEF48870.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  219 bits (558), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 236/456 (51%), Gaps = 52/456 (11%)

Query: 9   SEDAPEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTS-LDFDK 67
           S++   +  N+ +  S+ P+D+L++I+S LT+KEAARTS+LS+RW++LWT+ T  +DFD 
Sbjct: 21  SDENRARNGNISEHISQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMDFDA 80

Query: 68  KVK--YM-----SFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWV 120
            +   Y+     S   D ++  ++SWVN+VL  H G  +   RICF LD+     I +W+
Sbjct: 81  SLTMWYLQLGLGSKSLDMERHSFVSWVNQVLRSHEGPTMEGLRICFDLDSDFMYEIDSWI 140

Query: 121 NTAIAKNVRNFELDLS---PGT-YDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNV 176
             A+ K V+  E+DL+   P       Y  P     +       S   SL++L L  V+V
Sbjct: 141 TIAMQKRVKRLEIDLTNIEPSIKTTGSYAFPSGLLND-------SSFSSLKTLQLNMVDV 193

Query: 177 TGEVVEFFIHN-CPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNL 235
           TGE ++  + + CPLLE L I  S  L+SLKV GSS+ LK L++  C ++K +EI+A +L
Sbjct: 194 TGEALQHLLLSWCPLLEVLSIVNSTSLVSLKVSGSSLKLKYLEMVCCNNLKYLEITAASL 253

Query: 236 LSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNEVF 294
           +SFKY G  I L   S+P LVD  F   P  Q  +  +     Y+ QL+TL  D    V 
Sbjct: 254 VSFKYYGPLIGLPFKSVPNLVDASFG-GPFCQLTIENLYQFSLYILQLETLRFD----VG 308

Query: 295 AQFSQREFP---------KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN-NG 344
           + +  REFP         K + +  + +A        LS ++K CP L +  L++ +   
Sbjct: 309 SAYLMREFPTNFPILSNVKHLEVTTAVSAVAHCLFPCLS-LLKGCPLLHRFTLKVISCES 367

Query: 345 RRIGKKRHQISK-HSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSG---- 399
             + +   ++ + HSH  LK+VE+ GF G   + EL  Y   NA +L+ +II P      
Sbjct: 368 TLVCRASQKVPEDHSHPCLKVVEVLGFQGNAAEVELVLYFLRNAAVLKNLIISPCAPCYL 427

Query: 400 ------SRKRTTLKNSTNM----LKAKLPRGVKLTV 425
                   K T L  S       L A++P GV   V
Sbjct: 428 RSPSQLKFKETELYQSAKQHAVELGARVPPGVDFVV 463

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142991|emb|CBI20286.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 138/362 (38%), Positives = 201/362 (55%), Gaps = 42/362 (11%)

Query: 20  EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYM-----SF 74
           ED  S  PD+ILI I+S LTL+EAA TSVLS RW+YLWT+T+ L+FD  V  +     SF
Sbjct: 21  EDLLSELPDEILISILSRLTLREAAATSVLSQRWRYLWTYTSRLNFDSVVNKIVRRSHSF 80

Query: 75  PPDYQQS------KYISWVNKVLELHRGSR-INQFRICFRLDAKHKCNITNWVNTAIAKN 127
                        KYI WV+KVL  +RG R +++FR+CF L  + + +I  W   A++KN
Sbjct: 81  ALSTAAGRRRRRRKYIKWVHKVLAKYRGGRNLDEFRVCFDLSKRSRSDIDKWFEFAMSKN 140

Query: 128 VRNFELDL----------SP-----GTYDNYYEIPQECY--KNLQSGCGL-SGIKSLRSL 169
           V+N E D            P       + N+Y+ P      +  +   G+  G KSL++L
Sbjct: 141 VKNLEFDFLRCSSQNQDRDPWFVMLSYFQNFYKFPHRILGVREARDPNGMFVGFKSLKTL 200

Query: 170 TLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE 229
           +L ++NV+ E VE+F+ NCPLLE L +  S  L++L+V G SI L+ L+I  C SI+ IE
Sbjct: 201 SLKSINVSSEAVEYFLSNCPLLERLSVHGSESLVNLRVAGPSIMLRHLEIVKCSSIQTIE 260

Query: 230 ISAPNLLSFKYIGQ---DI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLK 283
           I   NL+SF Y G+   D+   N+H+ + P LV+V+  V  +    + +  + S + QL+
Sbjct: 261 ICDTNLVSFTYRGERKGDLLPNNMHIENSPLLVEVLAGVGRLGFAKNMLLKLSSCVHQLQ 320

Query: 284 TLELDGCNEVFAQFSQRE-FPKLMNLN----ISFTAANQETLLGLSFIMKACPFLEKLVL 338
            L+L   +  F + S+    PKL NL       F    +  LLG   ++K CP LE LVL
Sbjct: 321 ILQLT-VDHFFPERSRAYLLPKLRNLKQLKLTVFVGCPENCLLGFVAMLKKCPHLESLVL 379

Query: 339 QI 340
           Q+
Sbjct: 380 QV 381

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477131|ref|XP_003608851.1| F-box family-6 [Medicago truncatula] gi|355509906|gb|AES91048.1| F-box family-6 [Medicago truncatula]

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 133/422 (31%), Positives = 211/422 (50%), Gaps = 54/422 (12%)

Query: 2   TKKARHISEDAPEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWT-FT 60
           +K  +     +  +K+  ED  ++ PD I I+I++ L +KEAARTS+LS +WK LWT F+
Sbjct: 6   SKDGKQKRAKSNNEKDYEEDIINQLPDGIPINILANLPIKEAARTSILSRKWKNLWTYFS 65

Query: 61  TSLDFD------------KKVK------YMSFPPDYQQSKYISWVNKVLELHRGSRINQF 102
            +L+F+            KKV        M    D ++  Y SW+N++L   + S +   
Sbjct: 66  GTLEFEGSPIMKDMIKDLKKVTGGRLQMAMEIMYDAERQTYTSWINELLSSLQCSTLQGL 125

Query: 103 RICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSG 162
           +  F +  K+  +I NW++ A+ K V+  EL      +   Y +P   +K       +  
Sbjct: 126 KFWFPM--KNVSDIDNWIHFAVQKKVQKLELYFG---HTIVYVLPLHIFK-------VER 173

Query: 163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC 222
             SL  L + ++ VT E++E+ + NC LLE L +  S    ++KV GSS+ LKCL++  C
Sbjct: 174 FNSLCVLRMKSITVTDEMLEYLMCNCQLLETLSLVDSRVPKTMKVSGSSLKLKCLELVRC 233

Query: 223 YSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIV-----S 277
           + + +IEI A  L+SFKY G  +     S+P L +  F            GS V     S
Sbjct: 234 WELTKIEIFAEKLVSFKYYGSHLETEFKSVPCLEEASFG-----------GSFVEFVRES 282

Query: 278 YLPQLKTLELD---GCNEVFAQFSQREFPKLMNL-NISFTAANQETLLGLSFIMKACPFL 333
           +LPQ+K L+LD      EV    SQ   PKL NL ++   A   + +     ++KA P L
Sbjct: 283 FLPQIKVLKLDITQNSPEVIYWLSQ--LPKLKNLKHLELVACADDGISACVMLLKASPSL 340

Query: 334 EKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKM 393
            +L +++ N  +      H+ +   H +LK +EL GF G   + EL  Y+ EN   L+K+
Sbjct: 341 WRLKIKMLNT-KPTYITEHKFTMECHYNLKELELVGFCGAACEVELVMYILENTDELQKI 399

Query: 394 II 395
            I
Sbjct: 400 TI 401

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736820|emb|CBI26021.3| unnamed protein product [Vitis vinifera]

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 131/474 (27%), Positives = 210/474 (44%), Gaps = 70/474 (14%)

Query: 20  EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKK--------VKY 71
           EDW    PDDIL  IIS L LKEA RT +LS RW+ +WT  + L FD             
Sbjct: 15  EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSTS 74

Query: 72  MS-----FPPDYQQSKYISWVNKVLELH-RGSRINQFRICFRLDAKHKCNITNWVNTAIA 125
           MS          Q SK++  V++ +    +G +IN F I F L  +   +I  W+  A+ 
Sbjct: 75  MSGNQPELNSQMQSSKFVERVDQFMYYRSQGRKINSFSIHFPLGKEFMSHIDQWITCAVM 134

Query: 126 KNVRNFELDLS------------PGTYDNYYEIPQECY---------KNLQ-SGCGLSGI 163
           K V N +LDLS              T    YE P   +         K+L+ + C LS +
Sbjct: 135 KGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASCHLSAL 194

Query: 164 KSLRSLT------LCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCL 217
            S  +LT      L  VN++ + ++  +  C  LE L +     L++L     ++ LK L
Sbjct: 195 PSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLEWLSLCVCNGLVNLSFSALNLQLKFL 254

Query: 218 DIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQK----MHCIG 273
            I+ C+ ++ IEI A +L++FKY G   +    ++P+L            +    M+ + 
Sbjct: 255 SIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYALT 314

Query: 274 SIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN----ISFTAANQETLLGLSFIMKA 329
                LPQL+TL+L     +         P   N+       F   + + L  + +I+KA
Sbjct: 315 RFPQDLPQLETLKLLSVLTLKKLQLPENGPTFTNVKQFELTVFPFDDDDDLSWIGYILKA 374

Query: 330 CPFLEKLVLQIWNNGRRIGKKRHQISKH----SHQHLKLVELQGFNGREIDFELAFYVFE 385
            P L+KL L +++      K+  +I +      H+HL ++++ GF G + + +L  Y+  
Sbjct: 375 FPLLQKLELNLFSPS--FTKQPKEIERFLPECPHRHLSILQINGFYGNQHEVDLLKYLLH 432

Query: 386 NATMLEKMIIKPSGSRK--------------RTTLKNSTNMLKAKLPRGVKLTV 425
           N   LE +++ PS                  R  L+ +   L A LPR V+L +
Sbjct: 433 NLVALELLVVAPSKKGGEYISWRSQAEHLWCRARLQGAYEWLLAVLPRAVRLEI 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544606|ref|XP_003540740.1| PREDICTED: putative F-box protein At3g58860-like [Glycine max]

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 125/451 (27%), Positives = 219/451 (48%), Gaps = 46/451 (10%)

Query: 12  APEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTS-LDFDKKVK 70
           A  + EN  D  S  PDDIL  I+S LTLKEAARTSVL+++W+Y WTF +  LDFD  ++
Sbjct: 2   ARNRFENNRDIISTMPDDILGDILSRLTLKEAARTSVLATKWRYHWTFFSGLLDFDHSLR 61

Query: 71  YMSFPPD------------YQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITN 118
                 +            Y+  ++++ +  V++  + S +   RIC  +D      +  
Sbjct: 62  NFHLRREHVGILTKCNVFVYEWERFMTRMANVMKSLKSSSLQGLRIC--MDLGDPWRVAE 119

Query: 119 WVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTG 178
           WV  A  K+V+  +LD S      +YEI      N+    G   +KSL +L L +V+V+G
Sbjct: 120 WVKYAAEKHVQTLDLDFSYHFSVPFYEISLTIVHNVFPSRGYE-MKSLCNLRLSSVDVSG 178

Query: 179 EVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF 238
           EV+E  + +CPLLE++ + +S  L+ LKV G ++ LK L++  C  I +++I A NL++F
Sbjct: 179 EVIEGLLASCPLLESICVIESKRLVRLKVRGEALRLKHLELVEC-RIMDLDIYAVNLVTF 237

Query: 239 KYIGQDINLHVGSLPQLVDVVF------HVTPMVQKMHCIGSIVSYLPQLKTLELDGCNE 292
           +Y G+       ++P LV+  F      ++   + ++   G ++    Q+  L+L+  ++
Sbjct: 238 RYQGKYGKFKFQNVPSLVEASFGGIFCSYLESDMDRVDFYGVLL----QINVLKLE-LSK 292

Query: 293 VFAQFSQR--EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKK 350
            +  F +    F  +  L I     +   L     ++ + P +  L ++   N   + ++
Sbjct: 293 PYPGFLEGLPVFDNVGQLEIRIPHRSGAALDHHVSLLSSFPSVRVLKIKFQRNDLSVVEE 352

Query: 351 RHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGS--------- 400
             + + +H + +L+ +E+ GF       EL   +FE A  L  +++ P  S         
Sbjct: 353 NWKANLEHEYPNLRELEVSGFRRDPSQMELLISIFEKAPNLNSVVVDPLSSIHVDRSPDV 412

Query: 401 ------RKRTTLKNSTNMLKAKLPRGVKLTV 425
                  +R T K   + LK  LP   +L V
Sbjct: 413 KARYREMRRETTKWLADALKPHLPPLTQLIV 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865783|emb|CAN81149.1| hypothetical protein VITISV_020815 [Vitis vinifera]

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 209/474 (44%), Gaps = 70/474 (14%)

Query: 20   EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKK--------VKY 71
            EDW    PDDIL  IIS L LKEA RT +LS RW+ +WT  + L FD             
Sbjct: 1317 EDWLVELPDDILSTIISLLPLKEAVRTGILSKRWRSIWTCHSELWFDAASVLGIGDCSXS 1376

Query: 72   MS-----FPPDYQQSKYISWVNKVLELH-RGSRINQFRICFRLDAKHKCNITNWVNTAIA 125
            MS          Q  K++  V++ +    +G +IN F I F L  +   +I  W+  A+ 
Sbjct: 1377 MSGNQPELNSQMQSXKFVERVDQFMYYRSQGPKINSFSIHFPLGKEFMSHIDQWITCAVM 1436

Query: 126  KNVRNFELDLS------------PGTYDNYYEIPQECY---------KNLQ-SGCGLSGI 163
            K V N +LDLS              T    YE P   +         K+L+ + C LS +
Sbjct: 1437 KGVENIDLDLSEYFSFNLKRDDTSSTAFQIYEFPCRLFSVPGGRCTLKHLRLASCHLSAL 1496

Query: 164  KSLRSLT------LCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCL 217
             S  +LT      L  VN++ + ++  +  C  LE L +     L++L     ++ LK L
Sbjct: 1497 PSSNTLTSLITVDLQRVNISDQQLQDLLSTCSHLERLSLCVCNGLVNLSFSALNLQLKFL 1556

Query: 218  DIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQK----MHCIG 273
             I+ C+ ++ IEI A +L++FKY G   +    ++P+L            +    M+ + 
Sbjct: 1557 SIKNCFRLETIEIHAADLVTFKYGGHLPSFSFKNVPKLAKASLEFFIKSSRTEGVMYALT 1616

Query: 274  SIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN----ISFTAANQETLLGLSFIMKA 329
                 LPQL+TL+L     +         P   N+       F   + + L  + +I+KA
Sbjct: 1617 RFPQDLPQLETLKLLSVLTLKKLQLPENGPTFTNIKQFELTVFPFDDDDDLSWIGYILKA 1676

Query: 330  CPFLEKLVLQIWNNGRRIGKKRHQISKH----SHQHLKLVELQGFNGREIDFELAFYVFE 385
             P L+KL L +++      K+  +I +      H+HL ++++ GF G + + +L  Y+  
Sbjct: 1677 FPLLQKLELNLFSPS--FTKQPKEIERFLPECPHRHLSILQINGFYGNQHEVDLLKYLLH 1734

Query: 386  NATMLEKMIIKPSGSRK--------------RTTLKNSTNMLKAKLPRGVKLTV 425
            N   LE +++ PS                  R  L+ +   L A LPR V+L +
Sbjct: 1735 NLVALELLVVAPSKKGGEYISWRSQAEHLWCRARLQGAYEWLLAVLPRAVRLEI 1788

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242064210|ref|XP_002453394.1| hypothetical protein SORBIDRAFT_04g005220 [Sorghum bicolor] gi|241933225|gb|EES06370.1| hypothetical protein SORBIDRAFT_04g005220 [Sorghum bicolor]

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 206/426 (48%), Gaps = 66/426 (15%)

Query: 29  DILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDK-KVKYMSFPPD------YQQS 81
           DIL  I+S L + +A RTSVLS + K++W   T+L+FD   ++   F P        + +
Sbjct: 5   DILSTILSLLPINDAVRTSVLSRKLKHVWRSHTNLNFDTGTMRKGYFRPSKGYYSGLKDN 64

Query: 82  KYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYD 141
           ++++ V+ V++ H G+ +   +I FRL +KH  +I +WV+ AIA   + F ++LS G+  
Sbjct: 65  EFVTRVDTVVQQHNGTGVEHMKIRFRLHSKHADHIDSWVSVAIASKTKEFVINLSGGSRG 124

Query: 142 NY---------------YEIPQECYK---------------NLQSGCGLSGIKSLRSLTL 171
            +               Y  P + +                +LQ      G  +L+SLTL
Sbjct: 125 IFFLRGGRIRRMVGEEPYSFPSQFFSPNNCSHLRCLELWSVSLQLPSDFKGCLNLKSLTL 184

Query: 172 CAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEIS 231
             V++T E V+  +  C LLE L I+    + S++++     L  L +  C  ++EIE++
Sbjct: 185 VDVSITDEDVQCILSTCNLLEFLEISYCSMVTSIRMLHPLDRLMHLVVDICRKLQEIELN 244

Query: 232 APNLLSFKYIGQDINLHVGSLPQL--VDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDG 289
             +L +F+Y G+ + L   S  +L  ++VVF +T      + +    S  P+L+TL L  
Sbjct: 245 C-SLTTFQYSGRTVPLKFASTSRLTNINVVF-LTDQSALSYMVTGFPSTSPRLETLTL-Y 301

Query: 290 CNE---VFAQFSQREFPKLMNLNISFTAANQET----LLGLSFIMKACPFLEKLVLQIW- 341
           C E           +F  L +L +    A + T    +L  +++++  PF+EK+ L++W 
Sbjct: 302 CYEHERTLVPEGPFKFTCLRDLRLDLVFAGKGTRNVDVLDYAYLLEIAPFMEKMELRMWI 361

Query: 342 ----------NNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLE 391
                     +   RIG        H H HLK V + GF G +   ELA ++  +  +LE
Sbjct: 362 RWHHQPYCKEDGELRIGL------PHQHAHLKYVRISGFFGHKDQVELALHILGSCMVLE 415

Query: 392 KMIIKP 397
           KM+I P
Sbjct: 416 KMVITP 421

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260446994|emb|CBG76276.1| OO_Ba0005L10-OO_Ba0081K17.27 [Oryza officinalis]

 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/428 (28%), Positives = 197/428 (46%), Gaps = 66/428 (15%)

Query: 29  DILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDK----KVKYMSFPP-------D 77
           DIL  I+SGL + +A RTSVLS +WKY+W   T+L  +K    K   ++  P       D
Sbjct: 22  DILSKILSGLPVNDAIRTSVLSRKWKYVWCSHTNLTLNKGTMRKPYVLTLTPYRWRWLRD 81

Query: 78  YQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLS- 136
           Y+   +I+ V+ VL  H G  + +  I FRL +KH  +I  WVN  IA   +   ++LS 
Sbjct: 82  YE---FITRVDAVLRQHSGMGVQRMEIKFRLHSKHADHIDRWVNFVIASKTKELVINLSG 138

Query: 137 -----------------------------PGTYDNYYEIPQECYKNLQSGCGLSGIKSLR 167
                                          +Y +Y    +    +LQ      G  +L+
Sbjct: 139 HDKGSFFTELSQGIRIIKEPPYNLPSQLLSPSYGSYLRCLELTTVSLQLPADFKGFLNLK 198

Query: 168 SLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKE 227
            L+L  +++T E V+  +  C LLE L I+    + S++++     LK L +  C ++KE
Sbjct: 199 ILSLVDMSITDEDVQCMLSKCNLLEFLDISYCRMVTSIRMLHPLDRLKHLVVDNCRNLKE 258

Query: 228 IEIS-APNLLSFKYIGQDINLHVGSLPQL--VDVVFHVTPMVQKMHCIGSIVSYLPQLKT 284
           IE++ +P  L F   G  + L   S  +L  +++VF +T      + I    S LP+L+T
Sbjct: 259 IELNCSPTTLKFS--GTMVPLIFASTSRLTNINIVF-ITYQSALSYIITGFPSTLPRLET 315

Query: 285 LELDGCNE---VFAQFSQREFPKLMNLNISFTAANQE-----TLLGLSFIMKACPFLEKL 336
           L L  C E           +F  L NL +    +  E      +L  ++I++  PF+E L
Sbjct: 316 LTLH-CAERERTIVPEGPFKFTYLRNLRLELVLSGHENTRKTNVLDYAYILEIAPFMETL 374

Query: 337 VLQIWNNGRRIGKKRHQISK-------HSHQHLKLVELQGFNGREIDFELAFYVFENATM 389
            L +W    R    R +  +       H H HLK V + GF G +   ELA ++  ++ +
Sbjct: 375 ELSMWAMNCRHRPYREEDGELRIVGPPHQHAHLKSVRISGFFGHKDQVELALHILRSSVV 434

Query: 390 LEKMIIKP 397
           LEKM+I P
Sbjct: 435 LEKMVITP 442

Source: Oryza officinalis

Species: Oryza officinalis

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
TAIR|locus:2157922	444	AT5G53840 "AT5G53840" [Arabido	0.839	0.813	0.265	1.7e-17
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.858	0.902	0.274	8.1e-17
TAIR|locus:2201522	456	AT1G66300 "AT1G66300" [Arabido	0.420	0.396	0.264	2.3e-16
TAIR|locus:2008276	435	AT1G51370 "AT1G51370" [Arabido	0.827	0.818	0.269	1.9e-15
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.411	0.386	0.261	3.4e-15
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.502	0.449	0.289	2.2e-14
TAIR|locus:2162454	437	AT5G22700 "AT5G22700" [Arabido	0.425	0.418	0.262	5.4e-14
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.569	0.545	0.270	6.5e-14
TAIR|locus:2155327	438	AT5G44950 "AT5G44950" [Arabido	0.525	0.515	0.291	7.3e-14
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.560	0.579	0.270	8.8e-14

TAIR|locus:2157922 AT5G53840 "AT5G53840" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 108/407 (26%), Positives = 194/407 (47%)

Query:    20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQ 79
             E+  S+ PD ++  I+S L+ K+A RTS+LS+RW+ LW     LDFD + +  SF     
Sbjct:    17 EERLSQLPDHLICVILSHLSTKDAVRTSILSTRWRNLWQLVPVLDFDSR-ELRSF----- 70

Query:    80 QSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGT 139
              S+++S+      LH+ S I + R+C   D      +T+W++      +++  +D+S  T
Sbjct:    71 -SEFVSFAGSFFYLHKDSYIQKLRVCI-YDLAGNYYLTSWIDLVTRHRIQH--IDISVFT 126

Query:   140 YDNYYEIPQECYK-----NLQ-SGCGLSGIK-----SLRSLTLCAVNVTGEVVEFFIHNC 188
                +  IP   Y      +L+ S   +  ++      L+ L L  VN T E     I +C
Sbjct:   127 CSGFGVIPLSLYTCDTLVHLKLSRVTMVNVEFVSLPCLKILDLDFVNFTNETTLDKIISC 186

Query:   189 -PLLENLRITQSPDLLSLKVVG-SSIPLKCLDIQFCYSIKE-IEISAPNL--LSFK-YIG 242
              P+LE L I +S +  ++K++   S  LK ++I   +     + I  P L  LS K +  
Sbjct:   187 SPVLEELTIVKSSED-NVKIIQVRSQTLKRVEIHRRFDRHNGLVIDTPLLQFLSIKAHSI 245

Query:   243 QDIN-LHVGSLPQL-VDVVFHVTPMVQKMHCIGSIVSYLPQLKTLEL-DGC-NEVFAQFS 298
             + I  +++G   ++ +DV       +          + + ++++L +  G   ++F    
Sbjct:   246 KSIEFINLGFTTKVDIDVNLLDPNDLSNRSMTRDFFTTISRVRSLVIRHGTIKDIFHYME 305

Query:   299 Q---REFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS 355
                 ++F  L  L+   + +N E LL L   +K+CP LE L L++ +  +   KK   +S
Sbjct:   306 LEPLQQFCYLSELSAVCSISNLEMLLNL---LKSCPKLESLSLKLVDYEKN--KKEEVMS 360

Query:   356 KHSH-----QHLKLVELQG-FNGREIDFELAFYVFENATMLEKMIIK 396
                        LK V+L+    G   + ++A Y  EN+T+LEK+ +K
Sbjct:   361 STVPPPCLVSSLKFVKLESQLLGCGTELKVARYFLENSTILEKLTLK 407

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 8.1e-17, P = 8.1e-17
 Identities = 114/416 (27%), Positives = 186/416 (44%)

Query:    21 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 80
             D  S  PD++L+ I+S +  K A  TS+LS RW++LW + T L F  K +Y     ++++
Sbjct:     2 DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGSK-RYSE--SEFKR 58

Query:    81 SKYISWVNKVLELHRGSRINQFRICFRLDAKHKC-NITNWVNTAIAKNVRNFELDLSPGT 139
              +   ++++ L LHR   I  FR+    D+  K  +I  WV  A+++ +R  EL +    
Sbjct:    59 LQ--CFLDRNLPLHRAPVIESFRLVLS-DSHFKPEDIRMWVVVAVSRYIR--ELKIYSSH 113

Query:   140 YDNYYEI-PQECYK-------NLQSGCGLSG-----IKSLRSLTLCAVNVTGE-VVEFFI 185
             Y     I P   Y         L  G  L       + SL++L L  V    +  ++  +
Sbjct:   114 YGEKQNILPSSLYTCKSLVILKLDGGVLLDVPRMVCLPSLKTLELKGVRYFKQGSLQRLL 173

Query:   186 HNCPLLENLRITQS--PDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ 243
              NCP+LE+L +  S   ++  L V+  S+    L      S +E  I  P+LLSF+ + +
Sbjct:   174 CNCPVLEDLVVNLSHHDNMGKLTVIVPSLQRLSLSTP---SSREFVIDTPSLLSFQLVDR 230

Query:   244 DINLH---VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR 300
             + N H   + ++P+L +   +V P       IGSI S + +L      G  E F  F+  
Sbjct:   231 NDNSHTFLIENMPKLREAYINV-PFADIKSLIGSITS-VKRLAISSEVGYGEGFI-FNHL 287

Query:   301 EFPKLMNLNIS----FTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISK 356
             E   L N   S    +   N   L  L  + +     E L +  WN    + +    +S 
Sbjct:   288 EELTLWNKYSSNLLVWFLKNSPNLRELMLVSETDDH-ENLGMLSWNQPSIVPEC--MLS- 343

Query:   357 HSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNM 412
              S Q     +   + GR  D ++A Y+ +NA  L    IK S +R  T L+  T +
Sbjct:   344 -SLQKFTWFK---YLGRPQDRDIAVYILKNACRLRTATIK-SDTRLFTKLEMITEL 394

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2201522 AT1G66300 "AT1G66300" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.3e-16, Sum P(2) = 2.3e-16
 Identities = 56/212 (26%), Positives = 103/212 (48%)

Query:     6 RHISEDAPEKKENLE-DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLD 64
             R  S ++ +KK   E DW    P+ ++ H++  L+ K+  +  VLS++W+YLW +   LD
Sbjct:    13 RLCSPESSDKKSGYEVDWVRDLPESLICHVLLNLSTKDVIKNCVLSTKWRYLWRYVPGLD 72

Query:    65 FDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDA-----KHKCNITNW 119
              D       F  +Y  + ++S+V++ L  +  S +N+F++ F  D           +  W
Sbjct:    73 LDCS----DFT-EY--NTFVSFVDRFLSTNTESYLNKFKLGFDCDLVGDEETGNAQMARW 125

Query:   120 VNTAIAKNVRNFELDLSPGTYDNYYEIPQECY--KNLQSG--CGLS-------GIKSLRS 168
             +N  + + V++  LDL  G      EIP   Y  K+L S   CG+         + S++ 
Sbjct:   126 INDVVKRKVQH--LDLEWGAL----EIPPIVYVCKSLVSLKLCGVILPIPEFVCLPSVKV 179

Query:   169 LTLCAVNVTGEV-VEFFIHNCPLLENLRITQS 199
             + L  V    ++ +E  I  C +L++L + +S
Sbjct:   180 IVLDWVKFANDLALEMLISGCLVLKSLTLCRS 211

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2008276 AT1G51370 "AT1G51370" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 1.9e-15, P = 1.9e-15
 Identities = 112/415 (26%), Positives = 189/415 (45%)

Query:    14 EKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMS 73
             +K  + ED  S+ P+ ++  I+  L+ K++ RTS LS++W+YLW     LD D    Y S
Sbjct:    12 DKVSHEEDRISQLPEPLISEILFHLSTKDSVRTSALSTKWRYLWQSVPGLDLDP---YAS 68

Query:    74 FPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKH-KCNITNWVNTAIAKNVRNFE 132
                    +  +S+V    + HR S I + R+   L   H K ++ +W++ A  + +++ +
Sbjct:    69 S----NTNTIVSFVESFFDSHRDSWIRKLRL--DLGYHHDKYDLMSWIDAATTRRIQHLD 122

Query:   133 LDLSPGTYDNYYEIPQECYK-----NLQSGCGLSGIKSLRSLTLCAV----NVT--GEV- 180
             +      +DN  +IP   Y      +L+    +       SL    +    NV+   E  
Sbjct:   123 VHCF---HDN--KIPLSIYTCTTLVHLRLRWAVLTNPEFVSLPCLKIMHFENVSYPNETT 177

Query:   181 VEFFIHNCPLLENLRI--TQSP--DLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLL 236
             ++  I   P+LE L +  T  P  ++L L+    S  LK LDI       ++ I AP L 
Sbjct:   178 LQKLISGSPVLEELILFSTMYPKGNVLQLR----SDTLKRLDIN---EFIDVVIYAPLLQ 230

Query:   237 SFK---YIGQDINLHVGSLPQLVDVVFHVTP-MVQKMHCIGSIVSYLPQLKTLELDG--C 290
               +   Y  ++  +     P  +D+ F  T    QK   I  I+  + +++ L +     
Sbjct:   231 CLRAKMYSTKNFQIISSGFPAKLDIDFVNTGGRYQKKKVIEDILIDISRVRDLVISSNTW 290

Query:   291 NEVFAQFSQR---EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG--R 345
              E F     R   +F  + +LN  F  ++ E L  L   +++CP LE L+L++  N   R
Sbjct:   291 KEFFLYSKSRPLLQFRYISHLNARFYISDLEMLPTL---LESCPKLESLILEMVKNQSTR 347

Query:   346 RIGKKRH---QISKHSH---QHLKLVELQGFNGR-EIDFELAFYVFENATMLEKM 393
             R G+KR     +S         LK VEL+    R E + EL  YV  N+T+L+K+
Sbjct:   348 RHGEKREPNVMVSTVPWCLVSSLKFVELKRSIPRYEGEMELVRYVLTNSTVLKKL 402

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
 Identities = 51/195 (26%), Positives = 91/195 (46%)

Query:    21 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 80
             DW S  P+ +L  ++  L  K+  ++SVLSSRW+ LW +    +      ++     Y  
Sbjct:    18 DWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYCDFHVRNTFSYDH 77

Query:    81 SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN---ITNWVNTAIAKNVRNFELDLSP 137
             + ++ +V+  +  +  S +  FR+ +      +     I  W+N+ +++ V+   L +  
Sbjct:    78 NTFLRFVDSFMGFNSQSCLQSFRLEYDSSGYGEPKLALIRRWINSVVSRKVKY--LGVLD 135

Query:   138 GTYDNY-YEIPQECY--KNLQ----SGCGLSGIK-----SLRSLTLCAVNVTGEV-VEFF 184
              + DNY +E+P   Y  + L      G  L+  K     SL+ L L  V     + +E  
Sbjct:   136 DSCDNYEFEMPPTLYTCETLVYLTLDGLSLASPKFVSLPSLKELHLSIVKFADHMALETL 195

Query:   185 IHNCPLLENLRITQS 199
             I  CP+LENL I +S
Sbjct:   196 ISQCPVLENLNINRS 210

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 74/256 (28%), Positives = 118/256 (46%)

Query:    12 APEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKY 71
             +P   +   D  SR PDDIL  I+S L  + A +TSVLS RW+++W+ T SL F +    
Sbjct:    28 SPSYLKEAGDLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFHRD--- 84

Query:    72 MSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAK------HKCNITNWVNTAIA 125
                 PD         +N++L+ +R  ++  FRIC    A          +I +W+N A++
Sbjct:    85 ---RPD------APCINRILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMS 135

Query:   126 KNVRNFELDLSPGTYDNYYEIPQECYKN-------LQSGCGLSGIK----------SLRS 168
             +NV N  L L    YD    IP+  Y N       L  GC    I           SL++
Sbjct:   136 RNVENLSLYLDEDKYD----IPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLKN 191

Query:   169 LTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEI 228
             L+L   N++ E +   +  CP+LE+L +     L  L +   S  L  L+I     ++  
Sbjct:   192 LSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDL-SKSPRLITLEITRRCRMEPT 250

Query:   229 EISAPNLLSFKYIGQD 244
             ++ AP++   + I  +
Sbjct:   251 QLVAPHIRCLRLINSE 266

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162454 AT5G22700 "AT5G22700" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
 Identities = 53/202 (26%), Positives = 99/202 (49%)

Query:    18 NLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPD 77
             N  D  S  PD++L  I+S L  K A  TS+LS+RW+ +W  T  LD D      +F   
Sbjct:     3 NRGDRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVLDIDID----AFD-- 56

Query:    78 YQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSP 137
                + ++S+ ++ LE  + S +++F++    D    C I  W+  A+ + +++ E+D   
Sbjct:    57 -DATTFVSFASRFLEFSKDSCLHKFKLSVERDDVDMCTIMPWIQDAVNRRIQHLEVDCRF 115

Query:   138 GTYDNYYEIPQECYKNLQSGCGLSGIK-------SLRSLTLCAV--NVTG--EVVEFFIH 186
               +     +     + L S   L  +        SL +L +  +  N+    E +E FI 
Sbjct:   116 SFHFEAVYLTLYLSETLVS-LRLHFVTLHRYEFVSLPNLKVMHLEENIYYCLETLENFIS 174

Query:   187 NCPLLENLRITQSPDLLSLKVV 208
             +CP+LE+L + +  D+++ K++
Sbjct:   175 SCPVLEDLTVVRIVDIITEKIL 196

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
 Identities = 74/274 (27%), Positives = 121/274 (44%)

Query:    10 EDAPEKKENLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKV 69
             E + ++K+   D  S  PD +L  I+S L+ KE+  TSVLS RW+ LW     LD D   
Sbjct:     4 ETSVKEKQRNSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSN- 62

Query:    70 KYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVR 129
                +FP D     ++S+VN+ L       + +F++ + ++        +W+N  I + V 
Sbjct:    63 ---NFPDD---DVFVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVC 116

Query:   130 NFELDLSPGTYDNYYEIPQECYK-----NLQS-GCGLSGIKSL-----RSLTLCAVNVTG 178
             +F +       D   ++P   Y      NLQ     L   +S+     + + L  V    
Sbjct:   117 HFNVHNEVDDDDELVKMPLSLYSCERLVNLQLYRVALDHPESVSLPCVKIMHLDMVKYDA 176

Query:   179 E-VVEFFIHNCPLLENLRITQSP-DLLSLKVVGSSIPLKCLDIQF-CYSIKE--IEISAP 233
             +  +E  I  CP+LE L I + P D L +  V S   LK   I    Y  +   + I AP
Sbjct:   177 DSTLEILISGCPVLEELTIVRDPNDSLEVVCVRSQ-SLKSFKIDSERYESQNHVVTIDAP 235

Query:   234 NLLSFK---YIGQDINLH-VGSLPQL-VDVVFHV 262
              L       +      +H +G   ++ +DV+F+V
Sbjct:   236 RLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFNV 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155327 AT5G44950 "AT5G44950" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
 Identities = 76/261 (29%), Positives = 125/261 (47%)

Query:    21 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 80
             D  S  PD +L HI+  L ++E+ RTSVLSSRW+ LW     LD    V    FP D   
Sbjct:     4 DRISELPDGLLNHILMYLHIEESIRTSVLSSRWRKLWLKVPGLD----VNVHDFPAD--G 57

Query:    81 SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCN-ITNWVNTAIAKNVRNFEL---DLS 136
             + + S ++K LE++RG R+  F++ +  +  +  +    W+ T + + +++ ++   D  
Sbjct:    58 NLFESLMDKFLEVNRG-RLQNFKLNYESNLYYLMDRFVPWIATVVDRGIQHLDVTATDCP 116

Query:   137 PGTYDNYYEIPQECY-KNLQS----GCGLSGIKSLRSLTLCAVNVTGEV------VEFFI 185
             P T D  +     C  K L S      GL   K + SL    +    ++       E  I
Sbjct:   117 PWTID--FMPANICKSKTLVSLKLVNVGLDTPKFVVSLPCLKIMHLEDIFYSPLIAENLI 174

Query:   186 HNCPLLENLRITQS-PDLLS-LKVVGSSIPLKCLDIQFCYSIKE----IEISAPNL--LS 237
               CP+LE+L I ++  D L+ L+V+  +  LK   + F + +      +EI AP L  +S
Sbjct:   175 SGCPVLEDLTIVRNHEDFLNFLRVMSQT--LKNFRLTFDWGMGSNDFSVEIDAPGLKYMS 232

Query:   238 FKYIGQDINLHVGSLPQLVDV 258
             F+    D  + V +L  LV +
Sbjct:   233 FRDSQSD-RIVVKNLSSLVKI 252

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 71/262 (27%), Positives = 128/262 (48%)

Query:    21 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 80
             D+ S  P  I+ +I++ L++++A RTSVLSS+W+Y W+  T L FD+K    S      +
Sbjct:     6 DFISDLPQSIIENILTRLSIRDAIRTSVLSSKWRYKWSTLTDLVFDEKCVSPSNDRCVVE 65

Query:    81 SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTY 140
             +  + ++  VL LH+G  I++F++      + + +I  W+       ++   L L  G +
Sbjct:    66 TNLVRFITGVLLLHQGP-IHKFQLSTSFK-QCRPDIDQWLLFLSRNGIKELVLKLGEGEF 123

Query:   141 D------NYYEIP--QECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLE 192
                    N  ++   + C+          G   L+SL L  + V  EV+E  I  CPLLE
Sbjct:   124 RVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYLKSLNLHQILVAPEVIESLISGCPLLE 183

Query:   193 NLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFK---YIGQDI-NL 247
              L ++   D L L +   ++    LD +F    K+I + + P L++     Y+ +D+ + 
Sbjct:   184 FLSLSYF-DSLVLSISAPNLMYLYLDGEF----KDIFLENTPKLVAISVSMYMHEDVTDF 238

Query:   248 HVGSLPQLVDVVFHVTPMVQKM 269
                S   LV  +  V P+++K+
Sbjct:   239 EQSSDYNLVKFLGGV-PLLEKL 259

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	430
pfam08387	51	pfam08387, FBD, FBD	2e-06
smart00579	72	smart00579, FBD, domain in FBox and BRCT domain co	0.001
pfam00646	48	pfam00646, F-box, F-box domain	0.002

>gnl|CDD|203925 pfam08387, FBD, FBD

 Score = 44.4 bits (106), Expect = 2e-06
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 361 HLKLVELQGFNGREIDFELAFYVFENATMLEKMII 395
            L+ VE +G+ G E + ELA Y+ ENA +L+KM I
Sbjct: 15  SLETVEWRGYRGEEEELELAKYILENARVLKKMTI 49

This region is found in F-box (pfam00646) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes. In fact, several family members are annotated as being similar to transcription factors. Length = 51

>gnl|CDD|214730 smart00579, FBD, domain in FBox and BRCT domain containing plant proteins

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 361 HLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKRTTLKNSTNMLKAKLPR 419
            L+++E++G+ G E + EL  Y  ENA  L+K+ I    S     L+    +L   LPR
Sbjct: 6   SLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDEEKLEILKELL--SLPR 62

Length = 72

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 36.0 bits (84), Expect = 0.002
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 21 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWT 58
                PDD+L+ I+S L  K+  R S++S RW+ L  
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVD 38

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	430
KOG4341	483	consensus F-box protein containing LRR [General fu	99.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.58
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.16
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	98.85
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.77
KOG4341	483	consensus F-box protein containing LRR [General fu	98.34
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.33
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.28
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.17
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.02
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.83
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.77
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.64
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.32
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.29
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.07
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.73
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.66
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.61
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.95
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.49
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	95.17
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.15
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.69
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.6
PRK15386	426	type III secretion protein GogB; Provisional	93.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	93.23
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	92.71
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	92.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	91.68
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.2
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	91.19
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	90.8
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	90.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	89.97
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	89.73
PRK15386	426	type III secretion protein GogB; Provisional	89.4
PF13013	109	F-box-like_2: F-box-like domain	87.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	87.56
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	86.0
KOG2123	388	consensus Uncharacterized conserved protein [Funct	85.28
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	84.82
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	84.28
KOG0617	264	consensus Ras suppressor protein (contains leucine	83.87
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	83.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	83.34
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	82.69
KOG3864	221	consensus Uncharacterized conserved protein [Funct	80.14

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.63  E-value=2.2e-17  Score=152.50  Aligned_cols=344  Identities=17%  Similarity=0.228  Sum_probs=211.1

Q ss_pred             CCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh------cccCceeeecCCccccCCCCchhHhHHHHHHHHHHhhcCCC
Q 014141           24 SRFPDDILIHIISGLTLKEAARTSVLSSRWKYL------WTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGS   97 (430)
Q Consensus        24 s~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~   97 (430)
                      -.||.|++.+|||+|.++...|++++|+-|..+      |..+...+|..++         +     .-|-..+.++.|.
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv---------~-----g~VV~~~~~Rcgg  138 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV---------D-----GGVVENMISRCGG  138 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC---------C-----CcceehHhhhhcc
Confidence            359999999999999999999999999999864      7777766664441         1     1222233344456


Q ss_pred             ceeEEEEEEecCCCCCccHhHHHHHH--hhcCcEEEEEEcCCCCCCCc-eeeccccccccCCCCCCCCCCCCceEEEeeE
Q 014141           98 RINQFRICFRLDAKHKCNITNWVNTA--IAKNVRNFELDLSPGTYDNY-YEIPQECYKNLQSGCGLSGIKSLRSLTLCAV  174 (430)
Q Consensus        98 ~l~~l~l~~~~~~~~~~~v~~wl~~~--~~~~v~~L~l~~~~~~~~~~-~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~  174 (430)
                      ++++++++......+.    . +..+  ..+++++|.+..+...++.. +.+.             ..|+.|++|.|..|
T Consensus       139 ~lk~LSlrG~r~v~~s----s-lrt~~~~CpnIehL~l~gc~~iTd~s~~sla-------------~~C~~l~~l~L~~c  200 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDS----S-LRTFASNCPNIEHLALYGCKKITDSSLLSLA-------------RYCRKLRHLNLHSC  200 (483)
T ss_pred             ccccccccccccCCcc----h-hhHHhhhCCchhhhhhhcceeccHHHHHHHH-------------Hhcchhhhhhhccc
Confidence            6899998775332111    1 2222  23477777665554332211 2221             46688888888885


Q ss_pred             -EEcchhHHHHhhcCCcccceeeccCCCCceeeEe---cCCCCcceEEEeecCCcc-----EEEEeCCceeEEEEeccee
Q 014141          175 -NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV---GSSIPLKCLDIQFCYSIK-----EIEISAPNLLSFKYIGQDI  245 (430)
Q Consensus       175 -~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~---~~~~~L~~L~l~~c~~l~-----~i~i~~P~L~~L~~~~~~~  245 (430)
                       .+++..+..+..+||+|+.|.+..|+.+..=.+.   ..+..++.+...+|...+     .+.-..+.+.++++..+..
T Consensus       201 ~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~  280 (483)
T KOG4341|consen  201 SSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ  280 (483)
T ss_pred             chhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence             5666777778888888888888888766541111   234556677666775321     2233344555555322210


Q ss_pred             --e----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeecccc---cCCCCccceEEEEEeec
Q 014141          246 --N----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQFS---QREFPKLMNLNISFTAA  315 (430)
Q Consensus       246 --~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~~l---~~~~~~L~~L~l~~~~~  315 (430)
                        .    ..--.+..|+.+.......  ..+... .+..++++|+.|.+..+.+.....+   -...+.|..|+++-+..
T Consensus       281 lTD~~~~~i~~~c~~lq~l~~s~~t~--~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  281 LTDEDLWLIACGCHALQVLCYSSCTD--ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGL  358 (483)
T ss_pred             ccchHHHHHhhhhhHhhhhcccCCCC--CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccce
Confidence              0    0001233333333322111  112222 7888999999999988875443332   33378888888866543


Q ss_pred             CccchhhHHHHHhhCCCceEEEEEEeccccccccCcccc---ccCcCCCccEEEEeeeecChh-hHHHHHHHHhcccccc
Q 014141          316 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI---SKHSHQHLKLVELQGFNGREI-DFELAFYVFENATMLE  391 (430)
Q Consensus       316 ~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~---~~~~~~~L~~v~i~~~~g~~~-e~~l~~~ll~~a~~Le  391 (430)
                      .  ....+..+-.+||.|++|++.-+   ....++|...   ..|.+.+|+.+++.+.....+ .++    .+.+++.||
T Consensus       359 ~--~d~tL~sls~~C~~lr~lslshc---e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le----~l~~c~~Le  429 (483)
T KOG4341|consen  359 I--TDGTLASLSRNCPRLRVLSLSHC---ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE----HLSICRNLE  429 (483)
T ss_pred             e--hhhhHhhhccCCchhccCChhhh---hhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH----HHhhCcccc
Confidence            2  33368899999999999999632   1223343322   268899999999999987743 333    345889999


Q ss_pred             cEEEecCCCchhhHHHHHH
Q 014141          392 KMIIKPSGSRKRTTLKNST  410 (430)
Q Consensus       392 ~m~i~~~~~~~~~~~~~~~  410 (430)
                      ++.++...+...+.+...+
T Consensus       430 ri~l~~~q~vtk~~i~~~~  448 (483)
T KOG4341|consen  430 RIELIDCQDVTKEAISRFA  448 (483)
T ss_pred             eeeeechhhhhhhhhHHHH
Confidence            9887766655554444333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=2.7e-16  Score=139.38  Aligned_cols=275  Identities=19%  Similarity=0.260  Sum_probs=153.3

Q ss_pred             cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh------cccCceeeecCCccccCCCCchhHhHHHHHHHHHHhh
Q 014141           20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL------WTFTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLEL   93 (430)
Q Consensus        20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~   93 (430)
                      +-.|+.|||||+..|||.|+.+|+.+.+.|||||+++      |..   +++... .+.       .+....++.     
T Consensus        95 gv~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~---lDl~~r-~i~-------p~~l~~l~~-----  158 (419)
T KOG2120|consen   95 GVSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQT---LDLTGR-NIH-------PDVLGRLLS-----  158 (419)
T ss_pred             CCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceee---eccCCC-ccC-------hhHHHHHHh-----
Confidence            3448999999999999999999999999999999975      554   444444 222       122222221     


Q ss_pred             cCCCceeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEee
Q 014141           94 HRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCA  173 (430)
Q Consensus        94 ~~~~~l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~  173 (430)
                       +|  |.-|++.=.+.  +...+..-. ...+.+++.+++....-..+.-.             .-+.+|..||.|+|.+
T Consensus       159 -rg--V~v~Rlar~~~--~~prlae~~-~~frsRlq~lDLS~s~it~stl~-------------~iLs~C~kLk~lSlEg  219 (419)
T KOG2120|consen  159 -RG--VIVFRLARSFM--DQPRLAEHF-SPFRSRLQHLDLSNSVITVSTLH-------------GILSQCSKLKNLSLEG  219 (419)
T ss_pred             -CC--eEEEEcchhhh--cCchhhhhh-hhhhhhhHHhhcchhheeHHHHH-------------HHHHHHHhhhhccccc
Confidence             12  55555421111  111121111 11223567676654421111000             0113678899999999


Q ss_pred             EEEcchhHHHHhhcCCcccceeeccCCCCceeeE---ecCCCCcceEEEeecCCccEE-----EEeCCceeEEEEeccee
Q 014141          174 VNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV---VGSSIPLKCLDIQFCYSIKEI-----EISAPNLLSFKYIGQDI  245 (430)
Q Consensus       174 ~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i---~~~~~~L~~L~l~~c~~l~~i-----~i~~P~L~~L~~~~~~~  245 (430)
                      .+++|+... -++.-.+|++|+|..|.|++.-.+   -.+|.+|..|.+.+|....+.     .-..|.|..|++.|+.-
T Consensus       220 ~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr  298 (419)
T KOG2120|consen  220 LRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR  298 (419)
T ss_pred             cccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh
Confidence            888766433 356677899999999988865322   247788999999988743331     22357888888887633


Q ss_pred             ee-------ecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccc--cCCCCccceEEEEEeecC
Q 014141          246 NL-------HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREFPKLMNLNISFTAAN  316 (430)
Q Consensus       246 ~~-------~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l--~~~~~~L~~L~l~~~~~~  316 (430)
                      .+       ....+|++.++.++.+....  ...+..+..++-|++|.++.|..+....+  ....|.|++|++..+.  
T Consensus       299 nl~~sh~~tL~~rcp~l~~LDLSD~v~l~--~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v--  374 (419)
T KOG2120|consen  299 NLQKSHLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV--  374 (419)
T ss_pred             hhhhhHHHHHHHhCCceeeeccccccccC--chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc--
Confidence            21       12346666666655332221  12224445566666666655541111111  1115566666654431  


Q ss_pred             ccchhhHHHHHhhCCCceEE
Q 014141          317 QETLLGLSFIMKACPFLEKL  336 (430)
Q Consensus       317 ~~~~~~l~~lL~~~p~L~~L  336 (430)
                        ....+.-+.+.||+|+.-
T Consensus       375 --sdt~mel~~e~~~~lkin  392 (419)
T KOG2120|consen  375 --SDTTMELLKEMLSHLKIN  392 (419)
T ss_pred             --CchHHHHHHHhCcccccc
Confidence              112244455666665443

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.16  E-value=1e-10  Score=85.05  Aligned_cols=69  Identities=23%  Similarity=0.354  Sum_probs=59.2

Q ss_pred             cCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEecCCCchh--hHHHHHHhhccccCCCccEEEE
Q 014141          356 KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPSGSRKR--TTLKNSTNMLKAKLPRGVKLTV  425 (430)
Q Consensus       356 ~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~~~~~--~~~~~~~~~~~~~~s~~~~i~~  425 (430)
                      .|..++|+.|+|.||.|..+|+++++|+++||+.||+|+|.......+  ..+...+..+ +|+|+.|+|.|
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~~~~~i~~~L~~~-~~aS~~c~i~~   71 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSDDDEKLEILKELLSL-PRASSSCQVQF   71 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCCccHHHHHHHHHHhC-cCCCCceEEEe
Confidence            367789999999999999999999999999999999999998764432  3344666678 99999999987

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=98.85  E-value=2.7e-09  Score=71.25  Aligned_cols=43  Identities=44%  Similarity=0.705  Sum_probs=40.8

Q ss_pred             ccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEec
Q 014141          355 SKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKP  397 (430)
Q Consensus       355 ~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~  397 (430)
                      +.|..+||+.|+|.||.|..+|+++++|+++||++||+|+|..
T Consensus         9 p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~   51 (51)
T PF08387_consen    9 PECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF   51 (51)
T ss_pred             ccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence            4899999999999999999999999999999999999999963

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.77  E-value=5.2e-09  Score=68.96  Aligned_cols=35  Identities=34%  Similarity=0.640  Sum_probs=31.0

Q ss_pred             CCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 014141           23 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW   57 (430)
Q Consensus        23 is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw   57 (430)
                      |+.||+||+.+||++|+.+|.++++.|||+|+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999864

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.34  E-value=1.6e-08  Score=94.41  Aligned_cols=245  Identities=15%  Similarity=0.153  Sum_probs=124.9

Q ss_pred             CccHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEeeE-EEcchhHHHHhhcCCcc
Q 014141          113 KCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAV-NVTGEVVEFFIHNCPLL  191 (430)
Q Consensus       113 ~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~L  191 (430)
                      .+.|...++.+. ..+++|.+..+........  -          ....++|++++|.+.+| .+++..+..+-..|+.|
T Consensus       126 g~VV~~~~~Rcg-g~lk~LSlrG~r~v~~ssl--r----------t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l  192 (483)
T KOG4341|consen  126 GGVVENMISRCG-GFLKELSLRGCRAVGDSSL--R----------TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKL  192 (483)
T ss_pred             CcceehHhhhhc-cccccccccccccCCcchh--h----------HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchh
Confidence            444555554444 3577777766644432110  0          01246788888888888 56677788877888888


Q ss_pred             cceeeccCCCCceee---EecCCCCcceEEEeecCCccE-----EEEeCCceeEEEEecceeeeecCCCCCceEEEEEee
Q 014141          192 ENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKE-----IEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVT  263 (430)
Q Consensus       192 e~L~L~~~~~~~~~~---i~~~~~~L~~L~l~~c~~l~~-----i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~  263 (430)
                      +.|.+..|..+++..   +...|++|+.|.+++|+....     +.-.+-+++.+..+|+.-.                 
T Consensus       193 ~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-----------------  255 (483)
T KOG4341|consen  193 RHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-----------------  255 (483)
T ss_pred             hhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-----------------
Confidence            888888888776532   334678888888888874333     1111222333333332110                 


Q ss_pred             cCcchhhHHHHhhccCCCceEEEEecceeeeccc---ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          264 PMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       264 ~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                          ..+-+......+.-+..+++..+.++.+..   +...+..|..|..+.  +.......+..+-++|++|+.|.++.
T Consensus       256 ----~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~--~t~~~d~~l~aLg~~~~~L~~l~l~~  329 (483)
T KOG4341|consen  256 ----ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS--CTDITDEVLWALGQHCHNLQVLELSG  329 (483)
T ss_pred             ----cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC--CCCCchHHHHHHhcCCCceEEEeccc
Confidence                000011122222333333332332222111   111122233333322  33334445666777778888877766


Q ss_pred             eccccccccCccccccCcCCCccEEEEeeee-cChhhHHHHHHHHhcccccccEEEecCC
Q 014141          341 WNNGRRIGKKRHQISKHSHQHLKLVELQGFN-GREIDFELAFYVFENATMLEKMIIKPSG  399 (430)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~-g~~~e~~l~~~ll~~a~~Le~m~i~~~~  399 (430)
                      +..   ..+.+.....-.+.+|+.+.+.+.. |.+.  . +..+..||+.|+++.++...
T Consensus       330 c~~---fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t-L~sls~~C~~lr~lslshce  383 (483)
T KOG4341|consen  330 CQQ---FSDRGFTMLGRNCPHLERLDLEECGLITDG--T-LASLSRNCPRLRVLSLSHCE  383 (483)
T ss_pred             cch---hhhhhhhhhhcCChhhhhhcccccceehhh--h-HhhhccCCchhccCChhhhh
Confidence            532   2333332223445567766666543 4443  2 22355677777777776443

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.33  E-value=1.7e-07  Score=62.01  Aligned_cols=38  Identities=39%  Similarity=0.593  Sum_probs=31.7

Q ss_pred             CCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhcccC
Q 014141           23 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFT   60 (430)
Q Consensus        23 is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~~~   60 (430)
                      |++||+|++.+|+++|+.+|.++++.|||+|+.+....
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            67899999999999999999999999999999976543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.28  E-value=1.1e-06  Score=55.91  Aligned_cols=33  Identities=39%  Similarity=0.638  Sum_probs=31.3

Q ss_pred             CCHHHHHHHHhcCChHHHHHHHHhhhhhhhhcc
Q 014141           26 FPDDILIHIISGLTLKEAARTSVLSSRWKYLWT   58 (430)
Q Consensus        26 LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~   58 (430)
                      ||+|++.+|+++|+.+|..+++.|||+|+.+..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999999754

>PLN03210 Resistant to P

Probab=98.17  E-value=3.2e-06  Score=93.88  Aligned_cols=64  Identities=16%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             hccCCCceEEEEecceeeecccccCC--CCccceEEEEEeecC----------------ccchhhHHHHHhhCCCceEEE
Q 014141          276 VSYLPQLKTLELDGCNEVFAQFSQRE--FPKLMNLNISFTAAN----------------QETLLGLSFIMKACPFLEKLV  337 (430)
Q Consensus       276 ~~~~~~l~~L~l~~~~~~~~~~l~~~--~~~L~~L~l~~~~~~----------------~~~~~~l~~lL~~~p~L~~L~  337 (430)
                      +.++++|+.|.+..+..+.  .+|..  +++|++|+++.+...                ...+..++.-+..+++|+.|.
T Consensus       798 i~~L~~L~~L~Ls~C~~L~--~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~  875 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLE--TLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLD  875 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcC--eeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence            4567778888887654221  12221  444444444322100                012223444556677777777


Q ss_pred             EEEe
Q 014141          338 LQIW  341 (430)
Q Consensus       338 l~~~  341 (430)
                      +..+
T Consensus       876 L~~C  879 (1153)
T PLN03210        876 MNGC  879 (1153)
T ss_pred             CCCC
Confidence            7553

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.02  E-value=5.9e-06  Score=90.83  Aligned_cols=215  Identities=18%  Similarity=0.088  Sum_probs=110.1

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEE---EEeCCceeE
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEI---EISAPNLLS  237 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i---~i~~P~L~~  237 (430)
                      ++++|++|+|++..+.+.. .  ....++|+.|.|.++.....+. .-..+++|+.|++.++.-...+   --..++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence            5667777777666554321 0  1235667777776664321111 1123466777777665421111   123466777


Q ss_pred             EEEeccee----eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccceEEE
Q 014141          238 FKYIGQDI----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLNI  310 (430)
Q Consensus       238 L~~~~~~~----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L~l  310 (430)
                      |++.++..    +-.++.+++|+.+.+..+.....   +..-+..+++|+.|++..+. +. ..+|..   +++|++|++
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L  267 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE---IPYEIGGLTSLNHLDLVYNN-LT-GPIPSSLGNLKNLQYLFL  267 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCc---CChhHhcCCCCCEEECcCce-ec-cccChhHhCCCCCCEEEC
Confidence            77765532    22345566677776664433211   11334567777777776665 22 122322   556666666


Q ss_pred             EEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEeeeecChhhHHHHHHHHhcccc
Q 014141          311 SFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATM  389 (430)
Q Consensus       311 ~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~  389 (430)
                      ....-.    ..+..-+...++|++|++....-      .+..+. -..+.+|+.+.+.+-.-..    .....+.+.+.
T Consensus       268 ~~n~l~----~~~p~~l~~l~~L~~L~Ls~n~l------~~~~p~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~  333 (968)
T PLN00113        268 YQNKLS----GPIPPSIFSLQKLISLDLSDNSL------SGEIPELVIQLQNLEILHLFSNNFTG----KIPVALTSLPR  333 (968)
T ss_pred             cCCeee----ccCchhHhhccCcCEEECcCCee------ccCCChhHcCCCCCcEEECCCCccCC----cCChhHhcCCC
Confidence            432111    11233455677788887753211      111122 2345778888886532111    11123457788


Q ss_pred             cccEEEecC
Q 014141          390 LEKMIIKPS  398 (430)
Q Consensus       390 Le~m~i~~~  398 (430)
                      |+.+.+...
T Consensus       334 L~~L~L~~n  342 (968)
T PLN00113        334 LQVLQLWSN  342 (968)
T ss_pred             CCEEECcCC
Confidence            999888654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.95  E-value=1e-05  Score=76.96  Aligned_cols=218  Identities=15%  Similarity=0.030  Sum_probs=101.0

Q ss_pred             CCCCCceEEEeeEEEc--chh---HHHHhhcCCcccceeeccCCCCcee-----eEecCCCCcceEEEeecCCccEEEEe
Q 014141          162 GIKSLRSLTLCAVNVT--GEV---VEFFIHNCPLLENLRITQSPDLLSL-----KVVGSSIPLKCLDIQFCYSIKEIEIS  231 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~--~~~---l~~ll~~cp~Le~L~L~~~~~~~~~-----~i~~~~~~L~~L~l~~c~~l~~i~i~  231 (430)
                      .+++|++|.+.+..+.  ...   +...+..++.|+.|.|.+|......     .+... ++|++|.+.+|.. ..-...
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~-~~~~~~  126 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGL-GDRGLR  126 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCcc-chHHHH
Confidence            5567777777777655  222   2334455777777777776532110     01111 3366666655541 100000


Q ss_pred             CCceeEEEEecceeeeecCCC-CCceEEEEEeecCcc-hhhHHHHhhccCCCceEEEEecceeeeccc---ccC---CCC
Q 014141          232 APNLLSFKYIGQDINLHVGSL-PQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQR---EFP  303 (430)
Q Consensus       232 ~P~L~~L~~~~~~~~~~~~~~-~~L~~~~i~~~~~~~-~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~---~~~  303 (430)
                                  ...-.+... ++|+++.+..+.... ....+...+..+++|+.|++..+. +....   ++.   .++
T Consensus       127 ------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~  193 (319)
T cd00116         127 ------------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANC  193 (319)
T ss_pred             ------------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCC
Confidence                        000011223 455555555433221 111222445556667777776654 32111   111   145


Q ss_pred             ccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCcccc--ccC--cCCCccEEEEeeeecC-hhhHH
Q 014141          304 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI--SKH--SHQHLKLVELQGFNGR-EIDFE  378 (430)
Q Consensus       304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~--~~~--~~~~L~~v~i~~~~g~-~~e~~  378 (430)
                      +|++|++..+.........+...+..+|+|+.|++....-    .+.+...  ..+  ....|+.+.+.+..-+ .....
T Consensus       194 ~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l----~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~  269 (319)
T cd00116         194 NLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL----TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKD  269 (319)
T ss_pred             CCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcC----chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHH
Confidence            7777777554322233334555666777777777754311    1111100  011  2356777777665422 22233


Q ss_pred             HHHHHHhcccccccEEEecCC
Q 014141          379 LAFYVFENATMLEKMIIKPSG  399 (430)
Q Consensus       379 l~~~ll~~a~~Le~m~i~~~~  399 (430)
                      +++. +.+.+.|+.+.+....
T Consensus       270 l~~~-~~~~~~L~~l~l~~N~  289 (319)
T cd00116         270 LAEV-LAEKESLLELDLRGNK  289 (319)
T ss_pred             HHHH-HhcCCCccEEECCCCC
Confidence            4443 3333677776665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=4.4e-07  Score=81.50  Aligned_cols=184  Identities=16%  Similarity=0.193  Sum_probs=104.6

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe-cCCCCcceEEEeecCCccEEEEeCCceeEEEEec
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV-GSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG  242 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~-~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~  242 (430)
                      .+|++|+|+...++...+..+++.|..|+.|.|.+..--+.+.+. +....|+.|.+..|.++.+...            
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~------------  252 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL------------  252 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH------------
Confidence            579999999999999999999999999999999998654443222 2337889999988875443221            


Q ss_pred             ceeeeecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEeccee-ee---cccccCCCCccceEEEEEeecCc
Q 014141          243 QDINLHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNE-VF---AQFSQREFPKLMNLNISFTAANQ  317 (430)
Q Consensus       243 ~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~-~~---~~~l~~~~~~L~~L~l~~~~~~~  317 (430)
                         ...+.++..|.++++..+......  +. -+.+.-+++..|.+.++.. +.   ...+...+|||.+|+|+-+..-.
T Consensus       253 ---~ll~~scs~L~~LNlsWc~l~~~~--Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  253 ---QLLLSSCSRLDELNLSWCFLFTEK--VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             ---HHHHHhhhhHhhcCchHhhccchh--hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence               122334444555554432211100  11 1122333556666655431 11   11223337777777775543221


Q ss_pred             cchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeee
Q 014141          318 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFN  371 (430)
Q Consensus       318 ~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~  371 (430)
                      .   ++...+..+|.|++|.+.-+..    -.......-...++|..+.+.|+-
T Consensus       328 ~---~~~~~~~kf~~L~~lSlsRCY~----i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  328 N---DCFQEFFKFNYLQHLSLSRCYD----IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             c---hHHHHHHhcchheeeehhhhcC----CChHHeeeeccCcceEEEEecccc
Confidence            1   4556677778888887754321    111111112344667777776653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.81  E-value=5.7e-05  Score=69.64  Aligned_cols=197  Identities=19%  Similarity=0.218  Sum_probs=121.3

Q ss_pred             CCCCCCCceEEEeeEEEcc---hhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecCCccEEEEeCC
Q 014141          160 LSGIKSLRSLTLCAVNVTG---EVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYSIKEIEISAP  233 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~---~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~~l~~i~i~~P  233 (430)
                      +.++|+|++|+|+...|..   ..++.++++|..|++|.|.+| |+...   .+.   .-|.+|..      .+-.-+.|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~---~al~~l~~------~kk~~~~~  157 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLG---RALFELAV------NKKAASKP  157 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHH---HHHHHHHH------HhccCCCc
Confidence            3467899999999998865   458899999999999999999 33211   111   11222221      11123567


Q ss_pred             ceeEEEEeccee--------eeecCCCCCceEEEEEeecCcch-hhHHHHhhccCCCceEEEEecceeee------cccc
Q 014141          234 NLLSFKYIGQDI--------NLHVGSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLELDGCNEVF------AQFS  298 (430)
Q Consensus       234 ~L~~L~~~~~~~--------~~~~~~~~~L~~~~i~~~~~~~~-~~~~~~l~~~~~~l~~L~l~~~~~~~------~~~l  298 (430)
                      .|+.+.+.....        .-.+...|.|.++++..+..... ..-+..-+..|++|+.|+|+.+. ..      ....
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Laka  236 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKA  236 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHH
Confidence            777777654422        11234567888888886654321 11122556889999999998876 22      1122


Q ss_pred             cCCCCccceEEEEEeecCccchhhHH-HHHhhCCCceEEEEEEeccccccccCccccc-cC--cCCCccEEEEeeee
Q 014141          299 QREFPKLMNLNISFTAANQETLLGLS-FIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KH--SHQHLKLVELQGFN  371 (430)
Q Consensus       299 ~~~~~~L~~L~l~~~~~~~~~~~~l~-~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~--~~~~L~~v~i~~~~  371 (430)
                      .+.+++|+.|.++.+.-.......+. .+-+..|+|+.|.+.+..-    ..++-... .|  ..++|+.+.+.|-+
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI----t~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI----TRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchh----HHHHHHHHHHHHhcchhhHHhcCCccc
Confidence            23378899999988765544444444 4556789999999976421    11111110 11  25678888888754

>PLN03210 Resistant to P

Probab=97.77  E-value=5.2e-05  Score=84.39  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=18.5

Q ss_pred             CccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          303 PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      ++|+.|+|..+.    ....++.-+.++++|+.|+|..+
T Consensus       778 ~sL~~L~Ls~n~----~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        778 PSLTRLFLSDIP----SLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             ccchheeCCCCC----CccccChhhhCCCCCCEEECCCC
Confidence            456666553321    11123344667777777777543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.65  E-value=5.3e-05  Score=83.33  Aligned_cols=174  Identities=17%  Similarity=0.162  Sum_probs=73.4

Q ss_pred             CCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEE---EeC
Q 014141          157 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIE---ISA  232 (430)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~---i~~  232 (430)
                      |..+.++++|++|+|.++.+... +..-+..+++|+.|.|.+|.....+. .-..+++|+.|.+.++.-...+.   -..
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  235 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL  235 (968)
T ss_pred             ChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence            33444555566666655544321 11223455556666665554221110 00123555555555543111110   123


Q ss_pred             CceeEEEEeccee----eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC---CCCcc
Q 014141          233 PNLLSFKYIGQDI----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFPKL  305 (430)
Q Consensus       233 P~L~~L~~~~~~~----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~---~~~~L  305 (430)
                      ++|++|++.++..    +..++++++|+.+.+..+.....   +..-+..+++|+.|++..+. +. ..+|.   .+++|
T Consensus       236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~n~-l~-~~~p~~~~~l~~L  310 (968)
T PLN00113        236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP---IPPSIFSLQKLISLDLSDNS-LS-GEIPELVIQLQNL  310 (968)
T ss_pred             CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc---CchhHhhccCcCEEECcCCe-ec-cCCChhHcCCCCC
Confidence            5566666554422    22344555666665553322111   11222345556666665443 21 11221   14455


Q ss_pred             ceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          306 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       306 ~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      +.|++......    ..+...+..+|+|+.|.+..
T Consensus       311 ~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~  341 (968)
T PLN00113        311 EILHLFSNNFT----GKIPVALTSLPRLQVLQLWS  341 (968)
T ss_pred             cEEECCCCccC----CcCChhHhcCCCCCEEECcC
Confidence            55554322110    01223345556666666643

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.64  E-value=7.4e-05  Score=70.98  Aligned_cols=218  Identities=17%  Similarity=0.116  Sum_probs=118.2

Q ss_pred             CCCCCceEEEeeEEEcchh---HHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEE
Q 014141          162 GIKSLRSLTLCAVNVTGEV---VEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF  238 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L  238 (430)
                      .+++|+.|.+.++.+++..   +...+...|.|+.|.+.++..-.   +.   ..+..+       ...+ ...++|+.|
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~---~~---~~~~~~-------~~~l-~~~~~L~~L   86 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR---IP---RGLQSL-------LQGL-TKGCGLQEL   86 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC---cc---hHHHHH-------HHHH-HhcCceeEE
Confidence            3455777777777665432   34445556666666666543210   00   000000       0000 125688888


Q ss_pred             EEecceee----eecCCC---CCceEEEEEeecCcc-hhhHHHHhhccC-CCceEEEEecceeeeccc---cc---CCCC
Q 014141          239 KYIGQDIN----LHVGSL---PQLVDVVFHVTPMVQ-KMHCIGSIVSYL-PQLKTLELDGCNEVFAQF---SQ---REFP  303 (430)
Q Consensus       239 ~~~~~~~~----~~~~~~---~~L~~~~i~~~~~~~-~~~~~~~l~~~~-~~l~~L~l~~~~~~~~~~---l~---~~~~  303 (430)
                      .+.+....    ..+...   ++|+.+.+..+.... ....+...+..+ ++|+.|.+..+. +....   +.   ..+.
T Consensus        87 ~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~  165 (319)
T cd00116          87 DLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANR  165 (319)
T ss_pred             EccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCC
Confidence            88776432    111122   559999988655432 222333445566 899999998876 43211   11   1256


Q ss_pred             ccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCc--cccc-cCcCCCccEEEEeeeecCh-hhHHH
Q 014141          304 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKR--HQIS-KHSHQHLKLVELQGFNGRE-IDFEL  379 (430)
Q Consensus       304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~--~~~~-~~~~~~L~~v~i~~~~g~~-~e~~l  379 (430)
                      +|++|++..+.-.......+...+..+++|+.|++....-    .+.+  .... ...+++|+.+.+.+..-.+ .-..+
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i----~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l  241 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL----TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL  241 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc----ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence            7888888654322222223445566678999999965421    1111  1111 2345789999998854332 22344


Q ss_pred             HHHHHhcccccccEEEecC
Q 014141          380 AFYVFENATMLEKMIIKPS  398 (430)
Q Consensus       380 ~~~ll~~a~~Le~m~i~~~  398 (430)
                      +..+..+.+.|+++.+...
T Consensus       242 ~~~~~~~~~~L~~L~l~~n  260 (319)
T cd00116         242 ASALLSPNISLLTLSLSCN  260 (319)
T ss_pred             HHHHhccCCCceEEEccCC
Confidence            4444445689999998765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.32  E-value=0.00032  Score=39.27  Aligned_cols=25  Identities=36%  Similarity=0.638  Sum_probs=22.8

Q ss_pred             CCceEEEeeEEEcch-hHHHHhhcCC
Q 014141          165 SLRSLTLCAVNVTGE-VVEFFIHNCP  189 (430)
Q Consensus       165 ~L~~L~L~~~~~~~~-~l~~ll~~cp  189 (430)
                      +||+|+|.++.+.++ .++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999876 6999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.29  E-value=0.00012  Score=76.04  Aligned_cols=131  Identities=19%  Similarity=0.191  Sum_probs=80.3

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEE
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY  240 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~  240 (430)
                      .-||+|++|.+.+..+..+++..+..++|+|..|++.++. ++.+.--+.+++|+.|.+.+...                
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L~mrnLe~----------------  207 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVLSMRNLEF----------------  207 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHHhccCCCC----------------
Confidence            3689999999999999988899999999999999999883 33332222335555555443320                


Q ss_pred             ecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeee-----cccccC--CCCccceEEEEEe
Q 014141          241 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVF-----AQFSQR--EFPKLMNLNISFT  313 (430)
Q Consensus       241 ~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~-----~~~l~~--~~~~L~~L~l~~~  313 (430)
                               .+.                 ..+.. +-++.+|+.|+++......     ...+.+  .+|+|+.|+.+.+
T Consensus       208 ---------e~~-----------------~~l~~-LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  208 ---------ESY-----------------QDLID-LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             ---------Cch-----------------hhHHH-HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence                     000                 00101 2235556666655443100     011111  1778888887643


Q ss_pred             ecCccchhhHHHHHhhCCCceEEEE
Q 014141          314 AANQETLLGLSFIMKACPFLEKLVL  338 (430)
Q Consensus       314 ~~~~~~~~~l~~lL~~~p~L~~L~l  338 (430)
                      .   .+...+..+++.-|+|+.+.+
T Consensus       261 d---i~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  261 D---INEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             c---hhHHHHHHHHHhCccHhhhhh
Confidence            2   344557788999999988765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.12  E-value=5.8e-05  Score=76.01  Aligned_cols=41  Identities=17%  Similarity=0.315  Sum_probs=33.7

Q ss_pred             cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhcccC
Q 014141           20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFT   60 (430)
Q Consensus        20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~~~   60 (430)
                      .+.....|++....+....+..+...+..++++|.......
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (482)
T KOG1947|consen   42 LRFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGSL   82 (482)
T ss_pred             eeeeeccccchhhhcccccccccccccchhhhhhhhhhhhh
Confidence            35567789999999999999999888999999998865543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=5.8e-05  Score=71.59  Aligned_cols=174  Identities=21%  Similarity=0.178  Sum_probs=111.5

Q ss_pred             CCCCCCceEEEeeEEEcc-hhHHHHhhcCCcccceeeccCCCCc--eeeEecCCCCcceEEEeecCC----ccEEEEeCC
Q 014141          161 SGIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDLL--SLKVVGSSIPLKCLDIQFCYS----IKEIEISAP  233 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~~--~~~i~~~~~~L~~L~l~~c~~----l~~i~i~~P  233 (430)
                      ..||+++.|+|++.-++. ..+..++...|+||.|+|......-  .=......+.||.|.+..|+-    ...+....|
T Consensus       143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            478999999999987765 5678888999999999998753211  101112448899999999982    234566789


Q ss_pred             ceeEEEEecce-ee---eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC--------C
Q 014141          234 NLLSFKYIGQD-IN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR--------E  301 (430)
Q Consensus       234 ~L~~L~~~~~~-~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~--------~  301 (430)
                      +|+.|.+.+.. .-   ........|+++.++.++.....  .......+++|+.|.+..+. +.....|+        .
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~--~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD--QGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT  299 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc--cccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence            99999987763 11   12223456777877754432111  11445788888888887766 43322222        2


Q ss_pred             CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          302 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      |++|+.|.+.......+.  + ..=++..++|+.|.+..
T Consensus       300 f~kL~~L~i~~N~I~~w~--s-l~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWR--S-LNHLRTLENLKHLRITL  335 (505)
T ss_pred             cccceeeecccCcccccc--c-cchhhccchhhhhhccc
Confidence            889999988554322222  1 23345567777776644

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.06  E-value=0.00018  Score=70.73  Aligned_cols=209  Identities=18%  Similarity=0.181  Sum_probs=100.1

Q ss_pred             CCCCCCCCceEEEeeEEEcch-hHHHHhhcCCcccceeeccCC-------------CCceeeEec------------CCC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGE-VVEFFIHNCPLLENLRITQSP-------------DLLSLKVVG------------SSI  212 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~-------------~~~~~~i~~------------~~~  212 (430)
                      .|..+|+|+.|.|...++..- .+  -+.+.|.|+.|.|....             +++.+++..            .+.
T Consensus       216 ~Fk~L~~L~~LdLnrN~irive~l--tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt  293 (873)
T KOG4194|consen  216 SFKRLPKLESLDLNRNRIRIVEGL--TFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT  293 (873)
T ss_pred             Hhhhcchhhhhhccccceeeehhh--hhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc
Confidence            444577777777776655431 11  14566677777665431             112111111            112


Q ss_pred             CcceEEEeecCCccEEEEe----CCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCce
Q 014141          213 PLKCLDIQFCYSIKEIEIS----APNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLK  283 (430)
Q Consensus       213 ~L~~L~l~~c~~l~~i~i~----~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~  283 (430)
                      .|+.|.++... +..|.++    +|+|+.|.+....+.    -++.....|+++++.-+    .++++- .-+.++++|+
T Consensus       294 ~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N----si~~l~e~af~~lssL~  368 (873)
T KOG4194|consen  294 SLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN----SIDHLAEGAFVGLSSLH  368 (873)
T ss_pred             hhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc----chHHHHhhHHHHhhhhh
Confidence            23333333221 3334433    456666665544321    12223344555555422    223333 4456777888


Q ss_pred             EEEEecce-e--eeccc-ccCCCCccceEEEEEeecCccchhh-HHHHHhhCCCceEEEEEEeccccccccCccccccCc
Q 014141          284 TLELDGCN-E--VFAQF-SQREFPKLMNLNISFTAANQETLLG-LSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHS  358 (430)
Q Consensus       284 ~L~l~~~~-~--~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~-l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~  358 (430)
                      .|+|+.+. .  +++.. ....++.|+.|.+...     ...+ -..-+...++||+|++....   +   ....+.++.
T Consensus       369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-----qlk~I~krAfsgl~~LE~LdL~~Na---i---aSIq~nAFe  437 (873)
T KOG4194|consen  369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-----QLKSIPKRAFSGLEALEHLDLGDNA---I---ASIQPNAFE  437 (873)
T ss_pred             hhcCcCCeEEEEEecchhhhccchhhhheeecCc-----eeeecchhhhccCcccceecCCCCc---c---eeecccccc
Confidence            88887665 0  12211 1122667777776432     1111 12455677888888874321   0   111122444


Q ss_pred             CCCccEEEEee--eecChhhHHHHHHHHh
Q 014141          359 HQHLKLVELQG--FNGREIDFELAFYVFE  385 (430)
Q Consensus       359 ~~~L~~v~i~~--~~g~~~e~~l~~~ll~  385 (430)
                      .-+|+++.|..  |-.+++-..++..+.+
T Consensus       438 ~m~Lk~Lv~nSssflCDCql~Wl~qWl~~  466 (873)
T KOG4194|consen  438 PMELKELVMNSSSFLCDCQLKWLAQWLYR  466 (873)
T ss_pred             cchhhhhhhcccceEEeccHHHHHHHHHh
Confidence            44777777754  4455555556665554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.03  E-value=0.00017  Score=61.62  Aligned_cols=122  Identities=25%  Similarity=0.272  Sum_probs=35.6

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--E--eCCceeE
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--I--SAPNLLS  237 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i--~~P~L~~  237 (430)
                      +.-+++.|+|.+..|+.  ++.+-..+..|+.|.+.++.- +.+.--..+++|+.|.+++-. +..+.  +  ..|+|+.
T Consensus        17 n~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred             ccccccccccccccccc--ccchhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence            44567888888887743  333333567888888887742 222211234667777776544 33331  1  2477777


Q ss_pred             EEEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEE
Q 014141          238 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLEL  287 (430)
Q Consensus       238 L~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l  287 (430)
                      |.+.+..+.     ..+..+|+|+.+.+..++......|-..++..+|+|+.|+-
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            776655332     12334555666655555544433443344555555555553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=9.9e-05  Score=70.04  Aligned_cols=177  Identities=18%  Similarity=0.188  Sum_probs=116.4

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC--CC-ceeeEecCCCCcceEEEeec----CCccEEEEeCC
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP--DL-LSLKVVGSSIPLKCLDIQFC----YSIKEIEISAP  233 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~--~~-~~~~i~~~~~~L~~L~l~~c----~~l~~i~i~~P  233 (430)
                      .++..|+...|.++.+.+...+...-.||++++|+|+..-  .+ .-..|...+|+|+.|.++.-    +.-...+...+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            3678899999999988766555777889999999998652  22 23456667799999999753    22233455778


Q ss_pred             ceeEEEEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC--CCCccc
Q 014141          234 NLLSFKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR--EFPKLM  306 (430)
Q Consensus       234 ~L~~L~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~--~~~~L~  306 (430)
                      +|+.|.+.++.+.     .....+|++..+.+..+...  .... .-...+..|+.|+|+.+.-+.-..++.  .|++|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--~~~~-~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII--LIKA-TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc--ceec-chhhhhhHHhhccccCCcccccccccccccccchh
Confidence            9999999888654     35567899998888755311  0000 001234468888888776211121222  288999


Q ss_pred             eEEEEEeecCccchh--hHHHHHhhCCCceEEEEEE
Q 014141          307 NLNISFTAANQETLL--GLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       307 ~L~l~~~~~~~~~~~--~l~~lL~~~p~L~~L~l~~  340 (430)
                      .|.+..+.-......  ...+.....|+|+.|.+.-
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence            998866543332222  1345677889999999854

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.73  E-value=0.00068  Score=70.60  Aligned_cols=201  Identities=17%  Similarity=0.193  Sum_probs=103.0

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee-------eEec---------CCCCcceEEEeecCC---
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-------KVVG---------SSIPLKCLDIQFCYS---  224 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-------~i~~---------~~~~L~~L~l~~c~~---  224 (430)
                      =+|++.+|.+.......++.+...+  |++|.|.++......       .|..         +-.+|++|++.+-..   
T Consensus        60 f~ltki~l~~~~~~~~~~~~l~~~~--L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~  137 (699)
T KOG3665|consen   60 FNLTKIDLKNVTLQHQTLEMLRKQD--LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSN  137 (699)
T ss_pred             heeEEeeccceecchhHHHHHhhcc--ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhc
Confidence            4566666666666555555433333  999999987544321       1100         124555665554221   


Q ss_pred             --ccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCC
Q 014141          225 --IKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREF  302 (430)
Q Consensus       225 --l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~  302 (430)
                        ...+.--.|+|++|.+.|...                    .  .+.+..+..++|+|..|+++++. +..-.--..+
T Consensus       138 ~W~~kig~~LPsL~sL~i~~~~~--------------------~--~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~L  194 (699)
T KOG3665|consen  138 GWPKKIGTMLPSLRSLVISGRQF--------------------D--NDDFSQLCASFPNLRSLDISGTN-ISNLSGISRL  194 (699)
T ss_pred             cHHHHHhhhCcccceEEecCcee--------------------c--chhHHHHhhccCccceeecCCCC-ccCcHHHhcc
Confidence              122333345555555444322                    1  12244777888889999888877 3322111124


Q ss_pred             CccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc--cCcCCCccEEEEeeeecChhhHHHH
Q 014141          303 PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQGFNGREIDFELA  380 (430)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~g~~~e~~l~  380 (430)
                      .||+.|.+..-..  .....+..++ +..+|+.|+|+.......   ......  +|..- |.++++.+++|++-.-+++
T Consensus       195 knLq~L~mrnLe~--e~~~~l~~LF-~L~~L~vLDIS~~~~~~~---~~ii~qYlec~~~-LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  195 KNLQVLSMRNLEF--ESYQDLIDLF-NLKKLRVLDISRDKNNDD---TKIIEQYLECGMV-LPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             ccHHHHhccCCCC--CchhhHHHHh-cccCCCeeeccccccccc---hHHHHHHHHhccc-CccccEEecCCcchhHHHH
Confidence            4454444321110  1122233333 367888888876543211   101111  34322 3344444555787777788


Q ss_pred             HHHHhcccccccEEEe
Q 014141          381 FYVFENATMLEKMIIK  396 (430)
Q Consensus       381 ~~ll~~a~~Le~m~i~  396 (430)
                      +.++..=+.|+.+.+.
T Consensus       268 e~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  268 EELLNSHPNLQQIAAL  283 (699)
T ss_pred             HHHHHhCccHhhhhhh
Confidence            8888777777777644

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.66  E-value=0.00059  Score=63.14  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=23.8

Q ss_pred             CCCCCceEEEeeEEEcch---hHHHHhhcCCcccceeeccC
Q 014141          162 GIKSLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~  199 (430)
                      .+.+++.++|++-.|..+   .+...+++-++|++-++...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~   68 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM   68 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh
Confidence            346677777777777543   35566666666666666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.61  E-value=0.0012  Score=65.15  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=25.1

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (430)
                      .-..+|++|.|.+..|+.-.-+ =++..|.||.|+|...
T Consensus       122 ~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen  122 HESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDLSRN  159 (873)
T ss_pred             ccccceeEEeeeccccccccHH-HHHhHhhhhhhhhhhc
Confidence            3446699999998876542111 2456788888888754

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.31  E-value=0.00034  Score=70.39  Aligned_cols=63  Identities=25%  Similarity=0.384  Sum_probs=38.0

Q ss_pred             CCCCCceEEEeeEE-EcchhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecCC
Q 014141          162 GIKSLRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYS  224 (430)
Q Consensus       162 ~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~~  224 (430)
                      .+++|+.|.|.++. ++|..+..+...||+||.|.+.+|..+++.   .+...|+.|++|.+..|..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            44666777777665 666666666666777777776666654332   2233456666666666653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.95  E-value=0.0046  Score=52.93  Aligned_cols=129  Identities=20%  Similarity=0.185  Sum_probs=36.1

Q ss_pred             cCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeecC
Q 014141          187 NCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPM  265 (430)
Q Consensus       187 ~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~~  265 (430)
                      ++-.+++|.|.++.- +.+ .+...+.+|+.|.++++. +..++                  .+..+++|+.+.++.+..
T Consensus        17 n~~~~~~L~L~~n~I-~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~------------------~l~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen   17 NPVKLRELNLRGNQI-STIENLGATLDKLEVLDLSNNQ-ITKLE------------------GLPGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S--T------------------T----TT--EEE--SS--
T ss_pred             ccccccccccccccc-ccccchhhhhcCCCEEECCCCC-Ccccc------------------CccChhhhhhcccCCCCC
Confidence            455678888887742 222 222233566666666554 22211                  112344555555553322


Q ss_pred             cchhhHHH-HhhccCCCceEEEEecceeeec---ccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          266 VQKMHCIG-SIVSYLPQLKTLELDGCNEVFA---QFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       266 ~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      ..    +. .+...+++|+.|.+..+. +..   ...-..+++|+.|++....... ....=..++..+|+|+.|+-+..
T Consensus        77 ~~----i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   77 SS----ISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             -S-----CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEET
T ss_pred             Cc----cccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEc
Confidence            21    11 233456777777776655 322   1111226777777764332111 11123457788899988866543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.66  E-value=0.016  Score=52.92  Aligned_cols=216  Identities=11%  Similarity=0.071  Sum_probs=120.6

Q ss_pred             CCCCCceEEEeeEEEcc-hhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecC----CccEEEEeCCce
Q 014141          162 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCY----SIKEIEISAPNL  235 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~----~l~~i~i~~P~L  235 (430)
                      .+.+++.|+|.+..+++ +.+..++.+.|.|+.|+|....--..+. .+.+..+|+.|.+.+..    .....--+.|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            45888999999998887 6789999999999999998765433332 22455788999887754    112222345666


Q ss_pred             eEEEEecceee-eec-----C-CCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccc---cCCCCcc
Q 014141          236 LSFKYIGQDIN-LHV-----G-SLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS---QREFPKL  305 (430)
Q Consensus       236 ~~L~~~~~~~~-~~~-----~-~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l---~~~~~~L  305 (430)
                      +.|++++.... +..     + -.+.+..++..-+... -+....++...+|++..+-+..++ ++...-   .+.||.+
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~-~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~  226 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ-LWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSL  226 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHH-HHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcc
Confidence            66665544221 000     0 1122333332211111 112233677788899888887776 433222   2226666


Q ss_pred             ceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccccccc-CccccccCcCCCccEEEEeeee------cChhhHH
Q 014141          306 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGK-KRHQISKHSHQHLKLVELQGFN------GREIDFE  378 (430)
Q Consensus       306 ~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~-~~~~~~~~~~~~L~~v~i~~~~------g~~~e~~  378 (430)
                      .-|.|+-..-..+   +-.+-|+.+|.|..|.+.-++   .++. .+..+--...-.|..|++-|-+      -.++|..
T Consensus       227 ~~LnL~~~~idsw---asvD~Ln~f~~l~dlRv~~~P---l~d~l~~~err~llIaRL~~v~vLNGskIss~er~dSEr~  300 (418)
T KOG2982|consen  227 SCLNLGANNIDSW---ASVDALNGFPQLVDLRVSENP---LSDPLRGGERRFLLIARLTKVQVLNGSKISSRERKDSERR  300 (418)
T ss_pred             hhhhhcccccccH---HHHHHHcCCchhheeeccCCc---ccccccCCcceEEEEeeccceEEecCcccchhhhhhhHHH
Confidence            6666644322211   234678889999999885442   2211 1111111223456666665522      1247788


Q ss_pred             HHHHHHh
Q 014141          379 LAFYVFE  385 (430)
Q Consensus       379 l~~~ll~  385 (430)
                      |++|.+.
T Consensus       301 fVRyym~  307 (418)
T KOG2982|consen  301 FVRYYMS  307 (418)
T ss_pred             HHHHHhh
Confidence            8888774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.61  E-value=0.018  Score=60.63  Aligned_cols=29  Identities=14%  Similarity=0.023  Sum_probs=16.4

Q ss_pred             CCceEEEEecceeeecccccCCCCccceEEEE
Q 014141          280 PQLKTLELDGCNEVFAQFSQREFPKLMNLNIS  311 (430)
Q Consensus       280 ~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~  311 (430)
                      .+|+.|+++.+. +.  .+|...++|+.|.+.
T Consensus       342 ~~Lq~LdLS~N~-Ls--~LP~lp~~L~~L~Ls  370 (788)
T PRK15387        342 SGLQELSVSDNQ-LA--SLPTLPSELYKLWAY  370 (788)
T ss_pred             cccceEecCCCc-cC--CCCCCCcccceehhh
Confidence            367777776655 32  234445566666553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.49  E-value=0.015  Score=61.39  Aligned_cols=30  Identities=23%  Similarity=0.092  Sum_probs=14.4

Q ss_pred             CCceEEEEecceeeecccccCCCCccceEEEEE
Q 014141          280 PQLKTLELDGCNEVFAQFSQREFPKLMNLNISF  312 (430)
Q Consensus       280 ~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~  312 (430)
                      ++|+.|++..+. +.  .+|...++|+.|+++.
T Consensus       382 ~~L~~LdLs~N~-Lt--~LP~l~s~L~~LdLS~  411 (788)
T PRK15387        382 SGLKELIVSGNR-LT--SLPVLPSELKELMVSG  411 (788)
T ss_pred             cccceEEecCCc-cc--CCCCcccCCCEEEccC
Confidence            356666665544 22  2333344555555533

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=95.17  E-value=0.017  Score=55.17  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=34.5

Q ss_pred             cCCCCCHHHHHHHHhcCC-hHHHHHHHHhhhhhhhhccc
Q 014141           22 WFSRFPDDILIHIISGLT-LKEAARTSVLSSRWKYLWTF   59 (430)
Q Consensus        22 ~is~LPdeiL~~Ils~L~-~~d~~rts~vSrrWr~lw~~   59 (430)
                      .+++||+|+|..|..+|+ .-|.+|.+.|||.||.....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            388999999999999997 78999999999999997554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.15  E-value=0.033  Score=51.44  Aligned_cols=36  Identities=25%  Similarity=0.470  Sum_probs=34.1

Q ss_pred             cccCCCCC----HHHHHHHHhcCChHHHHHHHHhhhhhhh
Q 014141           20 EDWFSRFP----DDILIHIISGLTLKEAARTSVLSSRWKY   55 (430)
Q Consensus        20 ~d~is~LP----deiL~~Ils~L~~~d~~rts~vSrrWr~   55 (430)
                      .|-|..||    |+|-..|||+|+..++..|-.|||+|++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            47789999    9999999999999999999999999986

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.69  E-value=0.041  Score=50.43  Aligned_cols=36  Identities=22%  Similarity=0.322  Sum_probs=31.0

Q ss_pred             ccCCCCCHHHHHHHHhc-----CChHHHHHHHHhhhhhhhh
Q 014141           21 DWFSRFPDDILIHIISG-----LTLKEAARTSVLSSRWKYL   56 (430)
Q Consensus        21 d~is~LPdeiL~~Ils~-----L~~~d~~rts~vSrrWr~l   56 (430)
                      +.|+.||||||..||..     |+.++..++|+|||.|+..
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            55789999999999865     4579999999999999863

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.60  E-value=0.0037  Score=53.72  Aligned_cols=64  Identities=17%  Similarity=0.164  Sum_probs=40.6

Q ss_pred             CCCCCCceEEEeeE-EEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCC
Q 014141          161 SGIKSLRSLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYS  224 (430)
Q Consensus       161 ~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~  224 (430)
                      .+++.+++|.+.+| .++|.-++.+-...|+||+|+|.+|..+++-.+.  ..+++|+.|.+.+.+.
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            45677777777777 4555556666666788888888888766542222  1346677776666553

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.54  E-value=0.11  Score=50.38  Aligned_cols=29  Identities=28%  Similarity=0.495  Sum_probs=13.7

Q ss_pred             CceEEEEecceeeecccccCC-CCccceEEEEE
Q 014141          281 QLKTLELDGCNEVFAQFSQRE-FPKLMNLNISF  312 (430)
Q Consensus       281 ~l~~L~l~~~~~~~~~~l~~~-~~~L~~L~l~~  312 (430)
                      +|+.|.+..+..   ..+|.. -.+|++|.++.
T Consensus       157 SLk~L~Is~c~~---i~LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        157 SLKTLSLTGCSN---IILPEKLPESLQSITLHI  186 (426)
T ss_pred             cccEEEecCCCc---ccCcccccccCcEEEecc
Confidence            566666655441   112221 23566666543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=93.23  E-value=0.026  Score=38.97  Aligned_cols=14  Identities=36%  Similarity=0.581  Sum_probs=6.5

Q ss_pred             hcCCcccceeeccC
Q 014141          186 HNCPLLENLRITQS  199 (430)
Q Consensus       186 ~~cp~Le~L~L~~~  199 (430)
                      .++|+|+.|.|.++
T Consensus        22 ~~l~~L~~L~l~~N   35 (61)
T PF13855_consen   22 SNLPNLETLDLSNN   35 (61)
T ss_dssp             TTGTTESEEEETSS
T ss_pred             cCCCCCCEeEccCC
Confidence            34455555555433

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=92.71  E-value=0.061  Score=34.40  Aligned_cols=35  Identities=31%  Similarity=0.474  Sum_probs=26.8

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  200 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (430)
                      ++|++|.|.+..+++  +...++.||+|+.|.+.++.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578999999888764  55557899999999999884

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=92.34  E-value=0.0057  Score=61.12  Aligned_cols=35  Identities=26%  Similarity=0.247  Sum_probs=21.7

Q ss_pred             CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          302 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      |+.|+.|.|.-     +....++.-+.-.|.|+.|+++..
T Consensus       338 C~kL~kL~L~~-----NrLiTLPeaIHlL~~l~vLDlreN  372 (1255)
T KOG0444|consen  338 CVKLQKLKLDH-----NRLITLPEAIHLLPDLKVLDLREN  372 (1255)
T ss_pred             hHHHHHhcccc-----cceeechhhhhhcCCcceeeccCC
Confidence            66777777633     233345566666777888877543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.11  E-value=0.1  Score=56.31  Aligned_cols=17  Identities=12%  Similarity=-0.003  Sum_probs=10.7

Q ss_pred             CcCCCccEEEEeeeecC
Q 014141          357 HSHQHLKLVELQGFNGR  373 (430)
Q Consensus       357 ~~~~~L~~v~i~~~~g~  373 (430)
                      ..+.+|+.+.|.++.+.
T Consensus       714 ~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  714 GSLGNLEELSILDCGIS  730 (889)
T ss_pred             ccccCcceEEEEcCCCc
Confidence            35566777777766554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.68  E-value=0.17  Score=46.45  Aligned_cols=86  Identities=17%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             CCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeec--ccccCCCCccceEEEEEeecCccchhhHHHHHh
Q 014141          251 SLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFA--QFSQREFPKLMNLNISFTAANQETLLGLSFIMK  328 (430)
Q Consensus       251 ~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~--~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~  328 (430)
                      .+..++++.+.-+ ..+.+..+..++.++|+++.|.++++. +..  ..+|-...||+.|-|....   ..+..+-.++.
T Consensus        69 ~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~---L~w~~~~s~l~  143 (418)
T KOG2982|consen   69 SVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTG---LSWTQSTSSLD  143 (418)
T ss_pred             Hhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCC---CChhhhhhhhh
Confidence            3555666666532 333455666899999999999999887 443  2344336788888885542   45556778999


Q ss_pred             hCCCceEEEEEEe
Q 014141          329 ACPFLEKLVLQIW  341 (430)
Q Consensus       329 ~~p~L~~L~l~~~  341 (430)
                      ..|.++.|++...
T Consensus       144 ~lP~vtelHmS~N  156 (418)
T KOG2982|consen  144 DLPKVTELHMSDN  156 (418)
T ss_pred             cchhhhhhhhccc
Confidence            9999999988664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.20  E-value=0.14  Score=46.25  Aligned_cols=224  Identities=16%  Similarity=0.092  Sum_probs=117.7

Q ss_pred             eeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCCCCCc--eeeccccccccCC-CCCCCCCCCCceEEEeeEE
Q 014141           99 INQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNY--YEIPQECYKNLQS-GCGLSGIKSLRSLTLCAVN  175 (430)
Q Consensus        99 l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~--~~lp~~~~~~l~~-p~~~~~~~~L~~L~L~~~~  175 (430)
                      +..+.+.+.   ..+.....|+....+ +++.|.+..........  -++|..    +.+ -+.+.+||+|++.+|+...
T Consensus        32 ~~evdLSGN---tigtEA~e~l~~~ia-~~~~L~vvnfsd~ftgr~kde~~~~----L~~Ll~aLlkcp~l~~v~LSDNA  103 (388)
T COG5238          32 LVEVDLSGN---TIGTEAMEELCNVIA-NVRNLRVVNFSDAFTGRDKDELYSN----LVMLLKALLKCPRLQKVDLSDNA  103 (388)
T ss_pred             eeEEeccCC---cccHHHHHHHHHHHh-hhcceeEeehhhhhhcccHHHHHHH----HHHHHHHHhcCCcceeeeccccc
Confidence            455555332   123456778887766 35555553322210000  001100    110 1133577888888888777


Q ss_pred             Ecc---hhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecCCccEEEEeCCceeEEEEeccee-e--
Q 014141          176 VTG---EVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDI-N--  246 (430)
Q Consensus       176 ~~~---~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~-~--  246 (430)
                      |..   +.+..++++...|+.|.|.+| |+..+   +|.   .-|.+|...      .=.-++|.|+.+.+..... .  
T Consensus       104 fg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rig---kal~~la~n------KKaa~kp~Le~vicgrNRlengs  173 (388)
T COG5238         104 FGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIG---KALFHLAYN------KKAADKPKLEVVICGRNRLENGS  173 (388)
T ss_pred             cCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHH---HHHHHHHHH------hhhccCCCceEEEeccchhccCc
Confidence            654   347777888888888888877 32211   221   112222211      1123678888887654322 1  


Q ss_pred             -----eecCCCCCceEEEEEeecCcch-hhHH-HHhhccCCCceEEEEecceeeec------ccccCCCCccceEEEEEe
Q 014141          247 -----LHVGSLPQLVDVVFHVTPMVQK-MHCI-GSIVSYLPQLKTLELDGCNEVFA------QFSQREFPKLMNLNISFT  313 (430)
Q Consensus       247 -----~~~~~~~~L~~~~i~~~~~~~~-~~~~-~~l~~~~~~l~~L~l~~~~~~~~------~~l~~~~~~L~~L~l~~~  313 (430)
                           ..+.+-..|+.+.+..+..... ..-+ ..-+..+.+|+.|++..+. ...      ....+..++|+.|.+.-|
T Consensus       174 ~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         174 KELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             HHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccch
Confidence                 1112224688888876544321 1111 1234567889999997766 221      122334778999998776


Q ss_pred             ecCccchhhHHHHHh--hCCCceEEEEEEe
Q 014141          314 AANQETLLGLSFIMK--ACPFLEKLVLQIW  341 (430)
Q Consensus       314 ~~~~~~~~~l~~lL~--~~p~L~~L~l~~~  341 (430)
                      .-+.....++.+-+.  ..|+|..|-.++.
T Consensus       253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             hhccccHHHHHHHhhhhcCCCccccccchh
Confidence            554444433333332  3688888877654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=91.19  E-value=0.22  Score=34.23  Aligned_cols=34  Identities=24%  Similarity=0.290  Sum_probs=18.8

Q ss_pred             CcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141          189 PLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY  223 (430)
Q Consensus       189 p~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~  223 (430)
                      |+|+.|.+.+| .++.+.-.  ..+++|+.|.+.++.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~   36 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN   36 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc
Confidence            57777888777 34433221  234566666665444

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=90.80  E-value=0.56  Score=40.67  Aligned_cols=82  Identities=21%  Similarity=0.232  Sum_probs=52.2

Q ss_pred             CCCCCCCCceEEEeeEEEcc--hhHHHHhhcCCcccceeeccCCC--CceeeEecCCCCcceEEEeecC-----CccEEE
Q 014141          159 GLSGIKSLRSLTLCAVNVTG--EVVEFFIHNCPLLENLRITQSPD--LLSLKVVGSSIPLKCLDIQFCY-----SIKEIE  229 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~--~~l~~ll~~cp~Le~L~L~~~~~--~~~~~i~~~~~~L~~L~l~~c~-----~l~~i~  229 (430)
                      .+.++++|.+|.|.+.+|+.  ..+..+   .|+|..|.|.+...  +.++.-.++||+|+.|++-+-+     +.....
T Consensus        59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv  135 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV  135 (233)
T ss_pred             cCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence            33477999999999887763  344443   58888998887542  3445445567788888776543     123333


Q ss_pred             E-eCCceeEEEEecc
Q 014141          230 I-SAPNLLSFKYIGQ  243 (430)
Q Consensus       230 i-~~P~L~~L~~~~~  243 (430)
                      + -.|+|+.|++.+.
T Consensus       136 l~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  136 LYKLPSLRTLDFQKV  150 (233)
T ss_pred             EEecCcceEeehhhh
Confidence            3 3477777766543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=90.44  E-value=0.14  Score=28.49  Aligned_cols=17  Identities=24%  Similarity=0.643  Sum_probs=14.6

Q ss_pred             CCcccceeeccCCCCce
Q 014141          188 CPLLENLRITQSPDLLS  204 (430)
Q Consensus       188 cp~Le~L~L~~~~~~~~  204 (430)
                      ||+|++|.|.+|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            78999999999987765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=89.97  E-value=0.16  Score=53.86  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=14.7

Q ss_pred             CCceEEEEecceeeecccccCC-CCccceEEEEE
Q 014141          280 PQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISF  312 (430)
Q Consensus       280 ~~l~~L~l~~~~~~~~~~l~~~-~~~L~~L~l~~  312 (430)
                      ++|+.|.+..+. +.  .+|.. .++|+.|+++.
T Consensus       325 ~sL~~L~Ls~N~-Lt--~LP~~l~~sL~~L~Ls~  355 (754)
T PRK15370        325 PGLKTLEAGENA-LT--SLPASLPPELQVLDVSK  355 (754)
T ss_pred             ccceeccccCCc-cc--cCChhhcCcccEEECCC
Confidence            356666665554 22  12222 34666666644

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=89.73  E-value=0.15  Score=54.06  Aligned_cols=53  Identities=13%  Similarity=0.147  Sum_probs=25.4

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeec
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC  222 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c  222 (430)
                      ++|+.|.|+++.+..  +..-+  ..+|+.|.+.++ .++.+.-. -.++|+.|.++++
T Consensus       241 ~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~N-~L~~LP~~-l~~sL~~L~Ls~N  293 (754)
T PRK15370        241 DTIQEMELSINRITE--LPERL--PSALQSLDLFHN-KISCLPEN-LPEELRYLSVYDN  293 (754)
T ss_pred             ccccEEECcCCccCc--CChhH--hCCCCEEECcCC-ccCccccc-cCCCCcEEECCCC
Confidence            467777777765542  11111  135666666544 22222111 1135666666655

>PRK15386 type III secretion protein GogB; Provisional

Probab=89.40  E-value=0.55  Score=45.72  Aligned_cols=113  Identities=18%  Similarity=0.208  Sum_probs=58.5

Q ss_pred             hhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-EeCCceeEEEEecc-eeeeecCCC-CCceEEEEE
Q 014141          185 IHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFKYIGQ-DINLHVGSL-PQLVDVVFH  261 (430)
Q Consensus       185 l~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i~~P~L~~L~~~~~-~~~~~~~~~-~~L~~~~i~  261 (430)
                      +..|++++.|.+.+| .++.+. ..+ ++|++|.+.+|..+..+. .-.++|++|.+.++ ...    .. +.|+.+.+.
T Consensus        48 ~~~~~~l~~L~Is~c-~L~sLP-~LP-~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~----sLP~sLe~L~L~  120 (426)
T PRK15386         48 IEEARASGRLYIKDC-DIESLP-VLP-NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS----GLPESVRSLEIK  120 (426)
T ss_pred             HHHhcCCCEEEeCCC-CCcccC-CCC-CCCcEEEccCCCCcccCCchhhhhhhheEccCccccc----ccccccceEEeC
Confidence            445777888888877 444432 111 457888887777655443 12357777777765 221    22 346666654


Q ss_pred             eecCcchhhHHHHhhccC-CCceEEEEecceeeecccccCCC-CccceEEEEE
Q 014141          262 VTPMVQKMHCIGSIVSYL-PQLKTLELDGCNEVFAQFSQREF-PKLMNLNISF  312 (430)
Q Consensus       262 ~~~~~~~~~~~~~l~~~~-~~l~~L~l~~~~~~~~~~l~~~~-~~L~~L~l~~  312 (430)
                      ... ..      . +..+ ++|+.|.+...........+..+ ++|++|.+..
T Consensus       121 ~n~-~~------~-L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~  165 (426)
T PRK15386        121 GSA-TD------S-IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTG  165 (426)
T ss_pred             CCC-Cc------c-cccCcchHhheeccccccccccccccccCCcccEEEecC
Confidence            211 10      1 1223 25677776432201111122222 5799999865

>PF13013 F-box-like_2: F-box-like domain

Probab=87.68  E-value=0.65  Score=36.15  Aligned_cols=30  Identities=13%  Similarity=-0.065  Sum_probs=27.0

Q ss_pred             cCCCCCHHHHHHHHhcCChHHHHHHHHhhh
Q 014141           22 WFSRFPDDILIHIISGLTLKEAARTSVLSS   51 (430)
Q Consensus        22 ~is~LPdeiL~~Ils~L~~~d~~rts~vSr   51 (430)
                      .+.+||+||+..|+.+-...+...++..++
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            588899999999999999999988887776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.56  E-value=0.048  Score=49.35  Aligned_cols=58  Identities=19%  Similarity=0.228  Sum_probs=27.7

Q ss_pred             CCceeEEEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          232 APNLLSFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       232 ~P~L~~L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      .|.|+.|.++-..+.  -.+..+.+|+++++.-+...+ ++.+ ..+.++++|+.|-|..++
T Consensus        40 Mp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~s-ldEL-~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   40 MPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIES-LDEL-EYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             cccceeEEeeccccccchhHHHHHHHHHHHHHhccccc-HHHH-HHHhcCchhhhHhhccCC
Confidence            455555554433221  123456666666655322111 1111 335677777777765444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=86.00  E-value=0.19  Score=52.93  Aligned_cols=166  Identities=20%  Similarity=0.168  Sum_probs=74.6

Q ss_pred             CCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCce
Q 014141          156 SGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNL  235 (430)
Q Consensus       156 ~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L  235 (430)
                      +|.++..+.+|+.|+++.-.|..  +...+..|..++.+...+...+..+..    .+.|.+.+....-...+.++--.+
T Consensus       106 lP~~~~~lknl~~LdlS~N~f~~--~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~ik~~~l~~n~l~~~~~~~i~~l  179 (1081)
T KOG0618|consen  106 LPASISELKNLQYLDLSFNHFGP--IPLVIEVLTAEEELAASNNEKIQRLGQ----TSIKKLDLRLNVLGGSFLIDIYNL  179 (1081)
T ss_pred             CchhHHhhhcccccccchhccCC--CchhHHhhhHHHHHhhhcchhhhhhcc----ccchhhhhhhhhcccchhcchhhh
Confidence            45555667777777777776643  233344555566665554422111111    113333333222112222222233


Q ss_pred             eE-EEEecceee-eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEe
Q 014141          236 LS-FKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFT  313 (430)
Q Consensus       236 ~~-L~~~~~~~~-~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~  313 (430)
                      +. +++.+.... ..+..++.|+.++...+...       .+-...++++.|....+. +........-.||+.++++. 
T Consensus       180 ~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls-------~l~~~g~~l~~L~a~~n~-l~~~~~~p~p~nl~~~dis~-  250 (1081)
T KOG0618|consen  180 THQLDLRYNEMEVLDLSNLANLEVLHCERNQLS-------ELEISGPSLTALYADHNP-LTTLDVHPVPLNLQYLDISH-  250 (1081)
T ss_pred             heeeecccchhhhhhhhhccchhhhhhhhcccc-------eEEecCcchheeeeccCc-ceeeccccccccceeeecch-
Confidence            33 343333221 23334444444433321111       222344455555555444 22111111134666666644 


Q ss_pred             ecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          314 AANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       314 ~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                          ..+..++..+..|++|+.|.+..
T Consensus       251 ----n~l~~lp~wi~~~~nle~l~~n~  273 (1081)
T KOG0618|consen  251 ----NNLSNLPEWIGACANLEALNANH  273 (1081)
T ss_pred             ----hhhhcchHHHHhcccceEecccc
Confidence                33444567777777777776643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.28  E-value=0.017  Score=52.14  Aligned_cols=105  Identities=21%  Similarity=0.300  Sum_probs=58.1

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEec
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG  242 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~  242 (430)
                      +.+.++|++++|.++|-.+   ....|.||.|.|.-.. ++.+.--.-|.+|++|-+....      |  ++|..|.   
T Consensus        18 l~~vkKLNcwg~~L~DIsi---c~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~------I--~sldEL~---   82 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI---CEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNC------I--ESLDELE---   82 (388)
T ss_pred             HHHhhhhcccCCCccHHHH---HHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcc------c--ccHHHHH---
Confidence            4667888888888766332   3356888888886442 2222222223445444433211      0  1111111   


Q ss_pred             ceeeeecCCCCCceEEEEEeecCcchhh--HHHHhhccCCCceEEEE
Q 014141          243 QDINLHVGSLPQLVDVVFHVTPMVQKMH--CIGSIVSYLPQLKTLEL  287 (430)
Q Consensus       243 ~~~~~~~~~~~~L~~~~i~~~~~~~~~~--~~~~l~~~~~~l~~L~l  287 (430)
                           -+.++|+|+.+++.-++-+...+  |-...+..+|+|+.|+=
T Consensus        83 -----YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   83 -----YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             -----HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence                 13467888888887665544332  33367788889988874

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=84.82  E-value=0.2  Score=45.01  Aligned_cols=65  Identities=20%  Similarity=0.169  Sum_probs=33.9

Q ss_pred             HHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC-----CccEEEEeCCceeEEEEecceee
Q 014141          181 VEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY-----SIKEIEISAPNLLSFKYIGQDIN  246 (430)
Q Consensus       181 l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~-----~l~~i~i~~P~L~~L~~~~~~~~  246 (430)
                      +..+....-.|+.|.+.+|...+....+ .+++||.|.++.-.     .+..+...+|+|+++++.+..+.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            3333334445555555555322222222 23566777665431     23334455688888888887654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=84.28  E-value=0.28  Score=53.01  Aligned_cols=63  Identities=27%  Similarity=0.280  Sum_probs=33.7

Q ss_pred             CCCCCCceEEEeeEEE-cchhHHHHhhcCCcccceeeccCCCCceeeEe-cCCCCcceEEEeecC
Q 014141          161 SGIKSLRSLTLCAVNV-TGEVVEFFIHNCPLLENLRITQSPDLLSLKVV-GSSIPLKCLDIQFCY  223 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~-~~~~~L~~L~l~~c~  223 (430)
                      ..++.|++|-+.+..- -...-..++...|.|..|+|++|.....+.-. +.+-+||.|++.++.
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~  606 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG  606 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC
Confidence            3556777777776531 11112334566778888888776654433111 223455666555544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=83.87  E-value=0.026  Score=47.30  Aligned_cols=42  Identities=26%  Similarity=0.164  Sum_probs=22.5

Q ss_pred             ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          298 SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       298 l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      +|....+|+.|++-.-.  +.+..++..-+.....|++|.|++.
T Consensus       142 lp~dvg~lt~lqil~lr--dndll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  142 LPPDVGKLTNLQILSLR--DNDLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             CChhhhhhcceeEEeec--cCchhhCcHHHHHHHHHHHHhcccc
Confidence            44445556666642221  2445555566666666677766654

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=83.87  E-value=0.5  Score=48.12  Aligned_cols=39  Identities=23%  Similarity=0.469  Sum_probs=36.1

Q ss_pred             CccccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 014141           18 NLEDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL   56 (430)
Q Consensus        18 ~~~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l   56 (430)
                      ...|.++.||-|+..+|+++|+.++.+.++++|+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            346899999999999999999999999999999999874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=83.34  E-value=0.2  Score=52.82  Aligned_cols=176  Identities=20%  Similarity=0.196  Sum_probs=85.5

Q ss_pred             CCCCCCCCCCCCceEEEeeEEEcc--hhH--------HHHhhcCC--------------cccceeeccCCCCc-eeeEec
Q 014141          155 QSGCGLSGIKSLRSLTLCAVNVTG--EVV--------EFFIHNCP--------------LLENLRITQSPDLL-SLKVVG  209 (430)
Q Consensus       155 ~~p~~~~~~~~L~~L~L~~~~~~~--~~l--------~~ll~~cp--------------~Le~L~L~~~~~~~-~~~i~~  209 (430)
                      .+|+..+++.+|++|.|....+..  +.+        +.+-.+|-              .|+.|.+.+..--+ .+.+-.
T Consensus       301 yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~  380 (1081)
T KOG0618|consen  301 YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLV  380 (1081)
T ss_pred             hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhc
Confidence            356777789999999999886643  111        11111222              23333333322111 111112


Q ss_pred             CCCCcceEEEeecCCccEEE----EeCCceeEEEEeccee---eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCc
Q 014141          210 SSIPLKCLDIQFCYSIKEIE----ISAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQL  282 (430)
Q Consensus       210 ~~~~L~~L~l~~c~~l~~i~----i~~P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l  282 (430)
                      .++.||.|.+..-. +..+.    -.-+.|+.|.++|...   +..+..+++|+.+.-+-+...    .+ .-+..++.|
T Consensus       381 ~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~----~f-Pe~~~l~qL  454 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL----SF-PELAQLPQL  454 (1081)
T ss_pred             cccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee----ec-hhhhhcCcc
Confidence            33556666655432 11111    1224455555555532   122233444444433321111    11 224677888


Q ss_pred             eEEEEecceeeecccccCC--CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          283 KTLELDGCNEVFAQFSQRE--FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       283 ~~L~l~~~~~~~~~~l~~~--~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      +.++++++. +....++..  -++|++|+++.......+    ..-|..+.++..+.+...
T Consensus       455 ~~lDlS~N~-L~~~~l~~~~p~p~LkyLdlSGN~~l~~d----~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  455 KVLDLSCNN-LSEVTLPEALPSPNLKYLDLSGNTRLVFD----HKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             eEEecccch-hhhhhhhhhCCCcccceeeccCCcccccc----hhhhHHhhhhhheecccC
Confidence            889988887 655555554  368999998665321111    234444555555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=82.69  E-value=0.22  Score=50.35  Aligned_cols=59  Identities=14%  Similarity=0.066  Sum_probs=34.5

Q ss_pred             ccCCCceEEEEecceeeecccccCC---CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          277 SYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      ..+++|+.|+++... -....+|..   +.||..++++-     ++...++.-+-..++|+.|.++..
T Consensus       194 PsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~-----N~Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  194 PSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSE-----NNLPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             ccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccc-----cCCCcchHHHhhhhhhheeccCcC
Confidence            344455555555554 222334443   66777777643     344456677778888888887654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.14  E-value=0.56  Score=40.63  Aligned_cols=43  Identities=16%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             hhcCCcccceeeccCCCCceee---EecCCCCcceEEEeecCCccE
Q 014141          185 IHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKE  227 (430)
Q Consensus       185 l~~cp~Le~L~L~~~~~~~~~~---i~~~~~~L~~L~l~~c~~l~~  227 (430)
                      +..++.++.|.+.+|..+.+..   +....++|+.|+|++|+.+.+
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            5689999999999998876542   333558888888888885444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	430
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 64.6 bits (157), Expect = 2e-11
 Identities = 49/382 (12%), Positives = 124/382 (32%), Gaps = 63/382 (16%)

Query: 23  FSRFPDDILIHIISGLT----LKEAARTSVLSSRWKYL-WTFTTSLDFDKKVKYMSFPPD 77
                DD++  +++ +T       A+       RW  +       +         +  PD
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLV---CRRWFKIDSETREHVTMA---LCYTATPD 66

Query: 78  YQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFE-LDLS 136
               ++ +   + L+L    R       F L  ++         T I+ N+R  + +   
Sbjct: 67  RLSRRFPNL--RSLKLKGKPRAA----MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFR 120

Query: 137 PGTYDNY--YEIPQECYKNLQ----SGC------GLSGI----KSLRSLTL---CAVNVT 177
                +     + +    +L+      C      GL  I    + +++L +         
Sbjct: 121 RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD 180

Query: 178 GEVVEFFIHNCPLLENLRITQSP----DLLSLKVVGSSIP-LKCLDIQFCYSIKEIEI-- 230
           G+ +     +   LE L    +         L+ +  +   L  + +     ++ +    
Sbjct: 181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK 240

Query: 231 SAPNL-------LSFKYIGQDINLHVGSLPQLVDV-VFHVTPMVQKMHCIGSIVSYLPQL 282
           +A NL       L+      +  +++    +L  + + ++ P     + +  +  +  Q+
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-----NEMPILFPFAAQI 295

Query: 283 KTLELDGCNEVFAQFSQ--REFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI 340
           + L+L              ++ P L  L       N     GL  + + C  L++L ++ 
Sbjct: 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR----NVIGDRGLEVLAQYCKQLKRLRIER 351

Query: 341 WNNGRRIGKKRHQISKHSHQHL 362
             + + +  +   +S+     L
Sbjct: 352 GADEQGMEDEEGLVSQRGLIAL 373

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 38/209 (18%)

Query: 164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIP-LKCLDIQFC 222
             +R L L    +  E     I  CP LE L          L+V+      LK L I+  
Sbjct: 293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERG 352

Query: 223 YSIKEIEISAPNL--LSFKYIG------QDINLH------------VGSLPQL------- 255
              + +E     +       +       + + ++               L  L       
Sbjct: 353 ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412

Query: 256 VDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGC-----NEVFAQFSQREFPKLMNLNI 310
           +D    +T +    + + S++    +L+            +   +   Q   P +  + +
Sbjct: 413 LDREERITDLPLD-NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY-SPNVRWMLL 470

Query: 311 SFTAANQETLLGLSFIMKACPFLEKLVLQ 339
            +     E+  GL    + CP L+KL ++
Sbjct: 471 GYV---GESDEGLMEFSRGCPNLQKLEMR 496

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 38/250 (15%), Positives = 72/250 (28%), Gaps = 52/250 (20%)

Query: 114 CNITNWVNTAIAKNVRNF-ELDLS-----PGTYDNYYEIPQECYKNLQSGCGLSGIKSLR 167
             I +     +A+  +    L +       G  D    + Q     L  GC     + L 
Sbjct: 327 NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC-----QELE 381

Query: 168 SLTLCAVNVTGEVVEFFIHNCPLLENLR---------ITQSPDLLSLKVVGSSIP-LKCL 217
            + +   ++T E +E        L + R         IT  P    ++ +      L+  
Sbjct: 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441

Query: 218 DIQFC------YSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHC 271
                        +  I   +PN+       + + L         D              
Sbjct: 442 AFYLRQGGLTDLGLSYIGQYSPNV-------RWMLL---GYVGESDE------------G 479

Query: 272 IGSIVSYLPQLKTLELDGCN--EVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKA 329
           +       P L+ LE+ GC   E     +  + P L  L +    A+  T   L  + + 
Sbjct: 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM-TGQDLMQMARP 538

Query: 330 CPFLEKLVLQ 339
              +E +  +
Sbjct: 539 YWNIELIPSR 548

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 59/332 (17%), Positives = 106/332 (31%), Gaps = 61/332 (18%)

Query: 23  FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQSK 82
           +   PD++L+ I S L L E  + S +  RW Y      SL     +   +  PD     
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRW-YRLASDESLWQTLDLTGKNLHPD----- 62

Query: 83  YISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDN 142
                  V        +  FR              +          R   +DLS      
Sbjct: 63  -------VTGRLLSQGVIAFRCPRSF--------MDQPLAEHFSPFRVQHMDLS------ 101

Query: 143 YYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDL 202
              I       + S C       L++L+L  + ++  +V   +     L  L ++     
Sbjct: 102 NSVIEVSTLHGILSQC-----SKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGF 155

Query: 203 --LSLKVVGSSIP-LKCLDIQFCYSIKEIEISA------PNL--LSFKYIGQDINLH--- 248
              +L+ + SS   L  L++ +C+   E  +          +  L+     +++      
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 249 --VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEV----FAQFSQREF 302
             V   P LV +    + M+ K  C       L  L+ L L  C ++      +  +   
Sbjct: 216 TLVRRCPNLVHLDLSDSVML-KNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGE--I 271

Query: 303 PKLMNLNISFTAANQETLLGLSFIMKACPFLE 334
           P L  L +            L  + +A P L+
Sbjct: 272 PTLKTLQVFGIV----PDGTLQLLKEALPHLQ 299

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 59/374 (15%), Positives = 112/374 (29%), Gaps = 86/374 (22%)

Query: 20  EDWFSRFPDDILIHIISGLT----LKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFP 75
           +     FP+++L H+ S +         +        W  +              Y   P
Sbjct: 3   KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVC---KSWYEIE-RWCRRKVFIGNCYAVSP 58

Query: 76  P------------DYQQSKYISWVNKVLELHRGSRINQFRICF-------RLDAKHKCNI 116
                        + +   + +  N V +   G                  +  K    +
Sbjct: 59  ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKR-MVV 117

Query: 117 TNWVNTAIAKNVRNFE-LDLS--PG-TYDNYYEIPQECYKNLQ----SGCGLSGI----- 163
           T+     IAK+ +NF+ L LS   G + D    I   C +NL+        +  +     
Sbjct: 118 TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC-RNLKELDLRESDVDDVSGHWL 176

Query: 164 -------KSLRSLTL--CAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIP- 213
                   SL SL +   A  V+   +E  +  CP L++L++ ++  L  L  +    P 
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236

Query: 214 LKCLDIQFCYSI------KEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQ 267
           L+ L      +         + ++       + +    +     LP              
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP-------------- 282

Query: 268 KMHCIGSIVSYLPQLKTLELDGCN---EVFAQFSQREFPKLMNLNISFTAANQETLLGLS 324
                 ++ S   +L TL L           +   +  PKL  L +     +     GL 
Sbjct: 283 ------AVYSVCSRLTTLNLSYATVQSYDLVKLLCQ-CPKLQRLWVL----DYIEDAGLE 331

Query: 325 FIMKACPFLEKLVL 338
            +   C  L +L +
Sbjct: 332 VLASTCKDLRELRV 345

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 37/197 (18%), Positives = 69/197 (35%), Gaps = 34/197 (17%)

Query: 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL----------SLKVVG 209
           L     L+ L +    +    +E     C  L  LR+  S   +           L  V 
Sbjct: 310 LCQCPKLQRLWVLD-YIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368

Query: 210 SSIPLKCLDIQFCY-----SIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP 264
              P     + FC      ++  I  + PN+  F+    +         + +D+      
Sbjct: 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI------ 422

Query: 265 MVQKMHCIGSIVSYLPQLKTLELDGC--NEVFAQFSQREFPKLMNLNISFTAANQETLLG 322
                   G+IV +   L+ L L G   ++VF         K+  L+++F     ++ LG
Sbjct: 423 ------GFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTY-AKKMEMLSVAFA---GDSDLG 472

Query: 323 LSFIMKACPFLEKLVLQ 339
           +  ++  C  L KL ++
Sbjct: 473 MHHVLSGCDSLRKLEIR 489

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 35/258 (13%), Positives = 82/258 (31%), Gaps = 56/258 (21%)

Query: 105 CFRLDAKHKCN-ITNWVNTAIAKNVRNFE-LDLS---PGTYDNYYEIPQECYKNLQSGCG 159
           C +L      + I +     +A   ++   L +    P   +    + ++   ++  GC 
Sbjct: 313 CPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC- 371

Query: 160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRI----TQSPDLLSLKVVGSSIP-- 213
                 L S+      +T   +     N P +   R+     ++PD L+L+ +       
Sbjct: 372 ----PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427

Query: 214 ------LKCLDIQFC---YSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP 264
                 L+ L +         + I   A  +       + +++   +     D+      
Sbjct: 428 VEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM-------EMLSV---AFAGDSDL------ 471

Query: 265 MVQKMHCIGSIVSYLPQLKTLELDGCN----EVFAQFSQREFPKLMNLNISFTAANQETL 320
                  +  ++S    L+ LE+  C      + A  S+     + +L +S       + 
Sbjct: 472 ------GMHHVLSGCDSLRKLEIRDCPFGDKALLANASK--LETMRSLWMSSC---SVSF 520

Query: 321 LGLSFIMKACPFLEKLVL 338
                + +  P L   V+
Sbjct: 521 GACKLLGQKMPKLNVEVI 538

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 214 LKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIG 273
           ++ ++++      +  +       + Y    I     S   L ++   +  MV    C+ 
Sbjct: 68  VRSVELKGKPHFADFNLVPDGWGGYVYPW--IEAMSSSYTWLEEI--RLKRMVVTDDCLE 123

Query: 274 SIVSYLPQLKTLELDGCNEV----FAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKA 329
            I       K L L  C        A  +      L  L++  +  +  +   LS     
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT-CRNLKELDLRESDVDDVSGHWLSHFPDT 182

Query: 330 CPFLEKLVLQ 339
              L  L + 
Sbjct: 183 YTSLVSLNIS 192

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 5e-10
 Identities = 66/450 (14%), Positives = 124/450 (27%), Gaps = 144/450 (32%)

Query: 7   HISEDAPEKKENLEDWFSRFPDDILIHIISGLTLK--EAARTSVLSSRWKYLWTFTTSLD 64
           H+  +  E +   +D  S F D      +     K  +    S+LS             +
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAF----VDNFDCKDVQDMPKSILSKE-----------E 50

Query: 65  FDKKVKYMSFPPDYQQSKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAI 124
            D  +           +  + W    L   +   + +F     ++   + N   ++ + I
Sbjct: 51  IDHIIMS---KDAVSGTLRLFWT---LLSKQEEMVQKF-----VEEVLRINY-KFLMSPI 98

Query: 125 AK-------NVRNFELDLSPGTYDNY----YEIP--------QECYKNLQSG-----CGL 160
                      R +         DN     Y +         ++    L+        G+
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 161 SGI-KSLRSLTLCAVNVTGEVVEFF---IH-------NCP-----LLENLRITQSPDLLS 204
            G  K+   + L     + +V       I        N P     +L+ L     P+  S
Sbjct: 159 LGSGKT--WVALDVCL-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 205 LKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLV--DV---- 258
                S+I L+   IQ      E+      LL  K        +   L  LV  +V    
Sbjct: 216 RSDHSSNIKLRIHSIQ-----AELR----RLLKSK-------PYENCL--LVLLNVQNAK 257

Query: 259 ---VFHVTPMVQKMHCIGSIVSYLPQLKTLEL--DGCNEVFAQFSQREFPKLMNLNISFT 313
               F++        C           K L          F   +      L + +++ T
Sbjct: 258 AWNAFNL-------SC-----------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 314 AANQETLLGLSFIMK-------AC---PFLEKLV-------LQIWNNGRRIGKKR-HQIS 355
               ++LL      +            P    ++       L  W+N + +   +   I 
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359

Query: 356 KHSHQHLKLVELQGFNGREIDFELAFYVFE 385
           + S   L+  E +        F+    VF 
Sbjct: 360 ESSLNVLEPAEYRKM------FD-RLSVFP 382

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 8e-09
 Identities = 67/433 (15%), Positives = 133/433 (30%), Gaps = 124/433 (28%)

Query: 7   HISEDAPEKKENLEDWFSRF------PDDILI-------HIISGLTLKEAARTSVLSSRW 53
             S +   +  +++    R        + +L+          +   L    +  +L++R+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKI-LLTTRF 274

Query: 54  KYLWTFTTSLDFDKKVKY------MSFPPDYQQSKYISWVN-KVLEL-HRGSRINQFRIC 105
           K +   T  L              M+  PD  +S  + +++ +  +L       N  R+ 
Sbjct: 275 KQV---TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS 331

Query: 106 FRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKS 165
                             IA+++R+        T+DN+  +  +    +          S
Sbjct: 332 I-----------------IAESIRDG-----LATWDNWKHVNCDKLTTIIE-------SS 362

Query: 166 LRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSI 225
           L  L         E  + F       + L +   P         + IP   L + +   I
Sbjct: 363 LNVLE------PAEYRKMF-------DRLSVF--PP-------SAHIPTILLSLIWFDVI 400

Query: 226 K-EIEISAPNLLSFKYIGQDINLHVGSLPQL-VDVVFHVTPMVQKMHCIGSIVSYLPQLK 283
           K ++ +    L  +  + +       S+P + +++   +      +H   SIV +    K
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA-LH--RSIVDHYNIPK 457

Query: 284 TLELDGCNEV-----FAQF----------SQR--EFPKLMNLNISF---------TAANQ 317
           T + D          F              +R   F  +  L+  F         TA N 
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNA 516

Query: 318 -----ETLLGL----SFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQ 368
                 TL  L     +I    P  E+LV  I +   +I +          ++  L+ + 
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN-----LICSKYTDLLRIA 571

Query: 369 GFNGREIDFELAF 381
                E  FE A 
Sbjct: 572 LMAEDEAIFEEAH 584

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	430
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.84
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.86
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.86
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.79
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.6
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.57
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.53
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.44
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.42
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.37
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.35
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.31
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.3
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.1
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.03
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.0
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.99
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.99
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.98
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.97
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	97.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	97.94
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.94
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.92
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.92
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.91
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.9
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	97.88
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.88
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.87
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	97.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	97.83
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.82
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.82
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.76
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	97.76
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	97.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.73
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.72
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.72
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.71
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.7
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	97.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.68
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.67
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.67
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.66
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.65
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.58
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.57
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.56
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.46
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.42
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.41
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	97.38
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.35
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.33
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.32
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.31
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.02
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	96.98
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.97
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	96.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.91
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.88
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	96.7
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	96.53
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.49
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.3
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.22
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.2
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.1
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.03
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	95.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	95.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	95.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	95.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.27
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	95.27
3e6j_A	229	Variable lymphocyte receptor diversity region; var	95.14
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.01
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	94.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	94.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	94.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	93.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	93.35
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	93.04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	92.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	92.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	91.77
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	91.74
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	91.05
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	89.65
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	89.58
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	88.34
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	87.07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	85.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	84.18
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	83.28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	82.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	82.43
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	81.23
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	80.77

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.84  E-value=2e-20  Score=191.91  Aligned_cols=152  Identities=14%  Similarity=0.206  Sum_probs=91.3

Q ss_pred             cccCCCCCHHHHHHHHhcCC-hHHHHHHHHhhhhhhhhcc-cCceeeecCCccccCCCCchhHhHHHHHHHHHHhhcCCC
Q 014141           20 EDWFSRFPDDILIHIISGLT-LKEAARTSVLSSRWKYLWT-FTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRGS   97 (430)
Q Consensus        20 ~d~is~LPdeiL~~Ils~L~-~~d~~rts~vSrrWr~lw~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~   97 (430)
                      .|+|++||||||.+||+||+ .+|++++++|||||+++.. ....+++... ...      ..       ...+...  +
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~~------~~-------~~~~~~~--~   66 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNC-YAV------SP-------ATVIRRF--P   66 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESST-TSS------CH-------HHHHHHC--T
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccc-ccc------CH-------HHHHhhC--C
Confidence            58999999999999999999 9999999999999998721 2223444332 110      01       1222222  3


Q ss_pred             ceeEEEEEEecC--------CCCCccHhHHHHHHhh--cCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCc
Q 014141           98 RINQFRICFRLD--------AKHKCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLR  167 (430)
Q Consensus        98 ~l~~l~l~~~~~--------~~~~~~v~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~  167 (430)
                      .++++.+.....        ......+..|+.....  .++++|++............+.             .++++|+
T Consensus        67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~-------------~~~~~L~  133 (594)
T 2p1m_B           67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA-------------KSFKNFK  133 (594)
T ss_dssp             TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-------------HHCTTCC
T ss_pred             CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH-------------HhCCCCc
Confidence            488888866311        0122456778887654  4899999876532110001110             1457888


Q ss_pred             eEEEeeE-EEcchhHHHHhhcCCcccceeeccCC
Q 014141          168 SLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSP  200 (430)
Q Consensus       168 ~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (430)
                      +|+|.++ .+++..+..++.+||+|++|+|.+|.
T Consensus       134 ~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          134 VLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             EEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             EEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            8888877 56666677777778888888877764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=2.1e-19  Score=184.34  Aligned_cols=101  Identities=11%  Similarity=0.197  Sum_probs=60.8

Q ss_pred             cccCC----CCCHHHHHHHHhcC-ChHHHHHHHHhhhhhhhhcccCc-eeeecCCccccCCCCchhHhHHHHHHHHHHhh
Q 014141           20 EDWFS----RFPDDILIHIISGL-TLKEAARTSVLSSRWKYLWTFTT-SLDFDKKVKYMSFPPDYQQSKYISWVNKVLEL   93 (430)
Q Consensus        20 ~d~is----~LPdeiL~~Ils~L-~~~d~~rts~vSrrWr~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~   93 (430)
                      .|+++    +||||+|.+||+|| +.+|++++++|||||++++...+ .+.+. . .+.            ..+..++..
T Consensus         6 ~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~-~~~------------~~~~~~~~~   71 (592)
T 3ogk_B            6 IKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-L-CYT------------ATPDRLSRR   71 (592)
T ss_dssp             ------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-C-GGG------------SCHHHHHHH
T ss_pred             hhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-e-ccc------------cChHHHHHh
Confidence            45555    89999999999999 79999999999999999854332 12221 1 111            112233333


Q ss_pred             cCCCceeEEEEEEecC--------CCCCccHhHHHHHHhh--cCcEEEEEEcC
Q 014141           94 HRGSRINQFRICFRLD--------AKHKCNITNWVNTAIA--KNVRNFELDLS  136 (430)
Q Consensus        94 ~~~~~l~~l~l~~~~~--------~~~~~~v~~wl~~~~~--~~v~~L~l~~~  136 (430)
                      .+.  ++++.+.....        ....+....|+.....  +++++|++...
T Consensus        72 ~~~--L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  122 (592)
T 3ogk_B           72 FPN--LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM  122 (592)
T ss_dssp             CTT--CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             CCC--CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc
Confidence            333  88888865211        1223445567766553  47888887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=4.2e-18  Score=162.01  Aligned_cols=267  Identities=17%  Similarity=0.194  Sum_probs=147.5

Q ss_pred             cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhcc---cCceeeecCCccccCCCCchhHhHHHHHHHHHHhhcCC
Q 014141           20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWT---FTTSLDFDKKVKYMSFPPDYQQSKYISWVNKVLELHRG   96 (430)
Q Consensus        20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~   96 (430)
                      ...|++||||++.+||++|+.+|+++++.|||+|+++..   ....+++... .+.                        
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~-~~~------------------------   60 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGK-NLH------------------------   60 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTC-BCC------------------------
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccc-cCC------------------------
Confidence            355899999999999999999999999999999999842   1223444333 111                        


Q ss_pred             CceeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEeeEEE
Q 014141           97 SRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNV  176 (430)
Q Consensus        97 ~~l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~~~  176 (430)
                                          ...+......+++.+++....-.               ..++.+.++++|++|+|.++.+
T Consensus        61 --------------------~~~~~~~~~~~l~~L~l~~n~l~---------------~~~~~~~~~~~L~~L~L~~~~l  105 (336)
T 2ast_B           61 --------------------PDVTGRLLSQGVIAFRCPRSFMD---------------QPLAEHFSPFRVQHMDLSNSVI  105 (336)
T ss_dssp             --------------------HHHHHHHHHTTCSEEECTTCEEC---------------SCCCSCCCCBCCCEEECTTCEE
T ss_pred             --------------------HHHHHhhhhccceEEEcCCcccc---------------ccchhhccCCCCCEEEccCCCc
Confidence                                11122222233444433211000               0111234679999999999988


Q ss_pred             cchhHHHHhhcCCcccceeeccCCCCce-eeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCc
Q 014141          177 TGEVVEFFIHNCPLLENLRITQSPDLLS-LKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQL  255 (430)
Q Consensus       177 ~~~~l~~ll~~cp~Le~L~L~~~~~~~~-~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L  255 (430)
                      ++..+..++..||+|++|.|.+|..... ...-+.+++|+.|.+.+|..+...               ..+..+.++++|
T Consensus       106 ~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~---------------~l~~~~~~~~~L  170 (336)
T 2ast_B          106 EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF---------------ALQTLLSSCSRL  170 (336)
T ss_dssp             CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH---------------HHHHHHHHCTTC
T ss_pred             CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH---------------HHHHHHhcCCCC
Confidence            8777888889999999999998853211 111134678888888877422210               001112234444


Q ss_pred             eEEEEEee-cCcchhhHHHHhhccCC-CceEEEEecce-eeecccccC---CCCccceEEEEEeecCccchhhHHHHHhh
Q 014141          256 VDVVFHVT-PMVQKMHCIGSIVSYLP-QLKTLELDGCN-EVFAQFSQR---EFPKLMNLNISFTAANQETLLGLSFIMKA  329 (430)
Q Consensus       256 ~~~~i~~~-~~~~~~~~~~~l~~~~~-~l~~L~l~~~~-~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~l~~lL~~  329 (430)
                      +.+.+..+ ....  ..+...+..++ +|+.|++.++. .+....++.   .+++|++|+++.+..  .... ....+..
T Consensus       171 ~~L~l~~~~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~--l~~~-~~~~l~~  245 (336)
T 2ast_B          171 DELNLSWCFDFTE--KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM--LKND-CFQEFFQ  245 (336)
T ss_dssp             CEEECCCCTTCCH--HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT--CCGG-GGGGGGG
T ss_pred             CEEcCCCCCCcCh--HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc--CCHH-HHHHHhC
Confidence            44444433 1110  11224456667 77777776663 122222222   266777777744321  0111 1223456


Q ss_pred             CCCceEEEEEEeccccccccCccccccCcCCCccEEEEeee
Q 014141          330 CPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGF  370 (430)
Q Consensus       330 ~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~  370 (430)
                      +|+|++|++.....   ..+.+. ..-..+++|+.+.+.|.
T Consensus       246 l~~L~~L~l~~~~~---~~~~~~-~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          246 LNYLQHLSLSRCYD---IIPETL-LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCEEECTTCTT---CCGGGG-GGGGGCTTCCEEECTTS
T ss_pred             CCCCCEeeCCCCCC---CCHHHH-HHHhcCCCCCEEeccCc
Confidence            68888887754321   011110 11123667888887766

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.86  E-value=1.6e-09  Score=110.55  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=18.5

Q ss_pred             CceEEEeeEE-EcchhHHHHhhcCCcccceeeccC
Q 014141          166 LRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       166 L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~  199 (430)
                      |++|+|.++. +++..+..++.+||+|++|+|.+|
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~  174 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES  174 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc
Confidence            5555555553 334445555555666666666555

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.86  E-value=1.4e-09  Score=72.82  Aligned_cols=38  Identities=32%  Similarity=0.478  Sum_probs=33.4

Q ss_pred             cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 014141           20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW   57 (430)
Q Consensus        20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw   57 (430)
                      .+.++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            46689999999999999999999999999999999853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.82  E-value=1.7e-09  Score=110.50  Aligned_cols=82  Identities=15%  Similarity=0.147  Sum_probs=58.6

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecC-------CccEEEEe
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCY-------SIKEIEIS  231 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~-------~l~~i~i~  231 (430)
                      .+++|++|+|.++.+++..+..+..+||+|+.|.|.+|..++..   .+...+++|++|.+.+|.       .+..+.-.
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            67999999999999988888887778999999999999655431   122256889999888765       01111223


Q ss_pred             CCceeEEEEecc
Q 014141          232 APNLLSFKYIGQ  243 (430)
Q Consensus       232 ~P~L~~L~~~~~  243 (430)
                      .|+|++|++.+.
T Consensus       183 ~~~L~~L~l~~~  194 (594)
T 2p1m_B          183 YTSLVSLNISCL  194 (594)
T ss_dssp             CCCCCEEECTTC
T ss_pred             CCcCcEEEeccc
Confidence            456777766544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.79  E-value=1.6e-08  Score=95.47  Aligned_cols=168  Identities=23%  Similarity=0.305  Sum_probs=84.9

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEE---------
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIE---------  229 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~---------  229 (430)
                      +.++++|++|+|.+..+.  .+...+..+++|+.|.|.++... .+. .-..+++|+.|.+.+|.....+.         
T Consensus       100 l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             hhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            345566666666655544  22223445566666666655321 111 01234556666666554322211         


Q ss_pred             ---EeCCceeEEEEeccee---eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC--
Q 014141          230 ---ISAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE--  301 (430)
Q Consensus       230 ---i~~P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~--  301 (430)
                         -..++|+.|++.+..+   +-.+..+++|+.+.+..+....    +..-+..+++|+.|++..+. +. ..+|..  
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----l~~~l~~l~~L~~L~Ls~n~-~~-~~~p~~~~  250 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----LGPAIHHLPKLEELDLRGCT-AL-RNYPPIFG  250 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC----CCGGGGGCTTCCEEECTTCT-TC-CBCCCCTT
T ss_pred             hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc----CchhhccCCCCCEEECcCCc-ch-hhhHHHhc
Confidence               1256666666665533   2234556677777776544331    11224567778888877654 11 122322  


Q ss_pred             -CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          302 -FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       302 -~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                       +++|++|++..+..    ...+..-+..+++|+.|+|..
T Consensus       251 ~l~~L~~L~L~~n~~----~~~~p~~~~~l~~L~~L~L~~  286 (328)
T 4fcg_A          251 GRAPLKRLILKDCSN----LLTLPLDIHRLTQLEKLDLRG  286 (328)
T ss_dssp             CCCCCCEEECTTCTT----CCBCCTTGGGCTTCCEEECTT
T ss_pred             CCCCCCEEECCCCCc----hhhcchhhhcCCCCCEEeCCC
Confidence             56666666643211    111223356777888877744

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.60  E-value=9.5e-07  Score=83.95  Aligned_cols=215  Identities=12%  Similarity=0.109  Sum_probs=141.0

Q ss_pred             CCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee---EecCCCCcceEEEeecCCccEEE---E-
Q 014141          158 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK---VVGSSIPLKCLDIQFCYSIKEIE---I-  230 (430)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~---i~~~~~~L~~L~l~~c~~l~~i~---i-  230 (430)
                      ..+.++++|++|+|.+..++.- ....+.++++|+.|.+.++.. +.+.   .-..+++|+.|.+.++..+..+.   + 
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  171 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA  171 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred             hhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence            3467889999999999877642 223467899999999998843 2222   22456899999999986455553   1 


Q ss_pred             eCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeecccc---c--C
Q 014141          231 SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQFS---Q--R  300 (430)
Q Consensus       231 ~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~~l---~--~  300 (430)
                      ..++|+.|++.+....    ..+..+++|+.+.+..+...    .+. .++..+++|+.|++..+. +.....   +  .
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~  246 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI----LLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGE  246 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST----THHHHHHHHTTTEEEEEEESCB-CTTCCCC------
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc----cchhhhhhhcccccEEECCCCc-ccccccccccccc
Confidence            3578999999877442    24557788999988865432    222 445678999999998876 332111   1  1


Q ss_pred             CCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCcccccc--CcCCCccEEEEee--eecChhh
Q 014141          301 EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISK--HSHQHLKLVELQG--FNGREID  376 (430)
Q Consensus       301 ~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~L~~v~i~~--~~g~~~e  376 (430)
                      ....++.+.+....-.......+...+..+++|+.|++....-    .   ..+..  ..+++|+.+.+.+  +.+....
T Consensus       247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l----~---~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL----K---SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC----C---CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC----C---ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            2566788887655433344445677889999999999955321    1   11221  3468899999987  4455545


Q ss_pred             HHHHHHHHhc
Q 014141          377 FELAFYVFEN  386 (430)
Q Consensus       377 ~~l~~~ll~~  386 (430)
                      +..+...+.+
T Consensus       320 l~~l~~~~~~  329 (353)
T 2z80_A          320 IDYLSRWLNK  329 (353)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHh
Confidence            5555444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.57  E-value=7.9e-08  Score=91.15  Aligned_cols=213  Identities=17%  Similarity=0.166  Sum_probs=120.5

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeE
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLS  237 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~  237 (430)
                      +.++++|++|+|.++.+.+-.  . +..+++|+.|.+.+|.....+..-..+++|+.|.+.++. +..+. + ..++|+.
T Consensus       106 ~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDNISDIS--P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYS  181 (347)
T ss_dssp             GTTCTTCSEEECTTSCCCCCG--G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             HcCCCcCCEEECcCCcccCch--h-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence            456677777777777665421  1 567777777777777655444333455677777777665 22111 1 3467777


Q ss_pred             EEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeec
Q 014141          238 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA  315 (430)
Q Consensus       238 L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~  315 (430)
                      |++.+....  ..+..+++|+.+.+..+.....     ..+..+++|+.|.+..+. +........+++|++|+++...-
T Consensus       182 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-----TPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC
T ss_pred             EEccCCcccccccccCCCccceeecccCCCCCC-----chhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCcc
Confidence            777665432  1144566677766664432211     115677788888887765 33222223367777777754322


Q ss_pred             CccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEE
Q 014141          316 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII  395 (430)
Q Consensus       316 ~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i  395 (430)
                      .  .   + ..+..+|+|+.|.+....-    ..   .+.-..+++|+.+.+.+..-.....    ..+.+.+.|+.+.+
T Consensus       256 ~--~---~-~~~~~l~~L~~L~l~~n~l----~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          256 S--D---I-NAVKDLTKLKMLNVGSNQI----SD---ISVLNNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFL  318 (347)
T ss_dssp             C--C---C-GGGTTCTTCCEEECCSSCC----CC---CGGGGGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEEC
T ss_pred             C--C---C-hhHhcCCCcCEEEccCCcc----CC---ChhhcCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEEc
Confidence            1  1   1 2356778888887754311    11   1112345778888887754332222    23446788888877


Q ss_pred             ecCC
Q 014141          396 KPSG  399 (430)
Q Consensus       396 ~~~~  399 (430)
                      ....
T Consensus       319 ~~n~  322 (347)
T 4fmz_A          319 SQNH  322 (347)
T ss_dssp             CSSS
T ss_pred             cCCc
Confidence            6553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.53  E-value=1.4e-08  Score=97.99  Aligned_cols=206  Identities=17%  Similarity=0.147  Sum_probs=103.6

Q ss_pred             CCCCCCCceEEEeeEEEc---c---hh---HHHHhhcCCcccceeeccCCCCc----ee-eEecCCCCcceEEEeecCCc
Q 014141          160 LSGIKSLRSLTLCAVNVT---G---EV---VEFFIHNCPLLENLRITQSPDLL----SL-KVVGSSIPLKCLDIQFCYSI  225 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~---~---~~---l~~ll~~cp~Le~L~L~~~~~~~----~~-~i~~~~~~L~~L~l~~c~~l  225 (430)
                      +..+++|++|+|.++.+.   +   ..   +...+..+++|+.|.|.++..-.    .+ ..-..+++|+.|.+.+|. +
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l  134 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-L  134 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-C
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-C
Confidence            346677888888776432   1   11   23335677888888887764322    01 011234777888777765 2


Q ss_pred             cEE---EE-eC-------------CceeEEEEecceee--------eecCCCCCceEEEEEeecCcc-hhhHHHH-hhcc
Q 014141          226 KEI---EI-SA-------------PNLLSFKYIGQDIN--------LHVGSLPQLVDVVFHVTPMVQ-KMHCIGS-IVSY  278 (430)
Q Consensus       226 ~~i---~i-~~-------------P~L~~L~~~~~~~~--------~~~~~~~~L~~~~i~~~~~~~-~~~~~~~-l~~~  278 (430)
                      ...   .+ .+             |+|++|.+.++.+.        -.+..+++|+.+.+..+.... ....+.. .+..
T Consensus       135 ~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          135 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGG
T ss_pred             CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhc
Confidence            110   00 01             67777777655331        122345677777766443321 1111222 5566


Q ss_pred             CCCceEEEEecceeeec---cccc---CCCCccceEEEEEeecCccchhhHHHHHhh--CCCceEEEEEEeccccccccC
Q 014141          279 LPQLKTLELDGCNEVFA---QFSQ---REFPKLMNLNISFTAANQETLLGLSFIMKA--CPFLEKLVLQIWNNGRRIGKK  350 (430)
Q Consensus       279 ~~~l~~L~l~~~~~~~~---~~l~---~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~--~p~L~~L~l~~~~~~~~~~~~  350 (430)
                      +++|+.|.+..+. +..   ..++   ..+++|++|+|+.+.-.......+...+..  +|+|+.|.+....-    ...
T Consensus       215 ~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i----~~~  289 (386)
T 2ca6_A          215 CQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI----ELD  289 (386)
T ss_dssp             CTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC----BHH
T ss_pred             CCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC----CHH
Confidence            7777777776665 321   1112   125677777764432221222234455544  77777777744211    110


Q ss_pred             cc--cccc--CcCCCccEEEEeeee
Q 014141          351 RH--QISK--HSHQHLKLVELQGFN  371 (430)
Q Consensus       351 ~~--~~~~--~~~~~L~~v~i~~~~  371 (430)
                      +.  .+..  ..+++|+.+.+.+-.
T Consensus       290 g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          290 AVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHHHhcCCCceEEEccCCc
Confidence            10  1111  224677777777643

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.44  E-value=6.5e-08  Score=95.45  Aligned_cols=232  Identities=13%  Similarity=0.092  Sum_probs=104.7

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCC----cccceeeccCCCCc----e-eeEecCCCCcceEEEeecCCccEE---
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCP----LLENLRITQSPDLL----S-LKVVGSSIPLKCLDIQFCYSIKEI---  228 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp----~Le~L~L~~~~~~~----~-~~i~~~~~~L~~L~l~~c~~l~~i---  228 (430)
                      ..+++|++|+|++..+.+..+..+...++    +|++|.|.+|..-.    . ...-..+++|+.|.+.++. +...   
T Consensus        53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~  131 (461)
T 1z7x_W           53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQ  131 (461)
T ss_dssp             HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHH
T ss_pred             HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHH
Confidence            35577777777777776655666555555    67777777774221    0 1111245677777777665 2210   


Q ss_pred             --E----EeCCceeEEEEecceeee--------ecCCCCCceEEEEEeecCcch-hhHHH-HhhccCCCceEEEEeccee
Q 014141          229 --E----ISAPNLLSFKYIGQDINL--------HVGSLPQLVDVVFHVTPMVQK-MHCIG-SIVSYLPQLKTLELDGCNE  292 (430)
Q Consensus       229 --~----i~~P~L~~L~~~~~~~~~--------~~~~~~~L~~~~i~~~~~~~~-~~~~~-~l~~~~~~l~~L~l~~~~~  292 (430)
                        .    -..++|++|.+.++.+..        .+..+++|+.+.+..+..... ...+. .+....++|+.|.+..+. 
T Consensus       132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-  210 (461)
T 1z7x_W          132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-  210 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-
T ss_pred             HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-
Confidence              0    012356777666553211        122345666666554332211 11111 222234566666665554 


Q ss_pred             eeccc---ccC---CCCccceEEEEEeecCccchhhHHH-HHhhCCCceEEEEEEeccccccccCcc--cccc-CcCCCc
Q 014141          293 VFAQF---SQR---EFPKLMNLNISFTAANQETLLGLSF-IMKACPFLEKLVLQIWNNGRRIGKKRH--QISK-HSHQHL  362 (430)
Q Consensus       293 ~~~~~---l~~---~~~~L~~L~l~~~~~~~~~~~~l~~-lL~~~p~L~~L~l~~~~~~~~~~~~~~--~~~~-~~~~~L  362 (430)
                      +....   ++.   .+++|++|+++...-.......+.. +...+++|++|++....    ....+.  .+.. ..+++|
T Consensus       211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~----l~~~~~~~l~~~l~~~~~L  286 (461)
T 1z7x_W          211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG----ITAKGCGDLCRVLRAKESL  286 (461)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC----CCHHHHHHHHHHHHHCTTC
T ss_pred             CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC----CCHHHHHHHHHHHhhCCCc
Confidence            22211   111   1456666665432111111111111 22245666666663321    011000  0111 124567


Q ss_pred             cEEEEeeeecCh-hhHHHHHHHHhcccccccEEEecC
Q 014141          363 KLVELQGFNGRE-IDFELAFYVFENATMLEKMIIKPS  398 (430)
Q Consensus       363 ~~v~i~~~~g~~-~e~~l~~~ll~~a~~Le~m~i~~~  398 (430)
                      +.+.+.+-.-.. .-..+...+..+.+.|+++.+...
T Consensus       287 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  323 (461)
T 1z7x_W          287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  323 (461)
T ss_dssp             CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC
Confidence            776666532111 112333333344457777766544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.42  E-value=3.6e-08  Score=93.00  Aligned_cols=219  Identities=16%  Similarity=0.172  Sum_probs=140.5

Q ss_pred             HHHHhhcCCCceeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCc
Q 014141           88 NKVLELHRGSRINQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLR  167 (430)
Q Consensus        88 ~~~l~~~~~~~l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~  167 (430)
                      ...+.......+..+.+....-.    .+...+..  -.+++.|++....-.               .+|..+.++++|+
T Consensus        72 ~~~l~~~~~~~l~~L~L~~n~l~----~lp~~l~~--l~~L~~L~L~~n~l~---------------~lp~~~~~l~~L~  130 (328)
T 4fcg_A           72 ADLLEDATQPGRVALELRSVPLP----QFPDQAFR--LSHLQHMTIDAAGLM---------------ELPDTMQQFAGLE  130 (328)
T ss_dssp             HHHHHHHTSTTCCEEEEESSCCS----SCCSCGGG--GTTCSEEEEESSCCC---------------CCCSCGGGGTTCS
T ss_pred             HHHHhcccccceeEEEccCCCch----hcChhhhh--CCCCCEEECCCCCcc---------------chhHHHhccCCCC
Confidence            33443333455888888543111    11111111  237888888654221               2445567899999


Q ss_pred             eEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe----------cCCCCcceEEEeecCCccEEE---EeCCc
Q 014141          168 SLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV----------GSSIPLKCLDIQFCYSIKEIE---ISAPN  234 (430)
Q Consensus       168 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~----------~~~~~L~~L~l~~c~~l~~i~---i~~P~  234 (430)
                      +|+|.+..+.  .+..-+..+++|+.|.|.+|...+.+...          ..+++|+.|.+.++. +..+.   -..++
T Consensus       131 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~  207 (328)
T 4fcg_A          131 TLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQN  207 (328)
T ss_dssp             EEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTT
T ss_pred             EEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCC
Confidence            9999999876  34445788999999999998655433211          125899999999886 33331   14578


Q ss_pred             eeEEEEecceee---eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccceE
Q 014141          235 LLSFKYIGQDIN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNL  308 (430)
Q Consensus       235 L~~L~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L  308 (430)
                      |++|++.+..+.   -.+..+++|+.+.+..+.....   +...+..+++|+.|.+..+. . ...+|..   +++|++|
T Consensus       208 L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~---~p~~~~~l~~L~~L~L~~n~-~-~~~~p~~~~~l~~L~~L  282 (328)
T 4fcg_A          208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRN---YPPIFGGRAPLKRLILKDCS-N-LLTLPLDIHRLTQLEKL  282 (328)
T ss_dssp             CCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCB---CCCCTTCCCCCCEEECTTCT-T-CCBCCTTGGGCTTCCEE
T ss_pred             CCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhh---hHHHhcCCCCCCEEECCCCC-c-hhhcchhhhcCCCCCEE
Confidence            999999887442   2456788999999885443321   11345778999999998865 1 1223332   7788888


Q ss_pred             EEEEeecCccchhhHHHHHhhCCCceEEEEE
Q 014141          309 NISFTAANQETLLGLSFIMKACPFLEKLVLQ  339 (430)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~  339 (430)
                      +|+.+.    ....+...+..+|+|+.+.+.
T Consensus       283 ~L~~n~----~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          283 DLRGCV----NLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             ECTTCT----TCCCCCGGGGGSCTTCEEECC
T ss_pred             eCCCCC----chhhccHHHhhccCceEEeCC
Confidence            885432    122345667889999998874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.42  E-value=2.3e-07  Score=87.96  Aligned_cols=211  Identities=13%  Similarity=0.145  Sum_probs=125.8

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCceeE
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  237 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L~~  237 (430)
                      +.++++|++|+|.++.+++-  . -+..+++|++|.+.++.. ..+.....+++|+.|.+.+|.....+.  -..++|++
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l~~n~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~  159 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYLNEDNI-SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNY  159 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEECTTSCC-CCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCE
T ss_pred             hhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEECcCCcc-cCchhhccCCceeEEECCCCCCcccccchhhCCCCcE
Confidence            45677788888777766542  2 256777888888877642 222213345777888877775433322  13567888


Q ss_pred             EEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeec
Q 014141          238 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA  315 (430)
Q Consensus       238 L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~  315 (430)
                      |.+.+....  ..+..+++|+.+.+..+.....     ..+..+++|+.|.+..+. +........+++|++|+++.+.-
T Consensus       160 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI-----SPLASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             EECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EEecCCCcCCchhhccCCCCCEEEccCCccccc-----ccccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCcc
Confidence            877766432  1245677778777764433211     115677888888887765 33222223377888888855422


Q ss_pred             CccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEE
Q 014141          316 NQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMII  395 (430)
Q Consensus       316 ~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i  395 (430)
                      .  ..   .. +..+|+|++|++....-    ..   .+.-..+++|+.+.+.+..-..-      -.+.+.+.|+.+.+
T Consensus       234 ~--~~---~~-~~~l~~L~~L~l~~n~l----~~---~~~~~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          234 T--DL---SP-LANLSQLTWLEIGTNQI----SD---INAVKDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFL  294 (347)
T ss_dssp             C--CC---GG-GTTCTTCCEEECCSSCC----CC---CGGGTTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEEC
T ss_pred             C--CC---cc-hhcCCCCCEEECCCCcc----CC---ChhHhcCCCcCEEEccCCccCCC------hhhcCCCCCCEEEC
Confidence            1  11   12 77889999998855321    11   11234567899998887532221      12567899999988


Q ss_pred             ecCC
Q 014141          396 KPSG  399 (430)
Q Consensus       396 ~~~~  399 (430)
                      ....
T Consensus       295 ~~n~  298 (347)
T 4fmz_A          295 NNNQ  298 (347)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            7654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.39  E-value=2.1e-06  Score=81.52  Aligned_cols=167  Identities=17%  Similarity=0.211  Sum_probs=101.0

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE---E-eCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE---I-SAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~---i-~~P~L~~  237 (430)
                      ++|++|+|.+..+++-. ...+..+++|+.|.+.++. ++.+..  -..+++|+.|++.++. +..+.   + ..++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRITYIS-NSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCcccC-HHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCE
Confidence            67888888877655311 1135678888888888773 333211  1245778888887765 33332   1 3578888


Q ss_pred             EEEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccceEE
Q 014141          238 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLN  309 (430)
Q Consensus       238 L~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L~  309 (430)
                      |++.+..+.     ..+..+++|+.+.+..+.......  ...+..+++|+.|.+..+. +... .+..   +++|++|+
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~  204 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASD-LQSY-EPKSLKSIQNVSHLI  204 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT-CCEE-CTTTTTTCSEEEEEE
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccC--HHHccCCCCCCEEECCCCC-cCcc-CHHHHhccccCCeec
Confidence            888766432     135678889988888653221110  1345678899999998776 3221 2222   56777777


Q ss_pred             EEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          310 ISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       310 l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      ++...-  ..  .-..++..+++|+.|++...
T Consensus       205 l~~n~l--~~--~~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          205 LHMKQH--IL--LLEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             EECSCS--TT--HHHHHHHHTTTEEEEEEESC
T ss_pred             CCCCcc--cc--chhhhhhhcccccEEECCCC
Confidence            755321  11  12345677899999999764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.37  E-value=8.4e-07  Score=87.77  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=18.0

Q ss_pred             cCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEecC
Q 014141          358 SHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPS  398 (430)
Q Consensus       358 ~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~  398 (430)
                      .+++|+.+.+.+-.-.... .     +.+.+.|+++.+...
T Consensus       307 ~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSS
T ss_pred             CCCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCC
Confidence            3456666666653211110 0     346677777766543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.36  E-value=3e-07  Score=90.61  Aligned_cols=173  Identities=18%  Similarity=0.200  Sum_probs=112.4

Q ss_pred             CCceEEEeeEEEcch---hHHHHhhcCCcccceeeccCCCCceee-------EecCCCCcceEEEeecCCccEE------
Q 014141          165 SLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSPDLLSLK-------VVGSSIPLKCLDIQFCYSIKEI------  228 (430)
Q Consensus       165 ~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~~~-------i~~~~~~L~~L~l~~c~~l~~i------  228 (430)
                      +|++|+|.++.+++.   .+...+..+|+|++|.|.++. ++...       +....++|+.|.+.+|. +...      
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHH
Confidence            799999999998874   466778899999999999986 32211       11123579999999885 2211      


Q ss_pred             --EEeCCceeEEEEecceeee----ec-----CCCCCceEEEEEeecCcch-hhHHHHhhccCCCceEEEEecceeeecc
Q 014141          229 --EISAPNLLSFKYIGQDINL----HV-----GSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLELDGCNEVFAQ  296 (430)
Q Consensus       229 --~i~~P~L~~L~~~~~~~~~----~~-----~~~~~L~~~~i~~~~~~~~-~~~~~~l~~~~~~l~~L~l~~~~~~~~~  296 (430)
                        --..|+|++|++.+..+..    .+     ...++|+.+.+..+..... ...+...+..+++|+.|++..+. +...
T Consensus       164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~  242 (461)
T 1z7x_W          164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDV  242 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred             HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChH
Confidence              0124899999988764321    11     1355888888875543321 12234566788999999998775 3321


Q ss_pred             c-------ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          297 F-------SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       297 ~-------l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      .       +...+++|++|+++.+.-.......+...+..+++|++|++..
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence            1       1123678888888554322223333677788899999998854

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.35  E-value=9.5e-07  Score=87.35  Aligned_cols=209  Identities=13%  Similarity=0.119  Sum_probs=106.5

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCceeE
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  237 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L~~  237 (430)
                      +.++++|++|.|.++.+.+-.  . +..+++|+.|.+.+|. ++.+..-..+++|+.|.+.++. +..+.  -..++|+.
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~  160 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQ  160 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSE
T ss_pred             hhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEEECCCCc-cCCChhhccCCcccE
Confidence            445666666666666554321  1 5566666666666653 2222112344666666666553 11111  12356666


Q ss_pred             EEEecceee-eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecC
Q 014141          238 FKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN  316 (430)
Q Consensus       238 L~~~~~~~~-~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  316 (430)
                      |.+.+.... ..+..+++|+.+.+..+.....     ..+..+++|+.|.+..+. +........+++|++|++....-.
T Consensus       161 L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          161 LSFGNQVTDLKPLANLTTLERLDISSNKVSDI-----SVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             EEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             eecCCcccCchhhccCCCCCEEECcCCcCCCC-----hhhccCCCCCEEEecCCc-ccccccccccCCCCEEECCCCCcc
Confidence            665432111 1244566666666654332211     224566777777776655 222111222667777776443211


Q ss_pred             ccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEe
Q 014141          317 QETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK  396 (430)
Q Consensus       317 ~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~  396 (430)
                        ..    ..+..+|+|+.|++....-    ..   ...-..+++|+.+.+.+-.-..-. .     +.+.+.|+.+.+.
T Consensus       235 --~~----~~l~~l~~L~~L~l~~n~l----~~---~~~~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~L~  295 (466)
T 1o6v_A          235 --DI----GTLASLTNLTDLDLANNQI----SN---LAPLSGLTKLTELKLGANQISNIS-P-----LAGLTALTNLELN  295 (466)
T ss_dssp             --CC----GGGGGCTTCSEEECCSSCC----CC---CGGGTTCTTCSEEECCSSCCCCCG-G-----GTTCTTCSEEECC
T ss_pred             --cc----hhhhcCCCCCEEECCCCcc----cc---chhhhcCCCCCEEECCCCccCccc-c-----ccCCCccCeEEcC
Confidence              11    2355677777777744211    00   111234577888888764322111 0     4577889988886


Q ss_pred             cC
Q 014141          397 PS  398 (430)
Q Consensus       397 ~~  398 (430)
                      ..
T Consensus       296 ~n  297 (466)
T 1o6v_A          296 EN  297 (466)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.31  E-value=4e-07  Score=84.96  Aligned_cols=166  Identities=16%  Similarity=0.199  Sum_probs=99.7

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeE
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLS  237 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~  237 (430)
                      +..+++|++|+|.++.+.+-.  . +..+++|+.|.|.++. ++.+..-..+++|+.|.+.++. +..+. + ..++|+.
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  133 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV  133 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred             hhccCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence            456788888888888765421  2 6778888888888775 3333222345778888887765 22221 1 3467777


Q ss_pred             EEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeec
Q 014141          238 FKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAA  315 (430)
Q Consensus       238 L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~  315 (430)
                      |.+.+....  ..+..+++|+.+.+..+.....     .-+..+++|+.|.+..+. +........+++|++|+++...-
T Consensus       134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l  207 (308)
T 1h6u_A          134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-----TPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQI  207 (308)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSCC
T ss_pred             EECCCCccCcCccccCCCCccEEEccCCcCCCC-----hhhcCCCCCCEEECCCCc-cCcChhhcCCCCCCEEEccCCcc
Confidence            777765432  1145667777777765433221     115677888888887765 33222122367788877744321


Q ss_pred             CccchhhHHHHHhhCCCceEEEEEEec
Q 014141          316 NQETLLGLSFIMKACPFLEKLVLQIWN  342 (430)
Q Consensus       316 ~~~~~~~l~~lL~~~p~L~~L~l~~~~  342 (430)
                      .  ..   .. +..+|+|+.|++....
T Consensus       208 ~--~~---~~-l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          208 S--DV---SP-LANTSNLFIVTLTNQT  228 (308)
T ss_dssp             C--BC---GG-GTTCTTCCEEEEEEEE
T ss_pred             C--cc---cc-ccCCCCCCEEEccCCe
Confidence            1  11   11 5778888888887643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.30  E-value=5.5e-08  Score=91.76  Aligned_cols=167  Identities=19%  Similarity=0.277  Sum_probs=90.5

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecCCccEE-----EEeC
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYSIKEI-----EISA  232 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~~l~~i-----~i~~  232 (430)
                      .++++|++|+|.++.+++.... .++.||+|+.|.|.+|..++..   .+...+++|+.|.+.+|..+...     .-..
T Consensus       115 ~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          115 SQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             hhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            3567777777777766544333 3455777777777777544321   11224567777777776333321     1234


Q ss_pred             C-ceeEEEEecce--e-----eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccc--cCCC
Q 014141          233 P-NLLSFKYIGQD--I-----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREF  302 (430)
Q Consensus       233 P-~L~~L~~~~~~--~-----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l--~~~~  302 (430)
                      | +|++|++.++.  .     +..+..+++|+.+.+..+....  +.....+..+++|+.|++..+..+....+  ...+
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence            5 67777766542  1     1223456677777766443111  11113345668888888876642222211  1227


Q ss_pred             CccceEEEEEeecCccchhhHHHHHhhCCCce
Q 014141          303 PKLMNLNISFTAANQETLLGLSFIMKACPFLE  334 (430)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~  334 (430)
                      ++|++|++..+    .....+..+.+.+|.|+
T Consensus       272 ~~L~~L~l~~~----i~~~~~~~l~~~l~~L~  299 (336)
T 2ast_B          272 PTLKTLQVFGI----VPDGTLQLLKEALPHLQ  299 (336)
T ss_dssp             TTCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred             CCCCEEeccCc----cCHHHHHHHHhhCcceE
Confidence            78888877543    22333455556677765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.28  E-value=9.6e-07  Score=82.06  Aligned_cols=210  Identities=15%  Similarity=0.131  Sum_probs=115.7

Q ss_pred             CCCCCCCceEEEeeEEEcch-hHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-----EeCC
Q 014141          160 LSGIKSLRSLTLCAVNVTGE-VVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-----ISAP  233 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~-~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-----i~~P  233 (430)
                      +.++++|++|+|.+..++.. ....-+.++++|+.|.|.++....-...-..+++|+.|.+.++. +..+.     ...+
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~  126 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLR  126 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhcc
Confidence            46788888888887766532 11222446888888888887532211112345788888887653 11111     1346


Q ss_pred             ceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCccce
Q 014141          234 NLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMN  307 (430)
Q Consensus       234 ~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L~~  307 (430)
                      +|++|.+.+....    ..+.++++|+.+.+..+.....  .....+..+++|+.|++..+. +...  .....+++|++
T Consensus       127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  203 (306)
T 2z66_A          127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQV  203 (306)
T ss_dssp             TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG--EECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCE
T ss_pred             CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc--cchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCE
Confidence            7888887766443    1244567788777764332210  011345677788888887765 3221  11112667777


Q ss_pred             EEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCcccccc-CcC-CCccEEEEee--eecChhhHHHHHHH
Q 014141          308 LNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISK-HSH-QHLKLVELQG--FNGREIDFELAFYV  383 (430)
Q Consensus       308 L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~-~~~-~~L~~v~i~~--~~g~~~e~~l~~~l  383 (430)
                      |+++...-.....    ..+..+++|+.|++....-    .  +..+.. ..+ ++|+.+.+.+  +.+......+.+.+
T Consensus       204 L~L~~N~l~~~~~----~~~~~l~~L~~L~L~~N~l----~--~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l  273 (306)
T 2z66_A          204 LNMSHNNFFSLDT----FPYKCLNSLQVLDYSLNHI----M--TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI  273 (306)
T ss_dssp             EECTTSCCSBCCS----GGGTTCTTCCEEECTTSCC----C--BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHH
T ss_pred             EECCCCccCccCh----hhccCcccCCEeECCCCCC----c--ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHH
Confidence            7774432111111    1256778888888844211    1  111111 122 4788888877  55665555565554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.24  E-value=1.4e-06  Score=81.60  Aligned_cols=244  Identities=13%  Similarity=0.106  Sum_probs=144.4

Q ss_pred             CccHhHHHHHHhh--cCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCc
Q 014141          113 KCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPL  190 (430)
Q Consensus       113 ~~~v~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~  190 (430)
                      ...+...+.....  .++++|++....-..     ++         |..+.++++|++|+|.+..+.+.. .  +..+++
T Consensus        19 ~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-----~~---------~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~   81 (317)
T 3o53_A           19 DSSLKQALASLRQSAWNVKELDLSGNPLSQ-----IS---------AADLAPFTKLELLNLSSNVLYETL-D--LESLST   81 (317)
T ss_dssp             TTTHHHHHHHHHTTGGGCSEEECTTSCCCC-----CC---------HHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTT
T ss_pred             ccchhhhHHHHhccCCCCCEEECcCCccCc-----CC---------HHHhhCCCcCCEEECCCCcCCcch-h--hhhcCC
Confidence            3445555554433  367777775432211     11         113357789999999888665321 1  678899


Q ss_pred             ccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-eCCceeEEEEecceee----eecCCCCCceEEEEEeecC
Q 014141          191 LENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPM  265 (430)
Q Consensus       191 Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~  265 (430)
                      |+.|.+.++. ++.+.   ..++|+.|.+.++. +..+.. ..++|+.|.+.+..+.    ..+..+++|+.+.+..+..
T Consensus        82 L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           82 LRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             CCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             CCEEECcCCc-ccccc---CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            9999998884 33322   23789999988876 444433 4588999998876442    2445678888888875443


Q ss_pred             cchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccc
Q 014141          266 VQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGR  345 (430)
Q Consensus       266 ~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~  345 (430)
                      ....  ...+...+++|+.|.+..+. +........+++|++|+++...-.     .+..-+..+++|+.|++....-  
T Consensus       157 ~~~~--~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~-----~l~~~~~~l~~L~~L~L~~N~l--  226 (317)
T 3o53_A          157 DTVN--FAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLRNNKL--  226 (317)
T ss_dssp             CEEE--GGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCC-----EECGGGGGGTTCSEEECTTSCC--
T ss_pred             Cccc--HHHHhhccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCC-----cchhhhcccCcccEEECcCCcc--
Confidence            3211  11344578899999998876 432211112788999988554221     1222366789999999854321  


Q ss_pred             ccccCccccc-cCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEe
Q 014141          346 RIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK  396 (430)
Q Consensus       346 ~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~  396 (430)
                        .   ..+. -..+++|+.+.+.+-.-...   .+...+...+.|+.+.+.
T Consensus       227 --~---~l~~~~~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          227 --V---LIEKALRFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             --C---EECTTCCCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred             --c---chhhHhhcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence              1   1121 23457899988876433321   222344455666655443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.23  E-value=1.1e-06  Score=81.96  Aligned_cols=186  Identities=15%  Similarity=0.158  Sum_probs=123.0

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeEEE
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLSFK  239 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~L~  239 (430)
                      .+++|++|++.++.+..  +. -+..+++|+.|.+.+|.. +.+..-..+++|+.|.+.++. +..+. + ..++|+.|.
T Consensus        39 ~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~  113 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLD  113 (308)
T ss_dssp             HHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEE
T ss_pred             HcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcC-CCChhHccCCCCCEEEccCCc-CCCchhhcCCCCCCEEE
Confidence            57999999999887754  22 267899999999999853 322223456899999999876 33332 1 357899999


Q ss_pred             Eecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCc
Q 014141          240 YIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQ  317 (430)
Q Consensus       240 ~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  317 (430)
                      +.+..+.  -.+..+++|+.+.+..+.....     ..+..+++|+.|.+..+. +........+++|++|+++...-. 
T Consensus       114 l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~-  186 (308)
T 1h6u_A          114 LTSTQITDVTPLAGLSNLQVLYLDLNQITNI-----SPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKIS-  186 (308)
T ss_dssp             CTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-----GGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC-
T ss_pred             CCCCCCCCchhhcCCCCCCEEECCCCccCcC-----ccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccC-
Confidence            8877542  1356788899998886543321     125788899999998876 433222234788888888554221 


Q ss_pred             cchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeee
Q 014141          318 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFN  371 (430)
Q Consensus       318 ~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~  371 (430)
                       ...   . +..+|+|+.|++....-    ..   .+.-..+++|+.+.+.+-.
T Consensus       187 -~~~---~-l~~l~~L~~L~L~~N~l----~~---~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          187 -DIS---P-LASLPNLIEVHLKNNQI----SD---VSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -CCG---G-GGGCTTCCEEECTTSCC----CB---CGGGTTCTTCCEEEEEEEE
T ss_pred             -cCh---h-hcCCCCCCEEEccCCcc----Cc---cccccCCCCCCEEEccCCe
Confidence             111   1 67899999998854321    11   1112356788888888743

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.22  E-value=5.7e-06  Score=83.40  Aligned_cols=221  Identities=14%  Similarity=0.123  Sum_probs=121.0

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE---E-eCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE---I-SAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~---i-~~P~L~~  237 (430)
                      ++|++|+|.+..+++-. ...+.++++|++|.+.++.. +.+..  -..+++|+.|++.++. +..+.   + ..++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEEC-SSTTSSCTTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccC-hhhhhcCCcccEEECCCCCc-CccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcE
Confidence            67777777777554311 11246677777777777642 22211  1245677777777664 22221   1 3467777


Q ss_pred             EEEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccceEE
Q 014141          238 FKYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMNLN  309 (430)
Q Consensus       238 L~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~L~  309 (430)
                      |++.+....     ..+.++++|+.+.+..+.......  ...+..+++|+.|++..+. +.. ..+..   +++|++|+
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~-l~~-~~~~~l~~l~~L~~L~  178 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALS-LRN-YQSQSLKSIRDIHHLT  178 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT-CCE-ECTTTTTTCSEEEEEE
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCc-ccc-cChhhhhccccCceEe
Confidence            777665331     235677888888887654221110  0235678899999998776 322 12332   56677777


Q ss_pred             EEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccc
Q 014141          310 ISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATM  389 (430)
Q Consensus       310 l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~  389 (430)
                      +.....  ...  -..++..+++|+.|++....-...  ........-...+|+.+.+.+-.-......-+...+.+.+.
T Consensus       179 l~~n~~--~~~--~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~  252 (549)
T 2z81_A          179 LHLSES--AFL--LEIFADILSSVRYLELRDTNLARF--QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE  252 (549)
T ss_dssp             EECSBS--TTH--HHHHHHSTTTBSEEEEESCBCTTC--CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred             cccCcc--ccc--chhhHhhcccccEEEccCCccccc--cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence            654321  111  223456789999999976432110  00001112245678888887654333333333334456666


Q ss_pred             cccEEEec
Q 014141          390 LEKMIIKP  397 (430)
Q Consensus       390 Le~m~i~~  397 (430)
                      |+.+.+..
T Consensus       253 L~~l~l~~  260 (549)
T 2z81_A          253 LSEVEFDD  260 (549)
T ss_dssp             CCEEEEES
T ss_pred             cccccccc
Confidence            66666653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.12  E-value=2.7e-05  Score=78.36  Aligned_cols=179  Identities=13%  Similarity=0.133  Sum_probs=121.0

Q ss_pred             CCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCc--eeeEecCCCCcceEEEeecCCccEEE---E-e
Q 014141          158 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL--SLKVVGSSIPLKCLDIQFCYSIKEIE---I-S  231 (430)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~--~~~i~~~~~~L~~L~l~~c~~l~~i~---i-~  231 (430)
                      ..+.++++|++|+|++..+.+- ....+.++++|+.|.+.++....  ....-..+++|+.|.+.++..+..+.   + .
T Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~  146 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG  146 (549)
T ss_dssp             TTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred             hhccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc
Confidence            3567889999999999877643 23346789999999999885321  11223456899999999987555543   1 3


Q ss_pred             CCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeeccc-----ccCC
Q 014141          232 APNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQF-----SQRE  301 (430)
Q Consensus       232 ~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~~-----l~~~  301 (430)
                      .++|+.|++.+....    ..+..+++|+.+.+......    .+. .++..+++|+.|++..+. +....     ....
T Consensus       147 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~  221 (549)
T 2z81_A          147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA----FLLEIFADILSSVRYLELRDTN-LARFQFSPLPVDEV  221 (549)
T ss_dssp             CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST----THHHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCC
T ss_pred             ccccCeeeccCCcccccChhhhhccccCceEecccCccc----ccchhhHhhcccccEEEccCCc-cccccccccchhhh
Confidence            578999999876443    23556778888888754432    222 344678999999998876 33221     1223


Q ss_pred             CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEec
Q 014141          302 FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWN  342 (430)
Q Consensus       302 ~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~  342 (430)
                      +++|++|++....-.......+...+..+++|+.|++....
T Consensus       222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             hhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            78899999866533223333455667888999999987543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.12  E-value=1.7e-06  Score=91.12  Aligned_cols=222  Identities=17%  Similarity=0.126  Sum_probs=106.4

Q ss_pred             CCCCCCCCCCceEEEeeEEEcchhHH-HHhhcCCcccceeeccCCCCcee--eEecCCCCcceEEEeecCCccEEE----
Q 014141          157 GCGLSGIKSLRSLTLCAVNVTGEVVE-FFIHNCPLLENLRITQSPDLLSL--KVVGSSIPLKCLDIQFCYSIKEIE----  229 (430)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~~--~i~~~~~~L~~L~l~~c~~l~~i~----  229 (430)
                      |..+.++++|++|+|+++.+.+.... .-+..|++|+.|+|.+|.....+  .+...+++|+.|++.++. +....    
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~  171 (768)
T 3rgz_A           93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGW  171 (768)
T ss_dssp             CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHH
T ss_pred             chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhh
Confidence            44566778888888887777642211 13567788888888776321111  111234667777766554 11110    


Q ss_pred             ---EeCCceeEEEEecceee--ee-----------------------cCCCCCceEEEEEeecCcchhhHHHHhhccCCC
Q 014141          230 ---ISAPNLLSFKYIGQDIN--LH-----------------------VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQ  281 (430)
Q Consensus       230 ---i~~P~L~~L~~~~~~~~--~~-----------------------~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~  281 (430)
                         -..++|++|++.+....  ..                       ++.+++|+.+.+..+....   .....+..+++
T Consensus       172 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~---~~~~~l~~l~~  248 (768)
T 3rgz_A          172 VLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG---DFSRAISTCTE  248 (768)
T ss_dssp             HHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS---CHHHHTTTCSS
T ss_pred             hhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC---cccHHHhcCCC
Confidence               12244444444433221  11                       3344555555544332221   11233455566


Q ss_pred             ceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHH-HHHhhCCCceEEEEEEeccccccccCccccc-cCcC
Q 014141          282 LKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLS-FIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSH  359 (430)
Q Consensus       282 l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~-~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~  359 (430)
                      |+.|.+..+. +........+++|++|++....-..    .+. .+...|++|++|++....-      .+..+. -..+
T Consensus       249 L~~L~Ls~n~-l~~~~~~~~l~~L~~L~L~~n~l~~----~ip~~~~~~~~~L~~L~Ls~n~l------~~~~p~~~~~l  317 (768)
T 3rgz_A          249 LKLLNISSNQ-FVGPIPPLPLKSLQYLSLAENKFTG----EIPDFLSGACDTLTGLDLSGNHF------YGAVPPFFGSC  317 (768)
T ss_dssp             CCEEECCSSC-CEESCCCCCCTTCCEEECCSSEEEE----SCCCCSCTTCTTCSEEECCSSEE------EECCCGGGGGC
T ss_pred             CCEEECCCCc-ccCccCccccCCCCEEECcCCccCC----ccCHHHHhhcCcCCEEECcCCcC------CCccchHHhcC
Confidence            6666665554 2211111135566666653321100    011 1223356777776643211      011111 2345


Q ss_pred             CCccEEEEeeee--cChhhHHHHHHHHhcccccccEEEecC
Q 014141          360 QHLKLVELQGFN--GREIDFELAFYVFENATMLEKMIIKPS  398 (430)
Q Consensus       360 ~~L~~v~i~~~~--g~~~e~~l~~~ll~~a~~Le~m~i~~~  398 (430)
                      ++|+.+.+.+-.  |.-..     ..+.+.+.|+.+.+...
T Consensus       318 ~~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             TTCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSS
T ss_pred             CCccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCC
Confidence            788888887643  22111     23457888999888654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.10  E-value=2.6e-06  Score=84.76  Aligned_cols=224  Identities=14%  Similarity=0.129  Sum_probs=139.0

Q ss_pred             CccHhHHHHHHhh--cCcEEEEEEcCCCCCCCceeeccccccccCCCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCc
Q 014141          113 KCNITNWVNTAIA--KNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPL  190 (430)
Q Consensus       113 ~~~v~~wl~~~~~--~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~  190 (430)
                      ...+...+.....  .+++.|++....-..     +         .|..+.++++|++|+|+++.+++.. .  +..+++
T Consensus        19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~-----~---------~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~   81 (487)
T 3oja_A           19 DSSLKQALASLRQSAWNVKELDLSGNPLSQ-----I---------SAADLAPFTKLELLNLSSNVLYETL-D--LESLST   81 (487)
T ss_dssp             TTTHHHHHHTTSTTGGGCCEEECCSSCCCC-----C---------CGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTT
T ss_pred             hhhhHHHHHHhcccCCCccEEEeeCCcCCC-----C---------CHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCC
Confidence            3445444443332  267777775542211     1         1224568899999999988765421 1  778999


Q ss_pred             ccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-EeCCceeEEEEeccee----eeecCCCCCceEEEEEeecC
Q 014141          191 LENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFKYIGQDI----NLHVGSLPQLVDVVFHVTPM  265 (430)
Q Consensus       191 Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i~~P~L~~L~~~~~~~----~~~~~~~~~L~~~~i~~~~~  265 (430)
                      |+.|.|.++. ++.+.   ..++|+.|.+.++. +..+. -..|+|+.|.+.+..+    +..++.+++|+.+.++.+..
T Consensus        82 L~~L~Ls~N~-l~~l~---~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (487)
T 3oja_A           82 LRTLDLNNNY-VQELL---VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (487)
T ss_dssp             CCEEECCSSE-EEEEE---ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCC
T ss_pred             CCEEEecCCc-CCCCC---CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCC
Confidence            9999999883 33332   22789999999887 44433 3458899999987744    23456788899888875544


Q ss_pred             cchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccc
Q 014141          266 VQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGR  345 (430)
Q Consensus       266 ~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~  345 (430)
                      ....  ...+...+++|+.|.++.+. +........+++|+.|+|+...-.     ++..-+..+|+|+.|++....-. 
T Consensus       157 ~~~~--~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~l~~L~~L~Ls~N~l~-  227 (487)
T 3oja_A          157 DTVN--FAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLA-----FMGPEFQSAAGVTWISLRNNKLV-  227 (487)
T ss_dssp             CEEE--GGGGGGGTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCC-----EECGGGGGGTTCSEEECTTSCCC-
T ss_pred             CCcC--hHHHhhhCCcccEEecCCCc-cccccccccCCCCCEEECCCCCCC-----CCCHhHcCCCCccEEEecCCcCc-
Confidence            3211  11344578999999998877 433211123789999998654322     22223668899999998553211 


Q ss_pred             ccccCccccc-cCcCCCccEEEEeeeecC
Q 014141          346 RIGKKRHQIS-KHSHQHLKLVELQGFNGR  373 (430)
Q Consensus       346 ~~~~~~~~~~-~~~~~~L~~v~i~~~~g~  373 (430)
                            ..+. -..+++|+.+.+.+-...
T Consensus       228 ------~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          228 ------LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             ------EECTTCCCCTTCCEEECTTCCBC
T ss_pred             ------ccchhhccCCCCCEEEcCCCCCc
Confidence                  1122 234578999888774433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.09  E-value=2.6e-07  Score=97.32  Aligned_cols=213  Identities=18%  Similarity=0.184  Sum_probs=138.7

Q ss_pred             CCCCCCceEEEeeEEEcchhHH--HHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCcee
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVE--FFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLL  236 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~  236 (430)
                      .++++|++|+|+++.+++....  ..+.+|++|+.|.+.++........ ..+++|+.|.+.++.-...+. + ..++|+
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~  226 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQ  226 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCC
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCC
Confidence            6889999999998887654332  2378899999999998853332222 567899999999886322121 2 458999


Q ss_pred             EEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC----CCccceE
Q 014141          237 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE----FPKLMNL  308 (430)
Q Consensus       237 ~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~----~~~L~~L  308 (430)
                      +|++.+....    ..+..+++|+.+.+..+......    .. ..+++|+.|.+..+. +.. .+|..    +++|++|
T Consensus       227 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~----~~-~~l~~L~~L~L~~n~-l~~-~ip~~~~~~~~~L~~L  299 (768)
T 3rgz_A          227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI----PP-LPLKSLQYLSLAENK-FTG-EIPDFLSGACDTLTGL  299 (768)
T ss_dssp             EEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESC----CC-CCCTTCCEEECCSSE-EEE-SCCCCSCTTCTTCSEE
T ss_pred             EEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCcc----Cc-cccCCCCEEECcCCc-cCC-ccCHHHHhhcCcCCEE
Confidence            9999887442    35678899999998865443211    11 278899999998876 332 22322    5899999


Q ss_pred             EEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc--cCcCCCccEEEEeeee--cC-hhhHHHHHHH
Q 014141          309 NISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQGFN--GR-EIDFELAFYV  383 (430)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~~~--g~-~~e~~l~~~l  383 (430)
                      ++....-..    .+...+..+++|++|++....-      .+..+.  -..+++|+.+.+.+..  |. ...       
T Consensus       300 ~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l------~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-------  362 (768)
T 3rgz_A          300 DLSGNHFYG----AVPPFFGSCSLLESLALSSNNF------SGELPMDTLLKMRGLKVLDLSFNEFSGELPES-------  362 (768)
T ss_dssp             ECCSSEEEE----CCCGGGGGCTTCCEEECCSSEE------EEECCHHHHTTCTTCCEEECCSSEEEECCCTT-------
T ss_pred             ECcCCcCCC----ccchHHhcCCCccEEECCCCcc------cCcCCHHHHhcCCCCCEEeCcCCccCccccHH-------
Confidence            985542111    2334577899999999954321      111121  2356789999998743  22 121       


Q ss_pred             Hhccc-ccccEEEecC
Q 014141          384 FENAT-MLEKMIIKPS  398 (430)
Q Consensus       384 l~~a~-~Le~m~i~~~  398 (430)
                      +.+.+ .|+.+.+...
T Consensus       363 l~~l~~~L~~L~Ls~N  378 (768)
T 3rgz_A          363 LTNLSASLLTLDLSSN  378 (768)
T ss_dssp             HHHHTTTCSEEECCSS
T ss_pred             HHhhhcCCcEEEccCC
Confidence            12334 8999888654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.09  E-value=3.2e-06  Score=73.13  Aligned_cols=58  Identities=22%  Similarity=0.197  Sum_probs=31.3

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  223 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~  223 (430)
                      .+++|+.|++.+..+.+  +. -+..+++|+.|.+.+| .++.+..-..+++|+.|.+.++.
T Consensus        42 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~   99 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD   99 (197)
T ss_dssp             HHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT
T ss_pred             hcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc
Confidence            45677777777665543  11 2556677777777766 33332222234555555555443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.09  E-value=4.8e-06  Score=77.84  Aligned_cols=212  Identities=13%  Similarity=0.086  Sum_probs=137.3

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  241 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~  241 (430)
                      .+++|++|+|.+..+++- ....+..+++|+.|.|.++....... -..+++|+.|.+.++. +..+. ..|+|+.|.+.
T Consensus        32 ~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l~  107 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL-VGPSIETLHAA  107 (317)
T ss_dssp             TGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-ECTTCCEEECC
T ss_pred             cCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-CCCCcCEEECC
Confidence            568999999999987653 22446889999999999986433333 4556899999999886 55555 34899999998


Q ss_pred             ccee-eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc---cccCCCCccceEEEEEeecCc
Q 014141          242 GQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQREFPKLMNLNISFTAANQ  317 (430)
Q Consensus       242 ~~~~-~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~  317 (430)
                      +..+ ......+++|+.+.+..+.......   ..+..+++|+.|++..+. +...   .+...+++|++|+++...-..
T Consensus       108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          108 NNNISRVSCSRGQGKKNIYLANNKITMLRD---LDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             SSCCSEEEECCCSSCEEEECCSSCCCSGGG---BCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCccCCcCccccCCCCEEECCCCCCCCccc---hhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc
Confidence            8755 3445567889999887554332111   234677899999998876 3322   222236889999885432211


Q ss_pred             cchhhHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEe
Q 014141          318 ETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK  396 (430)
Q Consensus       318 ~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~  396 (430)
                      ..  .    ...+++|+.|++....-.       ..+. -..+++|+.+.+.+-.-..     +..-+.+.+.|+.+.+.
T Consensus       184 ~~--~----~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~l~~L~~L~l~  245 (317)
T 3o53_A          184 VK--G----QVVFAKLKTLDLSSNKLA-------FMGPEFQSAAGVTWISLRNNKLVL-----IEKALRFSQNLEHFDLR  245 (317)
T ss_dssp             EE--C----CCCCTTCCEEECCSSCCC-------EECGGGGGGTTCSEEECTTSCCCE-----ECTTCCCCTTCCEEECT
T ss_pred             cc--c----ccccccCCEEECCCCcCC-------cchhhhcccCcccEEECcCCcccc-----hhhHhhcCCCCCEEEcc
Confidence            11  1    114789999998653211       1111 2245788888887632111     01123567899999887


Q ss_pred             cCC
Q 014141          397 PSG  399 (430)
Q Consensus       397 ~~~  399 (430)
                      ...
T Consensus       246 ~N~  248 (317)
T 3o53_A          246 GNG  248 (317)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.08  E-value=1.2e-06  Score=87.17  Aligned_cols=160  Identities=14%  Similarity=0.107  Sum_probs=100.7

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEE---EE-eCCce
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEI---EI-SAPNL  235 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i---~i-~~P~L  235 (430)
                      +..+++|++|+|+++.+++      +...|.|+.|.+.+|... .+.. ..+++|+.|.+.++. +..+   .+ ..++|
T Consensus        76 l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~l~-~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L  146 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNIS-RVSC-SRGQGKKNIYLANNK-ITMLRDLDEGCRSRV  146 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCC-CEEE-CCCSSCEEEECCSSC-CCSGGGBCGGGGSSE
T ss_pred             cccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCcCC-CCCc-cccCCCCEEECCCCC-CCCCCchhhcCCCCC
Confidence            4678899999999887764      223488999999888533 2222 345788999888775 2221   22 35788


Q ss_pred             eEEEEecceeee----ec-CCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC---CCCccce
Q 014141          236 LSFKYIGQDINL----HV-GSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EFPKLMN  307 (430)
Q Consensus       236 ~~L~~~~~~~~~----~~-~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~---~~~~L~~  307 (430)
                      +.|++.+..+..    .+ ..+++|+.+.++.+.....     .-...+++|+.|+++.+. +..  +++   .+++|+.
T Consensus       147 ~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~--~~~~~~~l~~L~~  218 (487)
T 3oja_A          147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-----KGQVVFAKLKTLDLSSNK-LAF--MGPEFQSAAGVTW  218 (487)
T ss_dssp             EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-----ECCCCCTTCCEEECCSSC-CCE--ECGGGGGGTTCSE
T ss_pred             CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-----cccccCCCCCEEECCCCC-CCC--CCHhHcCCCCccE
Confidence            888887764421    22 2567888888875543321     112357888999988776 332  222   2677888


Q ss_pred             EEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          308 LNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       308 L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      |+++...     ...+...+..+|+|+.|++...
T Consensus       219 L~Ls~N~-----l~~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          219 ISLRNNK-----LVLIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             EECTTSC-----CCEECTTCCCCTTCCEEECTTC
T ss_pred             EEecCCc-----CcccchhhccCCCCCEEEcCCC
Confidence            8774432     1223344667788988888654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.07  E-value=2.6e-06  Score=78.27  Aligned_cols=62  Identities=19%  Similarity=0.205  Sum_probs=27.1

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeec
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFC  222 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c  222 (430)
                      +..+++|++|+|.+..+++-. ...+.++++|+.|.+.++..++.+..  -..+++|+.|.+.++
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence            345555566655555433210 11234455556665555542322211  112345555555444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=3.4e-07  Score=96.99  Aligned_cols=149  Identities=13%  Similarity=0.124  Sum_probs=89.8

Q ss_pred             CCCCCCCCCCCceEEEeeEEEcch----------------hHHHHhh--cCCcccceeeccCCCCceeeE-ecCCCCcce
Q 014141          156 SGCGLSGIKSLRSLTLCAVNVTGE----------------VVEFFIH--NCPLLENLRITQSPDLLSLKV-VGSSIPLKC  216 (430)
Q Consensus       156 ~p~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~~~i-~~~~~~L~~  216 (430)
                      +|..+.++++|+.|+|.+..++++                .+..-+.  .+++|+.|.|.+|.....+.- -..+++|+.
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            666777888889999888887762                1333344  788888888888864433221 134578888


Q ss_pred             EEEeecCCccE--EE----------EeCCceeEEEEeccee---ee--ecCCCCCceEEEEEeecCcchhhHHHHhhccC
Q 014141          217 LDIQFCYSIKE--IE----------ISAPNLLSFKYIGQDI---NL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYL  279 (430)
Q Consensus       217 L~l~~c~~l~~--i~----------i~~P~L~~L~~~~~~~---~~--~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~  279 (430)
                      |.+.++..+..  +.          ...|+|+.|.+.+..+   +.  .+..+++|+.+.+..+... .+    ..+..+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~l----p~~~~L  594 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HL----EAFGTN  594 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BC----CCCCTT
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cc----hhhcCC
Confidence            88877652221  10          1235788888776643   22  3556777777777644332 11    134566


Q ss_pred             CCceEEEEecceeeecccccCC---CCc-cceEEEEE
Q 014141          280 PQLKTLELDGCNEVFAQFSQRE---FPK-LMNLNISF  312 (430)
Q Consensus       280 ~~l~~L~l~~~~~~~~~~l~~~---~~~-L~~L~l~~  312 (430)
                      ++|+.|.+..+. +.  .+|..   +++ |++|+|+.
T Consensus       595 ~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~  628 (876)
T 4ecn_A          595 VKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSH  628 (876)
T ss_dssp             SEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCS
T ss_pred             CcceEEECcCCc-cc--cchHHHhhccccCCEEECcC
Confidence            777777776665 33  33333   445 66666643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.03  E-value=8e-06  Score=82.62  Aligned_cols=128  Identities=14%  Similarity=0.041  Sum_probs=63.5

Q ss_pred             CCCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-----
Q 014141          155 QSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-----  229 (430)
Q Consensus       155 ~~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-----  229 (430)
                      .+|..+..+ +|++|.+.++.+..  +..  ..+|.|+.|.+.++........ ..+++|+.|.+.++. +..+.     
T Consensus       296 ~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~  368 (570)
T 2z63_A          296 RVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQS  368 (570)
T ss_dssp             SCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHH
T ss_pred             hhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCcccccccc
Confidence            345555566 77777777776542  111  3566777777766643322221 344666666666554 22221     


Q ss_pred             -EeCCceeEEEEeccee---eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          230 -ISAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       230 -i~~P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                       ...++|++|.+.+...   +..+..+++|+.+.+..+.......  ...+..+++|+.|++..+.
T Consensus       369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~  432 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTH  432 (570)
T ss_dssp             HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT--SCTTTTCTTCCEEECTTSC
T ss_pred             ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc--hhhhhcCCCCCEEeCcCCc
Confidence             1245666666655422   1124455666666554322111000  0123455566666665544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.02  E-value=1.8e-06  Score=84.99  Aligned_cols=81  Identities=14%  Similarity=0.045  Sum_probs=35.6

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEE----eC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SA  232 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i----~~  232 (430)
                      .+.++++|++|+|.+..+++-. ...+.++++|+.|.|.++.. +.+..  -..+++|+.|.+.++. +..+.-    ..
T Consensus        94 ~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l  170 (452)
T 3zyi_A           94 TFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRV  170 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-SBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTC
T ss_pred             HcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcC-CccChhhhcccCCCCEEECCCCC-cceeCHhHHhcC
Confidence            3445566666666655443211 11234555666666655531 11110  1123555555555543 232221    23


Q ss_pred             CceeEEEEec
Q 014141          233 PNLLSFKYIG  242 (430)
Q Consensus       233 P~L~~L~~~~  242 (430)
                      |+|+.|++.+
T Consensus       171 ~~L~~L~l~~  180 (452)
T 3zyi_A          171 PSLMRLDLGE  180 (452)
T ss_dssp             TTCCEEECCC
T ss_pred             CcccEEeCCC
Confidence            4555555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.00  E-value=5.2e-06  Score=78.98  Aligned_cols=119  Identities=15%  Similarity=0.078  Sum_probs=68.2

Q ss_pred             ccHhHHHHHHhhcCcEEEEEEcCCCC-CCCceeeccccccccCCCCCCCCCCCCceEEEeeEEEc--------chhHHHH
Q 014141          114 CNITNWVNTAIAKNVRNFELDLSPGT-YDNYYEIPQECYKNLQSGCGLSGIKSLRSLTLCAVNVT--------GEVVEFF  184 (430)
Q Consensus       114 ~~v~~wl~~~~~~~v~~L~l~~~~~~-~~~~~~lp~~~~~~l~~p~~~~~~~~L~~L~L~~~~~~--------~~~l~~l  184 (430)
                      ..+.+++.......+++|.+..+... ......++       .+......|++|+.|.+..+...        ..++..+
T Consensus        95 ~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~-------~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~l  167 (362)
T 2ra8_A           95 NLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIAD-------GIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPV  167 (362)
T ss_dssp             CHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHH-------HHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHH
T ss_pred             HHHHHHhcCCCchhcceEEEcccccCCCcHHHHHH-------HHHHhhhhcchhhheeecCcchhhcccccccccCHHHH
Confidence            34455555444456888888755311 00000000       01112346799999999765332        1247788


Q ss_pred             hhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCC----ccEEE-EeCCceeEEEEe
Q 014141          185 IHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYS----IKEIE-ISAPNLLSFKYI  241 (430)
Q Consensus       185 l~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~----l~~i~-i~~P~L~~L~~~  241 (430)
                      +..+|+|++|.|.++.++....+  .+++|++|.+..|.-    +..+. ...|+|+.|++.
T Consensus       168 l~~~P~L~~L~L~g~~~l~l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNLSIGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHTCTTCCEEEEECCBTCBCCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HhcCCCCcEEEEeCCCCceeccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            99999999999998854332222  247888888876651    11111 145777777753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.00  E-value=8.6e-07  Score=85.37  Aligned_cols=180  Identities=16%  Similarity=0.130  Sum_probs=115.2

Q ss_pred             CCCCCCceEEEeeEEEcch---hHHHHhhcCCcccceeeccCCCCce--eeEec---CC---------CCcceEEEeecC
Q 014141          161 SGIKSLRSLTLCAVNVTGE---VVEFFIHNCPLLENLRITQSPDLLS--LKVVG---SS---------IPLKCLDIQFCY  223 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~---~l~~ll~~cp~Le~L~L~~~~~~~~--~~i~~---~~---------~~L~~L~l~~c~  223 (430)
                      .++++|++|+|+++.+++.   .+...+..|++|+.|.|.+|..-..  ..+..   .+         ++|+.|.+.++.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence            4678899999998888764   3555677899999999988853110  01111   11         688889888776


Q ss_pred             Cc-cEEE------EeCCceeEEEEecceee------e---ecCCCCCceEEEEEeecCcch-hhHHHHhhccCCCceEEE
Q 014141          224 SI-KEIE------ISAPNLLSFKYIGQDIN------L---HVGSLPQLVDVVFHVTPMVQK-MHCIGSIVSYLPQLKTLE  286 (430)
Q Consensus       224 ~l-~~i~------i~~P~L~~L~~~~~~~~------~---~~~~~~~L~~~~i~~~~~~~~-~~~~~~l~~~~~~l~~L~  286 (430)
                      -- ..+.      -..++|++|.+.++.+.      +   .+..+++|+.+.+..+..... ...+...+..+++|+.|.
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            21 1111      14578999988876443      1   345788899998886543211 123345678899999999


Q ss_pred             Eecceeeecc---cccC-----CCCccceEEEEEeecCccchhhHHHHH-hhCCCceEEEEEEe
Q 014141          287 LDGCNEVFAQ---FSQR-----EFPKLMNLNISFTAANQETLLGLSFIM-KACPFLEKLVLQIW  341 (430)
Q Consensus       287 l~~~~~~~~~---~l~~-----~~~~L~~L~l~~~~~~~~~~~~l~~lL-~~~p~L~~L~l~~~  341 (430)
                      +..+. +...   .++.     .+++|++|+|+.+.-.......+...+ .++|+|+.|++...
T Consensus       251 L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          251 LNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             CTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            98876 4322   1222     278899999865432222222355655 67899999998553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.99  E-value=4.1e-06  Score=85.57  Aligned_cols=97  Identities=15%  Similarity=0.158  Sum_probs=46.7

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE------EeC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE------ISA  232 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~------i~~  232 (430)
                      .+..+++|++|++.++.+.  .+..+  .+|.|+.|.+.++.....+.+ ..+++|+.|.+.++. +..+.      ...
T Consensus       302 ~l~~~~~L~~L~l~~n~l~--~lp~~--~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~  375 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQLK--QFPTL--DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNA-LSFSGCCSYSDLGT  375 (606)
T ss_dssp             CCCTTCCCSEEEEESCCCS--SCCCC--CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSC-EEEEEECCHHHHCC
T ss_pred             hccccccCCEEEcccccCc--ccccC--CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCc-cCCCcchhhhhccC
Confidence            4445566666666666552  22222  566666666666644433322 234556666665543 22221      123


Q ss_pred             CceeEEEEecceee---eecCCCCCceEEEEE
Q 014141          233 PNLLSFKYIGQDIN---LHVGSLPQLVDVVFH  261 (430)
Q Consensus       233 P~L~~L~~~~~~~~---~~~~~~~~L~~~~i~  261 (430)
                      ++|++|.+.+....   ..+.++++|+.+.+.
T Consensus       376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~  407 (606)
T 3vq2_A          376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ  407 (606)
T ss_dssp             SCCCEEECCSCSEEEECCCCTTCTTCCEEECT
T ss_pred             CcccEeECCCCccccchhhccCCCCCCeeECC
Confidence            55666655544321   223345555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.99  E-value=1.8e-06  Score=83.14  Aligned_cols=97  Identities=15%  Similarity=0.099  Sum_probs=42.1

Q ss_pred             CceeEEEEecceee-eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCccceEE
Q 014141          233 PNLLSFKYIGQDIN-LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMNLN  309 (430)
Q Consensus       233 P~L~~L~~~~~~~~-~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L~~L~  309 (430)
                      ++|+.|++.+.... +.....++|+.+.+..+.....     ..+..+++|+.|++..+. +...  .....+++|++|+
T Consensus       205 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~  278 (390)
T 3o6n_A          205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-----AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLY  278 (390)
T ss_dssp             SSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEE
T ss_pred             CcceEEECCCCeeeeccccccccccEEECCCCCCccc-----HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEE
Confidence            34555555544331 1222234555555554332211     234556666666666554 2211  0111255566665


Q ss_pred             EEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          310 ISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       310 l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ++...-.     .+......+|+|+.|++..
T Consensus       279 L~~n~l~-----~~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          279 ISNNRLV-----ALNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             CCSSCCC-----EEECSSSCCTTCCEEECCS
T ss_pred             CCCCcCc-----ccCcccCCCCCCCEEECCC
Confidence            5332111     1111224456666666643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.98  E-value=4.1e-06  Score=85.59  Aligned_cols=133  Identities=23%  Similarity=0.221  Sum_probs=67.1

Q ss_pred             CCCCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE---
Q 014141          155 QSGCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE---  229 (430)
Q Consensus       155 ~~p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~---  229 (430)
                      .+|..+.++++|++|+|.++.+.+. ....+..+|+|+.|.+.++.....+..  -..+++|+.|.+.++. +..+.   
T Consensus       292 ~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~  369 (606)
T 3t6q_A          292 ELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCN  369 (606)
T ss_dssp             CCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEEST
T ss_pred             CCChhhcccccCCEEECccCCcCcC-chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcc
Confidence            3455666777777777777765432 112345677777777776643222111  1234667777766654 33332   


Q ss_pred             --E-eCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          230 --I-SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       230 --i-~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                        + ..|+|++|++.+....    ..+..+++|+.+.+..+.......  ...+..+++|+.|++..+.
T Consensus       370 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L~l~~n~  436 (606)
T 3t6q_A          370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA--QSPFQNLHLLKVLNLSHSL  436 (606)
T ss_dssp             TTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT--CCTTTTCTTCCEEECTTCC
T ss_pred             hhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc--chhhhCcccCCEEECCCCc
Confidence              1 2356666666655331    123445666666655332211000  0123455556666655544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.97  E-value=2.9e-06  Score=77.92  Aligned_cols=205  Identities=13%  Similarity=0.059  Sum_probs=117.1

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE---E-eCCcee
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE---I-SAPNLL  236 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~---i-~~P~L~  236 (430)
                      .++|++|+|.+..+++-. ...+..+++|+.|.|.++. ++.+..  -..+++|+.|.+.++..+..+.   + ..++|+
T Consensus        31 ~~~l~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~  108 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (285)
T ss_dssp             CTTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCceEEEeeCCcCCccC-HHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence            479999999988765421 1235789999999999884 333321  1345889999998876444442   1 347888


Q ss_pred             EEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEE
Q 014141          237 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNI  310 (430)
Q Consensus       237 ~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l  310 (430)
                      +|++.+..+.    ..+.++++|+.+.+..+......   ...+..+++|+.|++..+. +....  ....+++|++|++
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP---DDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC---HhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEEC
Confidence            8888776442    12456777887777654332110   0334667788888887665 32111  1112567777776


Q ss_pred             EEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEee--eecChhhHHHHHHH
Q 014141          311 SFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG--FNGREIDFELAFYV  383 (430)
Q Consensus       311 ~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~--~~g~~~e~~l~~~l  383 (430)
                      ....-...    ....+..+++|+.|++....-    ..  ..+. -..+++|+.+.+.+  +.+......+.+.+
T Consensus       185 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l----~~--~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l  250 (285)
T 1ozn_A          185 HQNRVAHV----HPHAFRDLGRLMTLYLFANNL----SA--LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL  250 (285)
T ss_dssp             CSSCCCEE----CTTTTTTCTTCCEEECCSSCC----SC--CCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             CCCccccc----CHhHccCcccccEeeCCCCcC----Cc--CCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence            44321111    123455677888877744211    10  1001 12356777777766  33444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.97  E-value=6.5e-06  Score=80.68  Aligned_cols=206  Identities=16%  Similarity=0.069  Sum_probs=113.4

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEE----eC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SA  232 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i----~~  232 (430)
                      .+.++++|++|+|.+..+..-. ...+.++++|+.|.|.++. ++.+..  -..+++|+.|.+.++. +..+.-    ..
T Consensus        83 ~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l  159 (440)
T 3zyj_A           83 SFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRI  159 (440)
T ss_dssp             TTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTC
T ss_pred             HhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhC
Confidence            4567788888888877654321 1235678888888888773 222211  1244778888887765 343321    34


Q ss_pred             CceeEEEEecc-eee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCcc
Q 014141          233 PNLLSFKYIGQ-DIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKL  305 (430)
Q Consensus       233 P~L~~L~~~~~-~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L  305 (430)
                      |+|+.|++.+. ...    ..+.++++|+.+.+..+.....     .-+..+++|+.|++..+. +...  .....+++|
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L  233 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----PNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHL  233 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-----CCCTTCSSCCEEECTTSC-CCEECTTTTTTCTTC
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-----cccCCCcccCEEECCCCc-cCccChhhhccCccC
Confidence            77888877653 111    1345677777777764432211     124566778888887765 3221  111125667


Q ss_pred             ceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc--cCcCCCccEEEEee--eecChhhHHHHH
Q 014141          306 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS--KHSHQHLKLVELQG--FNGREIDFELAF  381 (430)
Q Consensus       306 ~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~L~~v~i~~--~~g~~~e~~l~~  381 (430)
                      ++|++....-...    ....+..+++|+.|+|....-    .   ..+.  -..+++|+.+.+.+  +..+..-..+..
T Consensus       234 ~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l----~---~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~l~~  302 (440)
T 3zyj_A          234 QKLWMIQSQIQVI----ERNAFDNLQSLVEINLAHNNL----T---LLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSW  302 (440)
T ss_dssp             CEEECTTCCCCEE----CTTSSTTCTTCCEEECTTSCC----C---CCCTTTTSSCTTCCEEECCSSCEECSSTTHHHHH
T ss_pred             CEEECCCCceeEE----ChhhhcCCCCCCEEECCCCCC----C---ccChhHhccccCCCEEEcCCCCccCCCCchHHHH
Confidence            7776633211111    123456778888888744211    1   1111  12357888888877  445554444444


Q ss_pred             HHH
Q 014141          382 YVF  384 (430)
Q Consensus       382 ~ll  384 (430)
                      ++-
T Consensus       303 ~~~  305 (440)
T 3zyj_A          303 WIK  305 (440)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=97.96  E-value=2e-06  Score=87.83  Aligned_cols=123  Identities=11%  Similarity=0.099  Sum_probs=85.0

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-eCCceeEE
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSF  238 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L  238 (430)
                      +..+++|+.|.+.++.+..-  . .+..+++|++|.+.+|.. +.+.-. .+++|+.|.+.++.....+.+ ..|+|++|
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l--~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L  355 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYL--E-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYL  355 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCC--C-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEE
T ss_pred             cccCCCCCEEEecCccchhh--h-hccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEE
Confidence            66789999999998877542  2 467889999999999865 333211 568999999998865554433 56899999


Q ss_pred             EEecceee------eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          239 KYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       239 ~~~~~~~~------~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      ++.+....      ..+..+++|+.+.+..+.....    ...+..+++|+.|.+..+.
T Consensus       356 ~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM----SANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             ECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE----CCCCTTCTTCCEEECTTSE
T ss_pred             ECcCCccCCCcchhhhhccCCcccEeECCCCccccc----hhhccCCCCCCeeECCCCc
Confidence            98877442      2345788899988875432210    0234556677777776655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=97.94  E-value=7.1e-06  Score=80.72  Aligned_cols=123  Identities=18%  Similarity=0.172  Sum_probs=57.8

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEE----eCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI----SAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i----~~P~L~~  237 (430)
                      ++|+.|+|.+..++.-. ...+..+++|+.|.|.++. ++.+...  ..+++|+.|.+.++. +..+.-    ..++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCE
Confidence            56666666666543311 1124556666666666653 2222111  234566666666554 332211    2456666


Q ss_pred             EEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          238 FKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       238 L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      |++.+..+.    ..+..+++|+.+.+..+.....+..  ..+.++++|+.|.+..+.
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~--~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECT--TTTTTCTTCCEEECTTSC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccCh--hhccCCCCCCEEECCCCc
Confidence            666655332    1234556666666553221111000  223455555666555444

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.94  E-value=1.7e-06  Score=77.87  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=32.3

Q ss_pred             CCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 014141           23 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL   56 (430)
Q Consensus        23 is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l   56 (430)
                      |+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999999973

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.92  E-value=4e-06  Score=76.39  Aligned_cols=36  Identities=22%  Similarity=0.625  Sum_probs=34.2

Q ss_pred             ccCCCCCHHHHHHHHhcCChHHHH-HHHHhhhhhhhh
Q 014141           21 DWFSRFPDDILIHIISGLTLKEAA-RTSVLSSRWKYL   56 (430)
Q Consensus        21 d~is~LPdeiL~~Ils~L~~~d~~-rts~vSrrWr~l   56 (430)
                      ..+..||||+|..||++||.++++ |+++|||+|+.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468899999999999999999999 999999999986

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.92  E-value=3.4e-06  Score=77.89  Aligned_cols=148  Identities=22%  Similarity=0.207  Sum_probs=82.0

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEE
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF  238 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L  238 (430)
                      .+..+++|++|+|.+..+++-.  . +..+++|+.|.+.++.. +.+..-..+++|+.|.+.++. +..+.         
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-i~~~~---------  128 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNG-ISDIN---------  128 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSC-CCCCG---------
T ss_pred             hHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcC-CCChhhccCCCCCEEECCCCc-CCCCh---------
Confidence            3457788888888888776522  1 67888888888888742 222222345677777777664 22211         


Q ss_pred             EEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCcc
Q 014141          239 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQE  318 (430)
Q Consensus       239 ~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  318 (430)
                               .+..+++|+.+.+..+.....     ..+..+++|+.|.+..+. +........+++|++|+++...-.  
T Consensus       129 ---------~l~~l~~L~~L~l~~n~l~~~-----~~l~~l~~L~~L~L~~N~-l~~~~~l~~l~~L~~L~L~~N~i~--  191 (291)
T 1h6t_A          129 ---------GLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHIS--  191 (291)
T ss_dssp             ---------GGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC--
T ss_pred             ---------hhcCCCCCCEEEccCCcCCcc-----hhhccCCCCCEEEccCCc-cccchhhcCCCccCEEECCCCcCC--
Confidence                     122344444444443222111     234566777777776665 332211223667777776443211  


Q ss_pred             chhhHHHHHhhCCCceEEEEEEe
Q 014141          319 TLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       319 ~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                         .+.. +..+++|+.|++...
T Consensus       192 ---~l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          192 ---DLRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             ---BCGG-GTTCTTCSEEEEEEE
T ss_pred             ---CChh-hccCCCCCEEECcCC
Confidence               1112 566777777777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.92  E-value=8.8e-06  Score=80.53  Aligned_cols=174  Identities=22%  Similarity=0.174  Sum_probs=77.0

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEEE---eCCc
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIEI---SAPN  234 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~i---~~P~  234 (430)
                      .+.++++|++|+|.++.++.- ....+..+++|+.|.|.++....... .-..+++|+.|.+.++..+..+.-   ..++
T Consensus       147 ~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  225 (477)
T 2id5_A          147 AFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN  225 (477)
T ss_dssp             SSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC
T ss_pred             hccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc
Confidence            344555555555555544321 12234455666666665553211100 011335566666665554333321   1235


Q ss_pred             eeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceE
Q 014141          235 LLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNL  308 (430)
Q Consensus       235 L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L  308 (430)
                      |++|++.+..+.    ..+..+++|+.+.+..+......   ...+..+++|+.|.+..+. +....  ....+++|+.|
T Consensus       226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  301 (477)
T 2id5_A          226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE---GSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVL  301 (477)
T ss_dssp             CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC---TTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEE
T ss_pred             ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC---hhhccccccCCEEECCCCc-cceECHHHhcCcccCCEE
Confidence            666666555331    12345566666665543322100   0223455666666665554 22110  01124556666


Q ss_pred             EEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          309 NISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       309 ~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      +|+...-....    ...+..+++|+.|++...
T Consensus       302 ~L~~N~l~~~~----~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          302 NVSGNQLTTLE----ESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             ECCSSCCSCCC----GGGBSCGGGCCEEECCSS
T ss_pred             ECCCCcCceeC----HhHcCCCcccCEEEccCC
Confidence            65432111111    123445566666666543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=5.5e-06  Score=69.75  Aligned_cols=38  Identities=5%  Similarity=0.156  Sum_probs=17.7

Q ss_pred             CCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCc
Q 014141          165 SLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL  203 (430)
Q Consensus       165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~  203 (430)
                      +|+.|+|+++.+++..+..+ ++|++|+.|.|.+|..++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~It   99 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIE   99 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCC
T ss_pred             eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccC
Confidence            34445555444444444332 345555555555554443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.91  E-value=5.5e-06  Score=81.37  Aligned_cols=62  Identities=23%  Similarity=0.158  Sum_probs=32.9

Q ss_pred             HhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          274 SIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       274 ~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ..+..+++|+.|++..+. +....  ....+++|++|+++...-...    ....+..+++|++|++..
T Consensus       293 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          293 SVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLGSI----DSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             TTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEE----CGGGGTTCTTCCEEECCS
T ss_pred             hhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCCccCCc----ChhHhcCcccCCEEECCC
Confidence            335667778888776665 32111  111256677777644321111    123456677777777754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.91  E-value=1.8e-06  Score=72.66  Aligned_cols=66  Identities=14%  Similarity=0.189  Sum_probs=53.5

Q ss_pred             CCCCCCceEEEeeE-EEcchhHHHHhhc---CCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCcc
Q 014141          161 SGIKSLRSLTLCAV-NVTGEVVEFFIHN---CPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIK  226 (430)
Q Consensus       161 ~~~~~L~~L~L~~~-~~~~~~l~~ll~~---cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~  226 (430)
                      .++++|++|+|.+| .++|..+..+-..   ||.|++|+|.+|..+++-.+.  +.+++|++|.+.+|+.+.
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            47899999999999 5899989887763   899999999999988753222  356889999998887544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.90  E-value=2.4e-06  Score=87.27  Aligned_cols=81  Identities=19%  Similarity=0.130  Sum_probs=39.8

Q ss_pred             hccCCCceEEEEecceeeecc-cccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCcccc
Q 014141          276 VSYLPQLKTLELDGCNEVFAQ-FSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI  354 (430)
Q Consensus       276 ~~~~~~l~~L~l~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~  354 (430)
                      +..+++|+.|.+..+. +... .....+++|+.|+|+...-.     .+..-+..+|+|+.|++....-    ...    
T Consensus       274 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~l~-----~i~~~~~~l~~L~~L~L~~N~l----~~~----  339 (597)
T 3oja_B          274 FVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSI----VTL----  339 (597)
T ss_dssp             GTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSCC----CCC----
T ss_pred             hcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCCCCCC-----ccCcccccCCCCCEEECCCCCC----CCc----
Confidence            3455666666665554 2211 11112566777766443211     2222345667777777744221    000    


Q ss_pred             ccCcCCCccEEEEeee
Q 014141          355 SKHSHQHLKLVELQGF  370 (430)
Q Consensus       355 ~~~~~~~L~~v~i~~~  370 (430)
                      ....+++|+.+.+.+-
T Consensus       340 ~~~~~~~L~~L~l~~N  355 (597)
T 3oja_B          340 KLSTHHTLKNLTLSHN  355 (597)
T ss_dssp             CCCTTCCCSEEECCSS
T ss_pred             ChhhcCCCCEEEeeCC
Confidence            1234567888888763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=97.88  E-value=1.9e-05  Score=75.95  Aligned_cols=191  Identities=17%  Similarity=0.140  Sum_probs=111.9

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe------------------cCCCCcceEEEee
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV------------------GSSIPLKCLDIQF  221 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~------------------~~~~~L~~L~l~~  221 (430)
                      +.++++|++|+|.+..+..- ....+..+++|+.|.+.++.. +.+.+.                  ...++|+.|.+.+
T Consensus       137 ~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~  214 (390)
T 3o6n_A          137 FHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH  214 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCSSCC-SBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCS
T ss_pred             hcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCCCcC-CccccccccccceeecccccccccCCCCcceEEECCC
Confidence            35667777777776655431 112245667777777766532 111110                  0114566666655


Q ss_pred             cCCccEEEE-eCCceeEEEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc-
Q 014141          222 CYSIKEIEI-SAPNLLSFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF-  297 (430)
Q Consensus       222 c~~l~~i~i-~~P~L~~L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~-  297 (430)
                      +. +..+.. ..++|+.|.+.+....  -.+..+++|+.+.+..+......   ...+..+++|+.|.+..+. +.... 
T Consensus       215 n~-l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~-l~~~~~  289 (390)
T 3o6n_A          215 NS-INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM---YHPFVKMQRLERLYISNNR-LVALNL  289 (390)
T ss_dssp             SC-CCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE---SGGGTTCSSCCEEECCSSC-CCEEEC
T ss_pred             Ce-eeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcC---hhHccccccCCEEECCCCc-CcccCc
Confidence            54 333322 2468999998877442  23567889999998865433211   1445778999999998876 43211 


Q ss_pred             ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeee
Q 014141          298 SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGF  370 (430)
Q Consensus       298 l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~  370 (430)
                      ....+++|++|+++...-.     .+..-+..+|+|+.|++....-    ...    ....+++|+.+.+.+-
T Consensus       290 ~~~~l~~L~~L~L~~n~l~-----~~~~~~~~l~~L~~L~L~~N~i----~~~----~~~~~~~L~~L~l~~N  349 (390)
T 3o6n_A          290 YGQPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSI----VTL----KLSTHHTLKNLTLSHN  349 (390)
T ss_dssp             SSSCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSCC----CCC----CCCTTCCCSEEECCSS
T ss_pred             ccCCCCCCCEEECCCCcce-----ecCccccccCcCCEEECCCCcc----cee----CchhhccCCEEEcCCC
Confidence            1123789999998654221     2233356789999999965321    111    1234578999988873

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.88  E-value=2.9e-05  Score=76.82  Aligned_cols=39  Identities=18%  Similarity=0.142  Sum_probs=18.3

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (430)
                      +.++++|++|+|.+..++.-. ...+.++++|+.|.|.++
T Consensus        76 ~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n  114 (477)
T 2id5_A           76 FNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISEN  114 (477)
T ss_dssp             TTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTS
T ss_pred             hhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCC
Confidence            345555555555554443210 112344555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.87  E-value=7.2e-06  Score=80.81  Aligned_cols=160  Identities=19%  Similarity=0.132  Sum_probs=94.1

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-eCCceeEE
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSF  238 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L  238 (430)
                      +..+++|++|+|.+..+++-.    +..+++|+.|.+.++. ++.+.+ ..+++|+.|.+.++. +..+.+ ..++|+.|
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~~L~L~~N~-l~~l~~-~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L  153 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNLD----VTPLTKLTYLNCDTNK-LTKLDV-SQNPLLTYLNCARNT-LTEIDVSHNTQLTEL  153 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECCSSC-CSCCCC-TTCTTCCEEECTTSC-CSCCCCTTCTTCCEE
T ss_pred             cccCCCCCEEECcCCCCceee----cCCCCcCCEEECCCCc-CCeecC-CCCCcCCEEECCCCc-cceeccccCCcCCEE
Confidence            456677777777776665421    5567777777777663 232332 344667777776654 333333 34667777


Q ss_pred             EEecce-e-eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecC
Q 014141          239 KYIGQD-I-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN  316 (430)
Q Consensus       239 ~~~~~~-~-~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  316 (430)
                      .+.+.. . .+.+..+++|+.+.+..+.... .    . +..+++|+.|.+..+. +.... ...+++|++|+++...-.
T Consensus       154 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l----~-l~~l~~L~~L~l~~N~-l~~~~-l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITE-L----D-VSQNKLLNRLNCDTNN-ITKLD-LNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             ECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-C----C-CTTCTTCCEEECCSSC-CSCCC-CTTCTTCSEEECCSSCCS
T ss_pred             ECCCCCcccccccccCCcCCEEECCCCccce-e----c-cccCCCCCEEECcCCc-CCeec-cccCCCCCEEECcCCccc
Confidence            766552 1 2345566777777776443322 1    1 4567788888887665 33221 123678888887553221


Q ss_pred             ccchhhHHHHHhhCCCceEEEEEEe
Q 014141          317 QETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       317 ~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                           .+.  +..+++|+.|++...
T Consensus       226 -----~ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          226 -----EID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             -----CCC--CTTCTTCSEEECCSS
T ss_pred             -----ccC--ccccCCCCEEEeeCC
Confidence                 122  668899999988653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.87  E-value=1e-05  Score=74.59  Aligned_cols=79  Identities=16%  Similarity=0.158  Sum_probs=53.1

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCceeE
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLS  237 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L~~  237 (430)
                      +.++++|+.|.|.+..+++  +.. +..+++|+.|.+.++. ++.+..-..+++|+.|.+.++. +..+.  -..++|+.
T Consensus        86 l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~  160 (291)
T 1h6t_A           86 LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDT  160 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             cccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCc-CCcchhhccCCCCCE
Confidence            5689999999999998765  222 7889999999999985 3333222355788888888775 32221  02345555


Q ss_pred             EEEecc
Q 014141          238 FKYIGQ  243 (430)
Q Consensus       238 L~~~~~  243 (430)
                      |.+.+.
T Consensus       161 L~L~~N  166 (291)
T 1h6t_A          161 LSLEDN  166 (291)
T ss_dssp             EECCSS
T ss_pred             EEccCC
Confidence            555444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=97.87  E-value=2.6e-06  Score=83.54  Aligned_cols=61  Identities=16%  Similarity=0.231  Sum_probs=24.3

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeec
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFC  222 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c  222 (430)
                      .++++|++|+|.+..+..- -...+..+++|+.|.|.++..+..+...  ..+++|+.|.+.++
T Consensus       133 ~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             hccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            3444555555544433210 0112334455555555444433332211  12344555554444

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.83  E-value=7.8e-07  Score=91.59  Aligned_cols=173  Identities=11%  Similarity=0.121  Sum_probs=101.0

Q ss_pred             CCCCCCCCCCCceEEEeeEEEcch----------------hHHHHhh--cCCcccceeeccCCCCceeeE-ecCCCCcce
Q 014141          156 SGCGLSGIKSLRSLTLCAVNVTGE----------------VVEFFIH--NCPLLENLRITQSPDLLSLKV-VGSSIPLKC  216 (430)
Q Consensus       156 ~p~~~~~~~~L~~L~L~~~~~~~~----------------~l~~ll~--~cp~Le~L~L~~~~~~~~~~i-~~~~~~L~~  216 (430)
                      +|..+.++++|++|+|.+..+++.                .+..-+.  .+++|+.|.|.+|.....+.- -..+++|+.
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            566777889999999998887662                1344455  788899999988864433221 124578888


Q ss_pred             EEEeecCCccE--EE--Ee-------CCceeEEEEeccee---ee--ecCCCCCceEEEEEeecCcchhhHHHHhhccCC
Q 014141          217 LDIQFCYSIKE--IE--IS-------APNLLSFKYIGQDI---NL--HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLP  280 (430)
Q Consensus       217 L~l~~c~~l~~--i~--i~-------~P~L~~L~~~~~~~---~~--~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~  280 (430)
                      |.+.++..+..  +.  +.       .++|+.|.+.+..+   +.  .++.+++|+.+.+..+.....+.    -+..++
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip----~~~~l~  353 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP----AFGSEI  353 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC----CCEEEE
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh----hhCCCC
Confidence            88887752221  11  11       27888888876643   22  45677788888776544331111    234556


Q ss_pred             CceEEEEecceeeecccccCC---CCc-cceEEEEEeecCccchhhHHHHHhh--CCCceEEEEEE
Q 014141          281 QLKTLELDGCNEVFAQFSQRE---FPK-LMNLNISFTAANQETLLGLSFIMKA--CPFLEKLVLQI  340 (430)
Q Consensus       281 ~l~~L~l~~~~~~~~~~l~~~---~~~-L~~L~l~~~~~~~~~~~~l~~lL~~--~p~L~~L~l~~  340 (430)
                      +|+.|.+..+. +.  .+|..   +++ |++|+++...-.     .+...+..  +++|+.|++..
T Consensus       354 ~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l~-----~lp~~~~~~~l~~L~~L~Ls~  411 (636)
T 4eco_A          354 KLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKLK-----YIPNIFDAKSVSVMSAIDFSY  411 (636)
T ss_dssp             EESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCCS-----SCCSCCCTTCSSCEEEEECCS
T ss_pred             CCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcCc-----ccchhhhhcccCccCEEECcC
Confidence            77777776665 33  33333   445 666666433211     12222222  23677776644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.83  E-value=2.2e-06  Score=79.84  Aligned_cols=190  Identities=18%  Similarity=0.075  Sum_probs=97.0

Q ss_pred             cHhHHHHHHhhcCcEEEEEEcCCCCCCCceeeccccccccCCCCCC--CCCCCCceEEEeeEEEcch--hHH-HHhhcCC
Q 014141          115 NITNWVNTAIAKNVRNFELDLSPGTYDNYYEIPQECYKNLQSGCGL--SGIKSLRSLTLCAVNVTGE--VVE-FFIHNCP  189 (430)
Q Consensus       115 ~v~~wl~~~~~~~v~~L~l~~~~~~~~~~~~lp~~~~~~l~~p~~~--~~~~~L~~L~L~~~~~~~~--~l~-~ll~~cp  189 (430)
                      .+..........++++|++....-..              ..|..+  ..+++|++|+|.+..+.+.  .+. .-+..+|
T Consensus        80 ~~~~~~~~~~~~~L~~L~l~~n~l~~--------------~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~  145 (310)
T 4glp_A           80 LLVGALRVLAYSRLKELTLEDLKITG--------------TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP  145 (310)
T ss_dssp             HHHHHHHHHHHSCCCEEEEESCCCBS--------------CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred             HHHHHHHhcccCceeEEEeeCCEecc--------------chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence            44555555555679999987653221              112223  5789999999999988752  122 2244899


Q ss_pred             cccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeecCcch
Q 014141          190 LLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQK  268 (430)
Q Consensus       190 ~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~  268 (430)
                      +|+.|.|.++...... ..-..+++|+.|+++++.-.....+             .....+..+++|+.+.+..+.....
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------------~~~~~~~~l~~L~~L~Ls~N~l~~l  212 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGL-------------MAALCPHKFPAIQNLALRNTGMETP  212 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHH-------------HTTSCTTSSCCCCSCBCCSSCCCCH
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhh-------------hHHHhhhcCCCCCEEECCCCCCCch
Confidence            9999999988542211 1112346777777776641110000             0001123445555555543332211


Q ss_pred             hhHHHHhhccCCCceEEEEecceeeecccccC---CC---CccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          269 MHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR---EF---PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       269 ~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~---~~---~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ......++..+++|+.|+++.+. +.... |.   .+   ++|++|+++...-..     +..-+  +++|+.|++..
T Consensus       213 ~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~-p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~--~~~L~~L~Ls~  281 (310)
T 4glp_A          213 TGVCAALAAAGVQPHSLDLSHNS-LRATV-NPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGL--PAKLRVLDLSS  281 (310)
T ss_dssp             HHHHHHHHHHTCCCSSEECTTSC-CCCCC-CSCCSSCCCCTTCCCEECCSSCCCS-----CCSCC--CSCCSCEECCS
T ss_pred             HHHHHHHHhcCCCCCEEECCCCC-CCccc-hhhHHhccCcCcCCEEECCCCCCCc-----hhhhh--cCCCCEEECCC
Confidence            11111345666777777776665 32211 11   12   567777764432111     11111  26777777744

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=97.83  E-value=1.5e-05  Score=80.66  Aligned_cols=126  Identities=15%  Similarity=0.078  Sum_probs=68.1

Q ss_pred             CCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-EeCCce
Q 014141          157 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNL  235 (430)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i~~P~L  235 (430)
                      |..+..+++|++|++.++.+..  +...+..+ .|+.|.+.+|... .+.. ..+++|+.|.+.++.....+. ...|+|
T Consensus       275 ~~~~~~l~~L~~L~l~~~~l~~--l~~~~~~~-~L~~L~l~~n~~~-~l~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~L  349 (570)
T 2z63_A          275 IDLFNCLTNVSSFSLVSVTIER--VKDFSYNF-GWQHLELVNCKFG-QFPT-LKLKSLKRLTFTSNKGGNAFSEVDLPSL  349 (570)
T ss_dssp             TTTTGGGTTCSEEEEESCEECS--CCBCCSCC-CCSEEEEESCBCS-SCCB-CBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred             hhhhcCcCcccEEEecCccchh--hhhhhccC-CccEEeeccCccc-ccCc-ccccccCEEeCcCCccccccccccCCCC
Confidence            3445566777777777776642  33334455 7777777766432 2211 234667777776655222211 345677


Q ss_pred             eEEEEecceee------eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          236 LSFKYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       236 ~~L~~~~~~~~------~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      +.|++.+....      ..+.++++|+.+.+..+......    .-+..+++|+.|.+..+.
T Consensus       350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~l~~L~~L~l~~n~  407 (570)
T 2z63_A          350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS----SNFLGLEQLEHLDFQHSN  407 (570)
T ss_dssp             CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE----EEEETCTTCCEEECTTSE
T ss_pred             CEEeCcCCccCccccccccccccCccCEEECCCCcccccc----ccccccCCCCEEEccCCc
Confidence            77776655332      12345667777666543322100    114566777777776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.82  E-value=9.4e-06  Score=82.73  Aligned_cols=123  Identities=19%  Similarity=0.215  Sum_probs=67.0

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCcee
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLL  236 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L~  236 (430)
                      .+..+++|+.|+|.++.+.+-.-   +..+++|+.|.|.+|. +..+..-..+++|+.|.+.++. +..+.  ...|+|+
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~  134 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLE  134 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCS
T ss_pred             HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC-CCCCccccCCCccC
Confidence            34577888888888887654221   6788888888888874 2332222345778888877765 22221  1235666


Q ss_pred             EEEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          237 SFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       237 ~L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      .|.+.++.+.  -.+..+++|+.+.+..+......    . +..+++|+.|.|..+.
T Consensus       135 ~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~----~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          135 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV----P-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             EEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCG----G-GTTCTTCCEEECCSSC
T ss_pred             EEECCCCccCCchhhcccCCCCEEECcCCcCCCch----h-hccCCCCCEEECcCCC
Confidence            6666554331  12334455555555433222111    1 3445555555554443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.82  E-value=3.5e-06  Score=70.78  Aligned_cols=126  Identities=20%  Similarity=0.176  Sum_probs=64.6

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccE-EE--E-eCCceeEE
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKE-IE--I-SAPNLLSF  238 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~-i~--i-~~P~L~~L  238 (430)
                      .++|++|+|.++.+++..+...+..+++|+.|.+.+|. ++.+..-..+++|+.|.+.++. +.. +.  + ..|+|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEE
Confidence            36777777777777644455556677778888877775 3333222345667777777665 221 11  1 24566666


Q ss_pred             EEecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecc
Q 014141          239 KYIGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGC  290 (430)
Q Consensus       239 ~~~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~  290 (430)
                      ++.+..+.     ..+..+++|+.+.+..+.......+....+..+++|+.|++..+
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n  157 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR  157 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence            66554321     12334455555555433322211111123444555555554443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.82  E-value=4.1e-06  Score=78.15  Aligned_cols=40  Identities=23%  Similarity=0.115  Sum_probs=20.5

Q ss_pred             CCCCCCceEEEeeEEEcch--hHHHHhh-cCCcccceeeccCC
Q 014141          161 SGIKSLRSLTLCAVNVTGE--VVEFFIH-NCPLLENLRITQSP  200 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~--~l~~ll~-~cp~Le~L~L~~~~  200 (430)
                      ..+++|++|+|.+..+++.  .+..+.. ..++|+.|.|.++.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~  160 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH  160 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence            4556666666666655432  2222211 13666666666553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.80  E-value=6.9e-06  Score=76.19  Aligned_cols=216  Identities=14%  Similarity=0.081  Sum_probs=133.1

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee----EecCCCCcceEEEeecCCccEEE---EeCCce
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK----VVGSSIPLKCLDIQFCYSIKEIE---ISAPNL  235 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~----i~~~~~~L~~L~l~~c~~l~~i~---i~~P~L  235 (430)
                      .++|++|+|.+..++.- -...+..+++|+.|.|.++.. +.+.    ....+++|+.|.+.++. +..+.   ...++|
T Consensus        27 ~~~l~~L~L~~n~l~~i-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L  103 (306)
T 2z66_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNGL-SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL  103 (306)
T ss_dssp             CTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred             CCCCCEEECCCCccCcc-CHhHhhccccCCEEECCCCcc-CcccCcccccccccccCEEECCCCc-cccChhhcCCCCCC
Confidence            37899999999877631 123467899999999998853 2221    11246899999999886 44432   256899


Q ss_pred             eEEEEecceeee-----ecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccce
Q 014141          236 LSFKYIGQDINL-----HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMN  307 (430)
Q Consensus       236 ~~L~~~~~~~~~-----~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~  307 (430)
                      ++|.+.+.....     .+..+++|+.+.+..+.....   ....+..+++|+.|.+..+. +.....+..   +++|++
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA---FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC---STTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCE
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc---chhhcccCcCCCEEECCCCc-cccccchhHHhhCcCCCE
Confidence            999998775431     355778899988875433211   11446778999999998876 443233433   678888


Q ss_pred             EEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcc
Q 014141          308 LNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENA  387 (430)
Q Consensus       308 L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a  387 (430)
                      |+++...-..  .  ....+..+|+|++|++....-    ..... ..-..+++|+.+.+.+-.-.....    ..+.+.
T Consensus       180 L~Ls~n~l~~--~--~~~~~~~l~~L~~L~L~~N~l----~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~  246 (306)
T 2z66_A          180 LDLSQCQLEQ--L--SPTAFNSLSSLQVLNMSHNNF----FSLDT-FPYKCLNSLQVLDYSLNHIMTSKK----QELQHF  246 (306)
T ss_dssp             EECTTSCCCE--E--CTTTTTTCTTCCEEECTTSCC----SBCCS-GGGTTCTTCCEEECTTSCCCBCSS----SSCCCC
T ss_pred             EECCCCCcCC--c--CHHHhcCCCCCCEEECCCCcc----CccCh-hhccCcccCCEeECCCCCCcccCH----HHHHhh
Confidence            8885432111  1  124567889999999854321    11000 011245789999887633111000    012233


Q ss_pred             -cccccEEEecC
Q 014141          388 -TMLEKMIIKPS  398 (430)
Q Consensus       388 -~~Le~m~i~~~  398 (430)
                       +.|+.+.+...
T Consensus       247 ~~~L~~L~L~~N  258 (306)
T 2z66_A          247 PSSLAFLNLTQN  258 (306)
T ss_dssp             CTTCCEEECTTC
T ss_pred             hccCCEEEccCC
Confidence             47888888654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.80  E-value=4.7e-06  Score=79.47  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=18.5

Q ss_pred             CCceEEEeeEEEcch---hHHHHhhcC-CcccceeeccCC
Q 014141          165 SLRSLTLCAVNVTGE---VVEFFIHNC-PLLENLRITQSP  200 (430)
Q Consensus       165 ~L~~L~L~~~~~~~~---~l~~ll~~c-p~Le~L~L~~~~  200 (430)
                      +|++|+|+++.+++.   .+..++..+ +.|++|.|.+|.
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence            566666665555442   233333333 566666665553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.80  E-value=1.8e-06  Score=80.63  Aligned_cols=192  Identities=20%  Similarity=0.144  Sum_probs=117.7

Q ss_pred             CCCCCceEEEeeEEEcchhHHHH-hhcCCcccceeeccCCCCceeeEecC-----CCCcceEEEeecCCccEEE----Ee
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFF-IHNCPLLENLRITQSPDLLSLKVVGS-----SIPLKCLDIQFCYSIKEIE----IS  231 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~l-l~~cp~Le~L~L~~~~~~~~~~i~~~-----~~~L~~L~l~~c~~l~~i~----i~  231 (430)
                      ++++|++|+|.+..+++..-..+ +..+++|+.|.|.++........-..     .++|+.|.+.++. +..+.    -.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence            57999999999998875332222 37899999999998753221100011     2789999999876 33322    14


Q ss_pred             CCceeEEEEeccee--------eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc-ccC--
Q 014141          232 APNLLSFKYIGQDI--------NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF-SQR--  300 (430)
Q Consensus       232 ~P~L~~L~~~~~~~--------~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~-l~~--  300 (430)
                      .++|+.|++.+...        .+.+..+++|+.+.+..+...........++..+++|+.|+++.+. +.... .+.  
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~  250 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCD  250 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhh
Confidence            68999999987742        1223788999999988654432112222566788999999998876 44322 111  


Q ss_pred             CCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEee
Q 014141          301 EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQG  369 (430)
Q Consensus       301 ~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  369 (430)
                      .+++|++|+++...-.     .+..-+.  ++|+.|++....-    ...   +.-..+++|+.+.+.+
T Consensus       251 ~l~~L~~L~Ls~N~l~-----~ip~~~~--~~L~~L~Ls~N~l----~~~---p~~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLK-----QVPKGLP--AKLSVLDLSYNRL----DRN---PSPDELPQVGNLSLKG  305 (312)
T ss_dssp             CCTTCCEEECTTSCCS-----SCCSSCC--SEEEEEECCSSCC----CSC---CCTTTSCEEEEEECTT
T ss_pred             hcCCCCEEECCCCccC-----hhhhhcc--CCceEEECCCCCC----CCC---hhHhhCCCCCEEeccC
Confidence            2578888888543221     1111111  7899998855321    111   1222446677666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.80  E-value=6.1e-06  Score=84.13  Aligned_cols=164  Identities=19%  Similarity=0.185  Sum_probs=114.3

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeEE
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLSF  238 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~L  238 (430)
                      ..+++|+.|.|.++.+..-  . -+..+++|+.|.|.+|.. ..+.....+++|+.|.+.++. +..+. + ..++|+.|
T Consensus        40 ~~L~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~Ls~N~l-~~~~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L  114 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKL-TDIKPLTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSL  114 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC--T-TGGGCTTCCEEECTTSCC-CCCGGGGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEE
T ss_pred             hcCCCCCEEECcCCCCCCC--h-HHccCCCCCEEEeeCCCC-CCChhhccCCCCCEEECcCCC-CCCChhhccCCCCCEE
Confidence            3678999999998877542  2 267899999999999853 222223456899999999886 33322 1 35789999


Q ss_pred             EEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecC
Q 014141          239 KYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAAN  316 (430)
Q Consensus       239 ~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  316 (430)
                      .+.+..+.  -.+..+++|+.+.+..+.....     ..+..+++|+.|.|..+. +........+++|++|+|+.+.-.
T Consensus       115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-----GGGGSCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCCCccccCCCccCEEECCCCccCCc-----hhhcccCCCCEEECcCCc-CCCchhhccCCCCCEEECcCCCCC
Confidence            99877542  2356788999999986554321     456789999999998876 443222334889999998654222


Q ss_pred             ccchhhHHHHHhhCCCceEEEEEEe
Q 014141          317 QETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       317 ~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                           .+ .-+..+++|+.|+|...
T Consensus       189 -----~l-~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          189 -----DL-RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             -----BC-GGGTTCTTCSEEECCSE
T ss_pred             -----CC-hHHccCCCCCEEEccCC
Confidence                 12 23678999999998654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.79  E-value=2.3e-05  Score=79.90  Aligned_cols=40  Identities=15%  Similarity=0.228  Sum_probs=25.5

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  200 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (430)
                      +.++++|++|+|.++.+.+- ....+.++++|+.|.|.++.
T Consensus       143 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          143 FHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSC
T ss_pred             hccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCC
Confidence            46777788888777765431 11234567777777777663

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.78  E-value=8e-06  Score=74.50  Aligned_cols=61  Identities=20%  Similarity=0.103  Sum_probs=35.4

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  223 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~  223 (430)
                      .+..+++|+.|+|.+..+.+-  . -+..+++|+.|.+.++.. +.+..  -..+++|+.|.+.++.
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~  120 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQ  120 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEECCCCc
Confidence            345677777777777766542  1 355677777777777632 22111  1234566666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.77  E-value=7.5e-06  Score=76.40  Aligned_cols=40  Identities=20%  Similarity=0.346  Sum_probs=19.2

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (430)
                      .+.++++|++|+|.+..+.+. +...+..+++|+.|.|.++
T Consensus        96 ~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           96 AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSS
T ss_pred             hHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCC
Confidence            334555555555555544321 1112344555555555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.76  E-value=4e-05  Score=78.29  Aligned_cols=193  Identities=15%  Similarity=0.042  Sum_probs=107.4

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  241 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~  241 (430)
                      .+++|++|+|+++.++.  +.   ...++|+.|.|.++. ++.+  ....++|+.|.+.++. +..+....|+|++|.+.
T Consensus        79 ~l~~L~~L~Ls~N~l~~--lp---~~l~~L~~L~Ls~N~-l~~l--~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls  149 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS--LP---VLPPGLLELSIFSNP-LTHL--PALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVS  149 (622)
T ss_dssp             CCTTCCEEEECSCCCSC--CC---CCCTTCCEEEECSCC-CCCC--CCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECC
T ss_pred             cCCCCCEEEcCCCcCCc--CC---CCCCCCCEEECcCCc-CCCC--CCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECc
Confidence            45777777777766542  11   156777777777663 2222  1133667777776664 44443344777777777


Q ss_pred             cceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchh
Q 014141          242 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLL  321 (430)
Q Consensus       242 ~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  321 (430)
                      ++.+...-...++|+.+.+..+...       .+...+++|+.|++..+. +.  .++..+++|+.|.+..+.-.  .  
T Consensus       150 ~N~l~~l~~~~~~L~~L~L~~N~l~-------~l~~~~~~L~~L~Ls~N~-l~--~l~~~~~~L~~L~L~~N~l~--~--  215 (622)
T 3g06_A          150 DNQLASLPALPSELCKLWAYNNQLT-------SLPMLPSGLQELSVSDNQ-LA--SLPTLPSELYKLWAYNNRLT--S--  215 (622)
T ss_dssp             SSCCSCCCCCCTTCCEEECCSSCCS-------CCCCCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSCCS--S--
T ss_pred             CCcCCCcCCccCCCCEEECCCCCCC-------CCcccCCCCcEEECCCCC-CC--CCCCccchhhEEECcCCccc--c--
Confidence            6644322223456777766643322       233556788888887766 32  34445678888877543221  1  


Q ss_pred             hHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEecC
Q 014141          322 GLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIKPS  398 (430)
Q Consensus       322 ~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~~~  398 (430)
                       +.   ...++|+.|++....-    ..   .  +..+++|+.+.+.+-.-..  +.      ...+.|+.+.+...
T Consensus       216 -l~---~~~~~L~~L~Ls~N~L----~~---l--p~~l~~L~~L~Ls~N~L~~--lp------~~~~~L~~L~Ls~N  271 (622)
T 3g06_A          216 -LP---ALPSGLKELIVSGNRL----TS---L--PVLPSELKELMVSGNRLTS--LP------MLPSGLLSLSVYRN  271 (622)
T ss_dssp             -CC---CCCTTCCEEECCSSCC----SC---C--CCCCTTCCEEECCSSCCSC--CC------CCCTTCCEEECCSS
T ss_pred             -cC---CCCCCCCEEEccCCcc----Cc---C--CCCCCcCcEEECCCCCCCc--CC------cccccCcEEeCCCC
Confidence             11   2347888888854311    10   1  1334678888777632111  00      04577888777654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=97.76  E-value=1e-05  Score=82.66  Aligned_cols=172  Identities=19%  Similarity=0.145  Sum_probs=107.2

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEE----EeCC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE----ISAP  233 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~----i~~P  233 (430)
                      .+.++++|+.|+|.+..++.  +..-+..+++|+.|.+.++...... ..-..+++|+.|.+.++.....+.    -..+
T Consensus       273 ~~~~l~~L~~L~l~~n~l~~--lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLSE--LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCSC--CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             HhccccCCCEEeccCCccCC--CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            46788999999999887652  3333678999999999988533211 112356899999998876322222    1358


Q ss_pred             ceeEEEEecceee------eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccccc---CCCCc
Q 014141          234 NLLSFKYIGQDIN------LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQ---REFPK  304 (430)
Q Consensus       234 ~L~~L~~~~~~~~------~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~---~~~~~  304 (430)
                      +|++|++.+....      ..+..+++|+.+.+..+.....   ....+..+++|+.|++..+. +.....+   ..+++
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL---KTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHL  426 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE---CTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTT
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC---CHHHhcCCccCCeEECCCCc-CCCcccchhhhCccc
Confidence            8999998876442      2356788999999875543211   11345678999999998776 3322211   12566


Q ss_pred             cceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          305 LMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       305 L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      |++|+++...-..    .....+..+|+|++|++..
T Consensus       427 L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~  458 (606)
T 3t6q_A          427 LKVLNLSHSLLDI----SSEQLFDGLPALQHLNLQG  458 (606)
T ss_dssp             CCEEECTTCCCBT----TCTTTTTTCTTCCEEECTT
T ss_pred             CCEEECCCCccCC----cCHHHHhCCCCCCEEECCC
Confidence            6666664321110    1123345566666666643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=97.76  E-value=5.1e-06  Score=81.63  Aligned_cols=84  Identities=19%  Similarity=0.078  Sum_probs=48.9

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCce-ee--EecCCCCcceEEEeecCCccEEE-----E
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLS-LK--VVGSSIPLKCLDIQFCYSIKEIE-----I  230 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~-~~--i~~~~~~L~~L~l~~c~~l~~i~-----i  230 (430)
                      .+.++++|++|+|.+..+.+. ....+.++++|+.|.|.+|..... +.  .-..+++|+.|.+.++. +..+.     -
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  151 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFL  151 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGG
T ss_pred             cccccccCCEEeCCCCccCcc-ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccC
Confidence            456777788888777654321 122355677888888877753221 11  12245778888887765 22221     1


Q ss_pred             eCCceeEEEEecce
Q 014141          231 SAPNLLSFKYIGQD  244 (430)
Q Consensus       231 ~~P~L~~L~~~~~~  244 (430)
                      ..++|++|++.+..
T Consensus       152 ~l~~L~~L~L~~n~  165 (455)
T 3v47_A          152 NMRRFHVLDLTFNK  165 (455)
T ss_dssp             GCTTCCEEECTTCC
T ss_pred             CCCcccEEeCCCCc
Confidence            35778888776653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.74  E-value=6.9e-06  Score=78.29  Aligned_cols=201  Identities=14%  Similarity=0.140  Sum_probs=125.1

Q ss_pred             CCCceEEEeeEEEcchh---HHHHhhcCC-cccceeeccCCCCceeeE---e----cCCCCcceEEEeecCCccEEE---
Q 014141          164 KSLRSLTLCAVNVTGEV---VEFFIHNCP-LLENLRITQSPDLLSLKV---V----GSSIPLKCLDIQFCYSIKEIE---  229 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~---l~~ll~~cp-~Le~L~L~~~~~~~~~~i---~----~~~~~L~~L~l~~c~~l~~i~---  229 (430)
                      ++|++|+|+++.+++..   +...+..+| .|++|.|.+|. ++....   .    ..+++|+.|.+.++. +....   
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~   99 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDE   99 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHH
Confidence            55999999999887643   446677888 99999999984 322111   1    113789999999887 33221   


Q ss_pred             ----E-eC-CceeEEEEecceeee--------ecCC-CCCceEEEEEeecCcc-hhhHHHHhhccCC-CceEEEEeccee
Q 014141          230 ----I-SA-PNLLSFKYIGQDINL--------HVGS-LPQLVDVVFHVTPMVQ-KMHCIGSIVSYLP-QLKTLELDGCNE  292 (430)
Q Consensus       230 ----i-~~-P~L~~L~~~~~~~~~--------~~~~-~~~L~~~~i~~~~~~~-~~~~~~~l~~~~~-~l~~L~l~~~~~  292 (430)
                          + .. ++|++|++.+..+..        .+.. ..+|+.+.+..+.... ....+...+..++ +|+.|.+..+. 
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-  178 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-  178 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-
Confidence                1 11 799999998774421        1223 3589999888654332 1223334455555 99999998876 


Q ss_pred             eecccc------cCCC-CccceEEEEEeecCccchhhHHHHHhh-CCCceEEEEEEeccccccccCccc--cc-cCcCCC
Q 014141          293 VFAQFS------QREF-PKLMNLNISFTAANQETLLGLSFIMKA-CPFLEKLVLQIWNNGRRIGKKRHQ--IS-KHSHQH  361 (430)
Q Consensus       293 ~~~~~l------~~~~-~~L~~L~l~~~~~~~~~~~~l~~lL~~-~p~L~~L~l~~~~~~~~~~~~~~~--~~-~~~~~~  361 (430)
                      +.....      ...+ ++|++|+|+...-.......+...+.. +++|++|++....    ..+.+..  .. -..+++
T Consensus       179 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----l~~~~~~~l~~~~~~l~~  254 (362)
T 3goz_A          179 LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC----LHGPSLENLKLLKDSLKH  254 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC----CCCCCHHHHHHTTTTTTT
T ss_pred             CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC----CCcHHHHHHHHHHhcCCC
Confidence            432211      1124 589999996654333334446777776 5699999996532    1221110  11 234577


Q ss_pred             ccEEEEeeee
Q 014141          362 LKLVELQGFN  371 (430)
Q Consensus       362 L~~v~i~~~~  371 (430)
                      |+.+.+.+..
T Consensus       255 L~~L~L~~n~  264 (362)
T 3goz_A          255 LQTVYLDYDI  264 (362)
T ss_dssp             CSEEEEEHHH
T ss_pred             ccEEEeccCC
Confidence            9999998754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.73  E-value=9.1e-05  Score=65.91  Aligned_cols=187  Identities=13%  Similarity=0.029  Sum_probs=104.3

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE----EeCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE----ISAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~----i~~P~L~~  237 (430)
                      ++|++|+|.+..++.-. ...+.++++|+.|.+.++..++.+..  -..+++|+.|.+.+|..+..+.    -..|+|++
T Consensus        31 ~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            47888888887665311 12356788888888888864444331  1345788888888755566554    14578888


Q ss_pred             EEEecceeee--ecCCCCCce---EEEEEee-cCcchhhHHHHhhccCCCce-EEEEecceeeecccccCC---CCccce
Q 014141          238 FKYIGQDINL--HVGSLPQLV---DVVFHVT-PMVQKMHCIGSIVSYLPQLK-TLELDGCNEVFAQFSQRE---FPKLMN  307 (430)
Q Consensus       238 L~~~~~~~~~--~~~~~~~L~---~~~i~~~-~~~~~~~~~~~l~~~~~~l~-~L~l~~~~~~~~~~l~~~---~~~L~~  307 (430)
                      |.+.+.....  .+...++|+   .+.+..+ .... ..  ...+..+++|+ .|++..+. +.  .++..   .++|++
T Consensus       110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~-i~--~~~~~~l~~L~~~L~l~~n~-l~--~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS-IP--VNAFQGLCNETLTLKLYNNG-FT--SVQGYAFNGTKLDA  183 (239)
T ss_dssp             EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCE-EC--TTTTTTTBSSEEEEECCSCC-CC--EECTTTTTTCEEEE
T ss_pred             EeCCCCCCccccccccccccccccEEECCCCcchhh-cC--cccccchhcceeEEEcCCCC-Cc--ccCHhhcCCCCCCE
Confidence            8887764321  144555665   6666644 2211 00  03356778888 88887665 32  22222   245666


Q ss_pred             EEEEEeecCccchhhH-HHHHhhC-CCceEEEEEEeccccccccCccccccCcCCCccEEEEee
Q 014141          308 LNISFTAANQETLLGL-SFIMKAC-PFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQG  369 (430)
Q Consensus       308 L~l~~~~~~~~~~~~l-~~lL~~~-p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  369 (430)
                      |++....    ....+ ...+..+ ++|+.|++....-    .   ..+ ...+.+|+.+.+.+
T Consensus       184 L~L~~n~----~l~~i~~~~~~~l~~~L~~L~l~~N~l----~---~l~-~~~~~~L~~L~l~~  235 (239)
T 2xwt_C          184 VYLNKNK----YLTVIDKDAFGGVYSGPSLLDVSQTSV----T---ALP-SKGLEHLKELIARN  235 (239)
T ss_dssp             EECTTCT----TCCEECTTTTTTCSBCCSEEECTTCCC----C---CCC-CTTCTTCSEEECTT
T ss_pred             EEcCCCC----CcccCCHHHhhccccCCcEEECCCCcc----c---cCC-hhHhccCceeeccC
Confidence            6663320    01111 2345566 8888888843210    1   111 12456777776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.72  E-value=1.8e-06  Score=91.43  Aligned_cols=37  Identities=8%  Similarity=-0.040  Sum_probs=19.8

Q ss_pred             CCCCCceEEEeeEEEcchhHHH--HhhcCCcccceeeccCC
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEF--FIHNCPLLENLRITQSP  200 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~--ll~~cp~Le~L~L~~~~  200 (430)
                      .+++|+.|+|.+..+.  .+..  .+..+++|+.|.|.++.
T Consensus       546 ~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~  584 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNK  584 (876)
T ss_dssp             TTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSC
T ss_pred             ccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCC
Confidence            3446666666665554  2322  44555666666665553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.72  E-value=6e-06  Score=77.05  Aligned_cols=195  Identities=15%  Similarity=0.110  Sum_probs=102.9

Q ss_pred             CCCCCCCCCCceEEEee-EEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCcc-EEE---E
Q 014141          157 GCGLSGIKSLRSLTLCA-VNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIK-EIE---I  230 (430)
Q Consensus       157 p~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~-~i~---i  230 (430)
                      |..+.++++|++|+|.+ ..+.+. +..-+..+++|+.|.|.++.....+. .-..+++|+.|.+.++. +. .+.   -
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~  146 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSGTLPPSIS  146 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGG
T ss_pred             ChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCCcCChHHh
Confidence            33456778888888885 333321 22235678888888888775322211 11245778888887664 11 111   1


Q ss_pred             eCCceeEEEEecceee----eecCCCC-CceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCC
Q 014141          231 SAPNLLSFKYIGQDIN----LHVGSLP-QLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFP  303 (430)
Q Consensus       231 ~~P~L~~L~~~~~~~~----~~~~~~~-~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~  303 (430)
                      ..|+|++|.+.+..+.    ..+..++ .|+.+.+..+.......   ..+..++ |+.|++..+. +...  .....++
T Consensus       147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~---~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~~l~  221 (313)
T 1ogq_A          147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP---PTFANLN-LAFVDLSRNM-LEGDASVLFGSDK  221 (313)
T ss_dssp             GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC---GGGGGCC-CSEEECCSSE-EEECCGGGCCTTS
T ss_pred             cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC---hHHhCCc-ccEEECcCCc-ccCcCCHHHhcCC
Confidence            3477888887766442    2344555 77777776443321111   2233444 7888877665 3221  1112266


Q ss_pred             ccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEee
Q 014141          304 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG  369 (430)
Q Consensus       304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~  369 (430)
                      +|+.|+++...-.. .    ...+..+++|++|++....-      .+..+. -..+++|+.+.+.+
T Consensus       222 ~L~~L~L~~N~l~~-~----~~~~~~l~~L~~L~Ls~N~l------~~~~p~~l~~l~~L~~L~Ls~  277 (313)
T 1ogq_A          222 NTQKIHLAKNSLAF-D----LGKVGLSKNLNGLDLRNNRI------YGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CCSEEECCSSEECC-B----GGGCCCCTTCCEEECCSSCC------EECCCGGGGGCTTCCEEECCS
T ss_pred             CCCEEECCCCceee-e----cCcccccCCCCEEECcCCcc------cCcCChHHhcCcCCCEEECcC
Confidence            77777764432110 1    11145667888887744211      111111 12346677777765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.71  E-value=5.3e-05  Score=75.75  Aligned_cols=215  Identities=14%  Similarity=0.155  Sum_probs=112.5

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhh--cCCcccceeeccCCCCceeeEe------cCCCC------------------
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIH--NCPLLENLRITQSPDLLSLKVV------GSSIP------------------  213 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~~~i~------~~~~~------------------  213 (430)
                      +..+++|+.|.|.++.+.+..+..+..  .++.|+.|.+.+|...+.+...      ..+++                  
T Consensus       216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~  295 (520)
T 2z7x_B          216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI  295 (520)
T ss_dssp             GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred             hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhh
Confidence            456788888888888888766555543  3678999998877421111000      12233                  


Q ss_pred             --------cceEEEeecCCccEEE--EeCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccC
Q 014141          214 --------LKCLDIQFCYSIKEIE--ISAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYL  279 (430)
Q Consensus       214 --------L~~L~l~~c~~l~~i~--i~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~  279 (430)
                              |+.|.+.++. +..+.  -..++|++|++.+....    ..+..+++|+.+.+..+.... ...+...+..+
T Consensus       296 ~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~l  373 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE-LSKIAEMTTQM  373 (520)
T ss_dssp             HHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCB-HHHHHHHHTTC
T ss_pred             hcccccCceeEEEcCCCc-cccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCc-cccchHHHhhC
Confidence                    4444444433 11111  24567777777765432    234567778877777544331 12233445677


Q ss_pred             CCceEEEEecceeeeccccc----CCCCccceEEEEEeecCccchhhHHHHHhhC-CCceEEEEEEeccccccccCcccc
Q 014141          280 PQLKTLELDGCNEVFAQFSQ----REFPKLMNLNISFTAANQETLLGLSFIMKAC-PFLEKLVLQIWNNGRRIGKKRHQI  354 (430)
Q Consensus       280 ~~l~~L~l~~~~~~~~~~l~----~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~-p~L~~L~l~~~~~~~~~~~~~~~~  354 (430)
                      ++|+.|+++.+. +... +|    ..+++|++|+++...-..       .+.... ++|+.|++....-    .   ..+
T Consensus       374 ~~L~~L~Ls~N~-l~~~-l~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~l~~~L~~L~Ls~N~l----~---~ip  437 (520)
T 2z7x_B          374 KSLQQLDISQNS-VSYD-EKKGDCSWTKSLLSLNMSSNILTD-------TIFRCLPPRIKVLDLHSNKI----K---SIP  437 (520)
T ss_dssp             TTCCEEECCSSC-CBCC-GGGCSCCCCTTCCEEECCSSCCCG-------GGGGSCCTTCCEEECCSSCC----C---CCC
T ss_pred             CCCCEEECCCCc-CCcc-cccchhccCccCCEEECcCCCCCc-------chhhhhcccCCEEECCCCcc----c---ccc
Confidence            888888887766 3221 22    125677777764432111       011122 5777777744311    1   111


Q ss_pred             c-cCcCCCccEEEEeeee--cChhhHHHHHHHHhcccccccEEEecC
Q 014141          355 S-KHSHQHLKLVELQGFN--GREIDFELAFYVFENATMLEKMIIKPS  398 (430)
Q Consensus       355 ~-~~~~~~L~~v~i~~~~--g~~~e~~l~~~ll~~a~~Le~m~i~~~  398 (430)
                      . ...+++|+.+.+.+-.  +...+      .+.+.+.|+.+.+...
T Consensus       438 ~~~~~l~~L~~L~L~~N~l~~l~~~------~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          438 KQVVKLEALQELNVASNQLKSVPDG------IFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSS
T ss_pred             hhhhcCCCCCEEECCCCcCCccCHH------HhccCCcccEEECcCC
Confidence            1 2245666666666532  11111      2345666776666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.70  E-value=1.4e-05  Score=73.72  Aligned_cols=58  Identities=21%  Similarity=0.130  Sum_probs=37.4

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  223 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~  223 (430)
                      ++|+.|+|.+..++.-. ...+..++.|+.|.|.++. ++.+.....+++|+.|.+.++.
T Consensus        31 ~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~   88 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ   88 (290)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC
T ss_pred             CCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc
Confidence            67888888877664321 1235678888888888774 3433333455677777776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=97.68  E-value=5.6e-05  Score=65.22  Aligned_cols=62  Identities=23%  Similarity=0.255  Sum_probs=40.7

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCc-eeeEecCCCCcceEEEeecC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL-SLKVVGSSIPLKCLDIQFCY  223 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-~~~i~~~~~~L~~L~l~~c~  223 (430)
                      .+..+++|++|++.++.+.+-  . .+..+|+|+.|.+.++..-. ....-..+++|+.|.+.++.
T Consensus        61 ~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  123 (197)
T 4ezg_A           61 GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA  123 (197)
T ss_dssp             TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred             HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence            346889999999999966442  2 46789999999999985322 12122234555555555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.68  E-value=1.9e-05  Score=71.79  Aligned_cols=58  Identities=14%  Similarity=0.007  Sum_probs=31.5

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY  223 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~  223 (430)
                      ++|++|+|.+..++.-. ...+..+++|+.|.|.++.. +.+...  ..+++|+.|.+.++.
T Consensus        37 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECCCCc
Confidence            56777777777654311 11345677777777776632 221111  224566666665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.67  E-value=7.8e-06  Score=76.11  Aligned_cols=217  Identities=12%  Similarity=0.124  Sum_probs=131.1

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhh--cCCcccceeeccCCCCceeeEe---cCCCCcceEEEeecCCcc------EEE-E
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIH--NCPLLENLRITQSPDLLSLKVV---GSSIPLKCLDIQFCYSIK------EIE-I  230 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~--~cp~Le~L~L~~~~~~~~~~i~---~~~~~L~~L~l~~c~~l~------~i~-i  230 (430)
                      ...++.|.+.++.+++..+..+..  .++.|++|.+.++.........   ..+++|+.|.+.++.--.      ... .
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            355788999998888766655543  4678999999998643222111   456889999999876211      011 1


Q ss_pred             eCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeecc-c----ccC
Q 014141          231 SAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQ-F----SQR  300 (430)
Q Consensus       231 ~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~-~----l~~  300 (430)
                      ..|+|++|++.+..+.    -.+..+++|+.+.+..+.......... ..+..+++|+.|.+..+. +... .    +..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~  221 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAA  221 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHh
Confidence            4789999999887542    244578899999988654332111111 234688999999998887 4321 1    112


Q ss_pred             CCCccceEEEEEeecCccchhhHHHHHhhC---CCceEEEEEEeccccccccCccccccCcCCCccEEEEeeeecChhhH
Q 014141          301 EFPKLMNLNISFTAANQETLLGLSFIMKAC---PFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDF  377 (430)
Q Consensus       301 ~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~---p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~  377 (430)
                      .+++|++|+|+...-....    ..-+..+   |+|++|.+....-    .   ..+. ...++|+.+.+.+-.-..-. 
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~~~L~~L~Ls~N~l----~---~lp~-~~~~~L~~L~Ls~N~l~~~~-  288 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATV----NPSAPRCMWSSALNSLNLSFAGL----E---QVPK-GLPAKLRVLDLSSNRLNRAP-  288 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCC----CSCCSSCCCCTTCCCEECCSSCC----C---SCCS-CCCSCCSCEECCSCCCCSCC-
T ss_pred             cCCCCCEEECCCCCCCccc----hhhHHhccCcCcCCEEECCCCCC----C---chhh-hhcCCCCEEECCCCcCCCCc-
Confidence            3689999998554322110    1112233   7999999955321    1   1111 12368888888763211100 


Q ss_pred             HHHHHHHhcccccccEEEecC
Q 014141          378 ELAFYVFENATMLEKMIIKPS  398 (430)
Q Consensus       378 ~l~~~ll~~a~~Le~m~i~~~  398 (430)
                           .....+.|+.+.+...
T Consensus       289 -----~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          289 -----QPDELPEVDNLTLDGN  304 (310)
T ss_dssp             -----CTTSCCCCSCEECSST
T ss_pred             -----hhhhCCCccEEECcCC
Confidence                 1246688888877543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.67  E-value=1.4e-05  Score=81.63  Aligned_cols=56  Identities=16%  Similarity=0.039  Sum_probs=26.3

Q ss_pred             ccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          277 SYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       277 ~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ..+++|+.|.++.+. +.  .+|..+++|+.|+|+.+.     +..+..-+..+|+|+.|++..
T Consensus       238 ~~l~~L~~L~Ls~N~-L~--~lp~~~~~L~~L~Ls~N~-----L~~lp~~l~~l~~L~~L~L~~  293 (622)
T 3g06_A          238 VLPSELKELMVSGNR-LT--SLPMLPSGLLSLSVYRNQ-----LTRLPESLIHLSSETTVNLEG  293 (622)
T ss_dssp             CCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSC-----CCSCCGGGGGSCTTCEEECCS
T ss_pred             CCCCcCcEEECCCCC-CC--cCCcccccCcEEeCCCCC-----CCcCCHHHhhccccCEEEecC
Confidence            344555555555544 22  223345556665553321     112223355566666666644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.66  E-value=3e-05  Score=76.29  Aligned_cols=135  Identities=19%  Similarity=0.183  Sum_probs=58.9

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-eCCceeEEE
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFK  239 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~  239 (430)
                      ..+++|++|+|.+..+++-  .  ++.++.|+.|.+.++..++.+.+ ..+++|+.|.+.++. +..+.+ ..++|+.|.
T Consensus       124 ~~l~~L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~  197 (457)
T 3bz5_A          124 SQNPLLTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDCSFNK-ITELDVSQNKLLNRLN  197 (457)
T ss_dssp             TTCTTCCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEECCSSC-CCCCCCTTCTTCCEEE
T ss_pred             CCCCcCCEEECCCCcccee--c--cccCCcCCEEECCCCCccccccc-ccCCcCCEEECCCCc-cceeccccCCCCCEEE
Confidence            3444444444444433321  1  33444455555544433333221 123455555555443 222222 235555555


Q ss_pred             Eeccee-eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEE
Q 014141          240 YIGQDI-NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLN  309 (430)
Q Consensus       240 ~~~~~~-~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~  309 (430)
                      +.+..+ .+.+..+++|+.+.+..+.... +    . +..+++|+.|.+..+. +.... +..+++|+.|.
T Consensus       198 l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~-i----p-~~~l~~L~~L~l~~N~-l~~~~-~~~l~~L~~L~  260 (457)
T 3bz5_A          198 CDTNNITKLDLNQNIQLTFLDCSSNKLTE-I----D-VTPLTQLTYFDCSVNP-LTELD-VSTLSKLTTLH  260 (457)
T ss_dssp             CCSSCCSCCCCTTCTTCSEEECCSSCCSC-C----C-CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEEE
T ss_pred             CcCCcCCeeccccCCCCCEEECcCCcccc-c----C-ccccCCCCEEEeeCCc-CCCcC-HHHCCCCCEEe
Confidence            554433 1234455556665555433221 1    1 3455666666665554 22211 22255555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.65  E-value=5e-05  Score=71.16  Aligned_cols=99  Identities=12%  Similarity=0.083  Sum_probs=50.0

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE----EeCCc
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE----ISAPN  234 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~----i~~P~  234 (430)
                      .+.++++|++|+|.+..+++- ....+..+++|+.|.+.++.- +.+... ..++|+.|.+.++. +..+.    -..++
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~l~~  146 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQL-KELPEK-MPKTLQELRVHENE-ITKVRKSVFNGLNQ  146 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCC-SBCCSS-CCTTCCEEECCSSC-CCBBCHHHHTTCTT
T ss_pred             hhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCEEECCCCcC-CccChh-hcccccEEECCCCc-ccccCHhHhcCCcc
Confidence            345677777777777655431 122345677777777776642 222111 11566666666554 22221    12355


Q ss_pred             eeEEEEecceee------eecCCCCCceEEEEE
Q 014141          235 LLSFKYIGQDIN------LHVGSLPQLVDVVFH  261 (430)
Q Consensus       235 L~~L~~~~~~~~------~~~~~~~~L~~~~i~  261 (430)
                      |+.|++.+....      ..+.++++|+.+.+.
T Consensus       147 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             CCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             ccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            666655544221      123344555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.59  E-value=2e-05  Score=71.95  Aligned_cols=123  Identities=15%  Similarity=0.177  Sum_probs=60.5

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEE----eCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i----~~P~L~~  237 (430)
                      ++|++|+|.+..+++-. ...+.++++|+.|.+.++. ++.+..  -..+++|+.|.+.++. +..+..    ..++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCE
T ss_pred             CCccEEECCCCcccccC-HhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccE
Confidence            34666666655443211 0123455666666666553 222211  1233556666665544 232221    2356666


Q ss_pred             EEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          238 FKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       238 L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      |.+.+....    ..+..+++|+.+.+..+.....  .+...+..+++|+.|++..+.
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--CCCGGGGGCTTCCEEECCSSC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCCcccee--cCchhhccCCCCCEEECCCCC
Confidence            666554321    2345666777777664432210  011345667788888887665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.58  E-value=4.1e-05  Score=69.72  Aligned_cols=166  Identities=11%  Similarity=0.091  Sum_probs=82.5

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE----eCCceeE
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLS  237 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i----~~P~L~~  237 (430)
                      .+++|+.|.+.+..+.+-  .. +..+|+|+.|.+.++.. +.+..-..+++|+.|.+.++. +..+.-    ..++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~-l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QG-IQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TT-GGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCCCcccc--cc-cccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCE
Confidence            446666666666554431  11 44567777777766642 222222344667777766654 332221    2366666


Q ss_pred             EEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccc--cCCCCccceEEEE
Q 014141          238 FKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFS--QREFPKLMNLNIS  311 (430)
Q Consensus       238 L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l--~~~~~~L~~L~l~  311 (430)
                      |.+.+..+.    ..+..+++|+.+.+..+......   ...+..+++|+.|.+..+. +.....  ...+++|++|++.
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP---KGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccC---HHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECC
Confidence            666655332    11345566666666544322100   0234566677777776665 321110  1125566666664


Q ss_pred             EeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          312 FTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       312 ~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ...-..  .  ....+..+++|+.|++..
T Consensus       190 ~N~l~~--~--~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          190 QNQLKS--V--PDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             SSCCSC--C--CTTTTTTCTTCCEEECCS
T ss_pred             CCcCCc--c--CHHHHhCCcCCCEEEccC
Confidence            332111  1  113455667777777744

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.58  E-value=1.8e-05  Score=77.57  Aligned_cols=38  Identities=18%  Similarity=0.394  Sum_probs=35.7

Q ss_pred             cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 014141           20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW   57 (430)
Q Consensus        20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw   57 (430)
                      .|.|+.||+|++.+||++|+.+|+++++.|||+|+++-
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~   49 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKII   49 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHH
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999998753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.57  E-value=4.2e-06  Score=68.76  Aligned_cols=61  Identities=18%  Similarity=0.065  Sum_probs=37.3

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  223 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~  223 (430)
                      .+++|+.|++.++.+++..+...+..+++|+.|.+.+|. ++.+..-..+++|+.|.+.++.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCc
Confidence            347777888877777644444556677888888887773 3322222334566666666554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.56  E-value=0.001  Score=66.34  Aligned_cols=97  Identities=18%  Similarity=0.098  Sum_probs=45.3

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEEE-eCCceeEEEE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKY  240 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~~  240 (430)
                      ++|++|+|++..+.+-. ...+.++++|+.|.|.++.. +.+.  .-..+++|+.|++.++. +..+.. ..++|++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELW-TSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNK-LVKISCHPTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCC-HHHHTTCTTCCEEECCSSCC-CEEEGGGGTTCTTCCEEECCSSC-CCEEECCCCCCCSEEEC
T ss_pred             ccccEEECCCCcccccC-hhhccccccccEEecCCCcc-CCcChHHhhcccCCCEEecCCCc-eeecCccccCCccEEec
Confidence            55666666655543311 12244556666666655532 2211  11234556666665543 333221 3455566655


Q ss_pred             eccee-----eeecCCCCCceEEEEEee
Q 014141          241 IGQDI-----NLHVGSLPQLVDVVFHVT  263 (430)
Q Consensus       241 ~~~~~-----~~~~~~~~~L~~~~i~~~  263 (430)
                      .+..+     +..++.+++|+.+.+..+
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             cCCccccccchhhhccCCcceEEEecCc
Confidence            54422     123445555666655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.55  E-value=2.5e-05  Score=71.23  Aligned_cols=172  Identities=16%  Similarity=0.102  Sum_probs=97.8

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEE---EE-eC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEI---EI-SA  232 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i---~i-~~  232 (430)
                      .+.++++|++|+|.+..+..-. ...+..+++|+.|.|.++.. +.+..  -..+++|+.|.+.++. +..+   .+ ..
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  123 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHL  123 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTC
T ss_pred             HhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCcc-CccChhhhcCCccccEEECCCCC-ccccCchhcccC
Confidence            5678899999999988665311 12356789999999998853 22221  1345789999988765 2221   12 45


Q ss_pred             CceeEEEEeccee-----eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCce-EEEEecceeeecccccCC---CC
Q 014141          233 PNLLSFKYIGQDI-----NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLK-TLELDGCNEVFAQFSQRE---FP  303 (430)
Q Consensus       233 P~L~~L~~~~~~~-----~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~-~L~l~~~~~~~~~~l~~~---~~  303 (430)
                      ++|++|.+.+...     +..+..+++|+.+.+..+...........-+..++.+. .|.+..+. +..  ++..   ..
T Consensus       124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~--~~~~~~~~~  200 (276)
T 2z62_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNF--IQPGAFKEI  200 (276)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCE--ECTTSSCSC
T ss_pred             CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-ccc--cCccccCCC
Confidence            7899999887643     22456778899988876543321111112223333333 66666554 221  1111   23


Q ss_pred             ccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          304 KLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       304 ~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      +|++|+++...-..  .  ...++..+++|+.|++..
T Consensus       201 ~L~~L~L~~n~l~~--~--~~~~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          201 RLKELALDTNQLKS--V--PDGIFDRLTSLQKIWLHT  233 (276)
T ss_dssp             CEEEEECCSSCCSC--C--CTTTTTTCCSCCEEECCS
T ss_pred             cccEEECCCCceee--c--CHhHhcccccccEEEccC
Confidence            56666664332111  1  113445667777776643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.48  E-value=9.2e-05  Score=67.09  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=19.4

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (430)
                      ..+++|++|+|.+..+++-.  . +..+++|+.|.|.++
T Consensus        60 ~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           60 QFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSS
T ss_pred             hhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCC
Confidence            45566666666655554311  1 455566666666555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.48  E-value=5.7e-05  Score=80.34  Aligned_cols=101  Identities=13%  Similarity=0.080  Sum_probs=49.1

Q ss_pred             CCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEE----EeC
Q 014141          158 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE----ISA  232 (430)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~----i~~  232 (430)
                      ..+..+++|+.|+|.+..+.... ...+.++++|+.|.|.++...... ..-..+++|+.|.+.++. +..+.    -..
T Consensus       284 ~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l  361 (844)
T 3j0a_A          284 RVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFL  361 (844)
T ss_dssp             CCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSCSC
T ss_pred             hhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhcCC
Confidence            34556677777777766554311 122456677777777666421110 011234566666666553 22221    124


Q ss_pred             CceeEEEEecceeeeecCCCCCceEEEEE
Q 014141          233 PNLLSFKYIGQDINLHVGSLPQLVDVVFH  261 (430)
Q Consensus       233 P~L~~L~~~~~~~~~~~~~~~~L~~~~i~  261 (430)
                      |+|+.|.+.+.... .+..+++|+.+.+.
T Consensus       362 ~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~  389 (844)
T 3j0a_A          362 EKLQTLDLRDNALT-TIHFIPSIPDIFLS  389 (844)
T ss_dssp             CCCCEEEEETCCSC-CCSSCCSCSEEEEE
T ss_pred             CCCCEEECCCCCCC-cccCCCCcchhccC
Confidence            56666666555332 12234455555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.46  E-value=0.00043  Score=73.50  Aligned_cols=40  Identities=13%  Similarity=0.187  Sum_probs=23.9

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (430)
                      +.++++|++|+|++..+.+......++.+++|+.|.|.++
T Consensus       119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            4566667777776665544333334556666666666655

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.42  E-value=4.7e-05  Score=78.84  Aligned_cols=123  Identities=13%  Similarity=0.044  Sum_probs=54.9

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEE----EeCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIE----ISAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~----i~~P~L~~  237 (430)
                      ++|+.|+|.++.+.+-. ...+..+++|+.|.|.++.....+.  .-..+++|+.|.+.++. +..+.    ...|+|+.
T Consensus       381 ~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~  458 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQR  458 (680)
T ss_dssp             SCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCE
T ss_pred             CcCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCccccc
Confidence            45666666665443211 1224456666666666654322111  11234556666665554 11110    02355666


Q ss_pred             EEEeccee------eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          238 FKYIGQDI------NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       238 L~~~~~~~------~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      |.+.+...      +..+.++++|+.+.+..+.......   ..+.++++|+.|++..+.
T Consensus       459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND---DMLEGLEKLEILDLQHNN  515 (680)
T ss_dssp             EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSC
T ss_pred             chhccccccccccCCcccccCCCCCEEECCCCCCCcCCh---hhhccccccCEEeCCCCC
Confidence            65554322      1223445555555555332211000   223455556666655543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.41  E-value=3.3e-05  Score=72.47  Aligned_cols=81  Identities=17%  Similarity=0.153  Sum_probs=46.0

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE----EeCCc
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE----ISAPN  234 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~----i~~P~  234 (430)
                      .+.++++|++|+|.+..++.- ....+.++++|+.|.+.++.- +.+.... .++|+.|.+.++. +..+.    -..++
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~l~~~~-~~~L~~L~l~~n~-i~~~~~~~~~~l~~  148 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNHL-VEIPPNL-PSSLVELRIHDNR-IRKVPKGVFSGLRN  148 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSCC-CSCCSSC-CTTCCEEECCSSC-CCCCCSGGGSSCSS
T ss_pred             HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCcC-CccCccc-cccCCEEECCCCc-cCccCHhHhCCCcc
Confidence            456778888888877765431 122356778888888877642 2221111 1567777776654 22221    12466


Q ss_pred             eeEEEEecc
Q 014141          235 LLSFKYIGQ  243 (430)
Q Consensus       235 L~~L~~~~~  243 (430)
                      |+.|.+.+.
T Consensus       149 L~~L~l~~n  157 (332)
T 2ft3_A          149 MNCIEMGGN  157 (332)
T ss_dssp             CCEEECCSC
T ss_pred             CCEEECCCC
Confidence            666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.41  E-value=0.00011  Score=65.39  Aligned_cols=166  Identities=11%  Similarity=0.067  Sum_probs=99.1

Q ss_pred             CCCCCCCCceEEEeeEE-EcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE--EeCC
Q 014141          159 GLSGIKSLRSLTLCAVN-VTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE--ISAP  233 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~--i~~P  233 (430)
                      .+.++++|++|+|.+.. ++.-. ...+.++++|+.|.+.+|..++.+...  ..+++|+.|.+.++. +..+.  -..+
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccccccccc
Confidence            45688999999999875 53210 113578999999999986666654321  256889999998875 22221  1335


Q ss_pred             cee---EEEEecc-eee-e---ecCCCCCce-EEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccC----
Q 014141          234 NLL---SFKYIGQ-DIN-L---HVGSLPQLV-DVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQR----  300 (430)
Q Consensus       234 ~L~---~L~~~~~-~~~-~---~~~~~~~L~-~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~----  300 (430)
                      +|+   +|++.+. ... +   .+.++++|+ .+.+..+.... +..  ..+.. ++|+.|.+..+..+.  .++.    
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~--~~~~~-~~L~~L~L~~n~~l~--~i~~~~~~  201 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQG--YAFNG-TKLDAVYLNKNKYLT--VIDKDAFG  201 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECT--TTTTT-CEEEEEECTTCTTCC--EECTTTTT
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCH--hhcCC-CCCCEEEcCCCCCcc--cCCHHHhh
Confidence            565   8888876 442 1   245677888 88776443321 110  22233 689999997773122  2222    


Q ss_pred             CC-CccceEEEEEeecCccchhhHHHHHhhCCCceEEEEE
Q 014141          301 EF-PKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQ  339 (430)
Q Consensus       301 ~~-~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~  339 (430)
                      .+ ++|+.|+++...-.     .+..  ..+++|+.|.+.
T Consensus       202 ~l~~~L~~L~l~~N~l~-----~l~~--~~~~~L~~L~l~  234 (239)
T 2xwt_C          202 GVYSGPSLLDVSQTSVT-----ALPS--KGLEHLKELIAR  234 (239)
T ss_dssp             TCSBCCSEEECTTCCCC-----CCCC--TTCTTCSEEECT
T ss_pred             ccccCCcEEECCCCccc-----cCCh--hHhccCceeecc
Confidence            24 67888887443211     1111  157788888773

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=97.38  E-value=0.00011  Score=68.91  Aligned_cols=166  Identities=16%  Similarity=0.120  Sum_probs=104.8

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEEE-eCCceeEEEE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKY  240 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~~  240 (430)
                      ++|+.|+|.+..+++-. ...+..+++|+.|.|.++.. +.+.  .-..+++|+.|.+.++. +..+.. ..++|++|.+
T Consensus        52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcC-CeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEEC
Confidence            78999999998776421 12367899999999998853 2221  12356899999998876 443322 2378999999


Q ss_pred             ecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC-CCccceEEEEEeec
Q 014141          241 IGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFTAA  315 (430)
Q Consensus       241 ~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~-~~~L~~L~l~~~~~  315 (430)
                      .+..+.    ..+.++++|+.+.+..+.... .+.....+..+++|+.|.+..+. +.  .+|.. +++|++|+++...-
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~L~~L~l~~n~l  204 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTN-IT--TIPQGLPPSLTELHLDGNKI  204 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSC-CC--SCCSSCCTTCSEEECTTSCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCc-cCcChhhccCCCCcCEEECCCCc-cc--cCCccccccCCEEECCCCcC
Confidence            877442    235678999999988554321 01111445778899999987765 32  12222 46777777643221


Q ss_pred             CccchhhHHHHHhhCCCceEEEEEE
Q 014141          316 NQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       316 ~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ...    ....+..+++|+.|++..
T Consensus       205 ~~~----~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          205 TKV----DAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             CEE----CTGGGTTCTTCCEEECCS
T ss_pred             Ccc----CHHHhcCCCCCCEEECCC
Confidence            111    123455677777777744

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.35  E-value=0.00011  Score=66.87  Aligned_cols=63  Identities=19%  Similarity=0.130  Sum_probs=42.0

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCY  223 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~  223 (430)
                      .+.++++|++|+|.+..++.- -..++..+++|+.|.|.++.. +.+.  .-..+++|+.|.+.++.
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~  120 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQ  120 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCC-CCCCTTTTTTCSSCCEEECCSSC
T ss_pred             HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcC-CcCCHhHcccccCCCEEECCCCc
Confidence            456889999999998876531 123456789999999988753 2221  11244677777777654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.33  E-value=9.5e-05  Score=72.07  Aligned_cols=37  Identities=22%  Similarity=0.464  Sum_probs=35.2

Q ss_pred             cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 014141           20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL   56 (430)
Q Consensus        20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l   56 (430)
                      .|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            5889999999999999999999999999999999873

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.32  E-value=5.9e-05  Score=73.38  Aligned_cols=36  Identities=22%  Similarity=0.428  Sum_probs=34.5

Q ss_pred             cccCCCCCHH----HHHHHHhcCChHHHHHHHHhhhhhhh
Q 014141           20 EDWFSRFPDD----ILIHIISGLTLKEAARTSVLSSRWKY   55 (430)
Q Consensus        20 ~d~is~LPde----iL~~Ils~L~~~d~~rts~vSrrWr~   55 (430)
                      .|.|+.||+|    |+.+||++|+.++++++++|||+|++
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            5889999999    99999999999999999999999995

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.31  E-value=4.3e-05  Score=64.65  Aligned_cols=60  Identities=13%  Similarity=0.060  Sum_probs=36.6

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  223 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~  223 (430)
                      ..+++|+.|.|.++.++.  +..+...+|+|+.|.+.++. ++.+..-..+++|+.|.+.++.
T Consensus        16 ~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC
T ss_pred             CCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc
Confidence            355778888888776653  23334445688888888774 3333222345667777776654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.26  E-value=0.00014  Score=74.65  Aligned_cols=175  Identities=10%  Similarity=0.098  Sum_probs=98.3

Q ss_pred             CCCCCCCCCCCCceEEEeeEE-EcchhH----HHH--hhcCCcccceeeccCCCCceeeE---ecCCCCcceEEEeecCC
Q 014141          155 QSGCGLSGIKSLRSLTLCAVN-VTGEVV----EFF--IHNCPLLENLRITQSPDLLSLKV---VGSSIPLKCLDIQFCYS  224 (430)
Q Consensus       155 ~~p~~~~~~~~L~~L~L~~~~-~~~~~l----~~l--l~~cp~Le~L~L~~~~~~~~~~i---~~~~~~L~~L~l~~c~~  224 (430)
                      .+|..+.++++|++|+|.+.. +++..+    ..+  +..+++|+.|.+.++... .+.-   -..+++|+.|.+.++.-
T Consensus       264 ~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred             cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence            456777889999999999887 765223    322  234689999999888543 3321   23567899999887762


Q ss_pred             ccEEE--EeCCceeEEEEecceee---eecCCCCC-ceEEEEEeecCcchhhHHHHhhcc--CCCceEEEEecceeeecc
Q 014141          225 IKEIE--ISAPNLLSFKYIGQDIN---LHVGSLPQ-LVDVVFHVTPMVQKMHCIGSIVSY--LPQLKTLELDGCNEVFAQ  296 (430)
Q Consensus       225 l~~i~--i~~P~L~~L~~~~~~~~---~~~~~~~~-L~~~~i~~~~~~~~~~~~~~l~~~--~~~l~~L~l~~~~~~~~~  296 (430)
                      ...+.  -..++|+.|.+.+....   -.+..+++ |+.+.+..+... .   +...+..  +++|+.|++..+. +.. 
T Consensus       343 ~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~---lp~~~~~~~l~~L~~L~Ls~N~-l~~-  416 (636)
T 4eco_A          343 EGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-Y---IPNIFDAKSVSVMSAIDFSYNE-IGS-  416 (636)
T ss_dssp             EEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-S---CCSCCCTTCSSCEEEEECCSSC-TTT-
T ss_pred             ccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-c---cchhhhhcccCccCEEECcCCc-CCC-
Confidence            11332  13467788877766443   12344566 777777654432 1   1111222  2367777776655 221 


Q ss_pred             cccCC----------CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          297 FSQRE----------FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       297 ~l~~~----------~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ..|..          .++|++|+++...-.  ..  -..+++.+++|+.|++..
T Consensus       417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--~l--p~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          417 VDGKNFDPLDPTPFKGINVSSINLSNNQIS--KF--PKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             TTTCSSCTTCSSCCCCCCEEEEECCSSCCC--SC--CTHHHHTTCCCSEEECCS
T ss_pred             cchhhhcccccccccCCCCCEEECcCCccC--cC--CHHHHccCCCCCEEECCC
Confidence            11111          335666666433211  11  123555677777777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.22  E-value=0.00082  Score=67.78  Aligned_cols=82  Identities=17%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE-----eCC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI-----SAP  233 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i-----~~P  233 (430)
                      .+.++++|++|+|.+..+++-. ...+.++++|+.|+|.++. ++.+... .+++|+.|.++++. +..+.+     ..+
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~  146 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNR-LQNISCC-PMASLRHLDLSFND-FDVLPVCKEFGNLT  146 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSC-CCEECSC-CCTTCSEEECCSSC-CSBCCCCGGGGGCT
T ss_pred             hhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCc-CCccCcc-ccccCCEEECCCCC-ccccCchHhhcccC
Confidence            3456667777777666554311 1224556677777776664 2222222 44666666666654 332221     235


Q ss_pred             ceeEEEEecce
Q 014141          234 NLLSFKYIGQD  244 (430)
Q Consensus       234 ~L~~L~~~~~~  244 (430)
                      +|++|++.+..
T Consensus       147 ~L~~L~L~~n~  157 (562)
T 3a79_B          147 KLTFLGLSAAK  157 (562)
T ss_dssp             TCCEEEEECSB
T ss_pred             cccEEecCCCc
Confidence            66666665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.17  E-value=0.00017  Score=66.26  Aligned_cols=162  Identities=15%  Similarity=0.134  Sum_probs=93.2

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE---E-eCCc
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE---I-SAPN  234 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~---i-~~P~  234 (430)
                      .+.++++|+.|.|.+..++.-..   ...+|+|+.|.|.++..-.-......+++|+.|.+.++. +..+.   + ..++
T Consensus        50 ~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~  125 (290)
T 1p9a_G           50 TLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGE  125 (290)
T ss_dssp             GGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTT
T ss_pred             HhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCC
Confidence            34678999999998886654211   157899999999887432111112345788888887765 33332   1 2467


Q ss_pred             eeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-HhhccCCCceEEEEecceeeecccccCC---CCccc
Q 014141          235 LLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLM  306 (430)
Q Consensus       235 L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~  306 (430)
                      |++|.+.+..+.    ..+..+++|+.+.+..+....    +. ..+..+++|+.|.+..+. +.  .+|..   ..+|+
T Consensus       126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----l~~~~~~~l~~L~~L~L~~N~-l~--~ip~~~~~~~~L~  198 (290)
T 1p9a_G          126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE----LPAGLLNGLENLDTLLLQENS-LY--TIPKGFFGSHLLP  198 (290)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC----CCTTTTTTCTTCCEEECCSSC-CC--CCCTTTTTTCCCS
T ss_pred             CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc----cCHHHhcCcCCCCEEECCCCc-CC--ccChhhcccccCC
Confidence            888877766442    123456677777766443221    11 344667788888877665 32  23332   44677


Q ss_pred             eEEEEEee-cCccchhhHHHHHhhCC
Q 014141          307 NLNISFTA-ANQETLLGLSFIMKACP  331 (430)
Q Consensus       307 ~L~l~~~~-~~~~~~~~l~~lL~~~p  331 (430)
                      +|.|.... ....+...+...++.-+
T Consensus       199 ~l~L~~Np~~C~c~~~~l~~wl~~~~  224 (290)
T 1p9a_G          199 FAFLHGNPWLCNCEILYFRRWLQDNA  224 (290)
T ss_dssp             EEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             eEEeCCCCccCcCccHHHHHHHHhCc
Confidence            77764321 11234445555665544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.14  E-value=0.00024  Score=69.78  Aligned_cols=153  Identities=15%  Similarity=0.119  Sum_probs=99.6

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecc
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ  243 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~  243 (430)
                      ++|++|++.++.+..  +.. +..+++|+.|.+.++.- +.  +....++|+.|.+.++. +..+.-..++|+.|++.+.
T Consensus       215 ~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l-~~--l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N  287 (454)
T 1jl5_A          215 LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLL-KT--LPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSEN  287 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCC-SS--CCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS
T ss_pred             CcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcC-Cc--ccccccccCEEECCCCc-ccccCcccCcCCEEECcCC
Confidence            689999999887752  332 67899999999998753 22  22233789999998876 4444334578999998877


Q ss_pred             eeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhH
Q 014141          244 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGL  323 (430)
Q Consensus       244 ~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l  323 (430)
                      .....-.-.++|+.+.+..+...       .+....++|+.|++..+. +.  .+|..+++|+.|+++...-.  .   +
T Consensus       288 ~l~~l~~~~~~L~~L~l~~N~l~-------~i~~~~~~L~~L~Ls~N~-l~--~lp~~~~~L~~L~L~~N~l~--~---l  352 (454)
T 1jl5_A          288 IFSGLSELPPNLYYLNASSNEIR-------SLCDLPPSLEELNVSNNK-LI--ELPALPPRLERLIASFNHLA--E---V  352 (454)
T ss_dssp             CCSEESCCCTTCCEEECCSSCCS-------EECCCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSCCS--C---C
T ss_pred             ccCcccCcCCcCCEEECcCCcCC-------cccCCcCcCCEEECCCCc-cc--cccccCCcCCEEECCCCccc--c---c
Confidence            54321122367888887754332       222222589999988766 43  35555789999988554221  1   2


Q ss_pred             HHHHhhCCCceEEEEEEe
Q 014141          324 SFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       324 ~~lL~~~p~L~~L~l~~~  341 (430)
                      ..   .+++|+.|++...
T Consensus       353 p~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          353 PE---LPQNLKQLHVEYN  367 (454)
T ss_dssp             CC---CCTTCCEEECCSS
T ss_pred             cc---hhhhccEEECCCC
Confidence            22   3689999988653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.05  E-value=0.00023  Score=73.64  Aligned_cols=175  Identities=15%  Similarity=0.085  Sum_probs=91.0

Q ss_pred             CCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCC--ccEE---E
Q 014141          157 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYS--IKEI---E  229 (430)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~--l~~i---~  229 (430)
                      |..+.++++|+.|+|.+..+.+..-...+.++++|+.|.+.++.. ..+..  -..+++|+.|.+.++.-  +..+   -
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~  476 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY-LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF  476 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSE-EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCc-ceeChhhhhcCcccccchhccccccccccCCccc
Confidence            456678899999999988665432223467889999999988752 11110  11346777777766541  0000   0


Q ss_pred             EeCCceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHH-----HhhccCCCceEEEEecceeeecccccC
Q 014141          230 ISAPNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIG-----SIVSYLPQLKTLELDGCNEVFAQFSQR  300 (430)
Q Consensus       230 i~~P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~-----~l~~~~~~l~~L~l~~~~~~~~~~l~~  300 (430)
                      -..++|+.|++.+..+.    ..+.++++|+.+.+..+..........     ..+.++++|+.|++..+. +.  .+|.
T Consensus       477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~--~i~~  553 (680)
T 1ziw_A          477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FD--EIPV  553 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CC--CCCT
T ss_pred             ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CC--CCCH
Confidence            12456777777665332    124456667777666443221100000     124566677777776654 32  2222


Q ss_pred             ----CCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEE
Q 014141          301 ----EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQ  339 (430)
Q Consensus       301 ----~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~  339 (430)
                          .+++|+.|+++...-.  ..  -...+..+++|+.|++.
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~--~l--~~~~~~~l~~L~~L~L~  592 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLN--TL--PASVFNNQVSLKSLNLQ  592 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCC--CC--CTTTTTTCTTCCEEECT
T ss_pred             HHcccccCcceeECCCCCCC--cC--CHhHhCCCCCCCEEECC
Confidence                1445555555322111  00  01234555666666663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.02  E-value=3.6e-05  Score=73.54  Aligned_cols=163  Identities=18%  Similarity=0.182  Sum_probs=86.9

Q ss_pred             CCCceEEEeeEEEcchh---HHHHhh-cCCcccceeeccCCCCce-e-eEecCCCCcceEEEeecCCccEEEEeCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEV---VEFFIH-NCPLLENLRITQSPDLLS-L-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~---l~~ll~-~cp~Le~L~L~~~~~~~~-~-~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~  237 (430)
                      ++|++|+|.++.+++..   +...+. .++.|++|+|.+|..-.. + .+...+++|+.|++.+|. +......      
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~------  144 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACK------  144 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHH------
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHH------
Confidence            67888888888777643   444444 346888888888742110 0 111122456666666554 1100000      


Q ss_pred             EEEeccee-eeecCCCCCceEEEEEeecCcc-hhhHHHHhhccCCCceEEEEecceeeeccc---cc---CCCCccceEE
Q 014141          238 FKYIGQDI-NLHVGSLPQLVDVVFHVTPMVQ-KMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQ---REFPKLMNLN  309 (430)
Q Consensus       238 L~~~~~~~-~~~~~~~~~L~~~~i~~~~~~~-~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~---~~~~~L~~L~  309 (430)
                            .+ .......+.|+.+.+..+.... ....+...+..+++|++|+|..+. +....   +.   ...++|++|+
T Consensus       145 ------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~  217 (372)
T 3un9_A          145 ------DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELN  217 (372)
T ss_dssp             ------HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEE
T ss_pred             ------HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEE
Confidence                  00 0000123455555555433221 112233455677788888887766 43211   11   1256788888


Q ss_pred             EEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          310 ISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       310 l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      |+.+.-.......+...+..+|+|++|++..
T Consensus       218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~  248 (372)
T 3un9_A          218 VAYNGAGDTAALALARAAREHPSLELLHLYF  248 (372)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCCEEeccC
Confidence            8665333333445777888999999999854

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.00  E-value=9.7e-05  Score=69.26  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=69.1

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEEE-eCCceeEEE
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFK  239 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~  239 (430)
                      +++|+.|+|.+..+..-. ...+..+++|+.|.|.++. ++.+.  .-..+++|+.|.+.++. +..+.. ..++|++|.
T Consensus        53 ~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~  129 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELR  129 (332)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEE
T ss_pred             CCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEE
Confidence            479999999988765321 1236789999999999885 33331  12356899999998875 333321 127899999


Q ss_pred             Eecceee----eecCCCCCceEEEEEeecC
Q 014141          240 YIGQDIN----LHVGSLPQLVDVVFHVTPM  265 (430)
Q Consensus       240 ~~~~~~~----~~~~~~~~L~~~~i~~~~~  265 (430)
                      +.+..+.    ..+.++++|+.+.+..+..
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l  159 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPL  159 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence            9877442    2356788999998875543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=96.98  E-value=0.0017  Score=65.50  Aligned_cols=119  Identities=18%  Similarity=0.149  Sum_probs=82.6

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEE-eCCceeEEEE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI-SAPNLLSFKY  240 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i-~~P~L~~L~~  240 (430)
                      ++|++|+|.+..+++-. ..-+.++++|+.|.|.++. ++.+...  ..+++|+.|++.++. +..+.- ..++|++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence            89999999999876421 2346789999999999984 3333221  356899999999876 444321 5689999999


Q ss_pred             ecceee-----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCc--eEEEEecce
Q 014141          241 IGQDIN-----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQL--KTLELDGCN  291 (430)
Q Consensus       241 ~~~~~~-----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l--~~L~l~~~~  291 (430)
                      .+..+.     -.+.++++|+.+.+..+....      .-+..++++  +.|.+..+.
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~------~~~~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ------LDLLPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT------TTTGGGTTSCEEEEEEEESS
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCcccc------CchhhhhhceeeEEEeeccc
Confidence            887442     246678999999998654432      112344444  888887654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.97  E-value=0.00045  Score=67.81  Aligned_cols=158  Identities=15%  Similarity=0.040  Sum_probs=101.9

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEE
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF  238 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L  238 (430)
                      .+.++++|+.|++.+..+++  +   -...++|+.|.+.++.. +.+.--..+++|+.|.+.++. +..+.-..++|++|
T Consensus       190 ~~~~l~~L~~L~l~~N~l~~--l---~~~~~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L  262 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSLKK--L---PDLPLSLESIVAGNNIL-EELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEAL  262 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSS--C---CCCCTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCCEE
T ss_pred             cccCCCCCCEEECCCCcCCc--C---CCCcCcccEEECcCCcC-CcccccCCCCCCCEEECCCCc-CCcccccccccCEE
Confidence            67899999999999887754  1   12346999999999853 333222456889999998875 33333234799999


Q ss_pred             EEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCcc
Q 014141          239 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQE  318 (430)
Q Consensus       239 ~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  318 (430)
                      ++.+......-...++|+.+.++.+...       .+....++|+.|++..+. +..  ++...++|++|+++...-.  
T Consensus       263 ~l~~N~l~~l~~~~~~L~~L~ls~N~l~-------~l~~~~~~L~~L~l~~N~-l~~--i~~~~~~L~~L~Ls~N~l~--  330 (454)
T 1jl5_A          263 NVRDNYLTDLPELPQSLTFLDVSENIFS-------GLSELPPNLYYLNASSNE-IRS--LCDLPPSLEELNVSNNKLI--  330 (454)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCS-------EESCCCTTCCEEECCSSC-CSE--ECCCCTTCCEEECCSSCCS--
T ss_pred             ECCCCcccccCcccCcCCEEECcCCccC-------cccCcCCcCCEEECcCCc-CCc--ccCCcCcCCEEECCCCccc--
Confidence            9987754322223467888888754433       222233689999998776 322  2222358999998553221  


Q ss_pred             chhhHHHHHhhCCCceEEEEEEe
Q 014141          319 TLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       319 ~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                         .+.   ..+++|+.|++...
T Consensus       331 ---~lp---~~~~~L~~L~L~~N  347 (454)
T 1jl5_A          331 ---ELP---ALPPRLERLIASFN  347 (454)
T ss_dssp             ---CCC---CCCTTCCEEECCSS
T ss_pred             ---ccc---ccCCcCCEEECCCC
Confidence               111   12589999999653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=96.92  E-value=0.00033  Score=63.36  Aligned_cols=143  Identities=12%  Similarity=0.142  Sum_probs=98.4

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-EeCCceeEEE
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSFK  239 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i~~P~L~~L~  239 (430)
                      ..+++|+.|++.++.+++-  . -+..+++|+.|.|.++.- +.+..-..+++|+.|.+.++. +..+. +..++|+.|.
T Consensus        38 ~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i-~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~  112 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQI-SDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLF  112 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCC-CCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEE
T ss_pred             hhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCcc-CCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEE
Confidence            4678999999998877542  2 367899999999998853 322223456889999998875 32221 1128899999


Q ss_pred             Eecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEee
Q 014141          240 YIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTA  314 (430)
Q Consensus       240 ~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~  314 (430)
                      +.+..+.  -.+..+++|+.+.+..+.....     ..+..+++|+.|.+..+. +........+++|+.|++....
T Consensus       113 L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~-----~~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          113 LDNNELRDTDSLIHLKNLEILSIRNNKLKSI-----VMLGFLSKLEVLDLHGNE-ITNTGGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             CCSSCCSBSGGGTTCTTCCEEECTTSCCCBC-----GGGGGCTTCCEEECTTSC-CCBCTTSTTCCCCCEEEEEEEE
T ss_pred             ccCCccCCChhhcCcccccEEECCCCcCCCC-----hHHccCCCCCEEECCCCc-CcchHHhccCCCCCEEeCCCCc
Confidence            9877542  1356788899998875544321     245778999999998877 4443222348889999987654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.91  E-value=0.00048  Score=61.69  Aligned_cols=122  Identities=13%  Similarity=0.107  Sum_probs=56.9

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE----EeCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE----ISAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~----i~~P~L~~  237 (430)
                      ++|+.|+|.+..+.+-. ...+.++++|+.|.|.++.. +.+..  -..+++|+.|.+.++. +..+.    -..++|++
T Consensus        35 ~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCcC-CccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCE
Confidence            56777777766554311 12245667777777776632 22111  1233566666665544 22221    12355555


Q ss_pred             EEEecceeee----ecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          238 FKYIGQDINL----HVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       238 L~~~~~~~~~----~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      |.+.+..+..    .+..+++|+.+.+..+.......   ..+..+++|+.|++..+.
T Consensus       112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA---GAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSC
T ss_pred             EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH---HHcCcCcCCCEEECCCCc
Confidence            5555543321    12344555555554332211000   223455566666665554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.88  E-value=0.00043  Score=69.82  Aligned_cols=72  Identities=13%  Similarity=0.095  Sum_probs=29.5

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEec
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG  242 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~  242 (430)
                      +++|++|+|.+..++.  +.. +..  +|+.|.|.++.. +.+.-  .+++|+.|.+.++. +..+.-..++|+.|.+.+
T Consensus        99 l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l-~~lp~--~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~  169 (571)
T 3cvr_A           99 PASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQL-TMLPE--LPALLEYINADNNQ-LTMLPELPTSLEVLSVRN  169 (571)
T ss_dssp             CTTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCC-SCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cCCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcC-CCCCC--cCccccEEeCCCCc-cCcCCCcCCCcCEEECCC
Confidence            4555555555544432  111 111  555555554421 11111  23455555555443 222222334555555544


Q ss_pred             c
Q 014141          243 Q  243 (430)
Q Consensus       243 ~  243 (430)
                      +
T Consensus       170 N  170 (571)
T 3cvr_A          170 N  170 (571)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=96.88  E-value=0.00059  Score=56.87  Aligned_cols=131  Identities=15%  Similarity=0.142  Sum_probs=76.1

Q ss_pred             cCCcccceeeccCCCC-ceeeE-ecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeec
Q 014141          187 NCPLLENLRITQSPDL-LSLKV-VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP  264 (430)
Q Consensus       187 ~cp~Le~L~L~~~~~~-~~~~i-~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~  264 (430)
                      ..+.|+.|.+.+|..- ..+.- ...+++|+.|.+.++. +..+                  -.+..+++|+.+.+..+.
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~N~   82 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV------------------SNLPKLPKLKKLELSENR   82 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC------------------SSCCCCSSCCEEEEESCC
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh------------------hhhccCCCCCEEECcCCc
Confidence            3578999999888532 12211 1234566666666654 2221                  123455666666666444


Q ss_pred             CcchhhHHHHhhccCCCceEEEEecceeeeccc---ccCCCCccceEEEEEeecCccchhh-HHHHHhhCCCceEEEEEE
Q 014141          265 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLG-LSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       265 ~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~-l~~lL~~~p~L~~L~l~~  340 (430)
                      ....   +..++..+++|+.|.+..+. +....   ....+++|++|++....-.  .... ....+..+|+|+.|++..
T Consensus        83 l~~~---~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           83 IFGG---LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT--NLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             CCSC---CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG--TSTTHHHHHHTTCSSCCEETTEE
T ss_pred             CchH---HHHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc--chHHHHHHHHHhCccCcEecCCC
Confidence            3321   11445668899999998876 44321   1223778888888553211  1111 124788999999999877


Q ss_pred             ec
Q 014141          341 WN  342 (430)
Q Consensus       341 ~~  342 (430)
                      ..
T Consensus       157 n~  158 (168)
T 2ell_A          157 RE  158 (168)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=96.70  E-value=0.0005  Score=61.58  Aligned_cols=127  Identities=17%  Similarity=0.141  Sum_probs=80.5

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee--EecCCCCcceEEEeecCCccEEEE----eC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK--VVGSSIPLKCLDIQFCYSIKEIEI----SA  232 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~--i~~~~~~L~~L~l~~c~~l~~i~i----~~  232 (430)
                      .+.++++|++|+|.+..+.+- ....+..+++|+.|.|.++.. +.+.  .-..+++|+.|.+.++. +..+.-    ..
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l  130 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRL  130 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred             HhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCEEEcCCCc-CCCcChhHhccC
Confidence            456788999999988876542 123356788899999888743 2221  11345788888888765 443321    35


Q ss_pred             CceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          233 PNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       233 P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      ++|+.|.+.+..+.    ..+..+++|+.+.+..+.......   ..+..+++|+.|.+.++.
T Consensus       131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH---GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTTTCTTCCEEECCSCC
T ss_pred             CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH---HHHhCCCCCCEEEeeCCc
Confidence            78889988877442    135567889998887554331110   234566677777776665

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.69  E-value=2.2e-05  Score=67.85  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=22.0

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (430)
                      ..+++|++|+|.+..+++  +. .+..+++|+.|.+.++
T Consensus        45 ~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN   80 (198)
T ss_dssp             HHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE
T ss_pred             hcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC
Confidence            455667777777666654  22 3455666666666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.67  E-value=0.00044  Score=59.91  Aligned_cols=144  Identities=15%  Similarity=0.084  Sum_probs=72.7

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEE
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY  240 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~  240 (430)
                      .++|+.|+|.+..++.- ....+..+++|++|.+.++.. +.+..  -..+++|+.|.+.++. +..+.-          
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~----------   93 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN----------   93 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCT----------
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCcc-CccChhhcCCCCCcCEEECCCCc-CCccCH----------
Confidence            46788888888766531 123456788888888887642 22211  1234566666666554 221110          


Q ss_pred             ecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEeecCcc
Q 014141          241 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQE  318 (430)
Q Consensus       241 ~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~  318 (430)
                            ..+..+++|+.+.+..+......   ...+..+++|+.|.+..+. +....  ....+++|++|++....    
T Consensus        94 ------~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~----  159 (208)
T 2o6s_A           94 ------GVFDKLTQLKELALNTNQLQSLP---DGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP----  159 (208)
T ss_dssp             ------TTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC----
T ss_pred             ------hHhcCccCCCEEEcCCCcCcccC---HhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCC----
Confidence                  11234444555544432221100   0234566778888877665 32111  01125677777764321    


Q ss_pred             chhhHHHHHhhCCCceEEEEEE
Q 014141          319 TLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       319 ~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                             +...||+|+.|.+..
T Consensus       160 -------~~~~~~~l~~L~~~~  174 (208)
T 2o6s_A          160 -------WDCTCPGIRYLSEWI  174 (208)
T ss_dssp             -------BCCCTTTTHHHHHHH
T ss_pred             -------eecCCCCHHHHHHHH
Confidence                   112456666665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.60  E-value=0.0011  Score=66.82  Aligned_cols=154  Identities=10%  Similarity=0.004  Sum_probs=88.1

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEec
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIG  242 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~  242 (430)
                      +++|++|+|++..++.  +.   ..+++|+.|.|.++. ++.+..  -..+|+.|.++++. +..+.-..++|+.|++.+
T Consensus        79 ~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~--l~~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~  149 (571)
T 3cvr_A           79 PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPE--LPASLKHLDVDNNQ-LTMLPELPALLEYINADN  149 (571)
T ss_dssp             CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCS
T ss_pred             cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcch--hhcCCCEEECCCCc-CCCCCCcCccccEEeCCC
Confidence            4889999999987763  33   457999999999884 333322  11389999998775 333222567888888887


Q ss_pred             ceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCcc-------ceEEEEEeec
Q 014141          243 QDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKL-------MNLNISFTAA  315 (430)
Q Consensus       243 ~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L-------~~L~l~~~~~  315 (430)
                      +.+...-...++|+.+.+..+.... +.   . +.  ++|+.|+++.+. +.  .+|....+|       +.|+|+.+. 
T Consensus       150 N~l~~lp~~l~~L~~L~Ls~N~L~~-lp---~-l~--~~L~~L~Ls~N~-L~--~lp~~~~~L~~~~~~L~~L~Ls~N~-  218 (571)
T 3cvr_A          150 NQLTMLPELPTSLEVLSVRNNQLTF-LP---E-LP--ESLEALDVSTNL-LE--SLPAVPVRNHHSEETEIFFRCRENR-  218 (571)
T ss_dssp             SCCSCCCCCCTTCCEEECCSSCCSC-CC---C-CC--TTCCEEECCSSC-CS--SCCCCC--------CCEEEECCSSC-
T ss_pred             CccCcCCCcCCCcCEEECCCCCCCC-cc---h-hh--CCCCEEECcCCC-CC--chhhHHHhhhcccccceEEecCCCc-
Confidence            7543212245667777776544321 11   1 11  677777777665 33  222211244       555553321 


Q ss_pred             CccchhhHHHHHhhCCCceEEEEEE
Q 014141          316 NQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       316 ~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                          +..+..-+..+++|+.|++..
T Consensus       219 ----l~~lp~~l~~l~~L~~L~L~~  239 (571)
T 3cvr_A          219 ----ITHIPENILSLDPTCTIILED  239 (571)
T ss_dssp             ----CCCCCGGGGGSCTTEEEECCS
T ss_pred             ----ceecCHHHhcCCCCCEEEeeC
Confidence                112233333467777776644

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=96.53  E-value=0.00043  Score=56.44  Aligned_cols=127  Identities=16%  Similarity=0.129  Sum_probs=71.4

Q ss_pred             cCCcccceeeccCCCC-ceee-EecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeec
Q 014141          187 NCPLLENLRITQSPDL-LSLK-VVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP  264 (430)
Q Consensus       187 ~cp~Le~L~L~~~~~~-~~~~-i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~  264 (430)
                      ..++|+.|.+.+|..- ..+. ....+++|+.|.+.++. +..+                  -.+..+++|+.+.+..+.
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~------------------~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI------------------ANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC------------------TTCCCCTTCCEEECCSSC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc------------------hhhhcCCCCCEEECCCCc
Confidence            4578999999998532 1221 12345677777776664 2222                  113345566666665443


Q ss_pred             CcchhhHHHHhhccCCCceEEEEecceeeecc---cccCCCCccceEEEEEeecCccchhh-HHHHHhhCCCceEEEE
Q 014141          265 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQREFPKLMNLNISFTAANQETLLG-LSFIMKACPFLEKLVL  338 (430)
Q Consensus       265 ~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~---~l~~~~~~L~~L~l~~~~~~~~~~~~-l~~lL~~~p~L~~L~l  338 (430)
                      ....   +...+..+++|+.|.+..+. +...   .....+++|++|+++...-.  .... ....+..+|+|+.|++
T Consensus        76 i~~~---~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           76 VSGG---LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT--NLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CCSC---THHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG--GSTTHHHHHHHHCTTCCEETT
T ss_pred             ccch---HHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCccc--chHHHHHHHHHHCCCcccccC
Confidence            3221   22445568888888887776 4332   11223777888877443211  1111 1257888899988865

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.49  E-value=0.0029  Score=59.64  Aligned_cols=58  Identities=14%  Similarity=0.049  Sum_probs=31.9

Q ss_pred             hhccCCCceEEEEecceeeecccccCC-CCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          275 IVSYLPQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       275 l~~~~~~l~~L~l~~~~~~~~~~l~~~-~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      .+.++++|+.|+++.+. +.  .+|.. |.+|++|.+...    .....+.. +...++|+.+++..
T Consensus       197 ~f~~l~~L~~LdLs~N~-l~--~lp~~~~~~L~~L~~l~~----~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          197 VFHGASGPVILDISRTR-IH--SLPSYGLENLKKLRARST----YNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TTTTEECCSEEECTTSC-CC--CCCSSSCTTCCEEECTTC----TTCCCCCC-TTTCCSCCEEECSC
T ss_pred             HhccCcccchhhcCCCC-cC--ccChhhhccchHhhhccC----CCcCcCCC-chhCcChhhCcCCC
Confidence            44666777788877665 32  23333 777777774221    11111221 45677777777743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.46  E-value=0.012  Score=59.83  Aligned_cols=58  Identities=16%  Similarity=0.072  Sum_probs=36.7

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY  223 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~  223 (430)
                      +++++|+|++..++.- -..-+.++++|+.|+|.+|. ++.+...  ..+++|+.|.+.++.
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~  111 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP  111 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc
Confidence            4789999988765431 01235678999999998884 3333221  245677777776654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.30  E-value=0.0034  Score=52.68  Aligned_cols=131  Identities=13%  Similarity=0.088  Sum_probs=68.6

Q ss_pred             hcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeec
Q 014141          186 HNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP  264 (430)
Q Consensus       186 ~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~  264 (430)
                      ..|+.|+.|.+.++.. +.+. +....++|+.|.+.++. +..+.                  .+..+++|+.+.+..+.
T Consensus        16 ~~~~~L~~L~l~~n~l-~~i~~~~~~~~~L~~L~Ls~N~-l~~~~------------------~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNE-IRKLD------------------GFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSC-CCEEC------------------CCCCCSSCCEEECCSSC
T ss_pred             CCcCCceEEEeeCCCC-chhHHhhhcCCCCCEEECCCCC-CCccc------------------ccccCCCCCEEECCCCc
Confidence            3588999999998843 3221 12222477777777765 33321                  12334455555544332


Q ss_pred             CcchhhHHHHhhccCCCceEEEEecceeeeccc---ccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          265 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       265 ~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      ......   .++..+++|+.|.+..+. +....   ....+++|++|++....-... ...-..++..+|+|+.|++...
T Consensus        76 l~~~~~---~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           76 ICRIGE---GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCEECS---CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEEC
T ss_pred             ccccCc---chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcC
Confidence            211000   234567778888877665 32211   111266777777744321111 0111235778888888887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.22  E-value=0.00055  Score=59.31  Aligned_cols=62  Identities=18%  Similarity=0.108  Sum_probs=41.3

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  223 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~  223 (430)
                      +.++++|++|+|.+..++.- ....+..+++|+.|.|.++.. +.+..  -..+++|+.|.+.++.
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQ  111 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             hcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEEEcCCCc
Confidence            46789999999998876531 223457889999999988742 22211  1244677777776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.20  E-value=0.0013  Score=57.92  Aligned_cols=142  Identities=14%  Similarity=0.067  Sum_probs=75.7

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  241 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~  241 (430)
                      ++|+.|.|.+..+..- ....+..+++|+.|.|.++.. +.+..  -..+++|+.|.+.++. +..+.-           
T Consensus        40 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~-----------  105 (229)
T 3e6j_A           40 TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ-LTVLPS-----------  105 (229)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCCCCT-----------
T ss_pred             CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCCc-CCccCh-----------
Confidence            8899999998877542 123356789999999988753 33221  1234667777766654 222110           


Q ss_pred             cceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEee-cCcc
Q 014141          242 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTA-ANQE  318 (430)
Q Consensus       242 ~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~-~~~~  318 (430)
                           ..+..+++|+.+.+..+...    .+..-+..+++|+.|.+..+. +....  ....+++|++|++.... ....
T Consensus       106 -----~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          106 -----AVFDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             -----TTTTTCTTCCEEECCSSCCC----SCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             -----hHhCcchhhCeEeccCCccc----ccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence                 11234455555555433222    111223677888888887765 33211  11226677777774331 1111


Q ss_pred             -chhhHHHHHhh
Q 014141          319 -TLLGLSFIMKA  329 (430)
Q Consensus       319 -~~~~l~~lL~~  329 (430)
                       +...+..++..
T Consensus       176 ~~~~~l~~~~~~  187 (229)
T 3e6j_A          176 RDIMYLRNWVAD  187 (229)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             chhHHHHHHHHh
Confidence             24445555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.12  E-value=0.0016  Score=57.00  Aligned_cols=144  Identities=10%  Similarity=0.062  Sum_probs=70.3

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  241 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~  241 (430)
                      +.++.|.|.+..++.-.-...+..+++|+.|.|.++. ++.+..  -..+++|+.|.+.++. +..+.            
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~------------   97 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENVQ------------   97 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCC------------
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCccC------------
Confidence            5577888887765442212335677888888887764 222211  1233556666655543 11111            


Q ss_pred             cceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCccceEEEEEee-cCcc
Q 014141          242 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMNLNISFTA-ANQE  318 (430)
Q Consensus       242 ~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L~~L~l~~~~-~~~~  318 (430)
                          +-.+.++++|+.+.+..+......   ...+..+++|+.|.+..+. +...  .....+++|++|++.... ....
T Consensus        98 ----~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           98 ----HKMFKGLESLKTLMLRSNRITCVG---NDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             ----GGGGTTCSSCCEEECTTSCCCCBC---TTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             ----HhHhcCCcCCCEEECCCCcCCeEC---HhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence                011334455555554433221100   0224566777888776665 3221  111126677777764331 1223


Q ss_pred             chhhHHHHHhh
Q 014141          319 TLLGLSFIMKA  329 (430)
Q Consensus       319 ~~~~l~~lL~~  329 (430)
                      ...++...++.
T Consensus       170 ~l~~l~~~~~~  180 (220)
T 2v70_A          170 YLAWLGEWLRK  180 (220)
T ss_dssp             GGHHHHHHHHH
T ss_pred             chHHHHHHHHh
Confidence            44455555553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.10  E-value=0.0088  Score=55.70  Aligned_cols=93  Identities=12%  Similarity=0.193  Sum_probs=47.3

Q ss_pred             eeEEEEEEecCCCCCccHhHHHHHHhhcCcEEEEEEcCCCC--CCCceeecccc---ccccCCCC-CCCC--------CC
Q 014141           99 INQFRICFRLDAKHKCNITNWVNTAIAKNVRNFELDLSPGT--YDNYYEIPQEC---YKNLQSGC-GLSG--------IK  164 (430)
Q Consensus        99 l~~l~l~~~~~~~~~~~v~~wl~~~~~~~v~~L~l~~~~~~--~~~~~~lp~~~---~~~l~~p~-~~~~--------~~  164 (430)
                      +..+.+...+..   ..+ .++... ..+++.|++....-.  ......+|...   +....+|. .|.+        ++
T Consensus        27 l~~L~l~g~i~~---~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~  101 (329)
T 3sb4_A           27 ITHLTLTGKLNA---EDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ  101 (329)
T ss_dssp             CSEEEEEEEECH---HHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred             eeEEEEeccccH---HHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence            788888765432   112 233222 347898888665322  00001122100   01123443 3446        78


Q ss_pred             CCceEEEeeEEEcchhH-HHHhhcCCcccceeeccC
Q 014141          165 SLRSLTLCAVNVTGEVV-EFFIHNCPLLENLRITQS  199 (430)
Q Consensus       165 ~L~~L~L~~~~~~~~~l-~~ll~~cp~Le~L~L~~~  199 (430)
                      +|++|.|.+ .++.  + ...+.+|++|+.|.+.+.
T Consensus       102 ~L~~l~L~~-~i~~--I~~~aF~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          102 TLEKVILSE-KIKN--IEDAAFKGCDNLKICQIRKK  134 (329)
T ss_dssp             TCCC-CBCT-TCCE--ECTTTTTTCTTCCEEEBCCS
T ss_pred             CCcEEECCc-cccc--hhHHHhhcCcccceEEcCCC
Confidence            888888876 3321  1 123568899998888755

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.03  E-value=0.00023  Score=61.28  Aligned_cols=149  Identities=15%  Similarity=0.111  Sum_probs=74.1

Q ss_pred             CCCceEEEeeEEEcch-----hHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEE
Q 014141          164 KSLRSLTLCAVNVTGE-----VVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSF  238 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~-----~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L  238 (430)
                      ++++.+.+..+.+++.     .+...+..++.|+.|.+.++. ++.+..-..+++|+.|.+.++. +..+    |     
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~-l~~l----~-----   86 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKI----E-----   86 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEE-ECSC----S-----
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCC-cccc----c-----
Confidence            4555555555555432     244467789999999998873 2222211233566666666553 1111    0     


Q ss_pred             EEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc---ccCCCCccceEEEEEeec
Q 014141          239 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---SQREFPKLMNLNISFTAA  315 (430)
Q Consensus       239 ~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l~~~~~~L~~L~l~~~~~  315 (430)
                              -.+..+++|+.+.+..+.... ..    -+..+++|+.|.+..+. +....   ....+++|++|++....-
T Consensus        87 --------~~~~~~~~L~~L~L~~N~l~~-l~----~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           87 --------NLDAVADTLEELWISYNQIAS-LS----GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             --------SHHHHHHHCSEEEEEEEECCC-HH----HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             --------chhhcCCcCCEEECcCCcCCc-CC----ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence                    011123445555555433221 11    13445667777776655 32211   112366777777643311


Q ss_pred             Ccc-c-----hhhHHHHHhhCCCceEEE
Q 014141          316 NQE-T-----LLGLSFIMKACPFLEKLV  337 (430)
Q Consensus       316 ~~~-~-----~~~l~~lL~~~p~L~~L~  337 (430)
                      ... .     ......++..+|+|+.|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC
Confidence            000 0     112244577888888775

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=95.87  E-value=0.0032  Score=55.06  Aligned_cols=145  Identities=11%  Similarity=0.021  Sum_probs=73.0

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  241 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~  241 (430)
                      ++|+.|+|.+..++.-. ...+..+++|+.|.|.++.. +.+..  -..+++|+.|.+.++. +..+.-           
T Consensus        32 ~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~-----------   97 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNK-ITELPK-----------   97 (220)
T ss_dssp             TTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSSCC-CEECTTTTTTCSSCCEEECCSSC-CCCCCT-----------
T ss_pred             cCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCCcC-CCcCHHHhhCCcCCCEEECCCCc-CCccCH-----------
Confidence            67888888877654311 12356678888888887742 22211  1233556666655543 221110           


Q ss_pred             cceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEee-cCcc
Q 014141          242 GQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTA-ANQE  318 (430)
Q Consensus       242 ~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~-~~~~  318 (430)
                           ..+.++++|+.+.+..+......   ...+..+++|+.|++..+. +....  ....+++|++|+|.... ....
T Consensus        98 -----~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  168 (220)
T 2v9t_B           98 -----SLFEGLFSLQLLLLNANKINCLR---VDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFICDC  168 (220)
T ss_dssp             -----TTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             -----hHccCCCCCCEEECCCCCCCEeC---HHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence                 11234455555555433222110   0234567778888877665 32211  11125677777764331 1124


Q ss_pred             chhhHHHHHhhCC
Q 014141          319 TLLGLSFIMKACP  331 (430)
Q Consensus       319 ~~~~l~~lL~~~p  331 (430)
                      ...++...++..+
T Consensus       169 ~l~~l~~~l~~~~  181 (220)
T 2v9t_B          169 HLKWLADYLHTNP  181 (220)
T ss_dssp             GGHHHHHHHHHCC
T ss_pred             ccHHHHHHHHhCC
Confidence            5556666666544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=95.79  E-value=0.017  Score=58.67  Aligned_cols=103  Identities=17%  Similarity=0.131  Sum_probs=67.1

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE---E-eC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE---I-SA  232 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~---i-~~  232 (430)
                      .+.++++|++|+|+++.++.- -...+.++++|+.|.|.++. ++.+...  ..+++|+.|.+.++. +..+.   + ..
T Consensus        71 ~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L  147 (635)
T 4g8a_A           71 SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHL  147 (635)
T ss_dssp             TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTC
T ss_pred             HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcC
Confidence            567889999999998866431 01235688999999999885 4443221  356889999988775 33321   2 34


Q ss_pred             CceeEEEEecceee-----eecCCCCCceEEEEEeec
Q 014141          233 PNLLSFKYIGQDIN-----LHVGSLPQLVDVVFHVTP  264 (430)
Q Consensus       233 P~L~~L~~~~~~~~-----~~~~~~~~L~~~~i~~~~  264 (430)
                      ++|++|++.+..+.     ..+..+++|+.+.+..+.
T Consensus       148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            77888887765431     233456777777776543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=95.67  E-value=0.0039  Score=58.97  Aligned_cols=125  Identities=14%  Similarity=0.088  Sum_probs=57.7

Q ss_pred             CCCceEEEeeEEEcchhHHHHhh-cCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEE----eCCcee
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIH-NCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEI----SAPNLL  236 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i----~~P~L~  236 (430)
                      +.|+.|+|++..++.-.- ..+. ++++|+.|.|.++. ++.+..  -..+++|+.|.+.++. +..+.-    ..++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCCCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCCCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence            345666666554433111 1122 55666666666553 222211  1233556666665544 333321    235666


Q ss_pred             EEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          237 SFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       237 ~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      .|.+.+..+.    ..+.++++|+.+.+..+........+..-+..+++|+.|++..+.
T Consensus       116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            6666655332    124456667766666443321111111111456777777776665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=95.65  E-value=0.0087  Score=56.29  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=48.7

Q ss_pred             CCCceEEEeeEEEcchhHH-HHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE----EeCCcee
Q 014141          164 KSLRSLTLCAVNVTGEVVE-FFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE----ISAPNLL  236 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~-~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~----i~~P~L~  236 (430)
                      ++|++|+|.+..++.  +. ..++++++|+.|.|.++...+.+...  ..++++..+.+..+..+..+.    -..++|+
T Consensus        30 ~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~  107 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  107 (350)
T ss_dssp             TTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred             CCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence            678888888776542  21 23567788888888887654443221  234566666655555555553    1347788


Q ss_pred             EEEEeccee
Q 014141          237 SFKYIGQDI  245 (430)
Q Consensus       237 ~L~~~~~~~  245 (430)
                      +|.+.+..+
T Consensus       108 ~L~l~~n~l  116 (350)
T 4ay9_X          108 YLLISNTGI  116 (350)
T ss_dssp             EEEEEEECC
T ss_pred             ccccccccc
Confidence            888776643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.51  E-value=0.0023  Score=64.63  Aligned_cols=102  Identities=19%  Similarity=0.254  Sum_probs=52.4

Q ss_pred             CCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecc
Q 014141          165 SLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ  243 (430)
Q Consensus       165 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~  243 (430)
                      .|+.|+|++..++.  +.. +..+++|+.|.|.++.- +.+ ..-..+++|+.|.++++. +..+               
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~-l~~l---------------  501 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA-LENV---------------  501 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-CCCC---------------
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCC-CCCC---------------
Confidence            47777777766643  233 56677777777777642 221 111234555666555543 1111               


Q ss_pred             eeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          244 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       244 ~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                        + .++.+++|+.+.++.+......  ....+..+++|+.|.+.++.
T Consensus       502 --p-~l~~l~~L~~L~Ls~N~l~~~~--~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          502 --D-GVANLPRLQELLLCNNRLQQSA--AIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             --G-GGTTCSSCCEEECCSSCCCSSS--TTGGGGGCTTCCEEECTTSG
T ss_pred             --c-ccCCCCCCcEEECCCCCCCCCC--CcHHHhcCCCCCEEEecCCc
Confidence              1 2344555555555533322110  01334567777777777665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.27  E-value=0.003  Score=53.69  Aligned_cols=20  Identities=20%  Similarity=0.287  Sum_probs=14.2

Q ss_pred             hHHHHhhcCCcccceeeccC
Q 014141          180 VVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       180 ~l~~ll~~cp~Le~L~L~~~  199 (430)
                      .+..++..++.|++|.|.+|
T Consensus        27 ~l~~~l~~~~~L~~L~L~~n   46 (185)
T 1io0_A           27 TLKRIQNNDPDLEEVNLNNI   46 (185)
T ss_dssp             HHHHHHTTCTTCCEEECTTC
T ss_pred             HHHHHHhcCCCCCEEEecCC
Confidence            45666677777777777776

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=95.27  E-value=0.17  Score=47.61  Aligned_cols=11  Identities=0%  Similarity=-0.082  Sum_probs=6.7

Q ss_pred             CCceeEEEEec
Q 014141          232 APNLLSFKYIG  242 (430)
Q Consensus       232 ~P~L~~L~~~~  242 (430)
                      .|+|+.|.+.+
T Consensus       138 l~~L~~L~l~~  148 (362)
T 2ra8_A          138 FAHFEGLFWGD  148 (362)
T ss_dssp             HTTCSEEEECC
T ss_pred             cchhhheeecC
Confidence            35677776643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=95.14  E-value=0.023  Score=49.75  Aligned_cols=126  Identities=17%  Similarity=0.107  Sum_probs=67.9

Q ss_pred             cCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEeecCccchhhHHHH
Q 014141          249 VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQETLLGLSFI  326 (430)
Q Consensus       249 ~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  326 (430)
                      +.++++|+.+.+..+......   ...+..+++|+.|++..+. +....  ....+++|++|+|....     +..+..-
T Consensus        60 ~~~l~~L~~L~L~~N~l~~i~---~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~-----l~~lp~~  130 (229)
T 3e6j_A           60 FDSLINLKELYLGSNQLGALP---VGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNK-----LTELPRG  130 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-----CCSCCTT
T ss_pred             hhCccCCcEEECCCCCCCCcC---hhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCc-----ccccCcc
Confidence            345566666666543321100   0345677888888887776 43211  11226777887774432     2233344


Q ss_pred             HhhCCCceEEEEEEeccccccccCcccc-c-cCcCCCccEEEEee--eecChhhHH-HHHHHHhccccc
Q 014141          327 MKACPFLEKLVLQIWNNGRRIGKKRHQI-S-KHSHQHLKLVELQG--FNGREIDFE-LAFYVFENATML  390 (430)
Q Consensus       327 L~~~p~L~~L~l~~~~~~~~~~~~~~~~-~-~~~~~~L~~v~i~~--~~g~~~e~~-l~~~ll~~a~~L  390 (430)
                      +..+++|+.|++....-    .   ..+ . -..+++|+.+.+.+  +.+...++. +..++..+...+
T Consensus       131 ~~~l~~L~~L~L~~N~l----~---~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~  192 (229)
T 3e6j_A          131 IERLTHLTHLALDQNQL----K---SIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIA  192 (229)
T ss_dssp             GGGCTTCSEEECCSSCC----C---CCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGE
T ss_pred             cccCCCCCEEECCCCcC----C---ccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCcccc
Confidence            57889999998854321    1   111 1 12457888888876  444443344 444555555444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.01  E-value=0.0017  Score=61.85  Aligned_cols=36  Identities=8%  Similarity=0.117  Sum_probs=22.2

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccC
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~  199 (430)
                      ++|++|+|+++.+++..+..+...+++|+.|+|.+|
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence            466666666666655555555555566666666666

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=94.81  E-value=0.05  Score=47.27  Aligned_cols=87  Identities=13%  Similarity=0.030  Sum_probs=52.5

Q ss_pred             cCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc--ccCCCCccceEEEEEeecCccchhhHHHH
Q 014141          249 VGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF--SQREFPKLMNLNISFTAANQETLLGLSFI  326 (430)
Q Consensus       249 ~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~l~~l  326 (430)
                      +.++++|+.+.+..+......   ...+.++++|+.|.+..+. +....  ....+++|++|+|....-....    ...
T Consensus        76 ~~~l~~L~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~  147 (220)
T 2v9t_B           76 FQGLRSLNSLVLYGNKITELP---KSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIA----KGT  147 (220)
T ss_dssp             TTTCSSCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC----TTT
T ss_pred             hhCCcCCCEEECCCCcCCccC---HhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEEC----HHH
Confidence            445667777776644332110   0446788999999998876 43221  1112678888888554222111    134


Q ss_pred             HhhCCCceEEEEEEecc
Q 014141          327 MKACPFLEKLVLQIWNN  343 (430)
Q Consensus       327 L~~~p~L~~L~l~~~~~  343 (430)
                      +..+++|+.|++...+.
T Consensus       148 ~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          148 FSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             TTTCTTCCEEECCSSCE
T ss_pred             HhCCCCCCEEEeCCCCc
Confidence            66789999999976543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=94.47  E-value=0.018  Score=49.01  Aligned_cols=59  Identities=10%  Similarity=0.037  Sum_probs=35.1

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  223 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~  223 (430)
                      ++|+.|.|.+..++.-.-..++...++|+.|.|.++.. +.+..  -..+++|+.|.+.+..
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCC-CCcCHhHcCCcccCCEEECCCCc
Confidence            47888888887665422222456778888888887742 22211  1234667777766654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=94.34  E-value=0.018  Score=58.02  Aligned_cols=151  Identities=15%  Similarity=0.138  Sum_probs=85.6

Q ss_pred             CCCCCCCCceEE-EeeEEEcc--------hhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE
Q 014141          159 GLSGIKSLRSLT-LCAVNVTG--------EVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE  229 (430)
Q Consensus       159 ~~~~~~~L~~L~-L~~~~~~~--------~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~  229 (430)
                      .+.++++|+.|+ +....+.+        ..+..+-  ...|+.|.|.++. ++.+.--..+++|+.|.++++. +..  
T Consensus       404 ~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~-l~~lp~~~~l~~L~~L~Ls~N~-l~~--  477 (567)
T 1dce_A          404 TLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLHLAHKD-LTVLCHLEQLLLVTHLDLSHNR-LRA--  477 (567)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSC-CSSCCCGGGGTTCCEEECCSSC-CCC--
T ss_pred             HHHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEEecCCC-CCCCcCccccccCcEeecCccc-ccc--
Confidence            345678888887 44332211        1122221  2468999999884 3322112334566666666554 111  


Q ss_pred             EeCCceeEEEEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccc
Q 014141          230 ISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLM  306 (430)
Q Consensus       230 i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~  306 (430)
                                     ++-.++++++|+.+.++.+.... +    .-+..+++|+.|.++.+. +.....|..   +++|+
T Consensus       478 ---------------lp~~~~~l~~L~~L~Ls~N~l~~-l----p~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~  536 (567)
T 1dce_A          478 ---------------LPPALAALRCLEVLQASDNALEN-V----DGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLV  536 (567)
T ss_dssp             ---------------CCGGGGGCTTCCEEECCSSCCCC-C----GGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCC
T ss_pred             ---------------cchhhhcCCCCCEEECCCCCCCC-C----cccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCC
Confidence                           11234566777777776544332 1    235788999999998886 443321332   78888


Q ss_pred             eEEEEEeecCccchhhHHHHHhhCCCceEEE
Q 014141          307 NLNISFTAANQETLLGLSFIMKACPFLEKLV  337 (430)
Q Consensus       307 ~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~  337 (430)
                      .|+|+...-.. .......++..+|+|+.|.
T Consensus       537 ~L~L~~N~l~~-~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          537 LLNLQGNSLCQ-EEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             EEECTTSGGGG-SSSCTTHHHHHCTTCSEEE
T ss_pred             EEEecCCcCCC-CccHHHHHHHHCcccCccC
Confidence            88885432111 1112456778899999985

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=93.85  E-value=0.027  Score=47.62  Aligned_cols=122  Identities=19%  Similarity=0.188  Sum_probs=75.1

Q ss_pred             HHHhhccCCCceEEEEecc-eeeeccc---c---cCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEeccc
Q 014141          272 IGSIVSYLPQLKTLELDGC-NEVFAQF---S---QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNG  344 (430)
Q Consensus       272 ~~~l~~~~~~l~~L~l~~~-~~~~~~~---l---~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~  344 (430)
                      +...+...++|+.|.+..+ . +....   +   ....++|++|+|+...-+......+...+...++|++|+|....  
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~--  104 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF--  104 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC--
T ss_pred             HHHHHhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc--
Confidence            3467788888999998776 4 33211   1   11256888888866544434455678888999999999985432  


Q ss_pred             cccccCcccc--c-cCcCCCccEEEE--eeee-cChhhHHHHHHHHhcccccccEEEecCC
Q 014141          345 RRIGKKRHQI--S-KHSHQHLKLVEL--QGFN-GREIDFELAFYVFENATMLEKMIIKPSG  399 (430)
Q Consensus       345 ~~~~~~~~~~--~-~~~~~~L~~v~i--~~~~-g~~~e~~l~~~ll~~a~~Le~m~i~~~~  399 (430)
                        ..+.+...  . -....+|+.+.+  .+-. |.+.-..+++ .++..+.|+++.+....
T Consensus       105 --i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          105 --ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             --CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCSS
T ss_pred             --CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-HHHhCCCcCEEeccCCC
Confidence              22222111  1 123567999999  4433 3333344554 55566889999986553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=93.35  E-value=0.019  Score=50.05  Aligned_cols=81  Identities=12%  Similarity=0.104  Sum_probs=48.5

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEE----EeCC
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIE----ISAP  233 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~----i~~P  233 (430)
                      +.++++|++|+|.+..++.-. ...+.++++|+.|.|.++.. +.+..  -..+++|+.|.+.++. +..+.    ...+
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~  129 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRL-ENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLS  129 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCC-CCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCT
T ss_pred             hccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCcc-CccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCc
Confidence            467899999999888665311 12356789999999988753 22111  1245677777777654 22221    1235


Q ss_pred             ceeEEEEecc
Q 014141          234 NLLSFKYIGQ  243 (430)
Q Consensus       234 ~L~~L~~~~~  243 (430)
                      +|+.|++.+.
T Consensus       130 ~L~~L~L~~N  139 (220)
T 2v70_A          130 SVRLLSLYDN  139 (220)
T ss_dssp             TCSEEECTTS
T ss_pred             cCCEEECCCC
Confidence            5666655554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=93.04  E-value=0.029  Score=47.77  Aligned_cols=106  Identities=15%  Similarity=0.090  Sum_probs=59.6

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecCCccEEEEeCCceeEEEE
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKY  240 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~  240 (430)
                      +++|+.|.|.+..++.  +...+.++++|+.|.|.++.. +.+..  -..+++|+.|.+.+.. +..+.-          
T Consensus        30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~----------   95 (193)
T 2wfh_A           30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNR-LRCIPP----------   95 (193)
T ss_dssp             CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC-CCBCCT----------
T ss_pred             CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcC-CEeCHhHccCCCCCCEEECCCCc-cCEeCH----------
Confidence            3689999999887753  334567889999999988743 22211  1234566666666543 222110          


Q ss_pred             ecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          241 IGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       241 ~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                            ..+.++++|+.+.+..+.......   ..+..+++|+.|.+..++
T Consensus        96 ------~~f~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           96 ------RTFDGLKSLRLLSLHGNDISVVPE---GAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             ------TTTTTCTTCCEEECCSSCCCBCCT---TTTTTCTTCCEEECCSSC
T ss_pred             ------HHhCCCCCCCEEECCCCCCCeeCh---hhhhcCccccEEEeCCCC
Confidence                  123345555555555333221000   334567788888887766

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=92.60  E-value=0.13  Score=48.31  Aligned_cols=143  Identities=17%  Similarity=0.159  Sum_probs=82.2

Q ss_pred             CCcccceeeccCCCCceeeEe--c-CCCCcceEEEeecCCccEEEE----eCCceeEEEEecceeee----ecCCCCCce
Q 014141          188 CPLLENLRITQSPDLLSLKVV--G-SSIPLKCLDIQFCYSIKEIEI----SAPNLLSFKYIGQDINL----HVGSLPQLV  256 (430)
Q Consensus       188 cp~Le~L~L~~~~~~~~~~i~--~-~~~~L~~L~l~~c~~l~~i~i----~~P~L~~L~~~~~~~~~----~~~~~~~L~  256 (430)
                      .+.++.|.|.++. ++.+...  . .+++|+.|.+.++. +..+.-    ..++|+.|++.+..+..    .+.++++|+
T Consensus        38 ~~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           38 PSYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             CTTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            3558899998874 3333221  1 45889999998775 555431    34788888888775432    345677888


Q ss_pred             EEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc---ccc--CCCCccceEEEEEeecCccchhhHHHHHhhCC
Q 014141          257 DVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ---FSQ--REFPKLMNLNISFTAANQETLLGLSFIMKACP  331 (430)
Q Consensus       257 ~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~---~l~--~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p  331 (430)
                      .+.+..+......   ...+..+++|+.|.+..+. +...   .+.  ..+++|++|+|+...-....    ...+...|
T Consensus       116 ~L~L~~N~i~~~~---~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~----~~~~~~l~  187 (361)
T 2xot_A          116 VLLLYNNHIVVVD---RNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP----LTDLQKLP  187 (361)
T ss_dssp             EEECCSSCCCEEC---TTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCC----HHHHHHSC
T ss_pred             EEECCCCcccEEC---HHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccC----HHHhhhcc
Confidence            8887754433111   1345677888888887766 3321   111  12667777777543221111    13444555


Q ss_pred             C--ceEEEEEE
Q 014141          332 F--LEKLVLQI  340 (430)
Q Consensus       332 ~--L~~L~l~~  340 (430)
                      .  |+.|.++.
T Consensus       188 ~~~l~~l~l~~  198 (361)
T 2xot_A          188 AWVKNGLYLHN  198 (361)
T ss_dssp             HHHHTTEECCS
T ss_pred             HhhcceEEecC
Confidence            4  35666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=92.58  E-value=0.032  Score=46.56  Aligned_cols=59  Identities=17%  Similarity=0.035  Sum_probs=34.7

Q ss_pred             CCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141          163 IKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  223 (430)
Q Consensus       163 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~  223 (430)
                      +++|+.|+|.+..+..- ....+..+++|+.|.+.++.- +.+..  -..+++|+.|.+.++.
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCCCC
Confidence            37788888887766531 122356778888888887742 22211  1234566666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=91.77  E-value=0.027  Score=58.54  Aligned_cols=104  Identities=15%  Similarity=0.170  Sum_probs=64.8

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE-ecCCCCcceEEEeecCCccEEE---EeCCc
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV-VGSSIPLKCLDIQFCYSIKEIE---ISAPN  234 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i-~~~~~~L~~L~l~~c~~l~~i~---i~~P~  234 (430)
                      .+..+++|+.|+|.+..+..  +..-+..++.|+.|.|.++..- .+.- -..+++|+.|.++++. +..+.   -..++
T Consensus       219 ~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~  294 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ  294 (727)
T ss_dssp             ---CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred             hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence            45577888888888876652  2222337888888888877432 2211 1245778888887765 33331   13467


Q ss_pred             eeEEEEeccee---eeecCCCCCceEEEEEeecCc
Q 014141          235 LLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMV  266 (430)
Q Consensus       235 L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~  266 (430)
                      |++|.+.+..+   +..++.+++|+.+.+..+...
T Consensus       295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             CCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            88888877643   334667888888888766554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=91.74  E-value=0.043  Score=45.70  Aligned_cols=63  Identities=16%  Similarity=0.093  Sum_probs=41.4

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  223 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~  223 (430)
                      .+.++++|++|+|.+..++.- ....+..+++|+.|.|.++.. +.+..  -..+++|+.|.+.++.
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~  111 (177)
T 2o6r_A           47 VFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQ  111 (177)
T ss_dssp             TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEEECcCCc
Confidence            346789999999998877531 123457899999999998743 22211  1234667777766554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=91.05  E-value=0.044  Score=46.61  Aligned_cols=65  Identities=15%  Similarity=0.045  Sum_probs=42.1

Q ss_pred             CCCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141          157 GCGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  223 (430)
Q Consensus       157 p~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~  223 (430)
                      |..+.++++|+.|+|++..++.- ....+.++++|+.|.|.++.. +.+..  -..+++|+.|.+.+..
T Consensus        47 p~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l-~~i~~~~f~~l~~L~~L~L~~N~  113 (193)
T 2wfh_A           47 PKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRL-RCIPPRTFDGLKSLRLLSLHGND  113 (193)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSC
T ss_pred             HHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCcc-CEeCHHHhCCCCCCCEEECCCCC
Confidence            34556889999999998877642 122356889999999998752 22211  1234667777766554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=89.65  E-value=0.056  Score=56.13  Aligned_cols=104  Identities=15%  Similarity=0.056  Sum_probs=67.5

Q ss_pred             HHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeecCCccEEE---EeCCceeEEEEeccee---eeecCCCCC
Q 014141          182 EFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFCYSIKEIE---ISAPNLLSFKYIGQDI---NLHVGSLPQ  254 (430)
Q Consensus       182 ~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c~~l~~i~---i~~P~L~~L~~~~~~~---~~~~~~~~~  254 (430)
                      ...+..++.|+.|.|.++... .+. -...+++|+.|.+.++. +..+.   -..++|+.|++.+..+   +-.++++++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            345678899999999998643 221 11245889999998875 44332   1457899999987754   334567788


Q ss_pred             ceEEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          255 LVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       255 L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                      |+.+.+..+...    .+..-+..+++|+.|.|..+.
T Consensus       295 L~~L~L~~N~l~----~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          295 LKYFYFFDNMVT----TLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             CSEEECCSSCCC----CCCSSTTSCTTCCCEECTTSC
T ss_pred             CCEEECCCCCCC----ccChhhhcCCCccEEeCCCCc
Confidence            998888755432    112235778899999987765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=89.58  E-value=0.14  Score=43.35  Aligned_cols=62  Identities=15%  Similarity=0.093  Sum_probs=42.2

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeE--ecCCCCcceEEEeecC
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKV--VGSSIPLKCLDIQFCY  223 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i--~~~~~~L~~L~l~~c~  223 (430)
                      +..+++|++|+|.+..++.- ....+.+.+.|+.|.|.++.. +.+..  -..+++|+.|.+.+..
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-KEISNKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-CEECSSSSTTCTTCCEEECCSSC
T ss_pred             cccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCc
Confidence            56889999999999877642 123467889999999998853 32221  1234667777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=88.34  E-value=0.9  Score=43.31  Aligned_cols=156  Identities=12%  Similarity=0.149  Sum_probs=69.2

Q ss_pred             CCceEEEeeE--EEcchhHHHHhhcCCcccceeeccCCCCceeeEec-CCCCcceEEEeecCCccEEEE----eCCceeE
Q 014141          165 SLRSLTLCAV--NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVG-SSIPLKCLDIQFCYSIKEIEI----SAPNLLS  237 (430)
Q Consensus       165 ~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~-~~~~L~~L~l~~c~~l~~i~i----~~P~L~~  237 (430)
                      +|+.+.|..-  .+.+    ..+.+|++|+.+.+.+.. ++.+.-.+ .+.+|+.+.+.+  .+..|.-    .+++|+.
T Consensus       158 ~L~~i~lp~~l~~I~~----~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~  230 (401)
T 4fdw_A          158 TVQEIVFPSTLEQLKE----DIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKT  230 (401)
T ss_dssp             CCCEEECCTTCCEECS----STTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCC
T ss_pred             CceEEEeCCCccEehH----HHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCE
Confidence            5666666531  2222    235678888888876431 11111110 124555555431  1222221    2345555


Q ss_pred             EEEecceee---eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeee---cccccC----CCCccce
Q 014141          238 FKYIGQDIN---LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVF---AQFSQR----EFPKLMN  307 (430)
Q Consensus       238 L~~~~~~~~---~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~---~~~l~~----~~~~L~~  307 (430)
                      +.+.+....   ..+.+ ..|+.+.+.-  ....++.  .-+.+|++|+.+.+.... ..   ...++.    .+++|+.
T Consensus       231 l~l~~~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~--~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~aF~~c~~L~~  304 (401)
T 4fdw_A          231 IEIPENVSTIGQEAFRE-SGITTVKLPN--GVTNIAS--RAFYYCPELAEVTTYGST-FNDDPEAMIHPYCLEGCPKLAR  304 (401)
T ss_dssp             EECCTTCCEECTTTTTT-CCCSEEEEET--TCCEECT--TTTTTCTTCCEEEEESSC-CCCCTTCEECTTTTTTCTTCCE
T ss_pred             EecCCCccCcccccccc-CCccEEEeCC--CccEECh--hHhhCCCCCCEEEeCCcc-ccCCcccEECHHHhhCCccCCe
Confidence            555432111   11222 4566666531  1111100  345677788888776543 11   001222    1556666


Q ss_pred             EEEEEeecCccchhhHHHHHhhCCCceEEEE
Q 014141          308 LNISFTAANQETLLGLSFIMKACPFLEKLVL  338 (430)
Q Consensus       308 L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l  338 (430)
                      +.|.-.  - ....  ...+..|++|+.+.|
T Consensus       305 l~l~~~--i-~~I~--~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          305 FEIPES--I-RILG--QGLLGGNRKVTQLTI  330 (401)
T ss_dssp             ECCCTT--C-CEEC--TTTTTTCCSCCEEEE
T ss_pred             EEeCCc--e-EEEh--hhhhcCCCCccEEEE
Confidence            665210  0 0110  134567888888877

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=87.07  E-value=0.17  Score=42.00  Aligned_cols=57  Identities=16%  Similarity=0.057  Sum_probs=35.0

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeec
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFC  222 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c  222 (430)
                      ++|+.|+|.+..+..- ....+.++++|+.|.|.++. ++.+...  ..+++|+.|.+.+.
T Consensus        33 ~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence            7888888888876531 12345678888888888774 3322111  23456666666554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=85.59  E-value=0.26  Score=40.64  Aligned_cols=78  Identities=15%  Similarity=0.106  Sum_probs=35.3

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE---E-eCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE---I-SAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~---i-~~P~L~~  237 (430)
                      ++|+.|+|.+..++.-. ...+.++++|+.|.|.++. ++.+...  ..+++|+.|.+.+.. +..+.   + ..++|+.
T Consensus        30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCE
Confidence            55555555555443210 1123445556666655553 2221111  133555555555443 22221   1 2356777


Q ss_pred             EEEecce
Q 014141          238 FKYIGQD  244 (430)
Q Consensus       238 L~~~~~~  244 (430)
                      |.+.+..
T Consensus       107 L~L~~N~  113 (170)
T 3g39_A          107 IWLLNNP  113 (170)
T ss_dssp             EECCSSC
T ss_pred             EEeCCCC
Confidence            7766653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=84.18  E-value=0.35  Score=40.09  Aligned_cols=42  Identities=12%  Similarity=0.098  Sum_probs=32.3

Q ss_pred             CCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141          158 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  200 (430)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (430)
                      ..+.++++|+.|+|.+..++.- -..++..+++|+.|.|.++.
T Consensus        51 ~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           51 GVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             HHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence            3567899999999999877641 12245788999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=83.28  E-value=1.1  Score=41.29  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=50.3

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEEeCCceeEEEEe
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYI  241 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~  241 (430)
                      .+++.+.+.+. +...++..+...|++|+.|.|.++. ++.+.-.  ..|.+|+.+.+.+-  +..|.            
T Consensus       202 ~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n--i~~I~------------  265 (329)
T 3sb4_A          202 RDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN--LKTIG------------  265 (329)
T ss_dssp             GGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT--CCEEC------------
T ss_pred             cccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc--cceeh------------
Confidence            34444545443 2233455555568999999988753 3322211  13445555554321  22211            


Q ss_pred             cceeeeecCCCCCce-EEEEEeecCcchhhHHHHhhccCCCceEEEEecce
Q 014141          242 GQDINLHVGSLPQLV-DVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCN  291 (430)
Q Consensus       242 ~~~~~~~~~~~~~L~-~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~  291 (430)
                          ...+.++++|+ .+.+..  ....++.  .-+.+|++|+.+.+....
T Consensus       266 ----~~aF~~~~~L~~~l~l~~--~l~~I~~--~aF~~c~~L~~l~l~~n~  308 (329)
T 3sb4_A          266 ----QRVFSNCGRLAGTLELPA--SVTAIEF--GAFMGCDNLRYVLATGDK  308 (329)
T ss_dssp             ----TTTTTTCTTCCEEEEECT--TCCEECT--TTTTTCTTEEEEEECSSC
T ss_pred             ----HHHhhCChhccEEEEEcc--cceEEch--hhhhCCccCCEEEeCCCc
Confidence                11244555565 555542  1100110  445677788888775443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=82.68  E-value=0.38  Score=44.67  Aligned_cols=65  Identities=20%  Similarity=0.092  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCCceEEEee-EEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141          156 SGCGLSGIKSLRSLTLCA-VNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY  223 (430)
Q Consensus       156 ~p~~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~  223 (430)
                      +|. +..+++|+.|+|.+ ..+..- ....+.++++|+.|.|.++. ++.+...  ..+++|+.|.+.+..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc
Confidence            455 56777788888875 544321 11235677888888887774 3332211  245677777776654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=82.43  E-value=3.1  Score=39.50  Aligned_cols=167  Identities=11%  Similarity=0.032  Sum_probs=89.5

Q ss_pred             CCCCCCCCceEEEeeE---EEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEE---
Q 014141          159 GLSGIKSLRSLTLCAV---NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI---  230 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~---~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i---  230 (430)
                      .|.+|++|+.+.|.+.   .+.+..+.     |..|+.+.|...  ++.+.-.  ..|++|+.+.+..  ++..+.-   
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~-----~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF  245 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFV-----YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAF  245 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTT-----TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTT
T ss_pred             HhhCcccCCeeecCCCcceEechhhEe-----ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCcccccc
Confidence            5668899999999753   33333332     678888888632  3332222  1456677777643  1222221   


Q ss_pred             eCCceeEEEEeccee---eeecCCCCCceEEEEEeecCc-chhhHHH-HhhccCCCceEEEEeccee-eecccccCCCCc
Q 014141          231 SAPNLLSFKYIGQDI---NLHVGSLPQLVDVVFHVTPMV-QKMHCIG-SIVSYLPQLKTLELDGCNE-VFAQFSQREFPK  304 (430)
Q Consensus       231 ~~P~L~~L~~~~~~~---~~~~~~~~~L~~~~i~~~~~~-~~~~~~~-~l~~~~~~l~~L~l~~~~~-~~~~~l~~~~~~  304 (430)
                      ...+|+.+.+.....   ...+.++++|+.+.+.-.... .....+. ..+.+|++|+.+.+...-. +.. ..-..+.+
T Consensus       246 ~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~-~aF~~c~~  324 (401)
T 4fdw_A          246 RESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQ-GLLGGNRK  324 (401)
T ss_dssp             TTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECT-TTTTTCCS
T ss_pred             ccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhh-hhhcCCCC
Confidence            114677777754322   234567888888887632211 0000011 4567888999988864321 111 11112567


Q ss_pred             cceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          305 LMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       305 L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      |+.+.|.-.  . ....  ...+..| +|++|.+...
T Consensus       325 L~~l~lp~~--l-~~I~--~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          325 VTQLTIPAN--V-TQIN--FSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             CCEEEECTT--C-CEEC--TTSSSSS-CCCEEEECCS
T ss_pred             ccEEEECcc--c-cEEc--HHhCCCC-CCCEEEEcCC
Confidence            777777221  0 1110  1345678 9999988553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=81.23  E-value=1.2  Score=37.66  Aligned_cols=123  Identities=14%  Similarity=0.131  Sum_probs=78.4

Q ss_pred             HHHhhccCCCceEEEEecceeeeccc---cc---CCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccc
Q 014141          272 IGSIVSYLPQLKTLELDGCNEVFAQF---SQ---REFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGR  345 (430)
Q Consensus       272 ~~~l~~~~~~l~~L~l~~~~~~~~~~---l~---~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~  345 (430)
                      +..++.+-+.|+.|.|.....+....   +.   ..=..|++|+|..+.-++.....+...|+.-..|++|.|....   
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~---  109 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF---  109 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB---
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc---
Confidence            33666777888888886541122111   10   1145688888866555555566789999999999999995431   


Q ss_pred             ccccCccccc---cCcCCCccEEEEee----eecChhhHHHHHHHHhcccccccEEEecCC
Q 014141          346 RIGKKRHQIS---KHSHQHLKLVELQG----FNGREIDFELAFYVFENATMLEKMIIKPSG  399 (430)
Q Consensus       346 ~~~~~~~~~~---~~~~~~L~~v~i~~----~~g~~~e~~l~~~ll~~a~~Le~m~i~~~~  399 (430)
                       .++.|....   -.....|+.+.+.+    .-|......+++.+-.| +.|.++.+.+..
T Consensus       110 -Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N-~tL~~L~l~~~~  168 (197)
T 1pgv_A          110 -LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFAS  168 (197)
T ss_dssp             -CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCC
T ss_pred             -CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC-CCcCeEeccCCC
Confidence             233332111   12345699999974    33667777888877666 678888887554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=80.77  E-value=0.34  Score=43.39  Aligned_cols=38  Identities=21%  Similarity=0.301  Sum_probs=24.4

Q ss_pred             CCCCCceEEEeeEEEcc-hhHHHHhhcCCcccceeeccC
Q 014141          162 GIKSLRSLTLCAVNVTG-EVVEFFIHNCPLLENLRITQS  199 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~~  199 (430)
                      ++|+|++|+|++..+++ ..+..++..+|+|+.|.|.+.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N  206 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN  206 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence            45677777777776654 334455566777777777655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	430
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	7e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	4e-04

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 8/102 (7%)

Query: 21  DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTFTTSLDFDKKVKYMSFPPDYQQ 80
           D  +  P +I + I + L  ++   +  +S  W  +   +TSL     +      P    
Sbjct: 4   DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFN 63

Query: 81  SKYISWVNKVLELHRGSRINQFRICFRLDAKHKCNI-TNWVN 121
           S  +    K  +L +       +   RL       I  NW N
Sbjct: 64  SLNLKLSQKYPKLSQ-------QDRLRLSFLENIFILKNWYN 98

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 7e-05
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 21 DWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 56
          D+ S  P ++ ++++S L  K+  + +     W+ L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (82), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 23 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL 56
          +   PD++L+ I S L L E  + S +  RW  L
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	430
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.0
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.85
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.67
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.67
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.29
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.09
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.07
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.97
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.94
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.87
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.73
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.66
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.43
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.34
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.32
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.07
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	96.85
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.69
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.68
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.38
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.21
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.15
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	95.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.74
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	95.72
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.63
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.54
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	94.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	94.26
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	94.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.09
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	93.2
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	89.58
d2ifga3	156	High affinity nerve growth factor receptor, N-term	89.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	88.67
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	84.39

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.3e-11  Score=74.11  Aligned_cols=35  Identities=34%  Similarity=0.585  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhc
Q 014141           23 FSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLW   57 (430)
Q Consensus        23 is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw   57 (430)
                      ++.||+||+.+||++|+.+|+++++.|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5e-11  Score=108.08  Aligned_cols=81  Identities=14%  Similarity=0.129  Sum_probs=56.7

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCc-eeeEecCCCCcceEEEeecCCccEE-----EEeCCce
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLL-SLKVVGSSIPLKCLDIQFCYSIKEI-----EISAPNL  235 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~-~~~i~~~~~~L~~L~l~~c~~l~~i-----~i~~P~L  235 (430)
                      ...+|++|+|+++.++++.+..++..||+|++|.|.+|..-. .+..-+.+++|++|.+.+|..+...     .-.+|+|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            447899999999999888899999999999999999995321 1111234578999998888754321     1134566


Q ss_pred             eEEEEec
Q 014141          236 LSFKYIG  242 (430)
Q Consensus       236 ~~L~~~~  242 (430)
                      ++|++.+
T Consensus       124 ~~L~ls~  130 (284)
T d2astb2         124 DELNLSW  130 (284)
T ss_dssp             CEEECCC
T ss_pred             ccccccc
Confidence            6665544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=9.4e-11  Score=106.23  Aligned_cols=167  Identities=19%  Similarity=0.277  Sum_probs=103.7

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee---eEecCCCCcceEEEeecCCccE------EEEe
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL---KVVGSSIPLKCLDIQFCYSIKE------IEIS  231 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~---~i~~~~~~L~~L~l~~c~~l~~------i~i~  231 (430)
                      .++++|++|+|.++.+++..+.. +..||+|+.|.+.+|.++++.   .+...+++|++|.+.+|..+..      +.-.
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~  146 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  146 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccc
Confidence            46788999999988877666655 467889999999988877642   2234568899999988875432      1123


Q ss_pred             CCceeEEEEeccee-------eeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccccc--CCC
Q 014141          232 APNLLSFKYIGQDI-------NLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQ--REF  302 (430)
Q Consensus       232 ~P~L~~L~~~~~~~-------~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~--~~~  302 (430)
                      +|.|+.|.+.|+..       .....++|+|+++.+..+....  +.....+..+++|++|.+..+..+....+.  ..+
T Consensus       147 ~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it--d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~  224 (284)
T d2astb2         147 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  224 (284)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccCCC--chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC
Confidence            57888888776421       1122356777777775333221  112233456778888888765433332221  226


Q ss_pred             CccceEEEEEeecCccchhhHHHHHhhCCCce
Q 014141          303 PKLMNLNISFTAANQETLLGLSFIMKACPFLE  334 (430)
Q Consensus       303 ~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~  334 (430)
                      ++|++|++..+    .....+..+.+.+|+|+
T Consensus       225 ~~L~~L~l~~~----~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         225 PTLKTLQVFGI----VPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             TTCCEEECTTS----SCTTCHHHHHHHSTTSE
T ss_pred             CCCCEEeeeCC----CCHHHHHHHHHhCcccc
Confidence            77787776332    23334667777788875

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.67  E-value=1.5e-09  Score=81.42  Aligned_cols=40  Identities=18%  Similarity=0.346  Sum_probs=36.6

Q ss_pred             cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhhccc
Q 014141           20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYLWTF   59 (430)
Q Consensus        20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~lw~~   59 (430)
                      .|.|+.||+||+.+||++|+.+|++++++|||+|+++...
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5889999999999999999999999999999999976443

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.5e-09  Score=79.18  Aligned_cols=37  Identities=22%  Similarity=0.464  Sum_probs=35.6

Q ss_pred             cccCCCCCHHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 014141           20 EDWFSRFPDDILIHIISGLTLKEAARTSVLSSRWKYL   56 (430)
Q Consensus        20 ~d~is~LPdeiL~~Ils~L~~~d~~rts~vSrrWr~l   56 (430)
                      .|.|+.||+||+.+||++|+.+|+++++.|||+|+.+
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l   52 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999985

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=9.3e-08  Score=73.72  Aligned_cols=37  Identities=24%  Similarity=0.484  Sum_probs=34.5

Q ss_pred             cccCCCCC----HHHHHHHHhcCChHHHHHHHHhhhhhhhh
Q 014141           20 EDWFSRFP----DDILIHIISGLTLKEAARTSVLSSRWKYL   56 (430)
Q Consensus        20 ~d~is~LP----deiL~~Ils~L~~~d~~rts~vSrrWr~l   56 (430)
                      .|.|+.||    |||+.+|||||+.+|+++++.|||+|+++
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58899999    59999999999999999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.09  E-value=9e-07  Score=76.42  Aligned_cols=60  Identities=17%  Similarity=0.222  Sum_probs=39.7

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  223 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~  223 (430)
                      +.++++|++|+|++..+.+-.  . +..++.|+.|.+.++.. +.+.--..+++|+.+.+.++.
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~--~-l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l~~~~  118 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLA--P-LKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQ  118 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSC
T ss_pred             HhcCCCCcEeecCCceeeccc--c-ccccccccccccccccc-ccccccccccccccccccccc
Confidence            457888888888887765421  1 67788888888887743 333222345677777776655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.07  E-value=4.9e-07  Score=77.22  Aligned_cols=59  Identities=17%  Similarity=0.149  Sum_probs=29.7

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeec
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFC  222 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c  222 (430)
                      +..|++|++|+|++..+++-  .. ++.+++|+.|.+.++. ++.+.--..+++|+.|.+.++
T Consensus        64 l~~l~~L~~L~L~~n~i~~l--~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTS
T ss_pred             HhhCCCCCEEeCCCccccCc--cc-cccCcccccccccccc-ccccccccccccccccccccc
Confidence            34566666666666655431  11 3456666666666653 222221122345555555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.97  E-value=2.2e-06  Score=72.27  Aligned_cols=37  Identities=11%  Similarity=0.175  Sum_probs=20.4

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  200 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (430)
                      ..|++|++|+|++..+++-.  . +.++|+|+.|.+.++.
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC
T ss_pred             ccCCCcCcCccccccccCcc--c-ccCCcccccccccccc
Confidence            45566666666666554311  1 4556666666666553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=2.4e-06  Score=72.10  Aligned_cols=158  Identities=15%  Similarity=0.203  Sum_probs=99.2

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeEEE
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLSFK  239 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~L~  239 (430)
                      .+++|++|.+.++.+++  +.. ++.+++|+.|.+.++. ++.+..-..+++|+.|.+.++. ...+. + ..+.|+.|.
T Consensus        38 ~l~~l~~L~l~~~~i~~--l~~-l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--IDG-VEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQ-IADITPLANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCC--ccc-cccCCCcCcCcccccc-ccCcccccCCcccccccccccc-ccccccccccccccccc
Confidence            45778888888776654  221 5678999999998874 4433323456788888888765 22221 2 457888888


Q ss_pred             Eecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCc
Q 014141          240 YIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQ  317 (430)
Q Consensus       240 ~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  317 (430)
                      +.+....  ..+..+++|+.+.+..+.... .    .-+..+++++.|.+..+. +.....-..+++|++|+++...-  
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~----~~l~~~~~L~~L~l~~n~-l~~l~~l~~l~~L~~L~ls~N~i--  184 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNTISD-I----SALSGLTSLQQLNFSSNQ-VTDLKPLANLTTLERLDISSNKV--  184 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCCC-C----GGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSCC--
T ss_pred             ccccccccccccchhhhhHHhhhhhhhhcc-c----cccccccccccccccccc-ccCCccccCCCCCCEEECCCCCC--
Confidence            8766432  235567888888877443221 1    235678889999887765 43322123478888888855421  


Q ss_pred             cchhhHHHHHhhCCCceEE
Q 014141          318 ETLLGLSFIMKACPFLEKL  336 (430)
Q Consensus       318 ~~~~~l~~lL~~~p~L~~L  336 (430)
                      .+   + ..+..+++||+|
T Consensus       185 ~~---i-~~l~~L~~L~~L  199 (199)
T d2omxa2         185 SD---I-SVLAKLTNLESL  199 (199)
T ss_dssp             CC---C-GGGGGCTTCSEE
T ss_pred             CC---C-ccccCCCCCCcC
Confidence            12   2 235788888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.87  E-value=4.2e-06  Score=71.14  Aligned_cols=162  Identities=19%  Similarity=0.216  Sum_probs=101.0

Q ss_pred             CCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-E-eCCceeEEE
Q 014141          162 GIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-I-SAPNLLSFK  239 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i-~~P~L~~L~  239 (430)
                      .+.+|+.|.+.++.+++-  .. +..+|+|++|.|.++. ++.+.....+++|+.|.+.++. +..+. + ..|+|+.|.
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~~-l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCc--hh-HhhCCCCCEEeCCCcc-ccCccccccCcccccccccccc-ccccccccccccccccc
Confidence            356788888887766541  11 5678899999998874 3333323456788888888765 44332 1 357888888


Q ss_pred             Eecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCc
Q 014141          240 YIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQ  317 (430)
Q Consensus       240 ~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  317 (430)
                      +.+....  -.+..++.++.+.+........     .....+++|+.+.+..+. +....--..+++|++|+++...   
T Consensus       119 l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~-----~~~~~l~~L~~l~l~~n~-l~~i~~l~~l~~L~~L~Ls~N~---  189 (210)
T d1h6ta2         119 LEHNGISDINGLVHLPQLESLYLGNNKITDI-----TVLSRLTKLDTLSLEDNQ-ISDIVPLAGLTKLQNLYLSKNH---  189 (210)
T ss_dssp             CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGGGCTTCSEEECCSSC-CCCCGGGTTCTTCCEEECCSSC---
T ss_pred             ccccccccccccccccccccccccccccccc-----cccccccccccccccccc-ccccccccCCCCCCEEECCCCC---
Confidence            8766432  1344567777777664432211     334678889999987776 4322112237888888885432   


Q ss_pred             cchhhHHHHHhhCCCceEEEEEE
Q 014141          318 ETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       318 ~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                        ...+. -+..+++|+.|+|..
T Consensus       190 --i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 --ISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --CCBCG-GGTTCTTCSEEEEEE
T ss_pred             --CCCCh-hhcCCCCCCEEEccC
Confidence              11222 367889999999864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.1e-06  Score=68.86  Aligned_cols=79  Identities=15%  Similarity=0.110  Sum_probs=50.6

Q ss_pred             CCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEE----eCCcee
Q 014141          161 SGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLL  236 (430)
Q Consensus       161 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i----~~P~L~  236 (430)
                      .++.+|++|+|++..++.  ++.+...++.|+.|.|.++. ++.+.--..+++|+.|.+.++. +..+.-    ..|+|+
T Consensus        15 ~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCC-CCccCCcccCcchhhhhccccc-ccCCCccccccccccc
Confidence            456788889998887754  33445678889999998874 4443322355778888887776 444321    245666


Q ss_pred             EEEEecc
Q 014141          237 SFKYIGQ  243 (430)
Q Consensus       237 ~L~~~~~  243 (430)
                      .|.+.+.
T Consensus        91 ~L~L~~N   97 (162)
T d1a9na_          91 ELILTNN   97 (162)
T ss_dssp             EEECCSC
T ss_pred             cceeccc
Confidence            6655554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.73  E-value=6.2e-06  Score=75.68  Aligned_cols=143  Identities=15%  Similarity=0.065  Sum_probs=85.4

Q ss_pred             CCCCceEEEEEeecCc-chhhHHHHhhccCCCceEEEEecceeeecc-------cccCCCCccceEEEEEeecCccchhh
Q 014141          251 SLPQLVDVVFHVTPMV-QKMHCIGSIVSYLPQLKTLELDGCNEVFAQ-------FSQREFPKLMNLNISFTAANQETLLG  322 (430)
Q Consensus       251 ~~~~L~~~~i~~~~~~-~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~-------~l~~~~~~L~~L~l~~~~~~~~~~~~  322 (430)
                      ..+.|+.+.++.+... .....+...+..+++++.|.+..+. +...       .....+++|++|+++...-+......
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~  234 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA  234 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccccccccccc
Confidence            4455666665543322 1223344666778899999997765 3321       11223788999988554222223445


Q ss_pred             HHHHHhhCCCceEEEEEEeccccccccCcccc-----ccCcCCCccEEEEeeeecC-hhhHHHHHHHHhcccccccEEEe
Q 014141          323 LSFIMKACPFLEKLVLQIWNNGRRIGKKRHQI-----SKHSHQHLKLVELQGFNGR-EIDFELAFYVFENATMLEKMIIK  396 (430)
Q Consensus       323 l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~-----~~~~~~~L~~v~i~~~~g~-~~e~~l~~~ll~~a~~Le~m~i~  396 (430)
                      +...+..+|+|++|.+..+.    ..+.+...     ..+....|+.+.+.+-.-+ +.-..+++.+..+.+.|+++.+.
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~----i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~  310 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCL----LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN  310 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCC----CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             ccccccccccchhhhhhcCc----cCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECC
Confidence            77889999999999884431    12211111     1345678999999874422 33344666555688999999875


Q ss_pred             cC
Q 014141          397 PS  398 (430)
Q Consensus       397 ~~  398 (430)
                      ..
T Consensus       311 ~N  312 (344)
T d2ca6a1         311 GN  312 (344)
T ss_dssp             TS
T ss_pred             CC
Confidence            43

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=6.1e-06  Score=72.86  Aligned_cols=189  Identities=18%  Similarity=0.115  Sum_probs=98.0

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecc
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQ  243 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~  243 (430)
                      ++|++|+|.+..++.-. ...+.++++|++|.|.++. ++.+...+.+++|+.|.+.++. +..+.              
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~-l~~~~--------------   93 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLP--------------   93 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCC--------------
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhcccccccccccccc-cccccccccccccccccccccc-ccccc--------------
Confidence            67999999988665311 1235789999999999984 5555544566788888887664 22110              


Q ss_pred             eeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCccceEEEEEeecCccchh
Q 014141          244 DINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMNLNISFTAANQETLL  321 (430)
Q Consensus       244 ~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L~~L~l~~~~~~~~~~~  321 (430)
                         ..+.++++|+.+.+..........   .....+.+++.|.+.... +...  .....+++|+.|++....-...   
T Consensus        94 ---~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~---  163 (266)
T d1p9ag_          94 ---LLGQTLPALTVLDVSFNRLTSLPL---GALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTEL---  163 (266)
T ss_dssp             ---CCTTTCTTCCEEECCSSCCCCCCS---STTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCC---
T ss_pred             ---cccccccccccccccccccceeec---cccccccccccccccccc-cceeccccccccccchhccccccccccc---
Confidence               112233444444443222111000   223455566666665544 2110  1111245566665533211111   


Q ss_pred             hHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEee--eecChhhHHHHHHHHhcc
Q 014141          322 GLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG--FNGREIDFELAFYVFENA  387 (430)
Q Consensus       322 ~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~--~~g~~~e~~l~~~ll~~a  387 (430)
                       -...+...++|++|++....-    .   ..+. .+..++|+.+.+.|  +..+.+-..|.+++-.+.
T Consensus       164 -~~~~~~~l~~L~~L~Ls~N~L----~---~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~~  224 (266)
T d1p9ag_         164 -PAGLLNGLENLDTLLLQENSL----Y---TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA  224 (266)
T ss_dssp             -CTTTTTTCTTCCEEECCSSCC----C---CCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             -CccccccccccceeecccCCC----c---ccChhHCCCCCCCEEEecCCCCCCCcchHHHHHHHHhcc
Confidence             113456677888887744211    1   1111 23456788888776  444544455666555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.43  E-value=2.1e-05  Score=72.80  Aligned_cols=188  Identities=16%  Similarity=0.116  Sum_probs=116.4

Q ss_pred             CCCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCce
Q 014141          158 CGLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNL  235 (430)
Q Consensus       158 ~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L  235 (430)
                      .....+++++.|.+.+..+++-.   -...+++|+.|.+.++. ++.+..-..+++|+.|.+.++. +..+.  -..|+|
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L  265 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKL  265 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCCCGGGTTCTTC
T ss_pred             cccccccccceeeccCCccCCCC---cccccCCCCEEECCCCC-CCCcchhhcccccchhccccCc-cCCCCcccccccC
Confidence            34457789999999888665421   13568999999999884 3333222355889999988775 33221  135789


Q ss_pred             eEEEEecceee--eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEe
Q 014141          236 LSFKYIGQDIN--LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFT  313 (430)
Q Consensus       236 ~~L~~~~~~~~--~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~  313 (430)
                      ++|.+.+....  ..+...+.+..+.+........     .-+..+++++.|.+..+. +........+++|++|++..+
T Consensus       266 ~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~-----~~~~~~~~l~~L~ls~n~-l~~l~~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         266 TELKLGANQISNISPLAGLTALTNLELNENQLEDI-----SPISNLKNLTYLTLYFNN-ISDISPVSSLTKLQRLFFANN  339 (384)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC-----GGGGGCTTCSEEECCSSC-CSCCGGGGGCTTCCEEECCSS
T ss_pred             CEeeccCcccCCCCccccccccccccccccccccc-----cccchhcccCeEECCCCC-CCCCcccccCCCCCEEECCCC
Confidence            99988766442  1344566677666554332211     235778889999998776 433221234889999998553


Q ss_pred             ecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccccCcCCCccEEEEee
Q 014141          314 AANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQISKHSHQHLKLVELQG  369 (430)
Q Consensus       314 ~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~  369 (430)
                      .-     ..+. -+..+|+|+.|++....-    .+   .+.-..+++|+.+.+.+
T Consensus       340 ~l-----~~l~-~l~~l~~L~~L~l~~N~l----~~---l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         340 KV-----SDVS-SLANLTNINWLSAGHNQI----SD---LTPLANLTRITQLGLND  382 (384)
T ss_dssp             CC-----CCCG-GGGGCTTCCEEECCSSCC----CB---CGGGTTCTTCSEEECCC
T ss_pred             CC-----CCCh-hHcCCCCCCEEECCCCcC----CC---ChhhccCCCCCEeeCCC
Confidence            21     1122 367899999999955321    11   11123457898888753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.34  E-value=5.4e-05  Score=69.86  Aligned_cols=186  Identities=16%  Similarity=0.176  Sum_probs=111.7

Q ss_pred             HhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE--EeCCceeEEEEecceee--eecCCCCCceEEE
Q 014141          184 FIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE--ISAPNLLSFKYIGQDIN--LHVGSLPQLVDVV  259 (430)
Q Consensus       184 ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~--i~~P~L~~L~~~~~~~~--~~~~~~~~L~~~~  259 (430)
                      ....++.++.|.+.++.. +.+.....+++|+.|.+.++. +..+.  -..++|+.+.+.+....  ..+..+++|+.+.
T Consensus       192 ~~~~l~~~~~l~l~~n~i-~~~~~~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         192 VLAKLTNLESLIATNNQI-SDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK  269 (384)
T ss_dssp             GGGGCTTCSEEECCSSCC-CCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             ccccccccceeeccCCcc-CCCCcccccCCCCEEECCCCC-CCCcchhhcccccchhccccCccCCCCcccccccCCEee
Confidence            356789999999887742 222222344789999988775 33332  14578888888876442  2356788899888


Q ss_pred             EEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEE
Q 014141          260 FHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQ  339 (430)
Q Consensus       260 i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~  339 (430)
                      ++.......     .-+..++.++.+.+..+. +........++++++|+++...-.  +   +. -+..+|+|++|++.
T Consensus       270 l~~~~l~~~-----~~~~~~~~l~~l~~~~n~-l~~~~~~~~~~~l~~L~ls~n~l~--~---l~-~l~~l~~L~~L~L~  337 (384)
T d2omza2         270 LGANQISNI-----SPLAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNNIS--D---IS-PVSSLTKLQRLFFA  337 (384)
T ss_dssp             CCSSCCCCC-----GGGTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCS--C---CG-GGGGCTTCCEEECC
T ss_pred             ccCcccCCC-----Cccccccccccccccccc-cccccccchhcccCeEECCCCCCC--C---Cc-ccccCCCCCEEECC
Confidence            875443211     124567778888876655 332222333788888888554221  1   21 26789999999995


Q ss_pred             EeccccccccCccccccCcCCCccEEEEeeeecChhhHHHHHHHHhcccccccEEEe
Q 014141          340 IWNNGRRIGKKRHQISKHSHQHLKLVELQGFNGREIDFELAFYVFENATMLEKMIIK  396 (430)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~L~~v~i~~~~g~~~e~~l~~~ll~~a~~Le~m~i~  396 (430)
                      ...    ....   +.-..+++|+.+.+.+-+=..  +  ..  +.+.+.|+.+.|.
T Consensus       338 ~n~----l~~l---~~l~~l~~L~~L~l~~N~l~~--l--~~--l~~l~~L~~L~L~  381 (384)
T d2omza2         338 NNK----VSDV---SSLANLTNINWLSAGHNQISD--L--TP--LANLTRITQLGLN  381 (384)
T ss_dssp             SSC----CCCC---GGGGGCTTCCEEECCSSCCCB--C--GG--GTTCTTCSEEECC
T ss_pred             CCC----CCCC---hhHcCCCCCCEEECCCCcCCC--C--hh--hccCCCCCEeeCC
Confidence            531    1111   111235789999887632111  1  01  4678888888764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.32  E-value=0.0001  Score=62.86  Aligned_cols=144  Identities=15%  Similarity=0.155  Sum_probs=78.0

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE-EeCCceeEE
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE-ISAPNLLSF  238 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~-i~~P~L~~L  238 (430)
                      +..+++|+.|.+.++.+++  +.. +..++.|+.|.+.+|.......+ ...+.++.+.+.++....... ...++|+.|
T Consensus        81 l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L  156 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLDLTSTQITDVTPL-AGLSNLQVLYLDLNQITNISPLAGLTNLQYL  156 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEECTTSCCCCCGGG-TTCTTCCEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccc--ccc-ccccccccccccccccccccchh-ccccchhhhhchhhhhchhhhhccccccccc
Confidence            4688999999999887653  222 56899999999998864332111 223566666665554111111 134455555


Q ss_pred             EEecceeeeecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCcc
Q 014141          239 KYIGQDINLHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQE  318 (430)
Q Consensus       239 ~~~~~~~~~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  318 (430)
                      .+.+....                    ..     .-+.++++|+.|++.++. +.....-..+++|++|+++.+.    
T Consensus       157 ~l~~n~~~--------------------~~-----~~l~~l~~L~~L~Ls~n~-l~~l~~l~~l~~L~~L~Ls~N~----  206 (227)
T d1h6ua2         157 SIGNAQVS--------------------DL-----TPLANLSKLTTLKADDNK-ISDISPLASLPNLIEVHLKNNQ----  206 (227)
T ss_dssp             ECCSSCCC--------------------CC-----GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECTTSC----
T ss_pred             cccccccc--------------------cc-----hhhcccccceecccCCCc-cCCChhhcCCCCCCEEECcCCc----
Confidence            55443221                    00     113455666666665554 3221111236667777664321    


Q ss_pred             chhhHHHHHhhCCCceEEEEE
Q 014141          319 TLLGLSFIMKACPFLEKLVLQ  339 (430)
Q Consensus       319 ~~~~l~~lL~~~p~L~~L~l~  339 (430)
                       ...+. -++++++|+.|+|.
T Consensus       207 -lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         207 -ISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             -CCBCG-GGTTCTTCCEEEEE
T ss_pred             -CCCCc-ccccCCCCCEEEee
Confidence             11111 25677777777774

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=5.5e-05  Score=71.35  Aligned_cols=80  Identities=16%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             CCCCCceEEEeeEEEcchhH---HHHhhcCCcccceeeccCCCCcee---eE----ecCCCCcceEEEeecCCccEE---
Q 014141          162 GIKSLRSLTLCAVNVTGEVV---EFFIHNCPLLENLRITQSPDLLSL---KV----VGSSIPLKCLDIQFCYSIKEI---  228 (430)
Q Consensus       162 ~~~~L~~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~~~~~~~~---~i----~~~~~~L~~L~l~~c~~l~~i---  228 (430)
                      .+++|++|.|.+|.+++..+   ...+..||+|++|+|.++. +++.   .+    .....+|+.|.+.+|. +...   
T Consensus        25 ~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~  102 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG  102 (460)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccc
Confidence            56999999999999987654   4557899999999999874 3211   11    1123579999999886 3221   


Q ss_pred             -----EEeCCceeEEEEecc
Q 014141          229 -----EISAPNLLSFKYIGQ  243 (430)
Q Consensus       229 -----~i~~P~L~~L~~~~~  243 (430)
                           -...++|++|.+.+.
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSS
T ss_pred             cccchhhccccccccccccc
Confidence                 113578999988764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00026  Score=61.91  Aligned_cols=161  Identities=14%  Similarity=0.115  Sum_probs=91.4

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecCCccEEE----EeCCc
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCYSIKEIE----ISAPN  234 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~~l~~i~----i~~P~  234 (430)
                      .+.++++|++|+|.+..++.  +.. .+..|.|+.|.|.++..-........+++|+.|.+.++.. ..+.    ...++
T Consensus        50 ~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~  125 (266)
T d1p9ag_          50 TLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGE  125 (266)
T ss_dssp             GGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTT
T ss_pred             Hhhccccccccccccccccc--ccc-cccccccccccccccccccccccccccccccccccccccc-ceeeccccccccc
Confidence            34678999999999886653  111 3578999999999875332222334557888888877652 2221    12356


Q ss_pred             eeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCccce
Q 014141          235 LLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKLMN  307 (430)
Q Consensus       235 L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L~~  307 (430)
                      ++.|.+.+....    ..+..++.++.+.+..+.....   ....+..+++|+.|+|+.+. +.  .+|..   .++|+.
T Consensus       126 l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~---~~~~~~~l~~L~~L~Ls~N~-L~--~lp~~~~~~~~L~~  199 (266)
T d1p9ag_         126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL---PAGLLNGLENLDTLLLQENS-LY--TIPKGFFGSHLLPF  199 (266)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC---CTTTTTTCTTCCEEECCSSC-CC--CCCTTTTTTCCCSE
T ss_pred             cccccccccccceeccccccccccchhccccccccccc---CccccccccccceeecccCC-Cc--ccChhHCCCCCCCE
Confidence            777777665332    1233456666666654322210   01345667778888877665 33  23333   456666


Q ss_pred             EEEEEee-cCccchhhHHHHHhh
Q 014141          308 LNISFTA-ANQETLLGLSFIMKA  329 (430)
Q Consensus       308 L~l~~~~-~~~~~~~~l~~lL~~  329 (430)
                      |.|...- ..+....++..+++.
T Consensus       200 L~L~~Np~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         200 AFLHGNPWLCNCEILYFRRWLQD  222 (266)
T ss_dssp             EECCSCCBCCSGGGHHHHHHHHH
T ss_pred             EEecCCCCCCCcchHHHHHHHHh
Confidence            6664321 112344455555553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.79  E-value=6.3e-05  Score=68.70  Aligned_cols=114  Identities=18%  Similarity=0.138  Sum_probs=57.1

Q ss_pred             CCCCceEEEEEeecCcch-hhH-HHHhhccCCCceEEEEecceeeeccc---c---cCCCCccceEEEEEeecCccchhh
Q 014141          251 SLPQLVDVVFHVTPMVQK-MHC-IGSIVSYLPQLKTLELDGCNEVFAQF---S---QREFPKLMNLNISFTAANQETLLG  322 (430)
Q Consensus       251 ~~~~L~~~~i~~~~~~~~-~~~-~~~l~~~~~~l~~L~l~~~~~~~~~~---l---~~~~~~L~~L~l~~~~~~~~~~~~  322 (430)
                      ..+.|+.+.+..+..... ... +...+..+++|+.|++..+. +....   +   ...+++|++|+|+.+.-+......
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            345666666654432211 111 22456677778888876655 32211   1   122677777777554323233444


Q ss_pred             HHHHHhhC--CCceEEEEEEeccccccccCccc--cc--cCcCCCccEEEEee
Q 014141          323 LSFIMKAC--PFLEKLVLQIWNNGRRIGKKRHQ--IS--KHSHQHLKLVELQG  369 (430)
Q Consensus       323 l~~lL~~~--p~L~~L~l~~~~~~~~~~~~~~~--~~--~~~~~~L~~v~i~~  369 (430)
                      +...+..+  +.|++|+|....    ..+.+..  ..  ....++|+.+.+.|
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N~----i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYNE----IELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSC----CBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             HHHHhhhccCCCCCEEECCCCc----CChHHHHHHHHHHHccCCCCCEEECCC
Confidence            55666554  467777775421    1111111  11  11345688887765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.69  E-value=0.00084  Score=59.66  Aligned_cols=41  Identities=17%  Similarity=0.185  Sum_probs=27.1

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  200 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (430)
                      .+.++++|++|.+.++.+..- ....+.+++.|+.|.+.++.
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC
T ss_pred             Hhhcccccccccccccccccc-chhhhhCCCccCEecccCCc
Confidence            456778888888887765431 12235677888888887763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00059  Score=54.74  Aligned_cols=128  Identities=13%  Similarity=0.115  Sum_probs=69.6

Q ss_pred             hcCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeec
Q 014141          186 HNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP  264 (430)
Q Consensus       186 ~~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~  264 (430)
                      ..+..|++|+|.++. ++.+ .+...+++|+.|.++++. +..+.-                  +..+++|+.+.+..+.
T Consensus        15 ~n~~~lr~L~L~~n~-I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~~------------------~~~l~~L~~L~ls~N~   74 (162)
T d1a9na_          15 TNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNE-IRKLDG------------------FPLLRRLKTLLVNNNR   74 (162)
T ss_dssp             ECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEECCSSC-CCEECC------------------CCCCSSCCEEECCSSC
T ss_pred             cCcCcCcEEECCCCC-CCccCccccccccCCEEECCCCC-CCccCC------------------cccCcchhhhhccccc
Confidence            357789999999885 3332 222345778888887765 443321                  2234444444444332


Q ss_pred             CcchhhHHHHhhccCCCceEEEEecceeeecc-c--ccCCCCccceEEEEEeecCccchhh-HHHHHhhCCCceEEEEE
Q 014141          265 MVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ-F--SQREFPKLMNLNISFTAANQETLLG-LSFIMKACPFLEKLVLQ  339 (430)
Q Consensus       265 ~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~-~--l~~~~~~L~~L~l~~~~~~~~~~~~-l~~lL~~~p~L~~L~l~  339 (430)
                      ......   .++..+++++.|.+..+. +... .  ....+++|++|++......  .... -..++..+|+|+.|+-.
T Consensus        75 i~~l~~---~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i~--~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          75 ICRIGE---GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCEECS---CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccCCCc---cccccccccccceecccc-ccccccccccccccccchhhcCCCccc--cccchHHHHHHHCCCcCeeCCC
Confidence            211000   234567778888877665 3321 1  1123777888877543211  1111 23467889999988643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=58.13  Aligned_cols=196  Identities=12%  Similarity=0.052  Sum_probs=84.2

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEEE----eCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIEI----SAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~i----~~P~L~~  237 (430)
                      +++++|+|++..++.-. ...+.+++.|+.|.+.+... ..+...  ..+..++.+.+.....+..+.-    ..++|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~ls~n~l-~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCEEECcCCcCCCCC-HHHhhccccccccccccccc-cccccccccccccccccccccccccccccchhhcccccCCE
Confidence            34566666555443200 11244556666666654421 111111  1123444444433332222211    2355666


Q ss_pred             EEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecc--cccCCCCccceEEEE
Q 014141          238 FKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQ--FSQREFPKLMNLNIS  311 (430)
Q Consensus       238 L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~--~l~~~~~~L~~L~l~  311 (430)
                      |.+.+....    ..+...+.|+.+.+..+.......   ..+..+++++.|++..+. +...  .....+++|+.|.+.
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~---~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD---DTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             EecCCcccccccccccchhcccchhhhccccccccCh---hHhccccchhhcccccCc-ccccchhhhccccccchhhhh
Confidence            655544321    122334555555555332211000   334566777777776654 3211  111124555555553


Q ss_pred             EeecCccchhhHHHHHhhCCCceEEEEEEeccccccccCccccc-cCcCCCccEEEEee--eecChh
Q 014141          312 FTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRIGKKRHQIS-KHSHQHLKLVELQG--FNGREI  375 (430)
Q Consensus       312 ~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~v~i~~--~~g~~~  375 (430)
                      ...-.  ..  ....+..+++|+.|++....-    .  +..+. -..+.+|+.+.+.|  +.++.+
T Consensus       186 ~N~l~--~i--~~~~f~~l~~L~~L~l~~N~i----~--~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         186 QNRVA--HV--HPHAFRDLGRLMTLYLFANNL----S--ALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             SSCCC--EE--CTTTTTTCTTCCEEECCSSCC----S--CCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             hcccc--cc--ChhHhhhhhhccccccccccc----c--cccccccccccccCEEEecCCCCCCCcc
Confidence            32111  11  124456777788777743211    0  01011 12346677777766  445443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0019  Score=56.64  Aligned_cols=172  Identities=16%  Similarity=0.109  Sum_probs=109.2

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE----EeC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE----ISA  232 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~----i~~  232 (430)
                      .+.++++|++|++++..+..-. ......++.++.+.......+..+...  ..+++|+.|.+.++.. ..+.    ...
T Consensus        51 ~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~  128 (284)
T d1ozna_          51 SFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGL  128 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTC
T ss_pred             Hhhccccccccccccccccccc-cccccccccccccccccccccccccchhhcccccCCEEecCCccc-ccccccccchh
Confidence            4678899999999887664321 123456888888887766555544222  2457899999987762 2221    235


Q ss_pred             CceeEEEEecceee----eecCCCCCceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeecccccCC---CCcc
Q 014141          233 PNLLSFKYIGQDIN----LHVGSLPQLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQFSQRE---FPKL  305 (430)
Q Consensus       233 P~L~~L~~~~~~~~----~~~~~~~~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~l~~~---~~~L  305 (430)
                      ++|+.+.+.+..+.    -.+...+.|+.+.+..+.......   ..+.++++|+.+.+..+. +.. ..|..   +++|
T Consensus       129 ~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~---~~f~~l~~L~~l~l~~N~-l~~-i~~~~f~~l~~L  203 (284)
T d1ozna_         129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE---RAFRGLHSLDRLLLHQNR-VAH-VHPHAFRDLGRL  203 (284)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT---TTTTTCTTCCEEECCSSC-CCE-ECTTTTTTCTTC
T ss_pred             cccchhhhccccccccChhHhccccchhhcccccCcccccch---hhhccccccchhhhhhcc-ccc-cChhHhhhhhhc
Confidence            67888888876443    124567788888877543321111   445788999999998766 321 22322   6778


Q ss_pred             ceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEe
Q 014141          306 MNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIW  341 (430)
Q Consensus       306 ~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~  341 (430)
                      ++|+++...-.  .  .....+..+++|+.|.+...
T Consensus       204 ~~L~l~~N~i~--~--~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         204 MTLYLFANNLS--A--LPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CEEECCSSCCS--C--CCHHHHTTCTTCCEEECCSS
T ss_pred             ccccccccccc--c--ccccccccccccCEEEecCC
Confidence            88887543221  1  12457789999999998654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.15  E-value=0.00041  Score=52.99  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=28.3

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  200 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (430)
                      .+.++++|++|+|++..++.  +..-++.+++|+.|.+.++.
T Consensus        15 ~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~   54 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA   54 (124)
T ss_dssp             CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC
T ss_pred             ccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc
Confidence            35677888888888877653  32235678888888888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.006  Score=51.76  Aligned_cols=169  Identities=15%  Similarity=0.093  Sum_probs=90.5

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEEE----EeCCceeE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEIE----ISAPNLLS  237 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i~----i~~P~L~~  237 (430)
                      +++++|+|.+..++.-. ...+.++++|++|.+.++.....+...  ..++.++.+.+..+..+..+.    -..|+|+.
T Consensus        29 ~~l~~L~Ls~n~i~~l~-~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEEC-TTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccC-hhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            68999999987664210 123578999999999988654443221  245788898888776655543    34689999


Q ss_pred             EEEecceeee--ecCCCCCceEEEEEeecCcchhhHHH-HhhccC-CCceEEEEecceeeecccccCC-CCccceEEEEE
Q 014141          238 FKYIGQDINL--HVGSLPQLVDVVFHVTPMVQKMHCIG-SIVSYL-PQLKTLELDGCNEVFAQFSQRE-FPKLMNLNISF  312 (430)
Q Consensus       238 L~~~~~~~~~--~~~~~~~L~~~~i~~~~~~~~~~~~~-~l~~~~-~~l~~L~l~~~~~~~~~~l~~~-~~~L~~L~l~~  312 (430)
                      +.+.+.....  .......+..+......... ...+. ..+.++ ..+..|.+.... +.  .++.. |...+-+.+..
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~~~~~~~l~~L~l~~n~-l~--~i~~~~~~~~~l~~~~~  183 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNG-IQ--EIHNCAFNGTQLDELNL  183 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSSC-CC--EECTTTTTTCCEEEEEC
T ss_pred             cccchhhhcccccccccccccccccccccccc-cccccccccccccccceeeeccccc-cc--ccccccccchhhhcccc
Confidence            9998764421  12234445555443322110 01110 112222 366667765544 22  12222 33222222322


Q ss_pred             eecCccchhhH-HHHHhhCCCceEEEEE
Q 014141          313 TAANQETLLGL-SFIMKACPFLEKLVLQ  339 (430)
Q Consensus       313 ~~~~~~~~~~l-~~lL~~~p~L~~L~l~  339 (430)
                      ...  .....+ ...+..+|+|+.|+|.
T Consensus       184 l~~--n~l~~l~~~~f~~l~~L~~L~Ls  209 (242)
T d1xwdc1         184 SDN--NNLEELPNDVFHGASGPVILDIS  209 (242)
T ss_dssp             TTC--TTCCCCCTTTTTTSCCCSEEECT
T ss_pred             ccc--cccccccHHHhcCCCCCCEEECC
Confidence            111  112122 2346788999999883

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=95.94  E-value=3.4e-05  Score=64.70  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=36.5

Q ss_pred             CCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceee-EecCCCCcceEEEeec
Q 014141          160 LSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLK-VVGSSIPLKCLDIQFC  222 (430)
Q Consensus       160 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~-i~~~~~~L~~L~l~~c  222 (430)
                      +..+++|++|+|++..+++  +.. +.++++|+.|.|.++. ++.+. +....++|+.|.+.++
T Consensus        44 l~~L~~L~~L~Ls~n~I~~--i~~-l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEK--ISS-LSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             HHHTTTCCEEECSEEEESC--CCC-HHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEE
T ss_pred             HhcccccceeECcccCCCC--ccc-ccCCccccChhhcccc-cccccccccccccccccccccc
Confidence            3467889999999888864  221 5678889999988773 22221 1111245666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0057  Score=51.89  Aligned_cols=65  Identities=22%  Similarity=0.252  Sum_probs=41.7

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY  223 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~  223 (430)
                      .+.++++|++|.|.+..+....-...+.+++.+++|.+..+..+..+...  ..+++|+.|.+.++.
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhh
Confidence            35678999999998774332100112456888888888777655443222  345788888888764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=95.72  E-value=0.00019  Score=59.91  Aligned_cols=41  Identities=7%  Similarity=0.109  Sum_probs=26.5

Q ss_pred             HHHhhcCCcccceeeccCCCCceeeEecCCCCcceEEEeecC
Q 014141          182 EFFIHNCPLLENLRITQSPDLLSLKVVGSSIPLKCLDIQFCY  223 (430)
Q Consensus       182 ~~ll~~cp~Le~L~L~~~~~~~~~~i~~~~~~L~~L~l~~c~  223 (430)
                      ..-++..++|+.|.|.++. ++.+.--..+++|+.|.++++.
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~   81 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL   81 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEE
T ss_pred             hhHHhcccccceeECcccC-CCCcccccCCccccChhhcccc
Confidence            3446778999999998773 3333211234678888877664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.63  E-value=0.0012  Score=58.88  Aligned_cols=59  Identities=12%  Similarity=0.006  Sum_probs=28.4

Q ss_pred             hccCCCceEEEEecceeeecccccC--CCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          276 VSYLPQLKTLELDGCNEVFAQFSQR--EFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       276 ~~~~~~l~~L~l~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ...+++++.+.+.... +.. ..+.  .+++|+.|+++...-   . ..++.-+.++|+|+.|+++.
T Consensus       217 ~~~~~~l~~l~~~~~~-l~~-~~~~~~~~~~L~~L~Ls~N~l---~-g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         217 FGSDKNTQKIHLAKNS-LAF-DLGKVGLSKNLNGLDLRNNRI---Y-GTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CCTTSCCSEEECCSSE-ECC-BGGGCCCCTTCCEEECCSSCC---E-ECCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccc-ccc-cccccccccccccccCccCee---c-ccCChHHhCCCCCCEEECcC
Confidence            3455566666665544 211 1111  155666666633211   0 02334455667777777643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.54  E-value=0.0023  Score=56.87  Aligned_cols=89  Identities=21%  Similarity=0.256  Sum_probs=53.5

Q ss_pred             CCCCCCCCCCCCceEEEeeE-EEcchhHHHHhhcCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEE--E
Q 014141          155 QSGCGLSGIKSLRSLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIE--I  230 (430)
Q Consensus       155 ~~p~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~--i  230 (430)
                      .+|+.++++++|++|+|.++ .+.+ .+..-++.+++|+.|+|.++...... .......+|+.+.+..+.....+.  +
T Consensus        67 ~lp~~l~~L~~L~~L~Ls~~N~l~g-~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l  145 (313)
T d1ogqa_          67 PIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEES-CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             CCChHHhcCcccccccccccccccc-ccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh
Confidence            35566788999999999875 3432 23334678899999999988532211 112234677777776543211110  1


Q ss_pred             -eCCceeEEEEecce
Q 014141          231 -SAPNLLSFKYIGQD  244 (430)
Q Consensus       231 -~~P~L~~L~~~~~~  244 (430)
                       ..+.|+.+.+.+..
T Consensus       146 ~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         146 SSLPNLVGITFDGNR  160 (313)
T ss_dssp             GGCTTCCEEECCSSC
T ss_pred             ccCcccceeeccccc
Confidence             34667777766553

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.88  E-value=0.0061  Score=49.88  Aligned_cols=79  Identities=14%  Similarity=0.056  Sum_probs=44.7

Q ss_pred             CCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCcee-eEecCCCCcceEEEeecCCccEEEE----eCCceeEE
Q 014141          164 KSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSL-KVVGSSIPLKCLDIQFCYSIKEIEI----SAPNLLSF  238 (430)
Q Consensus       164 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~-~i~~~~~~L~~L~l~~c~~l~~i~i----~~P~L~~L  238 (430)
                      +++++|.|++..++...-...+.+.++|+.|.|.+....... ..-...++|+.|.+++.. +..+.-    ..|+|+.|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCccccc
Confidence            688999998887754222334567888999998876432211 111234667777776654 333321    12455555


Q ss_pred             EEecc
Q 014141          239 KYIGQ  243 (430)
Q Consensus       239 ~~~~~  243 (430)
                      ++.+.
T Consensus       108 ~L~~N  112 (192)
T d1w8aa_         108 NLYDN  112 (192)
T ss_dssp             ECCSS
T ss_pred             ccCCc
Confidence            55444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.88  E-value=0.0076  Score=48.14  Aligned_cols=24  Identities=8%  Similarity=0.127  Sum_probs=15.7

Q ss_pred             hhHHHHhhcCCcccceeeccCCCC
Q 014141          179 EVVEFFIHNCPLLENLRITQSPDL  202 (430)
Q Consensus       179 ~~l~~ll~~cp~Le~L~L~~~~~~  202 (430)
                      +.++.+...+|.|++|.|.++..+
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i   28 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRV   28 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSS
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCC
Confidence            346666677777777777765443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.83  E-value=0.0063  Score=48.67  Aligned_cols=122  Identities=13%  Similarity=0.129  Sum_probs=67.6

Q ss_pred             HhhccCCCceEEEEecceeeecccc------cCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccccc
Q 014141          274 SIVSYLPQLKTLELDGCNEVFAQFS------QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRI  347 (430)
Q Consensus       274 ~l~~~~~~l~~L~l~~~~~~~~~~l------~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~  347 (430)
                      ++..+.++|+.|.|.....+....+      ....++|++|+|+.+.-.......+...|+.++.|++|.|....    .
T Consensus         9 ~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~----i   84 (167)
T d1pgva_           9 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF----L   84 (167)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB----C
T ss_pred             HHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh----c
Confidence            4445556666666654221221111      11145566666644322223345577888889999999885532    1


Q ss_pred             ccCcccc--c-cCcCCCccEEEEeeee----cChhhHHHHHHHHhcccccccEEEecCCC
Q 014141          348 GKKRHQI--S-KHSHQHLKLVELQGFN----GREIDFELAFYVFENATMLEKMIIKPSGS  400 (430)
Q Consensus       348 ~~~~~~~--~-~~~~~~L~~v~i~~~~----g~~~e~~l~~~ll~~a~~Le~m~i~~~~~  400 (430)
                      .+.|...  . -....+|+.+.+.+-.    |.+....++..+-.| +.|+++.+.+...
T Consensus        85 ~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n-~sL~~l~l~~~~~  143 (167)
T d1pgva_          85 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN-ESLLRVGISFASM  143 (167)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC-SSCCEEECCCCCH
T ss_pred             chHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhC-CCccEeeCcCCCc
Confidence            2222111  1 2235679999887642    344556677765555 8899998876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.72  E-value=0.0073  Score=48.11  Aligned_cols=21  Identities=10%  Similarity=0.121  Sum_probs=15.7

Q ss_pred             hhhHHHHHhhCCCceEEEEEE
Q 014141          320 LLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       320 ~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ...+...++.+++|++|.+++
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHhCCCcCEEeCcC
Confidence            345777888888888888754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.26  E-value=0.015  Score=43.69  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=17.5

Q ss_pred             ceEEEeeEEEcchhHHHHhhcCCcccceeeccCC
Q 014141          167 RSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSP  200 (430)
Q Consensus       167 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~  200 (430)
                      +.|+|++..+++  +.. +..++.|++|.+.+..
T Consensus         1 R~L~Ls~n~l~~--l~~-l~~l~~L~~L~ls~N~   31 (124)
T d1dcea3           1 RVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR   31 (124)
T ss_dssp             SEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCC--Ccc-cccCCCCCEEECCCCc
Confidence            345555555542  111 4566777777777653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.09  E-value=0.01  Score=52.26  Aligned_cols=15  Identities=13%  Similarity=0.098  Sum_probs=8.1

Q ss_pred             ccCCCceEEEEecce
Q 014141          277 SYLPQLKTLELDGCN  291 (430)
Q Consensus       277 ~~~~~l~~L~l~~~~  291 (430)
                      ..+++|+.|.+..+.
T Consensus       239 ~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         239 ADHKYIQVVYLHNNN  253 (305)
T ss_dssp             TTCSSCCEEECCSSC
T ss_pred             ccccCCCEEECCCCc
Confidence            445556666655543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.09  E-value=0.01  Score=47.21  Aligned_cols=122  Identities=17%  Similarity=0.156  Sum_probs=70.6

Q ss_pred             HhhccCCCceEEEEecceeeecccc------cCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEEecccccc
Q 014141          274 SIVSYLPQLKTLELDGCNEVFAQFS------QREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQIWNNGRRI  347 (430)
Q Consensus       274 ~l~~~~~~l~~L~l~~~~~~~~~~l------~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~~~~~~~~  347 (430)
                      .+..+.+.|+.|.+.....+....+      ....++|++|+++...-+......+...++..+.++.|++....    .
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~----~   86 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF----I   86 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC----C
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc----c
Confidence            4455666777777654321222111      11256677777755433334455678889999999999885421    1


Q ss_pred             ccCccc---cccCcCCCccEEEEeeee---cChhhHHHHHHHHhcccccccEEEecCCC
Q 014141          348 GKKRHQ---ISKHSHQHLKLVELQGFN---GREIDFELAFYVFENATMLEKMIIKPSGS  400 (430)
Q Consensus       348 ~~~~~~---~~~~~~~~L~~v~i~~~~---g~~~e~~l~~~ll~~a~~Le~m~i~~~~~  400 (430)
                      .+.+..   ..-...++|+.+.+....   |.+....++..+ +..+.|+++.+.+...
T Consensus        87 ~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L-~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          87 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANML-EKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHH-HHCSSCCEEECCCSSH
T ss_pred             cchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHH-HhCCCcCEEeCcCCCC
Confidence            122211   112346788988886432   334445666654 5678999999876543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.017  Score=53.48  Aligned_cols=55  Identities=18%  Similarity=0.308  Sum_probs=28.2

Q ss_pred             CceEEEEEeecCcchhhHHHHhhccCCCceEEEEecceeeeccc---c---cCCCCccceEEEE
Q 014141          254 QLVDVVFHVTPMVQKMHCIGSIVSYLPQLKTLELDGCNEVFAQF---S---QREFPKLMNLNIS  311 (430)
Q Consensus       254 ~L~~~~i~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~---l---~~~~~~L~~L~l~  311 (430)
                      .|+++.++......  ..+.+++..+++++.|.|..+. +....   +   ....++|++|+|+
T Consensus         3 ~l~~ld~~~~~i~~--~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs   63 (460)
T d1z7xw1           3 DIQSLDIQCEELSD--ARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLR   63 (460)
T ss_dssp             EEEEEEEESCCCCH--HHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECT
T ss_pred             CCCEEEeeCCcCCh--HHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECc
Confidence            45666665433321  2233556666777777776665 33211   1   1225666666663

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=89.58  E-value=0.27  Score=43.00  Aligned_cols=54  Identities=20%  Similarity=0.238  Sum_probs=32.3

Q ss_pred             hccCCCceEEEEecceeeecccccCCCCccceEEEEEeecCccchhhHHHHHhhCCCceEEEEEE
Q 014141          276 VSYLPQLKTLELDGCNEVFAQFSQREFPKLMNLNISFTAANQETLLGLSFIMKACPFLEKLVLQI  340 (430)
Q Consensus       276 ~~~~~~l~~L~l~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~l~~lL~~~p~L~~L~l~~  340 (430)
                      ...+++|+.|++..+. +.  .+|..+++|++|+++...     ...+.   +..++|++|+++.
T Consensus       280 ~~~~~~L~~L~Ls~N~-l~--~lp~~~~~L~~L~L~~N~-----L~~l~---~~~~~L~~L~L~~  333 (353)
T d1jl5a_         280 CDLPPSLEELNVSNNK-LI--ELPALPPRLERLIASFNH-----LAEVP---ELPQNLKQLHVEY  333 (353)
T ss_dssp             CCCCTTCCEEECCSSC-CS--CCCCCCTTCCEEECCSSC-----CSCCC---CCCTTCCEEECCS
T ss_pred             cccCCCCCEEECCCCc-cC--ccccccCCCCEEECCCCc-----CCccc---cccCCCCEEECcC
Confidence            3456778888887765 32  345557888888774321     11111   2345788887744

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=0.059  Score=42.09  Aligned_cols=67  Identities=21%  Similarity=0.094  Sum_probs=37.9

Q ss_pred             CCCCCCCCCCCCceEEEeeE-EEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecC
Q 014141          155 QSGCGLSGIKSLRSLTLCAV-NVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCY  223 (430)
Q Consensus       155 ~~p~~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~  223 (430)
                      ..|..+.++++|+.|++.+. .++.-. ...+.+.++|+.|.|.++. ++.+...  ..+++|+.|.+++..
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred             cCcccccCccccCeeecCCCccccccC-chhhccccccCcceeeccc-cCCcccccccccccccceeccCCC
Confidence            44555567788888888644 232100 1125578888888888774 3333221  234566666665543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.67  E-value=0.08  Score=42.75  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=46.0

Q ss_pred             CCCCCCCCceEEEeeEEEcchhHHHHhhcCCcccceeeccCCCCceeeEe--cCCCCcceEEEeecCCccEE
Q 014141          159 GLSGIKSLRSLTLCAVNVTGEVVEFFIHNCPLLENLRITQSPDLLSLKVV--GSSIPLKCLDIQFCYSIKEI  228 (430)
Q Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~~~~~~~~~i~--~~~~~L~~L~l~~c~~l~~i  228 (430)
                      .+.++++|++|+|.+..+..- ....+.+.+.|+.|.|.+.. ++.+.-.  ..+++|+.|.+.+.. +..+
T Consensus        49 ~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L~L~~N~-l~~i  117 (192)
T d1w8aa_          49 LFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQ-ISCV  117 (192)
T ss_dssp             SGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSC-CCEE
T ss_pred             ccCCCceEeeeeccccccccc-cccccccccccceeeecccc-ccccCHHHHhCCCcccccccCCcc-cccc
Confidence            446789999999998866532 12345678999999999884 3333222  346889999988765 4444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=84.39  E-value=0.25  Score=43.27  Aligned_cols=53  Identities=13%  Similarity=0.061  Sum_probs=32.9

Q ss_pred             CCCcceEEEeecCCccEEEEeCCceeEEEEecceeeeecCCCCCceEEEEEeec
Q 014141          211 SIPLKCLDIQFCYSIKEIEISAPNLLSFKYIGQDINLHVGSLPQLVDVVFHVTP  264 (430)
Q Consensus       211 ~~~L~~L~l~~c~~l~~i~i~~P~L~~L~~~~~~~~~~~~~~~~L~~~~i~~~~  264 (430)
                      +++|+.|.+.+|. +..+.-..|+|+.|++.+..+.-.-...++|+.++++.++
T Consensus       283 ~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~L~~l~~~~~~L~~L~L~~N~  335 (353)
T d1jl5a_         283 PPSLEELNVSNNK-LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNP  335 (353)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCc-cCccccccCCCCEEECCCCcCCccccccCCCCEEECcCCc
Confidence            4678888887775 5554444578888887766543211234567877776543