Citrus Sinensis ID: 014145
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 359488288 | 1340 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.795 | 0.255 | 0.384 | 4e-48 | |
| 224083436 | 758 | predicted protein [Populus trichocarpa] | 0.834 | 0.473 | 0.303 | 3e-41 | |
| 255542484 | 2460 | phosphoprotein phosphatase, putative [Ri | 0.844 | 0.147 | 0.317 | 1e-39 | |
| 147787802 | 1517 | hypothetical protein VITISV_005047 [Viti | 0.853 | 0.241 | 0.294 | 9e-38 | |
| 358344895 | 906 | Resistance protein RGC2, partial [Medica | 0.809 | 0.384 | 0.325 | 9e-37 | |
| 302143647 | 759 | unnamed protein product [Vitis vinifera] | 0.860 | 0.487 | 0.280 | 1e-36 | |
| 357439633 | 1039 | Rpp4 candidate [Medicago truncatula] gi| | 0.823 | 0.340 | 0.284 | 4e-35 | |
| 147826471 | 1271 | hypothetical protein VITISV_031250 [Viti | 0.830 | 0.280 | 0.282 | 1e-34 | |
| 255574526 | 1232 | Disease resistance protein RFL1, putativ | 0.672 | 0.234 | 0.296 | 7e-34 | |
| 255581680 | 1126 | Disease resistance protein RPS2, putativ | 0.802 | 0.306 | 0.304 | 4e-33 |
| >gi|359488288|ref|XP_003633735.1| PREDICTED: LOW QUALITY PROTEIN: probable disease resistance protein At1g61310-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 207/369 (56%), Gaps = 27/369 (7%)
Query: 66 EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE 125
E+W+GQ L +SF NLR L++ +C ++L P++L + L NL L+V NC+ LEE+ LE
Sbjct: 920 EVWNGQ-LSLSF-GNLRSLMMQNCMSLLKVFPSSLFQSLQNLEVLKVENCNQLEEIFDLE 977
Query: 126 ELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPE----------LRYLAIEN 175
LN D H+G L PKL E+ L L+ IIE+ + LR L+I
Sbjct: 978 GLNVDGGHVG-LLPKLEEMCLTGCIPLEELILDGSRIIEIWQEQFPVESFCRLRVLSICE 1036
Query: 176 CPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTD--QIQPLFDEK---VAFPQLRYLEL 230
D+ I +S++ EKLT + + Q++ L DE+ A +LR LEL
Sbjct: 1037 YRDILVVIPSSMLQRL---HTLEKLTVRSCGSVKEVVQLEGLVDEENHFRALARLRELEL 1093
Query: 231 SRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN 290
+ L ++++LWKEN F NL LKI +C L LV S NLA+L++S C LIN
Sbjct: 1094 NDLPELKYLWKENSNVGPHFQNLEILKIWDCDNLMNLVPSSVSFHNLASLDISYCCSLIN 1153
Query: 291 VLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFC 350
+L ++SLV KI M+++++ + GE A + F +L + L LP+LTSFC
Sbjct: 1154 LLPPLIAKSLVQHKIFKIGRSDMMKEVVANE-GENAGDEITFCKLEEIELCVLPNLTSFC 1212
Query: 351 LGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTI 410
G Y+L FP LE VVV +CP MKIFSQG++ P+L++V E G+++ W+ +LN TI
Sbjct: 1213 SGVYSLSFPVLERVVVEECPKMKIFSQGLLVTPRLDRV-----EVGNNKEHWKDDLNTTI 1267
Query: 411 KKLFNEMNS 419
LFN N+
Sbjct: 1268 HLLFNTCNA 1276
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224083436|ref|XP_002307026.1| predicted protein [Populus trichocarpa] gi|222856475|gb|EEE94022.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 131/432 (30%), Positives = 210/432 (48%), Gaps = 73/432 (16%)
Query: 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNL 107
+GF +K L++ FP+L++ WH Q LP +FF+NL L VD+ L A+P+ L++ +N+L
Sbjct: 326 VGFDGVKRLKVSDFPQLKKRWHCQ-LPFNFFSNLTSLTVDEYCYSLDALPSTLLQFMNDL 384
Query: 108 RWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMP 166
L+VRNCD LE V L+ L ++ + P L+EL L+ L L+ CN + I+E
Sbjct: 385 LELQVRNCDLLEGVFDLKGLGPEEGRV--WLPCLYELNLIGLSSLRHICNTDPQGILEFR 442
Query: 167 ELRYLAIENCPDMETF----ISNSVVH----VTTDNKEPEKLTSEENFFLTDQIQPLFDE 218
L +L + +C + ++ S+VH V + + E++ ++E + +
Sbjct: 443 NLNFLEVHDCSSLINIFTPSMALSLVHLQKIVIRNCDKMEEIITKERAGEEEAMN----- 497
Query: 219 KVAFPQLRYLELSRLHKVQHLW-------------------------------------- 240
K+ FP L+ + L L ++ +++
Sbjct: 498 KIIFPVLKVIILESLPELSNIYSGSGVLNLTSLEEICIDDCPNMKIFISSLVEEPEPNSV 557
Query: 241 ------KENDESNKAFANLIRLKISECSKLQKL---------VTPSWHLENLATLEVSKC 285
++ N F L+ K++ +L+KL VT + C
Sbjct: 558 GKGKEQRQGQGGNYNFTALLNYKVA-FPELKKLRVDWNTIMEVTQRGQFRTEFFCRLKSC 616
Query: 286 HGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345
GL+N+ T ST++SLV L ++ IA CK + ++ Q G+EA ++F +L YL L L +
Sbjct: 617 LGLLNLFTSSTAKSLVQLVKLTIAHCKKMTVVVARQGGDEADDEIIFSKLEYLELLDLQN 676
Query: 346 LTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGN 405
LTSFC NYA FPSL+ +VV +CP MK FS GV+ PKL V + W GN
Sbjct: 677 LTSFCFENYAFRFPSLKEMVVEECPNMKSFSPGVLSTPKLQGVHWKKYSKNTVH--WHGN 734
Query: 406 LNDTIKKLFNEM 417
L+ TI+ L+ EM
Sbjct: 735 LDITIQHLYTEM 746
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 170 bits (431), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 136/429 (31%), Positives = 211/429 (49%), Gaps = 66/429 (15%)
Query: 1 MTRCPNMKTFSQGIVSTPKLHEVQ--EEGELRRWEGNLNSTIQKCYEEMIGFRDIKYLQL 58
+T CP M+ FS GI++ PKL +V +EG+ R G+LN+T Q+ Y EM+G +++LQL
Sbjct: 1516 VTACPRMEFFSHGIITAPKLEKVSLTKEGDKWRSVGDLNTTTQQLYREMVGLNGVQHLQL 1575
Query: 59 GHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118
FP L E WH Q LP FF NL+ LVVD+C+ S++P+NL+ LN L LEVRNCDSL
Sbjct: 1576 SEFPTLVEKWHDQ-LPAYFFYNLKSLVVDNCSFPSSSVPSNLLPFLNELEVLEVRNCDSL 1634
Query: 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR-----------FCNFTE-NIIEMP 166
+V E N D + G L P L + L+DLP+L+ F N T NI
Sbjct: 1635 AKVFDFEWSN-DYGYAGHL-PNLKKFHLIDLPRLRHIWDDISSEISGFKNLTVLNIHNCS 1692
Query: 167 ELRYL---------------AIENCPDMETFIS---------NSVVHVTTDNKEPEKLTS 202
LRY+ + NC ++ I N ++ + E L S
Sbjct: 1693 SLRYIFNPIICMGLVQLQEVEVRNCALVQAIIREGLAKEEAPNEIIFPLLKSISLESLPS 1752
Query: 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS 262
NFF I V P L+ + + + + A +I K+ E S
Sbjct: 1753 LINFFSGSGI-------VRCPSLKEITIVNCPATFTCTLLRESESNATDEIIETKV-EFS 1804
Query: 263 KLQKL------VTPSWH---------LENLATLEVSKCHGLINVLTLSTSESLVNLGRMK 307
+L+ L + WH +++LA+L V C L + L+ S ++LV+L +++
Sbjct: 1805 ELKILKLFSINIEKIWHAHQLEMYASIQHLASLTVDGCGHLKHALSSSMVQTLVHLKKLE 1864
Query: 308 IADCKMIEQIIQLQ-VGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVV 366
+ +C+M+E++I + EE+ ++ +L +L L LP L F N +EFP ++ + +
Sbjct: 1865 VCNCRMMEEVIATEGFEEESTSRMLLRQLEFLKLKDLPELAQFFTSNL-IEFPVMKELWL 1923
Query: 367 RQCPTMKIF 375
+ CP + F
Sbjct: 1924 QNCPKLVAF 1932
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147787802|emb|CAN71755.1| hypothetical protein VITISV_005047 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 164 bits (415), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/425 (29%), Positives = 205/425 (48%), Gaps = 58/425 (13%)
Query: 45 EEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCL 104
+E + + L L P++++IW+ + F NL+ + +D+C ++ + PA+L+R L
Sbjct: 1021 KEGVTVTQLSQLILRSLPKVEKIWNEDPHGILNFQNLQSITIDECQSLKNLFPASLVRDL 1080
Query: 105 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE 164
L+ L V C +EE++ + N +FPK+ L L L +L+ F
Sbjct: 1081 VQLQELHVLCC-GIEEIVAKD--NGVDTQATFVFPKVTSLELSYLHQLRSFYPGAHPSW- 1136
Query: 165 MPELRYLAIENCPDMETFISNS--------------------------VVHVTTDNKEPE 198
P L+ L + C + F + + +T D+ +
Sbjct: 1137 WPSLKQLTVRECYKVNVFAFENPTFRQRHHEGNLDMPLSLLQPVEFPNLEELTLDHNKDT 1196
Query: 199 KLTSEENFFLTDQIQPL--FDEKVAFPQLRYLE----------LSRLHKV--------QH 238
++ E+ F D L D+ + F ++ LE L RL ++ H
Sbjct: 1197 EIWPEQ--FPVDSFPRLRVLDDVIQFKEVFQLEGLDNENQAKRLGRLREIWLCDLPELTH 1254
Query: 239 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298
LWKEN + +L L++ C +L LV S +NLATL+V C L ++++ S ++
Sbjct: 1255 LWKENSKPGLDLLSLKSLEVRNCVRLINLVPSSASFQNLATLDVQSCGSLRSLISPSVAK 1314
Query: 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEF 358
SLV L +KI M+E+++ + GE A + F +L ++ L CL +LTSF G Y F
Sbjct: 1315 SLVKLKTLKIGGSHMMEEVVANEEGEAADE-IAFCKLQHMALKCLSNLTSFSSGGYIFSF 1373
Query: 359 PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMN 418
PSLEH+V+++CP MKIFS G+V P+L ++K GDDE W+ +LN TI LF +
Sbjct: 1374 PSLEHMVLKKCPKMKIFSPGLVTTPRLERIKV-----GDDEWHWQDDLNTTIHNLFINKH 1428
Query: 419 SKEKI 423
+E I
Sbjct: 1429 DEETI 1433
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358344895|ref|XP_003636521.1| Resistance protein RGC2, partial [Medicago truncatula] gi|355502456|gb|AES83659.1| Resistance protein RGC2, partial [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 190/362 (52%), Gaps = 14/362 (3%)
Query: 53 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEV 112
+K L+L + P+L+ +W F NL + V DC +++S P ++ R + L+ L V
Sbjct: 113 LKKLKLSNLPKLKHVWKEDPHYTMRFQNLSVVSVADCKSLISLFPLSVARDMMQLQSLLV 172
Query: 113 RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 172
NC +EE++ EE E + +FP L + L +L KLK F ++ + L+ +
Sbjct: 173 SNC-GIEEIVVKEE--GPDEMVKFVFPHLTSIELDNLTKLKAFFVGVHSL-QCKSLKTIK 228
Query: 173 IENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 232
+ CP +E F + + + + +++ + F+ ++ L + PQ R LEL +
Sbjct: 229 LFKCPRIELFKAEPLKLQESSKNVEQNISTYQPLFVFEE--ELLTSVESTPQFRELELLQ 286
Query: 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 292
LHK++++ KE + + L + + +CS L KLV S + LEV+ C+GLIN++
Sbjct: 287 LHKLKYICKEGFQMDPFLHFLESIDVCQCSSLIKLVPSSVTFSYMTYLEVTNCNGLINLI 346
Query: 293 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352
T ST++SLV L MKI C +E I+ + E+ +VF L L L L L FC
Sbjct: 347 THSTAKSLVKLTTMKIEMCNWLEDIVNGK--EDETNEIVFCSLQTLELISLQRLIRFCSC 404
Query: 353 NYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKK 412
+ FP LE VVV++CP M++FS GV + L V+ D+E EG+LN TIKK
Sbjct: 405 PCPIMFPLLEVVVVKECPRMELFSLGVTNTTNLQNVQ------TDEENHREGDLNRTIKK 458
Query: 413 LF 414
+F
Sbjct: 459 MF 460
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302143647|emb|CBI22400.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 128/456 (28%), Positives = 210/456 (46%), Gaps = 86/456 (18%)
Query: 45 EEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCL 104
+E + + L L P++++IW+ + F NL+ + +D C ++ + PA+L++ L
Sbjct: 304 KEGVTVTQLSQLILRLLPKVEKIWNKDPHGILNFQNLKSIFIDKCQSLKNLFPASLVKDL 363
Query: 105 NNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE 164
L LE+R+C +EE++ + N + +FPK+ L L++L +L+ F + +
Sbjct: 364 VQLEKLELRSC-GIEEIVAKD--NEAETAAKFVFPKVTSLILVNLHQLRSFYP-GAHTSQ 419
Query: 165 MPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ-PLFDEKV--- 220
P L+ L + C + F S + ++ + S + FL Q+ P +E +
Sbjct: 420 WPLLKELIVRACDKVNVFASETPTFQRRHHEGSFDMPSLQPLFLLQQVALPYLEELILND 479
Query: 221 --------------AFPQLRYLE---------------LSRLHKVQHL------------ 239
+FP+LRYL+ L R H ++ L
Sbjct: 480 NGNTEIWQEQFPMDSFPRLRYLKVYGYIDILVVIPSFMLQRSHNLEKLNVRRCSSVKEIF 539
Query: 240 -------------------------------WKENDESNKAFANLIRLKISECSKLQKLV 268
WKEN +S +L L++ C L LV
Sbjct: 540 QLEGLDEENQAQRLGRLREIWLRDLPALTHLWKENSKSILDLQSLESLEVWNCDSLISLV 599
Query: 269 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG 328
S +NL TL+V C L ++++ S ++SLV L ++KI M+E+++ + G EA
Sbjct: 600 PCSVSFQNLDTLDVWSCSNLRSLISPSVAKSLVKLRKLKIGGLHMMEEVVANE-GGEAVD 658
Query: 329 CVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKV 388
+ F +L ++ L CLP+LTSF G Y FPSLEH+VV +CP MKIFS +V PKL +V
Sbjct: 659 EIAFYKLQHMVLLCLPNLTSFNSGGYIFSFPSLEHMVVEECPKMKIFSPSLVTTPKLERV 718
Query: 389 KPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKEKIE 424
E DDE W +LN TI LF + + ++E
Sbjct: 719 -----EVADDEWHWHNDLNTTIHNLFKKTHGNVEVE 749
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357439633|ref|XP_003590094.1| Rpp4 candidate [Medicago truncatula] gi|355479142|gb|AES60345.1| Rpp4 candidate [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 119/419 (28%), Positives = 200/419 (47%), Gaps = 65/419 (15%)
Query: 53 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEV 112
+K L+L + P+L+ +W F NL + V++CT+++S P + R + L+ L V
Sbjct: 109 LKKLKLSNVPKLKHVWKEDPHDTMRFQNLSEVSVEECTSLISIFPLTVARDMMQLQSLRV 168
Query: 113 RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLA 172
NC +EE++ EE E + +F L + L LPKLK F ++ + L+ +
Sbjct: 169 SNC-GIEEIVAKEE--GTNEIVNFVFSHLTFIRLELLPKLKAFFVGVHSL-QCKSLKTIY 224
Query: 173 IENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQ---------------PLFD 217
+ CP +E F + H + + +++ + F+ ++ Q +
Sbjct: 225 LFGCPKIELF-KTELRHQESSRSDVLNISTYQPLFVIEESQYSGVQFNNVKHIDVCEFYT 283
Query: 218 EKVAFP----------------------------------------QLRYLELSRLHKVQ 237
E+ FP +L+ LEL +LH++Q
Sbjct: 284 EEATFPYWFLKNVPSLESLLVQWSLFTEIFQGEQLISTEKETQISPRLKQLELGQLHRLQ 343
Query: 238 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTS 297
++ KE + + + + ++ CS L KLV S L LEV+ C+GLIN++T ST+
Sbjct: 344 YICKEGFKMDPILHFIESINVNHCSSLIKLVPSSVTFTYLTYLEVTSCNGLINLITYSTA 403
Query: 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALE 357
+SLV L MKI C ++E I+ + E + + F L L L LP + FC +
Sbjct: 404 KSLVKLTTMKIKMCNLLEDIVNGKEDETKE--IEFCSLQSLELISLPRVCRFCSCPCPIT 461
Query: 358 FPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNE 416
FP LE VVV++CP M++ S GV + P L V+ E+ ++E WEG+LN ++KKLF++
Sbjct: 462 FPLLEVVVVKECPRMELLSLGVTNTPNLQIVQI---EESNEENHWEGDLNRSVKKLFDD 517
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147826471|emb|CAN72797.1| hypothetical protein VITISV_031250 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 122/432 (28%), Positives = 198/432 (45%), Gaps = 75/432 (17%)
Query: 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLR 108
F ++ L + + ++ +WH Q SF+ L+HL V C +L+ P ++ + L L
Sbjct: 842 AFPXLEXLHVENLDNVRALWHNQLSADSFYK-LKHLHVASCNKILNVFPLSVAKALVQLE 900
Query: 109 WLEVRNCDSLEEVLHLEELNADKEHIGPLF--PKLFELTLMDLPKLKRFCNFTENIIEMP 166
L + +C+ LE ++ E+ + D++ PLF PKL TL L +LKRF + P
Sbjct: 901 DLCILSCEXLEVIVVNEDEDEDEDETTPLFLFPKLTSFTLESLHQLKRFYS-GRFASRWP 959
Query: 167 ELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDE-------- 218
L+ L + NC +E + DNK + L F + + P +E
Sbjct: 960 LLKELKVCNCDKVEILFQEIGLEGELDNKIQQSL-----FLVEKEAFPNLEELRLTLKGX 1014
Query: 219 ---------KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT 269
+V+F +LR L +++ H + + N + NL RL++++C + +++
Sbjct: 1015 VEIWRGQFSRVSFSKLRVLNITKCHGILVVISSN--MVQILHNLERLEVTKCDSVNEVIQ 1072
Query: 270 P---------------------------------SWHLENLATLEVSKCHGLINVLTLST 296
S +L++ TLE+ C LIN++TLS
Sbjct: 1073 VERLSSEEFHVDTLPRLTEIHLEDLPMLMHLSGLSRYLQSFETLEIVSCGSLINLVTLSM 1132
Query: 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356
++ LV L + I +C M+++I+ + E + F L L LDCLP+L SFC YA
Sbjct: 1133 AKRLVQLKTLIIKECHMVKEIVANEGDEPPNDEIDFTRLTRLELDCLPNLKSFCSARYAF 1192
Query: 357 EFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDD--------------EGCW 402
FPSLE + V CP MK F +GV+D P+L V+ + + D E CW
Sbjct: 1193 RFPSLEEISVAACPKMKFFCKGVLDTPRLKCVQTGDHSEVLDTPRLQCVQMGDLFFERCW 1252
Query: 403 EGNLNDTIKKLF 414
E +LN TI K+F
Sbjct: 1253 ESDLNTTIHKMF 1264
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 170/354 (48%), Gaps = 65/354 (18%)
Query: 65 QEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHL 124
+ IWHG+ ++L+ L+V++C + ++IR L LE+ NC+ +E ++
Sbjct: 934 ETIWHGELSTAC--SHLKSLIVENCRDWKYLFTLSMIRSFIRLEKLEICNCEFMEGIIRT 991
Query: 125 EELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF-I 183
EE + ++ I +FP+ L +L ++N D+ + I
Sbjct: 992 EEFSEEEGMIKLMFPR---------------------------LNFLKLKNLSDVSSLRI 1024
Query: 184 SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEN 243
+ ++ P LR+LEL+RL+ ++++W N
Sbjct: 1025 GHGLIEC--------------------------------PSLRHLELNRLNDLKNIWSRN 1052
Query: 244 DESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNL 303
+ N+ LK+ C L L PS +NL LEV C +IN++T S + S+V L
Sbjct: 1053 IHFDPFLQNVEILKVQFCENLTNLAMPSASFQNLTCLEVLHCSKVINLVTSSVATSMVQL 1112
Query: 304 GRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEH 363
M I DC M+ I+ + E A G ++F +L L L L +LTSFCL FPSLE
Sbjct: 1113 VTMHIEDCDMLTGIVADEKDETA-GEIIFTKLKTLALVRLQNLTSFCLRGNTFNFPSLEE 1171
Query: 364 VVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEM 417
V V +CP +++FS G+ A KL +V E +D+ WEGNLN TI+++++EM
Sbjct: 1172 VTVAKCPKLRVFSPGITIASKLERV--LIEFPSEDKWRWEGNLNATIEQMYSEM 1223
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581680|ref|XP_002531643.1| Disease resistance protein RPS2, putative [Ricinus communis] gi|223528728|gb|EEF30739.1| Disease resistance protein RPS2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 128/420 (30%), Positives = 195/420 (46%), Gaps = 75/420 (17%)
Query: 68 WHGQALPVSF-FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126
W G SF F NL+ L V C+ + ++ L L+ LEV++CD + E+++ E
Sbjct: 712 WQG-----SFDFKNLKILKVHSCSKLRYVFTPSMCLGLVQLQELEVKSCDVMAEIIN-EG 765
Query: 127 LNADKEHIGPLFPKLFELTLMDLPKLKRF-------------------------CNF--- 158
L ++ + LFP L + L LP+L F C F
Sbjct: 766 LAMEETNKEVLFPLLNSIILESLPRLINFSSGSSVVQCPSLKEIRIVDCPTAFTCTFLGE 825
Query: 159 -----TENIIE----MPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF-- 207
T IIE P L L I N +++ S+ + + + K+ E
Sbjct: 826 AEANATHGIIEPEVVFPNLEELQILNMDNLKMIWSSQLQSDSFGKVKVLKMEQSEKLLKI 885
Query: 208 -----------LTDQI-------QPLFD--------EKVAFPQLRYLELSRLHKVQHLWK 241
L D I + +FD EKVA QLR L + L ++H+W
Sbjct: 886 YPSGMLRSLRNLEDLIIKKCSTLEVVFDLKEVTNIKEKVA-SQLRKLVMEDLPNLKHVWN 944
Query: 242 ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301
E+ +F L + +S+C L L S ++L TL++ KC+ L +++ ST++SL+
Sbjct: 945 EDRLGLVSFDKLSSVYVSQCDSLITLAPSSACFQSLTTLDLVKCNKLESLVASSTAKSLI 1004
Query: 302 NLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSL 361
L M I +C +++I+ + G+E ++F L L L CLPSL SFC + +FP L
Sbjct: 1005 QLTEMSIKECDGMKEILTNE-GDEPNEEIIFSRLRSLKLQCLPSLLSFCSSVHCFKFPFL 1063
Query: 362 EHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKE 421
V+VRQCP M++FS+G V PKL V+ E+ D E W GNLN TI++LF +M E
Sbjct: 1064 TQVIVRQCPKMQVFSRGSVITPKLQSVQQLTEDKTDKER-WSGNLNATIQQLFIDMVDDE 1122
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| TAIR|locus:2171589 | 948 | AT5G47260 [Arabidopsis thalian | 0.267 | 0.121 | 0.264 | 0.00074 |
| TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00074, Sum P(3) = 0.00074
Identities = 33/125 (26%), Positives = 62/125 (49%)
Query: 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311
N++ + I +Q+ + P + +N+ T+ + +C L ++ L + L G + +++C
Sbjct: 700 NILEITIDWRCTIQREIIPQF--QNIRTMTIHRCEYLRDLTWLLLAPCL---GELSVSEC 754
Query: 312 KMIEQIIQLQVGEEAKGCVV---FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368
+E++I G F+ L L LD LP L S L FP LE++V+R+
Sbjct: 755 PQMEEVISKDKAMAKLGNTSEQPFQNLTKLVLDGLPKLESIYWT--PLPFPVLEYLVIRR 812
Query: 369 CPTMK 373
CP ++
Sbjct: 813 CPELR 817
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 4e-06 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 74/286 (25%), Positives = 129/286 (45%), Gaps = 38/286 (13%)
Query: 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALP-VSFFNNLRHLVVDDCTNMLSAI 96
S ++K ++ + ++ + L L+EI P +S NL L + DC++++ +
Sbjct: 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEI------PDLSMATNLETLKLSDCSSLVE-L 673
Query: 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156
P++ I+ LN L L++ C++LE + G L+ L L +LK F
Sbjct: 674 PSS-IQYLNKLEDLDMSRCENLEIL-----------PTGINLKSLYRLNLSGCSRLKSFP 721
Query: 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLF 216
+ + NI + +L AIE P S + + +N + L ++ L +++QPL
Sbjct: 722 DISTNISWL-DLDETAIEEFP--------SNLRL--ENLDELILCEMKSEKLWERVQPLT 770
Query: 217 D-EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275
+ P L L LS + + L S + L L+I C L+ L T +LE
Sbjct: 771 PLMTMLSPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCINLETLPT-GINLE 825
Query: 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM-IEQIIQL 320
+L +L++S C L +ST+ S +NL R I + IE+ L
Sbjct: 826 SLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNL 871
|
syringae 6; Provisional. Length = 1153 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.9 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.83 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.8 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.78 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.64 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.62 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.57 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.57 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.39 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.36 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.34 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.31 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.23 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.2 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.13 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.11 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.11 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.07 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 98.92 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.85 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.69 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.68 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 98.64 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.51 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.46 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 98.42 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.31 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.29 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.27 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.2 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.19 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.1 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.09 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.09 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.07 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.0 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.97 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.9 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.64 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.61 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 97.45 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.34 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.24 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 97.22 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 96.84 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 96.82 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.66 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.63 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.61 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 96.45 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.18 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.17 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 96.08 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 96.06 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.68 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 95.23 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 94.73 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 94.6 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 94.4 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.35 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 94.11 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 94.03 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 93.69 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 92.34 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 91.82 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 91.17 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 89.97 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 88.92 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 87.0 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 83.89 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 83.29 |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=223.18 Aligned_cols=302 Identities=20% Similarity=0.324 Sum_probs=186.5
Q ss_pred ecccccchhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEE
Q 014145 32 WEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLE 111 (430)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 111 (430)
|.++ +++.+|... .+.+|+.|++.++. ++.+|.+. ..+++|+.|++++|.++..++ . +..+++|++|+
T Consensus 596 ~~~~---~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~----~~l~~Lk~L~Ls~~~~l~~ip-~--ls~l~~Le~L~ 663 (1153)
T PLN03210 596 WDKY---PLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGV----HSLTGLRNIDLRGSKNLKEIP-D--LSMATNLETLK 663 (1153)
T ss_pred ecCC---CCCCCCCcC-CccCCcEEECcCcc-cccccccc----ccCCCCCEEECCCCCCcCcCC-c--cccCCcccEEE
Confidence 5553 355566554 56899999999876 88888887 789999999999998777654 3 56789999999
Q ss_pred EecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceE
Q 014145 112 VRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVH 189 (430)
Q Consensus 112 l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~ 189 (430)
+++|..+..+ |..+ ..+++|+.|++.+|..+..+|.. .++++|++|.+.+|..+..++ +.+|+.
T Consensus 664 L~~c~~L~~l---------p~si-~~L~~L~~L~L~~c~~L~~Lp~~----i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~ 729 (1153)
T PLN03210 664 LSDCSSLVEL---------PSSI-QYLNKLEDLDMSRCENLEILPTG----INLKSLYRLNLSGCSRLKSFPDISTNISW 729 (1153)
T ss_pred ecCCCCcccc---------chhh-hccCCCCEEeCCCCCCcCccCCc----CCCCCCCEEeCCCCCCccccccccCCcCe
Confidence 9999988887 6665 88999999999999999988764 378999999999999888876 568999
Q ss_pred EEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCch----hhhhcccccEEEeecCCCcc
Q 014145 190 VTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDE----SNKAFANLIRLKISECSKLQ 265 (430)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~----~~~~l~~L~~L~l~~c~~l~ 265 (430)
|+++++.+..+++ ...+++|++|.+.++... .++....+ ....+++|+.|++++|+.+.
T Consensus 730 L~L~~n~i~~lP~----------------~~~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~ 792 (1153)
T PLN03210 730 LDLDETAIEEFPS----------------NLRLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792 (1153)
T ss_pred eecCCCccccccc----------------cccccccccccccccchh-hccccccccchhhhhccccchheeCCCCCCcc
Confidence 9999998766541 123445555555443211 00000000 00223455556665555555
Q ss_pred cccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCC
Q 014145 266 KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345 (430)
Q Consensus 266 ~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 345 (430)
.+|..+.++++|+.|++++|..++.+|.. .++++|+.|++++|..+..++.. ..+|+.|++.+. .
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~n-~ 857 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSRT-G 857 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEEECCCCCcccccccc-----------ccccCEeECCCC-C
Confidence 55555555555666666655555555432 14555555666555554433210 233444444432 3
Q ss_pred CceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 346 LTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 346 L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
++.++.. ...+++|+.|++.+|++++.+|.....+++|+.+++.+|
T Consensus 858 i~~iP~s--i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 858 IEEVPWW--IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CccChHH--HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 3333321 112444444444444444444443334444444444443
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-19 Score=198.62 Aligned_cols=285 Identities=24% Similarity=0.356 Sum_probs=200.8
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
+.+..+|.+...+++|+.|+++++..++.++. . ..+++|+.|++++|..+..++.. +..+++|+.|++++|..
T Consensus 621 s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l----s~l~~Le~L~L~~c~~L~~lp~s--i~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 621 SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L----SMATNLETLKLSDCSSLVELPSS--IQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred ccccccccccccCCCCCEEECCCCCCcCcCCc-c----ccCCcccEEEecCCCCccccchh--hhccCCCCEEeCCCCCC
Confidence 56777888888999999999999877776442 1 46899999999999988775443 78899999999999998
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEec
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTD 193 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~ 193 (430)
++.+ |.++ .+++|+.|++++|..+..+|. ...+|++|.+.++. ++.+| ..+|+.|.+.
T Consensus 694 L~~L---------p~~i--~l~sL~~L~Lsgc~~L~~~p~------~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 694 LEIL---------PTGI--NLKSLYRLNLSGCSRLKSFPD------ISTNISWLDLDETA-IEEFPSNLRLENLDELILC 755 (1153)
T ss_pred cCcc---------CCcC--CCCCCCEEeCCCCCCcccccc------ccCCcCeeecCCCc-ccccccccccccccccccc
Confidence 8887 5543 689999999999988877754 24688899998775 66555 3467777776
Q ss_pred CCCCCcccC-CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcc
Q 014145 194 NKEPEKLTS-EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW 272 (430)
Q Consensus 194 ~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~ 272 (430)
++....+.. +..+ .. .....+++|+.|++++++.+..++. .+ ..+++|+.|++++|..++.+|...
T Consensus 756 ~~~~~~l~~~~~~l------~~--~~~~~~~sL~~L~Ls~n~~l~~lP~-si---~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 756 EMKSEKLWERVQPL------TP--LMTMLSPSLTRLFLSDIPSLVELPS-SI---QNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred ccchhhcccccccc------ch--hhhhccccchheeCCCCCCccccCh-hh---hCCCCCCEEECCCCCCcCeeCCCC-
Confidence 644322110 0000 00 0012346788888888776666543 33 677888888888888888887655
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccC
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 352 (430)
.+++|+.|++++|..+..++. ...+|++|+++++ .+++++. ....+++|+.|++.+|++|+.++..
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n-~i~~iP~--------si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRT-GIEEVPW--------WIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred CccccCEEECCCCCccccccc-----cccccCEeECCCC-CCccChH--------HHhcCCCCCEEECCCCCCcCccCcc
Confidence 678888888888887776653 1356777777664 3444431 2233777888888888888877663
Q ss_pred CcccCCCCccEEeeccCCCCcccC
Q 014145 353 NYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~~~ 376 (430)
. ..+++|+.+++.+|.+++.++
T Consensus 889 ~--~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 889 I--SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred c--ccccCCCeeecCCCccccccc
Confidence 3 346778888888887776543
|
syringae 6; Provisional |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.2e-19 Score=192.47 Aligned_cols=287 Identities=14% Similarity=0.061 Sum_probs=127.8
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
+.+++|++|++++|. +....|.. ++.+++|++|++++|.....+ |..+ ..+++|++|+++++.....+
T Consensus 137 ~~l~~L~~L~Ls~n~-~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~---------p~~~-~~l~~L~~L~L~~n~l~~~~ 204 (968)
T PLN00113 137 GSIPNLETLDLSNNM-LSGEIPND-IGSFSSLKVLDLGGNVLVGKI---------PNSL-TNLTSLEFLTLASNQLVGQI 204 (968)
T ss_pred cccCCCCEEECcCCc-ccccCChH-HhcCCCCCEEECccCcccccC---------Chhh-hhCcCCCeeeccCCCCcCcC
Confidence 345555555555542 22222322 455566666666655322222 2332 55566666666655433333
Q ss_pred cCCccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCccc-----CCCceeeec---C-c-ccccccCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLT-----SEENFFLTD---Q-I-QPLFDEKV 220 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~-----~~~~l~~~~---~-~-~~~~~~~~ 220 (430)
|.. +..+++|++|.+.+|......+ ..+|++|++++|.+.+.. .++++..++ . . ..+-....
T Consensus 205 p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 205 PRE---LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred ChH---HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh
Confidence 332 4455666666665554222222 345666666655533211 111111110 0 0 00011122
Q ss_pred CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccc
Q 014145 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 300 (430)
.+++|++|+++++ .+....+..+ ..+++|+.|++.++.....+|..+..+++|+.|++++|.-...++. .++.+
T Consensus 282 ~l~~L~~L~Ls~n-~l~~~~p~~~---~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~ 355 (968)
T PLN00113 282 SLQKLISLDLSDN-SLSGEIPELV---IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK--NLGKH 355 (968)
T ss_pred hccCcCEEECcCC-eeccCCChhH---cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh--HHhCC
Confidence 3344444444433 1211111111 3344444444444433333333344444444444444432222222 23334
Q ss_pred cccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCc
Q 014145 301 VNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVV 380 (430)
Q Consensus 301 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~ 380 (430)
++|+.|+++++.....++ .....+++|+.|++.++.--..++. ....+++|+.|++.+|.....+|..+.
T Consensus 356 ~~L~~L~Ls~n~l~~~~p--------~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~~~~L~~L~L~~n~l~~~~p~~~~ 425 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIP--------EGLCSSGNLFKLILFSNSLEGEIPK--SLGACRSLRRVRLQDNSFSGELPSEFT 425 (968)
T ss_pred CCCcEEECCCCeeEeeCC--------hhHhCcCCCCEEECcCCEecccCCH--HHhCCCCCCEEECcCCEeeeECChhHh
Confidence 444445444432211111 0111244555666655433223332 223477888888888766556776677
Q ss_pred CCCCceeeecccc
Q 014145 381 DAPKLNKVKPTEE 393 (430)
Q Consensus 381 ~~~~L~~l~l~~~ 393 (430)
.+++|+.+++.++
T Consensus 426 ~l~~L~~L~Ls~N 438 (968)
T PLN00113 426 KLPLVYFLDISNN 438 (968)
T ss_pred cCCCCCEEECcCC
Confidence 7888888888664
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-19 Score=192.32 Aligned_cols=352 Identities=14% Similarity=0.065 Sum_probs=169.5
Q ss_pred hhhcccCCCCcceeecccccCCe-eeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEe
Q 014145 43 CYEEMIGFRDIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 43 l~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 121 (430)
+|..+..+++|++|+++++. +. .++... ..+++|++|++++|. +....|.. +..+++|++|++++|.....+
T Consensus 204 ~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l----~~l~~L~~L~L~~n~-l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 204 IPRELGQMKSLKWIYLGYNN-LSGEIPYEI----GGLTSLNHLDLVYNN-LTGPIPSS-LGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CChHHcCcCCccEEECcCCc-cCCcCChhH----hcCCCCCEEECcCce-eccccChh-HhCCCCCCEEECcCCeeeccC
Confidence 45555566677777766655 32 212111 455666666666653 33223322 555666666666665322111
Q ss_pred cc------------c--ccc-cCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---
Q 014145 122 LH------------L--EEL-NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--- 183 (430)
Q Consensus 122 ~~------------~--~~~-~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--- 183 (430)
.. + ..+ ...|.. +..+++|+.|++.++.....+|.. +..+++|++|.+.+|......+
T Consensus 277 p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 277 PPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVA---LTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred chhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChh---HhcCCCCCEEECcCCCCcCcCChHH
Confidence 00 0 000 000111 134444455544444332222222 3344555555555443221222
Q ss_pred --CCCceEEEecCCCCCccc--------CCCceeeecC--cccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcc
Q 014145 184 --SNSVVHVTTDNKEPEKLT--------SEENFFLTDQ--IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA 251 (430)
Q Consensus 184 --~~~L~~L~l~~~~~~~~~--------~~~~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 251 (430)
..+|+.|++++|.+.... .++.+.+.+. ...+....+.+++|+.|+++++ .+....+..+ ..++
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~---~~l~ 428 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEF---TKLP 428 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeECChhH---hcCC
Confidence 234555555554432111 1111111100 0111112334555666666554 2322222223 4556
Q ss_pred cccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCccee
Q 014145 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVV 331 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 331 (430)
+|+.|+++++.....++.....+++|+.|++++|.....++. ....++|+.|++++|.....++ .....
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~~~L~~L~ls~n~l~~~~~--------~~~~~ 497 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD---SFGSKRLENLDLSRNQFSGAVP--------RKLGS 497 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc---ccccccceEEECcCCccCCccC--------hhhhh
Confidence 666666666544444444444566666666666654444432 1223566667776654322221 11223
Q ss_pred ecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccCCCCCcccccCchhHHHH
Q 014145 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDGDDEGCWEGNLNDTIK 411 (430)
Q Consensus 332 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~l~ 411 (430)
+++|+.|+++++.-...++. ....+++|++|++++|.....+|..+..+++|+.+++.++..-. ..........+++
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~ 574 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPD--ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG-EIPKNLGNVESLV 574 (968)
T ss_pred hhccCEEECcCCcceeeCCh--HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc-cCChhHhcCcccC
Confidence 67788888888744444543 22347889999999887766777777788999999997654221 1111112223455
Q ss_pred HHHHHhhccccC
Q 014145 412 KLFNEMNSKEKI 423 (430)
Q Consensus 412 ~~~~~~~~~~~~ 423 (430)
.+.+..+.+..-
T Consensus 575 ~l~ls~N~l~~~ 586 (968)
T PLN00113 575 QVNISHNHLHGS 586 (968)
T ss_pred EEeccCCcceee
Confidence 556666665543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-16 Score=152.01 Aligned_cols=310 Identities=16% Similarity=0.161 Sum_probs=155.4
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
...+|+|+.+++.++. ++.++... ....+|+.|++.+ |+........++.++.|++||++.| .+.++
T Consensus 98 f~nl~nLq~v~l~~N~-Lt~IP~f~----~~sghl~~L~L~~--N~I~sv~se~L~~l~alrslDLSrN-~is~i----- 164 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNE-LTRIPRFG----HESGHLEKLDLRH--NLISSVTSEELSALPALRSLDLSRN-LISEI----- 164 (873)
T ss_pred HhcCCcceeeeeccch-hhhccccc----ccccceeEEeeec--cccccccHHHHHhHhhhhhhhhhhc-hhhcc-----
Confidence 4567888888888665 77766655 5566788888887 4444444444677888888888887 46665
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcc
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKL 200 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~ 200 (430)
|...+..-.++++|++.++ .+..+ ..+...++.+|..|.+.++. ++.+| .+.|+.|++.+|.+..+
T Consensus 165 ----~~~sfp~~~ni~~L~La~N-~It~l--~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 165 ----PKPSFPAKVNIKKLNLASN-RITTL--ETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred ----cCCCCCCCCCceEEeeccc-ccccc--ccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee
Confidence 3333344456777777663 44333 22224455666666666654 55554 34566666666553321
Q ss_pred --------cCCCceeeec-Ccccccc-cCCCCCCCCEEecccC-----------------------CCceeeccCCchhh
Q 014145 201 --------TSEENFFLTD-QIQPLFD-EKVAFPQLRYLELSRL-----------------------HKVQHLWKENDESN 247 (430)
Q Consensus 201 --------~~~~~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~-----------------------~~l~~~~~~~~~~~ 247 (430)
.+++.+.+.+ +..++-+ .+..+.++++|++... +.+..+....+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W--- 313 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW--- 313 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh---
Confidence 1222222211 0111110 1122334444444431 23444444333
Q ss_pred hhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccC
Q 014145 248 KAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|+.|++++. .++.++.. +..+..|++|.++. +++.++.... +..+.+|++|++.+... .-.+ +.-+
T Consensus 314 sftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~a-f~~lssL~~LdLr~N~l-s~~I----EDaa 385 (873)
T KOG4194|consen 314 SFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGA-FVGLSSLHKLDLRSNEL-SWCI----EDAA 385 (873)
T ss_pred hhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhhH-HHHhhhhhhhcCcCCeE-EEEE----ecch
Confidence 44444444444442 33333321 22344444444444 2333333221 23344555555544321 1111 1111
Q ss_pred CcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecc
Q 014145 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPT 391 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~ 391 (430)
.....+++|++|.+.+ .+++.++.. -+..+++|++|++.+..--..-+..++++ .|++|.+.
T Consensus 386 ~~f~gl~~LrkL~l~g-Nqlk~I~kr-Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 386 VAFNGLPSLRKLRLTG-NQLKSIPKR-AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhhccchhhhheeecC-ceeeecchh-hhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 1222366677777766 366666642 23356677777776654433344445555 66666663
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-17 Score=156.16 Aligned_cols=215 Identities=16% Similarity=0.205 Sum_probs=126.7
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccc------cCCCceEEEecCCCCCcc----
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF------ISNSVVHVTTDNKEPEKL---- 200 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~------~~~~L~~L~l~~~~~~~~---- 200 (430)
|.-.+..+|+|+.|++..+ .++.+ .+. ....+++|+.|.+.++. +..+ .+..+++|+++.|.+...
T Consensus 213 p~r~Fk~L~~L~~LdLnrN-~iriv-e~l-tFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRN-RIRIV-EGL-TFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred CHHHhhhcchhhhhhcccc-ceeee-hhh-hhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhccc
Confidence 4444556666666666542 22211 010 13455566666655443 2211 145566666665553321
Q ss_pred -cCCCceeeec----Ccccc-cccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-ccc
Q 014145 201 -TSEENFFLTD----QIQPL-FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWH 273 (430)
Q Consensus 201 -~~~~~l~~~~----~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~ 273 (430)
..+++++.++ ....+ .++....++|+.|++++ +.++.+.++.+ ..+..|++|.++.. .++.+... +..
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~sf---~~L~~Le~LnLs~N-si~~l~e~af~~ 363 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEGSF---RVLSQLEELNLSHN-SIDHLAEGAFVG 363 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccc-cccccCChhHH---HHHHHhhhhccccc-chHHHHhhHHHH
Confidence 1223332211 11111 12345678999999998 58999888888 88999999999984 45555433 346
Q ss_pred CCCCCEEEEccCCC---cccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceec
Q 014145 274 LENLATLEVSKCHG---LINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFC 350 (430)
Q Consensus 274 l~~L~~L~l~~c~~---l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~ 350 (430)
+.+|++|+++...- +++. .. .+..+++|++|++.+ ++++.+... ....++.|+.|++.+. -+.++.
T Consensus 364 lssL~~LdLr~N~ls~~IEDa-a~-~f~gl~~LrkL~l~g-Nqlk~I~kr-------Afsgl~~LE~LdL~~N-aiaSIq 432 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDA-AV-AFNGLPSLRKLRLTG-NQLKSIPKR-------AFSGLEALEHLDLGDN-AIASIQ 432 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecc-hh-hhccchhhhheeecC-ceeeecchh-------hhccCcccceecCCCC-cceeec
Confidence 77888998887532 2231 22 234589999999987 467777543 2233888999999874 566666
Q ss_pred cCCcccCCCCccEEeec
Q 014145 351 LGNYALEFPSLEHVVVR 367 (430)
Q Consensus 351 ~~~~~~~~~~L~~L~l~ 367 (430)
... +..+ .|++|.+.
T Consensus 433 ~nA-Fe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 433 PNA-FEPM-ELKELVMN 447 (873)
T ss_pred ccc-cccc-hhhhhhhc
Confidence 522 2233 78888865
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-16 Score=155.40 Aligned_cols=132 Identities=23% Similarity=0.291 Sum_probs=73.8
Q ss_pred CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcc--cccCchhhc
Q 014145 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI--NVLTLSTSE 298 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~--~l~~~~~~~ 298 (430)
.+++|+.|.+++ +.++.+.... ..-.+|++|+++. +.++.+|..+..++.|+.|++.+. +++ -+|+ .++
T Consensus 243 ~l~~LrrLNLS~-N~iteL~~~~----~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPS--GIG 313 (1255)
T KOG0444|consen 243 KLRNLRRLNLSG-NKITELNMTE----GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPS--GIG 313 (1255)
T ss_pred hhhhhheeccCc-CceeeeeccH----HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccC-cccccCCcc--chh
Confidence 455667777776 3555543221 3345666777766 356667766667777777766553 233 2332 356
Q ss_pred cccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCc
Q 014145 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMK 373 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~ 373 (430)
.+.+|+.+...+. +++-++ .+..-+++|+.|.+.+ ..|..++.+... ++.|+.|+++..+++-
T Consensus 314 KL~~Levf~aanN-~LElVP--------EglcRC~kL~kL~L~~-NrLiTLPeaIHl--L~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 314 KLIQLEVFHAANN-KLELVP--------EGLCRCVKLQKLKLDH-NRLITLPEAIHL--LPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhHHHHhhcc-ccccCc--------hhhhhhHHHHHhcccc-cceeechhhhhh--cCCcceeeccCCcCcc
Confidence 6666666665542 233222 2233366666666653 455556554444 6667777777766663
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.57 E-value=8e-17 Score=156.18 Aligned_cols=324 Identities=19% Similarity=0.232 Sum_probs=187.1
Q ss_pred ceeecccccchhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCc-cCchhHHHhcCCC
Q 014145 29 LRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCLNNL 107 (430)
Q Consensus 29 ~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L 107 (430)
..+|----++.+..+|+++..+.+|++|.+.++. +..+.-.. ..+|.||.+.+.+. ++.. -+|.. +-++.-|
T Consensus 33 ~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGEL----s~Lp~LRsv~~R~N-~LKnsGiP~d-iF~l~dL 105 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGEL----SDLPRLRSVIVRDN-NLKNSGIPTD-IFRLKDL 105 (1255)
T ss_pred heeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhh----ccchhhHHHhhhcc-ccccCCCCch-hcccccc
Confidence 4555443447788899999999999999998876 65533222 56888888888876 3433 33544 4458889
Q ss_pred CEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccC---
Q 014145 108 RWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS--- 184 (430)
Q Consensus 108 ~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~--- 184 (430)
..||++.| .+.++ |.++ ..-.++-.|++++ ++++.+|... ..++..|-.|+++++. +..+||
T Consensus 106 t~lDLShN-qL~Ev---------P~~L-E~AKn~iVLNLS~-N~IetIPn~l--finLtDLLfLDLS~Nr-Le~LPPQ~R 170 (1255)
T KOG0444|consen 106 TILDLSHN-QLREV---------PTNL-EYAKNSIVLNLSY-NNIETIPNSL--FINLTDLLFLDLSNNR-LEMLPPQIR 170 (1255)
T ss_pred eeeecchh-hhhhc---------chhh-hhhcCcEEEEccc-CccccCCchH--HHhhHhHhhhccccch-hhhcCHHHH
Confidence 99999988 57776 5665 5666777788876 4666676543 3456666777777654 666663
Q ss_pred --CCceEEEecCCCCCccc-----CCCceeeec------CcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcc
Q 014145 185 --NSVVHVTTDNKEPEKLT-----SEENFFLTD------QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA 251 (430)
Q Consensus 185 --~~L~~L~l~~~~~~~~~-----~~~~l~~~~------~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 251 (430)
..|+.|.+++|++.... +++++.+++ +...+-.++..+.+|..++++. +++..++... -.++
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecl----y~l~ 245 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECL----YKLR 245 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHH----hhhh
Confidence 46777777777754422 111111110 0111112223334444444443 2333332111 3344
Q ss_pred cccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCccee
Q 014145 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVV 331 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 331 (430)
+|+.|++++. .++++......-.+|++|+++. ++++.+|. .+..++.|+.|.+.+.. +. .++.+.+...
T Consensus 246 ~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~--avcKL~kL~kLy~n~Nk-L~------FeGiPSGIGK 314 (1255)
T KOG0444|consen 246 NLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPD--AVCKLTKLTKLYANNNK-LT------FEGIPSGIGK 314 (1255)
T ss_pred hhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchH--HHhhhHHHHHHHhccCc-cc------ccCCccchhh
Confidence 4444444442 3333322222333444444444 23444443 23344555555554322 11 1233334444
Q ss_pred ecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 332 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
+..|+.+...+ .+|.-++.+ .+.|+.|+.|.+.+ ..+-++|.+.--++.|+.|+++..+
T Consensus 315 L~~Levf~aan-N~LElVPEg--lcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 315 LIQLEVFHAAN-NKLELVPEG--LCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred hhhhHHHHhhc-cccccCchh--hhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCc
Confidence 56666666665 467777764 45699999999954 5666899888788999999997644
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-15 Score=138.60 Aligned_cols=284 Identities=16% Similarity=0.178 Sum_probs=121.2
Q ss_pred CcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCc
Q 014145 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
.|+.|.+++|..........+...++++++|.+.+|..+++-- -.++...+++|++|++..|..+.......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s--------~~sla~~C~~l~~l~L~~c~~iT~~~Lk~ 210 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS--------LLSLARYCRKLRHLNLHSCSSITDVSLKY 210 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH--------HHHHHHhcchhhhhhhcccchhHHHHHHH
Confidence 3455555555444333333334455555555555554333210 01223444555555555554444332110
Q ss_pred cccccCCCccEEEeccCCCccccc-------CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEeccc
Q 014145 160 ENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 232 (430)
Q Consensus 160 ~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (430)
....+++|++++++-|+.++... ...++.+...||.-.+.-. +....+..+.+..+++..
T Consensus 211 -la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~------------l~~~~~~~~~i~~lnl~~ 277 (483)
T KOG4341|consen 211 -LAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA------------LLKAAAYCLEILKLNLQH 277 (483)
T ss_pred -HHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH------------HHHHhccChHhhccchhh
Confidence 12345555555555555444321 1223333333443221110 001122334455555555
Q ss_pred CCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCc-ccCCCCCEEEEccCCCcccccCchhhccccccceEeecc
Q 014145 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPS-WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l-~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 310 (430)
|..+++.. .+.+...+..|+.|+.++|......+ ..+ ...++|+.+.+..|..+.+.....+..+++.|+.+++.+
T Consensus 278 c~~lTD~~--~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 278 CNQLTDED--LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hccccchH--HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 54444421 22222445555555555555443221 112 244556666666665555544333344555555555555
Q ss_pred ccccchhhcccccccCCcceeecccceEeccCCCCCceecc---CCcccCCCCccEEeeccCCCCcccC-CCCcCCCCce
Q 014145 311 CKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL---GNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKLN 386 (430)
Q Consensus 311 c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~ 386 (430)
|..+.+-. .......++.|+.|.+.+|...++-.+ .........|+.+.+.+|+.++.-. .....+++|+
T Consensus 356 ~~~~~d~t------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 356 CGLITDGT------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred cceehhhh------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 54433220 001112255555555555555444311 1112234455555555555554322 1233455555
Q ss_pred eeeccc
Q 014145 387 KVKPTE 392 (430)
Q Consensus 387 ~l~l~~ 392 (430)
++++.+
T Consensus 430 ri~l~~ 435 (483)
T KOG4341|consen 430 RIELID 435 (483)
T ss_pred eeeeec
Confidence 555533
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-12 Score=129.53 Aligned_cols=254 Identities=18% Similarity=0.138 Sum_probs=148.8
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
..-..|+++++. ++.++.. ..++|+.|.+.++ +++.++. .+++|++|++++| .++.+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~~------l~~~L~~L~L~~N-~Lt~LP~-----lp~~Lk~LdLs~N-~LtsL--------- 257 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPDC------LPAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGN-QLTSL--------- 257 (788)
T ss_pred CCCcEEEcCCCC-CCcCCcc------hhcCCCEEEccCC-cCCCCCC-----CCCCCcEEEecCC-ccCcc---------
Confidence 356678888775 6654332 2357888888885 5666433 2578999999887 56665
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccCCCceee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
|. ..++|+.|++.++ .+..++. ...+|+.|.+.++. ++.++ +++|+.|++++|.+..+.
T Consensus 258 P~----lp~sL~~L~Ls~N-~L~~Lp~------lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp------- 318 (788)
T PRK15387 258 PV----LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLP------- 318 (788)
T ss_pred cC----cccccceeeccCC-chhhhhh------chhhcCEEECcCCc-cccccccccccceeECCCCccccCC-------
Confidence 32 2367888888875 4555543 23567888888764 66665 567888888888776654
Q ss_pred ecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCc
Q 014145 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 288 (430)
.....|+.|+++++ +++.++ ...++|+.|+++++ .+..+|.. ..+|+.|+++++ .+
T Consensus 319 -----------~lp~~L~~L~Ls~N-~L~~LP-------~lp~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N-~L 374 (788)
T PRK15387 319 -----------ALPSELCKLWAYNN-QLTSLP-------TLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RL 374 (788)
T ss_pred -----------CCcccccccccccC-cccccc-------ccccccceEecCCC-ccCCCCCC---Ccccceehhhcc-cc
Confidence 12235666666653 444432 12246677777663 45555432 235566666553 34
Q ss_pred ccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeecc
Q 014145 289 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 289 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
..++. ..++|+.|+++++. +..++. .+++|+.|+++++ .++.++.. ..+|+.|++++
T Consensus 375 ~~LP~-----l~~~L~~LdLs~N~-Lt~LP~-----------l~s~L~~LdLS~N-~LssIP~l-----~~~L~~L~Ls~ 431 (788)
T PRK15387 375 TSLPA-----LPSGLKELIVSGNR-LTSLPV-----------LPSELKELMVSGN-RLTSLPML-----PSGLLSLSVYR 431 (788)
T ss_pred ccCcc-----cccccceEEecCCc-ccCCCC-----------cccCCCEEEccCC-cCCCCCcc-----hhhhhhhhhcc
Confidence 44442 12356666666542 333321 1345666666664 45555421 23566666655
Q ss_pred CCCCcccCCCCcCCCCceeeeccccC
Q 014145 369 CPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 369 c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
+ +++.+|..+..+++|+.|++.+++
T Consensus 432 N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 432 N-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred C-cccccChHHhhccCCCeEECCCCC
Confidence 3 455666555556666666665543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-15 Score=135.85 Aligned_cols=310 Identities=18% Similarity=0.173 Sum_probs=214.5
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
-.|+.|.++++.....-.... ....+|+++.|.+.+|.++++..-..+.+.|++|++|++..|..++...-
T Consensus 138 g~lk~LSlrG~r~v~~sslrt--~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L------- 208 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRT--FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL------- 208 (483)
T ss_pred cccccccccccccCCcchhhH--HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH-------
Confidence 478999999988655422222 12568999999999999888765556678899999999999987766521
Q ss_pred ccCcCCcCCccceeecCCccccccccCCc-cccccCCCccEEEeccCCCccccc-------CCCceEEEecCCCCCcccC
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFT-ENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~~~~~~ 202 (430)
..+...+++|++|+++.|+.+..- +. .....+..++++...+|..+..-. ..-+..+++..|...+-
T Consensus 209 -k~la~gC~kL~~lNlSwc~qi~~~--gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD-- 283 (483)
T KOG4341|consen 209 -KYLAEGCRKLKYLNLSWCPQISGN--GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTD-- 283 (483)
T ss_pred -HHHHHhhhhHHHhhhccCchhhcC--cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccc--
Confidence 123578899999999999887651 10 013456667788777887655432 23355556556653221
Q ss_pred CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc--CCcccCCCCCEE
Q 014145 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLATL 280 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L 280 (430)
..++.....+.+|+.|+.++|..+.+.....+ ....++|+.|.+.+|..++..- ....+.+.|+.+
T Consensus 284 ----------~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 284 ----------EDLWLIACGCHALQVLCYSSCTDITDEVLWAL--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred ----------hHHHHHhhhhhHhhhhcccCCCCCchHHHHHH--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 11233345678999999999988766543333 2677999999999998766431 122378899999
Q ss_pred EEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCC
Q 014145 281 EVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPS 360 (430)
Q Consensus 281 ~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~ 360 (430)
++.+|-...+........+++.|+.|.+++|..+.+... ............|..+++.+||.+++-... ....+++
T Consensus 352 ~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi---~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~ 427 (483)
T KOG4341|consen 352 DLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI---RHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRN 427 (483)
T ss_pred cccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh---hhhhhccccccccceeeecCCCCchHHHHH-HHhhCcc
Confidence 999998777653333466899999999999988776521 111222234778999999999998875542 2335899
Q ss_pred ccEEeeccCCCCcccC--CCCcCCCCceeeec
Q 014145 361 LEHVVVRQCPTMKIFS--QGVVDAPKLNKVKP 390 (430)
Q Consensus 361 L~~L~l~~c~~l~~~~--~~~~~~~~L~~l~l 390 (430)
|+.+++.+|..+++-+ .-..++|+++....
T Consensus 428 Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 428 LERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred cceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 9999999999886533 22446777776555
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=127.51 Aligned_cols=244 Identities=17% Similarity=0.113 Sum_probs=167.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|..+. ++|+.|++.++. ++.++ . ..++|++|+++++ ++..+++. .++|++|++++|. +
T Consensus 212 ~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP------~-lp~~Lk~LdLs~N-~LtsLP~l-----p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 212 GLTTLPDCLP--AHITTLVIPDNN-LTSLP------A-LPPELRTLEVSGN-QLTSLPVL-----PPGLLELSIFSNP-L 274 (788)
T ss_pred CCCcCCcchh--cCCCEEEccCCc-CCCCC------C-CCCCCcEEEecCC-ccCcccCc-----ccccceeeccCCc-h
Confidence 3445665543 489999999865 77632 2 3589999999997 56665432 5689999999984 6
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKE 196 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~ 196 (430)
..+ |. ...+|+.|+++++ .+..+|. ..++|++|+++++. ++.++ +..|+.|.+++|.
T Consensus 275 ~~L---------p~----lp~~L~~L~Ls~N-~Lt~LP~------~p~~L~~LdLS~N~-L~~Lp~lp~~L~~L~Ls~N~ 333 (788)
T PRK15387 275 THL---------PA----LPSGLCKLWIFGN-QLTSLPV------LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQ 333 (788)
T ss_pred hhh---------hh----chhhcCEEECcCC-ccccccc------cccccceeECCCCc-cccCCCCcccccccccccCc
Confidence 555 22 2357888999885 5666643 24789999998874 66665 5678889998888
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+..+. ....+|+.|++++ ++++.++ ...++|+.|++.++ .+..+|.. ..+
T Consensus 334 L~~LP------------------~lp~~Lq~LdLS~-N~Ls~LP-------~lp~~L~~L~Ls~N-~L~~LP~l---~~~ 383 (788)
T PRK15387 334 LTSLP------------------TLPSGLQELSVSD-NQLASLP-------TLPSELYKLWAYNN-RLTSLPAL---PSG 383 (788)
T ss_pred ccccc------------------ccccccceEecCC-CccCCCC-------CCCcccceehhhcc-ccccCccc---ccc
Confidence 77654 1235789999988 4666654 23457888888774 56666643 357
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|+.|+++++ .+..+|. ..++|+.|+++++. +..++. .+.+|+.|+++++ +++.++. ...
T Consensus 384 L~~LdLs~N-~Lt~LP~-----l~s~L~~LdLS~N~-LssIP~-----------l~~~L~~L~Ls~N-qLt~LP~--sl~ 442 (788)
T PRK15387 384 LKELIVSGN-RLTSLPV-----LPSELKELMVSGNR-LTSLPM-----------LPSGLLSLSVYRN-QLTRLPE--SLI 442 (788)
T ss_pred cceEEecCC-cccCCCC-----cccCCCEEEccCCc-CCCCCc-----------chhhhhhhhhccC-cccccCh--HHh
Confidence 889999885 4666553 13578899998864 444431 1456788888874 6777765 234
Q ss_pred CCCCccEEeeccCCC
Q 014145 357 EFPSLEHVVVRQCPT 371 (430)
Q Consensus 357 ~~~~L~~L~l~~c~~ 371 (430)
.+++|+.|++.+++-
T Consensus 443 ~L~~L~~LdLs~N~L 457 (788)
T PRK15387 443 HLSSETTVNLEGNPL 457 (788)
T ss_pred hccCCCeEECCCCCC
Confidence 578889999988753
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-13 Score=126.82 Aligned_cols=310 Identities=17% Similarity=0.190 Sum_probs=181.6
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
+-+..+|.+++.+.+|..|+++.++ +..++. . ..+.-|+.+.++. +..+..|-.+..++++|.+||+.+| +
T Consensus 193 N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe-f----~gcs~L~Elh~g~--N~i~~lpae~~~~L~~l~vLDLRdN-k 263 (565)
T KOG0472|consen 193 NLLETLPPELGGLESLELLYLRRNK-IRFLPE-F----PGCSLLKELHVGE--NQIEMLPAEHLKHLNSLLVLDLRDN-K 263 (565)
T ss_pred hhhhcCChhhcchhhhHHHHhhhcc-cccCCC-C----CccHHHHHHHhcc--cHHHhhHHHHhcccccceeeecccc-c
Confidence 4566677778888888888877665 544331 1 3566777777776 4455556666778888888888887 5
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-----C------CC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----S------NS 186 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~------~~ 186 (430)
++++ |+++ ..+++|++|++++ ..+..+|.. .+++ .|+.|.+.++| ++.+- . ..
T Consensus 264 lke~---------Pde~-clLrsL~rLDlSN-N~is~Lp~s---Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 264 LKEV---------PDEI-CLLRSLERLDLSN-NDISSLPYS---LGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKY 327 (565)
T ss_pred cccC---------chHH-HHhhhhhhhcccC-CccccCCcc---cccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHH
Confidence 7777 6776 7778888888887 466667665 6677 78888887777 32211 0 01
Q ss_pred ceE----EEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeec--
Q 014145 187 VVH----VTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISE-- 260 (430)
Q Consensus 187 L~~----L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~-- 260 (430)
|+. =.++.....+.... +.-...|.+.....+.+.|++++ .+++.++.+.|.+. .-.-....+++.
T Consensus 328 Lrs~~~~dglS~se~~~e~~~------t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~-~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAM------TLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAA-KSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHhhccCCCCCCcccccccC------CCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHh-hhcceEEEecccch
Confidence 111 00111110000000 00011222233344667777776 35666666555331 112233344443
Q ss_pred ---------------------CCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhc
Q 014145 261 ---------------------CSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 261 ---------------------c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
.+.+..+|..+..+++|..|++++. -+.++|.. .+.+..|+.|+++... ...++.
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e--~~~lv~Lq~LnlS~Nr-Fr~lP~ 475 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEE--MGSLVRLQTLNLSFNR-FRMLPE 475 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchh--hhhhhhhheecccccc-cccchH
Confidence 2233334445567778888888773 46677653 4566678888887652 222210
Q ss_pred ccccccCCccee-ecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccCCC
Q 014145 320 LQVGEEAKGCVV-FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEEDG 396 (430)
Q Consensus 320 ~~~~~~~~~~~~-~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~~~ 396 (430)
+.. +..++.+-.+ -.++.+++.. +...+.+|..|++.+ ..++.+|.+...+.+|+++++.|.+..
T Consensus 476 ---------~~y~lq~lEtllas-~nqi~~vd~~-~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 ---------CLYELQTLETLLAS-NNQIGSVDPS-GLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ---------HHhhHHHHHHHHhc-cccccccChH-HhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence 000 1223333333 3467777653 345688899999976 577899999999999999999876533
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.2e-12 Score=129.81 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=131.4
Q ss_pred cCCCccEEEeccCCCccccc---CCCceEEEecCCCCCccc-------CCCceeee------------------------
Q 014145 164 EMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLT-------SEENFFLT------------------------ 209 (430)
Q Consensus 164 ~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~-------~~~~l~~~------------------------ 209 (430)
.-++|+.|...+|+-.+... |.+++.++++.+....+. +++.+...
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence 34566666666666443332 567777777766543322 23333221
Q ss_pred cCcccccccCCCCCCCCEEecccCCCceeeccCCchhh----------------------hhcccccEEEeecCCCcccc
Q 014145 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESN----------------------KAFANLIRLKISECSKLQKL 267 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~----------------------~~l~~L~~L~l~~c~~l~~l 267 (430)
++.+-+-...+.++.|++|++.. +++.+++...+.+. ..++.|+.|.+.+...-...
T Consensus 297 nel~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence 02333334456678889999887 36666654333211 33455555555554333334
Q ss_pred cCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCc
Q 014145 268 VTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLT 347 (430)
Q Consensus 268 ~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 347 (430)
...+.++.+|+.|++++. .+..+|.. ...+++.|+.|++++. +++.++. ....+++|++|...+ ..+.
T Consensus 376 ~p~l~~~~hLKVLhLsyN-rL~~fpas-~~~kle~LeeL~LSGN-kL~~Lp~--------tva~~~~L~tL~ahs-N~l~ 443 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYN-RLNSFPAS-KLRKLEELEELNLSGN-KLTTLPD--------TVANLGRLHTLRAHS-NQLL 443 (1081)
T ss_pred hhhhccccceeeeeeccc-ccccCCHH-HHhchHHhHHHhcccc-hhhhhhH--------HHHhhhhhHHHhhcC-Ccee
Confidence 445778899999999984 57777764 3678899999999984 5666652 222377888877665 3677
Q ss_pred eeccCCcccCCCCccEEeeccCCCCcccCCC-CcCCCCceeeeccccC
Q 014145 348 SFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~~~~ 394 (430)
.+|. ...+++|+.++++ |.+++.+-.. ..++|+|++++++|..
T Consensus 444 ~fPe---~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFPE---LAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred echh---hhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 7772 3457889999994 5666543322 2245899999998865
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-10 Score=119.70 Aligned_cols=244 Identities=15% Similarity=0.143 Sum_probs=146.4
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.+...|++++.. ++.++. .-.++|+.|+++++ ++..+ |..+ ..+|++|++++| .+..+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~------~Ip~~L~~L~Ls~N-~LtsL-P~~l---~~nL~~L~Ls~N-~LtsL--------- 235 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPA------CIPEQITTLILDNN-ELKSL-PENL---QGNIKTLYANSN-QLTSI--------- 235 (754)
T ss_pred cCceEEEeCCCC-cCcCCc------ccccCCcEEEecCC-CCCcC-Chhh---ccCCCEEECCCC-ccccC---------
Confidence 467888888765 665332 22357899999886 56664 3332 358999999987 46665
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCCCcee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFF 207 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~ 207 (430)
|..+ .++|+.|+++++ .+..+|.. + ..+|+.|++.++ +++.+| +.+|+.|++++|.+..+.
T Consensus 236 P~~l---~~~L~~L~Ls~N-~L~~LP~~---l--~s~L~~L~Ls~N-~L~~LP~~l~~sL~~L~Ls~N~Lt~LP------ 299 (754)
T PRK15370 236 PATL---PDTIQEMELSIN-RITELPER---L--PSALQSLDLFHN-KISCLPENLPEELRYLSVYDNSIRTLP------ 299 (754)
T ss_pred Chhh---hccccEEECcCC-ccCcCChh---H--hCCCCEEECcCC-ccCccccccCCCCcEEECCCCccccCc------
Confidence 4433 347888999886 45566543 2 247888888755 466655 457888888888766544
Q ss_pred eecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCC
Q 014145 208 LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHG 287 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~ 287 (430)
....++|+.|+++++ .++.++. ...++|+.|++.+| .+..+|..+ .++|+.|++++| .
T Consensus 300 -----------~~lp~sL~~L~Ls~N-~Lt~LP~------~l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~ 357 (754)
T PRK15370 300 -----------AHLPSGITHLNVQSN-SLTALPE------TLPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKN-Q 357 (754)
T ss_pred -----------ccchhhHHHHHhcCC-ccccCCc------cccccceeccccCC-ccccCChhh--cCcccEEECCCC-C
Confidence 112246777777764 4554432 22357777777776 355565433 257777777776 3
Q ss_pred cccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCC--cccCCCCccEEe
Q 014145 288 LINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN--YALEFPSLEHVV 365 (430)
Q Consensus 288 l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~--~~~~~~~L~~L~ 365 (430)
+..+|.. + .+.|++|++++|. +..++.. ....|+.|+++++ +++.++... ....++++..+.
T Consensus 358 L~~LP~~--l--p~~L~~LdLs~N~-Lt~LP~~----------l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 358 ITVLPET--L--PPTITTLDVSRNA-LTNLPEN----------LPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred CCcCChh--h--cCCcCEEECCCCc-CCCCCHh----------HHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEE
Confidence 5544421 1 2567777777763 4444311 1235667777664 455554311 111246667777
Q ss_pred eccCC
Q 014145 366 VRQCP 370 (430)
Q Consensus 366 l~~c~ 370 (430)
+.+.+
T Consensus 422 L~~Np 426 (754)
T PRK15370 422 VEYNP 426 (754)
T ss_pred eeCCC
Confidence 76654
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-11 Score=126.61 Aligned_cols=126 Identities=22% Similarity=0.320 Sum_probs=89.3
Q ss_pred hhcccccEEEeecCCCcccccCC-----ccc-CCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhccc
Q 014145 248 KAFANLIRLKISECSKLQKLVTP-----SWH-LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQ 321 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~-----l~~-l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~ 321 (430)
..+.+|+.|.+.+|...+....+ ... |+++..+.+.+|..++++.+ ..-.|+|+.|.+..|+.+++++...
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCHH
Confidence 67889999999998775432211 112 66788888888988888764 3345899999999999988876543
Q ss_pred cccc--CCcceeecccceE-eccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCC
Q 014145 322 VGEE--AKGCVVFEELGYL-GLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG 378 (430)
Q Consensus 322 ~~~~--~~~~~~~~~L~~L-~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 378 (430)
.... ......|+++..+ .+.+.+.+..++... ..++.|+.+.+..|++++.+|..
T Consensus 791 k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 791 KALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred HHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCccc
Confidence 1111 1123457778877 477777777777633 34677999999999999988765
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-10 Score=121.06 Aligned_cols=234 Identities=18% Similarity=0.201 Sum_probs=153.7
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+..+|..+. ++|+.|+++++. ++.++. ..+++|+.|++++| ++..+ |..+ ..+|+.|++++|. +.
T Consensus 190 LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~------~l~~nL~~L~Ls~N-~LtsL-P~~l---~~~L~~L~Ls~N~-L~ 254 (754)
T PRK15370 190 LTTIPACIP--EQITTLILDNNE-LKSLPE------NLQGNIKTLYANSN-QLTSI-PATL---PDTIQEMELSINR-IT 254 (754)
T ss_pred cCcCCcccc--cCCcEEEecCCC-CCcCCh------hhccCCCEEECCCC-ccccC-Chhh---hccccEEECcCCc-cC
Confidence 334554432 479999999875 776433 34579999999987 46664 4332 3579999999984 55
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKE 196 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~ 196 (430)
.+ |..+ ..+|+.|+++++ .+..+|.. + .++|+.|++++|. ++.++ +.+|+.|++++|.
T Consensus 255 ~L---------P~~l---~s~L~~L~Ls~N-~L~~LP~~---l--~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~ 315 (754)
T PRK15370 255 EL---------PERL---PSALQSLDLFHN-KISCLPEN---L--PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNS 315 (754)
T ss_pred cC---------ChhH---hCCCCEEECcCC-ccCccccc---c--CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCc
Confidence 65 4443 257999999864 66667543 2 2589999999874 77665 4578899999988
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+..+. ....++|+.|+++++ .++.++. ..+++|+.|+++++ .+..+|..+ .++
T Consensus 316 Lt~LP-----------------~~l~~sL~~L~Ls~N-~Lt~LP~------~l~~sL~~L~Ls~N-~L~~LP~~l--p~~ 368 (754)
T PRK15370 316 LTALP-----------------ETLPPGLKTLEAGEN-ALTSLPA------SLPPELQVLDVSKN-QITVLPETL--PPT 368 (754)
T ss_pred cccCC-----------------ccccccceeccccCC-ccccCCh------hhcCcccEEECCCC-CCCcCChhh--cCC
Confidence 77654 123468999999886 5665532 23468999999987 456666543 368
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCC
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
|+.|++++| .+..+|.. + ...|+.|+++++. +..++. ..+.-....+.+..|.+.+.+
T Consensus 369 L~~LdLs~N-~Lt~LP~~--l--~~sL~~LdLs~N~-L~~LP~----sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 369 ITTLDVSRN-ALTNLPEN--L--PAALQIMQASRNN-LVRLPE----SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred cCEEECCCC-cCCCCCHh--H--HHHHHHHhhccCC-cccCch----hHHHHhhcCCCccEEEeeCCC
Confidence 999999987 46666542 1 1368888888753 444431 111111124666777776644
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.5e-13 Score=123.23 Aligned_cols=240 Identities=17% Similarity=0.153 Sum_probs=159.0
Q ss_pred HHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcc
Q 014145 101 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME 180 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 180 (430)
+..+..|.+|.++++. +... |..+ +.+..++.++.+.. ++..+|.. +.+.++|.++.+.+.. +.
T Consensus 64 l~nL~~l~vl~~~~n~-l~~l---------p~ai-g~l~~l~~l~vs~n-~ls~lp~~---i~s~~~l~~l~~s~n~-~~ 127 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNK-LSQL---------PAAI-GELEALKSLNVSHN-KLSELPEQ---IGSLISLVKLDCSSNE-LK 127 (565)
T ss_pred hhcccceeEEEeccch-hhhC---------CHHH-HHHHHHHHhhcccc-hHhhccHH---Hhhhhhhhhhhccccc-ee
Confidence 4445555555555553 2222 3333 44455555555542 34444433 4455555555555443 33
Q ss_pred ccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccE
Q 014145 181 TFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIR 255 (430)
Q Consensus 181 ~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~ 255 (430)
.++ ...+.+++.++|.+.+.+ .+.+.+.+|..|++.+ ++++.+++.. -.++.|++
T Consensus 128 el~~~i~~~~~l~dl~~~~N~i~slp---------------~~~~~~~~l~~l~~~~-n~l~~l~~~~----i~m~~L~~ 187 (565)
T KOG0472|consen 128 ELPDSIGRLLDLEDLDATNNQISSLP---------------EDMVNLSKLSKLDLEG-NKLKALPENH----IAMKRLKH 187 (565)
T ss_pred ecCchHHHHhhhhhhhccccccccCc---------------hHHHHHHHHHHhhccc-cchhhCCHHH----HHHHHHHh
Confidence 222 234555555666555443 2345566788888887 4666665544 34889999
Q ss_pred EEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeeccc
Q 014145 256 LKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEEL 335 (430)
Q Consensus 256 L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L 335 (430)
|+... +.++++|..++.+.+|..|++.. +++..+|. +++|..|.+|+++. ..++.+++. ....++++
T Consensus 188 ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPe---f~gcs~L~Elh~g~-N~i~~lpae-------~~~~L~~l 254 (565)
T KOG0472|consen 188 LDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPE---FPGCSLLKELHVGE-NQIEMLPAE-------HLKHLNSL 254 (565)
T ss_pred cccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCC---CCccHHHHHHHhcc-cHHHhhHHH-------Hhcccccc
Confidence 98876 47889999999999999999988 46778875 67888999999976 456655532 33458899
Q ss_pred ceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 336 GYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 336 ~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
..|++++ .++++++.+.+. +.+|++|++++ ..+..+|.....+ .|+.+.+.|.+
T Consensus 255 ~vLDLRd-Nklke~Pde~cl--LrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 255 LVLDLRD-NKLKEVPDEICL--LRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred eeeeccc-cccccCchHHHH--hhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 9999998 489999986554 89999999987 4777888877666 88888887654
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.1e-11 Score=119.48 Aligned_cols=115 Identities=22% Similarity=0.309 Sum_probs=72.5
Q ss_pred ccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCccccc
Q 014145 213 QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVL 292 (430)
Q Consensus 213 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~ 292 (430)
+..|..+..+++|+-|++++ +.+.+++...+ ..+..|++|++++ +.++.+|..+..+..|++|...+ +.+..+|
T Consensus 373 d~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~---~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP 446 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSY-NRLNSFPASKL---RKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP 446 (1081)
T ss_pred ccchhhhccccceeeeeecc-cccccCCHHHH---hchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech
Confidence 34444556677777777777 35666655544 6667777777777 46777776666777777776655 3455665
Q ss_pred CchhhccccccceEeeccccccchhhcccccccCCcceee-cccceEeccCCCC
Q 014145 293 TLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPS 345 (430)
Q Consensus 293 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~ 345 (430)
. +..+++|+.+|++ |+.+.++.... ... |.|++|++++.+.
T Consensus 447 e---~~~l~qL~~lDlS-~N~L~~~~l~~--------~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 E---LAQLPQLKVLDLS-CNNLSEVTLPE--------ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred h---hhhcCcceEEecc-cchhhhhhhhh--------hCCCcccceeeccCCcc
Confidence 3 4567777788875 45555544221 112 6777777777654
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-09 Score=114.22 Aligned_cols=290 Identities=19% Similarity=0.256 Sum_probs=171.1
Q ss_pred CCCCcceeecccccC-CeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccc
Q 014145 49 GFRDIKYLQLGHFPR-LQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 127 (430)
..++|++|-+.+... +..+..+. ...+|.|++|++++|..+..+|.. ++.+.+|++|++++. .+..+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~f---f~~m~~LrVLDLs~~~~l~~LP~~--I~~Li~LryL~L~~t-~I~~L------ 610 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEF---FRSLPLLRVLDLSGNSSLSKLPSS--IGELVHLRYLDLSDT-GISHL------ 610 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHH---HhhCcceEEEECCCCCccCcCChH--HhhhhhhhcccccCC-Ccccc------
Confidence 345788887776542 22211100 145888999999998877775443 778999999999886 56666
Q ss_pred cCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC-Cccccc------CCCceEEEecCCCC---
Q 014145 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP-DMETFI------SNSVVHVTTDNKEP--- 197 (430)
Q Consensus 128 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~------~~~L~~L~l~~~~~--- 197 (430)
|.++ +++.+|.+|++..+..+..++.. ...+++|++|.+.... ...... ..+|+.+.++....
T Consensus 611 ---P~~l-~~Lk~L~~Lnl~~~~~l~~~~~i---~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~ 683 (889)
T KOG4658|consen 611 ---PSGL-GNLKKLIYLNLEVTGRLESIPGI---LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLL 683 (889)
T ss_pred ---chHH-HHHHhhheeccccccccccccch---hhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhH
Confidence 7787 88889999999888777766432 4558899999886543 111111 23444444433332
Q ss_pred CcccCCCcee-------ee-cCcccccccCCCCCCCCEEecccCCCceee--ccCCchhhhh-cccccEEEeecCCCccc
Q 014145 198 EKLTSEENFF-------LT-DQIQPLFDEKVAFPQLRYLELSRLHKVQHL--WKENDESNKA-FANLIRLKISECSKLQK 266 (430)
Q Consensus 198 ~~~~~~~~l~-------~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~~-l~~L~~L~l~~c~~l~~ 266 (430)
.......++. +. ........+.+.+.+|++|.+.+|...+.. +.+.... .. ++++..+.+.+|..+..
T Consensus 684 e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~-~~~f~~l~~~~~~~~~~~r~ 762 (889)
T KOG4658|consen 684 EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV-LLCFPNLSKVSILNCHMLRD 762 (889)
T ss_pred hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccch-hhhHHHHHHHHhhccccccc
Confidence 1111111111 00 123444456778899999999998664321 1111111 22 56777777778766665
Q ss_pred ccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEee-----------ccccccchhhcccccccCCcceeeccc
Q 014145 267 LVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKI-----------ADCKMIEQIIQLQVGEEAKGCVVFEEL 335 (430)
Q Consensus 267 l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l-----------~~c~~l~~~~~~~~~~~~~~~~~~~~L 335 (430)
+ .+....++|+.|++..|..+++..+. ...+..+..+.+ .+.+.+.++.. ....+++|
T Consensus 763 l-~~~~f~~~L~~l~l~~~~~~e~~i~~--~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~--------~~l~~~~l 831 (889)
T KOG4658|consen 763 L-TWLLFAPHLTSLSLVSCRLLEDIIPK--LKALLELKELILPFNKLEGLRMLCSLGGLPQLYW--------LPLSFLKL 831 (889)
T ss_pred c-chhhccCcccEEEEecccccccCCCH--HHHhhhcccEEecccccccceeeecCCCCceeEe--------cccCccch
Confidence 4 45567789999999999988877552 233333433222 22222222211 11224556
Q ss_pred ceEeccCCCCCceeccCCcccCCCCccEEeeccC-CCCcccCCC
Q 014145 336 GYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC-PTMKIFSQG 378 (430)
Q Consensus 336 ~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~~~ 378 (430)
+.+.+..||++..+ |.+..+.+.+| .++...|.+
T Consensus 832 ~~~~ve~~p~l~~~---------P~~~~~~i~~~~~~~~~~~~~ 866 (889)
T KOG4658|consen 832 EELIVEECPKLGKL---------PLLSTLTIVGCEEKLKEYPDG 866 (889)
T ss_pred hheehhcCcccccC---------ccccccceeccccceeecCCc
Confidence 66666666665544 56677778776 666655554
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.1e-09 Score=102.62 Aligned_cols=88 Identities=20% Similarity=0.145 Sum_probs=44.0
Q ss_pred CCCCEEecccCCCceeecc-CCchhhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccCCCcccccCc---
Q 014145 223 PQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINVLTL--- 294 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~l~~~--- 294 (430)
++|+.|++++|. ++.... ........+++|+.|++++|.... .++..+..+++|+.|++++|. +.+....
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~ 214 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALA 214 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHH
Confidence 677888887763 331100 011111344567777777764321 222223344677777777763 3221110
Q ss_pred hhhccccccceEeecccc
Q 014145 295 STSESLVNLGRMKIADCK 312 (430)
Q Consensus 295 ~~~~~l~~L~~L~l~~c~ 312 (430)
..+..+++|++|++++|+
T Consensus 215 ~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 215 ETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHhcccCCCCEEecCCCc
Confidence 123345667777777654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.4e-10 Score=91.16 Aligned_cols=83 Identities=24% Similarity=0.308 Sum_probs=54.7
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.++..|.+++. +++..+|. +..+.+|++|.+++| .++++ |.++ ..+++|+.|++. +..+...|
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppn--ia~l~nlevln~~nn-qie~l---------p~~i-ssl~klr~lnvg-mnrl~~lp 95 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPN--IAELKNLEVLNLSNN-QIEEL---------PTSI-SSLPKLRILNVG-MNRLNILP 95 (264)
T ss_pred chhhhhhhhcccC-ceeecCCc--HHHhhhhhhhhcccc-hhhhc---------Chhh-hhchhhhheecc-hhhhhcCc
Confidence 3456666667664 34443343 556777777777776 46665 5665 777777777776 45666676
Q ss_pred CCccccccCCCccEEEeccCC
Q 014145 157 NFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ .+++|.|+.|++.++.
T Consensus 96 rg---fgs~p~levldltynn 113 (264)
T KOG0617|consen 96 RG---FGSFPALEVLDLTYNN 113 (264)
T ss_pred cc---cCCCchhhhhhccccc
Confidence 66 6677888887777654
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.9e-09 Score=98.30 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=50.9
Q ss_pred CCCCCCCEEecccCCCceeeccCC-chhhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccCCCcccccCc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKEN-DESNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINVLTL 294 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~l~~~ 294 (430)
..+++|++|+++++ .++...... ......+++|+.|++++|..-. .+...+..+++|++|++++|. +.+....
T Consensus 162 ~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~ 239 (319)
T cd00116 162 RANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAA 239 (319)
T ss_pred HhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHH
Confidence 44567888888875 343211110 0011334588888888875321 233345567889999999874 4432221
Q ss_pred hhhcc----ccccceEeecccc
Q 014145 295 STSES----LVNLGRMKIADCK 312 (430)
Q Consensus 295 ~~~~~----l~~L~~L~l~~c~ 312 (430)
.+... .+.|++|++++|.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHhccCCCceEEEccCCC
Confidence 12222 2577777777664
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.5e-08 Score=94.23 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=16.8
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
.+.+|+.+.+.+|. +......+....|++++.|+++.|
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N 156 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN 156 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh
Confidence 34455555555543 222111123445555555555544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-08 Score=93.59 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=127.4
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccC--chhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
.+.+|+...+++++ +....... -...+++++.|++++ ++...+ ...++..+|+|+.|.++.|...-..
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~--~~k~~~~v~~LdLS~--NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~----- 188 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEE--YSKILPNVRDLDLSR--NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFI----- 188 (505)
T ss_pred hHHhhhheeecCcc-ccccchhh--hhhhCCcceeecchh--hhHHhHHHHHHHHHhcccchhcccccccccCCc-----
Confidence 46788888888877 55422110 124699999999998 554433 3346788999999999998543222
Q ss_pred ccCCccCcCCcCCccceeecCCccc-cccccCCccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCcc
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPK-LKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKL 200 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~ 200 (430)
.......+++|+.|.+..|.. +.++... ...||+|+.|.+.++..+.... +..|++|++++|++...
T Consensus 189 ----~s~~~~~l~~lK~L~l~~CGls~k~V~~~---~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 189 ----SSNTTLLLSHLKQLVLNSCGLSWKDVQWI---LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred ----cccchhhhhhhheEEeccCCCCHHHHHHH---HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence 111124678999999999863 3333221 5689999999999885333221 56788999999886654
Q ss_pred cCCCceeeecCcccccccCCCCCCCCEEecccCCCceeecc---CCchhhhhcccccEEEeecCCCccccc--CCcccCC
Q 014145 201 TSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK---ENDESNKAFANLIRLKISECSKLQKLV--TPSWHLE 275 (430)
Q Consensus 201 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~l~~l~ 275 (430)
.. +.-.+.++.|..|.++.+ ++.++.. ++......+++|++|++...+. ...+ ..+..++
T Consensus 262 ~~-------------~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 262 DQ-------------GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSLNHLRTLE 326 (505)
T ss_pred cc-------------ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc-ccccccchhhccc
Confidence 31 123467888888888775 4444321 1111125678888888877543 2111 2334555
Q ss_pred CCCEEEEc
Q 014145 276 NLATLEVS 283 (430)
Q Consensus 276 ~L~~L~l~ 283 (430)
+|+.|.+.
T Consensus 327 nlk~l~~~ 334 (505)
T KOG3207|consen 327 NLKHLRIT 334 (505)
T ss_pred hhhhhhcc
Confidence 66666543
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1e-08 Score=85.15 Aligned_cols=173 Identities=22% Similarity=0.194 Sum_probs=111.8
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
++.+++ +++...+..+|.+++++ +.-++... ..+.+|+.|++.+. .+.++++. ++++++|+.|.+.-| .+
T Consensus 22 sf~~~~-gLf~~s~ITrLtLSHNK-l~~vppni----a~l~nlevln~~nn-qie~lp~~--issl~klr~lnvgmn-rl 91 (264)
T KOG0617|consen 22 SFEELP-GLFNMSNITRLTLSHNK-LTVVPPNI----AELKNLEVLNLSNN-QIEELPTS--ISSLPKLRILNVGMN-RL 91 (264)
T ss_pred cHhhcc-cccchhhhhhhhcccCc-eeecCCcH----HHhhhhhhhhcccc-hhhhcChh--hhhchhhhheecchh-hh
Confidence 444444 35677888899999877 77666665 67889999999885 35554443 778999999998766 34
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ |.++ +.+|.|+.|++.+. ++.+-... +....|..|+.|.+.++. +..+|
T Consensus 92 ~~l---------prgf-gs~p~levldltyn-nl~e~~lp-gnff~m~tlralyl~dnd-fe~lp--------------- 143 (264)
T KOG0617|consen 92 NIL---------PRGF-GSFPALEVLDLTYN-NLNENSLP-GNFFYMTTLRALYLGDND-FEILP--------------- 143 (264)
T ss_pred hcC---------cccc-CCCchhhhhhcccc-ccccccCC-cchhHHHHHHHHHhcCCC-cccCC---------------
Confidence 444 6776 88999999999874 33322111 114445555555565543 33222
Q ss_pred cccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCccc
Q 014145 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~ 273 (430)
.+++.+++|+-|.++.. .+-+++.+. ..++.|++|.+.+. .++.+|..+.+
T Consensus 144 ------------------~dvg~lt~lqil~lrdn-dll~lpkei----g~lt~lrelhiqgn-rl~vlppel~~ 194 (264)
T KOG0617|consen 144 ------------------PDVGKLTNLQILSLRDN-DLLSLPKEI----GDLTRLRELHIQGN-RLTVLPPELAN 194 (264)
T ss_pred ------------------hhhhhhcceeEEeeccC-chhhCcHHH----HHHHHHHHHhcccc-eeeecChhhhh
Confidence 34567777777777773 455554443 67777888888773 56666655443
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-08 Score=92.37 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=61.8
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhh
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTS 297 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~ 297 (430)
+..+++|+.|++++ +.++.+....| .....+++|.+... .+..+... +..+..|++|++.+. +++.+.+.+ +
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~aF---e~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~a-F 342 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGAF---EGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGA-F 342 (498)
T ss_pred HhhcccceEeccCC-Cccchhhhhhh---cchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEeccc-c
Confidence 35678999999998 57888877777 77888999999884 55544332 347788999999984 577665543 4
Q ss_pred ccccccceEeecc
Q 014145 298 ESLVNLGRMKIAD 310 (430)
Q Consensus 298 ~~l~~L~~L~l~~ 310 (430)
..+..|.+|.+-.
T Consensus 343 ~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 343 QTLFSLSTLNLLS 355 (498)
T ss_pred cccceeeeeehcc
Confidence 5666777877654
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.9e-08 Score=91.75 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=53.1
Q ss_pred hccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccC
Q 014145 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 297 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 376 (430)
++.+++|++|++++. .+.++.. + ......+++.|.+.. .++..+..+ .+..+..|+.|.+.+. +++.+.
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~---~----aFe~~a~l~eL~L~~-N~l~~v~~~-~f~~ls~L~tL~L~~N-~it~~~ 338 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIED---G----AFEGAAELQELYLTR-NKLEFVSSG-MFQGLSGLKTLSLYDN-QITTVA 338 (498)
T ss_pred HhhcccceEeccCCC-ccchhhh---h----hhcchhhhhhhhcCc-chHHHHHHH-hhhccccceeeeecCC-eeEEEe
Confidence 566777777777663 4444421 1 112255666666665 355555542 2345667777777774 454444
Q ss_pred -CCCcCCCCceeeeccccCCC-CCcccc
Q 014145 377 -QGVVDAPKLNKVKPTEEEDG-DDEGCW 402 (430)
Q Consensus 377 -~~~~~~~~L~~l~l~~~~~~-~~~~~~ 402 (430)
..+.+..+|.+|.+-+.++. +.++.|
T Consensus 339 ~~aF~~~~~l~~l~l~~Np~~CnC~l~w 366 (498)
T KOG4237|consen 339 PGAFQTLFSLSTLNLLSNPFNCNCRLAW 366 (498)
T ss_pred cccccccceeeeeehccCcccCccchHH
Confidence 33566777777777554422 344444
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.6e-08 Score=98.87 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=8.9
Q ss_pred CCCCCCEEecccCCCc
Q 014145 221 AFPQLRYLELSRLHKV 236 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l 236 (430)
.++.|++|++++|..+
T Consensus 293 ~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCcccEEeeecCccc
Confidence 3455666666655544
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-06 Score=75.39 Aligned_cols=106 Identities=21% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.++++|+++++. ++.+-.-. ..+.+|+.|+++++ .+..+.. +..+++|++|++++| .++.+
T Consensus 19 ~~~~~L~L~~n~-I~~Ie~L~----~~l~~L~~L~Ls~N-~I~~l~~---l~~L~~L~~L~L~~N-~I~~i--------- 79 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIENLG----ATLDKLEVLDLSNN-QITKLEG---LPGLPRLKTLDLSNN-RISSI--------- 79 (175)
T ss_dssp ------------------S------TT-TT--EEE-TTS---S--TT-------TT--EEE--SS----S----------
T ss_pred cccccccccccc-cccccchh----hhhcCCCEEECCCC-CCccccC---ccChhhhhhcccCCC-CCCcc---------
Confidence 367888888776 55432111 24678888888886 3554332 556888888888887 45555
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
+.++...+|+|++|.+.++ .+.++..... +..+|+|+.|++.++|
T Consensus 80 ~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~-L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNN-KISDLNELEP-LSSLPKLRVLSLEGNP 124 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGG-GGG-TT--EEE-TT-G
T ss_pred ccchHHhCCcCCEEECcCC-cCCChHHhHH-HHcCCCcceeeccCCc
Confidence 2222235788888888763 4444422211 5567777777777666
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.7e-08 Score=87.57 Aligned_cols=178 Identities=20% Similarity=0.170 Sum_probs=87.9
Q ss_pred CcceeecccccCCeee-ccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 52 DIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
+|++||++... ++.- -++. ...+.+|+.|.+.+.. +.+ +...-+..-.+|+.|+++.|..+++...
T Consensus 186 Rlq~lDLS~s~-it~stl~~i---Ls~C~kLk~lSlEg~~-LdD-~I~~~iAkN~~L~~lnlsm~sG~t~n~~------- 252 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGI---LSQCSKLKNLSLEGLR-LDD-PIVNTIAKNSNLVRLNLSMCSGFTENAL------- 252 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHH---HHHHHhhhhccccccc-cCc-HHHHHHhccccceeeccccccccchhHH-------
Confidence 57888877544 4310 0000 1235666666666642 222 2222345556777777777765544311
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccc-cCCCccEEEeccCCCccccc--------CCCceEEEecCCCCCccc
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENII-EMPELRYLAIENCPDMETFI--------SNSVVHVTTDNKEPEKLT 201 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~--------~~~L~~L~l~~~~~~~~~ 201 (430)
..++..+..|.+|+++.|....+...-. +. --++|+.|++++|.+.-... ++++.+|++++|....-.
T Consensus 253 -~ll~~scs~L~~LNlsWc~l~~~~Vtv~--V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~ 329 (419)
T KOG2120|consen 253 -QLLLSSCSRLDELNLSWCFLFTEKVTVA--VAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND 329 (419)
T ss_pred -HHHHHhhhhHhhcCchHhhccchhhhHH--HhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence 2224566777777777665443331100 11 13467777777765322111 445555555555532211
Q ss_pred CCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecC
Q 014145 202 SEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
.|..+..++.|++|.++.|..+.- +.+-.....|+|.+|++.+|
T Consensus 330 -------------~~~~~~kf~~L~~lSlsRCY~i~p---~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 330 -------------CFQEFFKFNYLQHLSLSRCYDIIP---ETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -------------HHHHHHhcchheeeehhhhcCCCh---HHeeeeccCcceEEEEeccc
Confidence 223344566666666666654321 11111144556666666554
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.2e-05 Score=77.50 Aligned_cols=32 Identities=16% Similarity=0.076 Sum_probs=16.1
Q ss_pred ecccceEeccCCCCCceeccCCcccCCCCccEEeecc
Q 014145 332 FEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 332 ~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
+++|++|.+.+|..+. ++.+ . -.+|+.|.+..
T Consensus 155 PsSLk~L~Is~c~~i~-LP~~--L--P~SLk~L~ls~ 186 (426)
T PRK15386 155 SPSLKTLSLTGCSNII-LPEK--L--PESLQSITLHI 186 (426)
T ss_pred CCcccEEEecCCCccc-Cccc--c--cccCcEEEecc
Confidence 3456666666665442 2210 0 13566666654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.6e-05 Score=75.29 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=7.4
Q ss_pred CCCEEEEecCCCccEe
Q 014145 106 NLRWLEVRNCDSLEEV 121 (430)
Q Consensus 106 ~L~~L~l~~~~~l~~~ 121 (430)
+|++|.+++|..+..+
T Consensus 73 sLtsL~Lsnc~nLtsL 88 (426)
T PRK15386 73 ELTEITIENCNNLTTL 88 (426)
T ss_pred CCcEEEccCCCCcccC
Confidence 3555555554444333
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-07 Score=84.30 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=75.8
Q ss_pred hhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccc---
Q 014145 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGE--- 324 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~--- 324 (430)
..+..|+.|.+.+...-..+...+..-.+|++|+++.|.+++.....-.+.+|..|+.|+++.|....+.+.-.+..
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 44455555555553322233233334445555555555555544333334455555555555554322221100000
Q ss_pred -------------c-----CCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcc-cCCCCcCCCCc
Q 014145 325 -------------E-----AKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI-FSQGVVDAPKL 385 (430)
Q Consensus 325 -------------~-----~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~~~~~~~~~L 385 (430)
. +.-..-+|.|.+|++++|..++.-+. .....|+.|++|.++.|-.+-- --..+...|+|
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~-~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF-QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH-HHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence 0 00011277788888888887776322 2344688899999988876521 11234578899
Q ss_pred eeeecccc
Q 014145 386 NKVKPTEE 393 (430)
Q Consensus 386 ~~l~l~~~ 393 (430)
.++++.|+
T Consensus 366 ~yLdv~g~ 373 (419)
T KOG2120|consen 366 VYLDVFGC 373 (419)
T ss_pred EEEEeccc
Confidence 99999775
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.8e-06 Score=72.12 Aligned_cols=55 Identities=27% Similarity=0.394 Sum_probs=10.2
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~ 148 (430)
.+++.|++.++. +..+- ..-..+.+|++|++++| .++.+ +++ ..+++|++|++++
T Consensus 19 ~~~~~L~L~~n~-I~~Ie--~L~~~l~~L~~L~Ls~N-~I~~l----------~~l-~~L~~L~~L~L~~ 73 (175)
T PF14580_consen 19 VKLRELNLRGNQ-ISTIE--NLGATLDKLEVLDLSNN-QITKL----------EGL-PGLPRLKTLDLSN 73 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S------------TT-----TT--EEE--S
T ss_pred cccccccccccc-ccccc--chhhhhcCCCEEECCCC-CCccc----------cCc-cChhhhhhcccCC
Confidence 345666666642 22211 11113556666666665 34444 222 4455666666655
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.1e-07 Score=94.11 Aligned_cols=113 Identities=17% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC-CCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC-DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~-~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
+++|+.|.+.+|..+....-..+...+++|+.|++++| ....... .. ...+...+++|+.|++.++..+....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~--~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LL--LLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch----hH--hhhhhhhcCCcCccchhhhhccCchh
Confidence 56677777777666555332334556677777777663 1111110 00 01123445667777776665443331
Q ss_pred CCccccccCCCccEEEeccCCCccccc-------CCCceEEEecCCCC
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTTDNKEP 197 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~l~~~~~ 197 (430)
...- ...+++|++|.+.+|..+++.. ++.|++|++++|..
T Consensus 261 l~~l-~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 261 LSAL-ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHH-HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 1100 1236677777766676655443 45677777776663
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=9.8e-06 Score=56.82 Aligned_cols=59 Identities=22% Similarity=0.231 Sum_probs=30.2
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCc
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
|+|+.|++++| ++..++ .+.+.++++|++|++++| .+..+ +.+.+..+++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~-~~~f~~l~~L~~L~l~~N-~l~~i---------~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIP-PDSFSNLPNLETLDLSNN-NLTSI---------PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEEC-TTTTTTGTTESEEEETSS-SESEE---------ETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccC-HHHHcCCCCCCEeEccCC-ccCcc---------CHHHHcCCCCCCEEeCcCC
Confidence 34555555555 344432 223555566666666654 34444 3444455555555555554
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.7e-06 Score=74.53 Aligned_cols=127 Identities=18% Similarity=0.181 Sum_probs=79.8
Q ss_pred CceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcc
Q 014145 186 SVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ 265 (430)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 265 (430)
.|+++++++|.+..+. .+....|.++.|+++.+ ++..+.. + ..+++|+.|++++. .+.
T Consensus 285 ~LtelDLS~N~I~~iD---------------ESvKL~Pkir~L~lS~N-~i~~v~n--L---a~L~~L~~LDLS~N-~Ls 342 (490)
T KOG1259|consen 285 ELTELDLSGNLITQID---------------ESVKLAPKLRRLILSQN-RIRTVQN--L---AELPQLQLLDLSGN-LLA 342 (490)
T ss_pred hhhhccccccchhhhh---------------hhhhhccceeEEecccc-ceeeehh--h---hhcccceEeecccc-hhH
Confidence 4677777777776655 34556788888888874 5555432 3 67788888888873 555
Q ss_pred cccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCC
Q 014145 266 KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345 (430)
Q Consensus 266 ~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 345 (430)
++-.+-..+-|.++|.+.+. .++++. .++.+-+|++||+++. .++++-. ..+...+|.|+.+.+.+.|-
T Consensus 343 ~~~Gwh~KLGNIKtL~La~N-~iE~LS---GL~KLYSLvnLDl~~N-~Ie~lde------V~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 343 ECVGWHLKLGNIKTLKLAQN-KIETLS---GLRKLYSLVNLDLSSN-QIEELDE------VNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhhHhhhcCEeeeehhhh-hHhhhh---hhHhhhhheecccccc-chhhHHH------hcccccccHHHHHhhcCCCc
Confidence 55444446677788888773 455554 3566777888888764 3443310 01223367777777766553
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.7e-05 Score=71.93 Aligned_cols=92 Identities=11% Similarity=0.203 Sum_probs=47.6
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
+.+++|.+.+|.. ..|.+.-.....+|++..+.+..|+.-+.-. .....++.+.-|.+.. .++.+..+..-+..|+
T Consensus 173 ~~v~tlh~~~c~~--~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~ 249 (418)
T KOG2982|consen 173 TEVLTLHQLPCLE--QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFP 249 (418)
T ss_pred hhhhhhhcCCcHH--HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcc-cccccHHHHHHHcCCc
Confidence 4555555555521 1122211112556777777777765432211 1222444444455544 3455444433456778
Q ss_pred ccceEeeccccccchh
Q 014145 302 NLGRMKIADCKMIEQI 317 (430)
Q Consensus 302 ~L~~L~l~~c~~l~~~ 317 (430)
+|..|.+.+.|..+.+
T Consensus 250 ~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 250 QLVDLRVSENPLSDPL 265 (418)
T ss_pred hhheeeccCCcccccc
Confidence 8888888877765554
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00013 Score=51.06 Aligned_cols=58 Identities=28% Similarity=0.336 Sum_probs=33.1
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccC
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c 285 (430)
|+|++|+++++ +++.++...+ ..+++|+.|+++++ .+..++. .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f---~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF---SNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT---TTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH---cCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666666664 5666655555 56666666666654 3444443 3445666666666554
|
... |
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.6e-06 Score=73.84 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=41.4
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccCCCceeeecC
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQ 211 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 211 (430)
..+++|..|+++++ .+.++..+ ...+-+.++|.+..+. +.+++ ..+|..|++.+|.+.....
T Consensus 326 a~L~~L~~LDLS~N-~Ls~~~Gw---h~KLGNIKtL~La~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~lde--------- 391 (490)
T KOG1259|consen 326 AELPQLQLLDLSGN-LLAECVGW---HLKLGNIKTLKLAQNK-IETLSGLRKLYSLVNLDLSSNQIEELDE--------- 391 (490)
T ss_pred hhcccceEeecccc-hhHhhhhh---HhhhcCEeeeehhhhh-HhhhhhhHhhhhheeccccccchhhHHH---------
Confidence 44455555555542 22222111 3344555555555432 33333 3456666666666554321
Q ss_pred cccccccCCCCCCCCEEecccCC
Q 014145 212 IQPLFDEKVAFPQLRYLELSRLH 234 (430)
Q Consensus 212 ~~~~~~~~~~~~~L~~L~l~~~~ 234 (430)
..++|.+|.|+.+.+.+++
T Consensus 392 ----V~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 392 ----VNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ----hcccccccHHHHHhhcCCC
Confidence 1346778888888887754
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.45 E-value=1e-05 Score=79.35 Aligned_cols=139 Identities=22% Similarity=0.243 Sum_probs=94.2
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
+.+.++|.+...|-.|+.+.++.+. +..++... ..+..|.+|+++... .+..|.+ +-.|+ |++|.+++| +
T Consensus 85 NR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i----~~L~~lt~l~ls~Nq--lS~lp~~-lC~lp-Lkvli~sNN-k 154 (722)
T KOG0532|consen 85 NRFSELPEEACAFVSLESLILYHNC-IRTIPEAI----CNLEALTFLDLSSNQ--LSHLPDG-LCDLP-LKVLIVSNN-K 154 (722)
T ss_pred cccccCchHHHHHHHHHHHHHHhcc-ceecchhh----hhhhHHHHhhhccch--hhcCChh-hhcCc-ceeEEEecC-c
Confidence 5678899999999999999998766 55444444 677888888888753 3334544 33455 999999987 5
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEec
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTD 193 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~ 193 (430)
++.+ |+++ +..+.|..|+.++| .+..++.. +..+.+|+.|++.++. +..++ ...|..|+++
T Consensus 155 l~~l---------p~~i-g~~~tl~~ld~s~n-ei~slpsq---l~~l~slr~l~vrRn~-l~~lp~El~~LpLi~lDfS 219 (722)
T KOG0532|consen 155 LTSL---------PEEI-GLLPTLAHLDVSKN-EIQSLPSQ---LGYLTSLRDLNVRRNH-LEDLPEELCSLPLIRLDFS 219 (722)
T ss_pred cccC---------Cccc-ccchhHHHhhhhhh-hhhhchHH---hhhHHHHHHHHHhhhh-hhhCCHHHhCCceeeeecc
Confidence 7776 6777 57888888888875 55556554 6677777777777665 43333 2244555555
Q ss_pred CCCCCccc
Q 014145 194 NKEPEKLT 201 (430)
Q Consensus 194 ~~~~~~~~ 201 (430)
.|.+..+.
T Consensus 220 cNkis~iP 227 (722)
T KOG0532|consen 220 CNKISYLP 227 (722)
T ss_pred cCceeecc
Confidence 55554443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00011 Score=76.84 Aligned_cols=112 Identities=17% Similarity=0.297 Sum_probs=65.1
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
=.+|++|++++...+..-|... . ...+|.|+.|.+.+-. +....-....+++|||..||||++ .++.+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~k-i-g~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-------- 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKK-I-GTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGT-NISNL-------- 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHH-H-hhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCC-CccCc--------
Confidence 3578888887765555545333 1 1357888888887742 211111224567888888888876 45554
Q ss_pred CccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCC
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPD 178 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 178 (430)
.|+ ..+.+|+.|.+.+..-.. ...... +.++.+|+.|+++.-..
T Consensus 189 --~GI-S~LknLq~L~mrnLe~e~-~~~l~~-LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 189 --SGI-SRLKNLQVLSMRNLEFES-YQDLID-LFNLKKLRVLDISRDKN 232 (699)
T ss_pred --HHH-hccccHHHHhccCCCCCc-hhhHHH-HhcccCCCeeecccccc
Confidence 343 667777777777653221 111111 55677777777776543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00025 Score=69.87 Aligned_cols=174 Identities=22% Similarity=0.262 Sum_probs=111.2
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcC-CCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
.++.++.|.+.+. .+.++.+. ...+. +|+.|+++++ .+..+ |..+ ..++.|+.|+++++ .+..+
T Consensus 114 ~~~~l~~L~l~~n-~i~~i~~~--~~~~~~nL~~L~l~~N-~i~~l---------~~~~-~~l~~L~~L~l~~N-~l~~l 178 (394)
T COG4886 114 ELTNLTSLDLDNN-NITDIPPL--IGLLKSNLKELDLSDN-KIESL---------PSPL-RNLPNLKNLDLSFN-DLSDL 178 (394)
T ss_pred cccceeEEecCCc-ccccCccc--cccchhhccccccccc-chhhh---------hhhh-hccccccccccCCc-hhhhh
Confidence 4567888887765 45555544 33342 7888888887 35444 2233 77888888888885 55556
Q ss_pred cCCccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEec
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLEL 230 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 230 (430)
+.. ....++|+.|.++++. ++.++ +..|+.+.++++....+. .....+.++..+.+
T Consensus 179 ~~~---~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~---------------~~~~~~~~l~~l~l 239 (394)
T COG4886 179 PKL---LSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELL---------------SSLSNLKNLSGLEL 239 (394)
T ss_pred hhh---hhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecc---------------hhhhhccccccccc
Confidence 543 3377888888888865 66665 335888888888533322 12345566666665
Q ss_pred ccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccc
Q 014145 231 SRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINV 291 (430)
Q Consensus 231 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l 291 (430)
.+. .+..+ .... ..+++++.|+++++ .+..++. +..+.+++.|++++.......
T Consensus 240 ~~n-~~~~~-~~~~---~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 240 SNN-KLEDL-PESI---GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCc-eeeec-cchh---ccccccceeccccc-ccccccc-ccccCccCEEeccCccccccc
Confidence 543 33332 2222 66778999988885 5566654 678888999999886544433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00033 Score=69.06 Aligned_cols=172 Identities=23% Similarity=0.314 Sum_probs=122.1
Q ss_pred HHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCC-ccceeecCCccccccccCCccccccCCCccEEEeccCCCc
Q 014145 101 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFP-KLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 179 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 179 (430)
+..+.++..|++.++ .+..+ +... ..+. +|+.|++++. .+..++.. +..+++|+.|.+.+++ +
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i---------~~~~-~~~~~nL~~L~l~~N-~i~~l~~~---~~~l~~L~~L~l~~N~-l 175 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDI---------PPLI-GLLKSNLKELDLSDN-KIESLPSP---LRNLPNLKNLDLSFND-L 175 (394)
T ss_pred hhcccceeEEecCCc-ccccC---------cccc-ccchhhccccccccc-chhhhhhh---hhccccccccccCCch-h
Confidence 345678999999887 46565 3332 5553 8999999984 66666433 7899999999999987 6
Q ss_pred cccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhccccc
Q 014145 180 ETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI 254 (430)
Q Consensus 180 ~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 254 (430)
+.++ .+.++.++++++.+..+.. .......|++|.+++...++.. ... ..++++.
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~---------------~~~~~~~L~~l~~~~N~~~~~~--~~~---~~~~~l~ 235 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPP---------------EIELLSALEELDLSNNSIIELL--SSL---SNLKNLS 235 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCch---------------hhhhhhhhhhhhhcCCcceecc--hhh---hhccccc
Confidence 6655 4679999999999887661 1134556999999985423332 222 6667777
Q ss_pred EEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 255 RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 255 ~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.+.+.+ ..+..++..+..+++++.|+++++ .+.++.. .+.+..++.|++++...
T Consensus 236 ~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 236 GLELSN-NKLEDLPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred ccccCC-ceeeeccchhccccccceeccccc-ccccccc---ccccCccCEEeccCccc
Confidence 777544 344454666778889999999985 5666654 67788999999987543
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00031 Score=73.38 Aligned_cols=86 Identities=20% Similarity=0.295 Sum_probs=52.2
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
-.+|++|+++|-..+..-++..+..-+|+|+.|.+++-..... ++ ..+..+||+|..|+++++ ++..+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-----dF----~~lc~sFpNL~sLDIS~T-nI~nl~- 189 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-----DF----SQLCASFPNLRSLDISGT-NISNLS- 189 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-----hH----HHHhhccCccceeecCCC-CccCcH-
Confidence 3578888887765555555555566678888888876321111 00 112457788888888875 344341
Q ss_pred CccccccCCCccEEEeccCC
Q 014145 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~ 177 (430)
+ +..+++|+.|.+.+..
T Consensus 190 G---IS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 190 G---ISRLKNLQVLSMRNLE 206 (699)
T ss_pred H---HhccccHHHHhccCCC
Confidence 2 6677777777776654
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00024 Score=66.01 Aligned_cols=242 Identities=16% Similarity=0.069 Sum_probs=115.4
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeee--ccCCCCCCCCCCCcceEEEeCCCCCCcc----Cchh------HHHhcCC
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEI--WHGQALPVSFFNNLRHLVVDDCTNMLSA----IPAN------LIRCLNN 106 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~----~~~~------~~~~l~~ 106 (430)
..+.+...+-++..++.++++++.--..- |.+..+ .+-++|+.-++++. ++.. .|.. .+..+++
T Consensus 18 d~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L--~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 18 DEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVL--ASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred hhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHH--hhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCc
Confidence 34556666778899999999987621110 111101 33457777777762 2221 1221 2446789
Q ss_pred CCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccc-cCC
Q 014145 107 LRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF-ISN 185 (430)
Q Consensus 107 L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~-~~~ 185 (430)
|++|++|+|-. +.- ++..+ ..++..+..|++|.+.+|.. ....... ++ ..|..|. ..+-. .++
T Consensus 94 L~~ldLSDNA~-G~~----g~~~l-~~ll~s~~~L~eL~L~N~Gl-g~~ag~~--l~--~al~~l~-----~~kk~~~~~ 157 (382)
T KOG1909|consen 94 LQKLDLSDNAF-GPK----GIRGL-EELLSSCTDLEELYLNNCGL-GPEAGGR--LG--RALFELA-----VNKKAASKP 157 (382)
T ss_pred eeEeecccccc-Ccc----chHHH-HHHHHhccCHHHHhhhcCCC-ChhHHHH--HH--HHHHHHH-----HHhccCCCc
Confidence 99999999842 211 11111 11235577888888888743 2111000 00 0011111 00000 133
Q ss_pred CceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeecc-CCchhhhhcccccEEEeecCCCc
Q 014145 186 SVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKL 264 (430)
Q Consensus 186 ~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l 264 (430)
.|+.+...+|....-.. + .+... +...+.|+.+.+... .+..-.. ........+++|+.|++.+...-
T Consensus 158 ~Lrv~i~~rNrlen~ga-~------~~A~~---~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGA-T------ALAEA---FQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred ceEEEEeeccccccccH-H------HHHHH---HHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 44444444444322110 0 00111 123356666666553 2211000 00111166778888887764221
Q ss_pred c----cccCCcccCCCCCEEEEccCCCcccccC----chhhccccccceEeecccc
Q 014145 265 Q----KLVTPSWHLENLATLEVSKCHGLINVLT----LSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 265 ~----~l~~~l~~l~~L~~L~l~~c~~l~~l~~----~~~~~~l~~L~~L~l~~c~ 312 (430)
. .+...+..+++|+.+++++|. +++-.. .++..+.|.|+.|.+.+|.
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch
Confidence 1 222345566778888888884 332211 1123456788888887764
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0039 Score=65.14 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=55.7
Q ss_pred cceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCcc
Q 014145 81 LRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTE 160 (430)
Q Consensus 81 L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~ 160 (430)
++.|+++++ .+....|.. +..+++|+.|++++|..-+.+ |..+ ..+++|+.|+++++.....+|..
T Consensus 420 v~~L~L~~n-~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~i---------P~~~-~~l~~L~~LdLs~N~lsg~iP~~-- 485 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPND-ISKLRHLQSINLSGNSIRGNI---------PPSL-GSITSLEVLDLSYNSFNGSIPES-- 485 (623)
T ss_pred EEEEECCCC-CccccCCHH-HhCCCCCCEEECCCCcccCcC---------ChHH-hCCCCCCEEECCCCCCCCCCchH--
Confidence 677777776 344444444 677888888888887533344 4444 77888888888886554555544
Q ss_pred ccccCCCccEEEeccCC
Q 014145 161 NIIEMPELRYLAIENCP 177 (430)
Q Consensus 161 ~~~~~~~L~~L~l~~c~ 177 (430)
+..+++|+.|++.++.
T Consensus 486 -l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 486 -LGQLTSLRILNLNGNS 501 (623)
T ss_pred -HhcCCCCCEEECcCCc
Confidence 6678888888887765
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0029 Score=66.07 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=77.8
Q ss_pred CcceeecccccCCee-eccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 52 DIKYLQLGHFPRLQE-IWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.++.|+|+++. +.. ++... ..+++|+.|+++++. +....|.. +..+++|+.|++++|..-..+
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i----~~L~~L~~L~Ls~N~-l~g~iP~~-~~~l~~L~~LdLs~N~lsg~i--------- 482 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDI----SKLRHLQSINLSGNS-IRGNIPPS-LGSITSLEVLDLSYNSFNGSI--------- 482 (623)
T ss_pred EEEEEECCCCC-ccccCCHHH----hCCCCCCEEECCCCc-ccCcCChH-HhCCCCCCEEECCCCCCCCCC---------
Confidence 47888888776 543 22222 578999999999974 55444544 788999999999999544444
Q ss_pred ccCcCCcCCccceeecCCccccccccCCcccccc-CCCccEEEeccCCCccc
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIE-MPELRYLAIENCPDMET 181 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~-~~~L~~L~l~~c~~l~~ 181 (430)
|..+ ..+++|+.|+++++.....+|.. +.. ..++..+.+.+++.+-.
T Consensus 483 P~~l-~~L~~L~~L~Ls~N~l~g~iP~~---l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 483 PESL-GQLTSLRILNLNGNSLSGRVPAA---LGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred chHH-hcCCCCCEEECcCCcccccCChH---HhhccccCceEEecCCccccC
Confidence 4554 88999999999998766667654 333 34677888887765543
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=5.2e-05 Score=76.58 Aligned_cols=86 Identities=22% Similarity=0.157 Sum_probs=48.0
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhc
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 298 (430)
+..++.|++|||++ +.++.++.-.. .. ..|+.|.+++. .++++ .++.++.+|+.|+++.+ -+........+.
T Consensus 205 Lr~l~~LkhLDlsy-N~L~~vp~l~~---~g-c~L~~L~lrnN-~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLw 276 (1096)
T KOG1859|consen 205 LRRLPKLKHLDLSY-NCLRHVPQLSM---VG-CKLQLLNLRNN-ALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLW 276 (1096)
T ss_pred HHhccccccccccc-chhccccccch---hh-hhheeeeeccc-HHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHH
Confidence 45567777777776 35555532221 22 23777777763 45555 34557777777777753 222222222344
Q ss_pred cccccceEeecccc
Q 014145 299 SLVNLGRMKIADCK 312 (430)
Q Consensus 299 ~l~~L~~L~l~~c~ 312 (430)
.+..|..|++.++|
T Consensus 277 sLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 277 SLSSLIVLWLEGNP 290 (1096)
T ss_pred HHHHHHHHhhcCCc
Confidence 55667777776654
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.00082 Score=61.28 Aligned_cols=92 Identities=15% Similarity=0.110 Sum_probs=44.7
Q ss_pred ccccEEEeecCCCccc--ccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCc
Q 014145 251 ANLIRLKISECSKLQK--LVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG 328 (430)
Q Consensus 251 ~~L~~L~l~~c~~l~~--l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 328 (430)
+.+++|.+.+|..... .-.....||++..+.+..|+ +++..+......+|.+.-|.+.. .++..+..- +.
T Consensus 173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasv------D~ 244 (418)
T KOG2982|consen 173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASV------DA 244 (418)
T ss_pred hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHH------HH
Confidence 4556666666543221 11112356677777776664 44444433344555555555543 233332211 11
Q ss_pred ceeecccceEeccCCCCCceec
Q 014145 329 CVVFEELGYLGLDCLPSLTSFC 350 (430)
Q Consensus 329 ~~~~~~L~~L~l~~c~~L~~~~ 350 (430)
...|+.|..|.+.+.|-...+.
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred HcCCchhheeeccCCccccccc
Confidence 1226666666666666554443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=7.3e-05 Score=75.53 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=61.2
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---C--CCceEEEecCCCCCcccCCCceeeec
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---S--NSVVHVTTDNKEPEKLTSEENFFLTD 210 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~--~~L~~L~l~~~~~~~~~~~~~l~~~~ 210 (430)
..++.|+.|+++.+ ++..... +..++.|++|++.++. ++.++ + ..|+.|.+.+|.+.+.-
T Consensus 184 qll~ale~LnLshN-k~~~v~~----Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l~tL~--------- 248 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTKVDN----LRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNALTTLR--------- 248 (1096)
T ss_pred HHHHHhhhhccchh-hhhhhHH----HHhcccccccccccch-hccccccchhhhhheeeeecccHHHhhh---------
Confidence 56678888888874 3433332 6678888888887654 44443 1 24777788777766543
Q ss_pred CcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCC
Q 014145 211 QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS 262 (430)
Q Consensus 211 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 262 (430)
.+..+.+|+.||++++ -+... .+.. ....+..|+.|.+.+.+
T Consensus 249 -------gie~LksL~~LDlsyN-ll~~h-seL~-pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 249 -------GIENLKSLYGLDLSYN-LLSEH-SELE-PLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -------hHHhhhhhhccchhHh-hhhcc-hhhh-HHHHHHHHHHHhhcCCc
Confidence 3456677788887763 22221 1111 11456677777777654
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0058 Score=39.41 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEe
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEV 121 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 121 (430)
++|++|+++++ ++.++++. +.+|++|++|++++| .+.++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~--l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPE--LSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGH--GTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCch--HhCCCCCCEEEecCC-CCCCC
Confidence 45677777766 45554332 556777777777776 34443
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.00099 Score=66.14 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=59.4
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+.+|+.|++.+. .+..+... +.++++|++|++++| .++.+ .++ ..++.|+.|++.++ .+..+
T Consensus 92 ~~~~~l~~l~l~~n-~i~~i~~~--l~~~~~L~~L~ls~N-~I~~i----------~~l-~~l~~L~~L~l~~N-~i~~~ 155 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KIEKIENL--LSSLVNLQVLDLSFN-KITKL----------EGL-STLTLLKELNLSGN-LISDI 155 (414)
T ss_pred ccccceeeeecccc-chhhcccc--hhhhhcchheecccc-ccccc----------cch-hhccchhhheeccC-cchhc
Confidence 45677777777764 33333221 446777888888877 45555 333 55666777777774 34434
Q ss_pred cCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcc
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKL 200 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~ 200 (430)
.. ...+++|+.+.+.++. ++.+. ...++.+.+.++.+..+
T Consensus 156 ~~----~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 156 SG----LESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred cC----CccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhcc
Confidence 22 3346677777776665 32222 23455556666665443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.00091 Score=66.09 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=45.2
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|..+..+..|.+++|+.+. +...+.+. .+--|+.|.+++. +++.++.. ++..+.|..||.+.|. +
T Consensus 109 ~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~l-----C~lpLkvli~sNN-kl~~lp~~--ig~~~tl~~ld~s~ne-i 178 (722)
T KOG0532|consen 109 CIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGL-----CDLPLKVLIVSNN-KLTSLPEE--IGLLPTLAHLDVSKNE-I 178 (722)
T ss_pred cceecchhhhhhhHHHHhhhccch-hhcCChhh-----hcCcceeEEEecC-ccccCCcc--cccchhHHHhhhhhhh-h
Confidence 455566667777788888887655 55433333 2345777777765 45554433 4467778888887773 4
Q ss_pred cEe
Q 014145 119 EEV 121 (430)
Q Consensus 119 ~~~ 121 (430)
..+
T Consensus 179 ~sl 181 (722)
T KOG0532|consen 179 QSL 181 (722)
T ss_pred hhc
Confidence 444
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.022 Score=49.37 Aligned_cols=84 Identities=17% Similarity=0.333 Sum_probs=52.9
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
..+...+++++.. +..+. .+.++++|.+|.+.+| .+..+ .+.+...+|+|.+|.+.++ ++.++..
T Consensus 41 ~d~~d~iDLtdNd-l~~l~---~lp~l~rL~tLll~nN-rIt~I---------~p~L~~~~p~l~~L~LtnN-si~~l~d 105 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-LRKLD---NLPHLPRLHTLLLNNN-RITRI---------DPDLDTFLPNLKTLILTNN-SIQELGD 105 (233)
T ss_pred ccccceecccccc-hhhcc---cCCCccccceEEecCC-cceee---------ccchhhhccccceEEecCc-chhhhhh
Confidence 4456677777652 32221 1456888888888887 46666 4555567788888888873 4444432
Q ss_pred CccccccCCCccEEEeccCC
Q 014145 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~ 177 (430)
... ...+|.|++|.+-+++
T Consensus 106 l~p-La~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 106 LDP-LASCPKLEYLTLLGNP 124 (233)
T ss_pred cch-hccCCccceeeecCCc
Confidence 222 5677777777776665
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.022 Score=36.70 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=16.4
Q ss_pred cccEEEeecCCCcccccCCcccCCCCCEEEEccC
Q 014145 252 NLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 285 (430)
+|++|+++++ .++.+|..+..+++|+.|+++++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence 4555555553 34445444555555555555554
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.0088 Score=59.38 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=77.5
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+++.-..+..|.+|+.|++.+.. ++.+.... ..+++|++|++++. .+..+.+ +..+..|+.|++++| .+.
T Consensus 84 i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l----~~~~~L~~L~ls~N-~I~~i~~---l~~l~~L~~L~l~~N-~i~ 153 (414)
T KOG0531|consen 84 IAKILNHLSKLKSLEALDLYDNK-IEKIENLL----SSLVNLQVLDLSFN-KITKLEG---LSTLTLLKELNLSGN-LIS 153 (414)
T ss_pred hhhhhcccccccceeeeeccccc-hhhcccch----hhhhcchheecccc-ccccccc---hhhccchhhheeccC-cch
Confidence 44434447789999999999877 77643212 57999999999985 4555444 446788999999998 466
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ .++ ..++.|+.+++.++. +..+... . ...+.+++.+.+.++.
T Consensus 154 ~~----------~~~-~~l~~L~~l~l~~n~-i~~ie~~-~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 154 DI----------SGL-ESLKSLKLLDLSYNR-IVDIEND-E-LSELISLEELDLGGNS 197 (414)
T ss_pred hc----------cCC-ccchhhhcccCCcch-hhhhhhh-h-hhhccchHHHhccCCc
Confidence 65 232 457888899998853 3333220 0 2567778888877765
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.0043 Score=57.85 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=86.7
Q ss_pred CCCCCCCEEecccCCCceeeccCCch-hhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccCCCcccccCc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINVLTL 294 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~l~~~ 294 (430)
+.-+.|+.+...++ .+.+.....++ .....+.|+.+.+.+...-. -+...+..+++|+.|+++++. ++.-...
T Consensus 154 ~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~ 231 (382)
T KOG1909|consen 154 ASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSV 231 (382)
T ss_pred CCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHH
Confidence 45679999998874 55553222211 12566899999998754432 122345689999999999864 3222111
Q ss_pred h---hhccccccceEeeccccccchhhcccccccCC-cceeecccceEeccCCCCCceec--cCCcccCCCCccEEeecc
Q 014145 295 S---TSESLVNLGRMKIADCKMIEQIIQLQVGEEAK-GCVVFEELGYLGLDCLPSLTSFC--LGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 295 ~---~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~L~~~~--~~~~~~~~~~L~~L~l~~ 368 (430)
. ....+++|+.|++++|.. +.-... .+.. -...+|+|+.|.+.++.-=++-. ........|.|++|++.+
T Consensus 232 ~LakaL~s~~~L~El~l~dcll-~~~Ga~---a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 232 ALAKALSSWPHLRELNLGDCLL-ENEGAI---AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHhcccchheeeccccccc-ccccHH---HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 1 245678899999999953 211000 0000 01228999999999874311100 000112368999999999
Q ss_pred CCC
Q 014145 369 CPT 371 (430)
Q Consensus 369 c~~ 371 (430)
|..
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 855
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.092 Score=45.60 Aligned_cols=109 Identities=23% Similarity=0.293 Sum_probs=66.6
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCc
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 131 (430)
....++++++. +..+ .....+++|..|.+++. .++.+.|. +..-+++|+.|.+++| ++..++++
T Consensus 43 ~~d~iDLtdNd-l~~l-----~~lp~l~rL~tLll~nN-rIt~I~p~-L~~~~p~l~~L~LtnN-si~~l~dl------- 106 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKL-----DNLPHLPRLHTLLLNNN-RITRIDPD-LDTFLPNLKTLILTNN-SIQELGDL------- 106 (233)
T ss_pred ccceecccccc-hhhc-----ccCCCccccceEEecCC-cceeeccc-hhhhccccceEEecCc-chhhhhhc-------
Confidence 45566666655 3221 11145778888888875 45554443 3556788999999998 56555331
Q ss_pred cCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 132 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
..+ ..+|+|++|.+-+.+.-..--.-..-+..+|+|+.|++..-.
T Consensus 107 ~pL-a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 107 DPL-ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chh-ccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 233 678999999987754322110011115678888888887543
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.0052 Score=53.08 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=28.8
Q ss_pred ccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCC
Q 014145 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~ 370 (430)
..++.++.|.+.+|..+.+.....+. ..+++|+.|++++|+.+++.... ....+++|+.|.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~------~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLG------GLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhc------ccccchheeeccCCCeechhHHH-HHHHhhhhHHHHhcCch
Confidence 34444555555555544444322111 12455555555555555544321 12234555555554443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.0012 Score=59.67 Aligned_cols=85 Identities=15% Similarity=0.112 Sum_probs=62.9
Q ss_pred CCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
+.+.+.|++.+| ++.++... ..++.|+.|.++-. .+.++ ..+..|++|++|+++.+ .+.++....++.++|
T Consensus 18 l~~vkKLNcwg~-~L~DIsic-----~kMp~lEVLsLSvN-kIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISIC-----EKMPLLEVLSLSVN-KISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCC-CccHHHHH-----HhcccceeEEeecc-ccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCc
Confidence 457788888886 56665322 77899999999874 45555 34668889999999873 577776666788999
Q ss_pred ccceEeeccccccc
Q 014145 302 NLGRMKIADCKMIE 315 (430)
Q Consensus 302 ~L~~L~l~~c~~l~ 315 (430)
+|+.|+|..++..+
T Consensus 89 sLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 89 SLRTLWLDENPCCG 102 (388)
T ss_pred hhhhHhhccCCccc
Confidence 99999998876544
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.0063 Score=52.56 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=19.3
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccch
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
.++.++.|.+.+|..+.+--.....+-.++|+.|+|+.|+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 34444444445554444332222222334555555555554443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.033 Score=50.09 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=17.9
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
..+|+|++++++++. ++.+.. ......+++|..|.+.+|+
T Consensus 88 e~~P~l~~l~ls~Nk-i~~lst-l~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 88 EKAPNLKVLNLSGNK-IKDLST-LRPLKELENLKSLDLFNCS 127 (260)
T ss_pred hhCCceeEEeecCCc-cccccc-cchhhhhcchhhhhcccCC
Confidence 344566666655532 221111 0114455555566665555
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.012 Score=53.39 Aligned_cols=83 Identities=23% Similarity=0.203 Sum_probs=48.6
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
+.+.+.|+..+|. +.++..+. .|+.|+.|.++-. ++.++.| +..|.+|++|.+..|. +.++ +++..
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~-----kMp~lEVLsLSvN-kIssL~p---l~rCtrLkElYLRkN~-I~sl---dEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICE-----KMPLLEVLSLSVN-KISSLAP---LQRCTRLKELYLRKNC-IESL---DELEY 83 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHH-----hcccceeEEeecc-ccccchh---HHHHHHHHHHHHHhcc-cccH---HHHHH
Confidence 4466677777665 66543333 6777777777764 3444333 4567777777777662 3322 22222
Q ss_pred CccCcCCcCCccceeecCCccc
Q 014145 130 DKEHIGPLFPKLFELTLMDLPK 151 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~ 151 (430)
+ .++|+|+.|.|..++.
T Consensus 84 L-----knlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 84 L-----KNLPSLRTLWLDENPC 100 (388)
T ss_pred H-----hcCchhhhHhhccCCc
Confidence 2 5667777777766443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.099 Score=47.12 Aligned_cols=89 Identities=26% Similarity=0.170 Sum_probs=41.1
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCC--cccccCCcccCCCCCEEEEccCCCcccccC--c
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK--LQKLVTPSWHLENLATLEVSKCHGLINVLT--L 294 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~--l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~--~ 294 (430)
.-.+|+|++|.++..+.-........ ...+|+|+.|.+++... +.++ ..+..+.+|..|++.+|.... +.. .
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl--~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~-l~dyre 136 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVL--AEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTN-LDDYRE 136 (260)
T ss_pred CCCcchhhhhcccCCcccccccceeh--hhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccc-cccHHH
Confidence 34456666666665311111111111 13446777777666422 1222 224455666666666664332 111 1
Q ss_pred hhhccccccceEeeccc
Q 014145 295 STSESLVNLGRMKIADC 311 (430)
Q Consensus 295 ~~~~~l~~L~~L~l~~c 311 (430)
.++.-+++|.+|+-.++
T Consensus 137 ~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDGCDV 153 (260)
T ss_pred HHHHHhhhhcccccccc
Confidence 12344566666665544
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=91.17 E-value=1 Score=36.15 Aligned_cols=10 Identities=10% Similarity=0.089 Sum_probs=3.0
Q ss_pred cCCccceeec
Q 014145 137 LFPKLFELTL 146 (430)
Q Consensus 137 ~l~~L~~L~l 146 (430)
.+++|+.+.+
T Consensus 33 ~~~~l~~i~~ 42 (129)
T PF13306_consen 33 NCTSLKSINF 42 (129)
T ss_dssp T-TT-SEEEE
T ss_pred cccccccccc
Confidence 3333333333
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.9 Score=34.52 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=5.9
Q ss_pred HHhcCCCCEEEEec
Q 014145 101 IRCLNNLRWLEVRN 114 (430)
Q Consensus 101 ~~~l~~L~~L~l~~ 114 (430)
+.++.+|+.+.+.+
T Consensus 31 F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 31 FSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT-SEEEESS
T ss_pred cccccccccccccc
Confidence 44454555555543
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.31 Score=24.23 Aligned_cols=15 Identities=7% Similarity=0.149 Sum_probs=6.7
Q ss_pred CccEEeeccCCCCccc
Q 014145 360 SLEHVVVRQCPTMKIF 375 (430)
Q Consensus 360 ~L~~L~l~~c~~l~~~ 375 (430)
+|+.|++++|. ++.+
T Consensus 2 ~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSL 16 (17)
T ss_dssp T-SEEEETSS---SSE
T ss_pred ccCEEECCCCC-CCCC
Confidence 45666666654 4444
|
... |
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.00 E-value=0.11 Score=47.12 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=78.3
Q ss_pred cccCCCccEEEeccCCCccccc---------CCCceEEEecCCCCCccc------CCCceeeecCcccccccCCCCCCCC
Q 014145 162 IIEMPELRYLAIENCPDMETFI---------SNSVVHVTTDNKEPEKLT------SEENFFLTDQIQPLFDEKVAFPQLR 226 (430)
Q Consensus 162 ~~~~~~L~~L~l~~c~~l~~~~---------~~~L~~L~l~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~L~ 226 (430)
...||+|++.+++++..-..++ ...+++|.+++|.+..+. .+.++.+. .-...-|.|+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~n-------KKaa~kp~Le 160 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYN-------KKAADKPKLE 160 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHH-------hhhccCCCce
Confidence 4478888888888876333333 236888999888765432 01111100 0123456788
Q ss_pred EEecccCCCceeeccCCchhh-hhcccccEEEeecCCCccc-----ccCCcccCCCCCEEEEccCCCcccccCch---hh
Q 014145 227 YLELSRLHKVQHLWKENDESN-KAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKCHGLINVLTLS---TS 297 (430)
Q Consensus 227 ~L~l~~~~~l~~~~~~~~~~~-~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~l~~c~~l~~l~~~~---~~ 297 (430)
...... +.+...+...++.. ..-.+|+.+.+.+...-.. +.-.+..+++|+.|++.+.. ++...+.. ..
T Consensus 161 ~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al 238 (388)
T COG5238 161 VVICGR-NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADAL 238 (388)
T ss_pred EEEecc-chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHh
Confidence 777766 34544332222111 2235788888887543221 12234577889999998753 22222111 12
Q ss_pred ccccccceEeecccc
Q 014145 298 ESLVNLGRMKIADCK 312 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~ 312 (430)
...+.|+.|.+.+|-
T Consensus 239 ~~W~~lrEL~lnDCl 253 (388)
T COG5238 239 CEWNLLRELRLNDCL 253 (388)
T ss_pred cccchhhhccccchh
Confidence 344667888888884
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=83.89 E-value=0.76 Score=24.45 Aligned_cols=17 Identities=12% Similarity=0.133 Sum_probs=9.2
Q ss_pred ccEEeeccCCCCcccCCC
Q 014145 361 LEHVVVRQCPTMKIFSQG 378 (430)
Q Consensus 361 L~~L~l~~c~~l~~~~~~ 378 (430)
|++|++++| .++.+|..
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 556666665 44455543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=83.29 E-value=0.72 Score=25.69 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=12.5
Q ss_pred CCCccEEeeccCCCCcc
Q 014145 358 FPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 358 ~~~L~~L~l~~c~~l~~ 374 (430)
+|+|++|++++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 46778888888877764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.2 bits (124), Expect = 2e-07
Identities = 61/339 (17%), Positives = 107/339 (31%), Gaps = 89/339 (26%)
Query: 31 RWEGNLNSTIQKCYEEMIG--FRDIKYLQLGHFPRLQEIWH-GQALPVSFFNNLRH---L 84
+ E S + + Y E + D + + RLQ QAL LR +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-----LELRPAKNV 153
Query: 85 VVDDCTNM---------LSAIPANLIRCLNNLR--WLEVRNCDSLEEVL-HLEEL--NAD 130
++D + L + ++C + + WL ++NC+S E VL L++L D
Sbjct: 154 LID---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 131 KE-HIGPLFPKLFELTLMDL-PKLKRFCNFTENIIEMPELRYLAI----ENCPDMETFIS 184
+L + + +L+R + P L + +N F
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRL------LKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 185 NSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKEND 244
+ + +TT K+ +TD + +S H L D
Sbjct: 265 SCKILLTTRFKQ-----------VTDFLSA----------ATTTHISLDHHSMTL--TPD 301
Query: 245 ESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL-INVLTLSTSESLVNL 303
E + + Q L P EV + ++++ S + L
Sbjct: 302 EVKSLLLKYLDCRP------QDL--PR---------EVLTTNPRRLSIIAESIRDGLATW 344
Query: 304 GRMKIADCKMIEQIIQ--LQVGEEA------KGCVVFEE 334
K +C + II+ L V E A VF
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 3e-04
Identities = 44/264 (16%), Positives = 82/264 (31%), Gaps = 75/264 (28%)
Query: 31 RWEG-------NLNSTIQKCYE--EMIGFRDIKYLQLGHFP--------RLQEIWHG--Q 71
W+ L + I+ E +R + + +L FP L IW +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 72 ALPVSFFNNL--RHLVVDDCTNMLSAIPA---NLIRCLNNLRWL--EVRNCDSLEEVLHL 124
+ + N L LV +IP+ L L N L + + ++ +
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 125 EELNADKE------HIG------------PLFPKLFELTLMDLPKLKRFCNFTENIIEMP 166
++L HIG LF +F +D F E I
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF----LDF-------RFLEQKIRHD 510
Query: 167 ELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSE-ENFFL-----------TDQIQ- 213
+ A + + + ++ ++ + E+L + +F TD ++
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 214 PLFDEKVAFPQLRYLELSRLHKVQ 237
L E A + E + +VQ
Sbjct: 571 ALMAEDEAI----FEEAHK--QVQ 588
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 8e-07
Identities = 56/351 (15%), Positives = 107/351 (30%), Gaps = 57/351 (16%)
Query: 71 QALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD-------SLEEVL- 122
L + ++L L +D C+ + +++ ++ L + L E+
Sbjct: 130 DRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189
Query: 123 ---HLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 179
LE LN + PK E + L I+E+ A N +
Sbjct: 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA-ANLEEF 248
Query: 180 ETFISNSVVHVTT---DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS----- 231
N + + + P KL ++ P+ Q+R L+L
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA--AQIRKLDLLYALLE 306
Query: 232 ---------RLHKVQHLWKEN---DESNKAFA----NLIRLKISECSKLQKLVTPSWHLE 275
+ ++ L N D + A L RL+I + Q + +
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366
Query: 276 NLATLEVSK-CHGLINVLTLS----TSESLVNLGRM-------KIADCKMIEQIIQLQ-- 321
+ +++ C L + + T+ESL ++G ++ E+I L
Sbjct: 367 QRGLIALAQGCQEL-EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425
Query: 322 --VGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCP 370
V GC L LT L P++ +++
Sbjct: 426 NGVRSLLIGCKKLRRF-AFYLRQ-GGLTDLGLSYIGQYSPNVRWMLLGYVG 474
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 5e-05
Identities = 41/347 (11%), Positives = 111/347 (31%), Gaps = 45/347 (12%)
Query: 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQ--EIWHGQALPVSFFNNLRHLVVDDCTNMLSAI 96
++K + ++ L G + +++ G ++ +S LR L + + A
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL--SGFWDAVPAY 280
Query: 97 PANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156
+ + L L + L + PKL L ++D +
Sbjct: 281 LPAVYSVCSRLTTLNLSYATVQSYDL---------VKLLCQCPKLQRLWVLDYIEDAGLE 331
Query: 157 NFTENIIEMPELRYLAIENCPDME----TFISN-SVVHVTTDNKEPEKLTSEENFFLTDQ 211
+LR L + ++ +V V+ + E + +T+
Sbjct: 332 VLAST---CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNA 387
Query: 212 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271
L P + L + + + + F ++ C L++L S
Sbjct: 388 A--LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH----CKDLRRLSL-S 440
Query: 272 WHLENLATLEVSKCHGLINVLTLS----TSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327
L + + + +L+++ + + ++ C + ++ E +
Sbjct: 441 GLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS----GCDSLRKL-------EIR 489
Query: 328 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 374
C ++ L ++ S + + ++ F + + + ++ P + +
Sbjct: 490 DCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL-LGQKMPKLNV 535
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 5e-04
Identities = 49/337 (14%), Positives = 90/337 (26%), Gaps = 64/337 (18%)
Query: 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLH-----------LEE 126
F N + LV+ C + A + NL+ L++R D + H L
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188
Query: 127 LN----------ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176
LN + E + P L L L L++ + P+L L
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR---APQLEELGTGGY 245
Query: 177 PDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELS----- 231
S + V + + S + + ++ +L L LS
Sbjct: 246 TAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS---VCSRLTTLNLSYATVQ 302
Query: 232 ---------RLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282
+ K+Q LW + + L C L++L + +
Sbjct: 303 SYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST----CKDLREL-----RVFPSEPFVM 353
Query: 283 SKCHGLINVLTLSTSESLVNLGRMKIADCKMI--EQIIQLQVGEEAKGCVVFEELGYLGL 340
L +S S L + C+ + +I + A+ +
Sbjct: 354 EPNVALTEQGLVSVSMGCPKL-ESVLYFCRQMTNAALITI-----ARNRPNMTRFRLCII 407
Query: 341 DCL------PSLTSFCLGNYALEFPSLEHVVVRQCPT 371
+ G L + + T
Sbjct: 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLT 444
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.86 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.86 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.85 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.84 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.84 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.84 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.84 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.83 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.83 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.83 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.83 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.83 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.83 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.83 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.82 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.82 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.82 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.81 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.81 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.81 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.8 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.8 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.8 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.79 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.79 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.79 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.78 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.78 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.78 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.77 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.77 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.77 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.77 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.76 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.76 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.75 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.75 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.75 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.74 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.74 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.74 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.74 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.73 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.73 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.72 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.71 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.71 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.7 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.69 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.69 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.69 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.69 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.69 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.68 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.67 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.67 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.66 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.65 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.64 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.64 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.61 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.6 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.6 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.6 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.6 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.59 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.59 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.59 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.59 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.58 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.58 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.56 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.55 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.52 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.51 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.5 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.49 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.49 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.49 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.48 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.48 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.48 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.47 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.44 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.42 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.42 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.41 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.36 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.36 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.34 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.29 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.26 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.26 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.26 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.23 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.22 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.21 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.21 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.19 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.19 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.15 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.1 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.09 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.08 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.08 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.07 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.05 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.03 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.99 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.99 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.95 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.95 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.95 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.94 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.89 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.88 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.87 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.82 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.76 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.71 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.7 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.7 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.7 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.67 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 98.65 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.63 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.56 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.56 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 98.54 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.51 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.47 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.42 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.42 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.42 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.41 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.32 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.3 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.27 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.24 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.22 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.19 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.19 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 98.07 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.06 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.0 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.91 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.86 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 97.83 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.8 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 97.73 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.61 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 97.6 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 97.52 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.97 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 96.64 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 95.49 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 95.0 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 94.97 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 94.67 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 80.31 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 80.06 |
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-20 Score=180.85 Aligned_cols=278 Identities=16% Similarity=0.224 Sum_probs=163.9
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. +..+.. ...+++|++|++++| .+..+ +. +..+++|++|++++|. +..+
T Consensus 62 ~~~~~~L~~L~l~~n~-i~~~~~-----~~~l~~L~~L~L~~n-~i~~~-~~--~~~l~~L~~L~l~~n~-i~~~----- 125 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQ-ITDISP-----LSNLVKLTNLYIGTN-KITDI-SA--LQNLTNLRELYLNEDN-ISDI----- 125 (347)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCC-GG--GTTCTTCSEEECTTSC-CCCC-----
T ss_pred hhhcCCccEEEccCCc-cccchh-----hhcCCcCCEEEccCC-cccCc-hH--HcCCCcCCEEECcCCc-ccCc-----
Confidence 3455666666666554 444322 145666666666665 33332 21 4556666666666653 3333
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~ 202 (430)
+. +..+++|++|+++++..+..++. +..+++|++|.+.+|. ++..+ .++|+.|++++|.+.++.
T Consensus 126 ----~~--~~~l~~L~~L~l~~n~~~~~~~~----~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~- 193 (347)
T 4fmz_A 126 ----SP--LANLTKMYSLNLGANHNLSDLSP----LSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYNQIEDIS- 193 (347)
T ss_dssp ----GG--GTTCTTCCEEECTTCTTCCCCGG----GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECTTSCCCCCG-
T ss_pred ----hh--hccCCceeEEECCCCCCcccccc----hhhCCCCcEEEecCCC-cCCchhhccCCCCCEEEccCCcccccc-
Confidence 11 25566666666666655544432 4566666666666654 33222 456666666666655433
Q ss_pred CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEE
Q 014145 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l 282 (430)
....+++|+.|+++++ .+..+.. + ..+++|++|++++|. +..++. +..+++|++|++
T Consensus 194 ---------------~~~~l~~L~~L~l~~n-~l~~~~~--~---~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 194 ---------------PLASLTSLHYFTAYVN-QITDITP--V---ANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEI 250 (347)
T ss_dssp ---------------GGGGCTTCCEEECCSS-CCCCCGG--G---GGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEEC
T ss_pred ---------------cccCCCccceeecccC-CCCCCch--h---hcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEEC
Confidence 2456777888888775 4444322 2 677888888888863 444443 667788888888
Q ss_pred ccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCcc
Q 014145 283 SKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLE 362 (430)
Q Consensus 283 ~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~ 362 (430)
++| .+..++ .+..+++|++|++++|. +.++. ....+++|++|++++|. ++..... ....+++|+
T Consensus 251 ~~n-~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~ 314 (347)
T 4fmz_A 251 GTN-QISDIN---AVKDLTKLKMLNVGSNQ-ISDIS---------VLNNLSQLNSLFLNNNQ-LGNEDME-VIGGLTNLT 314 (347)
T ss_dssp CSS-CCCCCG---GGTTCTTCCEEECCSSC-CCCCG---------GGGGCTTCSEEECCSSC-CCGGGHH-HHHTCTTCS
T ss_pred CCC-ccCCCh---hHhcCCCcCEEEccCCc-cCCCh---------hhcCCCCCCEEECcCCc-CCCcChh-HhhccccCC
Confidence 876 455543 35667788888887763 33332 12237788888888873 4433321 223478888
Q ss_pred EEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 363 HVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 363 ~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
+|++++|+ ++.++. ...+++|+++++.++
T Consensus 315 ~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 315 TLFLSQNH-ITDIRP-LASLSKMDSADFANQ 343 (347)
T ss_dssp EEECCSSS-CCCCGG-GGGCTTCSEESSSCC
T ss_pred EEEccCCc-cccccC-hhhhhccceeehhhh
Confidence 88888875 444433 556788888888654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-20 Score=185.02 Aligned_cols=303 Identities=17% Similarity=0.151 Sum_probs=223.1
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|.++ .++++.|+++++. ++.+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++| .+
T Consensus 22 ~l~~ip~~~--~~~l~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l 92 (477)
T 2id5_A 22 RFVAVPEGI--PTETRLLDLGKNR-IKTLNQDE---FASFPHLEELELNEN-IVSAVEPGA-FNNLFNLRTLGLRSN-RL 92 (477)
T ss_dssp CCSSCCSCC--CTTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-CC
T ss_pred CcCcCCCCC--CCCCcEEECCCCc-cceECHhH---ccCCCCCCEEECCCC-ccCEeChhh-hhCCccCCEEECCCC-cC
Confidence 355566554 3589999999887 77654322 256899999999997 466654543 778999999999998 46
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEe
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTT 192 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l 192 (430)
..+ |.+.+..+++|++|+++++......+.. +..+++|++|++.++. ++... .++|+.|++
T Consensus 93 ~~~---------~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 93 KLI---------PLGVFTGLSNLTKLDISENKIVILLDYM---FQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp CSC---------CTTSSTTCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEE
T ss_pred Ccc---------CcccccCCCCCCEEECCCCccccCChhH---ccccccCCEEECCCCc-cceeChhhccCCCCCCEEEC
Confidence 665 5565688999999999986433322222 6789999999999876 54443 468999999
Q ss_pred cCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcc
Q 014145 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW 272 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~ 272 (430)
++|.+..+.+ .....+++|+.|+++++ .+..+....+ ..+++|+.|++++++.+..++....
T Consensus 160 ~~n~l~~~~~--------------~~l~~l~~L~~L~l~~n-~i~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~ 221 (477)
T 2id5_A 160 EKCNLTSIPT--------------EALSHLHGLIVLRLRHL-NINAIRDYSF---KRLYRLKVLEISHWPYLDTMTPNCL 221 (477)
T ss_dssp ESCCCSSCCH--------------HHHTTCTTCCEEEEESC-CCCEECTTCS---CSCTTCCEEEEECCTTCCEECTTTT
T ss_pred CCCcCcccCh--------------hHhcccCCCcEEeCCCC-cCcEeChhhc---ccCcccceeeCCCCccccccCcccc
Confidence 9998776541 12467889999999985 6677766666 7889999999999988888887777
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccC
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 352 (430)
...+|++|++++| .++.++.. .+..+++|++|+++++. +..+.. .....+++|++|++.++ .++.+...
T Consensus 222 ~~~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~ 290 (477)
T 2id5_A 222 YGLNLTSLSITHC-NLTAVPYL-AVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGG-QLAVVEPY 290 (477)
T ss_dssp TTCCCSEEEEESS-CCCSCCHH-HHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSS-CCSEECTT
T ss_pred cCccccEEECcCC-cccccCHH-HhcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCC-ccceECHH
Confidence 7779999999997 46666533 35778999999999875 443321 11223789999999986 66666542
Q ss_pred CcccCCCCccEEeeccCCCCcccCCC-CcCCCCceeeeccccC
Q 014145 353 NYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~~~~ 394 (430)
....+++|++|+++++ .++.++.. +..+++|++|++.+++
T Consensus 291 -~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 291 -AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp -TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred -HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 2346899999999987 56666653 4678899999997754
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=180.38 Aligned_cols=291 Identities=15% Similarity=0.161 Sum_probs=191.0
Q ss_pred hhhhhhhc-ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 39 TIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 39 ~~~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
.++.+|.. +..+++|++|+++++. ++.+.... ...+++|++|+++++. +..+++. .+.++++|++|++++| .
T Consensus 56 ~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~ 128 (390)
T 3o6n_A 56 TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNA-IRYLPPH-VFQNVPLLTVLVLERN-D 128 (390)
T ss_dssp EESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS-C
T ss_pred chhhCChhHhcccccCcEEECCCCc-ccccChhh---ccCCCCcCEEECCCCC-CCcCCHH-HhcCCCCCCEEECCCC-c
Confidence 35555555 3467888888888776 66543322 1567888888888873 5554443 3667888888888887 4
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDN 194 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~ 194 (430)
+..+ |.+++..+++|++|+++++. +..++.. .+..+++|++|++.++. ++..+ .++|+.+++++
T Consensus 129 l~~l---------~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 129 LSSL---------PRGIFHNTPKLTTLSMSNNN-LERIEDD--TFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSY 195 (390)
T ss_dssp CCCC---------CTTTTTTCTTCCEEECCSSC-CCBCCTT--TTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCS
T ss_pred cCcC---------CHHHhcCCCCCcEEECCCCc-cCccChh--hccCCCCCCEEECCCCc-CCccccccccccceeeccc
Confidence 5555 55555778888888888763 4334221 15677888888888765 54443 56777888877
Q ss_pred CCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccC
Q 014145 195 KEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHL 274 (430)
Q Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l 274 (430)
+.+..+. ..++|++|+++++ .+..++. ..+++|+.|+++++. +... ..+..+
T Consensus 196 n~l~~~~-------------------~~~~L~~L~l~~n-~l~~~~~------~~~~~L~~L~l~~n~-l~~~-~~l~~l 247 (390)
T 3o6n_A 196 NLLSTLA-------------------IPIAVEELDASHN-SINVVRG------PVNVELTILKLQHNN-LTDT-AWLLNY 247 (390)
T ss_dssp SCCSEEE-------------------CCSSCSEEECCSS-CCCEEEC------CCCSSCCEEECCSSC-CCCC-GGGGGC
T ss_pred ccccccC-------------------CCCcceEEECCCC-eeeeccc------cccccccEEECCCCC-Cccc-HHHcCC
Confidence 7665532 3457888888875 5555532 334788888888864 3433 356678
Q ss_pred CCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc
Q 014145 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY 354 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 354 (430)
++|++|+++++. +..+... .+..+++|++|+++++. +..+.. ....+++|++|+++++ .++.++..
T Consensus 248 ~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~-- 313 (390)
T 3o6n_A 248 PGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERN-- 313 (390)
T ss_dssp TTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGG--
T ss_pred CCccEEECCCCc-CCCcChh-HccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cceecCcc--
Confidence 888888888864 4444332 35677888888888764 333321 1233788888888887 56666542
Q ss_pred ccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 355 ALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
...+++|++|++++|. ++.++ ...+++|++|++.+++
T Consensus 314 ~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 314 QPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 350 (390)
T ss_dssp HHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred ccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCC
Confidence 2347888889888874 55554 4467888888886543
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-19 Score=174.58 Aligned_cols=277 Identities=12% Similarity=0.165 Sum_probs=212.2
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|++|++.++. +..+. +. ..+++|++|++++| .+..+++ +..+++|++|++++| .+..+
T Consensus 42 ~l~~L~~L~l~~~~-i~~~~-~~----~~~~~L~~L~l~~n-~i~~~~~---~~~l~~L~~L~L~~n-~i~~~------- 103 (347)
T 4fmz_A 42 ELESITKLVVAGEK-VASIQ-GI----EYLTNLEYLNLNGN-QITDISP---LSNLVKLTNLYIGTN-KITDI------- 103 (347)
T ss_dssp HHTTCSEEECCSSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC-------
T ss_pred hcccccEEEEeCCc-cccch-hh----hhcCCccEEEccCC-ccccchh---hhcCCcCCEEEccCC-cccCc-------
Confidence 57899999999876 66532 12 57899999999998 5666444 678999999999998 45554
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccCCC
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEE 204 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~ 204 (430)
+ . +..+++|++|+++++ .+..++. +..+++|++|++.+|..+...+ .++|+.|++++|.+..+.
T Consensus 104 --~-~-~~~l~~L~~L~l~~n-~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--- 171 (347)
T 4fmz_A 104 --S-A-LQNLTNLRELYLNED-NISDISP----LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--- 171 (347)
T ss_dssp --G-G-GTTCTTCSEEECTTS-CCCCCGG----GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG---
T ss_pred --h-H-HcCCCcCCEEECcCC-cccCchh----hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCch---
Confidence 2 2 478899999999986 4555543 6789999999999998777655 578999999999877655
Q ss_pred ceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEcc
Q 014145 205 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~ 284 (430)
....+++|++|+++++ .++.+.. + ..+++|+.|+++++. +..++. +..+++|++|++++
T Consensus 172 -------------~~~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 172 -------------PIANLTDLYSLSLNYN-QIEDISP--L---ASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGN 230 (347)
T ss_dssp -------------GGGGCTTCSEEECTTS-CCCCCGG--G---GGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCS
T ss_pred -------------hhccCCCCCEEEccCC-ccccccc--c---cCCCccceeecccCC-CCCCch-hhcCCcCCEEEccC
Confidence 2467899999999996 5555433 3 788999999999974 444433 67889999999999
Q ss_pred CCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEE
Q 014145 285 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHV 364 (430)
Q Consensus 285 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L 364 (430)
|. +..++. +..+++|++|++++|. +..+. ....+++|++|++.++ .+++++. ...+++|++|
T Consensus 231 n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L 292 (347)
T 4fmz_A 231 NK-ITDLSP---LANLSQLTWLEIGTNQ-ISDIN---------AVKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSL 292 (347)
T ss_dssp SC-CCCCGG---GTTCTTCCEEECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred Cc-cCCCcc---hhcCCCCCEEECCCCc-cCCCh---------hHhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEE
Confidence 74 555553 6788999999999874 43332 2233889999999997 6666642 3458999999
Q ss_pred eeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 365 VVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 365 ~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
++++|.-....+..+..+++|+++++.++.
T Consensus 293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 999986544444556678999999998765
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-20 Score=188.54 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=69.9
Q ss_pred cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccc
Q 014145 46 EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 46 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 125 (430)
.+..+++|++|+++++. +..+.... ...+++|++|+++++ .+....|.. +.++++|++|++++|. +..+
T Consensus 52 ~~~~l~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~L~~n~-i~~l---- 120 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQ-IYWIHEDT---FQSQHRLDTLVLTAN-PLIFMAETA-LSGPKALKHLFFIQTG-ISSI---- 120 (606)
T ss_dssp TSTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCSEECTTT-TSSCTTCCEEECTTSC-CSCG----
T ss_pred HhccCccceEEECCCCc-cceeChhh---ccCccccCeeeCCCC-cccccChhh-hcccccccEeeccccC-cccC----
Confidence 45566677777776665 44432211 145666777777665 344433332 5566677777776663 3333
Q ss_pred cccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCce--EEEecCCCC
Q 014145 126 ELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVV--HVTTDNKEP 197 (430)
Q Consensus 126 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~--~L~l~~~~~ 197 (430)
+...+..+++|++|+++++ .+..++... ...+++|++|++.++. ++..+ ..+++ .+++++|.+
T Consensus 121 -----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 121 -----DFIPLHNQKTLESLYLGSN-HISSIKLPK--GFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp -----GGSCCTTCTTCCEEECCSS-CCCCCCCCT--TCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred -----CcchhccCCcccEEECCCC-cccccCccc--ccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCcc
Confidence 1122356667777777664 333331111 2236667777766654 33332 33455 566666654
Q ss_pred Cc
Q 014145 198 EK 199 (430)
Q Consensus 198 ~~ 199 (430)
.+
T Consensus 192 ~~ 193 (606)
T 3t6q_A 192 AG 193 (606)
T ss_dssp CE
T ss_pred Cc
Confidence 43
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-19 Score=177.04 Aligned_cols=291 Identities=13% Similarity=0.186 Sum_probs=162.6
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. +..+.. ...+++|++|++++| .+...++ +..+++|++|++++|. +..+.
T Consensus 86 ~~~l~~L~~L~l~~n~-l~~~~~-----~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---- 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQ-IADITP-----LANLTNLTGLTLFNN-QITDIDP---LKNLTNLNRLELSSNT-ISDIS---- 150 (466)
T ss_dssp GTTCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSS-CCCCCGG---GTTCTTCSEEEEEEEE-ECCCG----
T ss_pred hhccccCCEEECCCCc-cccChh-----hcCCCCCCEEECCCC-CCCCChH---HcCCCCCCEEECCCCc-cCCCh----
Confidence 4445555555555544 333221 145566666666665 3443322 4456666666666652 32221
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~ 202 (430)
. +..+++|++|++.+ .+..++. +..+++|++|++.+|. ++.++ .++|+.|++++|.+.++.+
T Consensus 151 ------~-~~~l~~L~~L~l~~--~~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 151 ------A-LSGLTSLQQLSFGN--QVTDLKP----LANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp ------G-GTTCTTCSEEEEEE--SCCCCGG----GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred ------h-hccCCcccEeecCC--cccCchh----hccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCccccccc
Confidence 1 13334444444432 1111111 3455566666665554 33322 3455666665555443321
Q ss_pred ------CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 203 ------EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 203 ------~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
++.+.+.+..-..+.....+++|+.|+++++ .+..+.. + ..+++|+.|+++++. +..++. +..+++
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~--~---~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 288 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN-QISNLAP--L---SGLTKLTELKLGANQ-ISNISP-LAGLTA 288 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCSSC-CCCCGG-GTTCTT
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC-ccccchh--h---hcCCCCCEEECCCCc-cCcccc-ccCCCc
Confidence 1111111110001123456788888888885 4444332 2 677888888888864 444443 667888
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|+.|++++|. +..++. ++.+++|+.|++++|. +..+. ....+++|++|++.++ .++.++ ...
T Consensus 289 L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~---~l~ 350 (466)
T 1o6v_A 289 LTNLELNENQ-LEDISP---ISNLKNLTYLTLYFNN-ISDIS---------PVSSLTKLQRLFFYNN-KVSDVS---SLA 350 (466)
T ss_dssp CSEEECCSSC-CSCCGG---GGGCTTCSEEECCSSC-CSCCG---------GGGGCTTCCEEECCSS-CCCCCG---GGT
T ss_pred cCeEEcCCCc-ccCchh---hcCCCCCCEEECcCCc-CCCch---------hhccCccCCEeECCCC-ccCCch---hhc
Confidence 8888888864 555543 5678889999998874 33322 1223788999999887 566553 234
Q ss_pred CCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 357 EFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 357 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
.+++|++|++++|......| ...+++|+++++.++.
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 351 NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCc
Confidence 58899999998885544444 5578899999987653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=186.28 Aligned_cols=288 Identities=16% Similarity=0.188 Sum_probs=162.7
Q ss_pred chhhhhhhcc-cCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCC
Q 014145 38 STIQKCYEEM-IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 116 (430)
+.+..+|... ..+++|++|+++++. +..++... ...+++|++|++++|. +..+++. .++++++|++|++++|
T Consensus 61 ~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n- 133 (597)
T 3oja_B 61 STMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNA-IRYLPPH-VFQNVPLLTVLVLERN- 133 (597)
T ss_dssp CEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSS-
T ss_pred CCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHH---hcCCCCCCEEECCCCc-CCCCCHH-HHcCCCCCCEEEeeCC-
Confidence 3455566553 468899999999877 77654322 1568899999999874 6664443 3678999999999998
Q ss_pred CccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEec
Q 014145 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTD 193 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~ 193 (430)
.+..+ |.+++..+++|++|+++++. +..++.. .+..+++|++|++.+|. ++..+ .++|+.++++
T Consensus 134 ~l~~l---------~~~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~L~l~ 200 (597)
T 3oja_B 134 DLSSL---------PRGIFHNTPKLTTLSMSNNN-LERIEDD--TFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVS 200 (597)
T ss_dssp CCCCC---------CTTTTTTCTTCCEEECCSSC-CCBCCTT--TTTTCTTCCEEECTTSC-CSBCCGGGCTTCSEEECC
T ss_pred CCCCC---------CHHHhccCCCCCEEEeeCCc-CCCCChh--hhhcCCcCcEEECcCCC-CCCcChhhhhhhhhhhcc
Confidence 46555 56666888999999999864 4444321 26678899999998875 55544 5678888888
Q ss_pred CCCCCcccC---CCceeeecC-cccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC
Q 014145 194 NKEPEKLTS---EENFFLTDQ-IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT 269 (430)
Q Consensus 194 ~~~~~~~~~---~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~ 269 (430)
+|.+..+.. ++.+.+.+. ...+ .....++|+.|+++++ .++.. ..+ ..+++|+.|+++++......|.
T Consensus 201 ~n~l~~l~~~~~L~~L~ls~n~l~~~--~~~~~~~L~~L~L~~n-~l~~~--~~l---~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 201 YNLLSTLAIPIAVEELDASHNSINVV--RGPVNVELTILKLQHN-NLTDT--AWL---LNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp SSCCSEEECCTTCSEEECCSSCCCEE--ECSCCSCCCEEECCSS-CCCCC--GGG---GGCTTCSEEECCSSCCCEEESG
T ss_pred cCccccccCCchhheeeccCCccccc--ccccCCCCCEEECCCC-CCCCC--hhh---ccCCCCCEEECCCCccCCCCHH
Confidence 877655331 111111110 0000 0112345555555553 23321 111 4555666666655533333344
Q ss_pred CcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCcee
Q 014145 270 PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSF 349 (430)
Q Consensus 270 ~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 349 (430)
.+..+++|+.|++++| .+..++. ....+++|+.|++++|. +..++. ....+++|++|+++++ .++.+
T Consensus 273 ~~~~l~~L~~L~Ls~N-~l~~l~~--~~~~l~~L~~L~Ls~N~-l~~i~~--------~~~~l~~L~~L~L~~N-~l~~~ 339 (597)
T 3oja_B 273 PFVKMQRLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVER--------NQPQFDRLENLYLDHN-SIVTL 339 (597)
T ss_dssp GGTTCSSCCEEECTTS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCGG--------GHHHHTTCSEEECCSS-CCCCC
T ss_pred HhcCccCCCEEECCCC-CCCCCCc--ccccCCCCcEEECCCCC-CCccCc--------ccccCCCCCEEECCCC-CCCCc
Confidence 4555556666666554 2343332 23445556666665543 222210 1122555666666554 33443
Q ss_pred ccCCcccCCCCccEEeeccCC
Q 014145 350 CLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 350 ~~~~~~~~~~~L~~L~l~~c~ 370 (430)
+. ..+++|++|++.+++
T Consensus 340 ~~----~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 340 KL----STHHTLKNLTLSHND 356 (597)
T ss_dssp CC----CTTCCCSEEECCSSC
T ss_pred Ch----hhcCCCCEEEeeCCC
Confidence 32 125556666665543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=195.77 Aligned_cols=321 Identities=13% Similarity=0.174 Sum_probs=181.4
Q ss_pred chhhhhhhcccCCCCcceeecccccCCee------------------eccCCCCCCC--CCCCcceEEEeCCCCCCccCc
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQE------------------IWHGQALPVS--FFNNLRHLVVDDCTNMLSAIP 97 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~------------------~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~ 97 (430)
+.+..+|..+..+++|++|+++++. +.. ++... . .+++|++|++++|..... .|
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l----~~~~l~~L~~L~L~~n~l~~~-~p 266 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDL----KWDNLKDLTDVEVYNCPNLTK-LP 266 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEECCTTCSS-CC
T ss_pred CCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhh----hhcccCCCCEEEecCCcCCcc-Ch
Confidence 3455577778888899999998877 665 33333 4 788899999988853333 44
Q ss_pred hhHHHhcCCCCEEEEecCCCccE--ecccccccCCccCcCCc------CCccceeecCCccccccccC--CccccccCCC
Q 014145 98 ANLIRCLNNLRWLEVRNCDSLEE--VLHLEELNADKEHIGPL------FPKLFELTLMDLPKLKRFCN--FTENIIEMPE 167 (430)
Q Consensus 98 ~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~l~~~------l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~ 167 (430)
.. +.++++|++|++++|..+.. + |.++ .. +++|++|+++++ .+..+|. . +..+++
T Consensus 267 ~~-l~~l~~L~~L~Ls~n~~l~~~~l---------p~~~-~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~---l~~l~~ 331 (636)
T 4eco_A 267 TF-LKALPEMQLINVACNRGISGEQL---------KDDW-QALADAPVGEKIQIIYIGYN-NLKTFPVETS---LQKMKK 331 (636)
T ss_dssp TT-TTTCSSCCEEECTTCTTSCHHHH---------HHHH-HHHHHSGGGGTCCEEECCSS-CCSSCCCHHH---HTTCTT
T ss_pred HH-HhcCCCCCEEECcCCCCCccccc---------hHHH-HhhhccccCCCCCEEECCCC-cCCccCchhh---hccCCC
Confidence 33 67788888888888863432 3 2332 22 367777777765 3334543 2 556667
Q ss_pred ccEEEeccCCCcc-ccc----CCCceEEEecCCCCCcccC--------CCceeeec-CcccccccCCC--CCCCCEEecc
Q 014145 168 LRYLAIENCPDME-TFI----SNSVVHVTTDNKEPEKLTS--------EENFFLTD-QIQPLFDEKVA--FPQLRYLELS 231 (430)
Q Consensus 168 L~~L~l~~c~~l~-~~~----~~~L~~L~l~~~~~~~~~~--------~~~l~~~~-~~~~~~~~~~~--~~~L~~L~l~ 231 (430)
|++|++.+|. ++ .++ .++|+.|++++|.+..+.. ++.+.+.+ ....+-..... +++|+.|+++
T Consensus 332 L~~L~L~~N~-l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls 410 (636)
T 4eco_A 332 LGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS 410 (636)
T ss_dssp CCEEECCSCC-CEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECC
T ss_pred CCEEeCcCCc-CccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECc
Confidence 7777776654 33 333 2456666666665443321 11111111 01111111222 2367777777
Q ss_pred cCCCceeeccCCchhh----hhcccccEEEeecCCCcccccCCcc-cCCCCCEEEEccCCCcccccCchhh------ccc
Q 014145 232 RLHKVQHLWKENDESN----KAFANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLSTS------ESL 300 (430)
Q Consensus 232 ~~~~l~~~~~~~~~~~----~~l~~L~~L~l~~c~~l~~l~~~l~-~l~~L~~L~l~~c~~l~~l~~~~~~------~~l 300 (430)
++ .+....+..+... -.+++|+.|+++++ .+..+|.... .+++|+.|+++++. +..++...+. .++
T Consensus 411 ~N-~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 411 YN-EIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp SS-CTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTG
T ss_pred CC-cCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccccccccc
Confidence 64 3333222222000 04557777777775 3445655433 46777777777753 4455442111 112
Q ss_pred cccceEeeccccccchhhcccccccCCcce--eecccceEeccCCCCCceeccCCcccCCCCccEEeecc------CCCC
Q 014145 301 VNLGRMKIADCKMIEQIIQLQVGEEAKGCV--VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ------CPTM 372 (430)
Q Consensus 301 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~------c~~l 372 (430)
++|++|+++++. +..++. ... .+++|++|++.++ .++.++. ....+++|++|++++ +...
T Consensus 488 ~~L~~L~Ls~N~-l~~lp~--------~~~~~~l~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 488 YLLTSIDLRFNK-LTKLSD--------DFRATTLPYLVGIDLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp GGCCEEECCSSC-CCBCCG--------GGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred CCccEEECcCCc-CCccCh--------hhhhccCCCcCEEECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccCccc
Confidence 377777777764 333321 111 3677888888875 4555554 233478888888854 3334
Q ss_pred cccCCCCcCCCCceeeeccccCC
Q 014145 373 KIFSQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 373 ~~~~~~~~~~~~L~~l~l~~~~~ 395 (430)
+.+|..+..+++|++|++.++.-
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCC
T ss_pred ccChHHHhcCCCCCEEECCCCcC
Confidence 56676677788888888876543
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=187.39 Aligned_cols=63 Identities=17% Similarity=0.278 Sum_probs=37.0
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
+..+++|++|+++++. +..+.... ...+++|++|++++|. +....|.. ++++++|++|++++|
T Consensus 52 ~~~l~~L~~L~Ls~n~-l~~i~~~~---~~~l~~L~~L~Ls~n~-l~~~~p~~-~~~l~~L~~L~L~~n 114 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCE-IETIEDKA---WHGLHHLSNLILTGNP-IQSFSPGS-FSGLTSLENLVAVET 114 (606)
T ss_dssp TTTCTTCCEEECTTCC-CCEECTTT---TTTCTTCCEEECTTCC-CCCCCTTS-STTCTTCCEEECTTS
T ss_pred ccCCccCcEEeCCCCc-ccccCHHH---hhchhhcCEeECCCCc-ccccChhh-cCCcccCCEEEccCC
Confidence 4466777777777665 55443221 1456677777777663 44443433 556777777777766
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-18 Score=176.96 Aligned_cols=240 Identities=18% Similarity=0.126 Sum_probs=116.5
Q ss_pred CCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCC-cc-----cC
Q 014145 135 GPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPE-KL-----TS 202 (430)
Q Consensus 135 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~-~~-----~~ 202 (430)
+..+++|++|+++++ .+..+|.. +..+++|++|++.+|. ++..+ .++|+.|++++|... .+ ..
T Consensus 274 ~~~l~~L~~L~l~~n-~l~~lp~~---l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 274 FHCFSGLQELDLTAT-HLSELPSG---LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TTTCTTCSEEECTTS-CCSCCCSS---CCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred hccccCCCEEeccCC-ccCCCChh---hcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 345566666666664 34445443 4556666666666654 33221 345666666666532 11 11
Q ss_pred CCceeeec----Ccccc---cccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccC
Q 014145 203 EENFFLTD----QIQPL---FDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHL 274 (430)
Q Consensus 203 ~~~l~~~~----~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l 274 (430)
+++++.++ ..... ....+.+++|++|+++++ .+..+.+..+ ..+++|+.|+++++......+. .+..+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAF---KECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTT---TTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHh---cCCccCCeEECCCCcCCCcccchhhhCc
Confidence 22222211 00000 112344556666666553 3444444444 4556666666665533222222 24455
Q ss_pred CCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc
Q 014145 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY 354 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 354 (430)
++|+.|++++|. +...+.. .++.+++|++|++++|......+. .......+++|++|++++| .++.+... .
T Consensus 425 ~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~ 495 (606)
T 3t6q_A 425 HLLKVLNLSHSL-LDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQ-----KTNSLQTLGRLEILVLSFC-DLSSIDQH-A 495 (606)
T ss_dssp TTCCEEECTTCC-CBTTCTT-TTTTCTTCCEEECTTCBCGGGEEC-----SSCGGGGCTTCCEEECTTS-CCCEECTT-T
T ss_pred ccCCEEECCCCc-cCCcCHH-HHhCCCCCCEEECCCCCCCccccc-----cchhhccCCCccEEECCCC-ccCccChh-h
Confidence 666666666653 2222211 244566666666666543211110 0011223666777777765 44544321 2
Q ss_pred ccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 355 ALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
...+++|++|++++|.-....|..+..+++| .+++.++
T Consensus 496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 2346677777777764444444455566666 6766554
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=191.72 Aligned_cols=241 Identities=15% Similarity=0.015 Sum_probs=114.9
Q ss_pred hhhcccC-CCCcceeecccccCCeee-ccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccE
Q 014145 43 CYEEMIG-FRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE 120 (430)
Q Consensus 43 l~~~~~~-l~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 120 (430)
+|..+.. +++|++|+++++. +... +... ..+++|+.|++++|. +....|...+..+++|++|++++|.....
T Consensus 285 ip~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~----~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 285 IPDFLSGACDTLTGLDLSGNH-FYGAVPPFF----GSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp CCCCSCTTCTTCSEEECCSSE-EEECCCGGG----GGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred cCHHHHhhcCcCCEEECcCCc-CCCccchHH----hcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 3444433 2666666666665 3321 1111 445666666666653 33223433355566666666666532112
Q ss_pred ecc-ccc----c-----------cCCccCcC-CcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcc-cc
Q 014145 121 VLH-LEE----L-----------NADKEHIG-PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME-TF 182 (430)
Q Consensus 121 ~~~-~~~----~-----------~~~~~~l~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~~ 182 (430)
+.. +.. + +..|..+. ..+++|++|+++++.....+|.. +..+++|++|++.+|. ++ ..
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~N~-l~~~~ 434 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT---LSNCSELVSLHLSFNY-LSGTI 434 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG---GGGCTTCCEEECCSSE-EESCC
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH---HhcCCCCCEEECcCCc-ccCcc
Confidence 200 000 0 00011110 11345555555554333233322 4455555555555543 22 11
Q ss_pred c-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEE
Q 014145 183 I-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLK 257 (430)
Q Consensus 183 ~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~ 257 (430)
+ .++|+.|++++|.+.+.. ....+.+++|++|+++++ .+....+..+ ..+++|+.|+
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~--------------p~~~~~l~~L~~L~L~~N-~l~~~~p~~l---~~l~~L~~L~ 496 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEI--------------PQELMYVKTLETLILDFN-DLTGEIPSGL---SNCTNLNWIS 496 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCC--------------CGGGGGCTTCCEEECCSS-CCCSCCCGGG---GGCTTCCEEE
T ss_pred cHHHhcCCCCCEEECCCCcccCcC--------------CHHHcCCCCceEEEecCC-cccCcCCHHH---hcCCCCCEEE
Confidence 1 345555555555543221 122345566666666664 3332223333 5566666666
Q ss_pred eecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 258 ISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 258 l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
++++.....+|.++..+++|+.|++++|.-...+|. .++.+++|++|++++|+.
T Consensus 497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEE
T ss_pred ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCcc
Confidence 666654445666666666666666666644334433 245566666666666543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-19 Score=191.31 Aligned_cols=319 Identities=11% Similarity=-0.000 Sum_probs=187.4
Q ss_pred cCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccc--
Q 014145 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE-- 125 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-- 125 (430)
..+++|++|+++++. +....... ..+++|++|++++|. +....|.. +..+++|++|++++|.. ....+..
T Consensus 197 ~~l~~L~~L~Ls~n~-l~~~~~~l----~~l~~L~~L~Ls~n~-l~~~~~~~-l~~l~~L~~L~Ls~n~l-~~~~~~~~l 268 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNN-FSTGIPFL----GDCSALQHLDISGNK-LSGDFSRA-ISTCTELKLLNISSNQF-VGPIPPLPL 268 (768)
T ss_dssp TTCTTCCEEECCSSC-CCSCCCBC----TTCCSCCEEECCSSC-CCSCHHHH-TTTCSSCCEEECCSSCC-EESCCCCCC
T ss_pred ccCCcCCEEECcCCc-CCCCCccc----ccCCCCCEEECcCCc-CCCcccHH-HhcCCCCCEEECCCCcc-cCccCcccc
Confidence 456777777777665 33211112 456777777777763 33323332 56677777777776632 2111100
Q ss_pred -----------cc-cCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCc
Q 014145 126 -----------EL-NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSV 187 (430)
Q Consensus 126 -----------~~-~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L 187 (430)
.+ +..|..+...+++|++|+++++.....+|.. +..+++|++|++.+|.....++ .++|
T Consensus 269 ~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~---~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF---FGSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp TTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG---GGGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred CCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH---HhcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 00 0223444333467777777765443334333 5667777777777665221222 4567
Q ss_pred eEEEecCCCCCcc-c--------CCCceeeecC--cccccccCCC--CCCCCEEecccCCCceeeccCCchhhhhccccc
Q 014145 188 VHVTTDNKEPEKL-T--------SEENFFLTDQ--IQPLFDEKVA--FPQLRYLELSRLHKVQHLWKENDESNKAFANLI 254 (430)
Q Consensus 188 ~~L~l~~~~~~~~-~--------~~~~l~~~~~--~~~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~ 254 (430)
+.|++++|.+.+. . +++.+.+.+. ...+...... +++|++|+++++ .+....+..+ ..+++|+
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l---~~l~~L~ 421 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTL---SNCSELV 421 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGG---GGCTTCC
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHH---hcCCCCC
Confidence 7777777764321 1 1222222110 0111122222 567888888875 4444434444 6778888
Q ss_pred EEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecc
Q 014145 255 RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEE 334 (430)
Q Consensus 255 ~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 334 (430)
.|+++++.....+|..+..+++|+.|++++|.-...++. .+..+++|++|++++|.....++ .....+++
T Consensus 422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~ 491 (768)
T 3rgz_A 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEIP--------SGLSNCTN 491 (768)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTT
T ss_pred EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcCC--------HHHhcCCC
Confidence 888888755556677777888888888888764444443 35677888888888875432322 12233788
Q ss_pred cceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 335 LGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 335 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
|++|++.++.--..++.. ...+++|++|++++|.....+|..+..+++|+.+++.++
T Consensus 492 L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKW--IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp CCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred CCEEEccCCccCCcCChH--HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 888888887544455542 234788899999888666677877778888888888664
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-20 Score=189.53 Aligned_cols=311 Identities=11% Similarity=0.069 Sum_probs=209.8
Q ss_pred hhhccc--CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCc-cCchhHHHhc------CCCCEEEEe
Q 014145 43 CYEEMI--GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCL------NNLRWLEVR 113 (430)
Q Consensus 43 l~~~~~--~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l------~~L~~L~l~ 113 (430)
+|..+. .+++|++|+++++.-...++... ..+++|++|++++|..+.. ..|.. +..+ ++|++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l----~~l~~L~~L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL----KALPEMQLINVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT----TTCSSCCEEECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH----hcCCCCCEEECcCCCCCccccchHH-HHhhhccccCCCCCEEECC
Confidence 888888 89999999999887333433333 6789999999999853554 34444 4444 899999999
Q ss_pred cCCCccEecccccccCCcc--CcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-----CCC
Q 014145 114 NCDSLEEVLHLEELNADKE--HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS 186 (430)
Q Consensus 114 ~~~~l~~~~~~~~~~~~~~--~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~ 186 (430)
+|. +..+ |. .+ ..+++|++|+++++.....+| . +..+++|++|.+.++. ++.++ ..+
T Consensus 314 ~n~-l~~i---------p~~~~l-~~l~~L~~L~L~~N~l~g~ip-~---~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~ 377 (636)
T 4eco_A 314 YNN-LKTF---------PVETSL-QKMKKLGMLECLYNQLEGKLP-A---FGSEIKLASLNLAYNQ-ITEIPANFCGFTE 377 (636)
T ss_dssp SSC-CSSC---------CCHHHH-TTCTTCCEEECCSCCCEEECC-C---CEEEEEESEEECCSSE-EEECCTTSEEECT
T ss_pred CCc-CCcc---------Cchhhh-ccCCCCCEEeCcCCcCccchh-h---hCCCCCCCEEECCCCc-cccccHhhhhhcc
Confidence 884 4454 44 33 777888888888764433665 2 6677788888887764 44444 345
Q ss_pred -ceEEEecCCCCCcccC------CCceeeecC----ccccc-ccCC-------CCCCCCEEecccCCCceeeccCCchhh
Q 014145 187 -VVHVTTDNKEPEKLTS------EENFFLTDQ----IQPLF-DEKV-------AFPQLRYLELSRLHKVQHLWKENDESN 247 (430)
Q Consensus 187 -L~~L~l~~~~~~~~~~------~~~l~~~~~----~~~~~-~~~~-------~~~~L~~L~l~~~~~l~~~~~~~~~~~ 247 (430)
|+.|++++|.+..+.. ++++..++- ..... ..+. .+++|++|+++++ .++.++...+
T Consensus 378 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--- 453 (636)
T 4eco_A 378 QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELF--- 453 (636)
T ss_dssp TCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHH---
T ss_pred cCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHH---
Confidence 7888888777654432 113333221 11100 1122 5679999999996 5666544433
Q ss_pred hhcccccEEEeecCCCcccccCCccc--------CCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhc
Q 014145 248 KAFANLIRLKISECSKLQKLVTPSWH--------LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~l~~--------l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
..+++|+.|+++++. +..+|..... +++|+.|++++|. +..++.......+++|++|+++++. +..++
T Consensus 454 ~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip- 529 (636)
T 4eco_A 454 STGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFP- 529 (636)
T ss_dssp HTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCC-
T ss_pred ccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCcC-
Confidence 568999999999974 5577765432 2299999999974 6677653111389999999999875 33333
Q ss_pred ccccccCCcceeecccceEeccCCC------CCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 320 LQVGEEAKGCVVFEELGYLGLDCLP------SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 320 ~~~~~~~~~~~~~~~L~~L~l~~c~------~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
.....+++|++|+++++. -...++. ....+++|++|++++|.- +.+|.... ++|+.|++.++
T Consensus 530 -------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 530 -------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp -------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSC
T ss_pred -------hhhhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCC
Confidence 123348999999996543 2344544 234589999999999855 88887753 89999999776
Q ss_pred C
Q 014145 394 E 394 (430)
Q Consensus 394 ~ 394 (430)
+
T Consensus 598 ~ 598 (636)
T 4eco_A 598 P 598 (636)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-18 Score=173.10 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=96.6
Q ss_pred cccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcc
Q 014145 250 FANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC 329 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 329 (430)
.++|+.|+++++......+..+..+++|++|++++|. +..++.. .+..+++|++|++++|. +..+.. ...
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~ 343 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDN-AFWGLTHLLKLNLSQNF-LGSIDS-------RMF 343 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CCEECG-------GGG
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChh-HhcCcccCCEEECCCCc-cCCcCh-------hHh
Confidence 3689999999876655666778889999999999975 5555432 35778999999999874 333321 112
Q ss_pred eeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCC-CcCCCCceeeeccccC
Q 014145 330 VVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 330 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~l~l~~~~ 394 (430)
..+++|++|+++++ .++.+... ....+++|++|+++++ .++.++.. +..+++|++|++.+++
T Consensus 344 ~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 344 ENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCcccCCEEECCCC-cccccChh-hccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 23889999999997 56666432 2345899999999996 56666654 4688999999996654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=190.47 Aligned_cols=233 Identities=12% Similarity=0.039 Sum_probs=141.3
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-----CCC-ceEEEecCCCCCcccC------C
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNS-VVHVTTDNKEPEKLTS------E 203 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~-L~~L~l~~~~~~~~~~------~ 203 (430)
..+++|+.|+++++. +..+| . +..+++|++|.+.+|. ++.++ .++ |+.|++++|.+..+.. .
T Consensus 570 ~~L~~L~~L~Ls~N~-l~~lp-~---~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~ 643 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNK-VRHLE-A---FGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643 (876)
T ss_dssp TTCTTCCEEECTTSC-CCBCC-C---CCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCS
T ss_pred hcCCCCCEEECCCCC-cccch-h---hcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhcccc
Confidence 667777777777753 33555 2 6677777777777765 44444 234 7777777777554431 1
Q ss_pred Cceeeec----Cc----ccccccCC--CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCccc
Q 014145 204 ENFFLTD----QI----QPLFDEKV--AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 204 ~~l~~~~----~~----~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~ 273 (430)
..+..++ .. ..+....+ ..++|+.|+++++ .+..++...+ ..+++|+.|+++++ .+..+|.....
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~---~~l~~L~~L~Ls~N-~L~~ip~~~~~ 718 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELF---ATGSPISTIILSNN-LMTSIPENSLK 718 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHH---HTTCCCSEEECCSC-CCSCCCTTSSS
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHH---ccCCCCCEEECCCC-cCCccChHHhc
Confidence 1133221 01 11111122 2347888888875 4555443322 46788888888886 45566654433
Q ss_pred --------CCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCC-
Q 014145 274 --------LENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP- 344 (430)
Q Consensus 274 --------l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~- 344 (430)
+++|+.|++++| .+..++.......+++|+.|+++++. +..++ .....+++|+.|++++++
T Consensus 719 ~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp--------~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 719 PKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFP--------TQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp CTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCC--------CGGGGCTTCCEEECCCCBC
T ss_pred cccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccc--------hhhhcCCCCCEEECCCCCC
Confidence 238888998887 46666542111378889999988864 33332 122347888899887643
Q ss_pred -----CCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 345 -----SLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 345 -----~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
-...++. ....+++|++|++++|.- +.+|.... ++|+.|++.+++
T Consensus 789 ls~N~l~~~ip~--~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 789 AEGNRILRQWPT--GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp TTCCBCCCCCCT--TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred cccccccccChH--HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 2334443 233588899999988754 78887653 689999997664
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.6e-20 Score=195.15 Aligned_cols=322 Identities=14% Similarity=0.137 Sum_probs=198.4
Q ss_pred chhhhhhhcccCCCCcceeecccccCCee------------------eccCCCCCCC--CCCCcceEEEeCCCCCCccCc
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQE------------------IWHGQALPVS--FFNNLRHLVVDDCTNMLSAIP 97 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~------------------~~~~~~~~~~--~l~~L~~L~l~~c~~l~~~~~ 97 (430)
+.+..+|..+..+++|++|+++++. +.. ++... + .+++|++|++++|..... .|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l----~f~~L~~L~~L~Ls~N~l~~~-iP 508 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEEL----SWSNLKDLTDVELYNCPNMTQ-LP 508 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC----CGGGCTTCCEEEEESCTTCCS-CC
T ss_pred CcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhh----hhccCCCCCEEECcCCCCCcc-Ch
Confidence 3445588888999999999999887 665 33333 4 789999999999854444 45
Q ss_pred hhHHHhcCCCCEEEEecCCCccE--ecccccccCCccCc------CCcCCccceeecCCccccccccC--CccccccCCC
Q 014145 98 ANLIRCLNNLRWLEVRNCDSLEE--VLHLEELNADKEHI------GPLFPKLFELTLMDLPKLKRFCN--FTENIIEMPE 167 (430)
Q Consensus 98 ~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~l------~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~~~~~ 167 (430)
.. +.++++|++|++++|..+.. + |.++ ...+++|++|+++++. +..+|. . +..+++
T Consensus 509 ~~-l~~L~~L~~L~Ls~N~~lsg~~i---------P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~---l~~L~~ 574 (876)
T 4ecn_A 509 DF-LYDLPELQSLNIACNRGISAAQL---------KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASAS---LQKMVK 574 (876)
T ss_dssp GG-GGGCSSCCEEECTTCTTSCHHHH---------HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHH---HTTCTT
T ss_pred HH-HhCCCCCCEEECcCCCCcccccc---------hHHHHhhhhcccccCCccEEEeeCCc-CCccCChhh---hhcCCC
Confidence 33 78899999999999963443 3 2222 2456799999999974 446765 3 778999
Q ss_pred ccEEEeccCCCccccc----CCCceEEEecCCCCCcccC--------CCceeeec-CcccccccCCCC--CCCCEEeccc
Q 014145 168 LRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS--------EENFFLTD-QIQPLFDEKVAF--PQLRYLELSR 232 (430)
Q Consensus 168 L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~--------~~~l~~~~-~~~~~~~~~~~~--~~L~~L~l~~ 232 (430)
|++|++.+|. ++.++ .++|+.|++++|.+..+.. ++.|.+.+ ....+-...... ++|+.|++++
T Consensus 575 L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~ 653 (876)
T 4ecn_A 575 LGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY 653 (876)
T ss_dssp CCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCS
T ss_pred CCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcC
Confidence 9999999986 55554 5689999999998765441 22222211 111111111222 2366666665
Q ss_pred CCCceeeccCCchhhh--hcccccEEEeecCCCcccccCCcc-cCCCCCEEEEccCCCcccccCchh------hcccccc
Q 014145 233 LHKVQHLWKENDESNK--AFANLIRLKISECSKLQKLVTPSW-HLENLATLEVSKCHGLINVLTLST------SESLVNL 303 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~l~-~l~~L~~L~l~~c~~l~~l~~~~~------~~~l~~L 303 (430)
+ .+....+....... .+++|+.|+++++. +..+|..+. .+++|+.|++++| .+..++...+ .+++++|
T Consensus 654 N-~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L 730 (876)
T 4ecn_A 654 N-KIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLL 730 (876)
T ss_dssp S-CTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGC
T ss_pred C-cCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCc
Confidence 4 22221111000001 23467777777653 445554443 5677777777775 3445543211 1123477
Q ss_pred ceEeeccccccchhhcccccccCCcce--eecccceEeccCCCCCceeccCCcccCCCCccEEeecc------CCCCccc
Q 014145 304 GRMKIADCKMIEQIIQLQVGEEAKGCV--VFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ------CPTMKIF 375 (430)
Q Consensus 304 ~~L~l~~c~~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~------c~~l~~~ 375 (430)
+.|++++|. +..++. ... .+++|+.|+++++ .++.++. ....+++|+.|++++ |.....+
T Consensus 731 ~~L~Ls~N~-L~~lp~--------~l~~~~l~~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~i 798 (876)
T 4ecn_A 731 TTIDLRFNK-LTSLSD--------DFRATTLPYLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQW 798 (876)
T ss_dssp CEEECCSSC-CCCCCG--------GGSTTTCTTCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCC
T ss_pred cEEECCCCC-CccchH--------HhhhccCCCcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCCCcccccccccC
Confidence 777777763 333321 111 3677888888775 5555554 233578888888865 3334566
Q ss_pred CCCCcCCCCceeeeccccCC
Q 014145 376 SQGVVDAPKLNKVKPTEEED 395 (430)
Q Consensus 376 ~~~~~~~~~L~~l~l~~~~~ 395 (430)
|..+..+++|++|++.++..
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC
T ss_pred hHHHhcCCCCCEEECCCCCC
Confidence 76677788888888876653
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-19 Score=171.14 Aligned_cols=269 Identities=15% Similarity=0.166 Sum_probs=201.7
Q ss_pred hhhhhhh-cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 39 TIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 39 ~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
.+..++. .+..+++|++|+++++. +..+.... ...+++|++|+++++ .+..+ |...+..+++|++|++++|.
T Consensus 80 ~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~L~~n~- 152 (390)
T 3o6n_A 80 QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNN- 152 (390)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred cccccChhhccCCCCcCEEECCCCC-CCcCCHHH---hcCCCCCCEEECCCC-ccCcC-CHHHhcCCCCCcEEECCCCc-
Confidence 3444443 46678999999999887 66543221 257899999999998 46654 44446789999999999984
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-CCCceEEEecCCC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-SNSVVHVTTDNKE 196 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~L~~L~l~~~~ 196 (430)
+..+ +...+..+++|++|+++++ .+..++ ...+++|++|++.++. ++.++ +.+++.|++++|.
T Consensus 153 l~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~-----~~~l~~L~~L~l~~n~-l~~~~~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 153 LERI---------EDDTFQATTSLQNLQLSSN-RLTHVD-----LSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHNS 216 (390)
T ss_dssp CCBC---------CTTTTSSCTTCCEEECCSS-CCSBCC-----GGGCTTCSEEECCSSC-CSEEECCSSCSEEECCSSC
T ss_pred cCcc---------ChhhccCCCCCCEEECCCC-cCCccc-----cccccccceeeccccc-ccccCCCCcceEEECCCCe
Confidence 5554 3444588999999999986 444442 5678999999999875 66555 7799999999999
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+..+. ...+++|+.|+++++ .++.. ..+ ..+++|++|+++++......|..+..+++
T Consensus 217 l~~~~-----------------~~~~~~L~~L~l~~n-~l~~~--~~l---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 217 INVVR-----------------GPVNVELTILKLQHN-NLTDT--AWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CCEEE-----------------CCCCSSCCEEECCSS-CCCCC--GGG---GGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred eeecc-----------------ccccccccEEECCCC-CCccc--HHH---cCCCCccEEECCCCcCCCcChhHcccccc
Confidence 87754 244679999999996 55553 223 78899999999998554455667788999
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|++|+++++ .+..++. ....+++|++|++++|. +..++. ....+++|++|++.++ .++.++. .
T Consensus 274 L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~N-~i~~~~~----~ 336 (390)
T 3o6n_A 274 LERLYISNN-RLVALNL--YGQPIPTLKVLDLSHNH-LLHVER--------NQPQFDRLENLYLDHN-SIVTLKL----S 336 (390)
T ss_dssp CCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSSC-CCCCGG--------GHHHHTTCSEEECCSS-CCCCCCC----C
T ss_pred CCEEECCCC-cCcccCc--ccCCCCCCCEEECCCCc-ceecCc--------cccccCcCCEEECCCC-ccceeCc----h
Confidence 999999996 4666654 34678999999999984 444431 2234899999999997 4676654 2
Q ss_pred CCCCccEEeeccCC
Q 014145 357 EFPSLEHVVVRQCP 370 (430)
Q Consensus 357 ~~~~L~~L~l~~c~ 370 (430)
.+++|++|++.+++
T Consensus 337 ~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 337 THHTLKNLTLSHND 350 (390)
T ss_dssp TTCCCSEEECCSSC
T ss_pred hhccCCEEEcCCCC
Confidence 38999999999875
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=178.06 Aligned_cols=159 Identities=16% Similarity=0.104 Sum_probs=89.6
Q ss_pred CCCCCCCCEEecccCCCceeecc-CCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCccc-ccCchh
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN-VLTLST 296 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~-l~~~~~ 296 (430)
...+++|+.|+++++ .+....+ ..+ ..+++|+.|++++|......|..+..+++|++|++++|.-... ++. .
T Consensus 395 ~~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~ 468 (606)
T 3vq2_A 395 FMGLEELQHLDFQHS-TLKRVTEFSAF---LSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN--V 468 (606)
T ss_dssp CTTCTTCCEEECTTS-EEESTTTTTTT---TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS--C
T ss_pred ccCCCCCCeeECCCC-ccCCccChhhh---hccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH--h
Confidence 344555555555553 2333222 222 4556666666666554444455555666666666666532221 221 2
Q ss_pred hccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccC
Q 014145 297 SESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS 376 (430)
Q Consensus 297 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 376 (430)
++.+++|++|++++|.. ..+.. .....+++|++|+++++ .++.+... ....+++|++|++++|. ++.+|
T Consensus 469 ~~~l~~L~~L~Ls~n~l-~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p 537 (606)
T 3vq2_A 469 FANTTNLTFLDLSKCQL-EQISW-------GVFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSK 537 (606)
T ss_dssp CTTCTTCCEEECTTSCC-CEECT-------TTTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEE
T ss_pred hccCCCCCEEECCCCcC-CccCh-------hhhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccC
Confidence 45566777777766632 22210 11223677888888877 44444221 23457888888888874 66777
Q ss_pred CCCcCCC-CceeeeccccC
Q 014145 377 QGVVDAP-KLNKVKPTEEE 394 (430)
Q Consensus 377 ~~~~~~~-~L~~l~l~~~~ 394 (430)
.....++ +|+++++.+++
T Consensus 538 ~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp SCGGGSCTTCCEEECCSCC
T ss_pred HhHhhhcccCcEEEccCCC
Confidence 7766666 58888887654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-18 Score=178.15 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=87.7
Q ss_pred CCCCCEEecccCCCceeecc---CCchhhhhcccccEEEeecCCCccccc---CCcccCCCCCEEEEccCCCcccccCch
Q 014145 222 FPQLRYLELSRLHKVQHLWK---ENDESNKAFANLIRLKISECSKLQKLV---TPSWHLENLATLEVSKCHGLINVLTLS 295 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~---~~~~~~~~l~~L~~L~l~~c~~l~~l~---~~l~~l~~L~~L~l~~c~~l~~l~~~~ 295 (430)
+++|+.|+++++. +....+ ..+ ..+++|+.|+++++. ++.++ ..+..+++|++|++++| .++.+|.
T Consensus 333 l~~L~~L~Ls~N~-l~~~~~~~~~~~---~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-- 404 (549)
T 2z81_A 333 LKSLEFLDLSENL-MVEEYLKNSACK---GAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD-- 404 (549)
T ss_dssp CTTCCEEECCSSC-CCHHHHHHHTCT---TSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS--
T ss_pred CccccEEEccCCc-cccccccchhhh---hccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccCCh--
Confidence 5666777776642 322111 111 455666777766653 33332 12445666666666665 3444443
Q ss_pred hhccccccceEeeccccccchhhcccc----------cccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEe
Q 014145 296 TSESLVNLGRMKIADCKMIEQIIQLQV----------GEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVV 365 (430)
Q Consensus 296 ~~~~l~~L~~L~l~~c~~l~~~~~~~~----------~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~ 365 (430)
.++.+++|++|++++|. +..+..... .........+++|++|+++++ .++.++.. ..+++|++|+
T Consensus 405 ~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N-~l~~ip~~---~~l~~L~~L~ 479 (549)
T 2z81_A 405 SCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN-KLKTLPDA---SLFPVLLVMK 479 (549)
T ss_dssp CCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS-CCSSCCCG---GGCTTCCEEE
T ss_pred hhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEECCCC-ccCcCCCc---ccCccCCEEe
Confidence 23445566666665543 222110000 000000113678888888876 66666642 2478999999
Q ss_pred eccCCCCcccCC-CCcCCCCceeeeccccC
Q 014145 366 VRQCPTMKIFSQ-GVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 366 l~~c~~l~~~~~-~~~~~~~L~~l~l~~~~ 394 (430)
+++| .++.++. .+..+++|+.+++.+++
T Consensus 480 Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 480 ISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 9887 5555554 36678999999997765
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=173.71 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=116.3
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcc--cccCCcccCCCCCEEEEccCCCcccccCchhh
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ--KLVTPSWHLENLATLEVSKCHGLINVLTLSTS 297 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~--~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 297 (430)
..+++|++|+++++ .+....+..+ ..+++|+.|+++++.... .+|..+..+++|++|++++|.-...++.. .+
T Consensus 321 ~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-~~ 395 (520)
T 2z7x_B 321 SKISPFLHLDFSNN-LLTDTVFENC---GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG-DC 395 (520)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC---CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-SC
T ss_pred hhCCcccEEEeECC-ccChhhhhhh---ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc-hh
Confidence 57889999999996 5555334444 788999999999975433 45556778999999999997533325532 24
Q ss_pred ccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCC
Q 014145 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 377 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 377 (430)
..+++|++|++++|.....++.. ..++|++|+++++ .++.++.. ...+++|++|++++| .++.+|.
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~----------l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRC----------LPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGS----------CCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-CCCCCCT
T ss_pred ccCccCCEEECcCCCCCcchhhh----------hcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-cCCccCH
Confidence 66789999999998643333311 1279999999997 77777763 336899999999997 6778887
Q ss_pred C-CcCCCCceeeeccccC
Q 014145 378 G-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 378 ~-~~~~~~L~~l~l~~~~ 394 (430)
. +..+++|+++++.+++
T Consensus 462 ~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 462 GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhccCCcccEEECcCCC
Confidence 6 6788999999996654
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=166.00 Aligned_cols=219 Identities=18% Similarity=0.229 Sum_probs=127.0
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++++.|+++++. ++.++... ..+++|++|+++++. +..+ |.. +..+++|++|++++|. +..+
T Consensus 79 ~~~~l~~L~L~~n~-l~~lp~~l----~~l~~L~~L~L~~n~-l~~l-p~~-~~~l~~L~~L~Ls~n~-l~~l------- 142 (328)
T 4fcg_A 79 TQPGRVALELRSVP-LPQFPDQA----FRLSHLQHMTIDAAG-LMEL-PDT-MQQFAGLETLTLARNP-LRAL------- 142 (328)
T ss_dssp TSTTCCEEEEESSC-CSSCCSCG----GGGTTCSEEEEESSC-CCCC-CSC-GGGGTTCSEEEEESCC-CCCC-------
T ss_pred cccceeEEEccCCC-chhcChhh----hhCCCCCEEECCCCC-ccch-hHH-HhccCCCCEEECCCCc-cccC-------
Confidence 45789999999876 66655444 568899999999874 5543 433 6789999999999984 5555
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccc------cccCCCccEEEeccCCCccccc-----CCCceEEEecCCCC
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN------IIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEP 197 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~------~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~ 197 (430)
|..+ ..+++|++|++++|..+..+|..... +..+++|++|++.+|. ++.++ .++|+.|++++|.+
T Consensus 143 --p~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 143 --PASI-ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp --CGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCC
T ss_pred --cHHH-hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCC
Confidence 5554 78899999999998877777654210 2247788888887764 44333 23445555555444
Q ss_pred CcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCC
Q 014145 198 EKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENL 277 (430)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L 277 (430)
.++. ...+.+++|++|++++|.....+ +..+ ..+++|+.|++++|+....+|..+..+++|
T Consensus 219 ~~l~---------------~~l~~l~~L~~L~Ls~n~~~~~~-p~~~---~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 219 SALG---------------PAIHHLPKLEELDLRGCTALRNY-PPIF---GGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp CCCC---------------GGGGGCTTCCEEECTTCTTCCBC-CCCT---TCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred CcCc---------------hhhccCCCCCEEECcCCcchhhh-HHHh---cCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 4332 12234444555555544333322 2222 344445555555444444444444444455
Q ss_pred CEEEEccCCCcccccCchhhccccccceEee
Q 014145 278 ATLEVSKCHGLINVLTLSTSESLVNLGRMKI 308 (430)
Q Consensus 278 ~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l 308 (430)
+.|++++|+.+..+|. .++.+++|+.+++
T Consensus 280 ~~L~L~~n~~~~~iP~--~l~~L~~L~~l~l 308 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPS--LIAQLPANCIILV 308 (328)
T ss_dssp CEEECTTCTTCCCCCG--GGGGSCTTCEEEC
T ss_pred CEEeCCCCCchhhccH--HHhhccCceEEeC
Confidence 5555554444444443 2344444444444
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-18 Score=177.59 Aligned_cols=264 Identities=17% Similarity=0.145 Sum_probs=191.7
Q ss_pred hhhhhhh-cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 39 TIQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 39 ~~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
.+..++. .+..+++|++|+++++. +..+.... .+.+++|++|++++| .+..+ |...+.++++|++|++++|.
T Consensus 86 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~~L~~L~Ls~N~- 158 (597)
T 3oja_B 86 QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHV---FQNVPLLTVLVLERN-DLSSL-PRGIFHNTPKLTTLSMSNNN- 158 (597)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHH---HcCCCCCCEEEeeCC-CCCCC-CHHHhccCCCCCEEEeeCCc-
Confidence 3444443 56688999999999887 66543322 257899999999998 46664 44446789999999999984
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-CCCceEEEecCCC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-SNSVVHVTTDNKE 196 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~L~~L~l~~~~ 196 (430)
+..+ +...+..+++|++|+++++ .+..++ ...+++|+.|++.++. ++.++ +.+|+.|++++|.
T Consensus 159 l~~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~-----~~~l~~L~~L~l~~n~-l~~l~~~~~L~~L~ls~n~ 222 (597)
T 3oja_B 159 LERI---------EDDTFQATTSLQNLQLSSN-RLTHVD-----LSLIPSLFHANVSYNL-LSTLAIPIAVEELDASHNS 222 (597)
T ss_dssp CCBC---------CTTTTTTCTTCCEEECTTS-CCSBCC-----GGGCTTCSEEECCSSC-CSEEECCTTCSEEECCSSC
T ss_pred CCCC---------ChhhhhcCCcCcEEECcCC-CCCCcC-----hhhhhhhhhhhcccCc-cccccCCchhheeeccCCc
Confidence 5555 3444588999999999986 444442 5678899999998875 55544 6788888888887
Q ss_pred CCccc-----CCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc
Q 014145 197 PEKLT-----SEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 197 ~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l 271 (430)
+..+. +++.+.+.+..-......+.+++|+.|+++++ .+..+.+..+ ..+++|+.|+++++ .+..+|...
T Consensus 223 l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~ 297 (597)
T 3oja_B 223 INVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF---VKMQRLERLYISNN-RLVALNLYG 297 (597)
T ss_dssp CCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEESGGG---TTCSSCCEEECTTS-CCCEEECSS
T ss_pred ccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCCHHHh---cCccCCCEEECCCC-CCCCCCccc
Confidence 65432 23333332211111234677899999999996 6777656665 78999999999996 567778777
Q ss_pred ccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCC
Q 014145 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
..+++|+.|++++|. +..++. .+..+++|++|++++|.. ..+. ...+++|++|++.+++
T Consensus 298 ~~l~~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L~~N~l-~~~~----------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 298 QPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLDHNSI-VTLK----------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECCSSCC-CCCC----------CCTTCCCSEEECCSSC
T ss_pred ccCCCCcEEECCCCC-CCccCc--ccccCCCCCEEECCCCCC-CCcC----------hhhcCCCCEEEeeCCC
Confidence 789999999999974 566654 357899999999999763 3332 2237899999999875
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-18 Score=168.54 Aligned_cols=291 Identities=13% Similarity=0.199 Sum_probs=190.8
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. ++.+.. . ..+++|++|++++| .+...++ +.++++|++|++++| .+..+
T Consensus 64 ~~~l~~L~~L~Ls~n~-l~~~~~-~----~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~----- 127 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQ-LTDITP-L----KNLTKLVDILMNNN-QIADITP---LANLTNLTGLTLFNN-QITDI----- 127 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGG-G----TTCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC-----
T ss_pred hhhhcCCCEEECCCCc-cCCchh-h----hccccCCEEECCCC-ccccChh---hcCCCCCCEEECCCC-CCCCC-----
Confidence 5568889999988876 665433 2 57888999999887 3555433 567889999999888 45554
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~ 202 (430)
+. +..+++|++|+++++ .+..++. +..+++|++|.+.+. +...+ .++|+.|++++|.+..+..
T Consensus 128 ----~~--~~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (466)
T 1o6v_A 128 ----DP--LKNLTNLNRLELSSN-TISDISA----LSGLTSLQQLSFGNQ--VTDLKPLANLTTLERLDISSNKVSDISV 194 (466)
T ss_dssp ----GG--GTTCTTCSEEEEEEE-EECCCGG----GTTCTTCSEEEEEES--CCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred ----hH--HcCCCCCCEEECCCC-ccCCChh----hccCCcccEeecCCc--ccCchhhccCCCCCEEECcCCcCCCChh
Confidence 22 377889999999886 3444432 678889999988642 33222 5689999999998665432
Q ss_pred ---CCcee---eecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 203 ---EENFF---LTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 203 ---~~~l~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+++++ +.+..-......+.+++|+.|+++++ .++.+. .+ ..+++|+.|+++++. +..++. +..+++
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~--~l---~~l~~L~~L~l~~n~-l~~~~~-~~~l~~ 266 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIG--TL---ASLTNLTDLDLANNQ-ISNLAP-LSGLTK 266 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG--GG---GGCTTCSEEECCSSC-CCCCGG-GTTCTT
T ss_pred hccCCCCCEEEecCCcccccccccccCCCCEEECCCC-Ccccch--hh---hcCCCCCEEECCCCc-cccchh-hhcCCC
Confidence 22222 22111111112455777888888775 444431 22 667888888888764 333332 567788
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|+.|++++|. +..++. +..+++|++|++++|. +..+. ....+++|++|++.++ .++.+.. ..
T Consensus 267 L~~L~l~~n~-l~~~~~---~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~L~~n-~l~~~~~---~~ 328 (466)
T 1o6v_A 267 LTELKLGANQ-ISNISP---LAGLTALTNLELNENQ-LEDIS---------PISNLKNLTYLTLYFN-NISDISP---VS 328 (466)
T ss_dssp CSEEECCSSC-CCCCGG---GTTCTTCSEEECCSSC-CSCCG---------GGGGCTTCSEEECCSS-CCSCCGG---GG
T ss_pred CCEEECCCCc-cCcccc---ccCCCccCeEEcCCCc-ccCch---------hhcCCCCCCEEECcCC-cCCCchh---hc
Confidence 8888888763 444443 5667888888888764 33332 1223788899999887 4555443 23
Q ss_pred CCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 357 EFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 357 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
.+++|++|++.+| .++.++ ....+++|+.+++.++.
T Consensus 329 ~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 329 SLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSC
T ss_pred cCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCCc
Confidence 4789999999887 455553 35578899999997654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.8e-18 Score=169.09 Aligned_cols=272 Identities=14% Similarity=0.083 Sum_probs=155.4
Q ss_pred cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccc
Q 014145 46 EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 46 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 125 (430)
++..+++|++|+++++. ++.+ +...+++|++|++++|. +..+ + +.++++|++|++++| .+..+
T Consensus 59 ~l~~l~~L~~L~Ls~n~-l~~~------~~~~l~~L~~L~Ls~N~-l~~~-~---~~~l~~L~~L~L~~N-~l~~l---- 121 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNN-ITTL------DLSQNTNLTYLACDSNK-LTNL-D---VTPLTKLTYLNCDTN-KLTKL---- 121 (457)
T ss_dssp TGGGCTTCSEEECCSSC-CSCC------CCTTCTTCSEEECCSSC-CSCC-C---CTTCTTCCEEECCSS-CCSCC----
T ss_pred hhcccCCCCEEEccCCc-CCeE------ccccCCCCCEEECcCCC-Ccee-e---cCCCCcCCEEECCCC-cCCee----
Confidence 34556666666666654 5542 22456666666666653 4442 2 345666666666666 33333
Q ss_pred cccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccC
Q 014145 126 ELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 126 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~ 202 (430)
+ +..+++|++|+++++ .+..++ +..+++|++|++.+|..+..++ .++|+.|++++|.+.++.
T Consensus 122 -----~---~~~l~~L~~L~l~~N-~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 122 -----D---VSQNPLLTYLNCARN-TLTEID-----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp -----C---CTTCTTCCEEECTTS-CCSCCC-----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-
T ss_pred -----c---CCCCCcCCEEECCCC-ccceec-----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-
Confidence 1 255667777777664 333331 4566677777777665454433 456677777776655532
Q ss_pred CCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEE
Q 014145 203 EENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEV 282 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l 282 (430)
.+.+++|+.|+++++ .++.+. + ..+++|+.|+++++ .+..+| +..+++|+.|++
T Consensus 187 ----------------l~~l~~L~~L~l~~N-~l~~~~---l---~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l 240 (457)
T 3bz5_A 187 ----------------VSQNKLLNRLNCDTN-NITKLD---L---NQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDC 240 (457)
T ss_dssp ----------------CTTCTTCCEEECCSS-CCSCCC---C---TTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEEC
T ss_pred ----------------cccCCCCCEEECcCC-cCCeec---c---ccCCCCCEEECcCC-cccccC--ccccCCCCEEEe
Confidence 456677888888774 455441 2 66778888888775 344555 567778888888
Q ss_pred ccCCCcccccCchhhccccccceEee----------ccccccchhhcccccccCCcceeecccceEeccCCCCCceeccC
Q 014145 283 SKCHGLINVLTLSTSESLVNLGRMKI----------ADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 283 ~~c~~l~~l~~~~~~~~l~~L~~L~l----------~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 352 (430)
+++ .+..++ .+.+++|+.|++ ++|..+..++. ..+++|+.|++++|+.+..++..
T Consensus 241 ~~N-~l~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~----------~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 241 SVN-PLTELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA----------EGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp CSS-CCSCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC----------TTCTTCCCCCCTTCTTCCEEECT
T ss_pred eCC-cCCCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCcccc----------cccccCCEEECCCCcccceeccC
Confidence 775 344443 234444544443 33332222221 12577888888887766665531
Q ss_pred C------cccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 353 N------YALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 353 ~------~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
. ....+++|++|+++++ +++.++ +..+++|+.+++.+.
T Consensus 306 ~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 306 AAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSS
T ss_pred CCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCC
Confidence 1 0123456666666554 344443 456778888887553
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-18 Score=168.47 Aligned_cols=273 Identities=14% Similarity=0.088 Sum_probs=203.4
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
...++++.|+++++ ++..+.+.. +.++++|++|++++| .+..+ +...+..+++|++|+++++ .+..+
T Consensus 29 ~~~~~l~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~ 95 (477)
T 2id5_A 29 GIPTETRLLDLGKN-RIKTLNQDE-FASFPHLEELELNEN-IVSAV---------EPGAFNNLFNLRTLGLRSN-RLKLI 95 (477)
T ss_dssp CCCTTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECTTS-CCCEE---------CTTTTTTCTTCCEEECCSS-CCCSC
T ss_pred CCCCCCcEEECCCC-ccceECHhH-ccCCCCCCEEECCCC-ccCEe---------ChhhhhCCccCCEEECCCC-cCCcc
Confidence 34578999999997 466654443 788999999999998 56666 3344588999999999986 56666
Q ss_pred cCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEe
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLE 229 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 229 (430)
+.. .+..+++|++|++.++. ++... .++|+.|++++|.+..+.+ ..+..+++|++|+
T Consensus 96 ~~~--~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------~~~~~l~~L~~L~ 158 (477)
T 2id5_A 96 PLG--VFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISH--------------RAFSGLNSLEQLT 158 (477)
T ss_dssp CTT--SSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECT--------------TSSTTCTTCCEEE
T ss_pred Ccc--cccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeCh--------------hhccCCCCCCEEE
Confidence 543 25689999999999986 44432 5689999999998776541 2356789999999
Q ss_pred cccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeec
Q 014145 230 LSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 230 l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 309 (430)
++++ .++.+....+ ..+++|+.|++.++......+..+..+++|+.|++++|..+..++.. .....+|++|+++
T Consensus 159 l~~n-~l~~~~~~~l---~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~ 232 (477)
T 2id5_A 159 LEKC-NLTSIPTEAL---SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN--CLYGLNLTSLSIT 232 (477)
T ss_dssp EESC-CCSSCCHHHH---TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT--TTTTCCCSEEEEE
T ss_pred CCCC-cCcccChhHh---cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc--cccCccccEEECc
Confidence 9996 5666554444 77899999999997544433445778999999999999888887653 3344589999999
Q ss_pred cccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeee
Q 014145 310 DCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVK 389 (430)
Q Consensus 310 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~ 389 (430)
+|. +..+... ....+++|++|+++++ .++.++.. ....+++|++|++.++.-....+..+..+++|++|+
T Consensus 233 ~n~-l~~~~~~-------~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 233 HCN-LTAVPYL-------AVRHLVYLRFLNLSYN-PISTIEGS-MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp SSC-CCSCCHH-------HHTTCTTCCEEECCSS-CCCEECTT-SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred CCc-ccccCHH-------HhcCccccCeeECCCC-cCCccChh-hccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 874 4443211 1123789999999987 47777642 234689999999999855444566677899999999
Q ss_pred ccccC
Q 014145 390 PTEEE 394 (430)
Q Consensus 390 l~~~~ 394 (430)
+.++.
T Consensus 303 L~~N~ 307 (477)
T 2id5_A 303 VSGNQ 307 (477)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 97753
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=7.3e-18 Score=172.49 Aligned_cols=135 Identities=17% Similarity=0.125 Sum_probs=77.8
Q ss_pred hhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccC
Q 014145 248 KAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|+.|+++++......+ ..+..+++|+.|++++|.-....+. .+..+++|++|++++|...... .+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-------~p 463 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENF-------LP 463 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCCEEECTTCEEGGGE-------EC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh--hhhcCCcCcEEECcCCcCcccc-------ch
Confidence 444555555555543222222 2344566666666666542222221 2455677777777766432111 11
Q ss_pred CcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccC-CCCcCCCCceeeeccccC
Q 014145 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFS-QGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~l~l~~~~ 394 (430)
.....+++|++|++.+| .++.+... ....+++|++|++++| .++.++ ..+..+++|+++++.+++
T Consensus 464 ~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp SCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhcccCCCEEECCCC-ccccCChh-hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 12233788899999887 55655331 2345889999999987 455554 446678999999996654
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=170.86 Aligned_cols=153 Identities=13% Similarity=0.137 Sum_probs=109.6
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcc---cccCCcccCCCCCEEEEccCCCccc-ccCch
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ---KLVTPSWHLENLATLEVSKCHGLIN-VLTLS 295 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~---~l~~~l~~l~~L~~L~l~~c~~l~~-l~~~~ 295 (430)
..+++|++|+++++ .++...+..+ ..+++|+.|+++++. +. .+|..+..+++|+.|+++++. +.. ++..
T Consensus 350 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~- 422 (562)
T 3a79_B 350 PSPSSFTFLNFTQN-VFTDSVFQGC---STLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDR- 422 (562)
T ss_dssp SSCCCCCEEECCSS-CCCTTTTTTC---CSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSC-
T ss_pred cCCCCceEEECCCC-ccccchhhhh---cccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCc-CCCccChh-
Confidence 56778888888885 4554334444 677888888888863 44 334456778888888888875 443 5432
Q ss_pred hhccccccceEeeccccccchhhcccccccCCcceee-cccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcc
Q 014145 296 TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 296 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 374 (430)
.+..+++|++|+++++..-..++. .+ ++|++|+++++ .++.++.+. ..+++|++|+++++ .++.
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~-----------~l~~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~ 487 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFR-----------CLPPKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKS 487 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGS-----------SCCTTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCC
T ss_pred hhcCcccCCEEECCCCCCCcchhh-----------hhcCcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCC
Confidence 345678888898888754333321 13 68999999987 788887643 36899999999986 6678
Q ss_pred cCCC-CcCCCCceeeeccccC
Q 014145 375 FSQG-VVDAPKLNKVKPTEEE 394 (430)
Q Consensus 375 ~~~~-~~~~~~L~~l~l~~~~ 394 (430)
+|.. +..+++|+.+++.+++
T Consensus 488 l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 488 VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCTTSTTTCTTCCCEECCSCC
T ss_pred CCHHHHhcCCCCCEEEecCCC
Confidence 8877 7789999999997654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=178.49 Aligned_cols=133 Identities=14% Similarity=0.208 Sum_probs=83.8
Q ss_pred cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccc
Q 014145 46 EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLE 125 (430)
Q Consensus 46 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 125 (430)
.+..+++|++|+++++. +..+.... ...+++|++|+++++. +..+++.. +.++++|++|++++| .+..+
T Consensus 47 ~~~~l~~L~~L~Ls~n~-i~~i~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l---- 115 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGNP-IQSLALGA-FSGLSSLQKLVAVET-NLASL---- 115 (570)
T ss_dssp TTTTCSSCCEEECTTCC-CCEECTTT---TTTCTTCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTS-CCCCS----
T ss_pred HhhCCCCceEEECCCCc-CCccCccc---ccCchhCCEEeCcCCc-CCccCHhh-hcCcccccccccccc-ccccC----
Confidence 35567888888888775 66543322 1467888888888863 55544333 667888888888887 35544
Q ss_pred cccCCccCcCCcCCccceeecCCcccccc--ccCCccccccCCCccEEEeccCCCcccccC------CCc----eEEEec
Q 014145 126 ELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFIS------NSV----VHVTTD 193 (430)
Q Consensus 126 ~~~~~~~~l~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~------~~L----~~L~l~ 193 (430)
+...+..+++|++|+++++. +.. +|.. +..+++|++|++.++. ++..++ ..+ +.++++
T Consensus 116 -----~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~---~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 116 -----ENFPIGHLKTLKELNVAHNL-IQSFKLPEY---FSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp -----TTCSCTTCTTCCEEECCSSC-CCCCCCCGG---GGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECT
T ss_pred -----CCccccccccccEEecCCCc-cceecChhh---hcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccC
Confidence 23224778888888888763 332 3332 6678888888888775 443321 123 566666
Q ss_pred CCCCCc
Q 014145 194 NKEPEK 199 (430)
Q Consensus 194 ~~~~~~ 199 (430)
+|.+..
T Consensus 186 ~n~l~~ 191 (570)
T 2z63_A 186 LNPMNF 191 (570)
T ss_dssp TCCCCE
T ss_pred CCCcee
Confidence 665443
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=176.87 Aligned_cols=109 Identities=16% Similarity=0.162 Sum_probs=52.3
Q ss_pred CCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceecc-CCc
Q 014145 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL-GNY 354 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~-~~~ 354 (430)
+|++|+++++. +..++.. +.+.+++|++|+++++.....++... . ....+++|++|+++++ .++.++. +..
T Consensus 311 ~L~~L~l~~n~-l~~ip~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~-~----~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 382 (549)
T 2z81_A 311 KVKRITVENSK-VFLVPCS-FSQHLKSLEFLDLSENLMVEEYLKNS-A----CKGAWPSLQTLVLSQN-HLRSMQKTGEI 382 (549)
T ss_dssp TCCEEEEESSC-CCCCCHH-HHHHCTTCCEEECCSSCCCHHHHHHH-T----CTTSSTTCCEEECTTS-CCCCHHHHHHH
T ss_pred cceEEEeccCc-cccCCHH-HHhcCccccEEEccCCccccccccch-h----hhhccccCcEEEccCC-cccccccchhh
Confidence 44555555432 3333321 22456777777777765433222100 0 0112566666666664 4444321 111
Q ss_pred ccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 355 ALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
...+++|++|++++| .++.+|.....+++|++|++.++
T Consensus 383 ~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N 420 (549)
T 2z81_A 383 LLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST 420 (549)
T ss_dssp GGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTS
T ss_pred hhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCC
Confidence 223566666666665 44455555555555666665443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=177.75 Aligned_cols=134 Identities=11% Similarity=0.130 Sum_probs=80.2
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. +..+.... ...+++|++|++++| .+..+++ ..+.++++|++|++++|. +..+
T Consensus 45 ~~~l~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~l~~-~~~~~l~~L~~L~L~~n~-l~~~----- 112 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNT-ISKLEPEL---CQKLPMLKVLNLQHN-ELSQLSD-KTFAFCTNLTELHLMSNS-IQKI----- 112 (680)
T ss_dssp GGGGTTCSEEECCSSC-CCCCCTTH---HHHCTTCCEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCC-----
T ss_pred HhCCCcCcEEECCCCc-cCccCHHH---HhcccCcCEEECCCC-ccCccCh-hhhccCCCCCEEECCCCc-cCcc-----
Confidence 4556777777777665 44422111 135677777777776 3554333 235667777777777773 4444
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--------CCCceEEEecCCCCC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--------SNSVVHVTTDNKEPE 198 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--------~~~L~~L~l~~~~~~ 198 (430)
+...+..+++|++|+++++......+.. +..+++|++|++.++. ++..+ ..+|+.|++++|.+.
T Consensus 113 ----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 113 ----KNNPFVKQKNLITLDLSHNGLSSTKLGT---QVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp ----CSCTTTTCTTCCEEECCSSCCSCCCCCS---SSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred ----ChhHccccCCCCEEECCCCcccccCchh---hcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCccc
Confidence 3333477788888888776432222221 5567788888887764 33332 256788888777655
Q ss_pred cc
Q 014145 199 KL 200 (430)
Q Consensus 199 ~~ 200 (430)
++
T Consensus 185 ~~ 186 (680)
T 1ziw_A 185 EF 186 (680)
T ss_dssp CB
T ss_pred cc
Confidence 43
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-18 Score=167.60 Aligned_cols=250 Identities=16% Similarity=0.147 Sum_probs=179.4
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
+..+++|++|+++++. ++.+ +...+++|++|+++++ .+..+ + +..+++|++|++++|. +..+
T Consensus 81 ~~~l~~L~~L~Ls~N~-l~~~------~~~~l~~L~~L~L~~N-~l~~l-~---~~~l~~L~~L~l~~N~-l~~l----- 142 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNK-LTNL------DVTPLTKLTYLNCDTN-KLTKL-D---VSQNPLLTYLNCARNT-LTEI----- 142 (457)
T ss_dssp CTTCTTCSEEECCSSC-CSCC------CCTTCTTCCEEECCSS-CCSCC-C---CTTCTTCCEEECTTSC-CSCC-----
T ss_pred cccCCCCCEEECcCCC-Ccee------ecCCCCcCCEEECCCC-cCCee-c---CCCCCcCCEEECCCCc-ccee-----
Confidence 6688999999999887 7663 2367999999999998 46654 3 5679999999999984 5444
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSE 203 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~ 203 (430)
+ +..+++|++|+++++..+..++ +..+++|++|++.+|. ++.++ .++|+.|++++|.+..+.
T Consensus 143 ----~---l~~l~~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~~N~l~~~~-- 207 (457)
T 3bz5_A 143 ----D---VSHNTQLTELDCHLNKKITKLD-----VTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTNNITKLD-- 207 (457)
T ss_dssp ----C---CTTCTTCCEEECTTCSCCCCCC-----CTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECCSSCCSCCC--
T ss_pred ----c---cccCCcCCEEECCCCCcccccc-----cccCCcCCEEECCCCc-cceeccccCCCCCEEECcCCcCCeec--
Confidence 1 3678999999999987776662 6688999999999885 66655 568999999999877643
Q ss_pred CceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCC------
Q 014145 204 ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENL------ 277 (430)
Q Consensus 204 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L------ 277 (430)
.+.+++|+.|+++++ .++.++ + ..+++|+.|+++++. +..++ ...+++|
T Consensus 208 ---------------l~~l~~L~~L~Ls~N-~l~~ip---~---~~l~~L~~L~l~~N~-l~~~~--~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 208 ---------------LNQNIQLTFLDCSSN-KLTEID---V---TPLTQLTYFDCSVNP-LTELD--VSTLSKLTTLHCI 262 (457)
T ss_dssp ---------------CTTCTTCSEEECCSS-CCSCCC---C---TTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECT
T ss_pred ---------------cccCCCCCEEECcCC-cccccC---c---cccCCCCEEEeeCCc-CCCcC--HHHCCCCCEEecc
Confidence 567899999999985 566653 3 678999999999864 44444 2344444
Q ss_pred ----CEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCC
Q 014145 278 ----ATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN 353 (430)
Q Consensus 278 ----~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~ 353 (430)
+.|++++|..+..++ .+.+++|++|++++|..++.++.. .++|+.|+++++++|+.+....
T Consensus 263 ~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~-----------~~~L~~L~l~~~~~L~~L~L~~ 327 (457)
T 3bz5_A 263 QTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQ-----------AAGITELDLSQNPKLVYLYLNN 327 (457)
T ss_dssp TCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECT-----------TCCCSCCCCTTCTTCCEEECTT
T ss_pred CCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccC-----------CCcceEechhhcccCCEEECCC
Confidence 555566665555554 356789999999999877766521 2344444555555444443211
Q ss_pred ------cccCCCCccEEeeccC
Q 014145 354 ------YALEFPSLEHVVVRQC 369 (430)
Q Consensus 354 ------~~~~~~~L~~L~l~~c 369 (430)
....+++|+.|+++++
T Consensus 328 N~l~~l~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 328 TELTELDVSHNTKLKSLSCVNA 349 (457)
T ss_dssp CCCSCCCCTTCTTCSEEECCSS
T ss_pred CcccccccccCCcCcEEECCCC
Confidence 1234788888888764
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-17 Score=168.71 Aligned_cols=133 Identities=14% Similarity=0.146 Sum_probs=80.2
Q ss_pred hcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccC-chhhccccccceEeeccccccchhhcccccccCC
Q 014145 249 AFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLT-LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327 (430)
Q Consensus 249 ~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 327 (430)
.+++|++|+++++.....+|..+..+++|++|++++|. +..++. ...++.+++|++|+++++.....++..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~------- 393 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG------- 393 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC-------
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccccc-------
Confidence 45666777776664444455566667777777777653 333221 112456677777777766432223210
Q ss_pred cceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 328 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 328 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
....+++|++|+++++.--..++.. . .++|++|++++| .++.+|.....+++|+++++.++.
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~--l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRC--L--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGS--C--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC
T ss_pred hhccCccCCEEECcCCCCCcchhhh--h--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc
Confidence 1223677888888776432333221 1 268899999887 566788776688999999997753
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.4e-18 Score=166.92 Aligned_cols=323 Identities=14% Similarity=0.104 Sum_probs=203.6
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.++++|. + .++|++|+++++. ++.+.... ...+++|++|++++|.....+ +...+.++++|++|++++|. +
T Consensus 21 ~l~~lp~-l--~~~l~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~n~~~~~i-~~~~~~~l~~L~~L~Ls~n~-l 91 (455)
T 3v47_A 21 GLHQVPE-L--PAHVNYVDLSLNS-IAELNETS---FSRLQDLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDYNQ-F 91 (455)
T ss_dssp CCSSCCC-C--CTTCCEEECCSSC-CCEECTTT---TSSCTTCCEEECCCCSTTCEE-CTTTTTTCTTCCEEECTTCT-T
T ss_pred CcccCCC-C--CCccCEEEecCCc-cCcCChhH---hccCccccEEECcCCcccceE-CcccccccccCCEEeCCCCc-c
Confidence 3555665 2 2799999999887 77653222 267999999999998533243 33347789999999999995 5
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-------CCCceEEE
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVT 191 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~ 191 (430)
..+ +...+..+++|++|+++++.....++.. ..+..+++|++|++.++. ++... .++|+.|+
T Consensus 92 ~~~---------~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 92 LQL---------ETGAFNGLANLEVLTLTQCNLDGAVLSG-NFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp CEE---------CTTTTTTCTTCCEEECTTSCCBTHHHHS-STTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEE
T ss_pred Ccc---------ChhhccCcccCCEEeCCCCCCCccccCc-ccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEe
Confidence 555 2333488999999999997543333322 126689999999999986 44332 56899999
Q ss_pred ecCCCCCcccC--C-----CceeeecCcccccc-------------cCCCCCCCCEEecccCCCceeeccCCchhhhhcc
Q 014145 192 TDNKEPEKLTS--E-----ENFFLTDQIQPLFD-------------EKVAFPQLRYLELSRLHKVQHLWKENDESNKAFA 251 (430)
Q Consensus 192 l~~~~~~~~~~--~-----~~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~ 251 (430)
+++|.+.++.+ + .++..++....-+. ....+++|++|+++++ .+....+..+......+
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~ 239 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGT 239 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhcccccc
Confidence 99998766442 1 12222221000000 0123356666666664 23222122111101226
Q ss_pred cccEEEeecCCCccccc----------CCc--ccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhc
Q 014145 252 NLIRLKISECSKLQKLV----------TPS--WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 252 ~L~~L~l~~c~~l~~l~----------~~l--~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
+|+.|+++++....... ..+ ...++|+.|+++++. +...+.. .++.+++|++|+++++.. ..+..
T Consensus 240 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l-~~~~~ 316 (455)
T 3v47_A 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFALLKS-VFSHFTDLEQLTLAQNEI-NKIDD 316 (455)
T ss_dssp CEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEECTT-TTTTCTTCCEEECTTSCC-CEECT
T ss_pred ceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-ccccchh-hcccCCCCCEEECCCCcc-cccCh
Confidence 67777776653322110 001 123689999999875 4443332 367889999999998753 33321
Q ss_pred ccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeeccccC
Q 014145 320 LQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 320 ~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
.....+++|++|+++++ .++.+... ....+++|++|++++|.-....|..+..+++|++|++.++.
T Consensus 317 -------~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 317 -------NAFWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp -------TTTTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred -------hHhcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 11223789999999997 66766432 23458999999999985544446677789999999997753
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=177.37 Aligned_cols=92 Identities=13% Similarity=0.145 Sum_probs=50.7
Q ss_pred hhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCc-cCchhHHHhcCCCCEEEEecCCCccEec
Q 014145 44 YEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLS-AIPANLIRCLNNLRWLEVRNCDSLEEVL 122 (430)
Q Consensus 44 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 122 (430)
+..+..+++|++|+++++. +..+.... ...+++|++|++++|. +.. .+....+.++++|++|++++|. +..+.
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~-l~~~~p~~---~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~ 139 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSK-IYFLHPDA---FQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLY 139 (844)
T ss_dssp TTTTSSCTTCCEEECTTCC-CCEECTTS---SCSCSSCCCEECTTCC-CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCC
T ss_pred HHHhcCCCCCCEEECCCCc-CcccCHhH---ccCCcccCEeeCcCCC-CCcccccCccccccCCCCEEECCCCc-ccccc
Confidence 3445567777777777665 55432211 1456777777777763 333 2222235567777777777763 32221
Q ss_pred ccccccCCccCcCCcCCccceeecCCc
Q 014145 123 HLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 123 ~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
+...+..+++|++|+++++
T Consensus 140 --------~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 140 --------LHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp --------CCGGGGTCSSCCEEEEESS
T ss_pred --------cchhHhhCCCCCEEECCCC
Confidence 1122356666777766664
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-17 Score=157.57 Aligned_cols=232 Identities=20% Similarity=0.241 Sum_probs=168.0
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
..++++.|+++++ ++..+++ . +..+++|++|++++|. +..+ |..+ ..+++|++|+++++ .+..+|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~-~-l~~l~~L~~L~L~~n~-l~~l---------p~~~-~~l~~L~~L~Ls~n-~l~~lp 143 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPD-Q-AFRLSHLQHMTIDAAG-LMEL---------PDTM-QQFAGLETLTLARN-PLRALP 143 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCS-C-GGGGTTCSEEEEESSC-CCCC---------CSCG-GGGTTCSEEEEESC-CCCCCC
T ss_pred cccceeEEEccCC-CchhcCh-h-hhhCCCCCEEECCCCC-ccch---------hHHH-hccCCCCEEECCCC-ccccCc
Confidence 4588999999997 4665444 3 5669999999999984 5555 5555 88999999999986 455666
Q ss_pred CCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
.. +..+++|++|++.+|..+..++. .+....+. .....+++|++|+++++ .+
T Consensus 144 ~~---l~~l~~L~~L~L~~n~~~~~~p~-~~~~~~~~-----------------------~~~~~l~~L~~L~L~~n-~l 195 (328)
T 4fcg_A 144 AS---IASLNRLRELSIRACPELTELPE-PLASTDAS-----------------------GEHQGLVNLQSLRLEWT-GI 195 (328)
T ss_dssp GG---GGGCTTCCEEEEEEETTCCCCCS-CSEEEC-C-----------------------CCEEESTTCCEEEEEEE-CC
T ss_pred HH---HhcCcCCCEEECCCCCCccccCh-hHhhccch-----------------------hhhccCCCCCEEECcCC-Cc
Confidence 54 78899999999999876654432 12111110 11345778888888885 56
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccch
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
+.++ ..+ ..+++|+.|+++++ .+..+|..+..+++|++|++++|.....++. .++.+++|++|++++|...+.
T Consensus 196 ~~lp-~~l---~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~ 268 (328)
T 4fcg_A 196 RSLP-ASI---ANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLILKDCSNLLT 268 (328)
T ss_dssp CCCC-GGG---GGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC--CTTCCCCCCEEECTTCTTCCB
T ss_pred Ccch-Hhh---cCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH--HhcCCCCCCEEECCCCCchhh
Confidence 6553 233 77888999999886 4556777777888899999998887777665 367788899999988876655
Q ss_pred hhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeecc
Q 014145 317 IIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
++. ....+++|++|++++|+.++.++.. ...+++|+.+.+..
T Consensus 269 ~p~--------~~~~l~~L~~L~L~~n~~~~~iP~~--l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 269 LPL--------DIHRLTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVPP 310 (328)
T ss_dssp CCT--------TGGGCTTCCEEECTTCTTCCCCCGG--GGGSCTTCEEECCG
T ss_pred cch--------hhhcCCCCCEEeCCCCCchhhccHH--HhhccCceEEeCCH
Confidence 541 2234788999999998888888863 34588888888764
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-17 Score=170.52 Aligned_cols=324 Identities=14% Similarity=0.138 Sum_probs=186.1
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+.++|..+. +++++|+++++. ++.+.... ...+++|++|+++++ .+....+. .+.++++|++|++++| .+.
T Consensus 16 L~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~ 86 (680)
T 1ziw_A 16 LTQVPDDLP--TNITVLNLTHNQ-LRRLPAAN---FTRYSQLTSLDVGFN-TISKLEPE-LCQKLPMLKVLNLQHN-ELS 86 (680)
T ss_dssp CSSCCSCSC--TTCSEEECCSSC-CCCCCGGG---GGGGTTCSEEECCSS-CCCCCCTT-HHHHCTTCCEEECCSS-CCC
T ss_pred ccccccccC--CCCcEEECCCCC-CCCcCHHH---HhCCCcCcEEECCCC-ccCccCHH-HHhcccCcCEEECCCC-ccC
Confidence 555665543 699999999886 66544322 256899999999997 46665454 4888999999999998 466
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEec
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTD 193 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~ 193 (430)
.+ |...+..+++|++|+++++ .+..++.. .+..+++|++|++.+|. ++..+ ..+|++|+++
T Consensus 87 ~l---------~~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 87 QL---------SDKTFAFCTNLTELHLMSN-SIQKIKNN--PFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp CC---------CTTTTTTCTTCSEEECCSS-CCCCCCSC--TTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECC
T ss_pred cc---------ChhhhccCCCCCEEECCCC-ccCccChh--HccccCCCCEEECCCCc-ccccCchhhcccccCCEEEcc
Confidence 66 5555689999999999997 45555422 26789999999999986 44433 4689999999
Q ss_pred CCCCCcccC-------CCceeeec---C-ccccc-ccCCC---------------------------CCCCCEEecccCC
Q 014145 194 NKEPEKLTS-------EENFFLTD---Q-IQPLF-DEKVA---------------------------FPQLRYLELSRLH 234 (430)
Q Consensus 194 ~~~~~~~~~-------~~~l~~~~---~-~~~~~-~~~~~---------------------------~~~L~~L~l~~~~ 234 (430)
+|.+..+.+ .+++..++ . ..... ..... .++|++|+++++
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n- 232 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS- 232 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTS-
T ss_pred CCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCC-
Confidence 998665431 12333221 0 00000 00111 144555555553
Q ss_pred CceeeccCCchhhhhcc--cccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 235 KVQHLWKENDESNKAFA--NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 235 ~l~~~~~~~~~~~~~l~--~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.+....+..+ ..++ +|+.|+++++......+..+..+++|++|+++++. +..++.. .+..+++|++|+++++.
T Consensus 233 ~l~~~~~~~~---~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~~~ 307 (680)
T 1ziw_A 233 QLSTTSNTTF---LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSH-SLHGLFNVRYLNLKRSF 307 (680)
T ss_dssp CCCEECTTTT---GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC-BSEECTT-TTTTCTTCCEEECTTCB
T ss_pred cccccChhHh---hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc-cCccChh-hhcCCCCccEEeccchh
Confidence 3444433333 3333 37777776654333333445566677777776653 3333222 24556677777776542
Q ss_pred ccchhhcccccc-cCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCC-CcccCCCC---cCCCCcee
Q 014145 313 MIEQIIQLQVGE-EAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPT-MKIFSQGV---VDAPKLNK 387 (430)
Q Consensus 313 ~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~-l~~~~~~~---~~~~~L~~ 387 (430)
.-..+....... .......+++|++|++.++ .++.+... ....+++|++|++++|.. +..++... ...++|+.
T Consensus 308 ~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~ 385 (680)
T 1ziw_A 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI 385 (680)
T ss_dssp CCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCE
T ss_pred hhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChh-HhccccCCcEEECCCCchhhhhcchhhhcccccCcCce
Confidence 211110000000 0001122566777777665 34444321 223467777777777642 33333221 12356777
Q ss_pred eecccc
Q 014145 388 VKPTEE 393 (430)
Q Consensus 388 l~l~~~ 393 (430)
+++.++
T Consensus 386 L~L~~n 391 (680)
T 1ziw_A 386 LNLTKN 391 (680)
T ss_dssp EECTTS
T ss_pred EECCCC
Confidence 777554
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.3e-17 Score=154.13 Aligned_cols=154 Identities=13% Similarity=0.090 Sum_probs=73.8
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 299 (430)
..+++|++|+++++ .++.++. ...++|++|+++++......+..+..+++|++|+++++. +..++.. .+..
T Consensus 168 ~~l~~L~~L~l~~n-~l~~l~~------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~ 238 (330)
T 1xku_A 168 QGMKKLSYIRIADT-NITTIPQ------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNG-SLAN 238 (330)
T ss_dssp GGCTTCCEEECCSS-CCCSCCS------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTT-TGGG
T ss_pred cCCCCcCEEECCCC-ccccCCc------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChh-hccC
Confidence 34556666666653 3443322 112566666666653222223344556666666666543 3333321 2345
Q ss_pred ccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc-----ccCCCCccEEeeccCCCCc-
Q 014145 300 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY-----ALEFPSLEHVVVRQCPTMK- 373 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~-----~~~~~~L~~L~l~~c~~l~- 373 (430)
+++|++|++++|. +..++ .....+++|++|++.++ .++.++...- ....++|+.+++.+++...
T Consensus 239 l~~L~~L~L~~N~-l~~lp--------~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 239 TPHLRELHLNNNK-LVKVP--------GGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp STTCCEEECCSSC-CSSCC--------TTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCCCCEEECCCCc-CccCC--------hhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCccccc
Confidence 5666666666553 22222 11122566666666654 3444433110 0123567777777665321
Q ss_pred -ccCCCCcCCCCceeeeccc
Q 014145 374 -IFSQGVVDAPKLNKVKPTE 392 (430)
Q Consensus 374 -~~~~~~~~~~~L~~l~l~~ 392 (430)
..|..+..+.+++.+++.+
T Consensus 309 ~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 309 EIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp GSCGGGGTTCCCGGGEEC--
T ss_pred ccCccccccccceeEEEecc
Confidence 2233344566677776644
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-17 Score=154.16 Aligned_cols=284 Identities=12% Similarity=0.101 Sum_probs=161.4
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCc
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 131 (430)
+++.++++++. ++.+ |....++|+.|+++++ ++..+++.. +.++++|++|++++| .+..+ +
T Consensus 34 ~l~~l~~~~~~-l~~i------p~~~~~~l~~L~l~~n-~i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~---------~ 94 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAV------PKEISPDTTLLDLQNN-DISELRKDD-FKGLQHLYALVLVNN-KISKI---------H 94 (332)
T ss_dssp ETTEEECCSSC-CSSC------CSCCCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEE---------C
T ss_pred cCCEEECCCCC-cccc------CCCCCCCCeEEECCCC-cCCccCHhH-hhCCCCCcEEECCCC-ccCcc---------C
Confidence 56777776654 4442 2233467777777776 355544433 566777788877777 35544 2
Q ss_pred cCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcccCCCc
Q 014145 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEEN 205 (430)
Q Consensus 132 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~ 205 (430)
...+..+++|++|+++++ .+..+|.. . .++|++|++.++. ++.++ .++|+.|++++|.+.....
T Consensus 95 ~~~~~~l~~L~~L~L~~n-~l~~l~~~---~--~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--- 164 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKN-HLVEIPPN---L--PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGF--- 164 (332)
T ss_dssp GGGSTTCTTCCEEECCSS-CCCSCCSS---C--CTTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGS---
T ss_pred HhHhhCcCCCCEEECCCC-cCCccCcc---c--cccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCC---
Confidence 222467777777777775 44455432 2 2677777777664 44333 3567777777776543110
Q ss_pred eeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccC
Q 014145 206 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 285 (430)
.......+ +|+.|+++++ .++.++. ...++|++|+++++......+..+..+++|+.|+++++
T Consensus 165 ---------~~~~~~~l-~L~~L~l~~n-~l~~l~~------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N 227 (332)
T 2ft3_A 165 ---------EPGAFDGL-KLNYLRISEA-KLTGIPK------DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227 (332)
T ss_dssp ---------CTTSSCSC-CCSCCBCCSS-BCSSCCS------SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred ---------CcccccCC-ccCEEECcCC-CCCccCc------cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence 00112233 7777777774 4554432 22367777777776433333345667777888887775
Q ss_pred CCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcc-----cCCCC
Q 014145 286 HGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYA-----LEFPS 360 (430)
Q Consensus 286 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~-----~~~~~ 360 (430)
.+..++.. .+..+++|++|+++++. +..++ .....+++|++|+++++ .++.++..... ...++
T Consensus 228 -~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~lp--------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 228 -QIRMIENG-SLSFLPTLRELHLDNNK-LSRVP--------AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp -CCCCCCTT-GGGGCTTCCEEECCSSC-CCBCC--------TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCC
T ss_pred -cCCcCChh-HhhCCCCCCEEECCCCc-CeecC--------hhhhcCccCCEEECCCC-CCCccChhHcccccccccccc
Confidence 34444432 24567778888887763 33332 12233677777877775 45655432110 11466
Q ss_pred ccEEeeccCCCC--cccCCCCcCCCCceeeecccc
Q 014145 361 LEHVVVRQCPTM--KIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 361 L~~L~l~~c~~l--~~~~~~~~~~~~L~~l~l~~~ 393 (430)
|+.|.+.+++.. ...+..+..+++|+.+++.++
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 788888877643 233344556777777777543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-17 Score=165.29 Aligned_cols=317 Identities=14% Similarity=0.159 Sum_probs=180.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.++.+|.++. ++|++|+++++. +..+.... ...+++|++|+++++ .+..+.|.. +.++++|++|++++|. +
T Consensus 42 ~L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l 112 (562)
T 3a79_B 42 NLTHVPKDLP--PRTKALSLSQNS-ISELRMPD---ISFLSELRVLRLSHN-RIRSLDFHV-FLFNQDLEYLDVSHNR-L 112 (562)
T ss_dssp CCCSCCTTSC--TTCCEEECCSSC-CCCCCGGG---TTTCTTCCEEECCSC-CCCEECTTT-TTTCTTCCEEECTTSC-C
T ss_pred CCccCCCCCC--CCcCEEECCCCC-ccccChhh---hccCCCccEEECCCC-CCCcCCHHH-hCCCCCCCEEECCCCc-C
Confidence 3455665442 788888888776 65543221 156788888888887 455544433 6678888888888874 6
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCc--eEEEec
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSV--VHVTTD 193 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L--~~L~l~ 193 (430)
..+ |.. .+++|++|+++++ .+..++.... +..+++|++|++.++. ++... ..++ +.|+++
T Consensus 113 ~~l---------p~~---~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 113 QNI---------SCC---PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLD 177 (562)
T ss_dssp CEE---------CSC---CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSB-CCTTTTGGGTTSCEEEEEEE
T ss_pred Ccc---------Ccc---ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCc-cccCchhhhhhceeeEEEee
Confidence 666 333 5788888888875 3444432111 6678888888887754 33222 2334 777777
Q ss_pred CCCC--Cccc-----CC--------------------------Cceeeec--Cc-------cccccc-------------
Q 014145 194 NKEP--EKLT-----SE--------------------------ENFFLTD--QI-------QPLFDE------------- 218 (430)
Q Consensus 194 ~~~~--~~~~-----~~--------------------------~~l~~~~--~~-------~~~~~~------------- 218 (430)
+|.+ .... .+ +++..++ .. ...+..
T Consensus 178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~ 257 (562)
T 3a79_B 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257 (562)
T ss_dssp ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence 7654 2111 00 0111000 00 000000
Q ss_pred --------------CCCCCCCCEEecccCCCce-eeccCCc---------------------------------------
Q 014145 219 --------------KVAFPQLRYLELSRLHKVQ-HLWKEND--------------------------------------- 244 (430)
Q Consensus 219 --------------~~~~~~L~~L~l~~~~~l~-~~~~~~~--------------------------------------- 244 (430)
....++|++|+++++. +. .++...+
T Consensus 258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLT-ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp EEEECHHHHHHHHHHHTTSSEEEEEEEEEE-ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEE
T ss_pred CCcCcHHHHHHHHHhhhcccccEEEEeccE-eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEE
Confidence 0001134444443321 11 1111000
Q ss_pred ----------hhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCc-hhhccccccceEeeccccc
Q 014145 245 ----------ESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTL-STSESLVNLGRMKIADCKM 313 (430)
Q Consensus 245 ----------~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~~l~~L~~L~l~~c~~ 313 (430)
.....+++|+.|+++++.....+|..+..+++|+.|+++++ .+..++.. ..++.+++|++|+++++..
T Consensus 337 ~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 337 SISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp EEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred EccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 00034567777777776544446666777788888888875 45544321 1246677888888877653
Q ss_pred cchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCC-CCccEEeeccCCCCcccCCCCcCCCCceeeeccc
Q 014145 314 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEF-PSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTE 392 (430)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~ 392 (430)
...+.. .....+++|++|+++++.--..++. .+ ++|++|++++| .++.+|.....+++|++|++.+
T Consensus 416 ~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 416 NSHAYD-------RTCAWAESILVLNLSSNMLTGSVFR-----CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp BSCCSS-------CCCCCCTTCCEEECCSSCCCGGGGS-----SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCS
T ss_pred CCccCh-------hhhcCcccCCEEECCCCCCCcchhh-----hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCC
Confidence 221321 0122367888888888742222221 23 68999999987 7778888777899999999977
Q ss_pred cC
Q 014145 393 EE 394 (430)
Q Consensus 393 ~~ 394 (430)
+.
T Consensus 483 N~ 484 (562)
T 3a79_B 483 NQ 484 (562)
T ss_dssp SC
T ss_pred CC
Confidence 53
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=170.78 Aligned_cols=316 Identities=13% Similarity=0.072 Sum_probs=191.2
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+..+|. -.++|++|+++++. ++.+.... ...+++|++|++++|.....+.+.. ++++++|++|++++|. +.
T Consensus 16 L~~vP~---lp~~l~~LdLs~N~-i~~i~~~~---~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~-l~ 86 (844)
T 3j0a_A 16 LTQVPQ---VLNTTERLLLSFNY-IRTVTASS---FPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSK-IY 86 (844)
T ss_dssp SSCCCS---SCTTCCEEEEESCC-CCEECSSS---CSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCC-CC
T ss_pred CCCCCC---CCCCcCEEECCCCc-CCccChhH---CcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCc-Cc
Confidence 445554 23678888888776 66543222 1567888888888875444443433 6778888888888874 55
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-------CCCceEEEe
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-------SNSVVHVTT 192 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-------~~~L~~L~l 192 (430)
.+ +.+.+..+++|++|+++++.....++.. ..+..+++|++|++.+|. ++... .++|+.|++
T Consensus 87 ~~---------~p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 87 FL---------HPDAFQGLFHLFELRLYFCGLSDAVLKD-GYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp EE---------CTTSSCSCSSCCCEECTTCCCSSCCSTT-CCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEE
T ss_pred cc---------CHhHccCCcccCEeeCcCCCCCcccccC-ccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEEC
Confidence 44 2333477888888888876433323222 125677888888888775 33221 457788888
Q ss_pred cCCCCCccc----------CCCceeeecC--cccccccCCCCC------CCCEEecccCCCceeeccCCch---------
Q 014145 193 DNKEPEKLT----------SEENFFLTDQ--IQPLFDEKVAFP------QLRYLELSRLHKVQHLWKENDE--------- 245 (430)
Q Consensus 193 ~~~~~~~~~----------~~~~l~~~~~--~~~~~~~~~~~~------~L~~L~l~~~~~l~~~~~~~~~--------- 245 (430)
++|.+..+. +++.+.+... ........+.++ .|+.|+++++. +.......+.
T Consensus 156 s~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp ESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBS
T ss_pred CCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCccccc
Confidence 877754332 2222222110 011111122222 49999999862 2111010000
Q ss_pred ------------------------hh--hhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcc
Q 014145 246 ------------------------SN--KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 246 ------------------------~~--~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 299 (430)
.. ...++|+.|+++++......+..+..+++|+.|+++++. +..++.. .+..
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~ 312 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADE-AFYG 312 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTT-TTTT
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChH-HhcC
Confidence 00 113689999998875444445667788999999999864 5554432 3577
Q ss_pred ccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCC
Q 014145 300 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV 379 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 379 (430)
+++|++|+++++. +..+. +.....+++|++|++.++ .++.++.. ....+++|++|+++++ .++.++.
T Consensus 313 l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i~~-- 379 (844)
T 3j0a_A 313 LDNLQVLNLSYNL-LGELY-------SSNFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDN-ALTTIHF-- 379 (844)
T ss_dssp CSSCCEEEEESCC-CSCCC-------SCSCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETC-CSCCCSS--
T ss_pred CCCCCEEECCCCC-CCccC-------HHHhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCC-CCCcccC--
Confidence 8999999998874 33332 112234789999999987 56666542 2345899999999886 4444433
Q ss_pred cCCCCceeeecccc
Q 014145 380 VDAPKLNKVKPTEE 393 (430)
Q Consensus 380 ~~~~~L~~l~l~~~ 393 (430)
+++|+.+.+.++
T Consensus 380 --~~~L~~L~l~~N 391 (844)
T 3j0a_A 380 --IPSIPDIFLSGN 391 (844)
T ss_dssp --CCSCSEEEEESC
T ss_pred --CCCcchhccCCC
Confidence 677777777654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-17 Score=154.21 Aligned_cols=277 Identities=15% Similarity=0.103 Sum_probs=193.0
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+.++|..+ +++|++|+++++. +..+.... ...+++|++|++++| .+..+.+.. +.++++|++|++++| .+
T Consensus 44 ~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~n-~l 114 (332)
T 2ft3_A 44 GLKAVPKEI--SPDTTLLDLQNND-ISELRKDD---FKGLQHLYALVLVNN-KISKIHEKA-FSPLRKLQKLYISKN-HL 114 (332)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECGGG-STTCTTCCEEECCSS-CC
T ss_pred CccccCCCC--CCCCeEEECCCCc-CCccCHhH---hhCCCCCcEEECCCC-ccCccCHhH-hhCcCCCCEEECCCC-cC
Confidence 455666654 4799999999887 77654322 257899999999998 466654544 778999999999998 45
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccc--cc-----CCCceEEE
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET--FI-----SNSVVHVT 191 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--~~-----~~~L~~L~ 191 (430)
..+ |..+ .++|++|+++++ .+..++.. .+..+++|++|++.++. ++. .. ..+|+.|+
T Consensus 115 ~~l---------~~~~---~~~L~~L~l~~n-~i~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~ 178 (332)
T 2ft3_A 115 VEI---------PPNL---PSSLVELRIHDN-RIRKVPKG--VFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLR 178 (332)
T ss_dssp CSC---------CSSC---CTTCCEEECCSS-CCCCCCSG--GGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCB
T ss_pred Ccc---------Cccc---cccCCEEECCCC-ccCccCHh--HhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEE
Confidence 555 4444 289999999986 45555432 25789999999999886 432 11 22788899
Q ss_pred ecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CC
Q 014145 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TP 270 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~ 270 (430)
+++|.+..+. ....++|++|+++++ .++.+....+ ..+++|+.|+++++. +..++ ..
T Consensus 179 l~~n~l~~l~-----------------~~~~~~L~~L~l~~n-~i~~~~~~~l---~~l~~L~~L~L~~N~-l~~~~~~~ 236 (332)
T 2ft3_A 179 ISEAKLTGIP-----------------KDLPETLNELHLDHN-KIQAIELEDL---LRYSKLYRLGLGHNQ-IRMIENGS 236 (332)
T ss_dssp CCSSBCSSCC-----------------SSSCSSCSCCBCCSS-CCCCCCTTSS---TTCTTCSCCBCCSSC-CCCCCTTG
T ss_pred CcCCCCCccC-----------------ccccCCCCEEECCCC-cCCccCHHHh---cCCCCCCEEECCCCc-CCcCChhH
Confidence 9999877755 233479999999985 6777665556 788999999999974 44444 45
Q ss_pred cccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCc--ceeecccceEeccCCCCCc-
Q 014145 271 SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKG--CVVFEELGYLGLDCLPSLT- 347 (430)
Q Consensus 271 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~c~~L~- 347 (430)
+..+++|++|++++| .+..++. .+..+++|++|+++++. +..+.... +... ...++.|+.|++.+++...
T Consensus 237 ~~~l~~L~~L~L~~N-~l~~lp~--~l~~l~~L~~L~l~~N~-l~~~~~~~---~~~~~~~~~~~~l~~L~l~~N~~~~~ 309 (332)
T 2ft3_A 237 LSFLPTLRELHLDNN-KLSRVPA--GLPDLKLLQVVYLHTNN-ITKVGVND---FCPVGFGVKRAYYNGISLFNNPVPYW 309 (332)
T ss_dssp GGGCTTCCEEECCSS-CCCBCCT--TGGGCTTCCEEECCSSC-CCBCCTTS---SSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred hhCCCCCCEEECCCC-cCeecCh--hhhcCccCCEEECCCCC-CCccChhH---ccccccccccccccceEeecCccccc
Confidence 778999999999987 5667765 36788999999999864 44443211 1110 1125779999999986431
Q ss_pred eeccCCcccCCCCccEEeeccCC
Q 014145 348 SFCLGNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 348 ~~~~~~~~~~~~~L~~L~l~~c~ 370 (430)
.+.. .....+++|+.+++.+++
T Consensus 310 ~~~~-~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 310 EVQP-ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GSCG-GGGTTBCCSTTEEC----
T ss_pred ccCc-ccccccchhhhhhccccc
Confidence 2222 123357889999988764
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-16 Score=149.13 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=47.8
Q ss_pred hhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCC
Q 014145 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAK 327 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 327 (430)
..+++|+.|+++++ .+..+|.... ++|++|+++++. +..+... .+..+++|++|+++++. +..+.. .
T Consensus 168 ~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~~~-------~ 234 (330)
T 1xku_A 168 QGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNK-ITKVDAA-SLKGLNNLAKLGLSFNS-ISAVDN-------G 234 (330)
T ss_dssp GGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSC-CCEECTG-GGTTCTTCCEEECCSSC-CCEECT-------T
T ss_pred cCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCc-CCccCHH-HhcCCCCCCEEECCCCc-CceeCh-------h
Confidence 44555566655554 2334443322 455556555543 3333221 23445555566555543 222110 0
Q ss_pred cceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccC
Q 014145 328 GCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQC 369 (430)
Q Consensus 328 ~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c 369 (430)
....+++|++|+++++ .++.++.. ...+++|++|++++|
T Consensus 235 ~~~~l~~L~~L~L~~N-~l~~lp~~--l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 235 SLANTPHLRELHLNNN-KLVKVPGG--LADHKYIQVVYLHNN 273 (330)
T ss_dssp TGGGSTTCCEEECCSS-CCSSCCTT--TTTCSSCCEEECCSS
T ss_pred hccCCCCCCEEECCCC-cCccCChh--hccCCCcCEEECCCC
Confidence 1112455555555554 44444431 223555566665554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.3e-17 Score=159.77 Aligned_cols=231 Identities=14% Similarity=0.102 Sum_probs=178.1
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+.++|.++. +++++|+++++. ++.+.... ...+++|+.|+++++ .+..+.+. .+.++++|++|++++| .+
T Consensus 65 ~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l 135 (452)
T 3zyi_A 65 GLSEVPQGIP--SNTRYLNLMENN-IQMIQADT---FRHLHHLEVLQLGRN-SIRQIEVG-AFNGLASLNTLELFDN-WL 135 (452)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CC
T ss_pred CcCccCCCCC--CCccEEECcCCc-CceECHHH---cCCCCCCCEEECCCC-ccCCcChh-hccCcccCCEEECCCC-cC
Confidence 3556665543 699999999887 77653322 257899999999997 46665443 3778999999999998 46
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEe
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTT 192 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l 192 (430)
..+ +.+.+..+++|++|+++++ .+..++.. .+..+++|++|++.+|..++.++ ..+|+.|++
T Consensus 136 ~~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 136 TVI---------PSGAFEYLSKLRELWLRNN-PIESIPSY--AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp SBC---------CTTTSSSCTTCCEEECCSC-CCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC
T ss_pred Ccc---------ChhhhcccCCCCEEECCCC-CcceeCHh--HHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC
Confidence 666 5665688999999999986 45566432 26789999999999988887765 468999999
Q ss_pred cCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcc
Q 014145 193 DNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSW 272 (430)
Q Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~ 272 (430)
++|.+..+. ....+++|+.|+++++ .++.+.+..+ ..+++|+.|+++++......+..+.
T Consensus 204 ~~n~l~~~~----------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 204 GMCNIKDMP----------------NLTPLVGLEELEMSGN-HFPEIRPGSF---HGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp TTSCCSSCC----------------CCTTCTTCCEEECTTS-CCSEECGGGG---TTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CCCcccccc----------------cccccccccEEECcCC-cCcccCcccc---cCccCCCEEEeCCCcCceECHHHhc
Confidence 999887754 3567889999999995 6777766666 7889999999999754444456677
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.+++|+.|+++++ .+..++.. .+..+++|++|++++++
T Consensus 264 ~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 GLASLVELNLAHN-NLSSLPHD-LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCTTCCEEECCSS-CCSCCCTT-SSTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCC-cCCccChH-HhccccCCCEEEccCCC
Confidence 8999999999987 56766653 35678999999998765
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=158.10 Aligned_cols=232 Identities=14% Similarity=0.135 Sum_probs=179.8
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
..+.++|.++. ++++.|+++++. ++.+.... ...+++|+.|+++++ .+..+.+ ..+.++++|++|++++| .
T Consensus 53 ~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n-~ 123 (440)
T 3zyj_A 53 KNLREVPDGIS--TNTRLLNLHENQ-IQIIKVNS---FKHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDN-R 123 (440)
T ss_dssp CCCSSCCSCCC--TTCSEEECCSCC-CCEECTTT---TSSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSS-C
T ss_pred CCcCcCCCCCC--CCCcEEEccCCc-CCeeCHHH---hhCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCC-c
Confidence 34666776553 689999999887 77654332 257899999999997 4666444 34788999999999998 5
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEE
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVT 191 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~ 191 (430)
+..+ +.+.+..+++|++|+++++ .+..++.. .+..+++|++|++.+|..+..++ ..+|+.|+
T Consensus 124 l~~~---------~~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 124 LTTI---------PNGAFVYLSKLKELWLRNN-PIESIPSY--AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CSSC---------CTTTSCSCSSCCEEECCSC-CCCEECTT--TTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred CCee---------CHhHhhccccCceeeCCCC-cccccCHH--HhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 6665 5555688999999999986 45556432 26789999999999988777665 46899999
Q ss_pred ecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc
Q 014145 192 TDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 192 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l 271 (430)
+++|.+..+. ....+++|++|+++++ .++.+.+..+ ..+++|+.|+++++......+..+
T Consensus 192 L~~n~l~~~~----------------~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~ 251 (440)
T 3zyj_A 192 LAMCNLREIP----------------NLTPLIKLDELDLSGN-HLSAIRPGSF---QGLMHLQKLWMIQSQIQVIERNAF 251 (440)
T ss_dssp CTTSCCSSCC----------------CCTTCSSCCEEECTTS-CCCEECTTTT---TTCTTCCEEECTTCCCCEECTTSS
T ss_pred CCCCcCcccc----------------ccCCCcccCEEECCCC-ccCccChhhh---ccCccCCEEECCCCceeEEChhhh
Confidence 9999887755 3567889999999996 7888777777 889999999999975444445567
Q ss_pred ccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 272 WHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 272 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
..+++|+.|+++++ .+..++.. .+..+++|+.|++++++
T Consensus 252 ~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 DNLQSLVEINLAHN-NLTLLPHD-LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTT-TTSSCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-CCCccChh-HhccccCCCEEEcCCCC
Confidence 78999999999996 57666653 35778999999998754
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-16 Score=160.54 Aligned_cols=254 Identities=19% Similarity=0.142 Sum_probs=166.2
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.+++.|+++++. ++.++. ...++|+.|++++| ++..+++ .+++|++|++++|. ++.+
T Consensus 40 ~~l~~L~ls~n~-L~~lp~------~l~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~l--------- 96 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPD------CLPAHITTLVIPDN-NLTSLPA-----LPPELRTLEVSGNQ-LTSL--------- 96 (622)
T ss_dssp HCCCEEECCSSC-CSCCCS------CCCTTCSEEEECSC-CCSCCCC-----CCTTCCEEEECSCC-CSCC---------
T ss_pred CCCcEEEecCCC-cCccCh------hhCCCCcEEEecCC-CCCCCCC-----cCCCCCEEEcCCCc-CCcC---------
Confidence 368888888776 665333 23478899999887 4665444 37889999998884 5555
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccCCCceee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
|. .+++|++|+++++ .+..++. .+++|++|++.+|. ++.++ +++|+.|++++|.+.++.
T Consensus 97 p~----~l~~L~~L~Ls~N-~l~~l~~------~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~------- 157 (622)
T 3g06_A 97 PV----LPPGLLELSIFSN-PLTHLPA------LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLP------- 157 (622)
T ss_dssp CC----CCTTCCEEEECSC-CCCCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC-------
T ss_pred CC----CCCCCCEEECcCC-cCCCCCC------CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcC-------
Confidence 33 5688888888875 4555533 46788888888775 66665 478888888888776644
Q ss_pred ecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCc
Q 014145 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGL 288 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l 288 (430)
..+++|+.|+++++ .++.++ ..+++|+.|+++++ .+..+|. .+++|+.|++++| .+
T Consensus 158 -----------~~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~N-~l~~l~~---~~~~L~~L~L~~N-~l 213 (622)
T 3g06_A 158 -----------ALPSELCKLWAYNN-QLTSLP-------MLPSGLQELSVSDN-QLASLPT---LPSELYKLWAYNN-RL 213 (622)
T ss_dssp -----------CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CC
T ss_pred -----------CccCCCCEEECCCC-CCCCCc-------ccCCCCcEEECCCC-CCCCCCC---ccchhhEEECcCC-cc
Confidence 23467777777774 455543 34567777777775 3445543 2367777777765 35
Q ss_pred ccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeecc
Q 014145 289 INVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 289 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
..++. .+++|++|+++++ .+..+. ..+++|++|+++++ .++.++. .+++|++|++++
T Consensus 214 ~~l~~-----~~~~L~~L~Ls~N-~L~~lp-----------~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~ 270 (622)
T 3g06_A 214 TSLPA-----LPSGLKELIVSGN-RLTSLP-----------VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYR 270 (622)
T ss_dssp SSCCC-----CCTTCCEEECCSS-CCSCCC-----------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCS
T ss_pred cccCC-----CCCCCCEEEccCC-ccCcCC-----------CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCC
Confidence 44442 2466777777765 333332 12567777777775 5666654 256777777777
Q ss_pred CCCCcccCCCCcCCCCceeeeccccC
Q 014145 369 CPTMKIFSQGVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 369 c~~l~~~~~~~~~~~~L~~l~l~~~~ 394 (430)
| .++.+|..+..+++|+.|++.+++
T Consensus 271 N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 271 N-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp S-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred C-CCCcCCHHHhhccccCEEEecCCC
Confidence 6 555666666677777777775543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.6e-17 Score=154.68 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=75.2
Q ss_pred CCcceeecccccCCe---eeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc-Eeccccc
Q 014145 51 RDIKYLQLGHFPRLQ---EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEE 126 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~ 126 (430)
.+++.|+++++. +. .++... ..+++|++|+++++.++....|.. +..+++|++|++++|. +. .+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l----~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~-l~~~~----- 117 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTN-VSGAI----- 117 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEEC-CEEEC-----
T ss_pred ceEEEEECCCCC-ccCCcccChhH----hCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCe-eCCcC-----
Confidence 578899998876 54 233322 578899999998644566545544 6788999999999884 44 33
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
|..+ ..+++|++|+++++.....+|.. +..+++|++|++.++.
T Consensus 118 ----p~~~-~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 118 ----PDFL-SQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGNR 160 (313)
T ss_dssp ----CGGG-GGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSC
T ss_pred ----CHHH-hCCCCCCEEeCCCCccCCcCChH---HhcCCCCCeEECcCCc
Confidence 3444 77889999999886443344443 6778888888888875
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-16 Score=153.27 Aligned_cols=256 Identities=11% Similarity=0.103 Sum_probs=155.3
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++|++|+++++ ++..+++. .+.++++|++|++++| .+..+ +...+..+++|++|+++++ .+..++.
T Consensus 51 ~~~L~~L~l~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~---------~~~~~~~l~~L~~L~Ls~n-~l~~~~~ 117 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYISNS-DLQRCVNLQALVLTSN-GINTI---------EEDSFSSLGSLEHLDLSYN-YLSNLSS 117 (353)
T ss_dssp CTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS-CCCEE---------CTTTTTTCTTCCEEECCSS-CCSSCCH
T ss_pred cccCcEEECCCC-cCcccCHH-HhccCCCCCEEECCCC-ccCcc---------CHhhcCCCCCCCEEECCCC-cCCcCCH
Confidence 456777777765 34443332 2556777777777776 45554 2333466677777777664 3333322
Q ss_pred CccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCce
Q 014145 158 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (430)
. .+..+++|++|++.++. ++.++.. .....+++|++|+++++..++
T Consensus 118 ~--~~~~l~~L~~L~L~~n~-l~~l~~~-------------------------------~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 118 S--WFKPLSSLTFLNLLGNP-YKTLGET-------------------------------SLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp H--HHTTCTTCSEEECTTCC-CSSSCSS-------------------------------CSCTTCTTCCEEEEEESSSCC
T ss_pred h--HhCCCccCCEEECCCCC-CcccCch-------------------------------hhhccCCCCcEEECCCCcccc
Confidence 1 13445666666665553 2221110 023567888888888876677
Q ss_pred eeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchh
Q 014145 238 HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 238 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 317 (430)
.+....+ ..+++|++|+++++......|..+..+++|++|+++++. +..++.. ....+++|++|+++++. +..+
T Consensus 164 ~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~-~~~~~~~L~~L~L~~n~-l~~~ 237 (353)
T 2z80_A 164 KIQRKDF---AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI-FVDVTSSVECLELRDTD-LDTF 237 (353)
T ss_dssp EECTTTT---TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHH-HHHHTTTEEEEEEESCB-CTTC
T ss_pred ccCHHHc---cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhh-hhhhcccccEEECCCCc-cccc
Confidence 7666655 778888999998875444456677788889999998864 4554432 34557889999998864 3332
Q ss_pred hcccccccCCcceeecccceEeccCCCCCc-----eeccCCcccCCCCccEEeeccCCCCcccCCCC-cCCCCceeeecc
Q 014145 318 IQLQVGEEAKGCVVFEELGYLGLDCLPSLT-----SFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV-VDAPKLNKVKPT 391 (430)
Q Consensus 318 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-----~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~l~l~ 391 (430)
.... . ......+.++.++++++ .+. .++. ....+++|++|++++| .++.+|... ..+++|++|++.
T Consensus 238 ~~~~---l-~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~--~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 238 HFSE---L-STGETNSLIKKFTFRNV-KITDESLFQVMK--LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp CCC----------CCCCCCEEEEESC-BCCHHHHHHHHH--HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cccc---c-ccccccchhhccccccc-cccCcchhhhHH--HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEee
Confidence 2110 0 01112455666666665 222 2222 2235789999999887 666888764 688999999996
Q ss_pred ccC
Q 014145 392 EEE 394 (430)
Q Consensus 392 ~~~ 394 (430)
+++
T Consensus 310 ~N~ 312 (353)
T 2z80_A 310 TNP 312 (353)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=158.09 Aligned_cols=134 Identities=19% Similarity=0.114 Sum_probs=81.7
Q ss_pred cccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcc
Q 014145 250 FANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC 329 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 329 (430)
+++++.++++.+......+.....++.|+.|+++++.....+.+. .+..+++|++|++++|. +..++. ...
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~-~~~~l~~L~~L~Ls~N~-L~~l~~-------~~f 514 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ-LEQLSP-------TAF 514 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC-CCEECT-------TTT
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCch-hhhhccccCEEECCCCc-cCCcCh-------HHH
Confidence 334444444443222222333446677888888777555443332 35677888888888874 444321 112
Q ss_pred eeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCC-CCceeeeccccC
Q 014145 330 VVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA-PKLNKVKPTEEE 394 (430)
Q Consensus 330 ~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~L~~l~l~~~~ 394 (430)
..+++|++|+++++ +++.++.. ....+++|++|+++++.-....|..+..+ ++|+.|++.+++
T Consensus 515 ~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 515 NSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred cCCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 23788999999886 67777642 23457899999998874443344455555 589999997654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-15 Score=157.27 Aligned_cols=245 Identities=17% Similarity=0.117 Sum_probs=185.2
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|..+. ++|++|+++++. ++.+ |. .+++|++|++++| .+..++. .+++|++|++++| .+
T Consensus 51 ~L~~lp~~l~--~~L~~L~L~~N~-l~~l------p~-~l~~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N-~l 113 (622)
T 3g06_A 51 GLTTLPDCLP--AHITTLVIPDNN-LTSL------PA-LPPELRTLEVSGN-QLTSLPV-----LPPGLLELSIFSN-PL 113 (622)
T ss_dssp CCSCCCSCCC--TTCSEEEECSCC-CSCC------CC-CCTTCCEEEECSC-CCSCCCC-----CCTTCCEEEECSC-CC
T ss_pred CcCccChhhC--CCCcEEEecCCC-CCCC------CC-cCCCCCEEEcCCC-cCCcCCC-----CCCCCCEEECcCC-cC
Confidence 4556666554 799999999886 6653 33 5799999999998 4666444 5899999999998 45
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKE 196 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~ 196 (430)
..+ |. .+++|+.|+++++ .+..+|. .+++|++|++.+|. ++.++ +.+|+.|++++|.
T Consensus 114 ~~l---------~~----~l~~L~~L~L~~N-~l~~lp~------~l~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 114 THL---------PA----LPSGLCKLWIFGN-QLTSLPV------LPPGLQELSVSDNQ-LASLPALPSELCKLWAYNNQ 172 (622)
T ss_dssp CCC---------CC----CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCC---------CC----CCCCcCEEECCCC-CCCcCCC------CCCCCCEEECcCCc-CCCcCCccCCCCEEECCCCC
Confidence 555 23 5689999999986 5666654 35899999999985 66655 6789999999998
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLEN 276 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~ 276 (430)
+..+. ..+++|+.|+++++ .++.++ ..+++|+.|+++++ .+..+|. .+++
T Consensus 173 l~~l~------------------~~~~~L~~L~Ls~N-~l~~l~-------~~~~~L~~L~L~~N-~l~~l~~---~~~~ 222 (622)
T 3g06_A 173 LTSLP------------------MLPSGLQELSVSDN-QLASLP-------TLPSELYKLWAYNN-RLTSLPA---LPSG 222 (622)
T ss_dssp CSCCC------------------CCCTTCCEEECCSS-CCSCCC-------CCCTTCCEEECCSS-CCSSCCC---CCTT
T ss_pred CCCCc------------------ccCCCCcEEECCCC-CCCCCC-------CccchhhEEECcCC-cccccCC---CCCC
Confidence 87744 45789999999985 566543 34578999999986 4566654 3578
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCccc
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYAL 356 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~ 356 (430)
|+.|++++| .++.++ ..+++|++|+++++ .+..++. .+++|++|++.++ .++.++. ...
T Consensus 223 L~~L~Ls~N-~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~-----------~~~~L~~L~Ls~N-~L~~lp~--~l~ 281 (622)
T 3g06_A 223 LKELIVSGN-RLTSLP-----VLPSELKELMVSGN-RLTSLPM-----------LPSGLLSLSVYRN-QLTRLPE--SLI 281 (622)
T ss_dssp CCEEECCSS-CCSCCC-----CCCTTCCEEECCSS-CCSCCCC-----------CCTTCCEEECCSS-CCCSCCG--GGG
T ss_pred CCEEEccCC-ccCcCC-----CCCCcCcEEECCCC-CCCcCCc-----------ccccCcEEeCCCC-CCCcCCH--HHh
Confidence 999999986 566655 44688999999887 4555431 3788999999987 6777765 345
Q ss_pred CCCCccEEeeccCCCC
Q 014145 357 EFPSLEHVVVRQCPTM 372 (430)
Q Consensus 357 ~~~~L~~L~l~~c~~l 372 (430)
.+++|+.|++.+++-.
T Consensus 282 ~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 282 HLSSETTVNLEGNPLS 297 (622)
T ss_dssp GSCTTCEEECCSCCCC
T ss_pred hccccCEEEecCCCCC
Confidence 6899999999988643
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=153.33 Aligned_cols=270 Identities=16% Similarity=0.115 Sum_probs=159.8
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
..++++|.++. ++|++|+++++. ++.+.... ...+++|++|+++++ .+..+.+.. +.++++|++|++++| .
T Consensus 41 ~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n-~ 111 (353)
T 2z80_A 41 GSLNSIPSGLT--EAVKSLDLSNNR-ITYISNSD---LQRCVNLQALVLTSN-GINTIEEDS-FSSLGSLEHLDLSYN-Y 111 (353)
T ss_dssp TTCSSCCTTCC--TTCCEEECTTSC-CCEECTTT---TTTCTTCCEEECTTS-CCCEECTTT-TTTCTTCCEEECCSS-C
T ss_pred CCccccccccc--ccCcEEECCCCc-CcccCHHH---hccCCCCCEEECCCC-ccCccCHhh-cCCCCCCCEEECCCC-c
Confidence 45667776553 599999999887 77754422 257899999999998 566654433 678999999999998 4
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCC
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEP 197 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~ 197 (430)
+..+ +...+..+++|++|+++++ .+..++... .+..+++|++|++.+|..++..++.
T Consensus 112 l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~l~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~------------ 168 (353)
T 2z80_A 112 LSNL---------SSSWFKPLSSLTFLNLLGN-PYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRK------------ 168 (353)
T ss_dssp CSSC---------CHHHHTTCTTCSEEECTTC-CCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTT------------
T ss_pred CCcC---------CHhHhCCCccCCEEECCCC-CCcccCchh-hhccCCCCcEEECCCCccccccCHH------------
Confidence 5555 4443478899999999986 555565411 2678999999999998656554321
Q ss_pred CcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc-ccCCC
Q 014145 198 EKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLEN 276 (430)
Q Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~ 276 (430)
..+.+++|++|+++++ .++.+.+..+ ..+++|++|+++++. +..++... ..+++
T Consensus 169 --------------------~~~~l~~L~~L~l~~n-~l~~~~~~~l---~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~ 223 (353)
T 2z80_A 169 --------------------DFAGLTFLEELEIDAS-DLQSYEPKSL---KSIQNVSHLILHMKQ-HILLLEIFVDVTSS 223 (353)
T ss_dssp --------------------TTTTCCEEEEEEEEET-TCCEECTTTT---TTCSEEEEEEEECSC-STTHHHHHHHHTTT
T ss_pred --------------------HccCCCCCCEEECCCC-CcCccCHHHH---hccccCCeecCCCCc-cccchhhhhhhccc
Confidence 1234455555555553 3444433333 455556666665543 33333221 23555
Q ss_pred CCEEEEccCCCcccccCch--hhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc
Q 014145 277 LATLEVSKCHGLINVLTLS--TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY 354 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 354 (430)
|+.|+++++. +...+... .....+.++.+++.++..-..-. ...+.....+++|++|+++++ .++.++.+.
T Consensus 224 L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l----~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~- 296 (353)
T 2z80_A 224 VECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESL----FQVMKLLNQISGLLELEFSRN-QLKSVPDGI- 296 (353)
T ss_dssp EEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHH----HHHHHHHHTCTTCCEEECCSS-CCCCCCTTT-
T ss_pred ccEEECCCCc-cccccccccccccccchhhccccccccccCcch----hhhHHHHhcccCCCEEECCCC-CCCccCHHH-
Confidence 6666665542 22221110 11223445566665543211100 000011123677788888776 566665421
Q ss_pred ccCCCCccEEeeccCCC
Q 014145 355 ALEFPSLEHVVVRQCPT 371 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~ 371 (430)
...+++|++|++.+++-
T Consensus 297 ~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp TTTCTTCCEEECCSSCB
T ss_pred HhcCCCCCEEEeeCCCc
Confidence 23477888888877643
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=150.19 Aligned_cols=248 Identities=14% Similarity=0.123 Sum_probs=145.8
Q ss_pred CCcceEEEeCCCCCCc--cCchhHHHhcCCCCEEEEecCCCcc-EecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 79 NNLRHLVVDDCTNMLS--AIPANLIRCLNNLRWLEVRNCDSLE-EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
.+++.|+++++. +.. ..|.. +..+++|++|+++++..+. .+ |..+ ..+++|++|+++++.....+
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~---------p~~l-~~l~~L~~L~Ls~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSS-LANLPYLNFLYIGGINNLVGPI---------PPAI-AKLTQLHYLYITHTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGG-GGGCTTCSEEEEEEETTEESCC---------CGGG-GGCTTCSEEEEEEECCEEEC
T ss_pred ceEEEEECCCCC-ccCCcccChh-HhCCCCCCeeeCCCCCcccccC---------ChhH-hcCCCCCEEECcCCeeCCcC
Confidence 689999999984 553 34443 7789999999999632343 33 4454 78899999999987544455
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
|.. +..+++|++|++.++. ++...| ..++.+++|++|+++++ .
T Consensus 118 p~~---~~~l~~L~~L~Ls~N~-l~~~~p--------------------------------~~~~~l~~L~~L~L~~N-~ 160 (313)
T 1ogq_A 118 PDF---LSQIKTLVTLDFSYNA-LSGTLP--------------------------------PSISSLPNLVGITFDGN-R 160 (313)
T ss_dssp CGG---GGGCTTCCEEECCSSE-EESCCC--------------------------------GGGGGCTTCCEEECCSS-C
T ss_pred CHH---HhCCCCCCEEeCCCCc-cCCcCC--------------------------------hHHhcCCCCCeEECcCC-c
Confidence 443 6788888888888775 331111 12345566666666664 3
Q ss_pred ceeeccCCchhhhhcc-cccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccccc
Q 014145 236 VQHLWKENDESNKAFA-NLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++...+..+ ..++ +|+.|+++++.....+|..+..++ |+.|+++++. +...... .+..+++|++|+++++..-
T Consensus 161 l~~~~p~~l---~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 161 ISGAIPDSY---GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM-LEGDASV-LFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CEEECCGGG---GCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE-EEECCGG-GCCTTSCCSEEECCSSEEC
T ss_pred ccCcCCHHH---hhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc-ccCcCCH-HHhcCCCCCEEECCCCcee
Confidence 442222222 4444 666676666544335555555554 7777776653 3322221 2455667777777665432
Q ss_pred chhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeecccc
Q 014145 315 EQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l~~~ 393 (430)
..+. ....+++|++|+++++.--..++. ....+++|++|+++++.-...+|.. ..+++|+.+++.++
T Consensus 235 ~~~~---------~~~~l~~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 235 FDLG---------KVGLSKNLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301 (313)
T ss_dssp CBGG---------GCCCCTTCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSS
T ss_pred eecC---------cccccCCCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCC
Confidence 1221 112256777777776532223333 2234677777777776444455554 45667777777554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.1e-16 Score=145.29 Aligned_cols=207 Identities=16% Similarity=0.096 Sum_probs=126.1
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
.++|++|+++++. +..+.... ...+++|++|+++++ .+..+.+.. +..+++|++|++++|..+..+
T Consensus 31 ~~~l~~L~l~~n~-i~~~~~~~---~~~~~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~-------- 96 (285)
T 1ozn_A 31 PAASQRIFLHGNR-ISHVPAAS---FRACRNLTILWLHSN-VLARIDAAA-FTGLALLEQLDLSDNAQLRSV-------- 96 (285)
T ss_dssp CTTCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSCTTCCCC--------
T ss_pred CCCceEEEeeCCc-CCccCHHH---cccCCCCCEEECCCC-ccceeCHhh-cCCccCCCEEeCCCCCCcccc--------
Confidence 3567777777665 55543221 145667777777765 344433332 556677777777776545444
Q ss_pred CccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeee
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
+...+..+++|++|+++++. +..++. ..+..+++|++|++.++. +..+.+
T Consensus 97 -~~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~l~~L~~L~l~~n~-------------------l~~~~~------- 146 (285)
T 1ozn_A 97 -DPATFHGLGRLHTLHLDRCG-LQELGP--GLFRGLAALQYLYLQDNA-------------------LQALPD------- 146 (285)
T ss_dssp -CTTTTTTCTTCCEEECTTSC-CCCCCT--TTTTTCTTCCEEECCSSC-------------------CCCCCT-------
T ss_pred -CHHHhcCCcCCCEEECCCCc-CCEECH--hHhhCCcCCCEEECCCCc-------------------ccccCH-------
Confidence 22333566677777776653 322311 114455666666665543 222220
Q ss_pred cCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcc
Q 014145 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 289 (430)
...+.+++|++|+++++ .++.+....+ ..+++|+.|+++++......|..+..+++|+.|+++++ .+.
T Consensus 147 -------~~~~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~ 214 (285)
T 1ozn_A 147 -------DTFRDLGNLTHLFLHGN-RISSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLS 214 (285)
T ss_dssp -------TTTTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCS
T ss_pred -------hHhccCCCccEEECCCC-cccccCHHHh---cCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCC
Confidence 12356788888888885 6777766555 67888999999887544444667778888999999886 455
Q ss_pred cccCchhhccccccceEeeccccc
Q 014145 290 NVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 290 ~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.++.. .+..+++|++|++++++.
T Consensus 215 ~~~~~-~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 215 ALPTE-ALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CCCHH-HHTTCTTCCEEECCSSCE
T ss_pred cCCHH-HcccCcccCEEeccCCCc
Confidence 55432 356788888888887653
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-15 Score=150.52 Aligned_cols=155 Identities=20% Similarity=0.212 Sum_probs=85.1
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++|++|++++| .+..+ |. +.++++|++|++++| .+..+ |.. .++|++|+++++ .+..++.
T Consensus 131 ~~L~~L~L~~n-~l~~l-p~--~~~l~~L~~L~l~~N-~l~~l---------p~~----~~~L~~L~L~~n-~l~~l~~- 190 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKL-PE--LQNSSFLKIIDVDNN-SLKKL---------PDL----PPSLEFIAAGNN-QLEELPE- 190 (454)
T ss_dssp TTCCEEECCSS-CCSSC-CC--CTTCTTCCEEECCSS-CCSCC---------CCC----CTTCCEEECCSS-CCSSCCC-
T ss_pred CCCCEEECcCC-CCCCC-cc--cCCCCCCCEEECCCC-cCccc---------CCC----cccccEEECcCC-cCCcCcc-
Confidence 46666666665 34442 22 455666666666666 23333 221 246677777665 3444442
Q ss_pred ccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 159 TENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
+..+++|++|.+.+|. ++.++ +.+|+.|++++|.+..+. ..+.+++|++|+++++ .+
T Consensus 191 ---~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp----------------~~~~l~~L~~L~l~~N-~l 249 (454)
T 1jl5_A 191 ---LQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELP----------------ELQNLPFLTTIYADNN-LL 249 (454)
T ss_dssp ---CTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCC----------------CCTTCTTCCEEECCSS-CC
T ss_pred ---ccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCccc----------------ccCCCCCCCEEECCCC-cC
Confidence 5567777777777664 44443 456777777777655433 2455666777777664 34
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccC
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 285 (430)
+.++ ..+++|+.|+++++. +..+|.. +++|+.|++++|
T Consensus 250 ~~l~-------~~~~~L~~L~l~~N~-l~~l~~~---~~~L~~L~ls~N 287 (454)
T 1jl5_A 250 KTLP-------DLPPSLEALNVRDNY-LTDLPEL---PQSLTFLDVSEN 287 (454)
T ss_dssp SSCC-------SCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS
T ss_pred Cccc-------ccccccCEEECCCCc-ccccCcc---cCcCCEEECcCC
Confidence 4332 223566666666642 3334432 255666666654
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-17 Score=154.19 Aligned_cols=112 Identities=18% Similarity=0.275 Sum_probs=61.3
Q ss_pred cchhhhhhhcc-cCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 37 NSTIQKCYEEM-IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 37 ~~~~~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
+..+.+.+..+ ..+++|++|+++++. ++.+.... ...+++|++|++++|. +...++ +..+++|++|++++|
T Consensus 19 ~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 19 DSSLKQALASLRQSAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN 90 (317)
T ss_dssp TTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHH---HTTCTTCCEEECTTSC-CEEEEE---ETTCTTCCEEECCSS
T ss_pred ccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHH---hhCCCcCCEEECCCCc-CCcchh---hhhcCCCCEEECcCC
Confidence 34444444443 245577777777665 55432111 1456777777777763 433333 456777777777776
Q ss_pred CCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+..+ ...++|++|+++++ .+..++. ..+++|++|++.++.
T Consensus 91 -~l~~l--------------~~~~~L~~L~l~~n-~l~~~~~-----~~~~~L~~L~l~~N~ 131 (317)
T 3o53_A 91 -YVQEL--------------LVGPSIETLHAANN-NISRVSC-----SRGQGKKNIYLANNK 131 (317)
T ss_dssp -EEEEE--------------EECTTCCEEECCSS-CCSEEEE-----CCCSSCEEEECCSSC
T ss_pred -ccccc--------------cCCCCcCEEECCCC-ccCCcCc-----cccCCCCEEECCCCC
Confidence 34444 22367777777764 3333322 235566666666654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-15 Score=154.64 Aligned_cols=87 Identities=14% Similarity=0.114 Sum_probs=51.0
Q ss_pred ccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCC
Q 014145 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ 377 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~ 377 (430)
..++.|+.|+++++.....+.. .....+++|++|+++++ .++.+... ....+++|++|+++++ +++.++.
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~-------~~~~~l~~L~~L~Ls~N-~L~~l~~~-~f~~l~~L~~L~Ls~N-~l~~l~~ 535 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLP-------DIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHN-NFFSLDT 535 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEEC-------SCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS-CCCBCCC
T ss_pred ccchhhhhhhhhhcccccccCc-------hhhhhccccCEEECCCC-ccCCcChH-HHcCCCCCCEEECCCC-cCCCCCh
Confidence 3445566666655543332211 11223677888888876 66666542 2335778888888776 4555543
Q ss_pred -CCcCCCCceeeeccccC
Q 014145 378 -GVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 378 -~~~~~~~L~~l~l~~~~ 394 (430)
.+..+++|+.|++.++.
T Consensus 536 ~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 536 FPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp GGGTTCTTCCEEECTTSC
T ss_pred hHHhCCCCCCEEECCCCc
Confidence 34567788888886643
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-15 Score=147.33 Aligned_cols=178 Identities=22% Similarity=0.235 Sum_probs=84.0
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++++.|+++++ ++..+.+.. +.++++|++|++++| .+..+ +...+..+++|++|+++++ .+..++..
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 141 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADT-FRHLHHLEVLQLGRN-SIRQI---------EVGAFNGLASLNTLELFDN-WLTVIPSG 141 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTT-TTTCTTCCEEECCSS-CCCEE---------CTTTTTTCTTCCEEECCSS-CCSBCCTT
T ss_pred CCccEEECcCC-cCceECHHH-cCCCCCCCEEECCCC-ccCCc---------ChhhccCcccCCEEECCCC-cCCccChh
Confidence 45566666554 334333322 445556666666555 34443 2223355555666665553 33333221
Q ss_pred ccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee
Q 014145 159 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (430)
.+..+++|++|++.++. ++.+++ .....+++|++|++++++.++.
T Consensus 142 --~~~~l~~L~~L~L~~N~-l~~~~~--------------------------------~~~~~l~~L~~L~l~~~~~l~~ 186 (452)
T 3zyi_A 142 --AFEYLSKLRELWLRNNP-IESIPS--------------------------------YAFNRVPSLMRLDLGELKKLEY 186 (452)
T ss_dssp --TSSSCTTCCEEECCSCC-CCEECT--------------------------------TTTTTCTTCCEEECCCCTTCCE
T ss_pred --hhcccCCCCEEECCCCC-cceeCH--------------------------------hHHhcCCcccEEeCCCCCCccc
Confidence 13345555555555443 322221 1123455566666655555555
Q ss_pred eccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 239 LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 239 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
+....+ ..+++|+.|+++++ .+..+| .+..+++|++|+++++. +..++.. .+..+++|++|+++++
T Consensus 187 i~~~~~---~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 187 ISEGAF---EGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNH-FPEIRPG-SFHGLSSLKKLWVMNS 252 (452)
T ss_dssp ECTTTT---TTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSC-CSEECGG-GGTTCTTCCEEECTTS
T ss_pred cChhhc---cCCCCCCEEECCCC-cccccc-cccccccccEEECcCCc-CcccCcc-cccCccCCCEEEeCCC
Confidence 544444 45555666665554 233333 24455555555555542 3333221 2344555555555544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.67 E-value=6.4e-15 Score=146.37 Aligned_cols=291 Identities=15% Similarity=0.130 Sum_probs=146.6
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++|+.|+++++ .+..+ |. .+++|++|++++| .+..+ + ...++|++|+++++ .+..+|.
T Consensus 91 ~~L~~L~l~~n-~l~~l-p~----~~~~L~~L~l~~n-~l~~l---------~----~~~~~L~~L~L~~n-~l~~lp~- 148 (454)
T 1jl5_A 91 PHLESLVASCN-SLTEL-PE----LPQSLKSLLVDNN-NLKAL---------S----DLPPLLEYLGVSNN-QLEKLPE- 148 (454)
T ss_dssp TTCSEEECCSS-CCSSC-CC----CCTTCCEEECCSS-CCSCC---------C----SCCTTCCEEECCSS-CCSSCCC-
T ss_pred CCCCEEEccCC-cCCcc-cc----ccCCCcEEECCCC-ccCcc---------c----CCCCCCCEEECcCC-CCCCCcc-
Confidence 46666666654 33432 22 1356666666665 33333 1 11257888888875 4555652
Q ss_pred ccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccC---CCceeeecCccccccc-CCCCCCCCEEeccc
Q 014145 159 TENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTS---EENFFLTDQIQPLFDE-KVAFPQLRYLELSR 232 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~---~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~ 232 (430)
+..+++|++|++.++. ++.++ +.+|+.|++++|.+.++.. ++++..++-...-+.. ....++|++|++++
T Consensus 149 ---~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 149 ---LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN 224 (454)
T ss_dssp ---CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred ---cCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcC
Confidence 6778888888888775 65554 4578888888887665432 2222211100000000 11234677777776
Q ss_pred CCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+ .++.++ .+ ..+++|+.|+++++ .+..+|. .+++|+.|++++|. +..++. .+++|++|+++++.
T Consensus 225 n-~l~~lp--~~---~~l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N~-l~~l~~-----~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 225 N-ILEELP--EL---QNLPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDNY-LTDLPE-----LPQSLTFLDVSENI 288 (454)
T ss_dssp S-CCSSCC--CC---TTCTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC
T ss_pred C-cCCccc--cc---CCCCCCCEEECCCC-cCCcccc---cccccCEEECCCCc-ccccCc-----ccCcCCEEECcCCc
Confidence 5 444443 13 56677777777775 3444443 23677777777653 444432 23677788877753
Q ss_pred ccchhhccc--cc------ccCCcceee-cccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCC
Q 014145 313 MIEQIIQLQ--VG------EEAKGCVVF-EELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAP 383 (430)
Q Consensus 313 ~l~~~~~~~--~~------~~~~~~~~~-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 383 (430)
+..+.... .. ..-.....+ ++|++|+++++ .++.++. .+++|++|++++| .++.+|. .++
T Consensus 289 -l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~L~~N-~l~~lp~---~l~ 357 (454)
T 1jl5_A 289 -FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPA-----LPPRLERLIASFN-HLAEVPE---LPQ 357 (454)
T ss_dssp -CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSS-CCSCCCC---CCT
T ss_pred -cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-ccccccc-----cCCcCCEEECCCC-ccccccc---hhh
Confidence 22221000 00 000000011 35666666664 4444432 2578999999887 5667776 478
Q ss_pred CceeeeccccCCCC--CcccccCch------------hHHHHHHHHHhhcccc
Q 014145 384 KLNKVKPTEEEDGD--DEGCWEGNL------------NDTIKKLFNEMNSKEK 422 (430)
Q Consensus 384 ~L~~l~l~~~~~~~--~~~~~~~~~------------~~~l~~~~~~~~~~~~ 422 (430)
+|+++++.++.... ....+-... ..+++.+..+.+.+..
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 99999997754222 111111111 1467777777777664
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.1e-15 Score=146.09 Aligned_cols=181 Identities=20% Similarity=0.252 Sum_probs=93.9
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
...++++.|+++++ ++..+.+.. +.++++|++|++++| .+..+ +.+.+..+++|++|+++++ .+..+
T Consensus 61 ~~~~~l~~L~L~~n-~i~~~~~~~-~~~l~~L~~L~Ls~n-~i~~i---------~~~~~~~l~~L~~L~L~~n-~l~~~ 127 (440)
T 3zyj_A 61 GISTNTRLLNLHEN-QIQIIKVNS-FKHLRHLEILQLSRN-HIRTI---------EIGAFNGLANLNTLELFDN-RLTTI 127 (440)
T ss_dssp CCCTTCSEEECCSC-CCCEECTTT-TSSCSSCCEEECCSS-CCCEE---------CGGGGTTCSSCCEEECCSS-CCSSC
T ss_pred CCCCCCcEEEccCC-cCCeeCHHH-hhCCCCCCEEECCCC-cCCcc---------ChhhccCCccCCEEECCCC-cCCee
Confidence 33467777777776 345443333 567777888887777 35555 3333466777777777775 45445
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+.. .+..+++|++|++.++. ++.+++ .....+++|++|++++++.
T Consensus 128 ~~~--~~~~l~~L~~L~L~~N~-i~~~~~--------------------------------~~~~~l~~L~~L~l~~~~~ 172 (440)
T 3zyj_A 128 PNG--AFVYLSKLKELWLRNNP-IESIPS--------------------------------YAFNRIPSLRRLDLGELKR 172 (440)
T ss_dssp CTT--TSCSCSSCCEEECCSCC-CCEECT--------------------------------TTTTTCTTCCEEECCCCTT
T ss_pred CHh--HhhccccCceeeCCCCc-ccccCH--------------------------------HHhhhCcccCEeCCCCCCC
Confidence 332 14566777777776654 443321 0123344555555555444
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
+..+....+ ..+++|+.|+++++ .+..+| .+..+++|++|+++++ .+..++.. .+..+++|++|+++++
T Consensus 173 l~~i~~~~~---~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 173 LSYISEGAF---EGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPG-SFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CCEECTTTT---TTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTC
T ss_pred cceeCcchh---hcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChh-hhccCccCCEEECCCC
Confidence 444443333 44455555555553 233333 2334445555555544 23333221 2334445555555443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-15 Score=140.46 Aligned_cols=214 Identities=17% Similarity=0.176 Sum_probs=121.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccC--chhHHHhcCCCCEEEEecCC
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAI--PANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~--~~~~~~~l~~L~~L~l~~~~ 116 (430)
.++++|.++ .++|++|+++++. ++.++... ...+++|++|+++++. +.... +.. +..+++|++|++++|.
T Consensus 18 ~l~~ip~~~--~~~l~~L~L~~n~-l~~i~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~~-~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 18 GLTSVPTGI--PSSATRLELESNK-LQSLPHGV---FDKLTQLTKLSLSSNG-LSFKGCCSQS-DFGTTSLKYLDLSFNG 89 (306)
T ss_dssp CCSSCCSCC--CTTCCEEECCSSC-CCCCCTTT---TTTCTTCSEEECCSSC-CCEEEEEEHH-HHSCSCCCEEECCSCS
T ss_pred CcccCCCCC--CCCCCEEECCCCc-cCccCHhH---hhccccCCEEECCCCc-cCcccCcccc-cccccccCEEECCCCc
Confidence 355566543 3689999999876 66544322 1468899999999873 44321 233 5568999999999984
Q ss_pred CccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCC
Q 014145 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKE 196 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~ 196 (430)
+..+ |..+ ..+++|++|+++++ .+..++... .+..+++|++|++.+|. ++...+
T Consensus 90 -i~~l---------~~~~-~~l~~L~~L~l~~n-~l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~------------ 143 (306)
T 2z66_A 90 -VITM---------SSNF-LGLEQLEHLDFQHS-NLKQMSEFS-VFLSLRNLIYLDISHTH-TRVAFN------------ 143 (306)
T ss_dssp -EEEE---------EEEE-ETCTTCCEEECTTS-EEESSTTTT-TTTTCTTCCEEECTTSC-CEECST------------
T ss_pred -cccC---------hhhc-CCCCCCCEEECCCC-cccccccch-hhhhccCCCEEECCCCc-CCccch------------
Confidence 5555 3443 67889999999885 444443211 15677888888888775 332211
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee-eccCCchhhhhcccccEEEeecCCCcccccCCcccCC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH-LWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~ 275 (430)
.....+++|++|+++++ .+.. ..+..+ ..+++|+.|+++++......+..+..++
T Consensus 144 --------------------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 144 --------------------GIFNGLSSLEVLKMAGN-SFQENFLPDIF---TELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp --------------------TTTTTCTTCCEEECTTC-EEGGGEECSCC---TTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred --------------------hhcccCcCCCEEECCCC-ccccccchhHH---hhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 11234455555555553 2221 122233 4455566666655432222234444555
Q ss_pred CCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+|++|+++++. +..++.. .+..+++|++|+++++.
T Consensus 200 ~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 200 SLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TCCEEECTTSC-CSBCCSG-GGTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCc-cCccChh-hccCcccCCEeECCCCC
Confidence 66666665542 3333322 13445566666665553
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=149.06 Aligned_cols=243 Identities=13% Similarity=0.066 Sum_probs=155.0
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+++|+.|+++++ ++...++. .+..+++|++|++++|. +... +. +..+++|++|+++++ .+..++
T Consensus 32 ~~~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~-l~~~---------~~--~~~l~~L~~L~Ls~n-~l~~l~ 96 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQISAA-DLAPFTKLELLNLSSNV-LYET---------LD--LESLSTLRTLDLNNN-YVQELL 96 (317)
T ss_dssp TGGGCSEEECTTS-CCCCCCHH-HHTTCTTCCEEECTTSC-CEEE---------EE--ETTCTTCCEEECCSS-EEEEEE
T ss_pred cCCCCCEEECcCC-ccCcCCHH-HhhCCCcCCEEECCCCc-CCcc---------hh--hhhcCCCCEEECcCC-cccccc
Confidence 4678999999997 46664443 47889999999999984 5544 12 377889999999986 344442
Q ss_pred CCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccC
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (430)
..++|++|.+.++. ++..+ .++|+.|++++|.+..+.+ ...+.+++|+.|+++++
T Consensus 97 -------~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~l~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 97 -------VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp -------ECTTCCEEECCSSC-CSEEEECCCSSCEEEECCSSCCCSGGG--------------BCTGGGSSEEEEECTTS
T ss_pred -------CCCCcCEEECCCCc-cCCcCccccCCCCEEECCCCCCCCccc--------------hhhhccCCCCEEECCCC
Confidence 34788888888875 55443 4567888888887665431 12345678888888875
Q ss_pred CCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.++.+....+. ..+++|+.|+++++. +..++. ...+++|++|+++++ .+..++.. +..+++|++|+++++.
T Consensus 155 -~l~~~~~~~~~--~~l~~L~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N~- 225 (317)
T 3o53_A 155 -EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK- 225 (317)
T ss_dssp -CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-
T ss_pred -CCCcccHHHHh--hccCcCCEEECCCCc-Cccccc-ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCCc-
Confidence 55554433321 356788888888763 454443 234777888888775 45555442 5567778888887763
Q ss_pred cchhhcccccccCCcceeecccceEeccCCCCC-ceeccCCcccCCCCccEEeeccCCCCccc
Q 014145 314 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVRQCPTMKIF 375 (430)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 375 (430)
+..++ .....+++|+.|++.+++-- ..++. ....+++|+.+++.++..++..
T Consensus 226 l~~l~--------~~~~~l~~L~~L~l~~N~~~~~~~~~--~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 226 LVLIE--------KALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCEEC--------TTCCCCTTCCEEECTTCCCBHHHHHH--HHHTCHHHHHHHHHHHHHHHSS
T ss_pred ccchh--------hHhhcCCCCCEEEccCCCccCcCHHH--HHhccccceEEECCCchhccCC
Confidence 33332 12223677777777776543 12221 2234677777777766665443
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-15 Score=142.65 Aligned_cols=230 Identities=20% Similarity=0.210 Sum_probs=175.2
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCC
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDS 117 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~ 117 (430)
+.++++|.++ ++++++|+++++. ++.++.+. + ..+++|++|+++++. +.+.++.+.+.++++|.++.+.++..
T Consensus 19 ~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 19 SKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TTCCSCCTTC--CTTCSEEEEESCC-CSEECTTS-S--TTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CCCCccCcCc--CCCCCEEEccCCc-CCCcCHHH-H--cCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCc
Confidence 3466777665 4689999999877 88876543 2 568999999999985 33434544567888888877666667
Q ss_pred ccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccC-------CCceEE
Q 014145 118 LEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFIS-------NSVVHV 190 (430)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-------~~L~~L 190 (430)
+..+ +.+.+..+++|++|+++++ .+..++... .....++..+.+.++..++.++. ..++.|
T Consensus 92 l~~l---------~~~~f~~l~~L~~L~l~~n-~l~~~~~~~--~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 92 LLYI---------NPEAFQNLPNLQYLLISNT-GIKHLPDVH--KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp CCEE---------CTTSBCCCTTCCEEEEEEE-CCSSCCCCT--TCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred cccc---------Cchhhhhcccccccccccc-ccccCCchh--hcccchhhhhhhccccccccccccchhhcchhhhhh
Confidence 8887 5666789999999999986 455554321 34556788888888877776652 357889
Q ss_pred EecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC
Q 014145 191 TTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP 270 (430)
Q Consensus 191 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 270 (430)
++++|.+.++. ......++|++|.+.+++.++.++...+ ..+++|+.|+++++ .++.+|..
T Consensus 160 ~L~~N~i~~i~---------------~~~f~~~~L~~l~l~~~n~l~~i~~~~f---~~l~~L~~LdLs~N-~l~~lp~~ 220 (350)
T 4ay9_X 160 WLNKNGIQEIH---------------NSAFNGTQLDELNLSDNNNLEELPNDVF---HGASGPVILDISRT-RIHSLPSY 220 (350)
T ss_dssp ECCSSCCCEEC---------------TTSSTTEEEEEEECTTCTTCCCCCTTTT---TTEECCSEEECTTS-CCCCCCSS
T ss_pred ccccccccCCC---------------hhhccccchhHHhhccCCcccCCCHHHh---ccCcccchhhcCCC-CcCccChh
Confidence 99999888765 2233456899999998888999887777 88999999999986 67888753
Q ss_pred cccCCCCCEEEEccCCCcccccCchhhccccccceEeecc
Q 014145 271 SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD 310 (430)
Q Consensus 271 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~ 310 (430)
.+.+|++|.+.++..++.+|. +..+++|+.+++.+
T Consensus 221 --~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 --GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp --SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECSC
T ss_pred --hhccchHhhhccCCCcCcCCC---chhCcChhhCcCCC
Confidence 477899999999999999885 67889999999864
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=132.05 Aligned_cols=202 Identities=16% Similarity=0.119 Sum_probs=130.1
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
++|++|+++++. ++.++... ...+++|++|+++++..+..+++.. +.++++|++|++++|..++.+
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~~---~~~l~~L~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~l~~~n~l~~i--------- 96 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSHA---FSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIEIRNTRNLTYI--------- 96 (239)
T ss_dssp TTCCEEEEESCC-CSEECTTT---TTTCTTCCEEEEECCSSCCEECTTT-EESCTTCCEEEEEEETTCCEE---------
T ss_pred CcccEEEEeCCc-ceEECHHH---ccCCCCCcEEeCCCCCCcceeCHhH-cCCCcCCcEEECCCCCCeeEc---------
Confidence 378888888776 77654432 1467888888888874455544432 567888888888884467776
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCcc---EEEeccCCCcccccCCCceEEEecCCCCCcccCCCcee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELR---YLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFF 207 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~---~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 207 (430)
+...+..+++|++|+++++ .+..+|. ...+++|+ +|++.+++.++.+++.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n-~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~---------------------- 149 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNT-GLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN---------------------- 149 (239)
T ss_dssp CTTSEECCTTCCEEEEEEE-CCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT----------------------
T ss_pred CHHHhCCCCCCCEEeCCCC-CCccccc----cccccccccccEEECCCCcchhhcCcc----------------------
Confidence 4444577888888888875 3444543 34455555 7777766445443321
Q ss_pred eecCcccccccCCCCCCCC-EEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccC-CCCCEEEEcc
Q 014145 208 LTDQIQPLFDEKVAFPQLR-YLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHL-ENLATLEVSK 284 (430)
Q Consensus 208 ~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l-~~L~~L~l~~ 284 (430)
....+++|+ +|+++++ +++.++...+ .. ++|+.|+++++..++.++. .+..+ ++|+.|++++
T Consensus 150 ----------~~~~l~~L~~~L~l~~n-~l~~i~~~~~---~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 150 ----------AFQGLCNETLTLKLYNN-GFTSVQGYAF---NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp ----------TTTTTBSSEEEEECCSC-CCCEECTTTT---TT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred ----------cccchhcceeEEEcCCC-CCcccCHhhc---CC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 134567777 8888774 5666655544 33 6788888887654666643 34566 7888888887
Q ss_pred CCCcccccCchhhccccccceEeeccccc
Q 014145 285 CHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 285 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
+ .+..++. ..+++|+.|++.++..
T Consensus 215 N-~l~~l~~----~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 215 T-SVTALPS----KGLEHLKELIARNTWT 238 (239)
T ss_dssp C-CCCCCCC----TTCTTCSEEECTTC--
T ss_pred C-ccccCCh----hHhccCceeeccCccC
Confidence 4 4666653 2567788888877653
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=130.58 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=114.9
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++|+.|+++++ ++..+++ ..+.++++|++|++++|..++.+ +...+..+++|++|++++|..+..++..
T Consensus 31 ~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i---------~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQL---------ESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp TTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEE---------CTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCccee---------CHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 47888888886 4555444 23667888888888888657666 4444567788888888875566666432
Q ss_pred ccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCC---EEecccCCC
Q 014145 159 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLR---YLELSRLHK 235 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~ 235 (430)
.+..+++|++|++.++. ++.++ ....+++|+ .|+++++..
T Consensus 100 --~f~~l~~L~~L~l~~n~-l~~lp----------------------------------~~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 100 --ALKELPLLKFLGIFNTG-LKMFP----------------------------------DLTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp --SEECCTTCCEEEEEEEC-CCSCC----------------------------------CCTTCCBCCSEEEEEEESCTT
T ss_pred --HhCCCCCCCEEeCCCCC-Ccccc----------------------------------ccccccccccccEEECCCCcc
Confidence 14567777777777664 33211 123445555 888887657
Q ss_pred ceeeccCCchhhhhccccc-EEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccc-cccceEeeccc
Q 014145 236 VQHLWKENDESNKAFANLI-RLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESL-VNLGRMKIADC 311 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l-~~L~~L~l~~c 311 (430)
++.+....+ ..+++|+ .|+++++ .+..+|......++|++|++++++.++.++.. .+..+ ++|++|+++++
T Consensus 143 l~~i~~~~~---~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~-~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 143 MTSIPVNAF---QGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD-AFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp CCEECTTTT---TTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTT-TTTTCSBCCSEEECTTC
T ss_pred hhhcCcccc---cchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHH-HhhccccCCcEEECCCC
Confidence 777766655 6777888 8888775 34566654433367777777776556655443 23445 66667766653
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-14 Score=134.35 Aligned_cols=183 Identities=17% Similarity=0.171 Sum_probs=107.4
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
..++|+.|+++++ ++.. .+...+.++++|++|++++|. +..+.. .+..+ ..+++|++|+++++ .+..++
T Consensus 26 ~~~~l~~L~L~~n-~l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~~~------~~~~~-~~~~~L~~L~Ls~n-~i~~l~ 94 (306)
T 2z66_A 26 IPSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSSNG-LSFKGC------CSQSD-FGTTSLKYLDLSFN-GVITMS 94 (306)
T ss_dssp CCTTCCEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSC-CCEEEE------EEHHH-HSCSCCCEEECCSC-SEEEEE
T ss_pred CCCCCCEEECCCC-ccCc-cCHhHhhccccCCEEECCCCc-cCcccC------ccccc-ccccccCEEECCCC-ccccCh
Confidence 3467888888876 3554 343445678888888888773 433210 01121 34677777777775 344443
Q ss_pred CCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
.. +..+++|++|++.++. ++..++ +.....+++|++|+++++ .+
T Consensus 95 ~~---~~~l~~L~~L~l~~n~-l~~~~~-------------------------------~~~~~~l~~L~~L~l~~n-~l 138 (306)
T 2z66_A 95 SN---FLGLEQLEHLDFQHSN-LKQMSE-------------------------------FSVFLSLRNLIYLDISHT-HT 138 (306)
T ss_dssp EE---EETCTTCCEEECTTSE-EESSTT-------------------------------TTTTTTCTTCCEEECTTS-CC
T ss_pred hh---cCCCCCCCEEECCCCc-cccccc-------------------------------chhhhhccCCCEEECCCC-cC
Confidence 32 4556666666666553 222111 012356778888888875 45
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcc-cccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
.......+ ..+++|++|+++++.... .+|..+..+++|++|++++|. +..++.. .+..+++|++|+++++
T Consensus 139 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~N 209 (306)
T 2z66_A 139 RVAFNGIF---NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMSHN 209 (306)
T ss_dssp EECSTTTT---TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTS
T ss_pred Cccchhhc---ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHH-HhcCCCCCCEEECCCC
Confidence 55544444 667788888888764433 356666677778888887763 4444322 2455666777777665
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-17 Score=167.53 Aligned_cols=149 Identities=17% Similarity=0.289 Sum_probs=92.6
Q ss_pred ecccccchhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEE
Q 014145 32 WEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLE 111 (430)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~ 111 (430)
|++.....+..++ ..+++|++|+++++. +.+..... +. ..+++|+.|++++|..+.......+..++++|++|+
T Consensus 89 ~~~~~~~~l~~l~---~~~~~L~~L~L~~~~-~~~~~~~~-l~-~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~ 162 (594)
T 2p1m_B 89 WGGYVYPWIEAMS---SSYTWLEEIRLKRMV-VTDDCLEL-IA-KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162 (594)
T ss_dssp SCCBCHHHHHHHH---HHCTTCCEEEEESCB-CCHHHHHH-HH-HHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEE
T ss_pred ccchhhHHHHHHH---HhCCCCCeEEeeCcE-EcHHHHHH-HH-HhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEe
Confidence 5555544444444 357899999999876 44311111 00 247899999999986555432334466899999999
Q ss_pred EecCCCccEecccccccCCccCcCCcCCccceeecCCcc-ccc--cccCCccccccCCCccEEEeccCCCccccc-----
Q 014145 112 VRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP-KLK--RFCNFTENIIEMPELRYLAIENCPDMETFI----- 183 (430)
Q Consensus 112 l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~-~l~--~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----- 183 (430)
+++|. +... +.... ..+...+++|++|+++++. .+. .+.. ....+++|++|++.+|..++.++
T Consensus 163 L~~~~-i~~~----~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~---l~~~~~~L~~L~L~~~~~~~~l~~~~~~ 233 (594)
T 2p1m_B 163 LRESD-VDDV----SGHWL-SHFPDTYTSLVSLNISCLASEVSFSALER---LVTRCPNLKSLKLNRAVPLEKLATLLQR 233 (594)
T ss_dssp CTTCE-EECC----CGGGG-GGSCTTCCCCCEEECTTCCSCCCHHHHHH---HHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred CcCCc-cCCc----chHHH-HHHhhcCCcCcEEEecccCCcCCHHHHHH---HHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence 99985 4332 11111 1223567899999998875 111 1111 03457899999999886665544
Q ss_pred CCCceEEEecCC
Q 014145 184 SNSVVHVTTDNK 195 (430)
Q Consensus 184 ~~~L~~L~l~~~ 195 (430)
.++|++|.+.++
T Consensus 234 ~~~L~~L~l~~~ 245 (594)
T 2p1m_B 234 APQLEELGTGGY 245 (594)
T ss_dssp CTTCSEEECSBC
T ss_pred CCcceEcccccc
Confidence 567888876655
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=151.71 Aligned_cols=235 Identities=14% Similarity=0.083 Sum_probs=151.4
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+++|+.|+++++ .+..++|.. +..+++|++|++++|. +... +. +..+++|++|+++++ .+..++
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~---------~~--l~~l~~L~~L~Ls~N-~l~~l~ 96 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAAD-LAPFTKLELLNLSSNV-LYET---------LD--LESLSTLRTLDLNNN-YVQELL 96 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGG-GTTCTTCCEEECTTSC-CEEE---------EE--CTTCTTCCEEECCSS-EEEEEE
T ss_pred cCCCccEEEeeCC-cCCCCCHHH-HhCCCCCCEEEeeCCC-CCCC---------cc--cccCCCCCEEEecCC-cCCCCC
Confidence 4668999999997 466655443 7889999999999984 5554 22 478899999999986 454443
Q ss_pred CCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccC
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (430)
..++|++|++.+|. ++..+ .++|+.|++++|.+.++.+ ..++.+++|+.|+++++
T Consensus 97 -------~~~~L~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 97 -------VGPSIETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRD--------------LDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp -------ECTTCCEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGG--------------BCGGGGSSEEEEECTTS
T ss_pred -------CCCCcCEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCc--------------hhhcCCCCCCEEECCCC
Confidence 34888999998876 55444 4577888888887665431 12355778888888875
Q ss_pred CCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
.+....+..+. ..+++|+.|+++++. +..++. ...+++|+.|+++++ .+..++.. +..+++|+.|+++++.
T Consensus 155 -~l~~~~~~~l~--~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N~- 225 (487)
T 3oja_A 155 -EIDTVNFAELA--ASSDTLEHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNNK- 225 (487)
T ss_dssp -CCCEEEGGGGG--GGTTTCCEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTSC-
T ss_pred -CCCCcChHHHh--hhCCcccEEecCCCc-cccccc-cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCCc-
Confidence 55554443331 356788888888764 444443 335778888888876 35555442 5667788888887754
Q ss_pred cchhhcccccccCCcceeecccceEeccCCCCC-ceeccCCcccCCCCccEEeec
Q 014145 314 IEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSL-TSFCLGNYALEFPSLEHVVVR 367 (430)
Q Consensus 314 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~~~~~~~~~~~~~L~~L~l~ 367 (430)
+..++ .....+++|+.|++.+++-. ..++. ....++.|+.+.+.
T Consensus 226 l~~lp--------~~l~~l~~L~~L~l~~N~l~c~~~~~--~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 226 LVLIE--------KALRFSQNLEHFDLRGNGFHCGTLRD--FFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCEEC--------TTCCCCTTCCEEECTTCCBCHHHHHH--HHTTCHHHHHHHHH
T ss_pred Ccccc--------hhhccCCCCCEEEcCCCCCcCcchHH--HHHhCCCCcEEecc
Confidence 33332 12223667777777776543 12221 12235666666664
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-14 Score=131.35 Aligned_cols=207 Identities=16% Similarity=0.168 Sum_probs=129.4
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
...++|+.|+++++ .+..+++. .+..+++|++|++++| .+..+ +...+..+++|++|+++++..+..+
T Consensus 29 ~~~~~l~~L~l~~n-~i~~~~~~-~~~~~~~L~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 29 GIPAASQRIFLHGN-RISHVPAA-SFRACRNLTILWLHSN-VLARI---------DAAAFTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp TCCTTCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEE---------CTTTTTTCTTCCEEECCSCTTCCCC
T ss_pred CCCCCceEEEeeCC-cCCccCHH-HcccCCCCCEEECCCC-cccee---------CHhhcCCccCCCEEeCCCCCCcccc
Confidence 34567888888776 35554333 3567778888888777 45554 2233466777888888776545555
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+.. .+..+++|++|++.++. ++..++ .....+++|++|+++++ .
T Consensus 97 ~~~--~~~~l~~L~~L~l~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~l~~n-~ 140 (285)
T 1ozn_A 97 DPA--TFHGLGRLHTLHLDRCG-LQELGP--------------------------------GLFRGLAALQYLYLQDN-A 140 (285)
T ss_dssp CTT--TTTTCTTCCEEECTTSC-CCCCCT--------------------------------TTTTTCTTCCEEECCSS-C
T ss_pred CHH--HhcCCcCCCEEECCCCc-CCEECH--------------------------------hHhhCCcCCCEEECCCC-c
Confidence 221 14556666666666654 222211 12356788999999885 5
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++.+....+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++. +..+... .+..+++|++|+++++. +
T Consensus 141 l~~~~~~~~---~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n~-l 213 (285)
T 1ozn_A 141 LQALPDDTF---RDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPH-AFRDLGRLMTLYLFANN-L 213 (285)
T ss_dssp CCCCCTTTT---TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSC-C
T ss_pred ccccCHhHh---ccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHh-HccCcccccEeeCCCCc-C
Confidence 666655555 67888999999886 4555554 36678889999998864 4444322 35677888888888763 3
Q ss_pred chhhcccccccCCcceeecccceEeccCCC
Q 014145 315 EQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
..+... ....+++|++|++.+++
T Consensus 214 ~~~~~~-------~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 214 SALPTE-------ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp SCCCHH-------HHTTCTTCCEEECCSSC
T ss_pred CcCCHH-------HcccCcccCEEeccCCC
Confidence 332210 11226777777777654
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-16 Score=163.26 Aligned_cols=337 Identities=11% Similarity=0.034 Sum_probs=175.7
Q ss_pred ecccccchhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCC-cceEEEeCCCCCCccCchhHHHhcCCCCEE
Q 014145 32 WEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNN-LRHLVVDDCTNMLSAIPANLIRCLNNLRWL 110 (430)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 110 (430)
|++.....+..+. ..+++|++|+++++. +.+..... +. ..+++ |++|++++|..+.......+..++++|++|
T Consensus 96 ~~~~~~~~l~~l~---~~~~~L~~L~L~~~~-i~~~~~~~-l~-~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L 169 (592)
T 3ogk_B 96 WGGYVTPWVTEIS---NNLRQLKSVHFRRMI-VSDLDLDR-LA-KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169 (592)
T ss_dssp SCCBCHHHHHHHH---HHCTTCCEEEEESCB-CCHHHHHH-HH-HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEE
T ss_pred ccccchHHHHHHH---hhCCCCCeEEeeccE-ecHHHHHH-HH-HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEE
Confidence 4444433444333 257889999988775 44211100 00 12444 899999888643321122235578899999
Q ss_pred EEecCCCccEecccccccCCccCcCCcCCccceeecCCcccc----ccccCCccccccCCCccEEEeccCCCccccc---
Q 014145 111 EVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKL----KRFCNFTENIIEMPELRYLAIENCPDMETFI--- 183 (430)
Q Consensus 111 ~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l----~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--- 183 (430)
++++|. +... +.... ..+...+++|++|+++++..- ..++.. ...+++|++|++.+|. +..++
T Consensus 170 ~L~~~~-~~~~----~~~~l-~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~---~~~~~~L~~L~L~~~~-~~~l~~~~ 239 (592)
T 3ogk_B 170 LMEESS-FSEK----DGKWL-HELAQHNTSLEVLNFYMTEFAKISPKDLETI---ARNCRSLVSVKVGDFE-ILELVGFF 239 (592)
T ss_dssp ECTTCE-EECC----CSHHH-HHHHHHCCCCCEEECTTCCCSSCCHHHHHHH---HHHCTTCCEEECSSCB-GGGGHHHH
T ss_pred ECcccc-ccCc----chhHH-HHHHhcCCCccEEEeeccCCCccCHHHHHHH---HhhCCCCcEEeccCcc-HHHHHHHH
Confidence 998884 2221 00000 011245688888888765321 122211 4567888888888865 43333
Q ss_pred --CCCceEEEecCCCCC--------ccc---CCCceeeecCc-ccccccCCCCCCCCEEecccCCCceeeccCCchhhhh
Q 014145 184 --SNSVVHVTTDNKEPE--------KLT---SEENFFLTDQI-QPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKA 249 (430)
Q Consensus 184 --~~~L~~L~l~~~~~~--------~~~---~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 249 (430)
.++|+++.+++.... .+. +++.+.+.+.. ..+-.....+++|++|++++|. +...... .....
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~--~~~~~ 316 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHC--TLIQK 316 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHH--HHHTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHH--HHHHh
Confidence 567888887643211 111 11111111100 0011112345677777777764 3221110 11155
Q ss_pred cccccEEEeecCCCcccccCCcccCCCCCEEEEcc----------CCCcccccCchhhccccccceEeeccccccchhhc
Q 014145 250 FANLIRLKISECSKLQKLVTPSWHLENLATLEVSK----------CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQ 319 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~----------c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~ 319 (430)
+++|+.|++.++-.-..++.....+++|++|++++ |..+...........+++|++|++ .|..+.+...
T Consensus 317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~ 395 (592)
T 3ogk_B 317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESL 395 (592)
T ss_dssp CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHH
T ss_pred CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHH
Confidence 67777777764321122222234567788888874 666665433333456778888887 4444443211
Q ss_pred ccccccCCcceeecccceEeccC---CCCCceeccC----CcccCCCCccEEeeccCCC-Ccc--cCCCCcCCCCceeee
Q 014145 320 LQVGEEAKGCVVFEELGYLGLDC---LPSLTSFCLG----NYALEFPSLEHVVVRQCPT-MKI--FSQGVVDAPKLNKVK 389 (430)
Q Consensus 320 ~~~~~~~~~~~~~~~L~~L~l~~---c~~L~~~~~~----~~~~~~~~L~~L~l~~c~~-l~~--~~~~~~~~~~L~~l~ 389 (430)
.. -...+++|++|++.+ |..+++.+.. .....+++|++|++++|.. ++. +......+++|++|+
T Consensus 396 ~~------l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 396 ES------IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp HH------HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred HH------HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 00 001267788888873 5566654221 1123478999999987764 221 111123478899999
Q ss_pred ccccC
Q 014145 390 PTEEE 394 (430)
Q Consensus 390 l~~~~ 394 (430)
+.++.
T Consensus 470 L~~n~ 474 (592)
T 3ogk_B 470 LGYVG 474 (592)
T ss_dssp ECSCC
T ss_pred ccCCC
Confidence 96543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-14 Score=135.98 Aligned_cols=225 Identities=15% Similarity=0.146 Sum_probs=146.7
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++++.|+++++ ++..+ +.+.+.++++|++|++++|...+.+ |.+.+..++++.++...++..+..++.
T Consensus 29 ~~~l~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i---------~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 29 PRNAIELRFVLT-KLRVI-QKGAFSGFGDLEKIEISQNDVLEVI---------EADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CTTCSEEEEESC-CCSEE-CTTSSTTCTTCCEEEEECCTTCCEE---------CTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCCCEEEccCC-cCCCc-CHHHHcCCCCCCEEECcCCCCCCcc---------ChhHhhcchhhhhhhcccCCcccccCc
Confidence 467888888876 45554 3333677888888888888655555 455557777777766655566666643
Q ss_pred CccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCce
Q 014145 158 FTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQ 237 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 237 (430)
. ....+++|++|.+.++. ++..++. ......++..|++.++..+.
T Consensus 98 ~--~f~~l~~L~~L~l~~n~-l~~~~~~--------------------------------~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 98 E--AFQNLPNLQYLLISNTG-IKHLPDV--------------------------------HKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp T--SBCCCTTCCEEEEEEEC-CSSCCCC--------------------------------TTCCBSSCEEEEEESCTTCC
T ss_pred h--hhhhccccccccccccc-cccCCch--------------------------------hhcccchhhhhhhccccccc
Confidence 2 25667777777777764 3332210 11233456677777766777
Q ss_pred eeccCCchhhhhc-ccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccch
Q 014145 238 HLWKENDESNKAF-ANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQ 316 (430)
Q Consensus 238 ~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 316 (430)
.+....+ ..+ ..++.|+++++ .++.++......++|+++++.++..++.++.. .+..+++|++|+++++ .++.
T Consensus 143 ~l~~~~f---~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N-~l~~ 216 (350)
T 4ay9_X 143 TIERNSF---VGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPND-VFHGASGPVILDISRT-RIHS 216 (350)
T ss_dssp EECTTSS---TTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTT-TTTTEECCSEEECTTS-CCCC
T ss_pred cccccch---hhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHH-HhccCcccchhhcCCC-CcCc
Confidence 7765554 333 46777888774 56667666556667888888877778777654 3467788888888775 4555
Q ss_pred hhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeec
Q 014145 317 IIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVR 367 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~ 367 (430)
++.. .+..|++|.+.++.+++.++. ...+++|+.+++.
T Consensus 217 lp~~----------~~~~L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 217 LPSY----------GLENLKKLRARSTYNLKKLPT---LEKLVALMEASLT 254 (350)
T ss_dssp CCSS----------SCTTCCEEECTTCTTCCCCCC---TTTCCSCCEEECS
T ss_pred cChh----------hhccchHhhhccCCCcCcCCC---chhCcChhhCcCC
Confidence 5422 277788888888888888774 2347788888874
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=5e-16 Score=159.63 Aligned_cols=318 Identities=15% Similarity=0.109 Sum_probs=187.5
Q ss_pred cCCCCcceeecccccCCeee------ccCCC---C--CCCCCCCcceEEEeCCCCCCccCchhHHHhcCC-CCEEEEecC
Q 014145 48 IGFRDIKYLQLGHFPRLQEI------WHGQA---L--PVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNN-LRWLEVRNC 115 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~------~~~~~---~--~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~~ 115 (430)
..|++|++|++++++.+.+. |.+.. + ....+++|++|++++| .+....+..+...+++ |++|++++|
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCC
Confidence 46899999999987654321 11100 0 0015899999999998 3444323333333555 999999999
Q ss_pred CCccEecccccccCCccCcCCcCCccceeecCCcccccc----ccCCccccccCCCccEEEeccCCCcc-----ccc---
Q 014145 116 DSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR----FCNFTENIIEMPELRYLAIENCPDME-----TFI--- 183 (430)
Q Consensus 116 ~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~----~~~~~~~~~~~~~L~~L~l~~c~~l~-----~~~--- 183 (430)
..+... ++ ..+...+++|++|++++|..... ++. ....+++|++|++.++. ++ .++
T Consensus 149 ~~~~~~----~l----~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~---~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 149 SGFTTD----GL----LSIVTHCRKIKTLLMEESSFSEKDGKWLHE---LAQHNTSLEVLNFYMTE-FAKISPKDLETIA 216 (592)
T ss_dssp EEEEHH----HH----HHHHHHCTTCSEEECTTCEEECCCSHHHHH---HHHHCCCCCEEECTTCC-CSSCCHHHHHHHH
T ss_pred CCcCHH----HH----HHHHhhCCCCCEEECccccccCcchhHHHH---HHhcCCCccEEEeeccC-CCccCHHHHHHHH
Confidence 632211 11 11124789999999999853111 111 14578999999998775 43 221
Q ss_pred --CCCceEEEecCCCCCccc-------CCCceeeec-----CcccccccCCCCCCCCEEecccCCCceeeccCCchhhhh
Q 014145 184 --SNSVVHVTTDNKEPEKLT-------SEENFFLTD-----QIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKA 249 (430)
Q Consensus 184 --~~~L~~L~l~~~~~~~~~-------~~~~l~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 249 (430)
.++|+.|++++|.+.++. +++.+.+.. .....+.....+++|+.|.++++. ...+ +..+ ..
T Consensus 217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l-~~~~---~~ 291 (592)
T 3ogk_B 217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEM-PILF---PF 291 (592)
T ss_dssp HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTG-GGGG---GG
T ss_pred hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHH-HHHH---hh
Confidence 679999999998765432 233333311 012333345566777777777641 1111 1122 56
Q ss_pred cccccEEEeecCCCccc-ccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecc----------ccccchhh
Q 014145 250 FANLIRLKISECSKLQK-LVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIAD----------CKMIEQII 318 (430)
Q Consensus 250 l~~L~~L~l~~c~~l~~-l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~----------c~~l~~~~ 318 (430)
+++|++|++++|..... ++..+..+++|++|+++++ +.+.....+...+++|++|++++ |..+.+..
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 78888888888762221 2222457788888888743 33322222346678888888885 66554321
Q ss_pred cccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeecc---CCCCcccCCC------CcCCCCceeee
Q 014145 319 QLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ---CPTMKIFSQG------VVDAPKLNKVK 389 (430)
Q Consensus 319 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~---c~~l~~~~~~------~~~~~~L~~l~ 389 (430)
... -...+++|++|++ .|..++..........+++|++|++.+ |..++..|.. ...+++|++|+
T Consensus 370 ~~~------l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 370 LIA------LAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp HHH------HHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEE
T ss_pred HHH------HHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEE
Confidence 100 0112688888888 455665433211122378899999974 5566654321 34578899999
Q ss_pred ccc
Q 014145 390 PTE 392 (430)
Q Consensus 390 l~~ 392 (430)
+.+
T Consensus 443 L~~ 445 (592)
T 3ogk_B 443 FYL 445 (592)
T ss_dssp EEC
T ss_pred Eec
Confidence 854
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-16 Score=160.87 Aligned_cols=139 Identities=12% Similarity=0.156 Sum_probs=90.8
Q ss_pred cCCCCcceeecccccCCeeecc------CCC-----CCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCC
Q 014145 48 IGFRDIKYLQLGHFPRLQEIWH------GQA-----LPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~~~------~~~-----~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 116 (430)
..|++|+.|++++++.+.+... +.. .-...+++|+.|++++|. +....+..+...+++|++|++++|.
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4689999999999875543211 100 001357899999999985 5543344444579999999999996
Q ss_pred CccEecccccccCCccCcCCcCCccceeecCCcccccccc-CC-ccccccCCCccEEEeccCC-Cccc--cc-----CCC
Q 014145 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC-NF-TENIIEMPELRYLAIENCP-DMET--FI-----SNS 186 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~-~~-~~~~~~~~~L~~L~l~~c~-~l~~--~~-----~~~ 186 (430)
.+.... ...+...+++|++|++++|. +.... .. ......+++|++|++.+|. .+.. +. .++
T Consensus 142 ~~~~~~--------l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~ 212 (594)
T 2p1m_B 142 GFSTDG--------LAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212 (594)
T ss_dssp EEEHHH--------HHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTT
T ss_pred CCCHHH--------HHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCC
Confidence 554310 01223578999999999986 32211 00 0113478899999999986 2221 11 589
Q ss_pred ceEEEecCCC
Q 014145 187 VVHVTTDNKE 196 (430)
Q Consensus 187 L~~L~l~~~~ 196 (430)
|+.|++++|.
T Consensus 213 L~~L~L~~~~ 222 (594)
T 2p1m_B 213 LKSLKLNRAV 222 (594)
T ss_dssp CCEEECCTTS
T ss_pred CcEEecCCCC
Confidence 9999999984
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-14 Score=143.74 Aligned_cols=212 Identities=17% Similarity=0.170 Sum_probs=158.8
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|++|+++++. +..++... ...+++|++|++++|. +...++ +..+++|++|++++| .+..+
T Consensus 32 ~~~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l------- 95 (487)
T 3oja_A 32 SAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQEL------- 95 (487)
T ss_dssp TGGGCCEEECCSSC-CCCCCGGG---GTTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEE-------
T ss_pred cCCCccEEEeeCCc-CCCCCHHH---HhCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCC-------
Confidence 45599999999887 66543222 2578999999999984 555444 568999999999998 56665
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcccC
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTS 202 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~ 202 (430)
...++|++|+++++ .+..++. ..+++|++|++.+|. ++..+ .++|+.|++++|.+.++.+
T Consensus 96 -------~~~~~L~~L~L~~N-~l~~~~~-----~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 96 -------LVGPSIETLHAANN-NISRVSC-----SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp -------EECTTCCEEECCSS-CCCCEEE-----CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred -------CCCCCcCEEECcCC-cCCCCCc-----cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 23389999999986 4444432 357899999999886 55443 4689999999999776431
Q ss_pred CCceeeecCcccccccC-CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEE
Q 014145 203 EENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLE 281 (430)
Q Consensus 203 ~~~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~ 281 (430)
... ..+++|+.|+++++ .++.+... ..+++|+.|+++++ .+..+|..+..+++|+.|+
T Consensus 162 --------------~~l~~~l~~L~~L~Ls~N-~l~~~~~~-----~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~ 220 (487)
T 3oja_A 162 --------------AELAASSDTLEHLNLQYN-FIYDVKGQ-----VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWIS 220 (487)
T ss_dssp --------------GGGGGGTTTCCEEECTTS-CCCEEECC-----CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEE
T ss_pred --------------HHHhhhCCcccEEecCCC-cccccccc-----ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEE
Confidence 122 25789999999996 56666322 45899999999996 5666777778899999999
Q ss_pred EccCCCcccccCchhhccccccceEeecccccc
Q 014145 282 VSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 282 l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++++ .+..+|. .+..+++|+.|++++++..
T Consensus 221 Ls~N-~l~~lp~--~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 221 LRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CTTS-CCCEECT--TCCCCTTCCEEECTTCCBC
T ss_pred ecCC-cCcccch--hhccCCCCCEEEcCCCCCc
Confidence 9996 4666665 3567899999999987654
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-17 Score=161.64 Aligned_cols=149 Identities=13% Similarity=0.098 Sum_probs=79.7
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCC----CcceEEEeCCCCCCccC---chhHHHhcCCCCEEEE
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFN----NLRHLVVDDCTNMLSAI---PANLIRCLNNLRWLEV 112 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~----~L~~L~l~~c~~l~~~~---~~~~~~~l~~L~~L~l 112 (430)
...++..+..+++|++|+++++. +.+..... + ...++ +|++|++++|. +.... ....+..+++|++|++
T Consensus 45 ~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~-l-~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~L 120 (461)
T 1z7x_W 45 CKDISSALRVNPALAELNLRSNE-LGDVGVHC-V-LQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHL 120 (461)
T ss_dssp HHHHHHHHHTCTTCCEEECTTCC-CHHHHHHH-H-HHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred HHHHHHHHHhCCCcCEEeCCCCc-CChHHHHH-H-HHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEEC
Confidence 34555556677888888888765 44311000 0 01122 68888888873 44211 1223567788888888
Q ss_pred ecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc--CCccccccCCCccEEEeccCCCccccc-------
Q 014145 113 RNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC--NFTENIIEMPELRYLAIENCPDMETFI------- 183 (430)
Q Consensus 113 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~~~------- 183 (430)
++|. +.... .......+....++|++|++++|. +.... .....+..+++|++|++.+|. ++...
T Consensus 121 s~n~-i~~~~----~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~ 193 (461)
T 1z7x_W 121 SDNL-LGDAG----LQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQG 193 (461)
T ss_dssp CSSB-CHHHH----HHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHH
T ss_pred CCCc-CchHH----HHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHH
Confidence 8874 43210 000011222334578888887763 32210 000113456788888887765 44321
Q ss_pred ----CCCceEEEecCCCCCc
Q 014145 184 ----SNSVVHVTTDNKEPEK 199 (430)
Q Consensus 184 ----~~~L~~L~l~~~~~~~ 199 (430)
.++|+.|++++|.+..
T Consensus 194 l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 194 LKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHSCCCCCEEECTTSCCBT
T ss_pred HhcCCCCceEEEccCCCCcH
Confidence 2377888888777554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=126.61 Aligned_cols=199 Identities=18% Similarity=0.156 Sum_probs=120.1
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCc
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 131 (430)
+.+.+++++.. ++.++ ....++|+.|+++++ ++..+++. .+.++++|++|++++| .+..+ +
T Consensus 17 ~~~~l~~~~~~-l~~ip------~~~~~~l~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~i---------~ 77 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIP------SNIPADTKKLDLQSN-KLSSLPSK-AFHRLTKLRLLYLNDN-KLQTL---------P 77 (270)
T ss_dssp TTTEEECTTSC-CSSCC------SCCCTTCSEEECCSS-CCSCCCTT-SSSSCTTCCEEECCSS-CCSCC---------C
T ss_pred CCCEEEccCCC-CCccC------CCCCCCCCEEECcCC-CCCeeCHH-HhcCCCCCCEEECCCC-ccCee---------C
Confidence 46677777554 55532 223467888888876 35554332 3567888888888877 35554 4
Q ss_pred cCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecC
Q 014145 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ 211 (430)
Q Consensus 132 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 211 (430)
.+++..+++|++|+++++ .+..++.. ....+++|++|.+.++. ++.+++
T Consensus 78 ~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~--------------------------- 126 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDN-KLQALPIG--VFDQLVNLAELRLDRNQ-LKSLPP--------------------------- 126 (270)
T ss_dssp TTTTSSCTTCCEEECCSS-CCCCCCTT--TTTTCSSCCEEECCSSC-CCCCCT---------------------------
T ss_pred hhhhcCCCCCCEEECCCC-cCCcCCHh--HcccccCCCEEECCCCc-cCeeCH---------------------------
Confidence 555567788888888875 34444322 14556677777776654 332221
Q ss_pred cccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCccc
Q 014145 212 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLIN 290 (430)
Q Consensus 212 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~ 290 (430)
...+.+++|++|+++++ .++.+....+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++ .+..
T Consensus 127 -----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~---~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 195 (270)
T 2o6q_A 127 -----RVFDSLTKLTYLSLGYN-ELQSLPKGVF---DKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKR 195 (270)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred -----HHhCcCcCCCEEECCCC-cCCccCHhHc---cCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCc
Confidence 11245677777777774 5555554444 56677777777775 3444443 3456677777777775 4555
Q ss_pred ccCchhhccccccceEeecccc
Q 014145 291 VLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 291 l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
++.. .+..+++|+.|++++++
T Consensus 196 ~~~~-~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 196 VPEG-AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCTT-TTTTCTTCCEEECCSSC
T ss_pred CCHH-HhccccCCCEEEecCCC
Confidence 5442 24556777777776654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=125.39 Aligned_cols=213 Identities=17% Similarity=0.204 Sum_probs=127.8
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+.++|..+. ++|++|+++++. +..+.... ...+++|++|++++| .+..+.+. .+.++++|++|++++|. +.
T Consensus 19 l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~ 89 (276)
T 2z62_A 19 FYKIPDNLP--FSTKNLDLSFNP-LRHLGSYS---FFSFPELQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGNP-IQ 89 (276)
T ss_dssp CSSCCSSSC--TTCCEEECTTCC-CCEECTTT---TTTCTTCSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTCC-CC
T ss_pred ccccCCCCC--CCccEEECCCCc-ccccCHhH---hccccCCcEEECCCC-cCCccCHH-HccCCcCCCEEECCCCc-cC
Confidence 444554332 468888887776 66543321 145778888888876 45554332 25677888888888773 55
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCc
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEK 199 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~ 199 (430)
.+ +...+..+++|++|++.++ .+..++.. .+..+++|++|++.++. ++...
T Consensus 90 ~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~l~~n~-l~~~~---------------- 140 (276)
T 2z62_A 90 SL---------ALGAFSGLSSLQKLVAVET-NLASLENF--PIGHLKTLKELNVAHNL-IQSFK---------------- 140 (276)
T ss_dssp EE---------CTTTTTTCTTCCEEECTTS-CCCCSTTC--CCTTCTTCCEEECCSSC-CCCCC----------------
T ss_pred cc---------ChhhhcCCccccEEECCCC-CccccCch--hcccCCCCCEEECcCCc-cceec----------------
Confidence 54 3333467778888888775 33333221 14556666666666654 22211
Q ss_pred ccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhccccc----EEEeecCCCcccccCCcccCC
Q 014145 200 LTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLI----RLKISECSKLQKLVTPSWHLE 275 (430)
Q Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~l~~l~ 275 (430)
+. ...+.+++|++|+++++ .++.+....+ ..+++|+ +|+++++ .+..++.......
T Consensus 141 l~---------------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~ 200 (276)
T 2z62_A 141 LP---------------EYFSNLTNLEHLDLSSN-KIQSIYCTDL---RVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEI 200 (276)
T ss_dssp CC---------------GGGGGCTTCCEEECCSS-CCCEECGGGG---HHHHTCTTCCEEEECCSS-CCCEECTTSSCSC
T ss_pred Cc---------------hhhccCCCCCEEECCCC-CCCcCCHHHh---hhhhhccccceeeecCCC-cccccCccccCCC
Confidence 00 12356778888888875 5666655555 4555555 7777775 4555555544555
Q ss_pred CCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 276 NLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 276 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+|++|+++++. ++.++.. .+..+++|++|++++++
T Consensus 201 ~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 201 RLKELALDTNQ-LKSVPDG-IFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CEEEEECCSSC-CSCCCTT-TTTTCCSCCEEECCSSC
T ss_pred cccEEECCCCc-eeecCHh-HhcccccccEEEccCCc
Confidence 78888888764 6665542 34667788888887543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-13 Score=125.03 Aligned_cols=199 Identities=15% Similarity=0.065 Sum_probs=119.1
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
...+++++++++++.. ++.++ ....++++.|+++++. +..+.+. .+..+++|++|++++| .+..+
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip------~~~~~~l~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~----- 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALP------PDLPKDTTILHLSENL-LYTFSLA-TLMPYTRLTQLNLDRA-ELTKL----- 70 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCC------SCCCTTCCEEECTTSC-CSEEEGG-GGTTCTTCCEEECTTS-CCCEE-----
T ss_pred ccccCCccEEECCCCC-CCcCC------CCCCCCCCEEEcCCCc-CCccCHH-HhhcCCCCCEEECCCC-ccCcc-----
Confidence 4567788999888765 66533 2335789999999873 5554333 3778899999999988 46665
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCce
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENF 206 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l 206 (430)
+.. ..+++|++|+++++ .+..+|.. +..+++|++|.+.++. ++.+++.
T Consensus 71 ----~~~--~~l~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~l~~N~-l~~l~~~--------------------- 118 (290)
T 1p9a_G 71 ----QVD--GTLPVLGTLDLSHN-QLQSLPLL---GQTLPALTVLDVSFNR-LTSLPLG--------------------- 118 (290)
T ss_dssp ----ECC--SCCTTCCEEECCSS-CCSSCCCC---TTTCTTCCEEECCSSC-CCCCCSS---------------------
T ss_pred ----cCC--CCCCcCCEEECCCC-cCCcCchh---hccCCCCCEEECCCCc-CcccCHH---------------------
Confidence 221 67788999999885 55566543 5677888888887765 4443321
Q ss_pred eeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc-ccCCCCCEEEEccC
Q 014145 207 FLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKC 285 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~L~~L~l~~c 285 (430)
.+..+++|++|+++++ .++.+....+ ..+++|+.|+++++ .++.+|... ..+++|+.|+++++
T Consensus 119 -----------~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 119 -----------ALRGLGELQELYLKGN-ELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp -----------TTTTCTTCCEEECTTS-CCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -----------HHcCCCCCCEEECCCC-CCCccChhhc---ccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC
Confidence 1234455556665553 4444444333 44555666666554 344444332 34556666666554
Q ss_pred CCcccccCchhhccccccceEeeccc
Q 014145 286 HGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 286 ~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
.+..++.. +...+.|+.|+++++
T Consensus 183 -~l~~ip~~--~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 183 -SLYTIPKG--FFGSHLLPFAFLHGN 205 (290)
T ss_dssp -CCCCCCTT--TTTTCCCSEEECCSC
T ss_pred -cCCccChh--hcccccCCeEEeCCC
Confidence 34444431 233445666665543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-15 Score=139.12 Aligned_cols=234 Identities=14% Similarity=0.183 Sum_probs=123.3
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
++++.|++.++. +...+... ..+++|++|++++|. +........+..+++|++|++++|. +....
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~----~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~-------- 134 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEH----FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPI-------- 134 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSC----CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHH--------
T ss_pred ccceEEEcCCcc-ccccchhh----ccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH--------
Confidence 455555555543 33222222 345566666666653 3221112234556666666666653 22110
Q ss_pred ccCcCCcCCccceeecCCcccccc--ccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceee
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+..+ ..+++|++|++++|..+.. ++.. +..+++|++|++.+|..++... +.
T Consensus 135 ~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~----------------~~------- 187 (336)
T 2ast_B 135 VNTL-AKNSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKH----------------VQ------- 187 (336)
T ss_dssp HHHH-TTCTTCSEEECTTCBSCCHHHHHHH---HHHCTTCCEEECCCCTTCCHHH----------------HH-------
T ss_pred HHHH-hcCCCCCEEECCCCCCCCHHHHHHH---HhcCCCCCEEcCCCCCCcChHH----------------HH-------
Confidence 1222 3455666666665543332 2111 3345555555555553333210 00
Q ss_pred ecCcccccccCCCCC-CCCEEecccCC-Cceee-ccCCchhhhhcccccEEEeecCCCcc-cccCCcccCCCCCEEEEcc
Q 014145 209 TDQIQPLFDEKVAFP-QLRYLELSRLH-KVQHL-WKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~-~L~~L~l~~~~-~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~l~~ 284 (430)
.....++ +|++|++++|. .+++. .... ...+++|+.|++++|..++ ..+..+..+++|++|++++
T Consensus 188 --------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 188 --------VAVAHVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp --------HHHHHSCTTCCEEECCSCGGGSCHHHHHHH---HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred --------HHHHhcccCCCEEEeCCCcccCCHHHHHHH---HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 1134567 88888888874 33211 0111 1668889999999887443 4555677888999999999
Q ss_pred CCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceee-cccceEeccCCCCCceecc
Q 014145 285 CHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVF-EELGYLGLDCLPSLTSFCL 351 (430)
Q Consensus 285 c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L~~~~~ 351 (430)
|..+.+.... .+..+++|++|++++| +.+-. ...+ ..+..|++. +..++.+..
T Consensus 257 ~~~~~~~~~~-~l~~~~~L~~L~l~~~--i~~~~----------~~~l~~~l~~L~l~-~n~l~~~~~ 310 (336)
T 2ast_B 257 CYDIIPETLL-ELGEIPTLKTLQVFGI--VPDGT----------LQLLKEALPHLQIN-CSHFTTIAR 310 (336)
T ss_dssp CTTCCGGGGG-GGGGCTTCCEEECTTS--SCTTC----------HHHHHHHSTTSEES-CCCSCCTTC
T ss_pred CCCCCHHHHH-HHhcCCCCCEEeccCc--cCHHH----------HHHHHhhCcceEEe-cccCccccC
Confidence 8755433221 2567889999999887 22211 0012 346677775 456666543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-13 Score=128.00 Aligned_cols=189 Identities=18% Similarity=0.241 Sum_probs=104.8
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
+++|++|+++++. ++.+. +. ..+++|+.|++++| .+..+.+ +..+++|++|++++|. +..+
T Consensus 40 l~~L~~L~l~~~~-i~~l~-~~----~~l~~L~~L~L~~n-~i~~~~~---~~~l~~L~~L~L~~n~-l~~~-------- 100 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTIE-GV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV-------- 100 (308)
T ss_dssp HHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC--------
T ss_pred cCCcCEEEeeCCC-ccCch-hh----hccCCCCEEEccCC-cCCCChh---HccCCCCCEEEccCCc-CCCc--------
Confidence 4455555555543 43321 11 34555555555555 2333222 3455555555555552 3332
Q ss_pred CccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeee
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
+ . +..+++|++|+++++ .+..++. +..+++|++|++. +|.+..+.
T Consensus 101 -~-~-~~~l~~L~~L~l~~n-~l~~~~~----l~~l~~L~~L~l~-------------------~n~l~~~~-------- 145 (308)
T 1h6u_A 101 -S-A-IAGLQSIKTLDLTST-QITDVTP----LAGLSNLQVLYLD-------------------LNQITNIS-------- 145 (308)
T ss_dssp -G-G-GTTCTTCCEEECTTS-CCCCCGG----GTTCTTCCEEECC-------------------SSCCCCCG--------
T ss_pred -h-h-hcCCCCCCEEECCCC-CCCCchh----hcCCCCCCEEECC-------------------CCccCcCc--------
Confidence 1 1 244555555555554 2333321 3444455555554 44443332
Q ss_pred cCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcc
Q 014145 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLI 289 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~ 289 (430)
..+.+++|+.|+++++ .++.+.. + ..+++|+.|+++++ .+..++. +..+++|++|++++| .+.
T Consensus 146 --------~l~~l~~L~~L~l~~n-~l~~~~~--l---~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-~l~ 208 (308)
T 1h6u_A 146 --------PLAGLTNLQYLSIGNA-QVSDLTP--L---ANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QIS 208 (308)
T ss_dssp --------GGGGCTTCCEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCC
T ss_pred --------cccCCCCccEEEccCC-cCCCChh--h---cCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-ccC
Confidence 1356778888888875 5555433 3 67788888888876 3444443 567788888888886 355
Q ss_pred cccCchhhccccccceEeecccc
Q 014145 290 NVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 290 ~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.++. +..+++|+.|++++++
T Consensus 209 ~~~~---l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 209 DVSP---LANTSNLFIVTLTNQT 228 (308)
T ss_dssp BCGG---GTTCTTCCEEEEEEEE
T ss_pred cccc---ccCCCCCCEEEccCCe
Confidence 5543 5677888888888765
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.6e-13 Score=126.82 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=27.8
Q ss_pred CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccC
Q 014145 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKC 285 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c 285 (430)
.+++|+.|+++++ .++.+....+ ..+++|+.|+++++. +..++ ..+..+++|+.|+++++
T Consensus 155 ~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 155 KLTNLTELDLSYN-QLQSLPEGVF---DKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCccCCEEECCCC-CcCccCHHHh---cCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEEccCC
Confidence 4455555555553 3444333333 445555555555543 22222 22344555555555554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-13 Score=126.70 Aligned_cols=195 Identities=18% Similarity=0.234 Sum_probs=143.0
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|+.|++++| .+..+ +. +..+++|++|++++| .+..+ +. +..+++|++|+++++. +..+
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l-~~--~~~l~~L~~L~L~~n-~i~~~---------~~--~~~l~~L~~L~L~~n~-l~~~ 100 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTI-EG--VQYLNNLIGLELKDN-QITDL---------AP--LKNLTKITELELSGNP-LKNV 100 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCC-TT--GGGCTTCCEEECCSS-CCCCC---------GG--GTTCCSCCEEECCSCC-CSCC
T ss_pred HHcCCcCEEEeeCC-CccCc-hh--hhccCCCCEEEccCC-cCCCC---------hh--HccCCCCCEEEccCCc-CCCc
Confidence 45889999999998 45554 32 667999999999998 45555 33 4788999999999864 5555
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+. +..+++|++|++.+|. ++.+ .....+++|++|+++++ .
T Consensus 101 ~~----~~~l~~L~~L~l~~n~-l~~~----------------------------------~~l~~l~~L~~L~l~~n-~ 140 (308)
T 1h6u_A 101 SA----IAGLQSIKTLDLTSTQ-ITDV----------------------------------TPLAGLSNLQVLYLDLN-Q 140 (308)
T ss_dssp GG----GTTCTTCCEEECTTSC-CCCC----------------------------------GGGTTCTTCCEEECCSS-C
T ss_pred hh----hcCCCCCCEEECCCCC-CCCc----------------------------------hhhcCCCCCCEEECCCC-c
Confidence 32 6677778888777765 3321 12467899999999996 5
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIE 315 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~ 315 (430)
++.+.. + ..+++|+.|+++++ .+..++. +..+++|+.|+++++ .+..++. +..+++|++|++++|. +.
T Consensus 141 l~~~~~--l---~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~-l~ 208 (308)
T 1h6u_A 141 ITNISP--L---AGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISP---LASLPNLIEVHLKNNQ-IS 208 (308)
T ss_dssp CCCCGG--G---GGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECTTSC-CC
T ss_pred cCcCcc--c---cCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChh---hcCCCCCCEEEccCCc-cC
Confidence 666543 3 78899999999997 4555654 778999999999997 4666654 6788999999999875 34
Q ss_pred hhhcccccccCCcceeecccceEeccCCCCCcee
Q 014145 316 QIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSF 349 (430)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~ 349 (430)
.+. ....+++|+.|++.+++ ++..
T Consensus 209 ~~~---------~l~~l~~L~~L~l~~N~-i~~~ 232 (308)
T 1h6u_A 209 DVS---------PLANTSNLFIVTLTNQT-ITNQ 232 (308)
T ss_dssp BCG---------GGTTCTTCCEEEEEEEE-EECC
T ss_pred ccc---------cccCCCCCCEEEccCCe-eecC
Confidence 332 12338899999998864 4443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-16 Score=154.83 Aligned_cols=318 Identities=15% Similarity=0.081 Sum_probs=177.4
Q ss_pred cCCCCcceeecccccCCeeeccCCCCC--CCCCCCcceEEEeCCCCCCccCchhHHHhcC----CCCEEEEecCCCccEe
Q 014145 48 IGFRDIKYLQLGHFPRLQEIWHGQALP--VSFFNNLRHLVVDDCTNMLSAIPANLIRCLN----NLRWLEVRNCDSLEEV 121 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~----~L~~L~l~~~~~l~~~ 121 (430)
..+++|++|+++++. +....... ++ ...+++|++|+++++. +....+..+...++ +|++|++++|. +...
T Consensus 25 ~~~~~L~~L~L~~~~-l~~~~~~~-l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~ 100 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCG-LTEARCKD-ISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGA 100 (461)
T ss_dssp HHHTTCSEEEEESSC-CCHHHHHH-HHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGG
T ss_pred hhcCCccEEEccCCC-CCHHHHHH-HHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHH
Confidence 356788888888776 54211000 00 1346788888888863 44333334455566 68888888874 3321
Q ss_pred cccccccCCccCcCCcCCccceeecCCccccccc-cCC--ccccccCCCccEEEeccCCCccccc----------CCCce
Q 014145 122 LHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF-CNF--TENIIEMPELRYLAIENCPDMETFI----------SNSVV 188 (430)
Q Consensus 122 ~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~-~~~--~~~~~~~~~L~~L~l~~c~~l~~~~----------~~~L~ 188 (430)
+....+.. +..+++|++|+++++. +... +.. .......++|++|++.+|. ++... .++|+
T Consensus 101 ----~~~~l~~~-l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~ 173 (461)
T 1z7x_W 101 ----GCGVLSST-LRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFK 173 (461)
T ss_dssp ----GHHHHHHH-TTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCC
T ss_pred ----HHHHHHHH-HccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCC
Confidence 11111222 3677888888888764 3221 000 0001124578888888875 44321 46888
Q ss_pred EEEecCCCCCcccCCCceeeecCcccccccC-CCCCCCCEEecccCCCceeeccCC-chhhhhcccccEEEeecCCCccc
Q 014145 189 HVTTDNKEPEKLTSEENFFLTDQIQPLFDEK-VAFPQLRYLELSRLHKVQHLWKEN-DESNKAFANLIRLKISECSKLQK 266 (430)
Q Consensus 189 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~ 266 (430)
+|++++|.+..... ..+.... ...++|++|++++| .++...... ......+++|++|+++++..-..
T Consensus 174 ~L~L~~n~i~~~~~----------~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 174 ELTVSNNDINEAGV----------RVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp EEECCSSBCHHHHH----------HHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred EEECcCCCcchHHH----------HHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 88888887543210 0000001 13568999999987 444321000 11115678999999998743221
Q ss_pred ----ccCC-cccCCCCCEEEEccCCCcccccC---chhhccccccceEeeccccccchhhcccccccCCcc-eeecccce
Q 014145 267 ----LVTP-SWHLENLATLEVSKCHGLINVLT---LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC-VVFEELGY 337 (430)
Q Consensus 267 ----l~~~-l~~l~~L~~L~l~~c~~l~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~ 337 (430)
+... ...+++|++|++++| .++.... ...+..+++|++|+++++. +.+..... ..... ...++|++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~---l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARL---LCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHH---HHHHHTSTTCCCCE
T ss_pred HHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHH---HHHHhccCCcccee
Confidence 1111 225789999999998 4555211 1134567899999999874 33221100 00000 01368999
Q ss_pred EeccCCCCCceecc---CCcccCCCCccEEeeccCCCCcccC-----CCCc-CCCCceeeeccccC
Q 014145 338 LGLDCLPSLTSFCL---GNYALEFPSLEHVVVRQCPTMKIFS-----QGVV-DAPKLNKVKPTEEE 394 (430)
Q Consensus 338 L~l~~c~~L~~~~~---~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~~-~~~~L~~l~l~~~~ 394 (430)
|++.+|. ++.... ......+++|++|++++| .++... .... ..++|++|++.++.
T Consensus 318 L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 318 LWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp EECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred eEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 9999985 443321 011224689999999998 443321 1111 26799999997763
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=8.7e-13 Score=122.03 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=124.7
Q ss_pred hhhhhh-cccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 40 IQKCYE-EMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 40 ~~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
+..++. .+..+++|++|+++++. +..+.... ...+++|++|+++++ .+....+. .+.++++|++|++++|. +
T Consensus 40 l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~-l 112 (276)
T 2z62_A 40 LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGA---YQSLSHLSTLILTGN-PIQSLALG-AFSGLSSLQKLVAVETN-L 112 (276)
T ss_dssp CCEECTTTTTTCTTCSEEECTTCC-CCEECTTT---TTTCTTCCEEECTTC-CCCEECTT-TTTTCTTCCEEECTTSC-C
T ss_pred ccccCHhHhccccCCcEEECCCCc-CCccCHHH---ccCCcCCCEEECCCC-ccCccChh-hhcCCccccEEECCCCC-c
Confidence 444443 45678999999999886 77654322 256899999999997 45554443 37789999999999984 5
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCcccccc--ccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKR--FCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKE 196 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~ 196 (430)
..+ +...+..+++|++|+++++. +.. ++.. +..+++|++|++.+|. ++..++..+
T Consensus 113 ~~~---------~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~---~~~l~~L~~L~Ls~N~-l~~~~~~~~--------- 169 (276)
T 2z62_A 113 ASL---------ENFPIGHLKTLKELNVAHNL-IQSFKLPEY---FSNLTNLEHLDLSSNK-IQSIYCTDL--------- 169 (276)
T ss_dssp CCS---------TTCCCTTCTTCCEEECCSSC-CCCCCCCGG---GGGCTTCCEEECCSSC-CCEECGGGG---------
T ss_pred ccc---------CchhcccCCCCCEEECcCCc-cceecCchh---hccCCCCCEEECCCCC-CCcCCHHHh---------
Confidence 444 23234788999999999864 443 3332 6778899999988875 444332111
Q ss_pred CCcccCCCceeeecCcccccccCCCCCCCC-EEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccC
Q 014145 197 PEKLTSEENFFLTDQIQPLFDEKVAFPQLR-YLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHL 274 (430)
Q Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l 274 (430)
.....++.|. +|+++++ .++.+....+ ...+|+.|+++++. ++.++.. +..+
T Consensus 170 --------------------~~l~~L~~l~l~L~ls~n-~l~~~~~~~~----~~~~L~~L~L~~n~-l~~~~~~~~~~l 223 (276)
T 2z62_A 170 --------------------RVLHQMPLLNLSLDLSLN-PMNFIQPGAF----KEIRLKELALDTNQ-LKSVPDGIFDRL 223 (276)
T ss_dssp --------------------HHHHTCTTCCEEEECCSS-CCCEECTTSS----CSCCEEEEECCSSC-CSCCCTTTTTTC
T ss_pred --------------------hhhhhccccceeeecCCC-cccccCcccc----CCCcccEEECCCCc-eeecCHhHhccc
Confidence 1111222333 6777764 5666554443 22378888888764 5555544 3567
Q ss_pred CCCCEEEEccCC
Q 014145 275 ENLATLEVSKCH 286 (430)
Q Consensus 275 ~~L~~L~l~~c~ 286 (430)
++|+.|++++++
T Consensus 224 ~~L~~L~l~~N~ 235 (276)
T 2z62_A 224 TSLQKIWLHTNP 235 (276)
T ss_dssp CSCCEEECCSSC
T ss_pred ccccEEEccCCc
Confidence 888888888653
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-13 Score=122.19 Aligned_cols=189 Identities=20% Similarity=0.206 Sum_probs=132.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|..+. ++|++|+++++. +..+.... ...+++|++|+++++ .+..+ +...+..+++|++|++++|. +
T Consensus 27 ~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~---~~~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n~-l 97 (270)
T 2o6q_A 27 KLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKA---FHRLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDNK-L 97 (270)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSC-CSCCCTTS---SSSCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSSC-C
T ss_pred CCCccCCCCC--CCCCEEECcCCC-CCeeCHHH---hcCCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCCc-C
Confidence 3445555432 589999999887 66543322 257899999999997 45554 44446789999999999984 6
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPE 198 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~ 198 (430)
..+ +...+..+++|++|+++++ .+..++.. .+..+++|++|++.++. ++.+++
T Consensus 98 ~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~~-------------- 150 (270)
T 2o6q_A 98 QAL---------PIGVFDQLVNLAELRLDRN-QLKSLPPR--VFDSLTKLTYLSLGYNE-LQSLPK-------------- 150 (270)
T ss_dssp CCC---------CTTTTTTCSSCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSSC-CCCCCT--------------
T ss_pred CcC---------CHhHcccccCCCEEECCCC-ccCeeCHH--HhCcCcCCCEEECCCCc-CCccCH--------------
Confidence 555 5555688999999999986 45555332 14678888888888774 443322
Q ss_pred cccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCC
Q 014145 199 KLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENL 277 (430)
Q Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L 277 (430)
.....+++|++|+++++ .++.+....+ ..+++|+.|+++++ .+..++.. +..+++|
T Consensus 151 ------------------~~~~~l~~L~~L~L~~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 151 ------------------GVFDKLTSLKELRLYNN-QLKRVPEGAF---DKLTELKTLKLDNN-QLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ------------------TTTTTCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred ------------------hHccCCcccceeEecCC-cCcEeChhHh---ccCCCcCEEECCCC-cCCcCCHHHhccccCC
Confidence 11356778888888875 5666655555 67788889988886 45555543 5578889
Q ss_pred CEEEEccCC
Q 014145 278 ATLEVSKCH 286 (430)
Q Consensus 278 ~~L~l~~c~ 286 (430)
+.|++++++
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 999988764
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-14 Score=135.10 Aligned_cols=245 Identities=14% Similarity=0.067 Sum_probs=137.8
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhc--CCCCEEEEecCCCccEecccccccC
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCL--NNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
.|..-++..+..+..-|... . ..-..++.++++++. +. + ..+..+ ++++.|+++++. +...
T Consensus 23 ~L~~~d~~~~~~vc~~W~~~-~--~~~~~~~~l~l~~~~-~~---~-~~~~~~~~~~l~~L~l~~n~-l~~~-------- 85 (336)
T 2ast_B 23 CLCLPELLKVSGVCKRWYRL-A--SDESLWQTLDLTGKN-LH---P-DVTGRLLSQGVIAFRCPRSF-MDQP-------- 85 (336)
T ss_dssp TSCHHHHHHTTSSCHHHHHH-H--TCSTTSSEEECTTCB-CC---H-HHHHHHHHTTCSEEECTTCE-ECSC--------
T ss_pred hCCHHHHHHHHHHHHHHHHH-h--cCchhheeecccccc-CC---H-HHHHhhhhccceEEEcCCcc-cccc--------
Confidence 44444444455455456554 1 112347888888753 22 2 335566 889999988874 3333
Q ss_pred CccCcCCcCCccceeecCCcccccc-ccCCccccccCCCccEEEeccCCCccccc------CCCceEEEecCC-CCCccc
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKR-FCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNK-EPEKLT 201 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~-~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~-~~~~~~ 201 (430)
+..+ ..+++|++|+++++..... ++.. +..+++|++|++.+|. ++... .++|++|++++| .+....
T Consensus 86 -~~~~-~~~~~L~~L~L~~~~l~~~~~~~~---~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~ 159 (336)
T 2ast_B 86 -LAEH-FSPFRVQHMDLSNSVIEVSTLHGI---LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFA 159 (336)
T ss_dssp -CCSC-CCCBCCCEEECTTCEECHHHHHHH---HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHH
T ss_pred -chhh-ccCCCCCEEEccCCCcCHHHHHHH---HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHH
Confidence 2233 5678999999988753222 3322 5678889999988885 44211 456677777766 333210
Q ss_pred CCCceeeecCcccccccCCCCCCCCEEecccCCCceeec-cCCchhhhhcc-cccEEEeecCC-Cc--ccccCCcccCCC
Q 014145 202 SEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW-KENDESNKAFA-NLIRLKISECS-KL--QKLVTPSWHLEN 276 (430)
Q Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~-~L~~L~l~~c~-~l--~~l~~~l~~l~~ 276 (430)
+......+++|++|++++|..++... ...+ ..++ +|++|++++|. .+ ..++..+..+++
T Consensus 160 -------------l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 160 -------------LQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223 (336)
T ss_dssp -------------HHHHHHHCTTCCEEECCCCTTCCHHHHHHHH---HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred -------------HHHHHhcCCCCCEEcCCCCCCcChHHHHHHH---HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence 00113456777777777764554321 1111 5566 77777777764 22 234444456777
Q ss_pred CCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCC
Q 014145 277 LATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 277 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
|++|++++|..+++.... .+..+++|++|++++|..+..... .....+++|++|++.+|
T Consensus 224 L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETL-------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGG-------GGGGGCTTCCEEECTTS
T ss_pred CCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHH-------HHHhcCCCCCEEeccCc
Confidence 777777777655432222 245667777777777753322110 01122677777777776
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-14 Score=133.06 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=60.8
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccCCCcccccCchhhc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 298 (430)
+.+++|++|+++++ .++.+..........+++|+.|+++++......| .....+++|++|+++++. ++.++.. +.
T Consensus 198 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~--~~ 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG--LP 273 (312)
T ss_dssp TSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS--CC
T ss_pred ccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhh--cc
Confidence 56677788888775 4443211111111345778888887764333232 233456778888887763 5555532 12
Q ss_pred cccccceEeeccccccchhhcccccccCCcceeecccceEeccCC
Q 014145 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCL 343 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 343 (430)
++|++|+++++. +..++ ....+++|++|++.+.
T Consensus 274 --~~L~~L~Ls~N~-l~~~p---------~~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 274 --AKLSVLDLSYNR-LDRNP---------SPDELPQVGNLSLKGN 306 (312)
T ss_dssp --SEEEEEECCSSC-CCSCC---------CTTTSCEEEEEECTTC
T ss_pred --CCceEEECCCCC-CCCCh---------hHhhCCCCCEEeccCC
Confidence 677888887753 33332 1223677777877764
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=121.89 Aligned_cols=198 Identities=17% Similarity=0.173 Sum_probs=108.5
Q ss_pred CCCcceEEEeCCCCCCccCchhH-HHhcCCCCEEEEecCCCccEecccccccCCccCcCCcC-----CccceeecCCccc
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANL-IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLF-----PKLFELTLMDLPK 151 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l-----~~L~~L~l~~~~~ 151 (430)
+++|++|++++|. +....|..+ +..+++|++|++++|. +..+ |..+ ..+ ++|++|+++++.
T Consensus 94 l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~---------~~~~-~~l~~~~~~~L~~L~L~~N~- 160 (312)
T 1wwl_A 94 ISGLQELTLENLE-VTGTAPPPLLEATGPDLNILNLRNVS-WATR---------DAWL-AELQQWLKPGLKVLSIAQAH- 160 (312)
T ss_dssp TSCCCEEEEEEEB-CBSCCCCCSSSCCSCCCSEEEEESCB-CSSS---------SSHH-HHHHTTCCTTCCEEEEESCS-
T ss_pred cCCccEEEccCCc-ccchhHHHHHHhcCCCccEEEccCCC-Ccch---------hHHH-HHHHHhhcCCCcEEEeeCCC-
Confidence 5566666666653 332233321 1456666666666652 3322 1111 222 566666666542
Q ss_pred cccccCCccccccCCCccEEEeccCCCccc---------ccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCC
Q 014145 152 LKRFCNFTENIIEMPELRYLAIENCPDMET---------FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAF 222 (430)
Q Consensus 152 l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---------~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 222 (430)
+..++.. .+..+++|++|++.++..... -..++|++|++++|.+..+..+ .......+
T Consensus 161 l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~~~~~~l 227 (312)
T 1wwl_A 161 SLNFSCE--QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV-----------CSALAAAR 227 (312)
T ss_dssp CCCCCTT--TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH-----------HHHHHHTT
T ss_pred CccchHH--HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH-----------HHHHHhcC
Confidence 3333211 144566666666666552211 1134666666666665532100 00011356
Q ss_pred CCCCEEecccCCCceeecc-CCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
++|++|+++++ .++...+ ..+ ..+++|+.|+++++ .++.+|..+. ++|++|+++++ .++.++. +..++
T Consensus 228 ~~L~~L~Ls~N-~l~~~~~~~~~---~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~---~~~l~ 296 (312)
T 1wwl_A 228 VQLQGLDLSHN-SLRDAAGAPSC---DWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS---PDELP 296 (312)
T ss_dssp CCCSEEECTTS-CCCSSCCCSCC---CCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC---TTTSC
T ss_pred CCCCEEECCCC-cCCcccchhhh---hhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh---HhhCC
Confidence 78888888875 4554331 222 45678888888886 4557776554 78888888886 4666643 56778
Q ss_pred ccceEeecccc
Q 014145 302 NLGRMKIADCK 312 (430)
Q Consensus 302 ~L~~L~l~~c~ 312 (430)
+|++|++++++
T Consensus 297 ~L~~L~L~~N~ 307 (312)
T 1wwl_A 297 QVGNLSLKGNP 307 (312)
T ss_dssp EEEEEECTTCT
T ss_pred CCCEEeccCCC
Confidence 88888888754
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-12 Score=117.75 Aligned_cols=200 Identities=18% Similarity=0.137 Sum_probs=140.8
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++++.++++++ ++..+++ .+ .+++++|++++|. +..+ +...+..+++|++|+++++ .+..+
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip~-~~---~~~l~~L~L~~N~-l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~ 70 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALPP-DL---PKDTTILHLSENL-LYTF---------SLATLMPYTRLTQLNLDRA-ELTKL 70 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCCS-CC---CTTCCEEECTTSC-CSEE---------EGGGGTTCTTCCEEECTTS-CCCEE
T ss_pred cccCCccEEECCCC-CCCcCCC-CC---CCCCCEEEcCCCc-CCcc---------CHHHhhcCCCCCEEECCCC-ccCcc
Confidence 46788899988876 5666443 22 3679999999884 5555 2333477889999999885 45555
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+. ...+++|++|++.++. ++ .+. .....+++|+.|+++++ .
T Consensus 71 ~~----~~~l~~L~~L~Ls~N~-l~------------------~l~---------------~~~~~l~~L~~L~l~~N-~ 111 (290)
T 1p9a_G 71 QV----DGTLPVLGTLDLSHNQ-LQ------------------SLP---------------LLGQTLPALTVLDVSFN-R 111 (290)
T ss_dssp EC----CSCCTTCCEEECCSSC-CS------------------SCC---------------CCTTTCTTCCEEECCSS-C
T ss_pred cC----CCCCCcCCEEECCCCc-CC------------------cCc---------------hhhccCCCCCEEECCCC-c
Confidence 43 2456667777666654 32 222 12467889999999985 7
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhccccccceEeecccccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMI 314 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l 314 (430)
++.+....+ ..+++|+.|+++++ .+..++.. +..+++|+.|+++++ .+..++.. .+..+++|++|+++++. +
T Consensus 112 l~~l~~~~~---~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~L~~N~-l 184 (290)
T 1p9a_G 112 LTSLPLGAL---RGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPAG-LLNGLENLDTLLLQENS-L 184 (290)
T ss_dssp CCCCCSSTT---TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTT-TTTTCTTCCEEECCSSC-C
T ss_pred CcccCHHHH---cCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCHH-HhcCcCCCCEEECCCCc-C
Confidence 787776666 88999999999997 45666554 468899999999986 57777653 35678999999998864 4
Q ss_pred chhhcccccccCCcceeecccceEeccCCCC
Q 014145 315 EQIIQLQVGEEAKGCVVFEELGYLGLDCLPS 345 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 345 (430)
..++. .....++|+.|.+.+.|-
T Consensus 185 ~~ip~--------~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 185 YTIPK--------GFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCT--------TTTTTCCCSEEECCSCCB
T ss_pred CccCh--------hhcccccCCeEEeCCCCc
Confidence 44431 222356899999987653
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.41 E-value=6.4e-14 Score=136.26 Aligned_cols=268 Identities=12% Similarity=0.072 Sum_probs=141.3
Q ss_pred ccceeecccccchhhhhhhcccCCCCcceeecccccCCeeeccCC-CCCCCCCCCcceEEEeCCC--CCCccCchhH---
Q 014145 27 GELRRWEGNLNSTIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQ-ALPVSFFNNLRHLVVDDCT--NMLSAIPANL--- 100 (430)
Q Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~--~l~~~~~~~~--- 100 (430)
...++|.+-.+..+..++..+..+++|++|+++++. +....... ......+++|++|++++|. .+....|.++
T Consensus 8 ~~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l 86 (386)
T 2ca6_A 8 GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL 86 (386)
T ss_dssp TCCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH
T ss_pred CcccccCCCCHHHHHHHHHHHhcCCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH
Confidence 344555554556677787778888999999999886 54321100 0012468999999999973 2332334332
Q ss_pred ---HHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc-CC-ccccccC---------C
Q 014145 101 ---IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC-NF-TENIIEM---------P 166 (430)
Q Consensus 101 ---~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~-~~-~~~~~~~---------~ 166 (430)
+..+++|++|++++|. +... +....+..+ ..+++|++|++++|.. .... .. ...+..+ +
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~-l~~~----~~~~l~~~l-~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~l~~~~~~~~~~ 159 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNA-FGPT----AQEPLIDFL-SKHTPLEHLYLHNNGL-GPQAGAKIARALQELAVNKKAKNAP 159 (386)
T ss_dssp HHHHTTCTTCCEEECCSCC-CCTT----THHHHHHHH-HHCTTCCEEECCSSCC-HHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhhCCcccEEECCCCc-CCHH----HHHHHHHHH-HhCCCCCEEECcCCCC-CHHHHHHHHHHHHHHhhhhhcccCC
Confidence 3678999999999984 3220 111112333 6678888888888643 2110 00 0001222 6
Q ss_pred CccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee-----ecc
Q 014145 167 ELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH-----LWK 241 (430)
Q Consensus 167 ~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~ 241 (430)
+|++|.+.+|. ++... +. .+......+++|++|+++++ .++. +.+
T Consensus 160 ~L~~L~L~~n~-l~~~~----------------~~------------~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~ 209 (386)
T 2ca6_A 160 PLRSIICGRNR-LENGS----------------MK------------EWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLL 209 (386)
T ss_dssp CCCEEECCSSC-CTGGG----------------HH------------HHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHH
T ss_pred CCcEEECCCCC-CCcHH----------------HH------------HHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHH
Confidence 66666666654 32110 00 00011234556666666664 3331 111
Q ss_pred CCchhhhhcccccEEEeecCCCc----ccccCCcccCCCCCEEEEccCCCcccccCch---hh--ccccccceEeecccc
Q 014145 242 ENDESNKAFANLIRLKISECSKL----QKLVTPSWHLENLATLEVSKCHGLINVLTLS---TS--ESLVNLGRMKIADCK 312 (430)
Q Consensus 242 ~~~~~~~~l~~L~~L~l~~c~~l----~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~---~~--~~l~~L~~L~l~~c~ 312 (430)
..+ ..+++|+.|+++++..- ..++..+..+++|++|++++|. +....... .+ +.+++|++|++++|.
T Consensus 210 ~~l---~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 210 EGL---AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp TTG---GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred HHh---hcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 122 45666777777665432 3445555566677777777664 33321100 11 225667777777664
Q ss_pred ccc----hhhcccccccCCcc-eeecccceEeccCCC
Q 014145 313 MIE----QIIQLQVGEEAKGC-VVFEELGYLGLDCLP 344 (430)
Q Consensus 313 ~l~----~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~ 344 (430)
.-. .++. .. ..+++|++|++.+++
T Consensus 286 i~~~g~~~l~~--------~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 286 IELDAVRTLKT--------VIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CBHHHHHHHHH--------HHHHHCTTCCEEECTTSB
T ss_pred CCHHHHHHHHH--------HHHhcCCCceEEEccCCc
Confidence 322 1221 11 125677777777653
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=113.92 Aligned_cols=178 Identities=21% Similarity=0.235 Sum_probs=97.5
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|+.|+++++. +... +. +..+++|++|++++|. +..+ .. +..+++|++|+++++ .+..+
T Consensus 38 ~~l~~L~~L~l~~~~-i~~~-~~--l~~l~~L~~L~l~~n~-l~~~----------~~-l~~l~~L~~L~L~~n-~l~~~ 100 (272)
T 3rfs_A 38 NELNSIDQIIANNSD-IKSV-QG--IQYLPNVRYLALGGNK-LHDI----------SA-LKELTNLTYLILTGN-QLQSL 100 (272)
T ss_dssp HHHTTCCEEECTTSC-CCCC-TT--GGGCTTCCEEECTTSC-CCCC----------GG-GTTCTTCCEEECTTS-CCCCC
T ss_pred ccccceeeeeeCCCC-cccc-cc--cccCCCCcEEECCCCC-CCCc----------hh-hcCCCCCCEEECCCC-ccCcc
Confidence 356777777777753 3332 21 4567777777777763 3332 12 255667777777665 33333
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+.. .+..+++|++|++.+|. ++..++ ...+.+++|++|+++++ .
T Consensus 101 ~~~--~~~~l~~L~~L~L~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~L~~n-~ 144 (272)
T 3rfs_A 101 PNG--VFDKLTNLKELVLVENQ-LQSLPD--------------------------------GVFDKLTNLTYLNLAHN-Q 144 (272)
T ss_dssp CTT--TTTTCTTCCEEECTTSC-CCCCCT--------------------------------TTTTTCTTCCEEECCSS-C
T ss_pred Chh--HhcCCcCCCEEECCCCc-CCccCH--------------------------------HHhccCCCCCEEECCCC-c
Confidence 221 13455566666665553 222211 11245667777777775 5
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
++.+....+ ..+++|+.|+++++. +..++.. +..+++|+.|++++|. +..++.. .+..+++|++|++++++
T Consensus 145 l~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 145 LQSLPKGVF---DKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDG-VFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCCCCTTTT---TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred cCccCHHHh---ccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCHH-HHhCCcCCCEEEccCCC
Confidence 555544444 566777777777763 3444332 3566677777777653 4444332 23456666666666543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=8.2e-12 Score=117.58 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=53.3
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 299 (430)
+.+++|++|+++++ .++...+..+.....+++|++|+++++ .++.+|..+. ++|+.|+++++ .+..++. ...
T Consensus 221 ~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~---~~~ 292 (310)
T 4glp_A 221 AAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ---PDE 292 (310)
T ss_dssp HHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCC---TTS
T ss_pred hcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCch---hhh
Confidence 34577777887774 455543332311122368888888775 4556665543 68888888876 4555543 466
Q ss_pred ccccceEeecccc
Q 014145 300 LVNLGRMKIADCK 312 (430)
Q Consensus 300 l~~L~~L~l~~c~ 312 (430)
+++|+.|++++++
T Consensus 293 l~~L~~L~L~~N~ 305 (310)
T 4glp_A 293 LPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCSCEECSSTT
T ss_pred CCCccEEECcCCC
Confidence 7888888887754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-11 Score=111.76 Aligned_cols=174 Identities=17% Similarity=0.140 Sum_probs=85.7
Q ss_pred CcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCc
Q 014145 52 DIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADK 131 (430)
Q Consensus 52 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 131 (430)
+.+++++++.. ++.++. ...++++.|+++++ .+..+.+. .+.++++|++|++++| .+..+ +
T Consensus 15 ~~~~l~~~~~~-l~~~p~------~~~~~l~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~---------~ 75 (251)
T 3m19_A 15 GKKEVDCQGKS-LDSVPS------GIPADTEKLDLQST-GLATLSDA-TFRGLTKLTWLNLDYN-QLQTL---------S 75 (251)
T ss_dssp GGTEEECTTCC-CSSCCS------CCCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCCCC---------C
T ss_pred CCeEEecCCCC-ccccCC------CCCCCCCEEEccCC-CcCccCHh-HhcCcccCCEEECCCC-cCCcc---------C
Confidence 34556655444 444222 22356677777665 34443332 2556677777777766 34443 2
Q ss_pred cCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecC
Q 014145 132 EHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQ 211 (430)
Q Consensus 132 ~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 211 (430)
...+..+++|++|+++++ .+..++.. .+..+++|++|++.++. ++.+++
T Consensus 76 ~~~~~~l~~L~~L~L~~n-~l~~~~~~--~~~~l~~L~~L~L~~N~-l~~~~~--------------------------- 124 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANN-QLASLPLG--VFDHLTQLDKLYLGGNQ-LKSLPS--------------------------- 124 (251)
T ss_dssp TTTTTTCTTCCEEECTTS-CCCCCCTT--TTTTCTTCCEEECCSSC-CCCCCT---------------------------
T ss_pred HhHhccCCcCCEEECCCC-cccccChh--HhcccCCCCEEEcCCCc-CCCcCh---------------------------
Confidence 333456666666666664 33333221 13345555555555542 222211
Q ss_pred cccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccC
Q 014145 212 IQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKC 285 (430)
Q Consensus 212 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c 285 (430)
.....+++|+.|+++++ .++.+....+ ..+++|+.|+++++. +..++. .+..+++|+.|+++++
T Consensus 125 -----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 125 -----GVFDRLTKLKELRLNTN-QLQSIPAGAF---DKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp -----TTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred -----hHhccCCcccEEECcCC-cCCccCHHHc---CcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence 01234556666666653 4554444333 455566666666542 333332 3445555666666554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.8e-11 Score=112.90 Aligned_cols=169 Identities=20% Similarity=0.270 Sum_probs=115.6
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|+.|++++| .+..+.. +..+++|++|++++| .+..+ +. +..+++|+.|+++++ .+..+
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~---~~~l~~L~~L~L~~n-~l~~~---------~~--l~~l~~L~~L~l~~n-~l~~~ 105 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI---------KP--LANLKNLGWLFLDEN-KVKDL 105 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCC---------GG--GTTCTTCCEEECCSS-CCCCG
T ss_pred hhcCcccEEEccCC-CcccChh---HhcCCCCCEEEccCC-ccCCC---------cc--cccCCCCCEEECCCC-cCCCC
Confidence 46889999999998 4555432 567999999999998 45554 22 378899999999986 45555
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCC
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHK 235 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 235 (430)
+. +..+++|++|++.+|. ++.+ .....+++|+.|+++++ .
T Consensus 106 ~~----l~~l~~L~~L~L~~n~-i~~~----------------------------------~~l~~l~~L~~L~l~~n-~ 145 (291)
T 1h6t_A 106 SS----LKDLKKLKSLSLEHNG-ISDI----------------------------------NGLVHLPQLESLYLGNN-K 145 (291)
T ss_dssp GG----GTTCTTCCEEECTTSC-CCCC----------------------------------GGGGGCTTCCEEECCSS-C
T ss_pred hh----hccCCCCCEEECCCCc-CCCC----------------------------------hhhcCCCCCCEEEccCC-c
Confidence 43 6677888888887765 3322 12345677788888775 4
Q ss_pred ceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 236 VQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 236 l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
++.+ ..+ ..+++|+.|+++++ .+..++. +..+++|+.|++++| .+.+++. +..+++|+.|++++++
T Consensus 146 l~~~--~~l---~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~---l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 146 ITDI--TVL---SRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCCC--GGG---GGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEEEEE
T ss_pred CCcc--hhh---ccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCChh---hccCCCCCEEECcCCc
Confidence 5544 222 67778888888776 3444443 667778888888776 4555543 5667788888887764
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=106.06 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=28.7
Q ss_pred hhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 248 KAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
..+++|+.|++++|..+..++ .+..+++|+.|++++|. +.+++ .+..+++|++|+++++
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC
T ss_pred hhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCc
Confidence 344555555555543344443 34455555555555542 33333 1345555666666543
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.3e-11 Score=111.60 Aligned_cols=168 Identities=18% Similarity=0.279 Sum_probs=117.6
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|+.|+++++. +..+. +. ..+++|+.|++++| .+..+.+ +..+++|++|++++|. +..+
T Consensus 44 ~l~~L~~L~l~~~~-i~~~~-~~----~~l~~L~~L~L~~n-~l~~~~~---l~~l~~L~~L~l~~n~-l~~~------- 105 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDENK-VKDL------- 105 (291)
T ss_dssp HHHTCCEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCG-------
T ss_pred hcCcccEEEccCCC-cccCh-hH----hcCCCCCEEEccCC-ccCCCcc---cccCCCCCEEECCCCc-CCCC-------
Confidence 46789999999886 66542 22 57899999999998 4666444 6789999999999984 5554
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceee
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
.. +..+++|++|+++++ .+..++. +..+++|++|++.+|. ++.+
T Consensus 106 ---~~-l~~l~~L~~L~L~~n-~i~~~~~----l~~l~~L~~L~l~~n~-l~~~-------------------------- 149 (291)
T 1h6t_A 106 ---SS-LKDLKKLKSLSLEHN-GISDING----LVHLPQLESLYLGNNK-ITDI-------------------------- 149 (291)
T ss_dssp ---GG-GTTCTTCCEEECTTS-CCCCCGG----GGGCTTCCEEECCSSC-CCCC--------------------------
T ss_pred ---hh-hccCCCCCEEECCCC-cCCCChh----hcCCCCCCEEEccCCc-CCcc--------------------------
Confidence 22 378899999999997 4555532 6778888888888775 3322
Q ss_pred ecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCC
Q 014145 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~ 286 (430)
.....+++|+.|+++++ .++.+.. + ..+++|+.|+++++ .++.++ .+..+++|+.|++++++
T Consensus 150 --------~~l~~l~~L~~L~L~~N-~l~~~~~--l---~~l~~L~~L~L~~N-~i~~l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 150 --------TVLSRLTKLDTLSLEDN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --------GGGGGCTTCSEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred --------hhhccCCCCCEEEccCC-ccccchh--h---cCCCccCEEECCCC-cCCCCh-hhccCCCCCEEECcCCc
Confidence 12345667777777764 4555432 2 66777777777775 445554 35677777888777753
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-12 Score=119.38 Aligned_cols=229 Identities=15% Similarity=0.063 Sum_probs=137.4
Q ss_pred CCcceEEEeCCCCCCccCchh--HHHhcCCCCEEEEecCCCccEecccccccCCccCcC-CcCCccceeecCCccccccc
Q 014145 79 NNLRHLVVDDCTNMLSAIPAN--LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIG-PLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~-~~l~~L~~L~l~~~~~l~~~ 155 (430)
..++.+.+.++. +....... -.-.+++|++|++++|...... |..++ ..+++|++|+++++......
T Consensus 64 ~~l~~l~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---------~~~~~~~~~~~L~~L~Ls~n~i~~~~ 133 (310)
T 4glp_A 64 LRVRRLTVGAAQ-VPAQLLVGALRVLAYSRLKELTLEDLKITGTM---------PPLPLEATGLALSSLRLRNVSWATGR 133 (310)
T ss_dssp CCCCEEEECSCC-CBHHHHHHHHHHHHHSCCCEEEEESCCCBSCC---------CCCSSSCCCBCCSSCEEESCCCSSTT
T ss_pred cceeEEEEeCCc-CCHHHHHHHHHhcccCceeEEEeeCCEeccch---------hhhhhhccCCCCCEEEeecccccchh
Confidence 346777777653 22111011 1223566888888887432222 23322 66778888888876433222
Q ss_pred cCCc-cccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEE
Q 014145 156 CNFT-ENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYL 228 (430)
Q Consensus 156 ~~~~-~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 228 (430)
+... .....+++|++|++.+|. ++..+ .++|+.|++++|.+.+...+ ......+.+++|++|
T Consensus 134 ~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~~~~~~~l~~L~~L 202 (310)
T 4glp_A 134 SWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGL----------MAALCPHKFPAIQNL 202 (310)
T ss_dssp SSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHH----------HTTSCTTSSCCCCSC
T ss_pred hhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhh----------hHHHhhhcCCCCCEE
Confidence 1100 013357788888888776 44333 45788888888875431100 000113578899999
Q ss_pred ecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccC---CCCCEEEEccCCCcccccCchhhccccccce
Q 014145 229 ELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHL---ENLATLEVSKCHGLINVLTLSTSESLVNLGR 305 (430)
Q Consensus 229 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l---~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~ 305 (430)
+++++ +++.+..........+++|++|+++++......|..+..+ ++|++|+++++ .++.+|.. + +++|++
T Consensus 203 ~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~--~--~~~L~~ 276 (310)
T 4glp_A 203 ALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKG--L--PAKLRV 276 (310)
T ss_dssp BCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSC--C--CSCCSC
T ss_pred ECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhh--h--cCCCCE
Confidence 99996 5654432211112567999999999975444446655555 79999999986 46676642 2 379999
Q ss_pred EeeccccccchhhcccccccCCcceeecccceEeccCCC
Q 014145 306 MKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 306 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
|+++++. +..+.. ...+++|++|++.+.+
T Consensus 277 L~Ls~N~-l~~~~~---------~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 277 LDLSSNR-LNRAPQ---------PDELPEVDNLTLDGNP 305 (310)
T ss_dssp EECCSCC-CCSCCC---------TTSCCCCSCEECSSTT
T ss_pred EECCCCc-CCCCch---------hhhCCCccEEECcCCC
Confidence 9999874 444321 1237999999998864
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-10 Score=104.67 Aligned_cols=177 Identities=18% Similarity=0.128 Sum_probs=118.1
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
.+.+.+++++. ++..++. .+ .++|++|++++|. +..+ +...+..+++|++|+++++ .+..++..
T Consensus 14 ~~~~~l~~~~~-~l~~~p~-~~---~~~l~~L~L~~n~-l~~~---------~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 77 (251)
T 3m19_A 14 EGKKEVDCQGK-SLDSVPS-GI---PADTEKLDLQSTG-LATL---------SDATFRGLTKLTWLNLDYN-QLQTLSAG 77 (251)
T ss_dssp GGGTEEECTTC-CCSSCCS-CC---CTTCCEEECTTSC-CCCC---------CTTTTTTCTTCCEEECTTS-CCCCCCTT
T ss_pred CCCeEEecCCC-CccccCC-CC---CCCCCEEEccCCC-cCcc---------CHhHhcCcccCCEEECCCC-cCCccCHh
Confidence 45667777765 4555433 21 3578888888874 4444 3333477888888888875 44444321
Q ss_pred ccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee
Q 014145 159 TENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (430)
.+..+++|++|++.++. ++.+++ .....+++|++|+++++ .++.
T Consensus 78 --~~~~l~~L~~L~L~~n~-l~~~~~--------------------------------~~~~~l~~L~~L~L~~N-~l~~ 121 (251)
T 3m19_A 78 --VFDDLTELGTLGLANNQ-LASLPL--------------------------------GVFDHLTQLDKLYLGGN-QLKS 121 (251)
T ss_dssp --TTTTCTTCCEEECTTSC-CCCCCT--------------------------------TTTTTCTTCCEEECCSS-CCCC
T ss_pred --HhccCCcCCEEECCCCc-ccccCh--------------------------------hHhcccCCCCEEEcCCC-cCCC
Confidence 14566777777776654 332221 12356789999999985 6777
Q ss_pred eccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccc
Q 014145 239 LWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKM 313 (430)
Q Consensus 239 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~ 313 (430)
+....+ ..+++|+.|+++++ .+..++. .+..+++|+.|+++++ .+..++.. .+..+++|++|++++++.
T Consensus 122 ~~~~~~---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 122 LPSGVF---DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHG-AFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSCCB
T ss_pred cChhHh---ccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCce
Confidence 766655 77899999999986 5566655 4668899999999986 46666543 356788899999987653
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-11 Score=122.01 Aligned_cols=184 Identities=17% Similarity=0.198 Sum_probs=112.1
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
+.++..+.+.... +.++. +...+++|+.|++++|. +..++ . +..+++|+.|++++| .+..+
T Consensus 20 l~~l~~l~l~~~~-i~~~~-----~~~~L~~L~~L~l~~n~-i~~l~-~--l~~l~~L~~L~Ls~N-~l~~~-------- 80 (605)
T 1m9s_A 20 FAETIKDNLKKKS-VTDAV-----TQNELNSIDQIIANNSD-IKSVQ-G--IQYLPNVTKLFLNGN-KLTDI-------- 80 (605)
T ss_dssp HHHHHHHHTTCSC-TTSEE-----CHHHHTTCCCCBCTTCC-CCCCT-T--GGGCTTCCEEECTTS-CCCCC--------
T ss_pred HHHHHHHhccCCC-ccccc-----chhcCCCCCEEECcCCC-CCCCh-H--HccCCCCCEEEeeCC-CCCCC--------
Confidence 3345555555443 33321 22468899999999884 55543 2 678999999999998 45555
Q ss_pred CccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccCCCc
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEEN 205 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~ 205 (430)
+. +..+++|+.|+++++ .+..++. +..+++|++|++.+|. ++.++ +++|+.|++++|.+..+.
T Consensus 81 -~~--l~~l~~L~~L~Ls~N-~l~~l~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l~---- 147 (605)
T 1m9s_A 81 -KP--LTNLKNLGWLFLDEN-KIKDLSS----LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDIT---- 147 (605)
T ss_dssp -GG--GGGCTTCCEEECCSS-CCCCCTT----STTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCCG----
T ss_pred -hh--hccCCCCCEEECcCC-CCCCChh----hccCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCch----
Confidence 22 478899999999986 5555542 7788899999998876 44433 345666666665544432
Q ss_pred eeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccC
Q 014145 206 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c 285 (430)
.+..+++|+.|+++++ .+..+.+ + ..+++|+.|++++| .+..++ .+..+++|+.|++++|
T Consensus 148 ------------~l~~l~~L~~L~Ls~N-~l~~~~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 148 ------------VLSRLTKLDTLSLEDN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ 207 (605)
T ss_dssp ------------GGGSCTTCSEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE
T ss_pred ------------hhcccCCCCEEECcCC-cCCCchh--h---ccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC
Confidence 2344556666666554 3433322 2 45556666666554 233332 3445555666666554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4.3e-11 Score=122.66 Aligned_cols=165 Identities=16% Similarity=0.270 Sum_probs=127.0
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|+.|+++++. +..+. .. ..+++|+.|++++| .+..+++ +..+++|+.|++++| .+..+
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N-~l~~l------- 102 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQ-GI----QYLPNVTKLFLNGN-KLTDIKP---LTNLKNLGWLFLDEN-KIKDL------- 102 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCT-TG----GGCTTCCEEECTTS-CCCCCGG---GGGCTTCCEEECCSS-CCCCC-------
T ss_pred cCCCCCEEECcCCC-CCCCh-HH----ccCCCCCEEEeeCC-CCCCChh---hccCCCCCEEECcCC-CCCCC-------
Confidence 56789999999876 66532 22 57899999999998 4666444 668999999999998 45554
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccCCC
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEE 204 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~ 204 (430)
.. +..+++|+.|+++++ .+..++. +..+++|+.|.+.+|. ++.++ +++|+.|++++|.+..+.
T Consensus 103 ---~~-l~~l~~L~~L~Ls~N-~l~~l~~----l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~--- 169 (605)
T 1m9s_A 103 ---SS-LKDLKKLKSLSLEHN-GISDING----LVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIV--- 169 (605)
T ss_dssp ---TT-STTCTTCCEEECTTS-CCCCCGG----GGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCG---
T ss_pred ---hh-hccCCCCCEEEecCC-CCCCCcc----ccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCch---
Confidence 23 378899999999986 4555533 7789999999999886 55444 578999999999987755
Q ss_pred ceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCC
Q 014145 205 NFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK 263 (430)
Q Consensus 205 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 263 (430)
....+++|+.|+++++ .+..+. .+ ..+++|+.|++++++.
T Consensus 170 -------------~l~~l~~L~~L~Ls~N-~i~~l~--~l---~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 170 -------------PLAGLTKLQNLYLSKN-HISDLR--AL---AGLKNLDVLELFSQEC 209 (605)
T ss_dssp -------------GGTTCTTCCEEECCSS-CCCBCG--GG---TTCTTCSEEECCSEEE
T ss_pred -------------hhccCCCCCEEECcCC-CCCCCh--HH---ccCCCCCEEEccCCcC
Confidence 2567899999999996 666652 23 7889999999998754
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.5e-11 Score=103.27 Aligned_cols=150 Identities=15% Similarity=0.212 Sum_probs=89.0
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+++|++|+++++. +..++ +. ..+++|++|++++| .+... + .+..+++|++|++++|. +....
T Consensus 42 ~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~l~~n-~~~~~-~--~l~~l~~L~~L~l~~n~-l~~~~------ 104 (197)
T 4ezg_A 42 QMNSLTYITLANIN-VTDLT-GI----EYAHNIKDLTINNI-HATNY-N--PISGLSNLERLRIMGKD-VTSDK------ 104 (197)
T ss_dssp HHHTCCEEEEESSC-CSCCT-TG----GGCTTCSEEEEESC-CCSCC-G--GGTTCTTCCEEEEECTT-CBGGG------
T ss_pred hcCCccEEeccCCC-ccChH-HH----hcCCCCCEEEccCC-CCCcc-h--hhhcCCCCCEEEeECCc-cCccc------
Confidence 45677778777665 55433 22 46777888888777 34332 2 25567778888887774 33210
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceee
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFL 208 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 208 (430)
+.. +..+++|++|+++++......+.. +..+++|++|++.+|..++.++
T Consensus 105 --~~~-l~~l~~L~~L~Ls~n~i~~~~~~~---l~~l~~L~~L~L~~n~~i~~~~------------------------- 153 (197)
T 4ezg_A 105 --IPN-LSGLTSLTLLDISHSAHDDSILTK---INTLPKVNSIDLSYNGAITDIM------------------------- 153 (197)
T ss_dssp --SCC-CTTCTTCCEEECCSSBCBGGGHHH---HTTCSSCCEEECCSCTBCCCCG-------------------------
T ss_pred --Chh-hcCCCCCCEEEecCCccCcHhHHH---HhhCCCCCEEEccCCCCccccH-------------------------
Confidence 233 366777777777775433222222 5567777777777765344332
Q ss_pred ecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecC
Q 014145 209 TDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 209 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
....+++|+.|+++++ .++.+. .+ ..+++|+.|++++.
T Consensus 154 ---------~l~~l~~L~~L~l~~n-~i~~~~--~l---~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 154 ---------PLKTLPELKSLNIQFD-GVHDYR--GI---EDFPKLNQLYAFSQ 191 (197)
T ss_dssp ---------GGGGCSSCCEEECTTB-CCCCCT--TG---GGCSSCCEEEECBC
T ss_pred ---------hhcCCCCCCEEECCCC-CCcChH--Hh---ccCCCCCEEEeeCc
Confidence 2345667777777764 455554 22 56677777777764
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.2e-12 Score=122.34 Aligned_cols=89 Identities=11% Similarity=-0.041 Sum_probs=47.0
Q ss_pred CCCcceeecccccCCeeeccCC-CCCCCCCC-CcceEEEeCCCCCCccCchhHHHhc-----CCCCEEEEecCCCccEec
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQ-ALPVSFFN-NLRHLVVDDCTNMLSAIPANLIRCL-----NNLRWLEVRNCDSLEEVL 122 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~ 122 (430)
.++|++|+++++. +....... ......++ +|++|++++| .+....+.. +..+ ++|++|++++|. +....
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDE-LVQILAAIPANVTSLNLSGNF-LSYKS 96 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHH-HHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHH-HHHHHhccCCCccEEECcCCc-CChHH
Confidence 3448888888776 55422100 00003455 7888888877 455433332 3333 778888888774 43321
Q ss_pred ccccccCCccCc---CCcC-CccceeecCCcc
Q 014145 123 HLEELNADKEHI---GPLF-PKLFELTLMDLP 150 (430)
Q Consensus 123 ~~~~~~~~~~~l---~~~l-~~L~~L~l~~~~ 150 (430)
+..+ +..+ ++|++|+++++.
T Consensus 97 --------~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 97 --------SDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp --------HHHHHHHHHTSCTTCCEEECCSSC
T ss_pred --------HHHHHHHHHhCCCCccEEECcCCc
Confidence 0111 1223 677777777753
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-12 Score=123.89 Aligned_cols=140 Identities=14% Similarity=0.088 Sum_probs=90.8
Q ss_pred CCCCEEecccCCCceeeccCC-chhhhhcccccEEEeecCCCcc-----cccCCcccCCCCCEEEEccCCCc-----ccc
Q 014145 223 PQLRYLELSRLHKVQHLWKEN-DESNKAFANLIRLKISECSKLQ-----KLVTPSWHLENLATLEVSKCHGL-----INV 291 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~-----~l~~~l~~l~~L~~L~l~~c~~l-----~~l 291 (430)
++|++|+++++ .+....... ......+++|++|++++|..-. .++..+..+++|+.|++++|. + ..+
T Consensus 159 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l 236 (386)
T 2ca6_A 159 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL 236 (386)
T ss_dssp CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred CCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence 89999999986 343211110 0112578899999999985432 233367789999999999985 4 333
Q ss_pred cCchhhccccccceEeeccccccchhhcccccccCCcc--eeecccceEeccCCCCCce-----eccCCcccCCCCccEE
Q 014145 292 LTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC--VVFEELGYLGLDCLPSLTS-----FCLGNYALEFPSLEHV 364 (430)
Q Consensus 292 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~c~~L~~-----~~~~~~~~~~~~L~~L 364 (430)
+. .+..+++|++|++++|. +...... ..+... ..+++|++|++++| .++. ++... ...+++|++|
T Consensus 237 ~~--~l~~~~~L~~L~L~~n~-i~~~~~~---~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l-~~~l~~L~~L 308 (386)
T 2ca6_A 237 AI--ALKSWPNLRELGLNDCL-LSARGAA---AVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVI-DEKMPDLLFL 308 (386)
T ss_dssp HH--HGGGCTTCCEEECTTCC-CCHHHHH---HHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHH-HHHCTTCCEE
T ss_pred HH--HHccCCCcCEEECCCCC-CchhhHH---HHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHH-HhcCCCceEE
Confidence 32 35678999999999986 3332100 000111 12789999999997 4554 54311 1247999999
Q ss_pred eeccCCCC
Q 014145 365 VVRQCPTM 372 (430)
Q Consensus 365 ~l~~c~~l 372 (430)
++.+|+--
T Consensus 309 ~l~~N~l~ 316 (386)
T 2ca6_A 309 ELNGNRFS 316 (386)
T ss_dssp ECTTSBSC
T ss_pred EccCCcCC
Confidence 99998543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-10 Score=113.82 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=77.5
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.+|+.|+++++. +..++ ...+++|++|+++++ ++..+ | ..+++|++|++++| .+..+
T Consensus 59 ~~L~~L~Ls~n~-L~~lp------~~l~~~L~~L~Ls~N-~l~~i-p----~~l~~L~~L~Ls~N-~l~~i--------- 115 (571)
T 3cvr_A 59 NQFSELQLNRLN-LSSLP------DNLPPQITVLEITQN-ALISL-P----ELPASLEYLDACDN-RLSTL--------- 115 (571)
T ss_dssp TTCSEEECCSSC-CSCCC------SCCCTTCSEEECCSS-CCSCC-C----CCCTTCCEEECCSS-CCSCC---------
T ss_pred CCccEEEeCCCC-CCccC------HhHcCCCCEEECcCC-CCccc-c----cccCCCCEEEccCC-CCCCc---------
Confidence 389999999876 66633 233588999999997 46654 3 24789999999998 45555
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcc
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKL 200 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~ 200 (430)
|. + .. +|++|+++++ .+..+|. .+++|++|++.++. ++.++ +++|+.|++++|.+..+
T Consensus 116 p~-l-~~--~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~L~~l 175 (571)
T 3cvr_A 116 PE-L-PA--SLKHLDVDNN-QLTMLPE------LPALLEYINADNNQ-LTMLPELPTSLEVLSVRNNQLTFL 175 (571)
T ss_dssp CC-C-CT--TCCEEECCSS-CCSCCCC------CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCC
T ss_pred ch-h-hc--CCCEEECCCC-cCCCCCC------cCccccEEeCCCCc-cCcCCCcCCCcCEEECCCCCCCCc
Confidence 34 3 22 8999999986 4555543 46778888887765 54443 34555555555555443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-11 Score=118.47 Aligned_cols=240 Identities=11% Similarity=0.013 Sum_probs=139.6
Q ss_pred CCCcceEEEeCCCCCCccCch---hHHHhcC-CCCEEEEecCCCccEecccccccCCccCcCCc-----CCccceeecCC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPA---NLIRCLN-NLRWLEVRNCDSLEEVLHLEELNADKEHIGPL-----FPKLFELTLMD 148 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~---~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~-----l~~L~~L~l~~ 148 (430)
.++|++|++++|. +....+. ..+.+++ +|++|++++| .+.... +..+ .. .++|++|++++
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~--------~~~l-~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKN--------SDEL-VQILAAIPANVTSLNLSG 89 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSC--------HHHH-HHHHHTSCTTCCEEECCS
T ss_pred CCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHH--------HHHH-HHHHhccCCCccEEECcC
Confidence 4569999999884 6554432 3366777 8999999988 344331 1111 22 38899999998
Q ss_pred ccccccccCCc--cccccC-CCccEEEeccCCCccccc-----------CCCceEEEecCCCCCcccCCCceeeecCccc
Q 014145 149 LPKLKRFCNFT--ENIIEM-PELRYLAIENCPDMETFI-----------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQP 214 (430)
Q Consensus 149 ~~~l~~~~~~~--~~~~~~-~~L~~L~l~~c~~l~~~~-----------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~ 214 (430)
+. +....... ..+..+ ++|++|++.+|. ++..+ +.+|++|++++|.+..... ..
T Consensus 90 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~----------~~ 157 (362)
T 3goz_A 90 NF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS----------DE 157 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH----------HH
T ss_pred Cc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH----------HH
Confidence 74 33221100 002234 789999998886 55544 2589999999988664220 00
Q ss_pred ccccCCCCC-CCCEEecccCCCceeeccCCch-hhhhc-ccccEEEeecCCCccc-----ccCCccc-CCCCCEEEEccC
Q 014145 215 LFDEKVAFP-QLRYLELSRLHKVQHLWKENDE-SNKAF-ANLIRLKISECSKLQK-----LVTPSWH-LENLATLEVSKC 285 (430)
Q Consensus 215 ~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~-~~~~l-~~L~~L~l~~c~~l~~-----l~~~l~~-l~~L~~L~l~~c 285 (430)
+.......+ +|++|+++++ .++......+. ....+ ++|++|+++++. +.. ++..+.. .++|++|++++|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 111122343 8999999986 55543332221 11334 589999999875 333 4444444 358999999986
Q ss_pred CCcccccCc---hhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCC
Q 014145 286 HGLINVLTL---STSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLP 344 (430)
Q Consensus 286 ~~l~~l~~~---~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 344 (430)
.+.+.+.. .....+++|++|++++|. +..+..............+++|+.|++++.+
T Consensus 236 -~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 236 -CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp -CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred -CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 45554321 123567889999998875 1111100001111122236778888888764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.8e-10 Score=98.37 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=15.1
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
++|++|+++++ .+..+ +...++.+++|++|++++|
T Consensus 28 ~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n 62 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSL-PNGVFDELTSLTQLYLGGN 62 (208)
T ss_dssp TTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSS
T ss_pred CCCcEEEcCCC-ccCcC-ChhhhcccccCcEEECCCC
Confidence 44555555544 23322 2222344555555555554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=105.15 Aligned_cols=109 Identities=19% Similarity=0.285 Sum_probs=61.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
++.+++... .+.++..+++++.. ++++. .. ..+++|+.|++++| ++..+. + +..+++|++|++++| .+
T Consensus 8 ~i~~~~pd~-~l~~l~~l~l~~~~-i~~~~-~~----~~l~~L~~L~l~~n-~i~~l~--~-l~~l~~L~~L~L~~N-~i 75 (263)
T 1xeu_A 8 PINQVFPDP-GLANAVKQNLGKQS-VTDLV-SQ----KELSGVQNFNGDNS-NIQSLA--G-MQFFTNLKELHLSHN-QI 75 (263)
T ss_dssp EHHHHCCSH-HHHHHHHHHHTCSC-TTSEE-CH----HHHTTCSEEECTTS-CCCCCT--T-GGGCTTCCEEECCSS-CC
T ss_pred CHHHhCCCH-HHHHHHHHHhcCCC-ccccc-ch----hhcCcCcEEECcCC-Ccccch--H-HhhCCCCCEEECCCC-cc
Confidence 444444322 35566666776554 55432 11 45778888888877 455533 1 556778888888777 35
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 176 (430)
..+ +. +..+++|++|+++++ .+..++. ... ++|++|++.+|
T Consensus 76 ~~~---------~~--l~~l~~L~~L~L~~N-~l~~l~~----~~~-~~L~~L~L~~N 116 (263)
T 1xeu_A 76 SDL---------SP--LKDLTKLEELSVNRN-RLKNLNG----IPS-ACLSRLFLDNN 116 (263)
T ss_dssp CCC---------GG--GTTCSSCCEEECCSS-CCSCCTT----CCC-SSCCEEECCSS
T ss_pred CCC---------hh--hccCCCCCEEECCCC-ccCCcCc----ccc-CcccEEEccCC
Confidence 444 22 366777777777775 3443432 111 45555555544
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=97.08 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=30.7
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCc
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
+.++.|+++++ .+..+.+...+..+++|++|++++| .+..+ +.+.+..+++|++|+++++
T Consensus 32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i---------~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDI---------EEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEE---------CTTTTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEE---------CHHHhCCCCCCCEEECCCC
Confidence 44556666654 3444333333455666666666665 34444 2333355555555555553
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-09 Score=109.72 Aligned_cols=178 Identities=18% Similarity=0.166 Sum_probs=123.7
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
.+|+.|+++++ ++..+ |..+ +++|++|++++| .+..+ | ..+++|++|+++++ .+..+|.
T Consensus 59 ~~L~~L~Ls~n-~L~~l-p~~l---~~~L~~L~Ls~N-~l~~i---------p----~~l~~L~~L~Ls~N-~l~~ip~- 117 (571)
T 3cvr_A 59 NQFSELQLNRL-NLSSL-PDNL---PPQITVLEITQN-ALISL---------P----ELPASLEYLDACDN-RLSTLPE- 117 (571)
T ss_dssp TTCSEEECCSS-CCSCC-CSCC---CTTCSEEECCSS-CCSCC---------C----CCCTTCCEEECCSS-CCSCCCC-
T ss_pred CCccEEEeCCC-CCCcc-CHhH---cCCCCEEECcCC-CCccc---------c----cccCCCCEEEccCC-CCCCcch-
Confidence 38999999987 46664 3332 478999999998 45555 4 34689999999986 5555654
Q ss_pred ccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 159 TENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
+.. +|++|++.++. ++.++ +++|+.|++++|.+..+. ..+++|+.|+++++ .+
T Consensus 118 ---l~~--~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~lp------------------~~l~~L~~L~Ls~N-~L 172 (571)
T 3cvr_A 118 ---LPA--SLKHLDVDNNQ-LTMLPELPALLEYINADNNQLTMLP------------------ELPTSLEVLSVRNN-QL 172 (571)
T ss_dssp ---CCT--TCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC------------------CCCTTCCEEECCSS-CC
T ss_pred ---hhc--CCCEEECCCCc-CCCCCCcCccccEEeCCCCccCcCC------------------CcCCCcCEEECCCC-CC
Confidence 122 89999998875 55555 567888888888877655 15678888888885 56
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCC-------CEEEEccCCCcccccCchhhccccccceEeec
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENL-------ATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L-------~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 309 (430)
+.++. + . ++|+.|+++++ .++.+|. +.. +| +.|++++| .++.+|. .+..+++|+.|+++
T Consensus 173 ~~lp~--l---~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~--~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 173 TFLPE--L---P--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCREN-RITHIPE--NILSLDPTCTIILE 238 (571)
T ss_dssp SCCCC--C---C--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSS-CCCCCCG--GGGGSCTTEEEECC
T ss_pred CCcch--h---h--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCC-cceecCH--HHhcCCCCCEEEee
Confidence 66543 3 3 78888888886 5667765 333 66 88888885 5666665 24558888888888
Q ss_pred cccccch
Q 014145 310 DCKMIEQ 316 (430)
Q Consensus 310 ~c~~l~~ 316 (430)
+++....
T Consensus 239 ~N~l~~~ 245 (571)
T 3cvr_A 239 DNPLSSR 245 (571)
T ss_dssp SSSCCHH
T ss_pred CCcCCCc
Confidence 8764333
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-09 Score=95.32 Aligned_cols=149 Identities=16% Similarity=0.117 Sum_probs=95.5
Q ss_pred cCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc
Q 014145 104 LNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI 183 (430)
Q Consensus 104 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 183 (430)
.++|++|++++| .+..+ +...+..+++|++|+++++ .+..++.. .+..+++|++|++.++. ++.++
T Consensus 27 ~~~l~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~n-~l~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~ 92 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSL---------PNGVFDELTSLTQLYLGGN-KLQSLPNG--VFNKLTSLTYLNLSTNQ-LQSLP 92 (208)
T ss_dssp CTTCSEEECCSS-CCCCC---------CTTTTTTCTTCSEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSSC-CCCCC
T ss_pred CCCCcEEEcCCC-ccCcC---------ChhhhcccccCcEEECCCC-ccCccChh--hcCCCCCcCEEECCCCc-CCccC
Confidence 467999999988 45555 4454577889999999885 45555332 13567777777777664 33322
Q ss_pred CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCC
Q 014145 184 SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSK 263 (430)
Q Consensus 184 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~ 263 (430)
+ .....+++|++|+++++ .++.+....+ ..+++|+.|+++++ .
T Consensus 93 ~--------------------------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~l~~N-~ 135 (208)
T 2o6s_A 93 N--------------------------------GVFDKLTQLKELALNTN-QLQSLPDGVF---DKLTQLKDLRLYQN-Q 135 (208)
T ss_dssp T--------------------------------TTTTTCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-C
T ss_pred H--------------------------------hHhcCccCCCEEEcCCC-cCcccCHhHh---ccCCcCCEEECCCC-c
Confidence 1 11356778888888774 5666555444 66778888888875 3
Q ss_pred cccccCC-cccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 264 LQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 264 l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+..++.. +..+++|+.|++++++ +.+.++.|++|+++.+.
T Consensus 136 l~~~~~~~~~~l~~L~~L~l~~N~---------~~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 136 LKSVPDGVFDRLTSLQYIWLHDNP---------WDCTCPGIRYLSEWINK 176 (208)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCC---------BCCCTTTTHHHHHHHHH
T ss_pred cceeCHHHhccCCCccEEEecCCC---------eecCCCCHHHHHHHHHh
Confidence 4455443 5567788888887763 23445667777666543
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.6e-10 Score=101.15 Aligned_cols=107 Identities=22% Similarity=0.342 Sum_probs=80.3
Q ss_pred ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 47 MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 47 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
...+++|++|+++++. +..+. +. ..+++|+.|+++++ .+..+++ +..+++|++|++++| .+..+
T Consensus 37 ~~~l~~L~~L~l~~n~-i~~l~-~l----~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~l----- 100 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSN-IQSLA-GM----QFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKNL----- 100 (263)
T ss_dssp HHHHTTCSEEECTTSC-CCCCT-TG----GGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSCC-----
T ss_pred hhhcCcCcEEECcCCC-cccch-HH----hhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCCc-----
Confidence 4467899999999886 77643 22 57899999999998 4666544 678999999999998 46555
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccc
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETF 182 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 182 (430)
|. + .. ++|++|+++++ .+..++. +..+++|++|++.++. ++.+
T Consensus 101 ----~~-~-~~-~~L~~L~L~~N-~l~~~~~----l~~l~~L~~L~Ls~N~-i~~~ 143 (263)
T 1xeu_A 101 ----NG-I-PS-ACLSRLFLDNN-ELRDTDS----LIHLKNLEILSIRNNK-LKSI 143 (263)
T ss_dssp ----TT-C-CC-SSCCEEECCSS-CCSBSGG----GTTCTTCCEEECTTSC-CCBC
T ss_pred ----Cc-c-cc-CcccEEEccCC-ccCCChh----hcCcccccEEECCCCc-CCCC
Confidence 22 2 23 89999999996 5555542 6788899999988875 5443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.9e-09 Score=93.34 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=5.1
Q ss_pred cCCCCCEEEEcc
Q 014145 273 HLENLATLEVSK 284 (430)
Q Consensus 273 ~l~~L~~L~l~~ 284 (430)
.+++|+.|++++
T Consensus 150 ~l~~L~~L~L~~ 161 (220)
T 2v9t_B 150 PLRAIQTMHLAQ 161 (220)
T ss_dssp TCTTCCEEECCS
T ss_pred CCCCCCEEEeCC
Confidence 334444444443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-09 Score=95.63 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=62.9
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+..+|.++. ++|++|+++++. +..+.... ...+++|+.|+++++. +..+ +...+..+++|++|++++| .+.
T Consensus 31 l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~---~~~l~~L~~L~L~~N~-l~~i-~~~~~~~l~~L~~L~Ls~N-~l~ 101 (229)
T 3e6j_A 31 HASVPAGIP--TNAQILYLHDNQ-ITKLEPGV---FDSLINLKELYLGSNQ-LGAL-PVGVFDSLTQLTVLDLGTN-QLT 101 (229)
T ss_dssp CSSCCSCCC--TTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEEECCSS-CCC
T ss_pred cCccCCCCC--CCCCEEEcCCCc-cCccCHHH---hhCccCCcEEECCCCC-CCCc-ChhhcccCCCcCEEECCCC-cCC
Confidence 444444332 567777776655 44432111 1356667777777653 4443 3233556677777777766 344
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 176 (430)
.+ +...+..+++|++|+++++ .+..+|.. +..+++|++|++.++
T Consensus 102 ~l---------~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 102 VL---------PSAVFDRLVHLKELFMCCN-KLTELPRG---IERLTHLTHLALDQN 145 (229)
T ss_dssp CC---------CTTTTTTCTTCCEEECCSS-CCCSCCTT---GGGCTTCSEEECCSS
T ss_pred cc---------ChhHhCcchhhCeEeccCC-cccccCcc---cccCCCCCEEECCCC
Confidence 44 3444456667777777664 44455433 455666666666654
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-09 Score=102.05 Aligned_cols=118 Identities=17% Similarity=0.184 Sum_probs=67.7
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+..+|..+ .+.++.|+++++. ++.+.... +. ..+++|+.|+++++ .+..+.+. .+.++++|++|++++| .+.
T Consensus 30 l~~iP~~~--~~~l~~L~Ls~N~-l~~l~~~~-~~-~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N-~l~ 101 (361)
T 2xot_A 30 LPNVPQSL--PSYTALLDLSHNN-LSRLRAEW-TP-TRLTNLHSLLLSHN-HLNFISSE-AFVPVPNLRYLDLSSN-HLH 101 (361)
T ss_dssp CSSCCSSC--CTTCSEEECCSSC-CCEECTTS-SS-SCCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSS-CCC
T ss_pred cCccCccC--CCCCCEEECCCCC-CCccChhh-hh-hcccccCEEECCCC-cCCccChh-hccCCCCCCEEECCCC-cCC
Confidence 44555543 2357777777665 66544332 10 15677777777776 35544333 2566777777777776 355
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ +...+..+++|+.|+++++ .+..++.. .+..+++|++|++.++.
T Consensus 102 ~~---------~~~~~~~l~~L~~L~L~~N-~i~~~~~~--~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 102 TL---------DEFLFSDLQALEVLLLYNN-HIVVVDRN--AFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp EE---------CTTTTTTCTTCCEEECCSS-CCCEECTT--TTTTCTTCCEEECCSSC
T ss_pred cC---------CHHHhCCCcCCCEEECCCC-cccEECHH--HhCCcccCCEEECCCCc
Confidence 55 4444566777777777765 33333211 14556666666666553
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.3e-09 Score=93.22 Aligned_cols=60 Identities=20% Similarity=0.147 Sum_probs=32.2
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCc
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
.++|++|+++++ .+..+.+. .+..+++|++|++++|. +..+ +...+..+++|++|+++++
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~~~-~~~~l~~L~~L~L~~N~-l~~i---------~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLEPG-VFDSLINLKELYLGSNQ-LGAL---------PVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CCCC---------CTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEEcCCC-ccCccCHH-HhhCccCCcEEECCCCC-CCCc---------ChhhcccCCCcCEEECCCC
Confidence 456666666665 34443332 24556666666666663 4443 3333455566666666554
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.95 E-value=8.7e-09 Score=98.95 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=42.9
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc----ccCCCCCEEEEccCCCcccccCch
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS----WHLENLATLEVSKCHGLINVLTLS 295 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l----~~l~~L~~L~l~~c~~l~~l~~~~ 295 (430)
..+++|+.|+++++ .+..+.+..+ ..+++|+.|+++++ .+..+|... ..+++|+.|+++++ .+..++..
T Consensus 109 ~~l~~L~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~- 181 (361)
T 2xot_A 109 SDLQALEVLLLYNN-HIVVVDRNAF---EDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLT- 181 (361)
T ss_dssp TTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCCHH-
T ss_pred CCCcCCCEEECCCC-cccEECHHHh---CCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHH-
Confidence 34455566666553 4444444444 55566666666654 344444332 34666777777664 35554432
Q ss_pred hhccccc--cceEeeccc
Q 014145 296 TSESLVN--LGRMKIADC 311 (430)
Q Consensus 296 ~~~~l~~--L~~L~l~~c 311 (430)
.+..++. |+.|++.++
T Consensus 182 ~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp HHHHSCHHHHTTEECCSS
T ss_pred HhhhccHhhcceEEecCC
Confidence 2334444 356666653
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-08 Score=90.13 Aligned_cols=37 Identities=16% Similarity=0.209 Sum_probs=17.1
Q ss_pred CCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecC
Q 014145 221 AFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
.+++|+.|+++++ .++.+....+ ..+++|+.|+++++
T Consensus 126 ~l~~L~~L~L~~N-~l~~~~~~~~---~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 126 DLHNLNLLSLYDN-KLQTIAKGTF---SPLRAIQTMHLAQN 162 (220)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTT---TTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC-cCCEECHHHH---hCCCCCCEEEeCCC
Confidence 3445555555542 3444433333 44455555555443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-08 Score=89.19 Aligned_cols=149 Identities=11% Similarity=0.095 Sum_probs=76.6
Q ss_pred ceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccc
Q 014145 82 RHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTEN 161 (430)
Q Consensus 82 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~ 161 (430)
+.+++++. .+..+ |..+ ...+++|++++| .+..+. +.+.+..+++|++|+++++ .+..++.. .
T Consensus 14 ~~l~~s~n-~l~~i-P~~~---~~~~~~L~L~~N-~l~~~~--------~~~~~~~l~~L~~L~L~~N-~i~~i~~~--~ 76 (220)
T 2v70_A 14 TTVDCSNQ-KLNKI-PEHI---PQYTAELRLNNN-EFTVLE--------ATGIFKKLPQLRKINFSNN-KITDIEEG--A 76 (220)
T ss_dssp TEEECCSS-CCSSC-CSCC---CTTCSEEECCSS-CCCEEC--------CCCCGGGCTTCCEEECCSS-CCCEECTT--T
T ss_pred CEeEeCCC-CcccC-ccCC---CCCCCEEEcCCC-cCCccC--------chhhhccCCCCCEEECCCC-cCCEECHH--H
Confidence 46666664 34443 3221 345677887777 354441 2233466777777777764 34444321 1
Q ss_pred cccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeecc
Q 014145 162 IIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWK 241 (430)
Q Consensus 162 ~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 241 (430)
+..+++|++|++.++. ++.+++ ..+..+++|++|+++++ .++.+.+
T Consensus 77 ~~~l~~L~~L~Ls~N~-l~~~~~--------------------------------~~~~~l~~L~~L~Ls~N-~l~~~~~ 122 (220)
T 2v70_A 77 FEGASGVNEILLTSNR-LENVQH--------------------------------KMFKGLESLKTLMLRSN-RITCVGN 122 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCG--------------------------------GGGTTCSSCCEEECTTS-CCCCBCT
T ss_pred hCCCCCCCEEECCCCc-cCccCH--------------------------------hHhcCCcCCCEEECCCC-cCCeECH
Confidence 4455556666555543 222111 11244566666666663 4555444
Q ss_pred CCchhhhhcccccEEEeecCCCcccc-cCCcccCCCCCEEEEccC
Q 014145 242 ENDESNKAFANLIRLKISECSKLQKL-VTPSWHLENLATLEVSKC 285 (430)
Q Consensus 242 ~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c 285 (430)
..+ ..+++|+.|+++++. +..+ |..+..+++|+.|+++++
T Consensus 123 ~~~---~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 123 DSF---IGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp TSS---TTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSC
T ss_pred hHc---CCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCc
Confidence 444 555666666666643 3333 444455556666666554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.6e-11 Score=121.02 Aligned_cols=106 Identities=17% Similarity=0.081 Sum_probs=59.5
Q ss_pred cCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCC
Q 014145 183 ISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECS 262 (430)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~ 262 (430)
++..|+.|++++|.+.++. .++.+++|+.|+++++ .++.++ ..+ ..+++|+.|+++++
T Consensus 439 ~~~~L~~L~Ls~n~l~~lp----------------~~~~l~~L~~L~Ls~N-~l~~lp-~~~---~~l~~L~~L~Ls~N- 496 (567)
T 1dce_A 439 EYADVRVLHLAHKDLTVLC----------------HLEQLLLVTHLDLSHN-RLRALP-PAL---AALRCLEVLQASDN- 496 (567)
T ss_dssp HHTTCSEEECTTSCCSSCC----------------CGGGGTTCCEEECCSS-CCCCCC-GGG---GGCTTCCEEECCSS-
T ss_pred CccCceEEEecCCCCCCCc----------------CccccccCcEeecCcc-cccccc-hhh---hcCCCCCEEECCCC-
Confidence 3445666666666655543 2345666777777664 455443 233 56666777777664
Q ss_pred CcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 263 KLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 263 ~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
.++.+| .+..+++|+.|+++++ .+..+.....++.+++|+.|++++++
T Consensus 497 ~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 497 ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 344455 5556666666666664 34444201124556666666666543
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-08 Score=94.28 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=63.0
Q ss_pred CCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCC-EEEEccCCCcccccCchhhcc
Q 014145 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLA-TLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~-~L~l~~c~~l~~l~~~~~~~~ 299 (430)
+++|+++++.++ +++.+....| ..+++|+++.+.+. +..++.. +..+++|+ .+++.+ .++.+...+ +..
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF---~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~a-F~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTF---AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGA-FMG 295 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTT---TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTT-TTT
T ss_pred cCCCeEEECCCC-CcceecHhhh---hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhh-hhC
Confidence 678999999874 5888877777 88889999988873 6666543 55788888 888876 577666543 567
Q ss_pred ccccceEeeccccccchh
Q 014145 300 LVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~ 317 (430)
|++|+.|++... .+..+
T Consensus 296 c~~L~~l~l~~n-~i~~I 312 (329)
T 3sb4_A 296 CDNLRYVLATGD-KITTL 312 (329)
T ss_dssp CTTEEEEEECSS-CCCEE
T ss_pred CccCCEEEeCCC-ccCcc
Confidence 888999988542 34444
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-08 Score=94.38 Aligned_cols=102 Identities=17% Similarity=0.156 Sum_probs=65.9
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccc-eEeccCCCCCceecc
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELG-YLGLDCLPSLTSFCL 351 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~L~~~~~ 351 (430)
.+++|+.+++.++ .++.++..+ +..+++|++|++.+. ++.+... ....+++|+ .+.+.+ +++.++.
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~--~l~~I~~ 290 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA--SVTAIEF 290 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTT-TTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT--TCCEECT
T ss_pred hcCCCeEEECCCC-CcceecHhh-hhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc--cceEEch
Confidence 3678888888764 366666543 566778888888653 4444211 112266777 788876 7777765
Q ss_pred CCcccCCCCccEEeeccCCCCcccCC-CCcCCCCceeee
Q 014145 352 GNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVK 389 (430)
Q Consensus 352 ~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~ 389 (430)
+ .+..|++|+++.+.+ ..++.++. .+..+++|+.|.
T Consensus 291 ~-aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 G-AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp T-TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred h-hhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 3 344678888888855 35666654 456777888765
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=86.64 Aligned_cols=131 Identities=21% Similarity=0.171 Sum_probs=65.6
Q ss_pred CCCCCEEecccCCCce--eeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCccc-ccCchhhc
Q 014145 222 FPQLRYLELSRLHKVQ--HLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLIN-VLTLSTSE 298 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~--~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~-l~~~~~~~ 298 (430)
.++|+.|+++++ .++ .++ ..+ ..+++|+.|+++++. +..+ ..+..+++|+.|++++|. +.. ++. ...
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~-~~~---~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~--~~~ 92 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIE-GLT---AEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGGLDM--LAE 92 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCS-SCC---GGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSCCCH--HHH
T ss_pred cccCCEEECCCC-CCChhhHH-HHH---HhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchHHHH--HHh
Confidence 345666666654 233 332 222 455666666666653 3433 445556666666666653 333 221 234
Q ss_pred cccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceecc--CCcccCCCCccEEeeccCC
Q 014145 299 SLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCL--GNYALEFPSLEHVVVRQCP 370 (430)
Q Consensus 299 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~--~~~~~~~~~L~~L~l~~c~ 370 (430)
.+++|++|++++|. +..+... .....+++|++|++.++ .++.++. ......+++|++|++.+|.
T Consensus 93 ~l~~L~~L~Ls~N~-l~~~~~~------~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 93 KLPNLTHLNLSGNK-LKDISTL------EPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HCTTCCEEECBSSS-CCSSGGG------GGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred hCCCCCEEeccCCc-cCcchhH------HHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 46666666666653 3332100 01122566666666665 3443332 0012346777777777764
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.4e-08 Score=84.63 Aligned_cols=133 Identities=16% Similarity=0.184 Sum_probs=99.2
Q ss_pred hhcccccEEEeecCCCc-ccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccC
Q 014145 248 KAFANLIRLKISECSKL-QKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEA 326 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l-~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 326 (430)
..+++|+.|++++|... ..+|..+..+++|+.|++++|. +..+. .+..+++|++|++++|..-..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~l~~L~~L~Ls~N~l~~~~~-------- 88 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVS---NLPKLPKLKKLELSENRIFGGLD-------- 88 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCS---SCCCCSSCCEEEEESCCCCSCCC--------
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChh---hhccCCCCCEEECcCCcCchHHH--------
Confidence 44588999999998643 3788777889999999999985 66662 46789999999999875322121
Q ss_pred CcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCC----CCcCCCCceeeeccccC
Q 014145 327 KGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQ----GVVDAPKLNKVKPTEEE 394 (430)
Q Consensus 327 ~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~----~~~~~~~L~~l~l~~~~ 394 (430)
.....+++|++|+++++ .++.++.......+++|++|++++| .++.++. .+..+++|+++++.++.
T Consensus 89 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 89 MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 11123889999999997 6777653223456899999999997 4556655 46678999999997653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.9e-08 Score=83.46 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=58.2
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC--CcccCCCCCEEEEccCCCcccccCc--
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT--PSWHLENLATLEVSKCHGLINVLTL-- 294 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~l~~l~~L~~L~l~~c~~l~~l~~~-- 294 (430)
.+.+++|++|+++++ .++.++...+ ..+++|+.|+++++ .+..+|. .+..+++|+.|++++++ +..++..
T Consensus 60 l~~l~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~ 133 (176)
T 1a9n_A 60 FPLLRRLKTLLVNNN-RICRIGEGLD---QALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRL 133 (176)
T ss_dssp CCCCSSCCEEECCSS-CCCEECSCHH---HHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHH
T ss_pred cccCCCCCEEECCCC-cccccCcchh---hcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHH
Confidence 456778888888875 5666654433 66788888888876 3455654 56677888888888764 4444431
Q ss_pred hhhccccccceEeecccc
Q 014145 295 STSESLVNLGRMKIADCK 312 (430)
Q Consensus 295 ~~~~~l~~L~~L~l~~c~ 312 (430)
..+..+++|+.|+++++.
T Consensus 134 ~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 134 YVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HHHHHCTTCSEETTEECC
T ss_pred HHHHHCCccceeCCCcCC
Confidence 125667778888777664
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.6e-08 Score=81.72 Aligned_cols=84 Identities=25% Similarity=0.288 Sum_probs=44.3
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc--CCcccCCCCCEEEEccCCCcccccCc--h
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLATLEVSKCHGLINVLTL--S 295 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~l~~~--~ 295 (430)
+.+++|++|+++++ .++...+..+ ..+++|+.|+++++. +..++ ..+..+++|++|++++| .+..++.. .
T Consensus 61 ~~l~~L~~L~Ls~n-~i~~~~~~~~---~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~ 134 (149)
T 2je0_A 61 PKLNKLKKLELSDN-RVSGGLEVLA---EKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYREN 134 (149)
T ss_dssp CCCTTCCEEECCSS-CCCSCTHHHH---HHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHH
T ss_pred hcCCCCCEEECCCC-cccchHHHHh---hhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHH
Confidence 44566666666664 3333111111 446667777776653 33332 44556667777777665 34444431 2
Q ss_pred hhccccccceEeec
Q 014145 296 TSESLVNLGRMKIA 309 (430)
Q Consensus 296 ~~~~l~~L~~L~l~ 309 (430)
.+..+++|++|+++
T Consensus 135 ~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 135 VFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHCTTCCEETTB
T ss_pred HHHHCCCcccccCC
Confidence 34556666666654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.9e-08 Score=83.50 Aligned_cols=85 Identities=20% Similarity=0.298 Sum_probs=47.1
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 299 (430)
..+++|+.|+++++ .++.+ ..+ ..+++|+.|+++++.....+|.....+++|++|++++|. ++.++....++.
T Consensus 39 ~~l~~L~~L~l~~n-~l~~~--~~~---~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~ 111 (149)
T 2je0_A 39 DEFEELEFLSTINV-GLTSI--ANL---PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKK 111 (149)
T ss_dssp TTCTTCCEEECTTS-CCCCC--TTC---CCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGG
T ss_pred hhcCCCcEEECcCC-CCCCc--hhh---hcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhh
Confidence 45667777777664 44444 222 556667777776654333344444456666666666653 444322123455
Q ss_pred ccccceEeeccc
Q 014145 300 LVNLGRMKIADC 311 (430)
Q Consensus 300 l~~L~~L~l~~c 311 (430)
+++|++|++++|
T Consensus 112 l~~L~~L~l~~N 123 (149)
T 2je0_A 112 LENLKSLDLFNC 123 (149)
T ss_dssp CTTCCEEECTTC
T ss_pred CCCCCEEeCcCC
Confidence 666666666665
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.67 E-value=6.6e-08 Score=83.99 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=68.5
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
++++|..+. ++|++|+++++. +..+.... ....+++|++|+++++ .+..+.|.. +.++++|++|++++| .+.
T Consensus 20 l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~--~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~ 91 (192)
T 1w8a_A 20 LKEIPRDIP--LHTTELLLNDNE-LGRISSDG--LFGRLPHLVKLELKRN-QLTGIEPNA-FEGASHIQELQLGEN-KIK 91 (192)
T ss_dssp CSSCCSCCC--TTCSEEECCSCC-CCSBCCSC--SGGGCTTCCEEECCSS-CCCCBCTTT-TTTCTTCCEEECCSC-CCC
T ss_pred cCcCccCCC--CCCCEEECCCCc-CCccCCcc--ccccCCCCCEEECCCC-CCCCcCHhH-cCCcccCCEEECCCC-cCC
Confidence 445554432 377777777665 55433211 0145777777777776 355543433 566777777777777 455
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccc-cCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF-CNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ +...+..+++|++|+++++ .+..+ +.. +..+++|++|++.+++
T Consensus 92 ~~---------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~---~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 92 EI---------SNKMFLGLHQLKTLNLYDN-QISCVMPGS---FEHLNSLTSLNLASNP 137 (192)
T ss_dssp EE---------CSSSSTTCTTCCEEECCSS-CCCEECTTS---STTCTTCCEEECTTCC
T ss_pred cc---------CHHHhcCCCCCCEEECCCC-cCCeeCHHH---hhcCCCCCEEEeCCCC
Confidence 55 3343466777777777775 33333 222 4566677777766654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-07 Score=81.13 Aligned_cols=103 Identities=18% Similarity=0.152 Sum_probs=70.3
Q ss_pred ceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccC
Q 014145 54 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 133 (430)
Q Consensus 54 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 133 (430)
+++++++.. ++.++ ....++|+.|+++++ .+..+++.+.+..+++|++|++++| .+..+ +..
T Consensus 11 ~~l~~s~~~-l~~ip------~~~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~---------~~~ 72 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIP------RDIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGI---------EPN 72 (192)
T ss_dssp TEEECTTSC-CSSCC------SCCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCB---------CTT
T ss_pred CEEEcCCCC-cCcCc------cCCCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCc---------CHh
Confidence 567777665 55533 233458999999987 4666555445678999999999998 45554 233
Q ss_pred cCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 134 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 134 l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+..+++|++|+++++ .+..++.. .+..+++|++|++.++.
T Consensus 73 ~~~~l~~L~~L~Ls~N-~l~~~~~~--~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 73 AFEGASHIQELQLGEN-KIKEISNK--MFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp TTTTCTTCCEEECCSC-CCCEECSS--SSTTCTTCCEEECCSSC
T ss_pred HcCCcccCCEEECCCC-cCCccCHH--HhcCCCCCCEEECCCCc
Confidence 3578899999999985 45555332 14567777777777764
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=8.2e-08 Score=83.49 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=66.3
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
++++|.++ +++|++|+++++. ++.++... ..+++|+.|+++++ .+..+.+ ..+.++++|++|++++| .+.
T Consensus 22 l~~ip~~~--~~~l~~L~L~~n~-i~~ip~~~----~~l~~L~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~Ls~N-~l~ 91 (193)
T 2wfh_A 22 LKVLPKGI--PRDVTELYLDGNQ-FTLVPKEL----SNYKHLTLIDLSNN-RISTLSN-QSFSNMTQLLTLILSYN-RLR 91 (193)
T ss_dssp CSSCCSCC--CTTCCEEECCSSC-CCSCCGGG----GGCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSS-CCC
T ss_pred CCcCCCCC--CCCCCEEECCCCc-CchhHHHh----hcccCCCEEECCCC-cCCEeCH-hHccCCCCCCEEECCCC-ccC
Confidence 44455443 3577777777665 55433222 45677777777775 3444333 23566777777777776 355
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ +...+..+++|++|+++++ .+..++.. .+..+++|+.|.+.+++
T Consensus 92 ~i---------~~~~f~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 92 CI---------PPRTFDGLKSLRLLSLHGN-DISVVPEG--AFNDLSALSHLAIGANP 137 (193)
T ss_dssp BC---------CTTTTTTCTTCCEEECCSS-CCCBCCTT--TTTTCTTCCEEECCSSC
T ss_pred Ee---------CHHHhCCCCCCCEEECCCC-CCCeeChh--hhhcCccccEEEeCCCC
Confidence 54 3333466677777777764 44444332 13456666666666554
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=98.56 E-value=2e-07 Score=79.56 Aligned_cols=82 Identities=17% Similarity=0.206 Sum_probs=45.8
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc-ccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS-WHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l-~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
++|+.|+++++ .++.+ ..+ ..+++|+.|+++++ .+..+|... ..+++|+.|+++++ .+..++....+..++
T Consensus 42 ~~L~~L~Ls~N-~l~~~--~~l---~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~ 113 (176)
T 1a9n_A 42 DQFDAIDFSDN-EIRKL--DGF---PLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLK 113 (176)
T ss_dssp TCCSEEECCSS-CCCEE--CCC---CCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCT
T ss_pred CCCCEEECCCC-CCCcc--ccc---ccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCC
Confidence 36777777764 45554 233 55666777777665 344555443 46666666666665 344444322344556
Q ss_pred ccceEeecccc
Q 014145 302 NLGRMKIADCK 312 (430)
Q Consensus 302 ~L~~L~l~~c~ 312 (430)
+|+.|++++++
T Consensus 114 ~L~~L~l~~N~ 124 (176)
T 1a9n_A 114 SLTYLCILRNP 124 (176)
T ss_dssp TCCEEECCSSG
T ss_pred CCCEEEecCCC
Confidence 66666666553
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.56 E-value=9.2e-06 Score=78.83 Aligned_cols=253 Identities=11% Similarity=0.088 Sum_probs=137.5
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
..++.+.+.. ++..+.... +.++ +|+.+.+..+ +..+ +...+.+ .+|+.+.+.+ .+..+..
T Consensus 113 ~~l~~i~ip~--~i~~I~~~a-F~~~-~L~~i~l~~~--i~~I---------~~~aF~~-~~L~~i~lp~--~l~~I~~- 173 (401)
T 4fdw_A 113 KGYNEIILPN--SVKSIPKDA-FRNS-QIAKVVLNEG--LKSI---------GDMAFFN-STVQEIVFPS--TLEQLKE- 173 (401)
T ss_dssp SSCSEEECCT--TCCEECTTT-TTTC-CCSEEECCTT--CCEE---------CTTTTTT-CCCCEEECCT--TCCEECS-
T ss_pred CCccEEEECC--ccCEehHhh-cccC-CccEEEeCCC--ccEE---------CHHhcCC-CCceEEEeCC--CccEehH-
Confidence 4555555554 444433322 4444 5777776543 5555 3333344 3566666664 4444422
Q ss_pred ccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccC
Q 014145 159 TENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (430)
.....|++|+.+.+.++. ++.++ ..+|+.+.+..+ +..+.. .....+++|+.+++..
T Consensus 174 -~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~--------------~aF~~~~~L~~l~l~~- 235 (401)
T 4fdw_A 174 -DIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGS--------------QAFLKTSQLKTIEIPE- 235 (401)
T ss_dssp -STTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECT--------------TTTTTCTTCCCEECCT-
T ss_pred -HHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehh--------------hHhhCCCCCCEEecCC-
Confidence 224566667777665432 43333 335555555432 322220 1235677888888875
Q ss_pred CCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCC----cccccCchhhccccccceEee
Q 014145 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHG----LINVLTLSTSESLVNLGRMKI 308 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~----l~~l~~~~~~~~l~~L~~L~l 308 (430)
+++.+....| .. .+|+.+.+.+ .+..++. .+..+++|+.+.+.+... ...++.. .+..|++|+.+.+
T Consensus 236 -~l~~I~~~aF---~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~-aF~~c~~L~~l~l 307 (401)
T 4fdw_A 236 -NVSTIGQEAF---RE-SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY-CLEGCPKLARFEI 307 (401)
T ss_dssp -TCCEECTTTT---TT-CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT-TTTTCTTCCEECC
T ss_pred -CccCcccccc---cc-CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHH-HhhCCccCCeEEe
Confidence 5677766666 44 6788888854 4555543 355778888888876421 1123332 3566778888887
Q ss_pred ccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCC-CcCC-CCce
Q 014145 309 ADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQG-VVDA-PKLN 386 (430)
Q Consensus 309 ~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~-~~L~ 386 (430)
.+ .++.+... ....+.+|+.+.+.+ +++.+..+ .+..+ +|+++.+.+. .+..++.+ +..+ .+++
T Consensus 308 ~~--~i~~I~~~-------aF~~c~~L~~l~lp~--~l~~I~~~-aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~ 373 (401)
T 4fdw_A 308 PE--SIRILGQG-------LLGGNRKVTQLTIPA--NVTQINFS-AFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDIT 373 (401)
T ss_dssp CT--TCCEECTT-------TTTTCCSCCEEEECT--TCCEECTT-SSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCC
T ss_pred CC--ceEEEhhh-------hhcCCCCccEEEECc--cccEEcHH-hCCCC-CCCEEEEcCC-CCcccccccccCCCCCcc
Confidence 53 24333211 112256777777743 57777653 23356 7888888765 33333322 3333 3566
Q ss_pred eeec
Q 014145 387 KVKP 390 (430)
Q Consensus 387 ~l~l 390 (430)
.|.+
T Consensus 374 ~l~v 377 (401)
T 4fdw_A 374 VIRV 377 (401)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6666
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.9e-07 Score=78.01 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=54.3
Q ss_pred CCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-CCcccCCCCCEEEEccCCCcccccCchhh
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV-TPSWHLENLATLEVSKCHGLINVLTLSTS 297 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 297 (430)
+..+++|+.|+++++ .++.+....+ ..+++|++|+++++. +..++ ..+..+++|+.|+++++ .+..++.. .+
T Consensus 50 ~~~l~~L~~L~Ls~N-~i~~i~~~~f---~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~ 122 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNN-RISTLSNQSF---SNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN-DISVVPEG-AF 122 (193)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS-CCCBCCTT-TT
T ss_pred hhcccCCCEEECCCC-cCCEeCHhHc---cCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC-CCCeeChh-hh
Confidence 455677777777774 5666655555 667777777777753 44443 34556777777777774 45555442 24
Q ss_pred ccccccceEeecccc
Q 014145 298 ESLVNLGRMKIADCK 312 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~ 312 (430)
..+++|+.|++++++
T Consensus 123 ~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 123 NDLSALSHLAIGANP 137 (193)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcCccccEEEeCCCC
Confidence 556777777776543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.1e-07 Score=75.79 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=45.0
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++|+.|+++++. +..+++ ..++.+++|++|++++| .+..+ +...+..+++|++|+++++ .+..++.
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~---------~~~~~~~l~~L~~L~l~~N-~l~~~~~ 93 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPH-GVFDKLTQLTKLSLSQN-QIQSL---------PDGVFDKLTKLTILYLHEN-KLQSLPN 93 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSS-CCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEeCCCc-ccEeCH-HHhcCcccccEEECCCC-cceEe---------ChhHccCCCccCEEECCCC-CccccCH
Confidence 4566666666652 444322 22455666777777666 34444 3343456666677766664 3443432
Q ss_pred CccccccCCCccEEEeccC
Q 014145 158 FTENIIEMPELRYLAIENC 176 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c 176 (430)
. ....+++|++|++.++
T Consensus 94 ~--~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 94 G--VFDKLTQLKELALDTN 110 (177)
T ss_dssp T--TTTTCTTCCEEECCSS
T ss_pred H--HhhCCcccCEEECcCC
Confidence 1 1344556666666555
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-06 Score=74.30 Aligned_cols=86 Identities=24% Similarity=0.177 Sum_probs=52.9
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSE 298 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~ 298 (430)
..+++|++|+++++ .++.+....+ ..+++|+.|+++++ .++.++.. +..+++|+.|+++++ .+..++.. .+.
T Consensus 49 ~~l~~L~~L~l~~n-~l~~~~~~~~---~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~ 121 (177)
T 2o6r_A 49 DKLTQLTKLSLSQN-QIQSLPDGVF---DKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDG-IFD 121 (177)
T ss_dssp TTCTTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT-TTT
T ss_pred cCcccccEEECCCC-cceEeChhHc---cCCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHH-Hhc
Confidence 45667777777764 5565554444 56677777777775 34444433 456677777777765 45555442 235
Q ss_pred cccccceEeecccc
Q 014145 299 SLVNLGRMKIADCK 312 (430)
Q Consensus 299 ~l~~L~~L~l~~c~ 312 (430)
.+++|++|++++++
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 56777777776654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-05 Score=75.64 Aligned_cols=211 Identities=12% Similarity=0.130 Sum_probs=124.5
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.+|+.+.+... ++.+.... +. . .+|+.+.+.. ++..+.. +.+.+|.+|+.+++.++ .+..+
T Consensus 135 ~~L~~i~l~~~--i~~I~~~a-F~--~-~~L~~i~lp~--~l~~I~~-~aF~~c~~L~~l~l~~n-~l~~I--------- 195 (401)
T 4fdw_A 135 SQIAKVVLNEG--LKSIGDMA-FF--N-STVQEIVFPS--TLEQLKE-DIFYYCYNLKKADLSKT-KITKL--------- 195 (401)
T ss_dssp CCCSEEECCTT--CCEECTTT-TT--T-CCCCEEECCT--TCCEECS-STTTTCTTCCEEECTTS-CCSEE---------
T ss_pred CCccEEEeCCC--ccEECHHh-cC--C-CCceEEEeCC--CccEehH-HHhhCcccCCeeecCCC-cceEe---------
Confidence 46777776543 55554443 21 1 4688888875 5555433 33777888888888776 56666
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCcccCCCc
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEEN 205 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~ 205 (430)
+.+.+. ..+|+.+.+.. .+..+.. .....+++|+.+.+.+ .++.++ ..+|+.+.+..+ +..+..
T Consensus 196 ~~~aF~-~~~L~~l~lp~--~l~~I~~--~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~~-i~~I~~--- 264 (401)
T 4fdw_A 196 PASTFV-YAGIEEVLLPV--TLKEIGS--QAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPNG-VTNIAS--- 264 (401)
T ss_dssp CTTTTT-TCCCSEEECCT--TCCEECT--TTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEETT-CCEECT---
T ss_pred chhhEe-ecccCEEEeCC--chheehh--hHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCCC-ccEECh---
Confidence 455544 47788887764 3555532 2255677788877764 244433 245666666332 222220
Q ss_pred eeeecCcccccccCCCCCCCCEEecccCC----CceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEE
Q 014145 206 FFLTDQIQPLFDEKVAFPQLRYLELSRLH----KVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATL 280 (430)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L 280 (430)
.....+++|+++.+.+.. .+..+....| ..+++|+.+.+.+ .++.+.. .+..+++|+.+
T Consensus 265 -----------~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF---~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 265 -----------RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL---EGCPKLARFEIPE--SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp -----------TTTTTCTTCCEEEEESSCCCCCTTCEECTTTT---TTCTTCCEECCCT--TCCEECTTTTTTCCSCCEE
T ss_pred -----------hHhhCCCCCCEEEeCCccccCCcccEECHHHh---hCCccCCeEEeCC--ceEEEhhhhhcCCCCccEE
Confidence 124567778888776531 1224555555 6777888887764 3555543 34466778888
Q ss_pred EEccCCCcccccCchhhccccccceEeeccc
Q 014145 281 EVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 281 ~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
.+.. +++.+...+ +..+ +|+.+++...
T Consensus 329 ~lp~--~l~~I~~~a-F~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 329 TIPA--NVTQINFSA-FNNT-GIKEVKVEGT 355 (401)
T ss_dssp EECT--TCCEECTTS-SSSS-CCCEEEECCS
T ss_pred EECc--cccEEcHHh-CCCC-CCCEEEEcCC
Confidence 7754 355555443 3455 7888887654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-07 Score=96.94 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=81.4
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+...+.....+++|+.|+|+++. +..++... ..+++|++|+++++ .+.. .|.. +..+++|++|++++|. +.
T Consensus 213 ~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~----~~l~~L~~L~Ls~N-~l~~-lp~~-~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 213 MVMPKDSKYDDQLWHALDLSNLQ-IFNISANI----FKYDFLTRLYLNGN-SLTE-LPAE-IKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp ---------CCCCCCEEECTTSC-CSCCCGGG----GGCCSCSCCBCTTS-CCSC-CCGG-GGGGTTCCEEECTTSC-CS
T ss_pred eecChhhhccCCCCcEEECCCCC-CCCCChhh----cCCCCCCEEEeeCC-cCcc-cChh-hhCCCCCCEEeCcCCc-CC
Confidence 33345556678889999998877 66555444 56889999999987 4554 3443 6789999999999984 55
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ |..+ ..+++|++|+++++ .+..+|.. +..+++|++|++.++.
T Consensus 284 ~l---------p~~~-~~l~~L~~L~L~~N-~l~~lp~~---~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 284 SL---------PAEL-GSCFQLKYFYFFDN-MVTTLPWE---FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SC---------CSSG-GGGTTCSEEECCSS-CCCCCCSS---TTSCTTCCCEECTTSC
T ss_pred cc---------Chhh-cCCCCCCEEECCCC-CCCccChh---hhcCCCccEEeCCCCc
Confidence 55 5665 78899999999886 56677665 7788899999998876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.4e-07 Score=91.05 Aligned_cols=186 Identities=14% Similarity=0.086 Sum_probs=112.0
Q ss_pred chhhhhhhcccCCCCcceeecccccCCeee--------ccCCCCC--CCCCCCcceEE-EeCCCCCCccCch----hHHH
Q 014145 38 STIQKCYEEMIGFRDIKYLQLGHFPRLQEI--------WHGQALP--VSFFNNLRHLV-VDDCTNMLSAIPA----NLIR 102 (430)
Q Consensus 38 ~~~~~l~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~~~--~~~l~~L~~L~-l~~c~~l~~~~~~----~~~~ 102 (430)
+.+..+|.++..+++|+.|+++++..+... ..+. .| .+.+++|+.|+ ++. ..+..+... ..+.
T Consensus 359 n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-~~~~l~~l~~L~~L~~l~~-n~~~~L~~l~l~~n~i~ 436 (567)
T 1dce_A 359 EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKAVDPMRA-AYLDDLRSKFLLENSVL 436 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-CHHHHHHHHhcccCcchhh-cccchhhhhhhhccccc
Confidence 456788888888899999887654210000 0000 01 13467777777 332 112111110 0011
Q ss_pred h--cCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcc
Q 014145 103 C--LNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDME 180 (430)
Q Consensus 103 ~--l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 180 (430)
. ...|++|++++| .+..+ |. +..+++|+.|+++++ .+..+|.. +..+++|++|+++++. ++
T Consensus 437 ~l~~~~L~~L~Ls~n-~l~~l---------p~--~~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~Ls~N~-l~ 499 (567)
T 1dce_A 437 KMEYADVRVLHLAHK-DLTVL---------CH--LEQLLLVTHLDLSHN-RLRALPPA---LAALRCLEVLQASDNA-LE 499 (567)
T ss_dssp HHHHTTCSEEECTTS-CCSSC---------CC--GGGGTTCCEEECCSS-CCCCCCGG---GGGCTTCCEEECCSSC-CC
T ss_pred ccCccCceEEEecCC-CCCCC---------cC--ccccccCcEeecCcc-cccccchh---hhcCCCCCEEECCCCC-CC
Confidence 1 236999999998 56655 44 488899999999986 56677654 7889999999999875 44
Q ss_pred cccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeec-cCCchhhhhcccccEEEee
Q 014145 181 TFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLW-KENDESNKAFANLIRLKIS 259 (430)
Q Consensus 181 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~~~l~~L~~L~l~ 259 (430)
.++ .++.+++|+.|+++++ .++.+. +..+ ..+++|+.|+++
T Consensus 500 ~lp----------------------------------~l~~l~~L~~L~Ls~N-~l~~~~~p~~l---~~l~~L~~L~L~ 541 (567)
T 1dce_A 500 NVD----------------------------------GVANLPRLQELLLCNN-RLQQSAAIQPL---VSCPRLVLLNLQ 541 (567)
T ss_dssp CCG----------------------------------GGTTCSSCCEEECCSS-CCCSSSTTGGG---GGCTTCCEEECT
T ss_pred CCc----------------------------------ccCCCCCCcEEECCCC-CCCCCCCcHHH---hcCCCCCEEEec
Confidence 332 2356677777777764 555543 3333 667777777777
Q ss_pred cCCCcccccCCc----ccCCCCCEEE
Q 014145 260 ECSKLQKLVTPS----WHLENLATLE 281 (430)
Q Consensus 260 ~c~~l~~l~~~l----~~l~~L~~L~ 281 (430)
+++ +..+|... ..+++|+.|+
T Consensus 542 ~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 542 GNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCc-CCCCccHHHHHHHHCcccCccC
Confidence 753 44443322 2367777764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.9e-08 Score=100.36 Aligned_cols=107 Identities=14% Similarity=0.058 Sum_probs=66.9
Q ss_pred HHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCc
Q 014145 100 LIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDM 179 (430)
Q Consensus 100 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l 179 (430)
.+..+++|+.|++++|. +..+ |..+ ..+++|++|+++++ .+..+|.. +..+++|++|++++|. +
T Consensus 219 ~~~~l~~L~~L~Ls~n~-l~~l---------~~~~-~~l~~L~~L~Ls~N-~l~~lp~~---~~~l~~L~~L~Ls~N~-l 282 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQ-IFNI---------SANI-FKYDFLTRLYLNGN-SLTELPAE---IKNLSNLRVLDLSHNR-L 282 (727)
T ss_dssp ---CCCCCCEEECTTSC-CSCC---------CGGG-GGCCSCSCCBCTTS-CCSCCCGG---GGGGTTCCEEECTTSC-C
T ss_pred hhccCCCCcEEECCCCC-CCCC---------Chhh-cCCCCCCEEEeeCC-cCcccChh---hhCCCCCCEEeCcCCc-C
Confidence 35667777777777774 4444 4444 46777777777775 44455543 6677777777777765 5
Q ss_pred cccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCcee
Q 014145 180 ETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQH 238 (430)
Q Consensus 180 ~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 238 (430)
+.+| ..+|+.|++++|.+..+. ..++.+++|+.|+++++ .+..
T Consensus 283 ~~lp~~~~~l~~L~~L~L~~N~l~~lp---------------~~~~~l~~L~~L~L~~N-~l~~ 330 (727)
T 4b8c_D 283 TSLPAELGSCFQLKYFYFFDNMVTTLP---------------WEFGNLCNLQFLGVEGN-PLEK 330 (727)
T ss_dssp SSCCSSGGGGTTCSEEECCSSCCCCCC---------------SSTTSCTTCCCEECTTS-CCCS
T ss_pred CccChhhcCCCCCCEEECCCCCCCccC---------------hhhhcCCCccEEeCCCC-ccCC
Confidence 5444 346677777777665544 23566778888888875 4443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.4e-07 Score=76.84 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=8.8
Q ss_pred cCCCCCEEEEccCCCccc
Q 014145 273 HLENLATLEVSKCHGLIN 290 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~ 290 (430)
.+++|++|++++|..+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp TCSCCCEEEEESCTTCCH
T ss_pred CCCCCCEEEeCCCCccCH
Confidence 444555555555544444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-06 Score=72.81 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=57.4
Q ss_pred cceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCcc
Q 014145 53 IKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKE 132 (430)
Q Consensus 53 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 132 (430)
.+.+++++.. ++.++ ....++|+.|+++++ .+..+.+. .+.++++|++|++++| .+..+ +.
T Consensus 11 ~~~l~~s~n~-l~~ip------~~~~~~l~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N-~l~~l---------~~ 71 (170)
T 3g39_A 11 GTTVDCSGKS-LASVP------TGIPTTTQVLYLYDN-QITKLEPG-VFDRLTQLTRLDLDNN-QLTVL---------PA 71 (170)
T ss_dssp TTEEECTTSC-CSSCC------SCCCTTCSEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSS-CCCCC---------CT
T ss_pred CCEEEeCCCC-cCccC------ccCCCCCcEEEcCCC-cCCccChh-hhcCcccCCEEECCCC-CcCcc---------Ch
Confidence 3456665544 44422 222466777777765 34443332 2556777777777776 35554 44
Q ss_pred CcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 133 HIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 133 ~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
+.+..+++|++|+++++ .+..++.. .+..+++|++|++.+++
T Consensus 72 ~~f~~l~~L~~L~L~~N-~l~~~~~~--~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 72 GVFDKLTQLTQLSLNDN-QLKSIPRG--AFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCTTCCEEECCSSC
T ss_pred hhccCCCCCCEEECCCC-ccCEeCHH--HhcCCCCCCEEEeCCCC
Confidence 44566677777777764 44444332 14456666666666654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.8e-06 Score=72.34 Aligned_cols=85 Identities=19% Similarity=0.193 Sum_probs=45.4
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.++|+.|+++++ .+..+++. .+.++++|++|++++| .+..+ |.+++..+++|++|+++++ .+..++.
T Consensus 32 ~~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~i---------~~~~~~~l~~L~~L~L~~N-~l~~l~~ 98 (174)
T 2r9u_A 32 PTDKQRLWLNNN-QITKLEPG-VFDHLVNLQQLYFNSN-KLTAI---------PTGVFDKLTQLTQLDLNDN-HLKSIPR 98 (174)
T ss_dssp CTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCCCC---------CTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CCCCcEEEeCCC-CccccCHH-HhcCCcCCCEEECCCC-CCCcc---------ChhHhCCcchhhEEECCCC-ccceeCH
Confidence 356666666665 34443332 2555666666666666 34444 4444456666666666653 4444432
Q ss_pred CccccccCCCccEEEeccCC
Q 014145 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~ 177 (430)
. .+..+++|++|.+.+++
T Consensus 99 ~--~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 99 G--AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp T--TTTTCTTCSEEECCSSC
T ss_pred H--HhccccCCCEEEeCCCC
Confidence 1 13455666666665554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.24 E-value=9.6e-05 Score=71.41 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=137.0
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEec------
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVL------ 122 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~------ 122 (430)
.+.+|+.+.+.. .++.+.... ...+++|+.+++.. ++..+ +...+.++.+|+.+.+... +..+.
T Consensus 69 ~c~~L~~i~lp~--~i~~I~~~a---F~~c~~L~~i~lp~--~l~~I-~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~ 138 (394)
T 4fs7_A 69 GCRKVTEIKIPS--TVREIGEFA---FENCSKLEIINIPD--SVKMI-GRCTFSGCYALKSILLPLM--LKSIGVEAFKG 138 (394)
T ss_dssp TCTTEEEEECCT--TCCEECTTT---TTTCTTCCEECCCT--TCCEE-CTTTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred CCCCceEEEeCC--CccCcchhH---hhCCCCCcEEEeCC--CceEc-cchhhcccccchhhcccCc--eeeecceeeec
Confidence 456677777752 255443332 24567788887765 34443 3333566777776665432 22211
Q ss_pred -------ccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceE
Q 014145 123 -------HLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVH 189 (430)
Q Consensus 123 -------~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~ 189 (430)
............+..+++|+.+.+.+ .+..+.. .....+++|+.+.+... ++.+. +..|+.
T Consensus 139 ~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~--~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 139 CDFKEITIPEGVTVIGDEAFATCESLEYVSLPD--SMETLHN--GLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLEN 212 (394)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECT--TTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCB
T ss_pred ccccccccCccccccchhhhcccCCCcEEecCC--ccceecc--ccccCCCCceEEEcCCC--ceEeCchhhccccccce
Confidence 11111112234457778888888864 2333422 22456777877777532 33222 234444
Q ss_pred EEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc-
Q 014145 190 VTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV- 268 (430)
Q Consensus 190 L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~- 268 (430)
+.+..+... +. ........|+++.+.. .++.+....+ ..+..|+.+.+... ...+.
T Consensus 213 i~~~~~~~~-i~---------------~~~~~~~~l~~i~ip~--~~~~i~~~~f---~~~~~l~~~~~~~~--~~~i~~ 269 (394)
T 4fs7_A 213 MEFPNSLYY-LG---------------DFALSKTGVKNIIIPD--SFTELGKSVF---YGCTDLESISIQNN--KLRIGG 269 (394)
T ss_dssp CCCCTTCCE-EC---------------TTTTTTCCCCEEEECT--TCCEECSSTT---TTCSSCCEEEECCT--TCEECS
T ss_pred eecCCCceE-ee---------------hhhcccCCCceEEECC--Cceecccccc---cccccceeEEcCCC--cceeec
Confidence 444332210 00 1122345677776653 3455544444 56667777766542 22222
Q ss_pred CCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCce
Q 014145 269 TPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTS 348 (430)
Q Consensus 269 ~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 348 (430)
.....+..++.+..... .++.. .+..+.+|+.+.+.+ .++.+... ....+.+|+++++.+ +++.
T Consensus 270 ~~F~~~~~l~~~~~~~~----~i~~~-~F~~~~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp~--~v~~ 333 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSV----IVPEK-TFYGCSSLTEVKLLD--SVKFIGEE-------AFESCTSLVSIDLPY--LVEE 333 (394)
T ss_dssp CTTTTCTTCCEEEECSS----EECTT-TTTTCTTCCEEEECT--TCCEECTT-------TTTTCTTCCEECCCT--TCCE
T ss_pred cccccccccceeccCce----eeccc-ccccccccccccccc--ccceechh-------hhcCCCCCCEEEeCC--cccE
Confidence 22334555655555432 11111 234456666666642 12222100 111145566666542 3555
Q ss_pred eccCCcccCCCCccEEeeccCCCCcccCC-CCcCCCCceeeec
Q 014145 349 FCLGNYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKP 390 (430)
Q Consensus 349 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~l 390 (430)
++.+ .+..|.+|+++.+.. .++.+.. .+..+++|+++.+
T Consensus 334 I~~~-aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 334 IGKR-SFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp ECTT-TTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEE
T ss_pred EhHH-hccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEE
Confidence 5442 233566677776643 2544443 2455667777766
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=74.33 Aligned_cols=94 Identities=11% Similarity=0.144 Sum_probs=68.6
Q ss_pred CCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCc
Q 014145 275 ENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNY 354 (430)
Q Consensus 275 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~ 354 (430)
..|++|++++|. +++.... .+..+++|+.|++++|..+.+....... ......++|++|++++|+++++-....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~---~~~~~~~~L~~L~Ls~C~~ITD~Gl~~- 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLS---QLENLQKSMLEMEIISCGNVTDKGIIA- 134 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHH---TCHHHHHHCCEEEEESCTTCCHHHHHH-
T ss_pred ceEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHH---hcccccCCCCEEEcCCCCcCCHHHHHH-
Confidence 478999999986 6665433 2468999999999999987764322100 000013579999999999999866532
Q ss_pred ccCCCCccEEeeccCCCCcc
Q 014145 355 ALEFPSLEHVVVRQCPTMKI 374 (430)
Q Consensus 355 ~~~~~~L~~L~l~~c~~l~~ 374 (430)
...+++|++|++++|+.++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 33589999999999999875
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.19 E-value=3e-08 Score=86.55 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=52.8
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
++.++..+..+++|++|+++++. +..++ .. ..+++|+.|++++| .+..++. .+..+++|++|++++| .+.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~----~~l~~L~~L~l~~n-~l~~l~~--~~~~~~~L~~L~L~~N-~l~ 106 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNN-IEKIS-SL----SGMENLRILSLGRN-LIKKIEN--LDAVADTLEELWISYN-QIA 106 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEE-ESCCC-CH----HHHTTCCEEEEEEE-EECSCSS--HHHHHHHCSEEEEEEE-ECC
T ss_pred HhhhhHHHhcCCCCCEEECCCCC-Ccccc-cc----ccCCCCCEEECCCC-Ccccccc--hhhcCCcCCEEECcCC-cCC
Confidence 33444444555566666665554 44322 11 34556666666655 2333222 2344555666666655 233
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
.+ | + +..+++|++|+++++ .+..++... .+..+++|++|++.+|+
T Consensus 107 ~l---------~-~-~~~l~~L~~L~l~~N-~i~~~~~~~-~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 107 SL---------S-G-IEKLVNLRVLYMSNN-KITNWGEID-KLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CH---------H-H-HHHHHHSSEEEESEE-ECCCHHHHH-HHTTTTTCSEEEECSCH
T ss_pred cC---------C-c-cccCCCCCEEECCCC-cCCchhHHH-HHhcCCCCCEEEecCCc
Confidence 33 1 1 244555666665553 232221100 13445555555555543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.1e-08 Score=85.69 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=7.3
Q ss_pred HHhcCCCCEEEEecC
Q 014145 101 IRCLNNLRWLEVRNC 115 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~ 115 (430)
+..+++|++|++++|
T Consensus 44 ~~~l~~L~~L~ls~n 58 (198)
T 1ds9_A 44 LSTLKACKHLALSTN 58 (198)
T ss_dssp HHHTTTCSEEECSEE
T ss_pred HhcCCCCCEEECCCC
Confidence 344455555555444
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0002 Score=69.08 Aligned_cols=59 Identities=5% Similarity=-0.035 Sum_probs=41.0
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCC
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMD 148 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~ 148 (430)
..+.+|+.+.+.. ++..+ ....+.+|.+|+.+++..+ +..+ +...+..+++|+.+.+..
T Consensus 68 ~~c~~L~~i~lp~--~i~~I-~~~aF~~c~~L~~i~lp~~--l~~I---------~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 68 QGCRKVTEIKIPS--TVREI-GEFAFENCSKLEIINIPDS--VKMI---------GRCTFSGCYALKSILLPL 126 (394)
T ss_dssp TTCTTEEEEECCT--TCCEE-CTTTTTTCTTCCEECCCTT--CCEE---------CTTTTTTCTTCCCCCCCT
T ss_pred hCCCCceEEEeCC--CccCc-chhHhhCCCCCcEEEeCCC--ceEc---------cchhhcccccchhhcccC
Confidence 4567888888875 56664 3344788999999999753 6666 445567777777766653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.06 E-value=2e-05 Score=66.63 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=44.9
Q ss_pred CCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhccc
Q 014145 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESL 300 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l 300 (430)
.++|+.|+++++ .++.+.+..+ ..+++|+.|+++++ .+..++.. +..+++|+.|+++++ .+..++.. .+..+
T Consensus 29 ~~~l~~L~L~~N-~i~~~~~~~~---~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l 101 (170)
T 3g39_A 29 PTTTQVLYLYDN-QITKLEPGVF---DRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRG-AFDNL 101 (170)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTT---TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTC
T ss_pred CCCCcEEEcCCC-cCCccChhhh---cCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHH-HhcCC
Confidence 356666666653 4555544444 55666666666664 34444433 345666666666654 34444432 24455
Q ss_pred cccceEeeccc
Q 014145 301 VNLGRMKIADC 311 (430)
Q Consensus 301 ~~L~~L~l~~c 311 (430)
++|++|+++++
T Consensus 102 ~~L~~L~L~~N 112 (170)
T 3g39_A 102 KSLTHIWLLNN 112 (170)
T ss_dssp TTCCEEECCSS
T ss_pred CCCCEEEeCCC
Confidence 66666666554
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.00 E-value=3.3e-05 Score=65.63 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=45.9
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCC-cccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTP-SWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
++|+.|+++++ .++.+.+..+ ..+++|+.|+++++ .+..+|.. +..+++|+.|+++++ .+..++.. .+..++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~---~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVF---DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRG-AFDNLK 105 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTT---TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred CCCcEEEeCCC-CccccCHHHh---cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHH-Hhcccc
Confidence 56666666663 4555544444 55666666666664 44555543 245666666666664 34444432 244566
Q ss_pred ccceEeeccc
Q 014145 302 NLGRMKIADC 311 (430)
Q Consensus 302 ~L~~L~l~~c 311 (430)
+|++|+++++
T Consensus 106 ~L~~L~L~~N 115 (174)
T 2r9u_A 106 SLTHIYLYNN 115 (174)
T ss_dssp TCSEEECCSS
T ss_pred CCCEEEeCCC
Confidence 6666666654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=74.75 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=66.9
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..+|. +..+++|+.|+|++...++.+.... ...+++|+.|+++++ .+..+++. .+.++++|++|+|++| .+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~---~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l 92 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-AL 92 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhH---hccccCCCEEECCCC-ccceeCHH-HhcCCcCCCEEeCCCC-cc
Confidence 3666777 7788889999998644477755432 156889999999987 46665544 3678899999999988 46
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCc
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
..+ |.+++..++ |+.|++.++
T Consensus 93 ~~~---------~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 93 ESL---------SWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCC---------CSTTTCSCC-CCEEECCSS
T ss_pred cee---------CHHHcccCC-ceEEEeeCC
Confidence 665 455545555 888888774
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.6e-05 Score=75.93 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=43.8
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccc-----ccCCcccCCCCCEEEEccCCCccc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK-----LVTPSWHLENLATLEVSKCHGLIN 290 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~l~~l~~L~~L~l~~c~~l~~ 290 (430)
..+|+|+.|.+.+|. +.......+.....+++|++|+++.+ .+.. ++..+..+++|+.|+++.|. +.+
T Consensus 249 ~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d 321 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSD 321 (362)
T ss_dssp TTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCH
T ss_pred CCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCCc-CCH
Confidence 458899999998864 32211111111135789999999875 4442 44555678999999999874 443
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.6e-05 Score=72.92 Aligned_cols=102 Identities=21% Similarity=0.179 Sum_probs=65.1
Q ss_pred eecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcC
Q 014145 56 LQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIG 135 (430)
Q Consensus 56 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~ 135 (430)
++.++..++..++. . ..+++|+.|+++++..+..+++. .+.++++|++|++++| .+..+ +...+
T Consensus 13 v~~~~~n~l~~ip~-l----~~~~~L~~L~l~~~n~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~---------~~~~~ 76 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-L----PGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKS-GLRFV---------APDAF 76 (347)
T ss_dssp EECCSSCCCTTTTT-S----CSCSCCSEEECCSCSSCCEECGG-GSCSCCCCSEEECCSS-CCCEE---------CTTGG
T ss_pred EEcCCCCCCCccCC-C----CCCCCeeEEEccCCCCCCCcChh-HhccccCCCEEECCCC-cccee---------CHHHh
Confidence 45544423555443 3 45678888888864456665443 3677888888888888 57666 45555
Q ss_pred CcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 136 PLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 136 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
..+++|+.|+|+++ .+..++.. ......|+.|.+.+++
T Consensus 77 ~~l~~L~~L~l~~N-~l~~~~~~---~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 77 HFTPRLSRLNLSFN-ALESLSWK---TVQGLSLQELVLSGNP 114 (347)
T ss_dssp GSCSCCCEEECCSS-CCSCCCST---TTCSCCCCEEECCSSC
T ss_pred cCCcCCCEEeCCCC-ccceeCHH---HcccCCceEEEeeCCC
Confidence 77888888888874 56666543 2222237777777655
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=7.7e-07 Score=85.59 Aligned_cols=43 Identities=12% Similarity=-0.086 Sum_probs=25.8
Q ss_pred CCCCCCCEEecccCCCceeeccCCch-hhhhcccccEEEeecCCC
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSK 263 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~~ 263 (430)
...++|++|++++| .+++.....+. .....++|++|+++++..
T Consensus 208 ~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 208 DRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred hcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 34567888888875 55554332221 113457888888888653
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.9e-05 Score=75.31 Aligned_cols=15 Identities=7% Similarity=-0.122 Sum_probs=10.8
Q ss_pred HHhcCCCCEEEEecC
Q 014145 101 IRCLNNLRWLEVRNC 115 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~ 115 (430)
...+++|+.|.+.+.
T Consensus 135 ~~~l~~L~~L~l~~~ 149 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDI 149 (362)
T ss_dssp HHHHTTCSEEEECCC
T ss_pred hhhcchhhheeecCc
Confidence 446788888888653
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.012 Score=56.43 Aligned_cols=103 Identities=11% Similarity=0.118 Sum_probs=56.0
Q ss_pred cCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccC
Q 014145 273 HLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLG 352 (430)
Q Consensus 273 ~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 352 (430)
.+..|+.+.+.. .+..+... .+..++.|+.+.+.. .+..+... ....+.+|+++.+-+ +++.+...
T Consensus 263 ~c~~L~~i~lp~--~~~~I~~~-aF~~c~~L~~i~l~~--~i~~I~~~-------aF~~c~~L~~i~lp~--~v~~I~~~ 328 (394)
T 4gt6_A 263 SCAYLASVKMPD--SVVSIGTG-AFMNCPALQDIEFSS--RITELPES-------VFAGCISLKSIDIPE--GITQILDD 328 (394)
T ss_dssp TCSSCCEEECCT--TCCEECTT-TTTTCTTCCEEECCT--TCCEECTT-------TTTTCTTCCEEECCT--TCCEECTT
T ss_pred ecccccEEeccc--ccceecCc-ccccccccccccCCC--cccccCce-------eecCCCCcCEEEeCC--cccEehHh
Confidence 445566665542 22333222 234566677766642 22222110 111256777777753 46666542
Q ss_pred CcccCCCCccEEeeccCCCCcccCC-CCcCCCCceeeeccc
Q 014145 353 NYALEFPSLEHVVVRQCPTMKIFSQ-GVVDAPKLNKVKPTE 392 (430)
Q Consensus 353 ~~~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~l~l~~ 392 (430)
.+..|.+|+++.+.. .++.+.. .+..+.+|+.+++.+
T Consensus 329 -aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 329 -AFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp -TTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred -HhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 234678888888853 4555543 355778888888855
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=6.9e-06 Score=78.91 Aligned_cols=70 Identities=13% Similarity=-0.027 Sum_probs=43.9
Q ss_pred CCCCCCCEEecccCCCceeeccCCc-hhhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccCCCcccc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKEND-ESNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCHGLINV 291 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~~l~~l 291 (430)
...++|++|+++++ .+.+.....+ ......++|+.|++++|..-. .+...+...++|++|++++|. +.+.
T Consensus 180 ~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 180 AGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp HTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred hcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence 45678999999886 4544221111 011456789999999985432 233334467889999999874 5443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.019 Score=55.13 Aligned_cols=142 Identities=13% Similarity=0.148 Sum_probs=79.5
Q ss_pred CCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhccccc
Q 014145 224 QLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVN 302 (430)
Q Consensus 224 ~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~ 302 (430)
.+..+.+. ..++.+....+ ..+.+|+.+.+.. ....+.. ....+++|+.+.+. ..++.++..+ +..+.+
T Consensus 243 ~~~~~~ip--~~v~~i~~~aF---~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~a-F~~c~~ 312 (394)
T 4gt6_A 243 EDPAFKIP--NGVARIETHAF---DSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFS--SRITELPESV-FAGCIS 312 (394)
T ss_dssp CCSEEECC--TTEEEECTTTT---TTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECC--TTCCEECTTT-TTTCTT
T ss_pred ccceEEcC--CcceEccccee---eecccccEEeccc--ccceecCcccccccccccccCC--CcccccCcee-ecCCCC
Confidence 34444443 24566555555 7778888888754 2333332 34577888888886 3566665543 567888
Q ss_pred cceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCC
Q 014145 303 LGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDA 382 (430)
Q Consensus 303 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 382 (430)
|+.+.+.+ .++.+... ....+.+|+++.+-+ +++.+... .+..|++|+.+.+.+... .. ......
T Consensus 313 L~~i~lp~--~v~~I~~~-------aF~~C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~~~~--~~-~~~~~~ 377 (394)
T 4gt6_A 313 LKSIDIPE--GITQILDD-------AFAGCEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSGSRS--QW-NAISTD 377 (394)
T ss_dssp CCEEECCT--TCCEECTT-------TTTTCTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESSCHH--HH-HTCBCC
T ss_pred cCEEEeCC--cccEehHh-------HhhCCCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECCcee--eh-hhhhcc
Confidence 99988853 23333210 112267788887742 46666542 234688899988876321 11 123345
Q ss_pred CCceeeec
Q 014145 383 PKLNKVKP 390 (430)
Q Consensus 383 ~~L~~l~l 390 (430)
.+|+.+.+
T Consensus 378 ~~L~~i~i 385 (394)
T 4gt6_A 378 SGLQNLPV 385 (394)
T ss_dssp CCC-----
T ss_pred CCCCEEEe
Confidence 66777766
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.12 Score=48.89 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=34.7
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
..|+.+.+.. .++.+....+ ..+..|+.+.+-. .++.+.. ....+.+|+.+.+.. .++.++.. .+..+.
T Consensus 217 ~~l~~i~~~~--~~~~i~~~~f---~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~-aF~~c~ 286 (379)
T 4h09_A 217 KNLKKITITS--GVTTLGDGAF---YGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYL-LCSGCS 286 (379)
T ss_dssp SSCSEEECCT--TCCEECTTTT---TTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTT-TTTTCT
T ss_pred cccceeeecc--ceeEEccccc---cCCccceEEEcCC--CccEeCccccceeehhccccccc--cceecccc-cccccc
Confidence 3444444432 2344433333 4455555555543 2333322 233455566665542 34444332 234555
Q ss_pred ccceEeec
Q 014145 302 NLGRMKIA 309 (430)
Q Consensus 302 ~L~~L~l~ 309 (430)
+|+.+.+.
T Consensus 287 ~L~~i~l~ 294 (379)
T 4h09_A 287 NLTKVVMD 294 (379)
T ss_dssp TCCEEEEC
T ss_pred cccccccc
Confidence 66666664
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.47 Score=44.82 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=25.7
Q ss_pred hhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhccccccceEee
Q 014145 248 KAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKI 308 (430)
Q Consensus 248 ~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l 308 (430)
..+.+|+.+.+.. .+..+.. ....+..|+.+.+.. .++.+... .+..+..|+.+.+
T Consensus 214 ~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~-aF~~~~~l~~i~l 270 (379)
T 4h09_A 214 SYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPK--NVTSIGSF-LLQNCTALKTLNF 270 (379)
T ss_dssp TTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECT--TCCEECTT-TTTTCTTCCEEEE
T ss_pred ccccccceeeecc--ceeEEccccccCCccceEEEcCC--CccEeCcc-ccceeehhccccc
Confidence 4455565555543 2333322 223455666666643 24443332 1344555666655
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.013 Score=52.88 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=20.8
Q ss_pred CCCCcceEEEeCCCCCCccCch-hHHHhcCCCCEEEEecC
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPA-NLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~l~~L~~L~l~~~ 115 (430)
.+++|+.|+++++ .+..+.+. ..+..+++|+.|++++|
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC
Confidence 3566666666664 34432221 23456666666666666
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0071 Score=51.48 Aligned_cols=91 Identities=13% Similarity=-0.011 Sum_probs=44.3
Q ss_pred CCCCCCCEEecccCCCceeeccCCc-hhhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEE--ccCCCccccc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKEND-ESNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEV--SKCHGLINVL 292 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l--~~c~~l~~l~ 292 (430)
...++|++|+++++ .+.+.....+ ......++|++|+++++..-. .+...+...+.|++|++ +++ .+.+-.
T Consensus 62 ~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g 139 (185)
T 1io0_A 62 KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNV 139 (185)
T ss_dssp TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHH
T ss_pred HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHH
Confidence 34566777777765 3333111111 011334567777777654322 13334555567777777 433 344322
Q ss_pred Cch---hhccccccceEeecccc
Q 014145 293 TLS---TSESLVNLGRMKIADCK 312 (430)
Q Consensus 293 ~~~---~~~~l~~L~~L~l~~c~ 312 (430)
... .+...+.|++|++++|.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCcCEEeccCCC
Confidence 111 12334567777776653
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0052 Score=52.35 Aligned_cols=64 Identities=13% Similarity=-0.017 Sum_probs=31.8
Q ss_pred CCCCCEEecccCCCceeeccCCc-hhhhhcccccEEEe--ecCCCcc----cccCCcccCCCCCEEEEccCC
Q 014145 222 FPQLRYLELSRLHKVQHLWKEND-ESNKAFANLIRLKI--SECSKLQ----KLVTPSWHLENLATLEVSKCH 286 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l--~~c~~l~----~l~~~l~~l~~L~~L~l~~c~ 286 (430)
.+.|++|+++++ .+.+.....+ ......++|++|++ +++..-. .+...+...+.|++|++++|.
T Consensus 92 n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 456677777664 3333111100 01144456777777 4443211 122334455778888887763
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.033 Score=50.31 Aligned_cols=12 Identities=33% Similarity=0.376 Sum_probs=5.9
Q ss_pred cCCCCCEEEEcc
Q 014145 273 HLENLATLEVSK 284 (430)
Q Consensus 273 ~l~~L~~L~l~~ 284 (430)
.+++|+.|++++
T Consensus 194 ~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 194 KAPNLKILNLSG 205 (267)
T ss_dssp HSTTCCEEECTT
T ss_pred hCCCCCEEECCC
Confidence 444555555544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=80.31 E-value=3 Score=32.68 Aligned_cols=34 Identities=15% Similarity=0.042 Sum_probs=17.7
Q ss_pred CCCCEEecccCCCceeeccCCchhhhhcccccEEEeec
Q 014145 223 PQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISE 260 (430)
Q Consensus 223 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~ 260 (430)
++|+.|+|++ +.++.+....+ ..+++|+.|+|.+
T Consensus 31 ~~l~~L~Ls~-N~l~~l~~~~f---~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 31 VDTTELVLTG-NNLTALPPGLL---DALPALRTAHLGA 64 (130)
T ss_dssp TTCSEEECTT-SCCSSCCTTTG---GGCTTCCEEECCS
T ss_pred cCCCEEECCC-CcCCccChhhh---hhccccCEEEecC
Confidence 3556666655 34555544444 4455555555554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=80.06 E-value=1.5 Score=34.42 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=16.5
Q ss_pred CcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecC
Q 014145 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~ 115 (430)
+|+.|++++. ++.. .+.+.+..+++|++|+|++|
T Consensus 32 ~l~~L~Ls~N-~l~~-l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTA-LPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSS-CCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCc-cChhhhhhccccCEEEecCC
Confidence 4555555553 2333 23333455555555555554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.57 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.54 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.49 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.48 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.46 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.46 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.45 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.41 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.39 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.39 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.38 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.35 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.34 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.32 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.29 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.28 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.27 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.25 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.24 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.2 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.76 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.69 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.66 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.66 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.6 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 98.52 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.34 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.19 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.18 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 98.15 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.13 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.12 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 98.1 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 97.95 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 95.67 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 94.63 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 93.14 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 92.61 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 90.84 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 90.18 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1e-15 Score=146.09 Aligned_cols=145 Identities=14% Similarity=0.204 Sum_probs=82.7
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcc
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSES 299 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~ 299 (430)
..+++|+.|+++++ .++.+.. + ..+++|+.|+++++. +..++ .+..++.++.+.+..+. +..+. ....
T Consensus 238 ~~l~~L~~L~l~~n-~l~~~~~--~---~~~~~L~~L~l~~~~-l~~~~-~~~~~~~l~~l~~~~n~-l~~~~---~~~~ 305 (384)
T d2omza2 238 ASLTNLTDLDLANN-QISNLAP--L---SGLTKLTELKLGANQ-ISNIS-PLAGLTALTNLELNENQ-LEDIS---PISN 305 (384)
T ss_dssp GGCTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CSCCG---GGGG
T ss_pred hcccccchhccccC-ccCCCCc--c---cccccCCEeeccCcc-cCCCC-ccccccccccccccccc-ccccc---ccch
Confidence 45566666666664 3433321 1 455666666666543 33332 23455566666666542 33332 2455
Q ss_pred ccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCC
Q 014145 300 LVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGV 379 (430)
Q Consensus 300 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 379 (430)
++.++.|+++++ .+.++. ....+++|++|++++| .+++++. ...+++|++|++++| +++.++. +
T Consensus 306 ~~~l~~L~ls~n-~l~~l~---------~l~~l~~L~~L~L~~n-~l~~l~~---l~~l~~L~~L~l~~N-~l~~l~~-l 369 (384)
T d2omza2 306 LKNLTYLTLYFN-NISDIS---------PVSSLTKLQRLFFANN-KVSDVSS---LANLTNINWLSAGHN-QISDLTP-L 369 (384)
T ss_dssp CTTCSEEECCSS-CCSCCG---------GGGGCTTCCEEECCSS-CCCCCGG---GGGCTTCCEEECCSS-CCCBCGG-G
T ss_pred hcccCeEECCCC-CCCCCc---------ccccCCCCCEEECCCC-CCCCChh---HcCCCCCCEEECCCC-cCCCChh-h
Confidence 667777777765 344432 1223778888888877 5666542 234778888888765 4555543 4
Q ss_pred cCCCCceeeeccc
Q 014145 380 VDAPKLNKVKPTE 392 (430)
Q Consensus 380 ~~~~~L~~l~l~~ 392 (430)
..+++|+.|++.+
T Consensus 370 ~~l~~L~~L~L~~ 382 (384)
T d2omza2 370 ANLTRITQLGLND 382 (384)
T ss_dssp TTCTTCSEEECCC
T ss_pred ccCCCCCEeeCCC
Confidence 5677888887743
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=1.5e-14 Score=137.68 Aligned_cols=269 Identities=13% Similarity=0.216 Sum_probs=165.0
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
++++ .++..+++|++|+++++. ++.++. ...+++|++|++++|. +..+.+ +..+++|+.|+++++. +.
T Consensus 56 I~~l-~gl~~L~nL~~L~Ls~N~-l~~l~~-----l~~L~~L~~L~L~~n~-i~~i~~---l~~l~~L~~L~~~~~~-~~ 123 (384)
T d2omza2 56 IKSI-DGVEYLNNLTQINFSNNQ-LTDITP-----LKNLTKLVDILMNNNQ-IADITP---LANLTNLTGLTLFNNQ-IT 123 (384)
T ss_dssp CCCC-TTGGGCTTCCEEECCSSC-CCCCGG-----GTTCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CC
T ss_pred CCCc-cccccCCCCCEEeCcCCc-CCCCcc-----ccCCcccccccccccc-cccccc---cccccccccccccccc-cc
Confidence 4444 456778899999998876 776432 2578889999998874 555433 4578889999887763 22
Q ss_pred Eecccccc-------------cCC-----------------------------------------ccCcCCcCCccceee
Q 014145 120 EVLHLEEL-------------NAD-----------------------------------------KEHIGPLFPKLFELT 145 (430)
Q Consensus 120 ~~~~~~~~-------------~~~-----------------------------------------~~~l~~~l~~L~~L~ 145 (430)
.+...... ... .......+++++.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 203 (384)
T d2omza2 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 203 (384)
T ss_dssp CCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceee
Confidence 21110000 000 000112334444444
Q ss_pred cCCccccccccCCccccccCCCccEEEeccCCCccccc----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCC
Q 014145 146 LMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVA 221 (430)
Q Consensus 146 l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 221 (430)
+.++ .+..++. ...+++|++|.+.++. ++.++ .++++.+++.+|.+.++. ....
T Consensus 204 l~~n-~i~~~~~----~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~----------------~~~~ 261 (384)
T d2omza2 204 ATNN-QISDITP----LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLA----------------PLSG 261 (384)
T ss_dssp CCSS-CCCCCGG----GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCG----------------GGTT
T ss_pred ccCC-ccCCCCc----ccccCCCCEEECCCCC-CCCcchhhcccccchhccccCccCCCC----------------cccc
Confidence 4442 2222211 2334455555555443 33322 344555555555444322 3567
Q ss_pred CCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhcccc
Q 014145 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLV 301 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~ 301 (430)
+++|++|+++++ .+..+.. + ..++.++.+.+..+. +..++ .+..+++++.|+++++ .+.+++. +..++
T Consensus 262 ~~~L~~L~l~~~-~l~~~~~--~---~~~~~l~~l~~~~n~-l~~~~-~~~~~~~l~~L~ls~n-~l~~l~~---l~~l~ 329 (384)
T d2omza2 262 LTKLTELKLGAN-QISNISP--L---AGLTALTNLELNENQ-LEDIS-PISNLKNLTYLTLYFN-NISDISP---VSSLT 329 (384)
T ss_dssp CTTCSEEECCSS-CCCCCGG--G---TTCTTCSEEECCSSC-CSCCG-GGGGCTTCSEEECCSS-CCSCCGG---GGGCT
T ss_pred cccCCEeeccCc-ccCCCCc--c---ccccccccccccccc-ccccc-ccchhcccCeEECCCC-CCCCCcc---cccCC
Confidence 889999999885 4544322 2 677889999998864 44442 4668899999999987 5666653 67899
Q ss_pred ccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCCcccCCCCccEEeecc
Q 014145 302 NLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGNYALEFPSLEHVVVRQ 368 (430)
Q Consensus 302 ~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~ 368 (430)
+|++|++++| .++++. ....+++|++|+++++ .++++.. ...+++|++|++++
T Consensus 330 ~L~~L~L~~n-~l~~l~---------~l~~l~~L~~L~l~~N-~l~~l~~---l~~l~~L~~L~L~~ 382 (384)
T d2omza2 330 KLQRLFFANN-KVSDVS---------SLANLTNINWLSAGHN-QISDLTP---LANLTRITQLGLND 382 (384)
T ss_dssp TCCEEECCSS-CCCCCG---------GGGGCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEECCC
T ss_pred CCCEEECCCC-CCCCCh---------hHcCCCCCCEEECCCC-cCCCChh---hccCCCCCEeeCCC
Confidence 9999999998 455543 1223899999999986 6777653 34589999999976
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.57 E-value=8.1e-14 Score=128.73 Aligned_cols=113 Identities=18% Similarity=0.239 Sum_probs=65.6
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+.++|.++ .+++++|+++++. ++.++... + ..+++|++|++++|. +..+.+. .++++++|++|++++| .++
T Consensus 22 L~~lP~~l--~~~l~~L~Ls~N~-i~~l~~~~-f--~~l~~L~~L~l~~n~-~~~i~~~-~f~~l~~L~~L~l~~n-~l~ 92 (305)
T d1xkua_ 22 LEKVPKDL--PPDTALLDLQNNK-ITEIKDGD-F--KNLKNLHTLILINNK-ISKISPG-AFAPLVKLERLYLSKN-QLK 92 (305)
T ss_dssp CCSCCCSC--CTTCCEEECCSSC-CCCBCTTT-T--TTCTTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSS-CCS
T ss_pred CCccCCCC--CCCCCEEECcCCc-CCCcChhH-h--hcccccccccccccc-ccccchh-hhhCCCccCEecccCC-ccC
Confidence 55666654 2578888888775 76654432 1 457788888888874 4444343 3667888888888887 455
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccC
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c 176 (430)
.+ |.. ..+.++.|.+.++ .+..++.. .......+..+.+..+
T Consensus 93 ~l---------~~~---~~~~l~~L~~~~n-~l~~l~~~--~~~~~~~~~~l~~~~n 134 (305)
T d1xkua_ 93 EL---------PEK---MPKTLQELRVHEN-EITKVRKS--VFNGLNQMIVVELGTN 134 (305)
T ss_dssp BC---------CSS---CCTTCCEEECCSS-CCCBBCHH--HHTTCTTCCEEECCSS
T ss_pred cC---------ccc---hhhhhhhhhcccc-chhhhhhh--hhhccccccccccccc
Confidence 55 332 2356666666653 33333211 1223445555555444
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.54 E-value=2e-14 Score=133.52 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=79.8
Q ss_pred CCcceeecccccCCe---eeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccc
Q 014145 51 RDIKYLQLGHFPRLQ---EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 127 (430)
.+++.|+++++. +. .++... +.+++|++|++++|.++....|.. +.++++|++|++++|. +..+
T Consensus 50 ~~v~~L~L~~~~-l~g~~~lp~~l----~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~-l~~~------ 116 (313)
T d1ogqa_ 50 YRVNNLDLSGLN-LPKPYPIPSSL----ANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTN-VSGA------ 116 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG----GGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEEC-CEEE------
T ss_pred EEEEEEECCCCC-CCCCCCCChHH----hcCccccccccccccccccccccc-cccccccchhhhcccc-cccc------
Confidence 478999998875 43 233333 679999999999876666444544 7789999999999984 5554
Q ss_pred cCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 128 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
+...+..+++|+.+++.++.....+|.. +..+++|+.+.+.++.
T Consensus 117 ---~~~~~~~~~~L~~l~l~~N~~~~~~p~~---l~~l~~L~~l~l~~n~ 160 (313)
T d1ogqa_ 117 ---IPDFLSQIKTLVTLDFSYNALSGTLPPS---ISSLPNLVGITFDGNR 160 (313)
T ss_dssp ---CCGGGGGCTTCCEEECCSSEEESCCCGG---GGGCTTCCEEECCSSC
T ss_pred ---ccccccchhhhcccccccccccccCchh---hccCcccceeeccccc
Confidence 3344577889999999987666656544 7788888999888775
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.49 E-value=3.5e-14 Score=131.78 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=87.4
Q ss_pred hhhhcccCCCCcceeecccccCCe-eeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccE
Q 014145 42 KCYEEMIGFRDIKYLQLGHFPRLQ-EIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEE 120 (430)
Q Consensus 42 ~l~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 120 (430)
.+|.++..+++|++|+++++.++. .++... ..+++|++|+++++. +....+.. +..+.+|+++++++|.....
T Consensus 67 ~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i----~~L~~L~~L~Ls~N~-l~~~~~~~-~~~~~~L~~l~l~~N~~~~~ 140 (313)
T d1ogqa_ 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAI----AKLTQLHYLYITHTN-VSGAIPDF-LSQIKTLVTLDFSYNALSGT 140 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGG----GGCTTCSEEEEEEEC-CEEECCGG-GGGCTTCCEEECCSSEEESC
T ss_pred CCChHHhcCcccccccccccccccccccccc----ccccccchhhhcccc-cccccccc-ccchhhhccccccccccccc
Confidence 477888999999999999866566 444333 689999999999984 55544443 67899999999999865554
Q ss_pred ecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCc-cEEEeccCCCccc
Q 014145 121 VLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPEL-RYLAIENCPDMET 181 (430)
Q Consensus 121 ~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L-~~L~l~~c~~l~~ 181 (430)
+ |..+ ..+++|+.++++++.....+|.. ...+..+ +.+.+.++. ++.
T Consensus 141 ~---------p~~l-~~l~~L~~l~l~~n~l~~~ip~~---~~~l~~l~~~l~~~~n~-l~~ 188 (313)
T d1ogqa_ 141 L---------PPSI-SSLPNLVGITFDGNRISGAIPDS---YGSFSKLFTSMTISRNR-LTG 188 (313)
T ss_dssp C---------CGGG-GGCTTCCEEECCSSCCEEECCGG---GGCCCTTCCEEECCSSE-EEE
T ss_pred C---------chhh-ccCcccceeeccccccccccccc---ccccccccccccccccc-ccc
Confidence 4 4555 88999999999997655556544 5566665 556665543 443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=9.9e-15 Score=133.67 Aligned_cols=191 Identities=16% Similarity=0.182 Sum_probs=122.2
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
....+|++|++++|. +.......++.++++|++|++++|. +.... +..+ ..+++|++|++++|..+...
T Consensus 43 ~~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~--------~~~l-~~~~~L~~L~Ls~c~~itd~ 111 (284)
T d2astb2 43 FSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPI--------VNTL-AKNSNLVRLNLSGCSGFSEF 111 (284)
T ss_dssp CCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHH--------HHHH-TTCTTCSEEECTTCBSCCHH
T ss_pred ccCCCCCEEECCCCc-cCHHHHHHHHHhCCCcccccccccC-CCcHH--------HHHH-hcCCCCcCcccccccccccc
Confidence 345689999999874 4433334457889999999999884 32210 1222 56788999999988777543
Q ss_pred cCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCC-
Q 014145 156 CNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLH- 234 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~- 234 (430)
..... ...+++|++|++.+|..+++...... .....++|+.|++++|.
T Consensus 112 ~l~~l-~~~~~~L~~L~ls~c~~~~~~~~~~~------------------------------~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 112 ALQTL-LSSCSRLDELNLSWCFDFTEKHVQVA------------------------------VAHVSETITQLNLSGYRK 160 (284)
T ss_dssp HHHHH-HHHCTTCCEEECCCCTTCCHHHHHHH------------------------------HHHSCTTCCEEECCSCGG
T ss_pred ccchh-hHHHHhccccccccccccccccchhh------------------------------hcccccccchhhhccccc
Confidence 11100 34678888888888876654210000 01234677888887753
Q ss_pred CceeeccCCchhhhhcccccEEEeecCCCcc-cccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 235 KVQHLWKENDESNKAFANLIRLKISECSKLQ-KLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
.+++.. .......+++|++|++++|..++ ..+..+..+++|++|++++|..+++.... .++.+|+|++|++.+|
T Consensus 161 ~i~~~~--l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~-~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 161 NLQKSD--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GSCHHH--HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred cccccc--ccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHH-HHhcCCCCCEEeeeCC
Confidence 222211 11112567888888888887665 34455667888999999998887765433 2567888999999887
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.46 E-value=1.5e-12 Score=120.03 Aligned_cols=234 Identities=13% Similarity=0.109 Sum_probs=144.2
Q ss_pred chhhhhhhc-ccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCC
Q 014145 38 STIQKCYEE-MIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 38 ~~~~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 116 (430)
+.++.++.. +..+++|++|+++++. +..+.... ...+++|+.|+++++ ++..++.. ....++.|++.++
T Consensus 41 N~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~---f~~l~~L~~L~l~~n-~l~~l~~~----~~~~l~~L~~~~n- 110 (305)
T d1xkua_ 41 NKITEIKDGDFKNLKNLHTLILINNK-ISKISPGA---FAPLVKLERLYLSKN-QLKELPEK----MPKTLQELRVHEN- 110 (305)
T ss_dssp SCCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSS-CCSBCCSS----CCTTCCEEECCSS-
T ss_pred CcCCCcChhHhhcccccccccccccc-ccccchhh---hhCCCccCEecccCC-ccCcCccc----hhhhhhhhhcccc-
Confidence 457777764 5688999999999887 55543222 256899999999998 46665443 3678999999887
Q ss_pred CccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEec
Q 014145 117 SLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTD 193 (430)
Q Consensus 117 ~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~ 193 (430)
.+..+ +...+.....+..+....+...... ........+++|+.+.+.++. ++.++ ++++++|+++
T Consensus 111 ~l~~l---------~~~~~~~~~~~~~l~~~~n~~~~~~-~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~l~ 179 (305)
T d1xkua_ 111 EITKV---------RKSVFNGLNQMIVVELGTNPLKSSG-IENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLD 179 (305)
T ss_dssp CCCBB---------CHHHHTTCTTCCEEECCSSCCCGGG-BCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECT
T ss_pred chhhh---------hhhhhhccccccccccccccccccC-CCccccccccccCccccccCC-ccccCcccCCccCEEECC
Confidence 34444 2222345567777777664332221 122225677888888888775 44443 5567777777
Q ss_pred CCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCccc
Q 014145 194 NKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~ 273 (430)
++......+ .....++.++.|+++++ .+..+....+ ..+++|++|+++++ .++.+|.++..
T Consensus 180 ~n~~~~~~~--------------~~~~~~~~l~~L~~s~n-~l~~~~~~~~---~~l~~L~~L~L~~N-~L~~lp~~l~~ 240 (305)
T d1xkua_ 180 GNKITKVDA--------------ASLKGLNNLAKLGLSFN-SISAVDNGSL---ANTPHLRELHLNNN-KLVKVPGGLAD 240 (305)
T ss_dssp TSCCCEECT--------------GGGTTCTTCCEEECCSS-CCCEECTTTG---GGSTTCCEEECCSS-CCSSCCTTTTT
T ss_pred CCcCCCCCh--------------hHhhccccccccccccc-cccccccccc---cccccceeeecccc-ccccccccccc
Confidence 666443220 12345567777777764 5666655554 56677777777775 45666666666
Q ss_pred CCCCCEEEEccCCCcccccCchh-----hccccccceEeecccc
Q 014145 274 LENLATLEVSKCHGLINVLTLST-----SESLVNLGRMKIADCK 312 (430)
Q Consensus 274 l~~L~~L~l~~c~~l~~l~~~~~-----~~~l~~L~~L~l~~c~ 312 (430)
+++|+.|+++++ ++++++...+ ....++|+.|++++++
T Consensus 241 l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~ 283 (305)
T d1xkua_ 241 HKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 283 (305)
T ss_dssp CSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCc
Confidence 777777777764 4555543211 1223455555555543
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.46 E-value=1.5e-13 Score=121.27 Aligned_cols=184 Identities=17% Similarity=0.218 Sum_probs=102.3
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.+|+.|++.+| ++.++.+ +..+++|++|++++|. +..+ .. +..+++|+.+++.++ .+..++
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~~---l~~l~~L~~L~ls~n~-i~~~----------~~-l~~l~~l~~l~~~~n-~~~~i~ 101 (227)
T d1h6ua2 39 DLDGITTLSAFGT-GVTTIEG---VQYLNNLIGLELKDNQ-ITDL----------AP-LKNLTKITELELSGN-PLKNVS 101 (227)
T ss_dssp HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSSC-CCCC----------GG-GTTCCSCCEEECCSC-CCSCCG
T ss_pred HcCCcCEEECCCC-CCCcchh---HhcCCCCcEeecCCce-eecc----------cc-ccccccccccccccc-cccccc
Confidence 4667777777776 4555322 4567777777777763 4333 11 266677777777765 333343
Q ss_pred CCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccC
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (430)
. +..+++|+.+.+.++......+ .+.+..+.+.++.+.... .....++|++|.++++
T Consensus 102 ~----l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~~~~~~~L~~L~l~~n 161 (227)
T d1h6ua2 102 A----IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS----------------PLAGLTNLQYLSIGNA 161 (227)
T ss_dssp G----GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG----------------GGGGCTTCCEEECCSS
T ss_pred c----ccccccccccccccccccccchhccccchhhhhchhhhhchhh----------------hhcccccccccccccc
Confidence 2 5567777777777665322111 334455555444433221 1234556667766664
Q ss_pred CCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeec
Q 014145 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 309 (430)
.+.... .+ ..+++|++|+++++ .++.++ .+..+++|++|++++| .+++++. ++.+++|++|+++
T Consensus 162 -~~~~~~--~l---~~l~~L~~L~Ls~n-~l~~l~-~l~~l~~L~~L~Ls~N-~lt~i~~---l~~l~~L~~L~ls 225 (227)
T d1h6ua2 162 -QVSDLT--PL---ANLSKLTTLKADDN-KISDIS-PLASLPNLIEVHLKNN-QISDVSP---LANTSNLFIVTLT 225 (227)
T ss_dssp -CCCCCG--GG---TTCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECTTS-CCCBCGG---GTTCTTCCEEEEE
T ss_pred -ccccch--hh---cccccceecccCCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCCcc---cccCCCCCEEEee
Confidence 232221 12 55666666766665 344443 2456666677776665 4555543 4556666666664
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.7e-12 Score=118.39 Aligned_cols=198 Identities=16% Similarity=0.128 Sum_probs=114.2
Q ss_pred CcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCc
Q 014145 80 NLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFT 159 (430)
Q Consensus 80 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~ 159 (430)
++++|+++++ ++..+++. .+.++++|++|+++++ .+..+ +......++.++.+.+.....+..++..
T Consensus 33 ~~~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~ls~n-~l~~i---------~~~~~~~~~~~~~l~~~~~~~~~~l~~~- 99 (284)
T d1ozna_ 33 ASQRIFLHGN-RISHVPAA-SFRACRNLTILWLHSN-VLARI---------DAAAFTGLALLEQLDLSDNAQLRSVDPA- 99 (284)
T ss_dssp TCSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCEE---------CTTTTTTCTTCCEEECCSCTTCCCCCTT-
T ss_pred CCCEEECcCC-cCCCCCHH-Hhhccccccccccccc-ccccc---------ccccccccccccccccccccccccccch-
Confidence 4455555543 23332222 2444555555555544 23333 2233344445555544444444443221
Q ss_pred cccccCCCccEEEeccCCCccccc------CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccC
Q 014145 160 ENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRL 233 (430)
Q Consensus 160 ~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 233 (430)
....+++|++|.+.++. +.... ...|+.++++++.+.++.+ .....+++|++|+++++
T Consensus 100 -~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~--------------~~f~~~~~L~~L~l~~N 163 (284)
T d1ozna_ 100 -TFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPD--------------DTFRDLGNLTHLFLHGN 163 (284)
T ss_dssp -TTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------TTTTTCTTCCEEECCSS
T ss_pred -hhcccccCCEEecCCcc-cccccccccchhcccchhhhccccccccCh--------------hHhccccchhhcccccC
Confidence 13445555555555544 22111 3345566666666555431 12346778899999885
Q ss_pred CCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeecccc
Q 014145 234 HKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCK 312 (430)
Q Consensus 234 ~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~ 312 (430)
+++.+....+ ..+++|+.+.+.++......|..+..+++|++|+++++. +..++.. .++.+++|++|++++.+
T Consensus 164 -~l~~l~~~~f---~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~~~-~~~~~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 164 -RISSVPERAF---RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTE-ALAPLRALQYLRLNDNP 236 (284)
T ss_dssp -CCCEECTTTT---TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHH-HHTTCTTCCEEECCSSC
T ss_pred -cccccchhhh---ccccccchhhhhhccccccChhHhhhhhhcccccccccc-ccccccc-ccccccccCEEEecCCC
Confidence 6788777766 778899999998875555456677788899999998864 5555443 35678889999887643
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.3e-12 Score=114.58 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCC
Q 014145 79 NNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNF 158 (430)
Q Consensus 79 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~ 158 (430)
++++.|+++++ .+..+ +.+.+.++++|++|++++| .++.+ +. +..+++|++|+++++ .+..++..
T Consensus 31 ~~l~~L~Ls~N-~i~~l-~~~~f~~l~~L~~L~L~~N-~l~~l---------~~--~~~l~~L~~L~Ls~N-~l~~~~~~ 95 (266)
T d1p9ag_ 31 KDTTILHLSEN-LLYTF-SLATLMPYTRLTQLNLDRA-ELTKL---------QV--DGTLPVLGTLDLSHN-QLQSLPLL 95 (266)
T ss_dssp TTCCEEECTTS-CCSEE-EGGGGTTCTTCCEEECTTS-CCCEE---------EC--CSCCTTCCEEECCSS-CCSSCCCC
T ss_pred cCCCEEECcCC-cCCCc-CHHHhhccccccccccccc-ccccc---------cc--ccccccccccccccc-cccccccc
Confidence 34555555554 23332 2222445555566665555 34444 11 134555555655553 33333222
Q ss_pred ccccccCCCccEEEeccCC
Q 014145 159 TENIIEMPELRYLAIENCP 177 (430)
Q Consensus 159 ~~~~~~~~~L~~L~l~~c~ 177 (430)
...+++|++|++.++.
T Consensus 96 ---~~~l~~L~~L~l~~~~ 111 (266)
T d1p9ag_ 96 ---GQTLPALTVLDVSFNR 111 (266)
T ss_dssp ---TTTCTTCCEEECCSSC
T ss_pred ---cccccccccccccccc
Confidence 3445555555555543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.7e-12 Score=116.18 Aligned_cols=208 Identities=13% Similarity=0.082 Sum_probs=154.4
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
++++|..+. +++++|+|++++ ++.++... + ..+++|++|+++++ ++..+.+ ..+..+..++.+++..+..+.
T Consensus 23 L~~iP~~ip--~~~~~L~Ls~N~-i~~i~~~~-f--~~l~~L~~L~ls~n-~l~~i~~-~~~~~~~~~~~l~~~~~~~~~ 94 (284)
T d1ozna_ 23 LQAVPVGIP--AASQRIFLHGNR-ISHVPAAS-F--RACRNLTILWLHSN-VLARIDA-AAFTGLALLEQLDLSDNAQLR 94 (284)
T ss_dssp CSSCCTTCC--TTCSEEECTTSC-CCEECTTT-T--TTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSCTTCC
T ss_pred CCccCCCCC--CCCCEEECcCCc-CCCCCHHH-h--hccccccccccccc-ccccccc-ccccccccccccccccccccc
Confidence 556766543 589999999876 88765443 1 56889999999986 4555433 346678899999988777777
Q ss_pred EecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc------CCCceEEEec
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI------SNSVVHVTTD 193 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~------~~~L~~L~l~ 193 (430)
.+ +...+..+++|++|++.++.. ..++.. ....+++|+.+.+.++. ++.++ ...+++|+++
T Consensus 95 ~l---------~~~~~~~l~~L~~L~l~~n~~-~~~~~~--~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~ 161 (284)
T d1ozna_ 95 SV---------DPATFHGLGRLHTLHLDRCGL-QELGPG--LFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLH 161 (284)
T ss_dssp CC---------CTTTTTTCTTCCEEECTTSCC-CCCCTT--TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred cc---------cchhhcccccCCEEecCCccc-cccccc--ccchhcccchhhhcccc-ccccChhHhccccchhhcccc
Confidence 76 455568899999999998753 333221 25678899999999875 66654 3578999999
Q ss_pred CCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCccc
Q 014145 194 NKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWH 273 (430)
Q Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~ 273 (430)
+|.+..+.+ .....+++|+.++++++ ++..+.+..+ ..+++|+.|+++++......+..+..
T Consensus 162 ~N~l~~l~~--------------~~f~~l~~L~~l~l~~N-~l~~i~~~~f---~~l~~L~~L~l~~N~i~~~~~~~~~~ 223 (284)
T d1ozna_ 162 GNRISSVPE--------------RAFRGLHSLDRLLLHQN-RVAHVHPHAF---RDLGRLMTLYLFANNLSALPTEALAP 223 (284)
T ss_dssp SSCCCEECT--------------TTTTTCTTCCEEECCSS-CCCEECTTTT---TTCTTCCEEECCSSCCSCCCHHHHTT
T ss_pred cCcccccch--------------hhhccccccchhhhhhc-cccccChhHh---hhhhhccccccccccccccccccccc
Confidence 999876541 23457889999999985 6777777777 88999999999997544433455678
Q ss_pred CCCCCEEEEccCC
Q 014145 274 LENLATLEVSKCH 286 (430)
Q Consensus 274 l~~L~~L~l~~c~ 286 (430)
+++|+.|++++.+
T Consensus 224 ~~~L~~L~l~~N~ 236 (284)
T d1ozna_ 224 LRALQYLRLNDNP 236 (284)
T ss_dssp CTTCCEEECCSSC
T ss_pred ccccCEEEecCCC
Confidence 8999999999853
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=6.9e-12 Score=113.22 Aligned_cols=192 Identities=16% Similarity=0.086 Sum_probs=129.7
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
...+...+.++. +++.+ |.++ -++|++|++++| .+..+ |.+.+..+++|++|+++++ .+..++.
T Consensus 9 ~~~~~~v~C~~~-~L~~i-P~~l---p~~l~~L~Ls~N-~i~~l---------~~~~f~~l~~L~~L~L~~N-~l~~l~~ 72 (266)
T d1p9ag_ 9 VASHLEVNCDKR-NLTAL-PPDL---PKDTTILHLSEN-LLYTF---------SLATLMPYTRLTQLNLDRA-ELTKLQV 72 (266)
T ss_dssp STTCCEEECTTS-CCSSC-CSCC---CTTCCEEECTTS-CCSEE---------EGGGGTTCTTCCEEECTTS-CCCEEEC
T ss_pred cCCCeEEEccCC-CCCee-CcCc---CcCCCEEECcCC-cCCCc---------CHHHhhccccccccccccc-ccccccc
Confidence 344445555543 46665 3331 257999999998 57777 5555688999999999996 6777764
Q ss_pred CccccccCCCccEEEeccCCCccccc-----CCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEeccc
Q 014145 158 FTENIIEMPELRYLAIENCPDMETFI-----SNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSR 232 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~~l~~~~-----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 232 (430)
...+++|++|++.++. ++..+ .+.|+.++++++...++.. .....+.+++.|++++
T Consensus 73 ----~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------~~~~~l~~l~~L~l~~ 133 (266)
T d1p9ag_ 73 ----DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPL--------------GALRGLGELQELYLKG 133 (266)
T ss_dssp ----CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCS--------------STTTTCTTCCEEECTT
T ss_pred ----cccccccccccccccc-ccccccccccccccccccccccccceeec--------------cccccccccccccccc
Confidence 4678999999999885 55433 4567788887777555431 1234567788888877
Q ss_pred CCCceeeccCCchhhhhcccccEEEeecCCCcccccC-CcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccc
Q 014145 233 LHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVT-PSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADC 311 (430)
Q Consensus 233 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c 311 (430)
+ .++.+....+ ..+++|+.++++++ .++.++. .+..+++|++|+++++ .++.+|.. +..+++|+.|++++.
T Consensus 134 n-~l~~l~~~~~---~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~--~~~~~~L~~L~L~~N 205 (266)
T d1p9ag_ 134 N-ELKTLPPGLL---TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKG--FFGSHLLPFAFLHGN 205 (266)
T ss_dssp S-CCCCCCTTTT---TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTT--TTTTCCCSEEECCSC
T ss_pred c-ccceeccccc---cccccchhcccccc-cccccCccccccccccceeecccC-CCcccChh--HCCCCCCCEEEecCC
Confidence 4 5666655555 66778888888775 4454543 3556778888888875 46676652 445677888887754
Q ss_pred c
Q 014145 312 K 312 (430)
Q Consensus 312 ~ 312 (430)
+
T Consensus 206 p 206 (266)
T d1p9ag_ 206 P 206 (266)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.38 E-value=4.4e-12 Score=111.65 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=138.8
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
.+.+|+.|++.++. ++.+ .+. ..+++|+.|+++++ .+....+ +..+++|+++++++|. ++.+
T Consensus 39 ~l~~L~~L~l~~~~-i~~l-~~l----~~l~~L~~L~ls~n-~i~~~~~---l~~l~~l~~l~~~~n~-~~~i------- 100 (227)
T d1h6ua2 39 DLDGITTLSAFGTG-VTTI-EGV----QYLNNLIGLELKDN-QITDLAP---LKNLTKITELELSGNP-LKNV------- 100 (227)
T ss_dssp HHHTCCEEECTTSC-CCCC-TTG----GGCTTCCEEECCSS-CCCCCGG---GTTCCSCCEEECCSCC-CSCC-------
T ss_pred HcCCcCEEECCCCC-CCcc-hhH----hcCCCCcEeecCCc-eeecccc---cccccccccccccccc-cccc-------
Confidence 45689999999886 7764 333 67999999999997 4555433 5689999999999883 5554
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCCCCCcccCCCc
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNKEPEKLTSEEN 205 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~~~~~~~~~~~ 205 (430)
.++ ..+++|+.+.+.++.... +.. ....+.+..+.+..+......+ +.+++.+.+.+|.+....
T Consensus 101 ---~~l-~~l~~L~~l~l~~~~~~~-~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---- 167 (227)
T d1h6ua2 101 ---SAI-AGLQSIKTLDLTSTQITD-VTP----LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT---- 167 (227)
T ss_dssp ---GGG-TTCTTCCEEECTTSCCCC-CGG----GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG----
T ss_pred ---ccc-cccccccccccccccccc-cch----hccccchhhhhchhhhhchhhhhccccccccccccccccccch----
Confidence 233 678999999999875432 221 4567888899987775332222 678999999998876544
Q ss_pred eeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEcc
Q 014145 206 FFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 206 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~ 284 (430)
..+.+++|+.|+++++ .++++.. + ..+++|++|++++| .++.++ .+..+++|+.|++++
T Consensus 168 ------------~l~~l~~L~~L~Ls~n-~l~~l~~--l---~~l~~L~~L~Ls~N-~lt~i~-~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 168 ------------PLANLSKLTTLKADDN-KISDISP--L---ASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTN 226 (227)
T ss_dssp ------------GGTTCTTCCEEECCSS-CCCCCGG--G---GGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEE
T ss_pred ------------hhcccccceecccCCC-ccCCChh--h---cCCCCCCEEECcCC-cCCCCc-ccccCCCCCEEEeeC
Confidence 3567899999999996 6777532 3 78899999999998 577775 377899999999874
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.35 E-value=7.7e-11 Score=109.90 Aligned_cols=114 Identities=21% Similarity=0.300 Sum_probs=78.2
Q ss_pred CCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCC
Q 014145 51 RDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNAD 130 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 130 (430)
.++++|+++++. ++.+ |. ..++|++|+++++ +++.+ |. .+.+|+.|++++| .+..+
T Consensus 38 ~~l~~LdLs~~~-L~~l------p~-~~~~L~~L~Ls~N-~l~~l-p~----~~~~L~~L~l~~n-~l~~l--------- 93 (353)
T d1jl5a_ 38 RQAHELELNNLG-LSSL------PE-LPPHLESLVASCN-SLTEL-PE----LPQSLKSLLVDNN-NLKAL--------- 93 (353)
T ss_dssp HTCSEEECTTSC-CSCC------CS-CCTTCSEEECCSS-CCSSC-CC----CCTTCCEEECCSS-CCSCC---------
T ss_pred cCCCEEEeCCCC-CCCC------CC-CCCCCCEEECCCC-CCccc-cc----chhhhhhhhhhhc-ccchh---------
Confidence 478999999876 6653 32 4678999999875 67765 33 2678999999987 45444
Q ss_pred ccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc--CCCceEEEecCCCCC
Q 014145 131 KEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI--SNSVVHVTTDNKEPE 198 (430)
Q Consensus 131 ~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--~~~L~~L~l~~~~~~ 198 (430)
+ ...+.|++|+++++ .+..+|. ...+++|++|++.++. ++..+ ...+..+.+..+...
T Consensus 94 ~----~lp~~L~~L~L~~n-~l~~lp~----~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~l~~~~~~~~ 153 (353)
T d1jl5a_ 94 S----DLPPLLEYLGVSNN-QLEKLPE----LQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQLE 153 (353)
T ss_dssp C----SCCTTCCEEECCSS-CCSSCCC----CTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCS
T ss_pred h----hhcccccccccccc-ccccccc----hhhhccceeecccccc-ccccccccccccchhhcccccc
Confidence 1 11246999999986 5666754 5678899999998876 34333 445666666555533
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.2e-13 Score=126.36 Aligned_cols=217 Identities=17% Similarity=0.129 Sum_probs=131.1
Q ss_pred cCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccc
Q 014145 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEEL 127 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 127 (430)
....+|++|+++++. +....... ....+++|++|++++|. +....+ ..+..+++|++|++++|..++..+ +
T Consensus 43 ~~~~~L~~LdLs~~~-i~~~~l~~--l~~~c~~L~~L~L~~~~-l~~~~~-~~l~~~~~L~~L~Ls~c~~itd~~----l 113 (284)
T d2astb2 43 FSPFRVQHMDLSNSV-IEVSTLHG--ILSQCSKLQNLSLEGLR-LSDPIV-NTLAKNSNLVRLNLSGCSGFSEFA----L 113 (284)
T ss_dssp CCCBCCCEEECTTCE-ECHHHHHH--HHTTBCCCSEEECTTCB-CCHHHH-HHHTTCTTCSEEECTTCBSCCHHH----H
T ss_pred ccCCCCCEEECCCCc-cCHHHHHH--HHHhCCCcccccccccC-CCcHHH-HHHhcCCCCcCccccccccccccc----c
Confidence 355689999999876 43211000 11568999999999984 444223 336678999999999998775421 0
Q ss_pred cCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC-CcccccCCCceEEEecCCCCCcccCCCce
Q 014145 128 NADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP-DMETFISNSVVHVTTDNKEPEKLTSEENF 206 (430)
Q Consensus 128 ~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~-~l~~~~~~~L~~L~l~~~~~~~~~~~~~l 206 (430)
..+...+++|++|++++|..+............+++|+.|.+.+|. .+++....
T Consensus 114 ----~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~--------------------- 168 (284)
T d2astb2 114 ----QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--------------------- 168 (284)
T ss_dssp ----HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH---------------------
T ss_pred ----chhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccc---------------------
Confidence 1223568999999999987764321111102245789999999874 23321100
Q ss_pred eeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccc-ccCCcccCCCCCEEEEccC
Q 014145 207 FLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQK-LVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~l~~l~~L~~L~l~~c 285 (430)
.....+++|++|++++|..+++.....+ ..+++|++|++++|..++. .+..+..+++|+.|++++|
T Consensus 169 ----------~l~~~~~~L~~L~L~~~~~itd~~~~~l---~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 169 ----------TLVRRCPNLVHLDLSDSVMLKNDCFQEF---FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp ----------HHHHHCTTCSEEECTTCTTCCGGGGGGG---GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ----------ccccccccccccccccccCCCchhhhhh---cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 0113467788888877766655333333 5677888888888766542 2334567788888888887
Q ss_pred CCcccccCchhhccccccceEeeccccccchh
Q 014145 286 HGLINVLTLSTSESLVNLGRMKIADCKMIEQI 317 (430)
Q Consensus 286 ~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~ 317 (430)
+.+-........+|.|+ + +|..+..+
T Consensus 236 --~~d~~l~~l~~~lp~L~---i-~~~~ls~~ 261 (284)
T d2astb2 236 --VPDGTLQLLKEALPHLQ---I-NCSHFTTI 261 (284)
T ss_dssp --SCTTCHHHHHHHSTTSE---E-SCCCSCCT
T ss_pred --CCHHHHHHHHHhCcccc---c-cCccCCCC
Confidence 22222111234455554 3 45555444
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=1.6e-11 Score=108.86 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=54.0
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
++++|.++ ++++++|+++++. ++.++... + ..+++|++|+++++..... ++...+.++++++++.+..+..+.
T Consensus 20 l~~iP~~l--~~~l~~L~Ls~n~-i~~l~~~~-f--~~l~~L~~L~ls~n~~~~~-i~~~~f~~l~~l~~l~~~~~n~l~ 92 (242)
T d1xwdc1 20 VTEIPSDL--PRNAIELRFVLTK-LRVIQKGA-F--SGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIEKANNLL 92 (242)
T ss_dssp CSSCCSCS--CSCCSEEEEESCC-CCEECTTT-T--TTCTTCCEEEEESCTTCCE-ECSSSEESCTTCCEEEEECCTTCC
T ss_pred CCCcCCCC--CCCCCEEECcCCc-CCccChhH-h--hccchhhhhhhccccccce-eecccccccccccccccccccccc
Confidence 44555543 2467777777665 66544332 1 3467777777777643222 233235566777777776655555
Q ss_pred EecccccccCCccCcCCcCCccceeecCCc
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDL 149 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~ 149 (430)
.. +.+.+..+++|+++++.++
T Consensus 93 ~~---------~~~~~~~l~~L~~l~l~~~ 113 (242)
T d1xwdc1 93 YI---------NPEAFQNLPNLQYLLISNT 113 (242)
T ss_dssp EE---------CTTSEECCTTCCEEEEESC
T ss_pred cc---------ccccccccccccccccchh
Confidence 55 3344466677777777664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=5.1e-11 Score=105.61 Aligned_cols=87 Identities=21% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccC
Q 014145 78 FNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCN 157 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~ 157 (430)
.+++++|+++++ ++..+++ ..+.++++|++|++++|.....+ +.+.+..++.++++.+..+..+..++.
T Consensus 28 ~~~l~~L~Ls~n-~i~~l~~-~~f~~l~~L~~L~ls~n~~~~~i---------~~~~f~~l~~l~~l~~~~~n~l~~~~~ 96 (242)
T d1xwdc1 28 PRNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVI---------EADVFSNLPKLHEIRIEKANNLLYINP 96 (242)
T ss_dssp CSCCSEEEEESC-CCCEECT-TTTTTCTTCCEEEEESCTTCCEE---------CSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred CCCCCEEECcCC-cCCccCh-hHhhccchhhhhhhcccccccee---------ecccccccccccccccccccccccccc
Confidence 457788888776 3554333 33567788888888877655544 344446677777777766555554432
Q ss_pred CccccccCCCccEEEeccCC
Q 014145 158 FTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~c~ 177 (430)
. ....+++|+++.+.++.
T Consensus 97 ~--~~~~l~~L~~l~l~~~~ 114 (242)
T d1xwdc1 97 E--AFQNLPNLQYLLISNTG 114 (242)
T ss_dssp T--SEECCTTCCEEEEESCC
T ss_pred c--cccccccccccccchhh
Confidence 2 24567777777777654
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.28 E-value=6.7e-12 Score=108.16 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=99.0
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+++++.|++++| ++.++.. ++.+++|++|++++| .+..+ + + +..+++|++|+++++. +..++
T Consensus 38 ~l~~l~~L~l~~~-~i~~l~~---l~~l~nL~~L~Ls~N-~l~~~---------~-~-l~~l~~L~~L~l~~n~-~~~~~ 100 (199)
T d2omxa2 38 DLDQVTTLQADRL-GIKSIDG---VEYLNNLTQINFSNN-QLTDI---------T-P-LKNLTKLVDILMNNNQ-IADIT 100 (199)
T ss_dssp HHTTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCC---------G-G-GTTCTTCCEEECCSSC-CCCCG
T ss_pred HhcCCCEEECCCC-CCCCccc---cccCCCcCcCccccc-cccCc---------c-c-ccCCcccccccccccc-ccccc
Confidence 4677778888776 3554322 456788888888877 45554 1 2 3667788888887753 33333
Q ss_pred CCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
. +..+++|+.|.+.++..... .....+++|+.|+++++ .+
T Consensus 101 ~----l~~l~~L~~L~l~~~~~~~~-----------------------------------~~~~~l~~L~~L~l~~n-~l 140 (199)
T d2omxa2 101 P----LANLTNLTGLTLFNNQITDI-----------------------------------DPLKNLTNLNRLELSSN-TI 140 (199)
T ss_dssp G----GTTCTTCSEEECCSSCCCCC-----------------------------------GGGTTCTTCSEEECCSS-CC
T ss_pred c----cccccccccccccccccccc-----------------------------------cccchhhhhHHhhhhhh-hh
Confidence 2 55677777777766652221 12345667777777764 34
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceE
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRM 306 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L 306 (430)
..+. .+ ..+++|+.|++.++ .++.++ .+..+++|++|++++| .+++++. +..+++|++|
T Consensus 141 ~~~~--~l---~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~~---l~~L~~L~~L 199 (199)
T d2omxa2 141 SDIS--AL---SGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLDISSN-KVSDISV---LAKLTNLESL 199 (199)
T ss_dssp CCCG--GG---TTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEE
T ss_pred cccc--cc---cccccccccccccc-cccCCc-cccCCCCCCEEECCCC-CCCCCcc---ccCCCCCCcC
Confidence 4331 12 56677777777775 344443 3567778888888876 4666542 4566777665
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.27 E-value=2.4e-11 Score=105.52 Aligned_cols=165 Identities=21% Similarity=0.295 Sum_probs=108.4
Q ss_pred CCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccccccc
Q 014145 77 FFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFC 156 (430)
Q Consensus 77 ~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~ 156 (430)
.+.+|+.|++++| .+..+.+ ++.+++|++|++++| .+..+ + .+ ..+++|+.|+++++ .+..++
T Consensus 44 ~L~~L~~L~l~~~-~i~~l~~---l~~l~~L~~L~L~~n-~i~~l---------~-~~-~~l~~L~~L~l~~n-~i~~l~ 106 (210)
T d1h6ta2 44 ELNSIDQIIANNS-DIKSVQG---IQYLPNVTKLFLNGN-KLTDI---------K-PL-ANLKNLGWLFLDEN-KVKDLS 106 (210)
T ss_dssp HHHTCCEEECTTS-CCCCCTT---GGGCTTCCEEECCSS-CCCCC---------G-GG-TTCTTCCEEECCSS-CCCCGG
T ss_pred HhcCccEEECcCC-CCCCchh---HhhCCCCCEEeCCCc-cccCc---------c-cc-ccCccccccccccc-cccccc
Confidence 5778999999987 4555433 567999999999998 46555 2 22 67889999999886 566665
Q ss_pred CCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCc
Q 014145 157 NFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKV 236 (430)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 236 (430)
. +..+++|+.|.+.++. +..+ .....++.++.++++++ .+
T Consensus 107 ~----l~~l~~L~~L~l~~~~-~~~~----------------------------------~~l~~l~~l~~l~~~~n-~l 146 (210)
T d1h6ta2 107 S----LKDLKKLKSLSLEHNG-ISDI----------------------------------NGLVHLPQLESLYLGNN-KI 146 (210)
T ss_dssp G----GTTCTTCCEEECTTSC-CCCC----------------------------------GGGGGCTTCCEEECCSS-CC
T ss_pred c----cccccccccccccccc-cccc----------------------------------ccccccccccccccccc-cc
Confidence 3 5678888888888775 2211 12345567777777664 33
Q ss_pred eeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeec
Q 014145 237 QHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIA 309 (430)
Q Consensus 237 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~ 309 (430)
+... .. ..+++|+.++++++. +..++ .+..+++|++|++++| .+++++. +..+++|++|+++
T Consensus 147 ~~~~--~~---~~l~~L~~l~l~~n~-l~~i~-~l~~l~~L~~L~Ls~N-~i~~l~~---l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 147 TDIT--VL---SRLTKLDTLSLEDNQ-ISDIV-PLAGLTKLQNLYLSKN-HISDLRA---LAGLKNLDVLELF 208 (210)
T ss_dssp CCCG--GG---GGCTTCSEEECCSSC-CCCCG-GGTTCTTCCEEECCSS-CCCBCGG---GTTCTTCSEEEEE
T ss_pred cccc--cc---ccccccccccccccc-ccccc-cccCCCCCCEEECCCC-CCCCChh---hcCCCCCCEEEcc
Confidence 3321 11 566777777777753 44443 2556777777777776 4666542 4567777777775
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.25 E-value=3.8e-11 Score=104.18 Aligned_cols=165 Identities=18% Similarity=0.285 Sum_probs=113.1
Q ss_pred CCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccC
Q 014145 50 FRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNA 129 (430)
Q Consensus 50 l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 129 (430)
+.+|++|+++++. ++.+ .+. ..+++|+.|+++++ .+..+.+ +..+++|++|++++| .++.+
T Consensus 45 L~~L~~L~l~~~~-i~~l-~~l----~~l~~L~~L~L~~n-~i~~l~~---~~~l~~L~~L~l~~n-~i~~l-------- 105 (210)
T d1h6ta2 45 LNSIDQIIANNSD-IKSV-QGI----QYLPNVTKLFLNGN-KLTDIKP---LANLKNLGWLFLDEN-KVKDL-------- 105 (210)
T ss_dssp HHTCCEEECTTSC-CCCC-TTG----GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCG--------
T ss_pred hcCccEEECcCCC-CCCc-hhH----hhCCCCCEEeCCCc-cccCccc---cccCccccccccccc-ccccc--------
Confidence 5689999999876 6653 222 57999999999998 4666444 457999999999998 46655
Q ss_pred CccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCcccccCCCceEEEecCCCCCcccCCCceeee
Q 014145 130 DKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFISNSVVHVTTDNKEPEKLTSEENFFLT 209 (430)
Q Consensus 130 ~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 209 (430)
+ . ...+++|+.|++.++.. ..++. +..+++++.+.+.++. ++...
T Consensus 106 -~-~-l~~l~~L~~L~l~~~~~-~~~~~----l~~l~~l~~l~~~~n~-l~~~~-------------------------- 150 (210)
T d1h6ta2 106 -S-S-LKDLKKLKSLSLEHNGI-SDING----LVHLPQLESLYLGNNK-ITDIT-------------------------- 150 (210)
T ss_dssp -G-G-GTTCTTCCEEECTTSCC-CCCGG----GGGCTTCCEEECCSSC-CCCCG--------------------------
T ss_pred -c-c-ccccccccccccccccc-ccccc----cccccccccccccccc-ccccc--------------------------
Confidence 2 3 37789999999998753 33432 6678888888887764 33321
Q ss_pred cCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCcccCCCCCEEEEcc
Q 014145 210 DQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~ 284 (430)
....+++|+.++++++ .++.+.. + ..+++|++|+++++ .++.++ .+..+++|+.|++++
T Consensus 151 --------~~~~l~~L~~l~l~~n-~l~~i~~--l---~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 151 --------VLSRLTKLDTLSLEDN-QISDIVP--L---AGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp --------GGGGCTTCSEEECCSS-CCCCCGG--G---TTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE
T ss_pred --------cccccccccccccccc-ccccccc--c---cCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEccC
Confidence 1234567777777765 4444321 2 56677777777775 455554 466777777777753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.24 E-value=6.5e-11 Score=101.78 Aligned_cols=163 Identities=17% Similarity=0.244 Sum_probs=116.2
Q ss_pred HhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccc
Q 014145 102 RCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMET 181 (430)
Q Consensus 102 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 181 (430)
..++++++|++++| .+..+ .++ ..+++|++|+++++ .+..++. +..+++|++|.+.++. +..
T Consensus 37 ~~l~~l~~L~l~~~-~i~~l----------~~l-~~l~nL~~L~Ls~N-~l~~~~~----l~~l~~L~~L~l~~n~-~~~ 98 (199)
T d2omxa2 37 TDLDQVTTLQADRL-GIKSI----------DGV-EYLNNLTQINFSNN-QLTDITP----LKNLTKLVDILMNNNQ-IAD 98 (199)
T ss_dssp HHHTTCCEEECTTS-CCCCC----------TTG-GGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSSC-CCC
T ss_pred HHhcCCCEEECCCC-CCCCc----------ccc-ccCCCcCcCccccc-cccCccc----ccCCcccccccccccc-ccc
Confidence 35788999999988 45554 343 67899999999986 5655543 6678888888887765 221
Q ss_pred ccCCCceEEEecCCCCCcccCCCceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecC
Q 014145 182 FISNSVVHVTTDNKEPEKLTSEENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISEC 261 (430)
Q Consensus 182 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c 261 (430)
+ .....+++|+.|+++++.. ... ..+ ..+++|+.|+++++
T Consensus 99 ~----------------------------------~~l~~l~~L~~L~l~~~~~-~~~--~~~---~~l~~L~~L~l~~n 138 (199)
T d2omxa2 99 I----------------------------------TPLANLTNLTGLTLFNNQI-TDI--DPL---KNLTNLNRLELSSN 138 (199)
T ss_dssp C----------------------------------GGGTTCTTCSEEECCSSCC-CCC--GGG---TTCTTCSEEECCSS
T ss_pred c----------------------------------ccccccccccccccccccc-ccc--ccc---chhhhhHHhhhhhh
Confidence 1 1246788999999998643 332 122 67899999999987
Q ss_pred CCcccccCCcccCCCCCEEEEccCCCcccccCchhhccccccceEeeccccccchhhcccccccCCcceeecccceE
Q 014145 262 SKLQKLVTPSWHLENLATLEVSKCHGLINVLTLSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYL 338 (430)
Q Consensus 262 ~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L 338 (430)
. +..++ .+..+++|+.|++.+| .+.+++. ++.+++|++|++++++ +.++. ....+++|++|
T Consensus 139 ~-l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~---l~~l~~L~~L~ls~N~-i~~i~---------~l~~L~~L~~L 199 (199)
T d2omxa2 139 T-ISDIS-ALSGLTSLQQLNFSSN-QVTDLKP---LANLTTLERLDISSNK-VSDIS---------VLAKLTNLESL 199 (199)
T ss_dssp C-CCCCG-GGTTCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCCCG---------GGGGCTTCSEE
T ss_pred h-hcccc-cccccccccccccccc-cccCCcc---ccCCCCCCEEECCCCC-CCCCc---------cccCCCCCCcC
Confidence 4 55554 4678899999999987 5666653 6789999999999984 66553 11236677665
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.20 E-value=1e-09 Score=102.01 Aligned_cols=282 Identities=19% Similarity=0.140 Sum_probs=163.5
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.++.+|+ ..++|++|+++++. ++.++ ..+.+|+.|+++++ .+..+... .++|++|++++| .+
T Consensus 49 ~L~~lp~---~~~~L~~L~Ls~N~-l~~lp-------~~~~~L~~L~l~~n-~l~~l~~l-----p~~L~~L~L~~n-~l 110 (353)
T d1jl5a_ 49 GLSSLPE---LPPHLESLVASCNS-LTELP-------ELPQSLKSLLVDNN-NLKALSDL-----PPLLEYLGVSNN-QL 110 (353)
T ss_dssp CCSCCCS---CCTTCSEEECCSSC-CSSCC-------CCCTTCCEEECCSS-CCSCCCSC-----CTTCCEEECCSS-CC
T ss_pred CCCCCCC---CCCCCCEEECCCCC-Ccccc-------cchhhhhhhhhhhc-ccchhhhh-----cccccccccccc-cc
Confidence 3445554 24799999999765 77532 24578999999986 34443221 246999999998 46
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc---CCCceEEEecCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI---SNSVVHVTTDNK 195 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~---~~~L~~L~l~~~ 195 (430)
..+ |. ...+++|++|++.++. +...+ ...+.+..+.+..+....... ...++.+.+.++
T Consensus 111 ~~l---------p~--~~~l~~L~~L~l~~~~-~~~~~------~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n 172 (353)
T d1jl5a_ 111 EKL---------PE--LQNSSFLKIIDVDNNS-LKKLP------DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 172 (353)
T ss_dssp SSC---------CC--CTTCTTCCEEECCSSC-CSCCC------CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred ccc---------cc--hhhhccceeecccccc-ccccc------cccccccchhhccccccccccccccccceecccccc
Confidence 665 32 3678999999998864 33332 234566666665554332221 456677777776
Q ss_pred CCCcccCC----CceeeecCcccccccCCCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcccccCCc
Q 014145 196 EPEKLTSE----ENFFLTDQIQPLFDEKVAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLVTPS 271 (430)
Q Consensus 196 ~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l 271 (430)
....+... ..+...+.....+.....++.|+.++++++. ...+. ....++..+.+...... ..+.
T Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~-------~~~~~l~~~~~~~~~~~-~~~~-- 241 (353)
T d1jl5a_ 173 SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNL-LKTLP-------DLPPSLEALNVRDNYLT-DLPE-- 241 (353)
T ss_dssp CCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCC-------SCCTTCCEEECCSSCCS-CCCC--
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-ccccc-------ccccccccccccccccc-cccc--
Confidence 65443321 1111111122233345667889999988753 22222 33455666666554221 1111
Q ss_pred ccCCCCCEEEEccC--CCcccccC------------chhhccccccceEeeccccccchhhcccccccCCcceeecccce
Q 014145 272 WHLENLATLEVSKC--HGLINVLT------------LSTSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGY 337 (430)
Q Consensus 272 ~~l~~L~~L~l~~c--~~l~~l~~------------~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~ 337 (430)
....+...++... ..+..++. ......+++|++|++++|. +..++. .+++|++
T Consensus 242 -~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~-----------~~~~L~~ 308 (353)
T d1jl5a_ 242 -LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPA-----------LPPRLER 308 (353)
T ss_dssp -CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCC-----------CCTTCCE
T ss_pred -ccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCc-cCcccc-----------ccCCCCE
Confidence 1112222221110 00000000 0012335789999999874 555531 2789999
Q ss_pred EeccCCCCCceeccCCcccCCCCccEEeeccCCCCcccCCCCcCCCCceeeec
Q 014145 338 LGLDCLPSLTSFCLGNYALEFPSLEHVVVRQCPTMKIFSQGVVDAPKLNKVKP 390 (430)
Q Consensus 338 L~l~~c~~L~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~l~l 390 (430)
|++.++ .+++++. . +++|++|++++|+ ++.+|.. +.+|+.|.+
T Consensus 309 L~L~~N-~L~~l~~---~--~~~L~~L~L~~N~-L~~lp~~---~~~L~~L~~ 351 (353)
T d1jl5a_ 309 LIASFN-HLAEVPE---L--PQNLKQLHVEYNP-LREFPDI---PESVEDLRM 351 (353)
T ss_dssp EECCSS-CCSCCCC---C--CTTCCEEECCSSC-CSSCCCC---CTTCCEEEC
T ss_pred EECCCC-cCCcccc---c--cCCCCEEECcCCc-CCCCCcc---ccccCeeEC
Confidence 999886 6888764 1 5789999999986 8888863 457787776
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=6.5e-09 Score=85.74 Aligned_cols=108 Identities=19% Similarity=0.238 Sum_probs=65.6
Q ss_pred CCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEeccccccc
Q 014145 49 GFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELN 128 (430)
Q Consensus 49 ~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 128 (430)
...++++|+++++. +..++... ..+++|+.|+++++ .+.++.. +..+++|++|++++| .+..+
T Consensus 16 n~~~lr~L~L~~n~-I~~i~~~~----~~l~~L~~L~Ls~N-~i~~l~~---~~~l~~L~~L~ls~N-~i~~l------- 78 (162)
T d1a9na_ 16 NAVRDRELDLRGYK-IPVIENLG----ATLDQFDAIDFSDN-EIRKLDG---FPLLRRLKTLLVNNN-RICRI------- 78 (162)
T ss_dssp CTTSCEEEECTTSC-CCSCCCGG----GGTTCCSEEECCSS-CCCEECC---CCCCSSCCEEECCSS-CCCEE-------
T ss_pred CcCcCcEEECCCCC-CCccCccc----cccccCCEEECCCC-CCCccCC---cccCcchhhhhcccc-cccCC-------
Confidence 45567778877766 65543222 35677777777776 3554322 456777777777777 36665
Q ss_pred CCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 129 ADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 129 ~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
+.+++..+++|++|++.++ .+..++... .+..+++|++|++.+|+
T Consensus 79 --~~~~~~~l~~L~~L~L~~N-~i~~~~~l~-~l~~l~~L~~L~l~~N~ 123 (162)
T d1a9na_ 79 --GEGLDQALPDLTELILTNN-SLVELGDLD-PLASLKSLTYLCILRNP 123 (162)
T ss_dssp --CSCHHHHCTTCCEEECCSC-CCCCGGGGG-GGGGCTTCCEEECCSSG
T ss_pred --Cccccccccccccceeccc-ccccccccc-ccccccccchhhcCCCc
Confidence 4444456777777777775 343333211 14566777777776665
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=3.2e-08 Score=81.47 Aligned_cols=83 Identities=18% Similarity=0.200 Sum_probs=43.7
Q ss_pred CCCCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCccccc--CCcccCCCCCEEEEccCCCcccccC--ch
Q 014145 220 VAFPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQKLV--TPSWHLENLATLEVSKCHGLINVLT--LS 295 (430)
Q Consensus 220 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~l~~--~~ 295 (430)
..+++|++|+++++ .++.+....+ ..+++|+.|+++++. +..++ ..+..+++|++|++++|+ +...+. ..
T Consensus 60 ~~l~~L~~L~ls~N-~i~~l~~~~~---~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~ 133 (162)
T d1a9na_ 60 PLLRRLKTLLVNNN-RICRIGEGLD---QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLY 133 (162)
T ss_dssp CCCSSCCEEECCSS-CCCEECSCHH---HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHH
T ss_pred ccCcchhhhhcccc-cccCCCcccc---ccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHH
Confidence 45566777777664 4555544333 456667777766653 33332 234456666666666653 333332 11
Q ss_pred hhccccccceEee
Q 014145 296 TSESLVNLGRMKI 308 (430)
Q Consensus 296 ~~~~l~~L~~L~l 308 (430)
.+..+|+|++||-
T Consensus 134 ~i~~lp~L~~LD~ 146 (162)
T d1a9na_ 134 VIYKVPQVRVLDF 146 (162)
T ss_dssp HHHHCTTCSEETT
T ss_pred HHHHCCCcCeeCC
Confidence 2345566666553
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.66 E-value=3.8e-08 Score=83.45 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=84.8
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.++++|.++ .+++++|+++++. +....... ....+++|+.|+++++. +..++ ...+..+++|++|++++| .+
T Consensus 19 ~L~~iP~~l--p~~l~~L~Ls~N~-i~~~~~~~--~f~~l~~L~~L~L~~N~-i~~~~-~~~~~~~~~L~~L~Ls~N-~l 90 (192)
T d1w8aa_ 19 GLKEIPRDI--PLHTTELLLNDNE-LGRISSDG--LFGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQELQLGEN-KI 90 (192)
T ss_dssp CCSSCCSCC--CTTCSEEECCSCC-CCSBCCSC--SGGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSC-CC
T ss_pred CcCccCCCC--CCCCCEEEeCCCC-Cccccccc--ccCCCceEeeeeccccc-ccccc-ccccccccccceeeeccc-cc
Confidence 356677665 3689999999886 54311111 12468899999998863 44433 344778899999999998 67
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
..+ +.+.+.++++|++|+++++ .+..++.. ....+++|++|.+.+++
T Consensus 91 ~~l---------~~~~F~~l~~L~~L~L~~N-~l~~i~~~--~f~~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 91 KEI---------SNKMFLGLHQLKTLNLYDN-QISCVMPG--SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEE---------CSSSSTTCTTCCEEECCSS-CCCEECTT--SSTTCTTCCEEECTTCC
T ss_pred ccc---------CHHHHhCCCcccccccCCc-cccccCHH--HhcCCcccccccccccc
Confidence 777 6666788999999999985 67767543 25677888888887765
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=7.1e-08 Score=75.50 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=6.8
Q ss_pred HhcCCCCEEEEecC
Q 014145 102 RCLNNLRWLEVRNC 115 (430)
Q Consensus 102 ~~l~~L~~L~l~~~ 115 (430)
+++++|++|++++|
T Consensus 17 ~~l~~L~~L~ls~N 30 (124)
T d1dcea3 17 EQLLLVTHLDLSHN 30 (124)
T ss_dssp GGGTTCCEEECCSS
T ss_pred ccCCCCCEEECCCC
Confidence 34445555555544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.60 E-value=8.7e-08 Score=74.96 Aligned_cols=101 Identities=22% Similarity=0.334 Sum_probs=62.7
Q ss_pred ceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccC
Q 014145 54 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 133 (430)
Q Consensus 54 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 133 (430)
|.|+++++. ++.+. +. +.+++|++|+++++ .+.++++ . +..+++|++|++++| .++.+ | +
T Consensus 1 R~L~Ls~n~-l~~l~-~l----~~l~~L~~L~ls~N-~l~~lp~-~-~~~l~~L~~L~l~~N-~i~~l---------~-~ 60 (124)
T d1dcea3 1 RVLHLAHKD-LTVLC-HL----EQLLLVTHLDLSHN-RLRALPP-A-LAALRCLEVLQASDN-ALENV---------D-G 60 (124)
T ss_dssp SEEECTTSC-CSSCC-CG----GGGTTCCEEECCSS-CCCCCCG-G-GGGCTTCCEEECCSS-CCCCC---------G-G
T ss_pred CEEEcCCCC-CCCCc-cc----ccCCCCCEEECCCC-ccCcchh-h-hhhhhcccccccccc-ccccc---------C-c
Confidence 456777665 55432 12 46778888888775 4555433 3 567888888888887 45554 2 3
Q ss_pred cCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 134 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 134 l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
+ ..+++|++|+++++ .+..++.... ...+++|++|++.+++
T Consensus 61 ~-~~l~~L~~L~l~~N-~i~~~~~~~~-l~~~~~L~~L~l~~N~ 101 (124)
T d1dcea3 61 V-ANLPRLQELLLCNN-RLQQSAAIQP-LVSCPRLVLLNLQGNS 101 (124)
T ss_dssp G-TTCSSCCEEECCSS-CCCSSSTTGG-GGGCTTCCEEECTTSG
T ss_pred c-ccccccCeEECCCC-ccCCCCCchh-hcCCCCCCEEECCCCc
Confidence 3 67778888888774 4444443222 5567777777776654
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.52 E-value=3.4e-07 Score=77.36 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=72.8
Q ss_pred ceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccC
Q 014145 54 KYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEH 133 (430)
Q Consensus 54 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~ 133 (430)
+.++.++.. ++.+ |.+-.+++++|++++. .+....+...+.++++|++|++++|. +..+ +.+
T Consensus 11 ~~v~Cs~~~-L~~i------P~~lp~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~---------~~~ 72 (192)
T d1w8aa_ 11 TTVDCTGRG-LKEI------PRDIPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGI---------EPN 72 (192)
T ss_dssp TEEECTTSC-CSSC------CSCCCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCB---------CTT
T ss_pred CEEEEeCCC-cCcc------CCCCCCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-cccc---------ccc
Confidence 345555443 5543 3333478999999986 35444444557889999999999884 5554 455
Q ss_pred cCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCCCccccc
Q 014145 134 IGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCPDMETFI 183 (430)
Q Consensus 134 l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 183 (430)
.+..+++|++|+++++ .+..++.. .+..+++|++|++.++. ++.++
T Consensus 73 ~~~~~~~L~~L~Ls~N-~l~~l~~~--~F~~l~~L~~L~L~~N~-l~~i~ 118 (192)
T d1w8aa_ 73 AFEGASHIQELQLGEN-KIKEISNK--MFLGLHQLKTLNLYDNQ-ISCVM 118 (192)
T ss_dssp TTTTCTTCCEEECCSC-CCCEECSS--SSTTCTTCCEEECCSSC-CCEEC
T ss_pred ccccccccceeeeccc-cccccCHH--HHhCCCcccccccCCcc-ccccC
Confidence 5678899999999985 66666543 25678888888888765 55443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=3.9e-08 Score=94.26 Aligned_cols=187 Identities=15% Similarity=0.049 Sum_probs=90.8
Q ss_pred CCCCCEEecccCCCceeeccCCchhhhhcccccEEEeecCCCcc----cccCCcc-cCCCCCEEEEccCCCcccccCch-
Q 014145 222 FPQLRYLELSRLHKVQHLWKENDESNKAFANLIRLKISECSKLQ----KLVTPSW-HLENLATLEVSKCHGLINVLTLS- 295 (430)
Q Consensus 222 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~----~l~~~l~-~l~~L~~L~l~~c~~l~~l~~~~- 295 (430)
...++.++++++.-...............+.++.+++++++.-. .+...+. ..+.|+.+++++|. +.......
T Consensus 254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~l 332 (460)
T d1z7xw1 254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF 332 (460)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccc-hhhhhhhhc
Confidence 44666666666422111100111111345667777776653221 1111111 33578888888774 33221111
Q ss_pred --hhccccccceEeeccccccchhhcccccccCCcc-eeecccceEeccCCCCCceeccC---CcccCCCCccEEeeccC
Q 014145 296 --TSESLVNLGRMKIADCKMIEQIIQLQVGEEAKGC-VVFEELGYLGLDCLPSLTSFCLG---NYALEFPSLEHVVVRQC 369 (430)
Q Consensus 296 --~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~l~~c 369 (430)
.....++|++|+++++. +.+.... ...... ...+.|++|++++| .+++.... .....+++|++|+++++
T Consensus 333 ~~~~~~~~~L~~L~Ls~N~-i~~~g~~---~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N 407 (460)
T d1z7xw1 333 SSVLAQNRFLLELQISNNR-LEDAGVR---ELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 407 (460)
T ss_dssp HHHHHHCSSCCEEECCSSB-CHHHHHH---HHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred ccccccccchhhhheeeec-ccCcccc---hhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC
Confidence 12344678889888764 3321100 000000 11456888999888 56542211 11223688999999876
Q ss_pred CCCcc-----cCCCCc-CCCCceeeeccccCCCCCcccccCchhHHHHHHHHHhhcccc
Q 014145 370 PTMKI-----FSQGVV-DAPKLNKVKPTEEEDGDDEGCWEGNLNDTIKKLFNEMNSKEK 422 (430)
Q Consensus 370 ~~l~~-----~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 422 (430)
.++. +..... ....|+.+.+.+.. |.......+..+.....+++.
T Consensus 408 -~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~-------~~~~~~~~l~~l~~~~~~l~~ 458 (460)
T d1z7xw1 408 -CLGDAGILQLVESVRQPGCLLEQLVLYDIY-------WSEEMEDRLQALEKDKPSLRV 458 (460)
T ss_dssp -SCCHHHHHHHHHHHTSTTCCCCEEECTTCC-------CCHHHHHHHHHHHHHCTTSEE
T ss_pred -cCCHHHHHHHHHHHHhCCCccCEEECCCCC-------CCHHHHHHHHHHHHhCCCCEE
Confidence 4432 111111 33468888885432 333334566666665555543
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.19 E-value=4.1e-08 Score=83.66 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=39.9
Q ss_pred CCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCccccccc
Q 014145 76 SFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRF 155 (430)
Q Consensus 76 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~ 155 (430)
..+++|++|+++++ ++..+.+ +.++++|++|++++| .+..+ + .+...+++|+.|++.++ .+..+
T Consensus 45 ~~L~~L~~L~Ls~n-~I~~i~~---l~~l~~L~~L~Ls~N-~i~~i---------~-~~~~~~~~L~~L~l~~N-~i~~l 108 (198)
T d1m9la_ 45 STLKACKHLALSTN-NIEKISS---LSGMENLRILSLGRN-LIKKI---------E-NLDAVADTLEELWISYN-QIASL 108 (198)
T ss_dssp HHTTTCCEEECSEE-EESCCCC---HHHHTTCCEEECCEE-EECSC---------S-SHHHHHHHCCEEECSEE-ECCCH
T ss_pred hcccccceeECccc-CCCCccc---ccCCccccChhhccc-ccccc---------c-ccccccccccccccccc-ccccc
Confidence 34566666666665 3444321 455666666666665 23333 1 11233345666666554 33333
Q ss_pred cCCccccccCCCccEEEeccC
Q 014145 156 CNFTENIIEMPELRYLAIENC 176 (430)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~c 176 (430)
+. +..+++|++|++.++
T Consensus 109 ~~----~~~l~~L~~L~L~~N 125 (198)
T d1m9la_ 109 SG----IEKLVNLRVLYMSNN 125 (198)
T ss_dssp HH----HHHHHHSSEEEESEE
T ss_pred cc----ccccccccccccccc
Confidence 21 344555555555544
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=3e-06 Score=68.72 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=6.6
Q ss_pred HHhcCCCCEEEEecC
Q 014145 101 IRCLNNLRWLEVRNC 115 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~ 115 (430)
+.++++|++|++++|
T Consensus 52 f~~l~~L~~L~Ls~N 66 (156)
T d2ifga3 52 LRGLGELRNLTIVKS 66 (156)
T ss_dssp SCSCCCCSEEECCSS
T ss_pred hccccccCcceeecc
Confidence 333444444444444
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.15 E-value=9.3e-07 Score=81.72 Aligned_cols=104 Identities=10% Similarity=-0.006 Sum_probs=57.3
Q ss_pred hhhhhhcccCCCCcceeecccccCCeee-ccCCCCCCCCCCCcceEEEeCCCCC--CccCchh------HHHhcCCCCEE
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNM--LSAIPAN------LIRCLNNLRWL 110 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l--~~~~~~~------~~~~l~~L~~L 110 (430)
+..+...+.....|+.|+++++. +... +....-.....++|+.|+++++..- ....+.. .+..+++|++|
T Consensus 20 ~~~l~~~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L 98 (344)
T d2ca6a1 20 EKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 98 (344)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHHHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccc
Confidence 44455556667889999998765 4321 0000001145788999999876421 1111111 24457889999
Q ss_pred EEecCCCccEecccccccCCccCcCCcCCccceeecCCcc
Q 014145 111 EVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLP 150 (430)
Q Consensus 111 ~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~ 150 (430)
++++|. +... ++...... ....++|++|+++++.
T Consensus 99 ~L~~n~-i~~~----~~~~l~~~-l~~~~~L~~L~l~~n~ 132 (344)
T d2ca6a1 99 RLSDNA-FGPT----AQEPLIDF-LSKHTPLEHLYLHNNG 132 (344)
T ss_dssp ECCSCC-CCTT----THHHHHHH-HHHCTTCCEEECCSSC
T ss_pred cccccc-cccc----cccchhhh-hcccccchheeccccc
Confidence 998873 3221 11111111 2456788888888764
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2.9e-06 Score=68.87 Aligned_cols=95 Identities=19% Similarity=0.188 Sum_probs=71.7
Q ss_pred hhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCcc
Q 014145 40 IQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSLE 119 (430)
Q Consensus 40 ~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~ 119 (430)
+.+.|..+..+++|++|++.+.+.++.+.... + ..+++|+.|+++++ ++..+.+. .+.++++|++|++++| .++
T Consensus 20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~-f--~~l~~L~~L~Ls~N-~l~~i~~~-~f~~l~~L~~L~Ls~N-~l~ 93 (156)
T d2ifga3 20 ALDSLHHLPGAENLTELYIENQQHLQHLELRD-L--RGLGELRNLTIVKS-GLRFVAPD-AFHFTPRLSRLNLSFN-ALE 93 (156)
T ss_dssp CCTTTTTSCSCSCCSEEECCSCSSCCEECGGG-S--CSCCCCSEEECCSS-CCCEECTT-GGGSCSCCCEEECCSS-CCS
T ss_pred CccCcccccCccccCeeecCCCccccccCchh-h--ccccccCcceeecc-ccCCcccc-cccccccccceeccCC-CCc
Confidence 34556667788999999998777688765443 2 56899999999997 57765554 4788999999999998 466
Q ss_pred EecccccccCCccCcCCcCCccceeecCCcc
Q 014145 120 EVLHLEELNADKEHIGPLFPKLFELTLMDLP 150 (430)
Q Consensus 120 ~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~ 150 (430)
.+ |.+++..+ +|+.|++++.+
T Consensus 94 ~l---------~~~~~~~~-~l~~L~L~~Np 114 (156)
T d2ifga3 94 SL---------SWKTVQGL-SLQELVLSGNP 114 (156)
T ss_dssp CC---------CSTTTCSC-CCCEEECCSSC
T ss_pred cc---------Chhhhccc-cccccccCCCc
Confidence 66 56654443 68889988753
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.12 E-value=2.5e-08 Score=85.02 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=83.9
Q ss_pred hhhhhhhcccCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCCCc
Q 014145 39 TIQKCYEEMIGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCDSL 118 (430)
Q Consensus 39 ~~~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~~l 118 (430)
.+..++..+..+++|++|+++++. ++.+. +. ..+++|+.|++++| .+..+++. ...+++|++|++++| .+
T Consensus 36 ~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l----~~l~~L~~L~Ls~N-~i~~i~~~--~~~~~~L~~L~l~~N-~i 105 (198)
T d1m9la_ 36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SL----SGMENLRILSLGRN-LIKKIENL--DAVADTLEELWISYN-QI 105 (198)
T ss_dssp TCCCCHHHHHHTTTCCEEECSEEE-ESCCC-CH----HHHTTCCEEECCEE-EECSCSSH--HHHHHHCCEEECSEE-EC
T ss_pred chhhhhhHHhcccccceeECcccC-CCCcc-cc----cCCccccChhhccc-cccccccc--ccccccccccccccc-cc
Confidence 355566677789999999999876 66542 22 57899999999998 46654432 455678999999998 56
Q ss_pred cEecccccccCCccCcCCcCCccceeecCCccccccccCCccccccCCCccEEEeccCC
Q 014145 119 EEVLHLEELNADKEHIGPLFPKLFELTLMDLPKLKRFCNFTENIIEMPELRYLAIENCP 177 (430)
Q Consensus 119 ~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~c~ 177 (430)
+.+ .++ ..+++|+.|+++++ .+..++... .+..+++|++|.+.+++
T Consensus 106 ~~l----------~~~-~~l~~L~~L~L~~N-~i~~~~~~~-~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 106 ASL----------SGI-EKLVNLRVLYMSNN-KITNWGEID-KLAALDKLEDLLLAGNP 151 (198)
T ss_dssp CCH----------HHH-HHHHHSSEEEESEE-ECCCHHHHH-HHTTTTTCSEEEECSSH
T ss_pred ccc----------ccc-cccccccccccccc-hhccccccc-cccCCCccceeecCCCc
Confidence 555 222 67899999999986 444443211 15678999999998876
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=1e-07 Score=91.24 Aligned_cols=324 Identities=16% Similarity=0.121 Sum_probs=161.8
Q ss_pred CCcceeecccccCCeee-ccCCCCCCCCCCCcceEEEeCCCCCCccCc---hhHHHhcCCCCEEEEecCCCccEeccccc
Q 014145 51 RDIKYLQLGHFPRLQEI-WHGQALPVSFFNNLRHLVVDDCTNMLSAIP---ANLIRCLNNLRWLEVRNCDSLEEVLHLEE 126 (430)
Q Consensus 51 ~~L~~L~l~~~~~l~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 126 (430)
++|+.|++++.. +.+. |... + ..+++++.|++++|. ++.... ...++.+++|++|++++|. ++.. +
T Consensus 2 ~~l~~ld~~~~~-i~~~~~~~l-~--~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~----~ 71 (460)
T d1z7xw1 2 LDIQSLDIQCEE-LSDARWAEL-L--PLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDV----G 71 (460)
T ss_dssp EEEEEEEEESCC-CCHHHHHHH-H--HHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHH----H
T ss_pred CCCCEEEeeCCc-CChHHHHHH-H--HhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChH----H
Confidence 478999998665 6542 1111 1 358899999999994 553211 1235789999999999984 5322 1
Q ss_pred ccCCccCcCCcCCccceeecCCccccccccCC--ccccccCCCccEEEeccCCCccccc---------------------
Q 014145 127 LNADKEHIGPLFPKLFELTLMDLPKLKRFCNF--TENIIEMPELRYLAIENCPDMETFI--------------------- 183 (430)
Q Consensus 127 ~~~~~~~l~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~~~~~L~~L~l~~c~~l~~~~--------------------- 183 (430)
+......+....++|++|++++|. +...... ...+..+++|++|++.++. +...+
T Consensus 72 ~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~-i~~~~~~~l~~~l~~~~~~~~~~~~~ 149 (460)
T d1z7xw1 72 VHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLE 149 (460)
T ss_dssp HHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccccccc-chhhhhhhhhhccccccccccccccc
Confidence 111122332334689999999985 4332100 0114578899999998875 33211
Q ss_pred ------------------CCCceEEEecCCCCCccc-------------CCCceeeecC------cccccccCCCCCCCC
Q 014145 184 ------------------SNSVVHVTTDNKEPEKLT-------------SEENFFLTDQ------IQPLFDEKVAFPQLR 226 (430)
Q Consensus 184 ------------------~~~L~~L~l~~~~~~~~~-------------~~~~l~~~~~------~~~~~~~~~~~~~L~ 226 (430)
...++.+.++++...... ....+...+. ...........+.++
T Consensus 150 ~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (460)
T d1z7xw1 150 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 229 (460)
T ss_dssp TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred ccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 012223333322211000 0000000000 000111112234556
Q ss_pred EEecccCCCceeeccCC-chhhhhcccccEEEeecCCCccc----ccCCcccCCCCCEEEEccCCCcccccCch----hh
Q 014145 227 YLELSRLHKVQHLWKEN-DESNKAFANLIRLKISECSKLQK----LVTPSWHLENLATLEVSKCHGLINVLTLS----TS 297 (430)
Q Consensus 227 ~L~l~~~~~l~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~----l~~~l~~l~~L~~L~l~~c~~l~~l~~~~----~~ 297 (430)
.+.+.++.......... .........++.++++++..... ....+...+.++.+++++++ +.+..... ..
T Consensus 230 ~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l~~~l~ 308 (460)
T d1z7xw1 230 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLL 308 (460)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHT
T ss_pred ccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccccc-ccccccchhhcccc
Confidence 66665532111000000 00003345677777777643221 11223456677777777653 33211110 11
Q ss_pred ccccccceEeeccccccchhhcccccccCCcceeecccceEeccCCCCCceeccCC---c-ccCCCCccEEeeccCCCCc
Q 014145 298 ESLVNLGRMKIADCKMIEQIIQLQVGEEAKGCVVFEELGYLGLDCLPSLTSFCLGN---Y-ALEFPSLEHVVVRQCPTMK 373 (430)
Q Consensus 298 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~---~-~~~~~~L~~L~l~~c~~l~ 373 (430)
.....|+.+++++|..-..-. ..........++|++|+++++ .+++-.... . ....+.|++|++.+| .++
T Consensus 309 ~~~~~L~~l~l~~~~l~~~~~----~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~ 382 (460)
T d1z7xw1 309 EPGCQLESLWVKSCSFTAACC----SHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 382 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGH----HHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred ccccccccccccccchhhhhh----hhcccccccccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCC-CCC
Confidence 223568888888774322111 000001122567999999986 454321100 0 113567999999999 454
Q ss_pred c-----cCCCCcCCCCceeeecccc
Q 014145 374 I-----FSQGVVDAPKLNKVKPTEE 393 (430)
Q Consensus 374 ~-----~~~~~~~~~~L~~l~l~~~ 393 (430)
. ++..+...++|++|++.++
T Consensus 383 ~~~~~~l~~~l~~~~~L~~L~Ls~N 407 (460)
T d1z7xw1 383 DSSCSSLAATLLANHSLRELDLSNN 407 (460)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred hHHHHHHHHHHhcCCCCCEEECCCC
Confidence 3 3334456789999999654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=97.95 E-value=1.1e-06 Score=81.29 Aligned_cols=71 Identities=8% Similarity=-0.008 Sum_probs=36.2
Q ss_pred HHhcCCCCEEEEecCCCccEecccccccCCccCcCCcCCccceeecCCcccc--ccc-cCC----ccccccCCCccEEEe
Q 014145 101 IRCLNNLRWLEVRNCDSLEEVLHLEELNADKEHIGPLFPKLFELTLMDLPKL--KRF-CNF----TENIIEMPELRYLAI 173 (430)
Q Consensus 101 ~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~l~~~l~~L~~L~l~~~~~l--~~~-~~~----~~~~~~~~~L~~L~l 173 (430)
+....+|++|++++|. +... +....... ....++|+.+++.++..- ... +.. ...+..+++|++|++
T Consensus 27 L~~~~~l~~L~Ls~n~-i~~~----~~~~l~~~-l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L 100 (344)
T d2ca6a1 27 LLEDDSVKEIVLSGNT-IGTE----AARWLSEN-IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100 (344)
T ss_dssp HHHCSCCCEEECTTSE-ECHH----HHHHHHHT-TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HhhCCCCCEEECcCCc-CCHH----HHHHHHHH-HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence 5667888888888773 3211 11111112 255678888887765311 000 000 001334667777777
Q ss_pred ccCC
Q 014145 174 ENCP 177 (430)
Q Consensus 174 ~~c~ 177 (430)
.+|.
T Consensus 101 ~~n~ 104 (344)
T d2ca6a1 101 SDNA 104 (344)
T ss_dssp CSCC
T ss_pred cccc
Confidence 7664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.67 E-value=0.0015 Score=52.52 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=18.0
Q ss_pred CCCcceEEEeCCCCCCccCc-hhHHHhcCCCCEEEEecC
Q 014145 78 FNNLRHLVVDDCTNMLSAIP-ANLIRCLNNLRWLEVRNC 115 (430)
Q Consensus 78 l~~L~~L~l~~c~~l~~~~~-~~~~~~l~~L~~L~l~~~ 115 (430)
+++|++|+++++ .+..+.+ ...++.+++|+.|++++|
T Consensus 64 ~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N 101 (162)
T d1koha1 64 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN 101 (162)
T ss_dssp CTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS
T ss_pred CCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC
Confidence 455555555554 2333322 123445555555555555
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0026 Score=50.98 Aligned_cols=65 Identities=17% Similarity=0.007 Sum_probs=45.3
Q ss_pred cCCCCcceeecccccCCeeeccCCCCCCCCCCCcceEEEeCCCCCCccCchhHHHhcCCCCEEEEecCC
Q 014145 48 IGFRDIKYLQLGHFPRLQEIWHGQALPVSFFNNLRHLVVDDCTNMLSAIPANLIRCLNNLRWLEVRNCD 116 (430)
Q Consensus 48 ~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~~~ 116 (430)
..+++|++|+++++. ++.+.... .....+++|+.|+++++ .+.++.....+ ...+|++|++++|+
T Consensus 62 ~~~~~L~~L~Ls~N~-i~~l~~~~-~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l-~~~~L~~L~L~~Np 126 (162)
T d1koha1 62 ENIPELLSLNLSNNR-LYRLDDMS-SIVQKAPNLKILNLSGN-ELKSERELDKI-KGLKLEELWLDGNS 126 (162)
T ss_dssp HHCTTCCCCCCCSSC-CCCCSGGG-THHHHSTTCCCCCCTTS-CCCCGGGHHHH-TTCCCSSCCCTTST
T ss_pred HhCCCCCEeeCCCcc-ccCCchhH-HHHhhCCcccccccccC-ccccchhhhhh-hccccceeecCCCC
Confidence 368999999999887 76542211 01145899999999996 45554444433 34579999999985
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=93.14 E-value=0.031 Score=44.56 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=8.3
Q ss_pred hcCCCCEEEEecCC
Q 014145 103 CLNNLRWLEVRNCD 116 (430)
Q Consensus 103 ~l~~L~~L~l~~~~ 116 (430)
+.++|++|+++++.
T Consensus 13 n~~~L~~L~L~~~~ 26 (167)
T d1pgva_ 13 DDTDLKEVNINNMK 26 (167)
T ss_dssp TCSSCCEEECTTCC
T ss_pred CCCCCcEEEeCCCC
Confidence 44666666666543
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.61 E-value=0.021 Score=45.64 Aligned_cols=66 Identities=6% Similarity=0.022 Sum_probs=35.3
Q ss_pred CCCCCCCCEEecccCCCceeeccCCch-hhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccC
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKENDE-SNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKC 285 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c 285 (430)
....+.|++|+++++ .+.......++ .....++|++|++++|..-. .+...+...+.|++|+++++
T Consensus 40 L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 40 ACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence 445567777777765 34332222221 11345677777777764322 12233445567777777654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=90.84 E-value=0.038 Score=43.83 Aligned_cols=91 Identities=13% Similarity=-0.019 Sum_probs=44.2
Q ss_pred CCCCCCCCEEecccCCCceeeccCCc-hhhhhcccccEEEeecCCCcc----cccCCcccCCCCCEEEEccCC-Cccccc
Q 014145 219 KVAFPQLRYLELSRLHKVQHLWKEND-ESNKAFANLIRLKISECSKLQ----KLVTPSWHLENLATLEVSKCH-GLINVL 292 (430)
Q Consensus 219 ~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~----~l~~~l~~l~~L~~L~l~~c~-~l~~l~ 292 (430)
....+.|++|+++++ .+.......+ ......++++.+++++|..-. .+...+...++|+.+++..+. .+.+-.
T Consensus 42 l~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~ 120 (166)
T d1io0a_ 42 LKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 120 (166)
T ss_dssp HTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred HhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence 345667777777775 3333111111 111445677777776654322 222344556677776665442 333221
Q ss_pred Cch---hhccccccceEeecc
Q 014145 293 TLS---TSESLVNLGRMKIAD 310 (430)
Q Consensus 293 ~~~---~~~~l~~L~~L~l~~ 310 (430)
... .+...+.|+.|++..
T Consensus 121 ~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 121 EMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHhCCCcCEEeCcC
Confidence 111 123456667766654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=90.18 E-value=0.035 Score=44.05 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=29.6
Q ss_pred CCCCCCEEecccCCCceeecc-CCchhhhhcccccEEEeecCC-Ccc-----cccCCcccCCCCCEEEEcc
Q 014145 221 AFPQLRYLELSRLHKVQHLWK-ENDESNKAFANLIRLKISECS-KLQ-----KLVTPSWHLENLATLEVSK 284 (430)
Q Consensus 221 ~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~l~~L~~L~l~~c~-~l~-----~l~~~l~~l~~L~~L~l~~ 284 (430)
..+.++.++++++. +..... .........++|+.++|..+. .+. .+...+...++|++|++..
T Consensus 72 ~~~~l~~l~l~~~~-~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~ 141 (166)
T d1io0a_ 72 VNNTLKSLNVESNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 141 (166)
T ss_dssp HCSSCCEEECCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred hcccchhhhhcccc-ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence 34566666666542 211100 001111445666766665432 222 2223344667788887764
|