Citrus Sinensis ID: 014157

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MFFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Secondary Structure (PSIPRED)
ccccccEEEEEEEEEEccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEEccccEEEEEccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEccccccHHHHHHHHHHccccccEEEcccccccccccEEEEEEHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHccccEEEEEcccccEEEEEEcHHHHHHHHcccccccccccccHHHHHHccccccccccccccccEEEcccccHHHHHHHHHcccccEEEEEEccccEEEEEEEHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEEEccEEEcccccccccccccEEEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccEEEEEEccHHHHHHHHHHHHcccEEcccccccccEEEEEEEHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHHHccccccccccccccEEEEcccHHHHHHHHHHHHHccccccEEccccccccccEEEEEEcHHHHHHHHHHHHHHcccccHHHcccHHHcccccEcccccccccccEEEEccccHHHHHHHHHHHHcccEcEEEccccEEEEHHHHHHHHHHHHccccccccccccEHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHccccEEEEEEEccccEEEEEEEHHHHHHHHHc
Coil and Loop (DISEMBL)
MFFYIVHYVQYKFCvdgewrhdehqpfisseyGIVNTVLlatepnfmhginqgmpsgsnmdvdnEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQgismaplwdfskarfvgvlsASDFILILRELgnhgsnlteeelETHTISAWKEGKAYLNRQIdshgkafprplvyagpndnlKDVARKILhnevatvpiihsssqdgsfpqLLHIASLSGILKCVCRYfrhcssslpilklpicaipvgtwvpkigepnrrplamlrpsASLSAALNLLVQAqvssipivddndslldiYCRSDITALAKDKAYAHINLSEMTIHQALQlgqdsyspyelrsqrcqmclpsdtLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Flexible Loop (DISEMBL)
MFFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERIseadlqvsrHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSsipivddndsLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEagskrvegivslsdIFKFLLG
Low Complexity Region (SEG)
MFFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPsaslsaalnllvqaqvsSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Disordered region (IsUnstruct)
*FFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI*******************LV*****************DLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL*
Disordered Region (DISOPRED)
MFFYIVHYVQYKFCVDGEWRHDEHQP******GI***VL******************************************************RHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Disordered Region (DISEMBL)
MFFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Disordered Region (DISPRO)
MFFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFM***********************************ERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	429	2.2.26 [Sep-21-2011]
Q944A6	487	Sucrose nonfermenting 4-l	yes	no	0.972	0.856	0.709	1e-174
Q09138	330	5'-AMP-activated protein	yes	no	0.668	0.869	0.332	6e-35
P54619	331	5'-AMP-activated protein	yes	no	0.668	0.867	0.332	6e-35
P58108	330	5'-AMP-activated protein	yes	no	0.668	0.869	0.332	6e-35
P80385	330	5'-AMP-activated protein	yes	no	0.673	0.875	0.330	8e-35
Q8T277	577	5'-AMP-activated protein	yes	no	0.694	0.516	0.315	1e-34
O54950	330	5'-AMP-activated protein	yes	no	0.664	0.863	0.333	1e-34
Q91WG5	566	5'-AMP-activated protein	no	no	0.662	0.501	0.311	1e-32
Q9UGJ0	569	5'-AMP-activated protein	no	no	0.662	0.499	0.308	8e-32
Q5R4S0	524	5'-AMP-activated protein	no	no	0.662	0.541	0.305	2e-31

>sp|Q944A6|SNF4_ARATH Sucrose nonfermenting 4-like protein OS=Arabidopsis thaliana GN=SNF4 PE=1 SV=1

 Score =  611 bits (1576), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/423 (70%), Positives = 346/423 (81%), Gaps = 6/423 (1%)

Query: 8   YVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAF 67
           Y QYKF VDGEWRHDEHQPF+S   G+VNT+ +        G +      SNMDVD + F
Sbjct: 69  YHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFITGPDMVPAGFSPETLGRSNMDVD-DVF 127

Query: 68  QRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQ 127
            R    S     EA  R+S  DL++SRHR+SV LST TAYELLPESGKV+ALD++LPVKQ
Sbjct: 128 LRTADPSQ----EAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVKQ 183

Query: 128 AFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWK 187
           AFHILYEQGI +APLWDF K +FVGVL   DFILILRELG HGSNLTEEELETHTI+AWK
Sbjct: 184 AFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAWK 243

Query: 188 EGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQL 247
           EGKA+++RQ D  G+ +PRPLV  GP DNLKDVA KIL N+VA VP+I+SS QDGS+PQL
Sbjct: 244 EGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQL 303

Query: 248 LHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASL 307
           LH+ASLSGILKC+CRYFRH SSSLPIL+ PIC+IP+GTWVP+IGE + +PLA LRP ASL
Sbjct: 304 LHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHASL 363

Query: 308 SAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 367
            +AL LLVQA+VSSIP+VDDNDSL+DIY RSDITALAKDKAYA I+L +MT+HQALQLGQ
Sbjct: 364 GSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLGQ 423

Query: 368 DSYSPYEL-RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426
           D+  PY +   QRC MCL SD+L KVMERLANPGVRRLVIVEAGSKRVEGI+SLSD+F+F
Sbjct: 424 DASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQF 483

Query: 427 LLG 429
           LLG
Sbjct: 484 LLG 486

Regulatory subunit of the probable trimeric SNF1-related protein kinase (SnRK) complex, which may play a role in a signal transduction cascade regulating gene expression and carbohydrate metabolism in higher plants.
Arabidopsis thaliana (taxid: 3702)

>sp|Q09138|AAKG1_PIG 5'-AMP-activated protein kinase subunit gamma-1 OS=Sus scrofa GN=PRKAG1 PE=1 SV=2

 Score =  149 bits (375), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 168/334 (50%), Gaps = 47/334 (14%)

Query: 100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
           F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct: 32  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 91

Query: 160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
           I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct: 92  INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 139

Query: 219 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 278
           D    ++ N++  +P+I   S +      L+I +   ILK               LKL I
Sbjct: 140 DAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKLFI 180

Query: 279 CAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDI 334
              P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+   ++DI
Sbjct: 181 TEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 335 YCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVME 394
           Y + D+  LA +K Y ++++S   + +ALQ     +       +    C   +TL  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETLETIIN 290

Query: 395 RLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Sus scrofa (taxid: 9823)

>sp|P54619|AAKG1_HUMAN 5'-AMP-activated protein kinase subunit gamma-1 OS=Homo sapiens GN=PRKAG1 PE=1 SV=1

 Score =  148 bits (374), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 168/334 (50%), Gaps = 47/334 (14%)

Query: 100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
           F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct: 32  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 91

Query: 160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
           I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct: 92  INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 139

Query: 219 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 278
           D    ++ N++  +P+I   S +      L+I +   ILK               LKL I
Sbjct: 140 DAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKLFI 180

Query: 279 CAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDI 334
              P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+   ++DI
Sbjct: 181 TEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 335 YCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVME 394
           Y + D+  LA +K Y ++++S   + +ALQ     +       +    C   +TL  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETLETIIN 290

Query: 395 RLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|P58108|AAKG1_BOVIN 5'-AMP-activated protein kinase subunit gamma-1 OS=Bos taurus GN=PRKAG1 PE=2 SV=2

 Score =  148 bits (374), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 168/334 (50%), Gaps = 47/334 (14%)

Query: 100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
           F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct: 32  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 91

Query: 160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
           I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct: 92  INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 139

Query: 219 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 278
           D    ++ N++  +P+I   S +      L+I +   ILK               LKL I
Sbjct: 140 DAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKLFI 180

Query: 279 CAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDI 334
              P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+   ++DI
Sbjct: 181 TEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDI 240

Query: 335 YCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVME 394
           Y + D+  LA +K Y ++++S   + +ALQ     +       +    C   +TL  ++ 
Sbjct: 241 YSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETLETIIN 290

Query: 395 RLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 291 RLVEAEVHRLVVVDEND-VVKGIVSLSDILQALV 323

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Bos taurus (taxid: 9913)

>sp|P80385|AAKG1_RAT 5'-AMP-activated protein kinase subunit gamma-1 OS=Rattus norvegicus GN=Prkag1 PE=1 SV=3

 Score =  148 bits (374), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 111/336 (33%), Positives = 169/336 (50%), Gaps = 47/336 (13%)

Query: 98  SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSAS 157
           + F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88

Query: 158 DFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 216
           DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNAS 136

Query: 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 276
           L D    ++ N++  +P+I   S +      L+I +   ILK               LKL
Sbjct: 137 LFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKL 177

Query: 277 PICAIPVGTWVPKIGEP----NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLL 332
            I   P   ++ K  E         +AM+R +  +  AL + VQ +VS++P+VD+   ++
Sbjct: 178 FITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVV 237

Query: 333 DIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKV 392
           DIY + D+  LA +K Y ++++S   + +ALQ     +       +    C   +TL  +
Sbjct: 238 DIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETLEAI 287

Query: 393 MERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           + RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 288 INRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Rattus norvegicus (taxid: 10116)

>sp|Q8T277|PRKAG_DICDI 5'-AMP-activated protein kinase subunit gamma OS=Dictyostelium discoideum GN=prkag PE=3 SV=3

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 168/333 (50%), Gaps = 35/333 (10%)

Query: 100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
           FL  HT Y+++P SGKVV LD  L VK AF+ L E GI  APLW+  +  F G+++ SDF
Sbjct: 270 FLKGHTCYDVIPISGKVVVLDTKLAVKSAFYALEENGIKSAPLWNSEQHDFTGMITVSDF 329

Query: 160 I-LILRELGNHGSNLTEEELETHTISA-WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNL 217
           I ++L       SN   +++  H I   W+E                P  L+   P  NL
Sbjct: 330 IDILLYYYKKPKSNNIFQDMGIHRIETFWREISV-----------ERPSSLISTEPETNL 378

Query: 218 KDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 277
            D A  +L  ++  +P++     +     +LHI + S IL  + + F      L  L +P
Sbjct: 379 YDAASLLLCYKIHRLPVVDKKDTNS----ILHILTHSRILAFMMKSFPQLPEKL--LSIP 432

Query: 278 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS-LLDIYC 336
           I ++ +GT+   +      PL            L LL + ++S++PI+D   S ++D+Y 
Sbjct: 433 IGSLGIGTFATVVTVMTHTPLV---------EVLELLSEKKISAVPIIDSETSKIVDVYS 483

Query: 337 RSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 396
           +SD+T ++K    +  +L+ + +HQ L     +++    R ++   C   D L  V+ER 
Sbjct: 484 KSDVTLMSKQGILSPSDLN-LPVHQVLS----TFTKLWQRPEQIYTCTRFDKLGDVIERC 538

Query: 397 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429
               V RLV +++ SK+VEGI+SLSDI  +LL 
Sbjct: 539 IKKRVHRLVCIDS-SKKVEGILSLSDILNYLLN 570

AMPK may be responsible for the regulation of fatty acid synthesis by phosphorylation of acetyl-CoA carboxylase.

Dictyostelium discoideum (taxid: 44689)

>sp|O54950|AAKG1_MOUSE 5'-AMP-activated protein kinase subunit gamma-1 OS=Mus musculus GN=Prkag1 PE=1 SV=2

 Score =  147 bits (371), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/336 (33%), Positives = 169/336 (50%), Gaps = 51/336 (15%)

Query: 100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
           F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct: 31  FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF 90

Query: 160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
           I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct: 91  INILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNASLF 138

Query: 219 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 278
           D    ++ N++  +P+I   S +      L+I +   ILK               LKL I
Sbjct: 139 DAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKLFI 179

Query: 279 CAIPVGTWVPK------IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLL 332
              P   ++ K      IG      +AM+R +  +  AL + VQ +VS++P+VD+   ++
Sbjct: 180 TEFPKPEFMSKSLQELQIG--TYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVV 237

Query: 333 DIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKV 392
           DIY + D+  LA +K Y ++++S   + +ALQ     +       +    C   +TL  +
Sbjct: 238 DIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETLETI 287

Query: 393 MERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           + RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 288 INRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q91WG5|AAKG2_MOUSE 5'-AMP-activated protein kinase subunit gamma-2 OS=Mus musculus GN=Prkag2 PE=1 SV=2

 Score =  141 bits (355), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 174/337 (51%), Gaps = 53/337 (15%)

Query: 100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
           F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K  FVG+L+ +DF
Sbjct: 261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 320

Query: 160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
           I IL     + S + +  ELE H I  W+E   YL            +PLV   P+ +L 
Sbjct: 321 INILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLF 368

Query: 219 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP---ILK 275
           D    ++ N++  +P+I   S +      L+I +   ILK +  +     S +P    +K
Sbjct: 369 DAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFLQLFM----SDMPKPAFMK 419

Query: 276 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY 335
             +  + +GT+           +A + P   +  ALN+ V+ ++S++P+VD++  ++DIY
Sbjct: 420 QNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIY 470

Query: 336 CRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQ---MCLPSDTLHKV 392
            + D+  LA +K Y ++++   T+ QALQ           RSQ  +    C   +TL  +
Sbjct: 471 SKFDVINLAAEKTYNNLDI---TVTQALQ----------HRSQYFEGVVKCSKLETLETI 517

Query: 393 MERLANPGVRRLVIV-EAGSKRVEGIVSLSDIFKFLL 428
           ++R+    V RLV+V EA S  + GI+SLSDI + L+
Sbjct: 518 VDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 552

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Mus musculus (taxid: 10090)

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score =  138 bits (347), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 173/337 (51%), Gaps = 53/337 (15%)

Query: 100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
           F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K  FVG+L+ +DF
Sbjct: 264 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 323

Query: 160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
           I IL     + S + +  ELE H I  W+E   YL            +PLV   P+ +L 
Sbjct: 324 INILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLF 371

Query: 219 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP---ILK 275
           D    ++ N++  +P+I   S +      L+I +   ILK +  +     S +P    +K
Sbjct: 372 DAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFLQLFM----SDMPKPAFMK 422

Query: 276 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY 335
             +  + +GT+           +A + P   +  ALN+ V+ ++S++P+VD++  ++DIY
Sbjct: 423 QNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIY 473

Query: 336 CRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQ---MCLPSDTLHKV 392
            + D+  LA +K Y ++++   T+ QALQ           RSQ  +    C   + L  +
Sbjct: 474 SKFDVINLAAEKTYNNLDI---TVTQALQ----------HRSQYFEGVVKCNKLEILETI 520

Query: 393 MERLANPGVRRLVIV-EAGSKRVEGIVSLSDIFKFLL 428
           ++R+    V RLV+V EA S  + GI+SLSDI + L+
Sbjct: 521 VDRIVRAEVHRLVVVNEADS--IVGIISLSDILQALI 555

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

>sp|Q5R4S0|AAKG2_PONAB 5'-AMP-activated protein kinase subunit gamma-2 OS=Pongo abelii GN=PRKAG2 PE=2 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 172/337 (51%), Gaps = 53/337 (15%)

Query: 100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
           F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K  FVG+L+ +DF
Sbjct: 219 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 278

Query: 160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
           I IL     + S + +  ELE H I  W+E   YL            +PLV   P+ +L 
Sbjct: 279 INILHRY--YKSPMVQIYELEEHKIETWRE--LYLQETF--------KPLVNISPDASLL 326

Query: 219 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP---ILK 275
           D    ++ N++  +P+I   S +      L+I +   ILK +  +     S +P    +K
Sbjct: 327 DAVYSLIKNKIHRLPVIDPISGNA-----LYILTHKRILKFLQLFM----SDMPKPAFMK 377

Query: 276 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY 335
             +  + +GT+           +A + P   +  ALN+ V+ ++S++P+VD++  ++DIY
Sbjct: 378 QNLDELGIGTY---------HNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIY 428

Query: 336 CRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQ---MCLPSDTLHKV 392
            + D+  LA +K Y ++++   T+ QALQ           RSQ  +    C   + L  +
Sbjct: 429 SKFDVINLAAEKTYNNLDI---TVTQALQ----------HRSQYFEGVVKCNKLEILETI 475

Query: 393 MERLANPGVRRLVIV-EAGSKRVEGIVSLSDIFKFLL 428
           ++R+    V RLV+  EA S  + GI+SLSDI + L+
Sbjct: 476 VDRIVRAEVHRLVVANEADS--IVGIISLSDILQALI 510

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
356529781	492	PREDICTED: sucrose nonfermenting 4-like	0.983	0.857	0.808	0.0
356556126	491	PREDICTED: sucrose nonfermenting 4-like	0.983	0.859	0.798	0.0
449450664	491	PREDICTED: sucrose nonfermenting 4-like	0.983	0.859	0.808	0.0
224123196	464	predicted protein [Populus trichocarpa]	0.969	0.896	0.790	0.0
225432326	491	PREDICTED: sucrose nonfermenting 4-like	0.983	0.859	0.808	0.0
224107351	447	predicted protein [Populus trichocarpa]	0.930	0.892	0.769	0.0
225450904	488	PREDICTED: sucrose nonfermenting 4-like	0.974	0.856	0.764	0.0
359487759	482	PREDICTED: sucrose nonfermenting 4-like	0.960	0.854	0.757	0.0
356563906	482	PREDICTED: sucrose nonfermenting 4-like	0.967	0.860	0.729	0.0
356519984	480	PREDICTED: sucrose nonfermenting 4-like	0.965	0.862	0.738	1e-180

>gi|356529781|ref|XP_003533466.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  724 bits (1869), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/422 (80%), Positives = 385/422 (91%)

Query: 8   YVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAF 67
           Y QYKF VDGEWRHDEHQP++  EYGIVNTVLLAT+PN+M  +   + SG++MDVDN+AF
Sbjct: 70  YHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVLLATDPNYMPVLPPDVASGNSMDVDNDAF 129

Query: 68  QRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQ 127
           +R+ +++DG+L+E   RIS+ D+Q+SR R+S FLS+HTAYELLPESGKVVALD+DLPVKQ
Sbjct: 130 RRMARLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQ 189

Query: 128 AFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWK 187
           AFHIL+EQG+ MAPLWDF K +FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWK
Sbjct: 190 AFHILHEQGVFMAPLWDFCKGQFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWK 249

Query: 188 EGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQL 247
           EGK+YLNRQ + HG AF R  ++AGP DNLKD+A KIL  EV+TVPIIHSSS+D SFPQL
Sbjct: 250 EGKSYLNRQNNGHGTAFSRCFIHAGPYDNLKDIAMKILQKEVSTVPIIHSSSEDASFPQL 309

Query: 248 LHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASL 307
           LH+ASLSGILKC+CRYFRHCSSSLP+L+LPICAIPVGTWVPKIGE NRRPLAMLRP+ASL
Sbjct: 310 LHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRRPLAMLRPTASL 369

Query: 308 SAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 367
           ++ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK++AY HINL EMT+HQALQLGQ
Sbjct: 370 ASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYTHINLDEMTVHQALQLGQ 429

Query: 368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427
           D+YSPYELRSQRCQMCL SD LHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 
Sbjct: 430 DAYSPYELRSQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFF 489

Query: 428 LG 429
           +G
Sbjct: 490 IG 491

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556126|ref|XP_003546378.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/422 (79%), Positives = 383/422 (90%)

Query: 8   YVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAF 67
           Y QYKF VDGEWRHDEHQP++  +YGIVNTV LAT+PN++  +   + SG++MDVDN+AF
Sbjct: 69  YHQYKFFVDGEWRHDEHQPYVPGDYGIVNTVFLATDPNYIPVLPPDVASGNSMDVDNDAF 128

Query: 68  QRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQ 127
           +R+V+++DG+L+E   RIS+ D+Q+SR R+S FLS+HTAYELLPESGKVVALD+DLPVKQ
Sbjct: 129 RRMVRLTDGTLSEVLPRISDTDVQISRQRISAFLSSHTAYELLPESGKVVALDVDLPVKQ 188

Query: 128 AFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWK 187
           AFHIL+EQGI MAPLWDF K +FVGVLSA DFILILRELGNHGSNLTEEELETHTISAWK
Sbjct: 189 AFHILHEQGIFMAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAWK 248

Query: 188 EGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQL 247
           EGK+YLNRQ + HG  F R  ++AGP DNLKD+A KIL  EV+TVPIIHSSS+D SFPQL
Sbjct: 249 EGKSYLNRQNNGHGTMFSRRFIHAGPYDNLKDIAMKILQKEVSTVPIIHSSSEDASFPQL 308

Query: 248 LHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASL 307
           LH+ASLSGILKC+CRYFRHCSSSLP+L+LPICAIPVGTWVPKIGE NR+PLAMLRP+ASL
Sbjct: 309 LHLASLSGILKCICRYFRHCSSSLPVLQLPICAIPVGTWVPKIGESNRQPLAMLRPTASL 368

Query: 308 SAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 367
           ++ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK++AYAHINL EMT+HQALQLGQ
Sbjct: 369 ASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKNRAYAHINLDEMTVHQALQLGQ 428

Query: 368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 427
           D+YSPYELRSQRCQMCL SD LHKVMERLANPGVRRLVIVEAGSKRVEGIVSL DIFKF 
Sbjct: 429 DAYSPYELRSQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLRDIFKFF 488

Query: 428 LG 429
           +G
Sbjct: 489 IG 490

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450664|ref|XP_004143082.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus] gi|449523153|ref|XP_004168589.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Cucumis sativus]

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/423 (80%), Positives = 376/423 (88%), Gaps = 1/423 (0%)

Query: 8   YVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI-NQGMPSGSNMDVDNEA 66
           Y QYKF VDGEWRHDE Q  +S EYG+VNTVLLATEP++   + N  M  GS+MDVDNEA
Sbjct: 69  YHQYKFFVDGEWRHDEQQTCVSGEYGVVNTVLLATEPSYAAPLANPEMTPGSSMDVDNEA 128

Query: 67  FQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVK 126
           F+RLV+I+DG L+EA   ISEADLQ SRHR+S FLSTHT YELLPESGKVVALDIDLPVK
Sbjct: 129 FRRLVRINDGRLSEAVHSISEADLQCSRHRISAFLSTHTVYELLPESGKVVALDIDLPVK 188

Query: 127 QAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAW 186
           QAFHIL+EQGI  APLWDFSK +FVGVLSASDFILIL+ELG  GSNLTEEELETHTISAW
Sbjct: 189 QAFHILHEQGIPTAPLWDFSKGQFVGVLSASDFILILKELGKRGSNLTEEELETHTISAW 248

Query: 187 KEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ 246
           KEGKAYLN ++D  G+   R  ++A P DNLKDVA KIL N+VATVPIIHSS++DGSFPQ
Sbjct: 249 KEGKAYLNGRVDGQGRFLSRQFIHAEPFDNLKDVALKILQNQVATVPIIHSSAEDGSFPQ 308

Query: 247 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 306
           LLH+ASLSGILKC+CRYFRHCSS LP+L+LPI AIPVGTWVPKIGE N RPLAMLRPSAS
Sbjct: 309 LLHLASLSGILKCICRYFRHCSSLLPVLQLPIFAIPVGTWVPKIGESNGRPLAMLRPSAS 368

Query: 307 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 366
           LS+ALNLL+QAQVSSIPIVDDNDSLLD+YCRSDITALAKD+AY HINL EMTIHQALQLG
Sbjct: 369 LSSALNLLIQAQVSSIPIVDDNDSLLDVYCRSDITALAKDRAYTHINLDEMTIHQALQLG 428

Query: 367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426
           QDS+S YE RSQRCQMCL SD+LHKVM+RLANPGVRRLVIVEAGSKRVEGI+SLSDIFKF
Sbjct: 429 QDSFSLYEPRSQRCQMCLRSDSLHKVMDRLANPGVRRLVIVEAGSKRVEGIISLSDIFKF 488

Query: 427 LLG 429
           LLG
Sbjct: 489 LLG 491

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123196|ref|XP_002330362.1| predicted protein [Populus trichocarpa] gi|222871566|gb|EEF08697.1| predicted protein [Populus trichocarpa]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/420 (79%), Positives = 372/420 (88%), Gaps = 4/420 (0%)

Query: 10  QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQR 69
           QYKFCVDGEWRHDE QP  ++EYGIVN V    E N+    N  M  GS+M++DNEAF R
Sbjct: 49  QYKFCVDGEWRHDELQPHSTTEYGIVNIVQFNMEANY----NPEMIPGSSMELDNEAFTR 104

Query: 70  LVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAF 129
           LV +SDG+LT     ISEADLQVSRHR+SVFL+THTAYELLP+SGKVVALD+DLPVKQAF
Sbjct: 105 LVSVSDGTLTGGVPSISEADLQVSRHRISVFLTTHTAYELLPQSGKVVALDVDLPVKQAF 164

Query: 130 HILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEG 189
           HIL+EQGISMAPLWDFS+ +FVGVLSA DFILILRELGN+GSNLTEEEL+TH+ISAWKEG
Sbjct: 165 HILFEQGISMAPLWDFSRGQFVGVLSALDFILILRELGNNGSNLTEEELDTHSISAWKEG 224

Query: 190 KAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLH 249
           KAYL RQID H    PR L++AGP DNLK+VA +IL  +VATVP+IHSSS+D SFPQLLH
Sbjct: 225 KAYLERQIDGHVWPLPRHLIHAGPYDNLKEVALRILQYKVATVPVIHSSSEDSSFPQLLH 284

Query: 250 IASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSA 309
           +ASLSGILKC+CRYFRHCSS+LPIL+LPI AIPVG+WVP IGEP+  PL MLRPSASLS+
Sbjct: 285 LASLSGILKCICRYFRHCSSTLPILQLPIGAIPVGSWVPSIGEPSGCPLVMLRPSASLSS 344

Query: 310 ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 369
           ALNLL+QAQVSSIPIVD+NDSL+DIYCRSDITALAKDK Y HINL+EMTI+QALQLGQD+
Sbjct: 345 ALNLLIQAQVSSIPIVDENDSLVDIYCRSDITALAKDKIYTHINLNEMTINQALQLGQDA 404

Query: 370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429
           YS +ELRSQRCQMCL SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIV+L DIFKFLLG
Sbjct: 405 YSSHELRSQRCQMCLRSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVTLRDIFKFLLG 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432326|ref|XP_002274373.1| PREDICTED: sucrose nonfermenting 4-like protein [Vitis vinifera] gi|297736884|emb|CBI26085.3| unnamed protein product [Vitis vinifera]

 Score =  680 bits (1754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/423 (80%), Positives = 378/423 (89%), Gaps = 1/423 (0%)

Query: 8   YVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMH-GINQGMPSGSNMDVDNEA 66
           Y QYKF VDGEWRHDE+QPFIS  YGIVNTVLLA E +++   I+  +PS +NMDVDNEA
Sbjct: 69  YHQYKFFVDGEWRHDENQPFISCTYGIVNTVLLARESDYIPPTISPAVPSLTNMDVDNEA 128

Query: 67  FQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVK 126
           FQ+LV+ISDGS  EA  RI E DL+VSRHRVS+FLSTHT YELLPESGKV+ LD+DLPVK
Sbjct: 129 FQQLVRISDGSRHEAVPRIQETDLEVSRHRVSLFLSTHTVYELLPESGKVITLDVDLPVK 188

Query: 127 QAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAW 186
           QAFHILYEQGIS+APLWD+ K RFVGVLSA DFILILRELGNHGSNLTEEELETHTISAW
Sbjct: 189 QAFHILYEQGISIAPLWDYFKGRFVGVLSALDFILILRELGNHGSNLTEEELETHTISAW 248

Query: 187 KEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ 246
           KEGK YLNRQID +G+AF R L++AGP DNLKDVA KIL NEVATVPIIHSSS+DGSFPQ
Sbjct: 249 KEGKGYLNRQIDGNGRAFSRGLIHAGPYDNLKDVALKILENEVATVPIIHSSSEDGSFPQ 308

Query: 247 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 306
           LLH+ASLSGILKC+CRYFRH S+SLP+L+LPI AIPVGTWV +IGE N+RPLA L PSAS
Sbjct: 309 LLHLASLSGILKCICRYFRHSSNSLPVLQLPIFAIPVGTWVSEIGEANQRPLAKLHPSAS 368

Query: 307 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 366
           LS+AL+LLVQAQVSSIPIVDDNDSLLDIY RSDITALAK++ YAHINL +MTIHQALQLG
Sbjct: 369 LSSALSLLVQAQVSSIPIVDDNDSLLDIYSRSDITALAKNRVYAHINLDDMTIHQALQLG 428

Query: 367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426
           QD YSPYE  SQRCQMCL +D LH+VM+RLANPGVRRLVIVEAGS+RVEGIVSL DIFKF
Sbjct: 429 QDPYSPYEFNSQRCQMCLRTDPLHEVMDRLANPGVRRLVIVEAGSRRVEGIVSLRDIFKF 488

Query: 427 LLG 429
           LLG
Sbjct: 489 LLG 491

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107351|ref|XP_002314455.1| predicted protein [Populus trichocarpa] gi|222863495|gb|EEF00626.1| predicted protein [Populus trichocarpa]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/420 (76%), Positives = 365/420 (86%), Gaps = 21/420 (5%)

Query: 10  QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQR 69
           QYKF VDGEWRHDE QP+ ++EYGI+NT+    E NF    N  M  GS+M++DNEAF R
Sbjct: 49  QYKFLVDGEWRHDELQPYTTTEYGILNTIQFNMEANF----NPEMIPGSSMELDNEAFTR 104

Query: 70  LVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAF 129
           L                 ADLQVSRHR+SVFL+THTAYELLP+SGKVVALD+DLPVKQAF
Sbjct: 105 L-----------------ADLQVSRHRISVFLTTHTAYELLPQSGKVVALDVDLPVKQAF 147

Query: 130 HILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEG 189
           HIL+EQGI MAPLWDFS+ +FVGVLSA DFILILRELGN+GS+ TEEEL+THTISAWKEG
Sbjct: 148 HILFEQGIPMAPLWDFSRGQFVGVLSALDFILILRELGNNGSDFTEEELDTHTISAWKEG 207

Query: 190 KAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLH 249
           K+YLNRQID H +A PR L++AGP DNLK+VA +IL NEVATVPIIHSSS+DGSFPQLLH
Sbjct: 208 KSYLNRQIDGHVRALPRHLIHAGPYDNLKEVALRILQNEVATVPIIHSSSEDGSFPQLLH 267

Query: 250 IASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSA 309
           +ASLSGILKC+CRYFRHCS ++P+L+LPI AIPVG+WVP IGEP+ RPLAMLRPSASLS+
Sbjct: 268 LASLSGILKCICRYFRHCSGTVPMLQLPIGAIPVGSWVPSIGEPSGRPLAMLRPSASLSS 327

Query: 310 ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 369
           ALNLL+QAQVSSIPIVD+NDSL+DIYCRSDITALAKDK Y HINL+EMTI+QALQLGQD 
Sbjct: 328 ALNLLIQAQVSSIPIVDENDSLIDIYCRSDITALAKDKIYTHINLNEMTINQALQLGQDV 387

Query: 370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429
           YS Y+LRSQRCQMCL SDTLHKVMERLANPGVRRLVIVEAGS RVEGIV+LSDIF+FLLG
Sbjct: 388 YSSYDLRSQRCQMCLRSDTLHKVMERLANPGVRRLVIVEAGSNRVEGIVTLSDIFRFLLG 447

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450904|ref|XP_002284480.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 1 [Vitis vinifera]

 Score =  650 bits (1677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/424 (76%), Positives = 363/424 (85%), Gaps = 6/424 (1%)

Query: 8   YVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI-NQGMPSGSNMDVDNEA 66
           Y QYKF VDGEWRHDEHQPF+S  YG+VNT+ L  EP+ +  + +   P GSNMD+DN+ 
Sbjct: 69  YHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPREPDVVPAVFSPDTPGGSNMDLDNDP 128

Query: 67  FQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVK 126
           F R    S G+L E   RISEADL+VSRHRVS FLSTH AYELLPESGKV+ALD++LPVK
Sbjct: 129 FPRG---SSGTLQEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVK 185

Query: 127 QAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAW 186
           QAFH LYEQGI +APLWDF K +FVGVLSA DFILILRELGNHGSNLTEEELETHTISAW
Sbjct: 186 QAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAW 245

Query: 187 KEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ 246
           KEGK +L RQID  G+  PR LV+AGP D+LKDV  KIL N+VATVPIIHS+SQDGSFPQ
Sbjct: 246 KEGKLHL-RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSFPQ 304

Query: 247 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 306
           LLH+ASLSGILKC+CR+FRH SSSLPIL+ PIC+IPVGTWVPKIGE N +P AMLRP+AS
Sbjct: 305 LLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPNAS 364

Query: 307 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 366
           L AAL+LLVQA+VSSIPIVDDNDSLLDIY RSDITALAKD+AYA I+L  M+IHQALQLG
Sbjct: 365 LGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMSIHQALQLG 424

Query: 367 QDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425
           QD+ SPY   S QRCQMCL SD LHKVMERLANPGVRRLVIVEAGSKRVEG++SLSD+F+
Sbjct: 425 QDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGVISLSDVFR 484

Query: 426 FLLG 429
           FLLG
Sbjct: 485 FLLG 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487759|ref|XP_003633645.1| PREDICTED: sucrose nonfermenting 4-like protein-like isoform 2 [Vitis vinifera] gi|296088362|emb|CBI36807.3| unnamed protein product [Vitis vinifera]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/424 (75%), Positives = 359/424 (84%), Gaps = 12/424 (2%)

Query: 8   YVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGI-NQGMPSGSNMDVDNEA 66
           Y QYKF VDGEWRHDEHQPF+S  YG+VNT+ L  EP+ +  + +   P GSNMD+DN+ 
Sbjct: 69  YHQYKFFVDGEWRHDEHQPFVSGNYGVVNTIFLPREPDVVPAVFSPDTPGGSNMDLDNDP 128

Query: 67  FQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVK 126
           F R          E   RISEADL+VSRHRVS FLSTH AYELLPESGKV+ALD++LPVK
Sbjct: 129 FPR---------GEVIPRISEADLEVSRHRVSEFLSTHIAYELLPESGKVIALDVNLPVK 179

Query: 127 QAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAW 186
           QAFH LYEQGI +APLWDF K +FVGVLSA DFILILRELGNHGSNLTEEELETHTISAW
Sbjct: 180 QAFHTLYEQGIPVAPLWDFCKGQFVGVLSALDFILILRELGNHGSNLTEEELETHTISAW 239

Query: 187 KEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ 246
           KEGK +L RQID  G+  PR LV+AGP D+LKDV  KIL N+VATVPIIHS+SQDGSFPQ
Sbjct: 240 KEGKLHL-RQIDGSGRLCPRHLVHAGPYDSLKDVTLKILQNKVATVPIIHSASQDGSFPQ 298

Query: 247 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 306
           LLH+ASLSGILKC+CR+FRH SSSLPIL+ PIC+IPVGTWVPKIGE N +P AMLRP+AS
Sbjct: 299 LLHLASLSGILKCICRHFRHSSSSLPILQQPICSIPVGTWVPKIGESNGQPFAMLRPNAS 358

Query: 307 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 366
           L AAL+LLVQA+VSSIPIVDDNDSLLDIY RSDITALAKD+AYA I+L  M+IHQALQLG
Sbjct: 359 LGAALSLLVQAEVSSIPIVDDNDSLLDIYSRSDITALAKDRAYAQIHLDNMSIHQALQLG 418

Query: 367 QDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425
           QD+ SPY   S QRCQMCL SD LHKVMERLANPGVRRLVIVEAGSKRVEG++SLSD+F+
Sbjct: 419 QDANSPYGFISGQRCQMCLRSDPLHKVMERLANPGVRRLVIVEAGSKRVEGVISLSDVFR 478

Query: 426 FLLG 429
           FLLG
Sbjct: 479 FLLG 482

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563906|ref|XP_003550198.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/433 (72%), Positives = 362/433 (83%), Gaps = 18/433 (4%)

Query: 3   FYIVHYV-----QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSG 57
           F ++H +     QYKF VDGEWRHD+ QP  S EYGIVNTV LAT+PN +  +   + SG
Sbjct: 59  FQVIHSLVPGHHQYKFFVDGEWRHDDLQPCESGEYGIVNTVSLATDPNILPVLTPDIVSG 118

Query: 58  SNMDVDNEAFQRLVQISDGSLTEAA-ERISEADLQVSRHRVSVFLSTHTAYELLPESGKV 116
           SNMDVDNEAF+R+V+++DG+L+     RIS+ D+Q SR R+S FLS  TAYELLPESGKV
Sbjct: 119 SNMDVDNEAFRRMVRLTDGTLSNVLLPRISDVDIQTSRQRISAFLSMSTAYELLPESGKV 178

Query: 117 VALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEE 176
           V LD+DLPVKQAFHIL+EQGI +APLWD  K +FVGVLSA DFILILRELGNHGSNLTEE
Sbjct: 179 VTLDVDLPVKQAFHILHEQGIPIAPLWDICKGQFVGVLSALDFILILRELGNHGSNLTEE 238

Query: 177 ELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIH 236
           ELETHTISAWK GK             F +  + AGP DNLK++A KIL + ++TVPIIH
Sbjct: 239 ELETHTISAWKGGKW----------TGFTQCFIRAGPYDNLKEIAVKILQHGISTVPIIH 288

Query: 237 SSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRR 296
           S  +DGSFPQLLH+ASLSGILKC+CRYFR+CSSSLPIL+LPICAIPVGTWVPKIGE NRR
Sbjct: 289 S--EDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRR 346

Query: 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSE 356
           PLAMLRP+ASL++ALNLLVQAQVSSIPIVDD+DSLLDIYCRSDITALAKD+ Y HINL E
Sbjct: 347 PLAMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLDE 406

Query: 357 MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEG 416
           MT+HQALQLGQDSY+ YEL  QRCQMCL +D+LHKVMERLA+PGVRRLVIVEAGSKRVEG
Sbjct: 407 MTVHQALQLGQDSYNTYELSCQRCQMCLRTDSLHKVMERLASPGVRRLVIVEAGSKRVEG 466

Query: 417 IVSLSDIFKFLLG 429
           I++LSDIF F LG
Sbjct: 467 IIALSDIFNFFLG 479

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519984|ref|XP_003528648.1| PREDICTED: sucrose nonfermenting 4-like protein-like [Glycine max]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 319/432 (73%), Positives = 360/432 (83%), Gaps = 18/432 (4%)

Query: 3   FYIVHYV-----QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSG 57
           F ++H +     QYKF VDGEWRHD+HQP +S EYGIVNTVLLAT+PN +  +   + SG
Sbjct: 59  FQVIHSLIPGHHQYKFFVDGEWRHDDHQPCVSGEYGIVNTVLLATDPNIVPVLTPEIVSG 118

Query: 58  SNMDVDNEAFQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVV 117
           SNMDVDNEAF R   +++  L     RIS+ D+Q SR R+S FLS  TAYELLPESGKVV
Sbjct: 119 SNMDVDNEAF-RYSTLNNVLL----PRISDVDIQTSRQRISAFLSMSTAYELLPESGKVV 173

Query: 118 ALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEE 177
            LD+DLPVKQAFHIL+EQGI +APLWD  K +FVGVLSA DFILI+RELGNHGSNLTEEE
Sbjct: 174 TLDVDLPVKQAFHILHEQGIPVAPLWDICKGQFVGVLSALDFILIIRELGNHGSNLTEEE 233

Query: 178 LETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHS 237
           LETHTISAWK GK           + F R  V  GP DNLK++A KIL N ++TVPIIHS
Sbjct: 234 LETHTISAWKGGKW------TGFTQCFIRVSVLCGPYDNLKEIAVKILQNGISTVPIIHS 287

Query: 238 SSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRP 297
             +DGSFPQLLH+ASLSGILKC+CRYFR+CSSSLPIL+LPICAIPVGTWVPKIGE NRRP
Sbjct: 288 --EDGSFPQLLHLASLSGILKCICRYFRNCSSSLPILQLPICAIPVGTWVPKIGESNRRP 345

Query: 298 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEM 357
           LAMLRP+ASL++ALNLLVQAQVSSIPIVDD+DSLLDIYCRSDITALAKD+ Y HINL EM
Sbjct: 346 LAMLRPNASLTSALNLLVQAQVSSIPIVDDSDSLLDIYCRSDITALAKDRTYTHINLDEM 405

Query: 358 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGI 417
           T+HQALQLGQDSY+ YELRSQRCQMCL +D+LHKVMERLANPGVRRLVIVEAGSKRVEGI
Sbjct: 406 TVHQALQLGQDSYNTYELRSQRCQMCLRTDSLHKVMERLANPGVRRLVIVEAGSKRVEGI 465

Query: 418 VSLSDIFKFLLG 429
           ++LSDIF F LG
Sbjct: 466 IALSDIFNFFLG 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
TAIR|locus:2036079	487	SNF4 "homolog of yeast sucrose	0.969	0.854	0.683	5.2e-152
ZFIN|ZDB-GENE-040426-2188	330	prkag1 "protein kinase, AMP-ac	0.289	0.375	0.394	6.5e-30
FB|FBgn0264357	1400	SNF4Agamma "SNF4/AMP-activated	0.328	0.100	0.344	1.4e-28
RGD|727782	326	Prkag2 "protein kinase, AMP-ac	0.289	0.380	0.357	6.8e-28
UNIPROTKB|Q8N7V9	340	PRKAG1 "cDNA FLJ40287 fis, clo	0.354	0.447	0.350	1.2e-27
UNIPROTKB|F1NXL4	565	PRKAG2 "Uncharacterized protei	0.312	0.237	0.351	8.5e-27
MGI|MGI:1891343	489	Prkag3 "protein kinase, AMP-ac	0.319	0.280	0.337	1.1e-26
RGD|1308698	493	Prkag3 "protein kinase, AMP-ac	0.298	0.259	0.350	1.5e-26
UNIPROTKB|F1LLY5	528	Prkag2 "Protein Prkag2" [Rattu	0.289	0.234	0.357	1.8e-26
MGI|MGI:1336153	566	Prkag2 "protein kinase, AMP-ac	0.289	0.219	0.357	2.4e-26

TAIR|locus:2036079 SNF4 "homolog of yeast sucrose nonfermenting 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
 Identities = 290/424 (68%), Positives = 336/424 (79%)

Query:     8 YVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMH-GINQGMPSGSNMDVDNEA 66
             Y QYKF VDGEWRHDEHQPF+S   G+VNT+ + T P+ +  G +      SNMDVD + 
Sbjct:    69 YHQYKFFVDGEWRHDEHQPFVSGNGGVVNTIFI-TGPDMVPAGFSPETLGRSNMDVD-DV 126

Query:    67 FQRLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVK 126
             F R    S     EA  R+S  DL++SRHR+SV LST TAYELLPESGKV+ALD++LPVK
Sbjct:   127 FLRTADPSQ----EAVPRMSGVDLELSRHRISVLLSTRTAYELLPESGKVIALDVNLPVK 182

Query:   127 QAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAW 186
             QAFHILYEQGI +APLWDF K +FVGVL   DFILILRELG HGSNLTEEELETHTI+AW
Sbjct:   183 QAFHILYEQGIPLAPLWDFGKGQFVGVLGPLDFILILRELGTHGSNLTEEELETHTIAAW 242

Query:   187 KEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ 246
             KEGKA+++RQ D  G+ +PRPLV  GP DNLKDVA KIL N+VA VP+I+SS QDGS+PQ
Sbjct:   243 KEGKAHISRQYDGSGRPYPRPLVQVGPYDNLKDVALKILQNKVAAVPVIYSSLQDGSYPQ 302

Query:   247 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXX 306
             LLH+ASLSGILKC+CRYFRH SSSLPIL+ PIC+IP+GTWVP+IGE + +PLA LRP   
Sbjct:   303 LLHLASLSGILKCICRYFRHSSSSLPILQQPICSIPLGTWVPRIGESSSKPLATLRPHAS 362

Query:   307 XXXXXXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 366
                           SIP+VDDNDSL+DIY RSDITALAKDKAYA I+L +MT+HQALQLG
Sbjct:   363 LGSALALLVQAEVSSIPVVDDNDSLIDIYSRSDITALAKDKAYAQIHLDDMTVHQALQLG 422

Query:   367 QDSYSPYEL-RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 425
             QD+  PY +   QRC MCL SD+L KVMERLANPGVRRLVIVEAGSKRVEGI+SLSD+F+
Sbjct:   423 QDASPPYGIFNGQRCHMCLRSDSLVKVMERLANPGVRRLVIVEAGSKRVEGIISLSDVFQ 482

Query:   426 FLLG 429
             FLLG
Sbjct:   483 FLLG 486

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0030295 "protein kinase activator activity" evidence=ISS

GO:0042149 "cellular response to glucose starvation" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=IDA

ZFIN|ZDB-GENE-040426-2188 prkag1 "protein kinase, AMP-activated, gamma 1 non-catalytic subunit" [Danio rerio (taxid:7955)]

 Score = 221 (82.9 bits), Expect = 6.5e-30, Sum P(2) = 6.5e-30
 Identities = 54/137 (39%), Positives = 75/137 (54%)

Query:   100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
             F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +DF
Sbjct:    30 FMKSHRCYDLVPTSSKLVVFDTSLQVKKAFFALVSNGVRAAPLWDSKKQCFVGMLTITDF 89

Query:   160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
             I IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +L 
Sbjct:    90 INILHRY--YKSPLVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVSISPNASLY 137

Query:   219 DVARKILHNEVATVPII 235
             D    +L +++  +P+I
Sbjct:   138 DAVSSLLKHKIHRLPVI 154

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

FB|FBgn0264357 SNF4Agamma "SNF4/AMP-activated protein kinase gamma subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
 Identities = 53/154 (34%), Positives = 88/154 (57%)

Query:    83 ERISEADLQVSRHRVSV-FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAP 141
             E+++ +DL+    ++ V F   H  Y+L+P S K+V  D  L VK+AF+ L   G+  AP
Sbjct:   909 EKVNLSDLEEDDSQIFVKFFRFHKCYDLIPTSAKLVVFDTQLLVKKAFYALVYNGVRAAP 968

Query:   142 LWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHG 201
             LWD  K +FVG+L+ +DFI IL ++     N + E+LE H +  W+   + L+ Q+    
Sbjct:   969 LWDSEKQQFVGMLTITDFIKIL-QMYYKSPNASMEQLEEHKLDTWR---SVLHNQV---- 1020

Query:   202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 235
                  PLV  GP+ +L D  + ++H+ +  +P+I
Sbjct:  1021 ----MPLVSIGPDASLYDAIKILIHSRIHRLPVI 1050

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0004679 "AMP-activated protein kinase activity" evidence=ISS;NAS

GO:0042632 "cholesterol homeostasis" evidence=IMP

GO:0045787 "positive regulation of cell cycle" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0006914 "autophagy" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI

GO:0009267 "cellular response to starvation" evidence=IMP

GO:0030730 "sequestering of triglyceride" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0042595 "behavioral response to starvation" evidence=IMP

RGD|727782 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 6.8e-28, Sum P(2) = 6.8e-28
 Identities = 49/137 (35%), Positives = 75/137 (54%)

Query:   100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
             F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K  FVG+L+ +DF
Sbjct:    21 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 80

Query:   160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
             I IL     + S + +  ELE H I  W+E   YL        + F +PLV   P+ +L 
Sbjct:    81 INILHRY--YKSPMVQIYELEEHKIETWRE--LYLQ-------ETF-KPLVNISPDASLF 128

Query:   219 DVARKILHNEVATVPII 235
             D    ++ N++  +P+I
Sbjct:   129 DAVYSLIKNKIHRLPVI 145

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=IDA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO;IPI

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO;IDA

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP;IDA

UNIPROTKB|Q8N7V9 PRKAG1 "cDNA FLJ40287 fis, clone TESTI2027909, highly similar to 5'-AMP-ACTIVATED PROTEIN KINASE, GAMMA-1 SUBUNIT" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 1.2e-27, Sum P(2) = 1.2e-27
 Identities = 62/177 (35%), Positives = 86/177 (48%)

Query:    74 SDGSLTEAAERISEADLQVSRHRV-SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHIL 132
             SD S   A E     +   S + V + F+ +H  Y+L+P S K+V  D  L VK+AF  L
Sbjct:     7 SDSS--PAVENEHPQETPESNNSVYTSFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFAL 64

Query:   133 YEQGISMAPLWDFSKARFV---------GVLSASDFILILRELGNHGSNLTE-EELETHT 182
                G+  APLWD  K  FV         G+L+ +DFI IL     + S L +  ELE H 
Sbjct:    65 VTNGVRAAPLWDSKKQSFVVLRALSCPLGMLTITDFINILHRY--YKSALVQIYELEEHK 122

Query:   183 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSS 239
             I  W+E   YL    DS      +PLV   PN +L D    ++ N++  +P+I   S
Sbjct:   123 IETWRE--VYLQ---DSF-----KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 169

GO:0004679 "AMP-activated protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

UNIPROTKB|F1NXL4 PRKAG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 206 (77.6 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
 Identities = 52/148 (35%), Positives = 80/148 (54%)

Query:    90 LQVSRHRVSV-FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKA 148
             L+ S   + V F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K 
Sbjct:   249 LEESESDIYVRFMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQ 308

Query:   149 RFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRP 207
              FVG+L+ +DFI IL     + S + +  ELE H I  W+E   YL        + F +P
Sbjct:   309 SFVGMLTITDFINILHRY--YKSPMVQIYELEEHKIETWRE--LYLQ-------ETF-KP 356

Query:   208 LVYAGPNDNLKDVARKILHNEVATVPII 235
             LV   P+ +L D    ++ N++  +P+I
Sbjct:   357 LVNISPDASLFDAVYSLIKNKIHRLPVI 384

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

MGI|MGI:1891343 Prkag3 "protein kinase, AMP-activated, gamma 3 non-catatlytic subunit" [Mus musculus (taxid:10090)]

 Score = 210 (79.0 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
 Identities = 52/154 (33%), Positives = 80/154 (51%)

Query:    83 ERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPL 142
             + + +   QV  H    F+  HT Y+ +  S K+V  D  L +K+AF  +   G+  APL
Sbjct:   174 DELQKPGAQVYMH----FMQEHTCYDAMATSSKLVIFDTTLEIKKAFFAMVANGVRAAPL 229

Query:   143 WDFSKARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHG 201
             WD  K  FVG+L+ +DFIL+L     + S L +  E+E H I  W+E   YL       G
Sbjct:   230 WDSKKQSFVGMLTITDFILVLHRY--YRSPLVQIYEIEEHKIETWRE--IYLQ------G 279

Query:   202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 235
               F +PLV   PND+L +    ++ N +  +P++
Sbjct:   280 -CF-KPLVSISPNDSLFEAVYALIKNRIHRLPVL 311

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005978 "glycogen biosynthetic process" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0015758 "glucose transport" evidence=IMP

GO:0019901 "protein kinase binding" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

RGD|1308698 Prkag3 "protein kinase, AMP-activated, gamma 3 non-catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 209 (78.6 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 48/137 (35%), Positives = 74/137 (54%)

Query:   100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
             F+  HT Y+ +  S K+V  D  L +K+AF  +   G+  APLWD  K  FVG+L+ +DF
Sbjct:   187 FMQEHTCYDAMATSSKLVIFDTTLEIKKAFFAMVANGVRAAPLWDSKKQSFVGMLTITDF 246

Query:   160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
             IL+L     + S L +  E+E H I  W+   A +  Q    G  F +PLV   PND+L 
Sbjct:   247 ILVLHRY--YRSPLVQIYEIEEHKIETWRGFSAEIYLQ----G-CF-KPLVSISPNDSLF 298

Query:   219 DVARKILHNEVATVPII 235
             +    ++ N +  +P++
Sbjct:   299 EAVYALIKNRIHRLPVL 315

GO:0005978 "glycogen biosynthetic process" evidence=IEA;ISO

GO:0015758 "glucose transport" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=IDA

GO:0004679 "AMP-activated protein kinase activity" evidence=IMP

UNIPROTKB|F1LLY5 Prkag2 "Protein Prkag2" [Rattus norvegicus (taxid:10116)]

 Score = 205 (77.2 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
 Identities = 49/137 (35%), Positives = 75/137 (54%)

Query:   100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
             F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K  FVG+L+ +DF
Sbjct:   223 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 282

Query:   160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
             I IL     + S + +  ELE H I  W+E   YL        + F +PLV   P+ +L 
Sbjct:   283 INILHRY--YKSPMVQIYELEEHKIETWRE--LYLQ-------ETF-KPLVNISPDASLF 330

Query:   219 DVARKILHNEVATVPII 235
             D    ++ N++  +P+I
Sbjct:   331 DAVYSLIKNKIHRLPVI 347

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0006110 "regulation of glycolysis" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0030295 "protein kinase activator activity" evidence=IEA

GO:0031588 "AMP-activated protein kinase complex" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

MGI|MGI:1336153 Prkag2 "protein kinase, AMP-activated, gamma 2 non-catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
 Identities = 49/137 (35%), Positives = 75/137 (54%)

Query:   100 FLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDF 159
             F+ +H  Y+++P S K+V  D  L VK+AF  L   G+  APLW+  K  FVG+L+ +DF
Sbjct:   261 FMRSHKCYDIVPTSSKLVVFDTTLQVKKAFFALVANGVRAAPLWESKKQSFVGMLTITDF 320

Query:   160 ILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 218
             I IL     + S + +  ELE H I  W+E   YL        + F +PLV   P+ +L 
Sbjct:   321 INILHRY--YKSPMVQIYELEEHKIETWRE--LYLQ-------ETF-KPLVNISPDASLF 368

Query:   219 DVARKILHNEVATVPII 235
             D    ++ N++  +P+I
Sbjct:   369 DAVYSLIKNKIHRLPVI 385

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004679 "AMP-activated protein kinase activity" evidence=ISO;TAS

GO:0004862 "cAMP-dependent protein kinase inhibitor activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005977 "glycogen metabolic process" evidence=ISO

GO:0006110 "regulation of glycolysis" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=TAS

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006950 "response to stress" evidence=TAS

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=ISO

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0010800 "positive regulation of peptidyl-threonine phosphorylation" evidence=ISO

GO:0016208 "AMP binding" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019217 "regulation of fatty acid metabolic process" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030295 "protein kinase activator activity" evidence=ISO

GO:0031588 "AMP-activated protein kinase complex" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

GO:0045860 "positive regulation of protein kinase activity" evidence=ISO

GO:0050790 "regulation of catalytic activity" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944A6	SNF4_ARATH	No assigned EC number	0.7092	0.9720	0.8562	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	429
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	6e-36
cd04618	98	cd04618, CBS_pair_5, The CBS domain, named after h	8e-25
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-10
cd02859	80	cd02859, E_set_AMPKbeta_like_N, N-terminal Early s	3e-09
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	2e-07
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	6e-07
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-06
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	4e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	5e-06
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	7e-06
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-05
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	4e-05
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	5e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	5e-05
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	8e-05
pfam00571	57	pfam00571, CBS, CBS domain	9e-05
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-04
pfam00571	57	pfam00571, CBS, CBS domain	3e-04
pfam00571	57	pfam00571, CBS, CBS domain	3e-04
cd04627	123	cd04627, CBS_pair_14, The CBS domain, named after	3e-04
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	6e-04
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	6e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	7e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	0.001
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	0.001
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	0.001
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.002
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.003
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	0.003
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	0.004

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score =  128 bits (323), Expect = 6e-36
 Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 11/131 (8%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 355
           + +A  RP   L   L++LV+ +VS++PIVD+N  ++D+Y R D+  LAK+ AY   N  
Sbjct: 1   KNIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAY---NNL 57

Query: 356 EMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 415
           ++T+ +AL+     +          + C P D L  + + +    V RLV+V+   KRVE
Sbjct: 58  DLTVGEALERRSQDFE-------GVRTCSPDDCLRTIFDLIVKARVHRLVVVDEN-KRVE 109

Query: 416 GIVSLSDIFKF 426
           GI+SLSDI +F
Sbjct: 110 GIISLSDILQF 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|239990 cd04618, CBS_pair_5, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 97.3 bits (243), Expect = 8e-25
 Identities = 42/141 (29%), Positives = 57/141 (40%), Gaps = 43/141 (30%)

Query: 114 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 173
            K+V  D  LPVK+AF+ L E GI  APLWD  K +FVG+L+ +DFILILR         
Sbjct: 1   SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR--------- 51

Query: 174 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 233
                                             LV   P  +L D A  +L N++  +P
Sbjct: 52  ----------------------------------LVSIHPERSLFDAALLLLKNKIHRLP 77

Query: 234 IIHSSSQDGSFPQLLHIASLS 254
           +I  S+  G +          
Sbjct: 78  VIDPSTGTGLYILTSRRILKF 98

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 98

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 20/132 (15%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINL 354
           R +  + P  +++ AL L+++  +S +P+VDD+  L+ I    D+  ALA+      + +
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTV 60

Query: 355 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 414
            ++     +                     P  +L +  E +   G+RRL +V+    R+
Sbjct: 61  GDVMTRDVV------------------TVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRL 101

Query: 415 EGIVSLSDIFKF 426
            GIV+ SDI + 
Sbjct: 102 VGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|199889 cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit

 Score = 53.4 bits (129), Expect = 3e-09
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 2  FFYIVH----YVQYKFCVDGEWRHDEHQPFISSEYGIVNTVL 39
          F   V       +YKF VDGEW HD   P ++ E+G +N VL
Sbjct: 37 FSATVELPPGRYEYKFIVDGEWVHDPDLPTVTDEFGNLNNVL 78

E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase. Length = 80

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 30/134 (22%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLL------DIYCRSDITALAKDKAY 349
           R +  + P  ++  A  L+ +  V ++P+ + ND L+      DI  R    A+A+ +  
Sbjct: 1   RDVVTVSPDDTIREAARLMREHDVGALPVCE-NDRLVGIVTDRDIVVR----AVAEGRDP 55

Query: 350 AHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA 409
               + ++     +                       D + +    +    VRRL +V+ 
Sbjct: 56  DTTTVGDVMTRGVV------------------TVTEDDDVDEAARLMREHQVRRLPVVD- 96

Query: 410 GSKRVEGIVSLSDI 423
              R+ GIVSL D+
Sbjct: 97  DDGRLVGIVSLGDL 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 310 ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 369
           A  L+ +  +S +P+VD+   L+     SD+  L        +  +      + +     
Sbjct: 15  AFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSD 74

Query: 370 YSPYELRSQRCQM-CLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 426
                    R  + C PS TL +V+ +L    V R+ +V+   K   G+++L+DI   
Sbjct: 75  GVK-----SRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGK-PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 20/124 (16%)

Query: 303 PSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQA 362
              ++   L L+   +    P+VDD   L+ I   +DI  +  +   A + L    + + 
Sbjct: 8   VDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGREATV-LVGDVMTRD 65

Query: 363 LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSD 422
                                 P +TL   ++R+A   + RL +V+  S R+ GIVS SD
Sbjct: 66  PVTA-----------------SPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSD 107

Query: 423 IFKF 426
           + + 
Sbjct: 108 LLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 45.2 bits (108), Expect = 4e-06
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 20/126 (15%)

Query: 302 RPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSEMTIH 360
           RP A+++ A  L+ +  + ++ +VDD   L+ I+   DI   +A   A    +  +  + 
Sbjct: 7   RPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA----SALDTPVS 62

Query: 361 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 420
           + +             ++      P DT+ + M  +     R L +V+ G  ++ GIVS+
Sbjct: 63  EIM-------------TRNVITVTPDDTVDEAMALMTERRFRHLPVVDGG--KLVGIVSI 107

Query: 421 SDIFKF 426
            D+ K 
Sbjct: 108 GDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 20/131 (15%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 354
            + +  ++P  S+  AL L+ +  VS++P+VDD   L+ I    DI      +A A    
Sbjct: 6   TKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDI-----LRALAAGGK 59

Query: 355 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLA-NPGVRRLVIVEAGSKR 413
             + +              E+ ++      P   L + +E +     +RRL +V+    +
Sbjct: 60  RLLPV-------------KEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGK 106

Query: 414 VEGIVSLSDIF 424
           + GI++LSDI 
Sbjct: 107 LVGIITLSDIL 117

Length = 117

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 42.5 bits (101), Expect = 7e-06
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 340
            +  + P  +L  AL LL +  +  +P+VD+   L+ I  R DI
Sbjct: 1   DVVTVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDI 44

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 30/135 (22%), Positives = 58/135 (42%), Gaps = 25/135 (18%)

Query: 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 265
           R +V   P+D + +  R +L + ++ +P++     DG   +L+ I +   +L+       
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDD---DG---RLVGIVTERDLLR------- 47

Query: 266 HCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV 325
                         A      +  +G+   R +  + P  SL  A  L+++  +  +P+V
Sbjct: 48  ------------ALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVV 95

Query: 326 DDNDSLLDIYCRSDI 340
           DD   L+ I  RSDI
Sbjct: 96  DDEGRLVGIVTRSDI 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 15/121 (12%)

Query: 115 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 174
            VV +    P+ +A  I+   G    P+ D    + VG+++A+D   IL+ LG       
Sbjct: 2   DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATD---ILKYLGGGEKFNK 58

Query: 175 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 234
            +            G   +N  + S      R ++   P+D++KD A  +L   V  +P+
Sbjct: 59  IKT---------GNGLEAINEPVRSIMT---RNVITITPDDSIKDAAELMLEKRVGGLPV 106

Query: 235 I 235
           +
Sbjct: 107 V 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 27/121 (22%)

Query: 115 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 174
            VV +  D  V +A  ++ E GIS  P+ D    R VG+++  D   +LR L   G +  
Sbjct: 2   DVVTVSPDDTVAEALRLMLEHGISGLPVVD-DDGRLVGIVTERD---LLRALAEGGLDPL 57

Query: 175 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 234
               +  T                       R +V   P+ +L++ A  +L + +  +P+
Sbjct: 58  VTVGDVMT-----------------------RDVVTVSPDTSLEEAAELMLEHGIRRLPV 94

Query: 235 I 235
           +
Sbjct: 95  V 95

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 31/135 (22%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHIN- 353
           +PL  L P+A+L  A  L     +   P+VDD   L+ I   SDI  A+A+    A +  
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDGK-LVGIVTLSDIAHAIARGLELAKVKD 59

Query: 354 -LSE--MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 410
            +++  +TI +  QL                     D +  + +      V RL++ +  
Sbjct: 60  VMTKDVITIDEDEQL--------------------YDAIRLMNKH----NVGRLIVTDDE 95

Query: 411 SKRVEGIVSLSDIFK 425
            + V GI++ +DI +
Sbjct: 96  GRPV-GIITRTDILR 109

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 26/134 (19%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKDKAYAHIN 353
           RP     P  ++  A  L+ + +VSS+ +V D+  L+ I    D+    +A+        
Sbjct: 1   RPPVTCSPDTTIREAARLMTEHRVSSL-LVVDDGRLVGIVTDRDLRNRVVAEGLDP-DTP 58

Query: 354 LSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 412
           +SE MT    + +  D+                 + L  ++ER    G+  L +V+ G  
Sbjct: 59  VSEVMT-APPITIPPDATV--------------FEALLLMLER----GIHHLPVVDDG-- 97

Query: 413 RVEGIVSLSDIFKF 426
           R+ G++S +D+ + 
Sbjct: 98  RLVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 25/121 (20%)

Query: 305 ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ 364
            +    L LL + +VS +P+V  +  L+ I  R D+            N  E  +  AL 
Sbjct: 10  GTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL----------RNPEEEQL--ALL 57

Query: 365 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 424
           + +D   P  +         P D + +  + +    +RR+ +V+    ++ GIV+++DI 
Sbjct: 58  MTRD---PPTVS--------PDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIV 104

Query: 425 K 425
           +
Sbjct: 105 R 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 20/146 (13%)

Query: 114 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNL 173
            KVV++D D  V  AF ++ +  IS  P+ D  K + +G +SASD   +L    +     
Sbjct: 1   SKVVSIDSDERVLDAFKLMRKNNISGLPVVD-EKGKLIGNISASDLKGLLLSPDDLLLYR 59

Query: 174 TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVP 233
           T    E        +G                RPL+   P+  LK+V  K++ N+V  V 
Sbjct: 60  TITFKELSEKFTDSDGVK-------------SRPLITCTPSSTLKEVITKLVANKVHRVW 106

Query: 234 IIHSSSQDGSFPQLLHIASLSGILKC 259
           ++    ++G     + + +L+ I+  
Sbjct: 107 VV---DEEGK---PIGVITLTDIISI 126

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 39.8 bits (94), Expect = 9e-05
 Identities = 13/46 (28%), Positives = 24/46 (52%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 340
              +  + P  SL  AL L+ +  +S +P+VD++  L+ I    D+
Sbjct: 6   TPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDL 51

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 26/136 (19%), Positives = 60/136 (44%), Gaps = 18/136 (13%)

Query: 206 RPLVYAGPNDNLKDVARKIL-HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 264
            P+V    +D+L D A +++  + +  +P++   ++DG   +L+ + +   +L+      
Sbjct: 1   SPVVTLSEDDSLAD-AEELMREHRIRHLPVV---NEDG---KLVGLLTQRDLLRAALSSL 53

Query: 265 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPI 324
                     +  +   PV   +       +  +  + P   L  A  ++V+ ++  +P+
Sbjct: 54  SDNGEESLTKERDV---PVAEVM-------KTDVLTVTPDTPLREAAEIMVENKIGCLPV 103

Query: 325 VDDNDSLLDIYCRSDI 340
           VDD  +L+ I  RSD 
Sbjct: 104 VDDKGTLVGIITRSDF 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 115 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRE 165
            VV +  D  +++A  ++ E GIS  P+ D    + VG+++  D +  L E
Sbjct: 8   DVVTVPPDTSLEEALELMRENGISRLPVVD-EDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 385 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429
           P  +L + +E +   G+ RL +V     ++ GIV+L D+ + LL 
Sbjct: 14  PDTSLEEALELMRENGISRLPVV-DEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239999 cd04627, CBS_pair_14, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 385 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
            + +L + +E L + G+ R+ + E  S  V GI+S   + +FL 
Sbjct: 8   STASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLW 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 123

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.4 bits (92), Expect = 6e-04
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 301 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA-KDKAYAHINLSEMTI 359
           +R   S+  A+N+L +  +S +P+VDDN  L  I  R DI     +D+  A         
Sbjct: 6   VREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEK 65

Query: 360 HQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMER-LANPGVRRLVIVEAGSKRVEGIV 418
            + L L       Y+  S       P+D++   ++R L N     +V+      +V GI+
Sbjct: 66  ERMLDL-----PVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGIL 120

Query: 419 SLSDI 423
           +  D+
Sbjct: 121 TKKDV 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 27/132 (20%)

Query: 298 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY---CRSDI--TALAKDKAYAHI 352
           +  +   A+++ AL L+ +  VSS+ +    +S  D Y      DI    +A+ +    +
Sbjct: 3   VVTIDGLATVAEALQLMKEHGVSSLVVEKRRES--DAYGIVTMRDILKKVVAEGRDPDRV 60

Query: 353 NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 412
           N+ E+     +     S SP        + C       ++MER     +RR  +VE    
Sbjct: 61  NVYEIMTKPLI-----SVSP----DMDIKYCA------RLMERT---NIRRAPVVENN-- 100

Query: 413 RVEGIVSLSDIF 424
            + GI+SL+DIF
Sbjct: 101 ELIGIISLTDIF 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 340
            R      P  +L  AL  + +  +  +P+VDD+  L+ I  RSD+
Sbjct: 63  TRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDL 108

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 116 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILIL 163
           VV +  D  +++A  +L E GI   P+ D  + R VG+++  D I  L
Sbjct: 2   VVTVSPDTTLEEALELLRENGIRRLPVVD-EEGRLVGIVTRRDIIKAL 48

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 35/148 (23%)

Query: 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL----- 343
           K+     + L  +RP  +L  A  L  +  +   P+VDD D ++ I   SDI        
Sbjct: 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGN 231

Query: 344 --AKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGV 401
             AK   Y   N+  +TI++                           ++  +  +    V
Sbjct: 232 LDAKVSDYMRKNV--ITINEDED------------------------IYDAIRLMNKNNV 265

Query: 402 RRLVIVEAGSKRVEGIVSLSDIFKFLLG 429
            RL++ ++  K V GI++ +DI   + G
Sbjct: 266 GRLLVTDSNGKPV-GIITRTDILTRIAG 292

Length = 294

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 24/132 (18%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 355
             +    P  SL+ A + + + ++SSI +V D+   L I    DI  L            
Sbjct: 1   TQILTCPPDTSLAEAASRMRERRISSI-VVVDDGRPLGIVTERDILRL------------ 47

Query: 356 EMTIHQALQLGQDSYSPY-ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIV-EAGSKR 413
                  L  G D  +P  E+ S          +L+   + +   G+R LV+V + G   
Sbjct: 48  -------LASGPDLQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDG--E 98

Query: 414 VEGIVSLSDIFK 425
           + G++S +D+ +
Sbjct: 99  LLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 400 GVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429
           G RRL +V+ G+ ++ GI++ +DI K+L G
Sbjct: 23  GFRRLPVVDEGTGKLVGIITATDILKYLGG 52

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 12/127 (9%)

Query: 303 PSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA-LAKDKAYAHINLSEMTIH 360
           P+  +  A  ++V+     +P+VD+    L+ I   +DI   L   + +  I        
Sbjct: 8   PTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGN--GL 65

Query: 361 QALQLGQDSYSP-YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS 419
           +A+        P   + ++      P D++    E +    V  L +V+    ++ GIV+
Sbjct: 66  EAI------NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVT 118

Query: 420 LSDIFKF 426
             D+ K 
Sbjct: 119 ERDLLKA 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 22/130 (16%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 355
           RP+  +   AS+  A  L+++  ++ +P+VD++  L+ I    DI+     KA A     
Sbjct: 2   RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDIS-----KAVA----- 51

Query: 356 EMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 415
                      +D  S  ++ ++      P + +     ++    +  L +V+A   RV 
Sbjct: 52  -----------RDKKSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA-ENRVI 99

Query: 416 GIVSLSDIFK 425
           GI++  DI K
Sbjct: 100 GIITSEDISK 109

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.4 bits (85), Expect = 0.004
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 22/131 (16%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 355
            P+  +RP A++  A  LL++   +++P+V+    ++ I  R D+     +KA  H  L 
Sbjct: 2   SPVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDV-----EKALRH-GLG 54

Query: 356 EMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 415
              +          Y   ++ +       P   L +V E +    + R+ +VE G  R+ 
Sbjct: 55  HAPV--------KDYMSTDVVTVP-----PDTPLSEVQELMVEHDIGRVPVVEDG--RLV 99

Query: 416 GIVSLSDIFKF 426
           GIV+ +D+ + 
Sbjct: 100 GIVTRTDLLRT 110

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	429
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	100.0
COG2524	294	Predicted transcriptional regulator, contains C-te	99.76
COG2524	294	Predicted transcriptional regulator, contains C-te	99.64
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.64
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.62
COG3620	187	Predicted transcriptional regulator with C-termina	99.61
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.6
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.58
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.57
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.57
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.55
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.53
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.53
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.53
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.53
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.52
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.51
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.5
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.5
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.5
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.49
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.49
cd02859	79	AMPKbeta_GBD_like AMP-activated protein kinase (AM	99.49
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.48
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.48
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.48
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.48
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.48
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.47
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.47
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.47
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.47
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.47
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.47
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.46
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.46
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.46
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.46
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.46
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.46
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.45
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.45
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.45
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.45
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.45
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.45
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.45
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.45
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.44
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.44
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.44
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.44
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	99.43
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.43
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.43
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.43
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.43
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.43
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.42
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.42
COG3620	187	Predicted transcriptional regulator with C-termina	99.42
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.42
COG2905	610	Predicted signal-transduction protein containing c	99.42
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.42
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.4
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.4
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.4
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.4
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.4
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.4
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.39
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.39
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.39
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.38
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.38
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.38
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.37
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.37
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.36
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.36
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.36
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.36
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.35
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.34
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.34
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.33
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.33
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.33
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.32
COG4109	432	Predicted transcriptional regulator containing CBS	99.32
COG0517	117	FOG: CBS domain [General function prediction only]	99.31
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.31
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.31
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.31
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.31
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.31
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.3
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.3
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.29
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.29
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.29
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.29
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.28
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.28
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.28
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.28
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.27
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.27
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.26
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.26
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.26
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.26
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.25
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.25
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.25
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.24
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.24
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.24
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.24
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.24
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.24
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.23
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.23
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.23
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.23
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.23
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.23
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.23
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.22
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.22
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.22
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.22
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.21
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.21
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.21
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.21
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.2
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.2
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.2
COG0517	117	FOG: CBS domain [General function prediction only]	99.2
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.19
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.19
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.19
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.19
PRK11573	413	hypothetical protein; Provisional	99.18
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.17
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.17
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.16
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.16
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.16
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.16
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.15
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.14
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.14
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.13
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.13
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.13
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.13
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.12
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.11
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.11
COG2905	610	Predicted signal-transduction protein containing c	99.1
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.1
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.09
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.09
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.09
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.08
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.07
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.07
KOG1616	289	consensus Protein involved in Snf1 protein kinase	99.05
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.05
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.05
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.04
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.03
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.97
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.94
PRK11573	413	hypothetical protein; Provisional	98.94
COG4109	432	Predicted transcriptional regulator containing CBS	98.93
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.92
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.91
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.88
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.84
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.83
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.83
cd02861	82	E_set_proteins_like E or "early" set-like proteins	98.82
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.76
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.7
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.66
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.57
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.56
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.43
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.36
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.31
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.28
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.12
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	97.98
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	97.96
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.88
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.79
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.78
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	97.7
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.62
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.3
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.15
cd02858	85	Esterase_N_term Esterase N-terminal domain. Estera	96.87
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	96.86
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.4
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	95.26
cd02688	83	E_set E or "early" set of sugar utilizing enzymes	94.74
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.48
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	92.56
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	88.13

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=100.00  E-value=1.8e-34  Score=283.74  Aligned_cols=303  Identities=31%  Similarity=0.563  Sum_probs=258.0

Q ss_pred             HHHHHHHHhhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCC
Q 014157           93 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN  172 (429)
Q Consensus        93 ~~~~~~~fl~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~  172 (429)
                      ....+..|++.++||+.+|.+++++++|..+++.+||.+|..++.+++|+||....++.|++++.||+.++...+..+..
T Consensus        55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~~  134 (381)
T KOG1764|consen   55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKSS  134 (381)
T ss_pred             hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCCc
Confidence            56688899999999999999999999999999999999999999999999999999999999999999999888764221


Q ss_pred             C-ChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEE
Q 014157          173 L-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA  251 (429)
Q Consensus       173 l-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgil  251 (429)
                      . ..+.+++..+..|++.....       +....++++.+.|..++.++...+.+++++++||.|  .+.+   .+++++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~il  202 (381)
T KOG1764|consen  135 LDNIEVLEDSQLSKRREVECLL-------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLYIL  202 (381)
T ss_pred             HHHHhhhhhhhccccchhhhhh-------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceeeeh
Confidence            1 23445555555555542221       112345559999999999999999999999999996  4666   799999


Q ss_pred             ehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcE
Q 014157          252 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL  331 (429)
Q Consensus       252 t~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~l  331 (429)
                      |++.|++++..+.+... ...++..+++++.+|+|.         .+..+..++++.+|+++|.+.+++++||||..|+.
T Consensus       203 t~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~  272 (381)
T KOG1764|consen  203 TQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENGKK  272 (381)
T ss_pred             hHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCce
Confidence            99999999988766644 456789999999999996         58899999999999999999999999999999999


Q ss_pred             EEEEeHHHHHHHHhccccccccccccc-HHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCC
Q 014157          332 LDIYCRSDITALAKDKAYAHINLSEMT-IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG  410 (429)
Q Consensus       332 vGivt~~Di~~~~~~~~~~~l~l~~~~-v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~  410 (429)
                      +|+++..|+..+...+.|..++   .+ +.+.+..+.       ....++++|.++++|.+++.+|..+++||++||| +
T Consensus       273 v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd-~  341 (381)
T KOG1764|consen  273 VGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVD-E  341 (381)
T ss_pred             ecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEEEEc-C
Confidence            9999999999999888886654   44 666664432       1134689999999999999999999999999999 5


Q ss_pred             CCeEEEEEeHHHHHHHhh
Q 014157          411 SKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       411 ~g~l~GiIs~~Dil~~l~  428 (429)
                      +|+++|+||++|++.++.
T Consensus       342 ~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  342 DGVLVGVISLSDILSYLV  359 (381)
T ss_pred             CCcEEEEeeHHHHHHHHH
Confidence            899999999999999875

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.76  E-value=7.8e-18  Score=151.05  Aligned_cols=120  Identities=20%  Similarity=0.380  Sum_probs=110.3

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      +++++|.++++++.+++|+.+|.++|.++++++.||+|+ ++++|++|.+|+..+..++.+      +..++++|     
T Consensus       173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~------~~kV~~~M-----  240 (294)
T COG2524         173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNL------DAKVSDYM-----  240 (294)
T ss_pred             hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCc------cccHHHHh-----
Confidence            467789999999999999999999999999999999985 599999999999998887654      57899988     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                              .+.++++..++.+.+|++.|..++++||.|+|. +|+++|+||++||++.+.+
T Consensus       241 --------~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         241 --------RKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             --------ccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhc
Confidence                    558999999999999999999999999999995 8999999999999998864

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.64  E-value=1.9e-15  Score=135.83  Aligned_cols=122  Identities=19%  Similarity=0.359  Sum_probs=106.6

Q ss_pred             ccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccC
Q 014157          196 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK  275 (429)
Q Consensus       196 ~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~  275 (429)
                      +...++.+|+++++++.+++|+.+|++++.+++++.+||+|    ++   +++|++|.+||...++..            
T Consensus       170 Pk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd----~d---k~vGiit~~dI~~aia~g------------  230 (294)
T COG2524         170 PKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD----DD---KIVGIITLSDIAKAIANG------------  230 (294)
T ss_pred             CcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec----CC---ceEEEEEHHHHHHHHHcC------------
Confidence            34455678999999999999999999999999999999995    33   699999999999887653            


Q ss_pred             CccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          276 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       276 ~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                               ....+|+++|.++++++..++.+.+|+++|..+++.++.|+|.+|+++|++|+.||+..+.
T Consensus       231 ---------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         231 ---------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             ---------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence                     1223455669999999999999999999999999999999999999999999999987543

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.64  E-value=4.9e-15  Score=135.45  Aligned_cols=174  Identities=16%  Similarity=0.263  Sum_probs=130.7

Q ss_pred             CeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHH-HHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHh
Q 014157          148 ARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAW-KEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH  226 (429)
Q Consensus       148 ~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~-~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~  226 (429)
                      ++-+| ++..|+-..++.+.+. -+++.++|+.+--+.- +...+.  ..+-++.++|+++++++.+++++.+|.++|.+
T Consensus       198 ~~rvg-fs~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~--~~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~  273 (382)
T COG3448         198 SQRVG-FSSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRR--MGELTCADIMSRDVVTVSTDTSIDHARKLLQE  273 (382)
T ss_pred             hhccC-CCHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHH--hccccHHHhcCccceecCCcCChHHHHHHHHH
Confidence            34456 7889999999877542 2345566665422221 111111  12446678999999999999999999999999


Q ss_pred             cCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCC
Q 014157          227 NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS  306 (429)
Q Consensus       227 ~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~s  306 (429)
                      ++++.+||+|   +..   +++|++|++|+++.....+          -+.++.+    -.++++.+|+.++.++.++++
T Consensus       274 H~ikaLPV~d---~~~---rl~GiVt~~dl~~~a~~~p----------~qrlr~~----~~~~vk~imt~~v~tv~pdtp  333 (382)
T COG3448         274 HRIKALPVLD---EHR---RLVGIVTQRDLLKHARPSP----------FQRLRFL----RPPTVKGIMTTPVVTVRPDTP  333 (382)
T ss_pred             cCcccccccc---ccc---ceeeeeeHHHHhhccCcch----------HHHhhcc----CCCcccccccCcceeecCCCc
Confidence            9999999996   444   7999999999987332211          1111111    123577789999999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          307 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       307 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                      ..+++-++.+.+.+++||+|++|+++|+||+.|++..+.
T Consensus       334 a~~lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         334 AVELVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             HHHHHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHH
Confidence            999999999999999999999999999999999987554

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=1.4e-14  Score=120.36  Aligned_cols=119  Identities=39%  Similarity=0.692  Sum_probs=96.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+..+...+...   ....++.+.+..+       ..|
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~---~~~~~~~~~~~~~-------~~~   71 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYN---NLDLTVGEALERR-------SQD   71 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccc---cccCCHHHHHhhc-------ccC
Confidence            567899999999999999999999999999899999999999999765443221   1123344433111       123


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|++++
T Consensus        72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~~~Givt~~di~~~  120 (120)
T cd04641          72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVD-ENKRVEGIISLSDILQF  120 (120)
T ss_pred             CCCCeEEcCCCcHHHHHHHHHhcCccEEEEEC-CCCCEEEEEEHHHhhcC
Confidence            45688999999999999999999999999999 47999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.61  E-value=5.3e-15  Score=123.43  Aligned_cols=119  Identities=20%  Similarity=0.426  Sum_probs=102.1

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      +..+|..+++.+.+++++.+++++|.+++++.+||+++ ++++|-||..+|.+....+..   ++...+++++|      
T Consensus        67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e---~i~~~~vr~vM------  136 (187)
T COG3620          67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME---SIRSLRVREVM------  136 (187)
T ss_pred             HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc---chhhhhHHHHh------
Confidence            34458899999999999999999999999999999985 999999999999987755432   34467888877      


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                             ..++++|++++++..+-++|..++  .+.|++  +|+++||||+.||++++.|
T Consensus       137 -------~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e--~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         137 -------GEPFPTVSPDESLNVISQLLEEHP--AVLVVE--NGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             -------cCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe--CCceEEEEeHHHHHHHHhc
Confidence                   668999999999998888888776  477776  7999999999999998864

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.60  E-value=3.3e-15  Score=136.55  Aligned_cols=126  Identities=19%  Similarity=0.362  Sum_probs=107.4

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ..++|+++++++..++++.+|.++|.+++++.+||+|++.+++|+||++|+++......+.++.        ++    ..
T Consensus       247 cadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr--------~~----~~  314 (382)
T COG3448         247 CADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR--------FL----RP  314 (382)
T ss_pred             HHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh--------cc----CC
Confidence            4577999999999999999999999999999999999999999999999998755443332221        11    12


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      +...++|+.++.++.++++..+++-++.+.+.|++||+| +.|+++||||.+|++.++.
T Consensus       315 ~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld-~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLD-AAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             CcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEc-CCCcEEEEeeHHHHHHHHH
Confidence            333457788999999999999999999999999999999 5999999999999998764

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.58  E-value=2.8e-14  Score=116.88  Aligned_cols=110  Identities=9%  Similarity=0.241  Sum_probs=93.3

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.+|++.|.+.+.+.++|+|++|+++|+++..|+.+.... .     +.+.++.++|             
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~-~-----~~~~~v~~~~-------------   62 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN-D-----YETLKVCEVY-------------   62 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc-c-----ccccChhhee-------------
Confidence            46788999999999999998999999999988999999999999874221 1     1134566655             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||.+|++++
T Consensus        63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd-~~~~~~Giit~~di~~~  111 (111)
T cd04603          63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVD-KEGKLVGTIYERELLRF  111 (111)
T ss_pred             ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCeEEEEEEhHHhhcC
Confidence            44678999999999999999999999999999 47999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=7.5e-14  Score=114.90  Aligned_cols=111  Identities=19%  Similarity=0.351  Sum_probs=95.1

Q ss_pred             ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccC
Q 014157          298 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS  377 (429)
Q Consensus       298 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~  377 (429)
                      +.++.+++++.+|++.|.+.+...+||+|++|+++|+++.+|+.+.......   .....++.+++             .
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~~~-------------~   66 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG---PGCTAPVENVM-------------T   66 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC---CcccCCHHHHh-------------c
Confidence            5678999999999999999999999999999999999999999875532111   12245678776             4


Q ss_pred             CCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          378 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       378 ~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      .++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus        67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVD-ENARPLGVLNARDALK  113 (114)
T ss_pred             CCCeeECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEhHhhcc
Confidence            5788999999999999999999999999999 4789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.57  E-value=2.9e-14  Score=114.34  Aligned_cols=95  Identities=20%  Similarity=0.310  Sum_probs=85.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      .++++++++++.+|++.|.+++++++||+|++ |+++|++|..|+.+...                              
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------   51 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------   51 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence            46789999999999999999999999999974 89999999999975211                              


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEeHHHHHHH
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFKF  426 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~-g~l~GiIs~~Dil~~  426 (429)
                          +.++.+++++.+|+++|.+++++++||+|+ + |+++|+||.+|++++
T Consensus        52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~~   98 (98)
T cd04618          52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILKF   98 (98)
T ss_pred             ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhcC
Confidence                557999999999999999999999999994 6 899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.3e-13  Score=114.20  Aligned_cols=113  Identities=21%  Similarity=0.332  Sum_probs=94.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.+|++.|.+++.+++||+|++|+++|+++..|+.+....+.    .+...++.++|..           
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~~~~~-----------   66 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGVIMTR-----------   66 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHHHhCC-----------
Confidence            5678999999999999999899999999998899999999999987654221    1224567777621           


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC---CeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS---KRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~---g~l~GiIs~~Dil~  425 (429)
                      ...+.++.+++++.+++++|.+++++++||||+ +   |+++|+||.+||++
T Consensus        67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          67 MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence            125889999999999999999999999999994 5   69999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=2.8e-13  Score=111.35  Aligned_cols=112  Identities=20%  Similarity=0.285  Sum_probs=94.8

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ++..+.+++++.++++.|.+++.+.+||+|++ |+++|+++.+|+++.......   .....++.++|            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------   66 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---DPDRVNVYEIM------------   66 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---CCCccCHHHHh------------
Confidence            46789999999999999998999999999987 899999999999875433211   11235678776            


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                       ..++.++++++++.++++.|.+.+.+.+||+| + |+++|+||+.|++++
T Consensus        67 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          67 -TKPLISVSPDMDIKYCARLMERTNIRRAPVVE-N-NELIGIISLTDIFLA  114 (114)
T ss_pred             -cCCCeeECCCCCHHHHHHHHHHcCCCEeeEee-C-CEEEEEEEHHHhhcC
Confidence             44788999999999999999999999999999 4 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.53  E-value=1e-13  Score=135.87  Aligned_cols=120  Identities=14%  Similarity=0.265  Sum_probs=103.6

Q ss_pred             cccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          288 PKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       288 ~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      -+++++|.+  +++++.+++++.+|++.|.+++.+.+||+|++|+++|++|.+|+.+....+    ..+.+.++.++|  
T Consensus       202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~----~~~~~~~v~~im--  275 (326)
T PRK10892        202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMG----IDLRQASIADVM--  275 (326)
T ss_pred             CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcC----CCcccCCHHHhc--
Confidence            356777886  899999999999999999988888888899899999999999998765432    123346788876  


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                                 .+++.++.+++++.+|++.|.+++++++||+|  +|+++|+||+.||+++
T Consensus       276 -----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~  323 (326)
T PRK10892        276 -----------TPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             -----------CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence                       55789999999999999999999999999998  5899999999999975

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.53  E-value=2.8e-13  Score=111.48  Aligned_cols=112  Identities=18%  Similarity=0.334  Sum_probs=94.6

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+.......    ....++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~-------------   64 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA----GEPSAVDEVA-------------   64 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc----cccccHHHhc-------------
Confidence            46688899999999999999999999999989999999999999876543211    1123466655             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC--CeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~--g~l~GiIs~~Dil~~  426 (429)
                      ..++.+|.+++++.++++.|.+++.+++||+|+ +  |+++|+||.+||+++
T Consensus        65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence            457889999999999999999999999999994 5  799999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.53  E-value=9.1e-14  Score=116.48  Aligned_cols=113  Identities=17%  Similarity=0.272  Sum_probs=94.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.++++.|.+++++++||+|++|+++|+++.+|+++....+..    ..+.++.++|             
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~----~~~~~v~~im-------------   65 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV----QPSDPVSKAL-------------   65 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc----CCCCcHHHHh-------------
Confidence            57889999999999999999999999999988999999999999875543221    1246888887             


Q ss_pred             CCCceEEcCCCCHHHHHHHHH---------cCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          377 SQRCQMCLPSDTLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~---------~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                      ..++.++.+++++.++.+.|.         +.+.+++||+| ++|+++|+||.+||++++
T Consensus        66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE-KQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             hccceecCCCCCHHHHHhhcccCCceEEEeccccccccccc-cccceEEEEehhHhhhhC
Confidence            457889999999999999653         33678889998 579999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.4e-13  Score=110.37  Aligned_cols=97  Identities=46%  Similarity=0.726  Sum_probs=85.6

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhh
Q 014157          114 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  193 (429)
Q Consensus       114 ~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  193 (429)
                      +++++++++.|+.+|++.|.++++.++||+|++.++++|++|..|++.++                              
T Consensus         1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~------------------------------   50 (98)
T cd04618           1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILIL------------------------------   50 (98)
T ss_pred             CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhe------------------------------
Confidence            37899999999999999999999999999997668999999999986432                              


Q ss_pred             hcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHH
Q 014157          194 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK  258 (429)
Q Consensus       194 ~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~  258 (429)
                                 .  ++++.+++++.+|+++|.+++++++||++.  ++|   +++|++|.+|+++
T Consensus        51 -----------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~   97 (98)
T cd04618          51 -----------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILK   97 (98)
T ss_pred             -----------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhc
Confidence                       0  568999999999999999999999999962  236   7999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.51  E-value=3.7e-13  Score=112.10  Aligned_cols=117  Identities=22%  Similarity=0.372  Sum_probs=95.6

Q ss_pred             CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------cccccccHHHHHhcCCCC
Q 014157          296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDS  369 (429)
Q Consensus       296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~------l~l~~~~v~~~l~~~~~~  369 (429)
                      +++.++.+++++.++++.|.+.+++++||++++|+++|+++.+|++..........      ......++.+++      
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------   75 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIM------   75 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhc------
Confidence            36788999999999999999999999999998899999999999987554321100      001123455554      


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                             ..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|++++
T Consensus        76 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvit~~di~~~  124 (124)
T cd04600          76 -------SPPVVTVRPDTPIAELVPLLADGGHHHVPVVD-EDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             -------cCCCeeeCCCCcHHHHHHHHHhcCCCceeEEc-CCCCEEEEEEhHHhhcC
Confidence                   55788999999999999999999999999999 48999999999999863

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=7.5e-13  Score=108.08  Aligned_cols=112  Identities=23%  Similarity=0.461  Sum_probs=94.5

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+.++.++.++++.|.+.+++.+||+|++++++|+++..|+++.......   .....++.+++             
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~---~~~~~~~~~~~-------------   65 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA---SALDTPVSEIM-------------   65 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC---CccccCHHHhc-------------
Confidence            46678999999999999999999999999988999999999999875543211   11134677765             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.++++.|.+.+.+++||++ + |+++|+||..||+++
T Consensus        66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  113 (113)
T cd04623          66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD-G-GKLVGIVSIGDVVKA  113 (113)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe-C-CEEEEEEEHHHhhcC
Confidence            45788999999999999999999999999999 3 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.50  E-value=1.8e-13  Score=139.39  Aligned_cols=214  Identities=14%  Similarity=0.188  Sum_probs=156.3

Q ss_pred             eeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHh---
Q 014157          150 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH---  226 (429)
Q Consensus       150 ~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~---  226 (429)
                      +..-++..|+.+++..+..   ....+-+....-.+.......+.|+++.+|++|++++++++++.|+.+|++.|.+   
T Consensus        86 ~~~~l~~dd~~~ll~~l~~---~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~  162 (449)
T TIGR00400        86 MINEMNLDDVIDLLEEVPA---NVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAK  162 (449)
T ss_pred             HHHcCChhHHHHHHHhCCH---HHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCC
Confidence            3344666666666644321   1112233444555555566777888999999999999999999999999999975   


Q ss_pred             --cCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCC
Q 014157          227 --NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPS  304 (429)
Q Consensus       227 --~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~  304 (429)
                        ++...++|+|   +.+   +++|+++.+|++..      .       ...+            ++++|.+++.++.++
T Consensus       163 ~~~~~~~v~Vvd---~~~---~l~GvV~l~dLl~a------~-------~~~~------------v~~im~~~~~~v~~~  211 (449)
T TIGR00400       163 TKEDIYTLYVTN---ESK---HLKGVLSIRDLILA------K-------PEEI------------LSSIMRSSVFSIVGV  211 (449)
T ss_pred             CccceeEEEEEC---CCC---eEEEEEEHHHHhcC------C-------CCCc------------HHHHhCCCCeeECCC
Confidence              4567788885   345   79999999998631      0       0122            333477788899999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCCCceEEc
Q 014157          305 ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCL  384 (429)
Q Consensus       305 ~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~  384 (429)
                      +++.+|++.|.+++...+||+|++|+++|+||.+|+++.....          ..++++..             ...+..
T Consensus       212 ~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~----------~~ed~~~~-------------~gv~~~  268 (449)
T TIGR00400       212 NDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE----------ATEDFYMI-------------AAVKPL  268 (449)
T ss_pred             CCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh----------hHHHHHHh-------------cCCCCC
Confidence            9999999999999999999999999999999999999877542          12566532             233444


Q ss_pred             CCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          385 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       385 ~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      +++++.+++..|.+++..+|+|.-     +.|++| ..++..
T Consensus       269 ~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~  304 (449)
T TIGR00400       269 DDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN  304 (449)
T ss_pred             cchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence            578889999999999998887763     456666 444443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.50  E-value=3.1e-13  Score=110.95  Aligned_cols=111  Identities=19%  Similarity=0.347  Sum_probs=92.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ++.++.+++++.+|++.|.+++ .+.+||+|++|+++|+++..|++.......      ...++.++|..          
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~------~~~~v~~~~~~----------   65 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW------AQTTVIQVMTP----------   65 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc------cccchhhhhcc----------
Confidence            4678899999999999987665 889999998899999999999987654211      13567777632          


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                       ..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++
T Consensus        66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~-~~~~~~Gvl~~~di~~  113 (114)
T cd04801          66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVE-DSGQVIGLITEADLLR  113 (114)
T ss_pred             -cccceEECCCCcHHHHHHHHHHCCCCeeEEEc-CCCcEEEEEeccceec
Confidence             12466899999999999999999999999999 4789999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4e-13  Score=112.61  Aligned_cols=124  Identities=22%  Similarity=0.362  Sum_probs=92.8

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      .+.++.+++++.++++.|.+++++++||+|++|+++|+++..|+++.......    ....+....+............+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~   77 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDD----LLLYRTITFKELSEKFTDSDGVK   77 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcch----hhcccchhhhhhhhhcccccccc
Confidence            46789999999999999999999999999989999999999999876543211    00111100000000000011134


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||.+||++
T Consensus        78 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dil~  125 (126)
T cd04642          78 SRPLITCTPSSTLKEVITKLVANKVHRVWVVD-EEGKPIGVITLTDIIS  125 (126)
T ss_pred             cCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC-CCCCEEEEEEHHHHhc
Confidence            56789999999999999999999999999999 4799999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=6e-13  Score=108.55  Aligned_cols=110  Identities=22%  Similarity=0.432  Sum_probs=94.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.+......      .+.++.+++             
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~-------------   62 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG------PDAPVRGVM-------------   62 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC------CCCcHHHHh-------------
Confidence            4567899999999999998888999999998899999999999987654321      124677766             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||..|+.++
T Consensus        63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~dl~~~  111 (111)
T cd04639          63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVD-GSGRLVGLVTLENVGEL  111 (111)
T ss_pred             cCCCcEECCCCcHHHHHHHHHhcCCceeeEEc-CCCCEEEEEEHHHhhcC
Confidence            44788999999999999999999999999999 46999999999999753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD)

Probab=99.49  E-value=1.9e-14  Score=110.25  Aligned_cols=39  Identities=41%  Similarity=0.597  Sum_probs=37.5

Q ss_pred             cccCCceeEEEEEECCeeeecCCCCcccCCCCCcceEEE
Q 014157            2 FFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLL   40 (429)
Q Consensus         2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~~n~~~   40 (429)
                      ++||||.|+|||+|||+|++||++|++.|++|+.||+|+
T Consensus        41 ~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~i~   79 (79)
T cd02859          41 LRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNVID   79 (79)
T ss_pred             EEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeeeEC
Confidence            689999999999999999999999999999999999984

AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.48  E-value=3.8e-13  Score=131.52  Aligned_cols=119  Identities=13%  Similarity=0.232  Sum_probs=102.9

Q ss_pred             ccCCCCCCC--ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          289 KIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       289 ~v~~~~~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      +|+++|.++  +.++++++++.+|++.|.+++...+||+|++|+++|+++..|+.+....+..     .+.++.++|   
T Consensus       198 ~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~-----~~~~v~~im---  269 (321)
T PRK11543        198 KVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA-----LTTPVNEAM---  269 (321)
T ss_pred             HHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC-----cCCcHHHhc---
Confidence            466778887  9999999999999999998899999999999999999999999876543211     134577766   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                                .+++.++.+++++.+|++.|.++++.++|||| ++|+++|+||+.|++++
T Consensus       270 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        270 ----------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVD-ENGKLTGAINLQDFYQA  318 (321)
T ss_pred             ----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHhc
Confidence                      55788999999999999999999999999999 47899999999999875

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.48  E-value=1.3e-12  Score=106.33  Aligned_cols=107  Identities=21%  Similarity=0.447  Sum_probs=93.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+.+++++.++++.|.+++++.+||+|++|+++|+++..++++......        .++.+++             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~~~-------------   61 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVEDIM-------------   61 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHHhc-------------
Confidence            5778999999999999999999999999998899999999999987554321        2366654             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+++.+.+||++ ++|+++|+||+.|+++
T Consensus        62 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~v~~~di~~  109 (110)
T cd04605          62 TRNVITATPDEPIDVAARKMERHNISALPVVD-AENRVIGIITSEDISK  109 (110)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHhCCCEEeEEC-CCCcEEEEEEHHHhhh
Confidence            45788999999999999999999999999999 4899999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.48  E-value=1.2e-12  Score=107.34  Aligned_cols=110  Identities=18%  Similarity=0.302  Sum_probs=93.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++..++++.++++.|.+.+.+.++|+|++|+++|+++.+|+.+.......     ...++.+++             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~-------------   64 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS-----LDDPVSEVM-------------   64 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC-----cCCCHHHhh-------------
Confidence            45678999999999999998899999999989999999999999875543211     134677776             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+++.+++||+| ++|+++|+||.+||+.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  112 (113)
T cd04607          65 NRNPITAKVGSSREEILALMRERSIRHLPILD-EEGRVVGLATLDDLLS  112 (113)
T ss_pred             cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEhHHhcc
Confidence            44688999999999999999999999999999 4899999999999974

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=1e-12  Score=107.55  Aligned_cols=111  Identities=20%  Similarity=0.353  Sum_probs=94.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+.+.......    +...++.++|             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~-------------   64 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVREVM-------------   64 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHHhc-------------
Confidence            36778999999999999999999999999988999999999999875432211    2235677765             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++..++++.++++.|.+++.+++||+| ++|+++|+||..||++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          65 NSPVITIDANDSIAKARWLMSNNNISRLPVLD-DKGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCCeeeEEC-CCCeEEEEEEHHHhhc
Confidence            44788999999999999999999999999999 4789999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=5.4e-13  Score=106.46  Aligned_cols=95  Identities=18%  Similarity=0.376  Sum_probs=85.5

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      +++.+.+++++.+|++.|.+.+++.+||+|++|+++|+++.+|+....                                
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~--------------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS--------------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence            567889999999999999999999999999899999999999997521                                


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                        .+.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|++++
T Consensus        50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~~~~Giit~~di~~~   96 (96)
T cd04614          50 --EVVTATKRTTVSECAQKMKRNRIEQIPIIN-GNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             --CcEEecCCCCHHHHHHHHHHhCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence              155789999999999999999999999999 47899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.1e-12  Score=108.85  Aligned_cols=116  Identities=17%  Similarity=0.351  Sum_probs=95.4

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-----ccccccHHHHHhcCCCCCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-----NLSEMTIHQALQLGQDSYS  371 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l-----~l~~~~v~~~l~~~~~~~~  371 (429)
                      ++.++.+++++.++++.|.+.+++.+||++++|+++|+++..++.+..........     .....++.+++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------   73 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVM--------   73 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhh--------
Confidence            46788999999999999999999999999988999999999999876543211100     01234566665        


Q ss_pred             cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                           ..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..|++++
T Consensus        74 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dl~~~  122 (122)
T cd04803          74 -----KTDVLTVTPDTPLREAAEIMVENKIGCLPVVD-DKGTLVGIITRSDFLRL  122 (122)
T ss_pred             -----CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEc-CCCCEEEEEEHHHhhcC
Confidence                 45788999999999999999999999999999 47899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.47  E-value=8.7e-13  Score=107.27  Aligned_cols=105  Identities=20%  Similarity=0.355  Sum_probs=92.6

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.++++.|.+++.+.+||+|++|+++|+++..++....          ...++.+++             
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~~~-------------   59 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEKVM-------------   59 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHHHh-------------
Confidence            567889999999999999998999999999999999999999997421          134677776             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+++.+.+||+| ++|+++|+||..|+++
T Consensus        60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~G~it~~di~~  107 (108)
T cd04596          60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVD-DNKKLLGIISRQDVLK  107 (108)
T ss_pred             cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEc-CCCCEEEEEEHHHhhc
Confidence            44688999999999999999999999999999 5899999999999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1.7e-12  Score=106.09  Aligned_cols=110  Identities=16%  Similarity=0.372  Sum_probs=94.4

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+..++++.++++.|.+.+.+++||+|++|+++|+++..|+++....+..     ...++.++|             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~-------------   63 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGID-----LDTPVSEIM-------------   63 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccCC-----CccCHHHhc-------------
Confidence            46788999999999999999999999999988999999999999876554321     134677665             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++..++++.++++.|.+++...+||++ ++|+++|++|..|+++
T Consensus        64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~g~~~Gilt~~dl~~  111 (112)
T cd04624          64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVD-KGGELVGVISIRDLVR  111 (112)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCccEEEEEc-CCCcEEEEEEHHHhcc
Confidence            45788999999999999999999999999999 4799999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=1e-12  Score=109.66  Aligned_cols=116  Identities=18%  Similarity=0.348  Sum_probs=94.6

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccc-------cccccccHHHHHhcCCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAH-------INLSEMTIHQALQLGQD  368 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~-------l~l~~~~v~~~l~~~~~  368 (429)
                      ++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|+.+.........       ......++.+++     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   76 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM-----   76 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh-----
Confidence            46788999999999999999999999999987 99999999999987654321100       001123556654     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                              ..+++++++++++.++++.|.+.+.+.+||+| ++|+++|+||..||+++
T Consensus        77 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~~Gvit~~di~~~  125 (125)
T cd04631          77 --------TRNVITITPDDSIKDAAELMLEKRVGGLPVVD-DDGKLVGIVTERDLLKA  125 (125)
T ss_pred             --------cCCceEeCCCCcHHHHHHHHHHcCCceEEEEc-CCCcEEEEEEHHHhhcC
Confidence                    45789999999999999999999999999999 47999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.47  E-value=6.3e-13  Score=127.47  Aligned_cols=119  Identities=14%  Similarity=0.406  Sum_probs=100.4

Q ss_pred             cCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.+  .+.++..++++.++++.+.+++++++||++++ ++++|+++.+|++.......      ...++.+++   
T Consensus        69 V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~------~~~~l~~l~---  139 (292)
T PRK15094         69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDKVL---  139 (292)
T ss_pred             EeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC------CcCCHHHHc---
Confidence            4455776  58999999999999999999999999999875 79999999999986543211      123466665   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                 ++++++++++++.++++.|.+++.+.++||| +.|.++|+||+.||+..++|
T Consensus       140 -----------r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD-e~G~viGiVTleDIle~ivG  190 (292)
T PRK15094        140 -----------RQAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  190 (292)
T ss_pred             -----------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEe-CCCCEEEEeEHHHHHHHHhC
Confidence                       2456899999999999999999999999999 58999999999999999876

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.47  E-value=1.4e-12  Score=106.72  Aligned_cols=112  Identities=19%  Similarity=0.393  Sum_probs=95.6

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+.......    ....++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~~~-------------   64 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASDIM-------------   64 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHHhc-------------
Confidence            46789999999999999999899999999988999999999999876543211    1235677766             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCC-CCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG-SKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~-~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.++++.|.+.+.+++||+| + .|+++|++|..|++++
T Consensus        65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~~  114 (114)
T cd04613          65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLSA  114 (114)
T ss_pred             cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhcC
Confidence            45788999999999999999999999999999 5 6899999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.46  E-value=1.4e-12  Score=105.46  Aligned_cols=105  Identities=20%  Similarity=0.243  Sum_probs=90.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+...           .++.+++             
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~~~-------------   57 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGDHA-------------   57 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhhhc-------------
Confidence            4678899999999999999889999999998899999999999986421           2355554             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ...+.++.+++++.++++.|.+++...+||+| ++|+++|+||.+|++++
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~~l~~~  106 (106)
T cd04582          58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVD-EDGRYVGEVTQRSIADY  106 (106)
T ss_pred             ccCCEEECCCCCHHHHHHHHHHCCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence            44677899999999999999999999999999 57999999999999863

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=2e-12  Score=105.51  Aligned_cols=109  Identities=20%  Similarity=0.342  Sum_probs=93.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+++++++.++++.|.+.+.+++||+|++|+++|+++..|+..+......     .+.++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~-------------   63 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFNIV-------------   63 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHHHh-------------
Confidence            46788999999999999999999999999988999999999999875433211     134677766             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.+|++.|.+++..++||+| + |+++|+||..|++.
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~  110 (111)
T cd04626          64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD  110 (111)
T ss_pred             cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence            45788999999999999999999999999999 4 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.2e-12  Score=107.17  Aligned_cols=113  Identities=19%  Similarity=0.349  Sum_probs=94.3

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.++++.|.+.+.+.+||+|++++++|+++..++++......+.  .....++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~--~~~~~~v~~~~-------------   66 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYH--CDGVATVRDIM-------------   66 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhc--cCCCccHHHHh-------------
Confidence            467889999999999999988889999999899999999999998755432211  01235677766             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..||+++
T Consensus        67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvit~~di~~~  114 (114)
T cd04629          67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD-D-GKLVGQISRRDVLRA  114 (114)
T ss_pred             ccCceEECCCCcHHHHHHHHHHhCCCccCEEE-C-CEEEEEEEHHHHhcC
Confidence            44688899999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.9e-12  Score=106.44  Aligned_cols=114  Identities=18%  Similarity=0.300  Sum_probs=92.1

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-ccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-NLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l-~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      .++++..++++.++++.|.+.+++.+||+|++|+++|+++.+|+.+.......... .+.+.++.+++            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~------------   69 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVM------------   69 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHh------------
Confidence            46789999999999999999999999999988999999999999876543211000 00134667765            


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                       ..++.++.+++++.+|++.|.+.+  .+||+| ++|+++|+||..|++++
T Consensus        70 -~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~-~~~~~~Gvit~~dil~~  116 (116)
T cd04643          70 -NTDVPVIIDDADIEEILHLLIDQP--FLPVVD-DDGIFIGIITRREILKA  116 (116)
T ss_pred             -cCCCceecCCCCHHHHHHHHhcCC--ceeEEe-CCCeEEEEEEHHHhhcC
Confidence             457889999999999999998865  599999 58999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.46  E-value=2.6e-12  Score=104.62  Aligned_cols=108  Identities=24%  Similarity=0.394  Sum_probs=93.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+..++++.++++.|.+.+++++||+++ |+++|+++..|+++....+..      ..++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~------~~~v~~~~-------------   61 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE------LAKVKDVM-------------   61 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc------ccCHHHHh-------------
Confidence            5678899999999999999999999999998 999999999999986544211      24577765             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+.+.+.+||++ ++|+++|+||..|+++
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~  109 (110)
T cd04588          62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTD-DEGRPVGIITRTDILR  109 (110)
T ss_pred             cCCceEECCCCCHHHHHHHHHhcCCCEEEEEC-CCCCEEEEEEhHHhhc
Confidence            44788999999999999999999999999999 4799999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.9e-12  Score=110.09  Aligned_cols=115  Identities=15%  Similarity=0.280  Sum_probs=93.4

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-------------------ccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-------------------NLSEM  357 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l-------------------~l~~~  357 (429)
                      ++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++..........                   .....
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL   81 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence            45678999999999999999999999999999999999999999876542211000                   00123


Q ss_pred             cHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          358 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       358 ~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ++.++|             ..++.++.+++++.++++.|.+.+.+++||++  +|+++|+||.+|++++
T Consensus        82 ~v~~~~-------------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~Gvit~~di~~~  135 (135)
T cd04621          82 VAEDIM-------------TEEIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDICRE  135 (135)
T ss_pred             cHHHhc-------------CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe--CCEEEEEEEHHHHhhC
Confidence            455554             55788999999999999999999999999999  3899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.45  E-value=2.8e-12  Score=104.63  Aligned_cols=110  Identities=20%  Similarity=0.301  Sum_probs=93.3

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      +++.+..+.++.++++.|.+.+...++|+|+ |+++|+++..|+.+.......    ..+.++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~-------------   63 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL----PSSTPVGEIA-------------   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC----CCCCCHHHHh-------------
Confidence            4568899999999999999889999999997 899999999999876543211    1245677776             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.++++.|.+++.+.+||+|  +|+++|+||..|+++|
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~~  111 (111)
T cd04589          64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLSF  111 (111)
T ss_pred             CCCcEEECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhcC
Confidence            44788999999999999999999999999999  4899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.4e-12  Score=108.34  Aligned_cols=116  Identities=20%  Similarity=0.355  Sum_probs=93.5

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccc-cccc----ccccccHHHHHhcCCCCCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHI----NLSEMTIHQALQLGQDSYS  371 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~-~~~l----~l~~~~v~~~l~~~~~~~~  371 (429)
                      ++.++.+++++.++++.|.+.+++++||+|++|+++|+++..|+++...... ....    .....++.+++        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------   73 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIM--------   73 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHh--------
Confidence            4678999999999999999889999999998899999999999986421110 0000    01134555554        


Q ss_pred             cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                           ..++.++..++++.++++.|.+++.+++||+| ++|+++|++|+.|++++
T Consensus        74 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~g~~~Gvit~~dl~~~  122 (122)
T cd04635          74 -----STPVYSVTPDDSIATAVELMLEHDIGRLPVVN-EKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             -----cCCCeeECCCCCHHHHHHHHHHcCCCeeeEEc-CCCcEEEEEEhHHhhcC
Confidence                 45788999999999999999999999999999 47999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.1e-12  Score=109.45  Aligned_cols=119  Identities=13%  Similarity=0.250  Sum_probs=90.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+..      ..+..+.... . .......
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~------~~~~~~~~~~-~-~~~~~~~   73 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENAR------SFPGLDPLYP-I-PLRDLTI   73 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHH------hccchhhhhh-h-hhhhccc
Confidence            46788999999999999998899999999987 999999999999875533211      0000000000 0 0000013


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHH
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF  424 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil  424 (429)
                      |..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||++||-
T Consensus        74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~vGiit~~di~  121 (123)
T cd04627          74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVD-NQGNLIGNISVTDVR  121 (123)
T ss_pred             CcCCceEeCCCCCHHHHHHHHHHcCCceEEEEC-CCCcEEEEEeHHHhh
Confidence            456788999999999999999999999999999 479999999999984

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.45  E-value=2.6e-12  Score=104.20  Aligned_cols=106  Identities=18%  Similarity=0.366  Sum_probs=92.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+.++.++.++++.|.+.++.++||+|++|+++|+++..|+......         ..++.++|             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~-------------   60 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLEDIM-------------   60 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhHhh-------------
Confidence            56788999999999999999999999999988999999999999865422         13466655             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ...+.++++++++.++++.|.+.+.+++||++ ++|+++|+||..|+++
T Consensus        61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~-~~g~~~Gvit~~~l~~  108 (109)
T cd04583          61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVD-EDGKLVGLITRSSLVD  108 (109)
T ss_pred             cCCceEECCCCcHHHHHHHHHHcCCceeeEEC-CCCeEEEEEehHHhhc
Confidence            44688899999999999999999999999999 4899999999999975

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.8e-12  Score=109.52  Aligned_cols=115  Identities=17%  Similarity=0.341  Sum_probs=92.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc----------------cccccHH
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN----------------LSEMTIH  360 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~----------------l~~~~v~  360 (429)
                      ++.++.+++++.++++.|.+.+++++||+|++|+++|+++..++.+...........                +...++.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE   81 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence            467889999999999999988999999999889999999999998765432110000                0001444


Q ss_pred             HHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          361 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       361 ~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      +++             .+++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus        82 ~~~-------------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~  132 (132)
T cd04636          82 EIM-------------TKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS  132 (132)
T ss_pred             Hhc-------------cCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence            443             55788999999999999999999999999999 4 999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=2.1e-12  Score=108.43  Aligned_cols=117  Identities=23%  Similarity=0.417  Sum_probs=93.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc-c--------cccccccHHHHHhcCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA-H--------INLSEMTIHQALQLGQ  367 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~-~--------l~l~~~~v~~~l~~~~  367 (429)
                      ++..+.+++++.+|++.|.+.+.+.+||+|++|+++|++|..|+.++....... .        ......++.+++    
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----   77 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAM----   77 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHh----
Confidence            456789999999999999999999999999889999999999998754221100 0        001123455554    


Q ss_pred             CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeC-CCCeEEEEEeHHHHHHH
Q 014157          368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA-GSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~-~~g~l~GiIs~~Dil~~  426 (429)
                               ..+++++.+++++.++++.|.+++.+.+||++. ++|+++|+||++||+++
T Consensus        78 ---------~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~  128 (128)
T cd04632          78 ---------SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA  128 (128)
T ss_pred             ---------cCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence                     557889999999999999999999999999851 36999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.45  E-value=2.3e-12  Score=105.49  Aligned_cols=112  Identities=16%  Similarity=0.354  Sum_probs=94.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.++.....    .....++.++|             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~----~~~~~~v~~~~-------------   65 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL----DILTLPVADVM-------------   65 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC----ccccCCHHHhh-------------
Confidence            4567899999999999998888899999998899999999999998765421    12234677776             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..+..++.+++++.++++.|.+++..++||+++ +|+++|+||..||+++
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~~  114 (114)
T cd04604          66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLRA  114 (114)
T ss_pred             ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhcC
Confidence            446788999999999999999999999999994 7999999999999863

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.45  E-value=3.2e-12  Score=133.87  Aligned_cols=194  Identities=16%  Similarity=0.182  Sum_probs=137.5

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc----
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP----  277 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~----  277 (429)
                      ++|.++++++++++++.+|++.|.+++++.+||+|   +++   +++|++|..|+.+.+.......  .......+    
T Consensus        72 dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i  143 (546)
T PRK14869         72 DLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVD---EEG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENI  143 (546)
T ss_pred             HhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHH
Confidence            35788999999999999999999999999999996   456   8999999999998776532100  00000111    


Q ss_pred             ------------------cccccCcccc-cccCCCCCCC-ceeecCCCCHHHHHHHHHhcCCCEEEEECCC---------
Q 014157          278 ------------------ICAIPVGTWV-PKIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDN---------  328 (429)
Q Consensus       278 ------------------v~~l~i~~~~-~~v~~~~~~~-~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---------  328 (429)
                                        .+.+.++... ..+.+.+.+. ++.+...   .++...+.+.++++++|+...         
T Consensus       144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~~~v~~l  220 (546)
T PRK14869        144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVSEDVLEL  220 (546)
T ss_pred             HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCCHHHHHH
Confidence                              1111111110 0111223332 3444332   344446778899999888632         


Q ss_pred             ---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccC-CCceEEcCCCCHHHHHHHHHcCCCCEE
Q 014157          329 ---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRL  404 (429)
Q Consensus       329 ---g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~v~~l  404 (429)
                         ..+.++.|..|....+..-.      ...++.++|             . +++.++++++++.++.+.|.+++.+++
T Consensus       221 a~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~iM-------------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~  281 (546)
T PRK14869        221 AKENGVTVISTPYDTFTTARLIN------QSIPVSYIM-------------TTEDLVTFSKDDYLEDVKEVMLKSRYRSY  281 (546)
T ss_pred             HHhCCCeEEEecccHHHHHHHhh------cCCCHHHhc-------------cCCCcEEECCCCcHHHHHHHHHhcCCCce
Confidence               35888999999887654321      146788877             4 579999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEeHHHHHHH
Q 014157          405 VIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       405 ~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      |||| ++|+++|+||+.|+++.
T Consensus       282 PVvd-~~g~lvGiit~~dl~~~  302 (546)
T PRK14869        282 PVVD-EDGKVVGVISRYHLLSP  302 (546)
T ss_pred             EEEc-CCCCEEEEEEHHHhhcc
Confidence            9999 58999999999999874

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.44  E-value=3.7e-12  Score=103.78  Aligned_cols=107  Identities=24%  Similarity=0.475  Sum_probs=93.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++..+.++.++.+.|.+.+.+++||+|+ |+++|+++..|+.+.....      +...++.+++             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~------~~~~~~~~~~-------------   62 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG------LGHAPVKDYM-------------   62 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc------cccCcHHHHh-------------
Confidence            5778899999999999999888999999997 9999999999998765332      1246778776             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.+++++|.+++.+++||++  +|+++|+||..|+++
T Consensus        63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~  109 (110)
T cd04595          63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR  109 (110)
T ss_pred             cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence            44788999999999999999999999999999  689999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.44  E-value=3.3e-12  Score=104.14  Aligned_cols=108  Identities=18%  Similarity=0.350  Sum_probs=92.1

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ++.++.+++++.+|++.|.+.+.+++||++++ |+++|+++..++.+.......      ..++..++            
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~------------   63 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRDLL------------   63 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHHHh------------
Confidence            46788999999999999999899999999987 999999999999987654211      13455543            


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                        .++.++.+++++.++++.|.+++.+++||+| ++|+++|+||++|+++
T Consensus        64 --~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~di~~  110 (111)
T cd04590          64 --RPPLFVPESTPLDDLLEEMRKERSHMAIVVD-EYGGTAGLVTLEDILE  110 (111)
T ss_pred             --cCCeecCCCCcHHHHHHHHHhcCCcEEEEEE-CCCCEEEEeEHHHhhc
Confidence              2578899999999999999999999999999 4899999999999975

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.44  E-value=1.4e-12  Score=110.66  Aligned_cols=115  Identities=21%  Similarity=0.372  Sum_probs=93.4

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc------c------------ccccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA------H------------INLSEMT  358 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~------~------------l~l~~~~  358 (429)
                      ++.++.+++++.++++.|.+.+++++||+|++++++|+++..|+.+........      .            ......+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK   82 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence            577899999999999999999999999999889999999999998754322100      0            0001234


Q ss_pred             HHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          359 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       359 v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      +.+++             ..++.++.+++++.++++.|.+.+.+++||+|  +|+++|+||+.|++++
T Consensus        83 v~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~  135 (135)
T cd04586          83 VADVM-------------TRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA  135 (135)
T ss_pred             HHHHh-------------CCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence            55544             55788999999999999999999999999999  6899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.44  E-value=1.4e-12  Score=132.54  Aligned_cols=113  Identities=13%  Similarity=0.218  Sum_probs=99.6

Q ss_pred             CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157          291 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       291 ~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~  370 (429)
                      .++|.++++++.+++++.++++.|.+++++++||+|++++++|+||.+|+....          ...++.++|       
T Consensus        92 ~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----------~~~~V~diM-------  154 (479)
T PRK07807         92 RDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----------RFTQVRDVM-------  154 (479)
T ss_pred             ccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----------cCCCHHHhc-------
Confidence            445778899999999999999999999999999999999999999999985321          024577776       


Q ss_pred             CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                            ..++.++++++++.+|++.|.+++++.+|||| ++|+++|+||.+||+++.
T Consensus       155 ------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD-~~g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        155 ------STDLVTLPAGTDPREAFDLLEAARVKLAPVVD-ADGRLVGVLTRTGALRAT  204 (479)
T ss_pred             ------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence                  55899999999999999999999999999999 489999999999999865

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=99.43  E-value=6.3e-12  Score=124.31  Aligned_cols=197  Identities=15%  Similarity=0.204  Sum_probs=148.0

Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhhhc
Q 014157          116 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR  195 (429)
Q Consensus       116 vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~  195 (429)
                      .+.+.+..++.+|...+.++++..+||.|.+.++.++++|..-++.++-....   .+....+-..++.++         
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~---~~~~~~~l~~s~~dl---------  231 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGR---LLPLPSLLSKSLSDL---------  231 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhc---ccccHHHhhCCHHHh---------
Confidence            38899999999999999999999999999888899999999999988855442   221223333333332         


Q ss_pred             ccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccC
Q 014157          196 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK  275 (429)
Q Consensus       196 ~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~  275 (429)
                         ++|  ....+..+..++++.+|++.|.+++++.+||++   ..|   ..+|.++..|+........-.      .+.
T Consensus       232 ---~ig--~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~---~~g---~~v~~~s~~Dv~~l~~~~~~~------~~~  294 (381)
T KOG1764|consen  232 ---GIG--TWSNIASISEDTPVIEALKIMSERRISALPVVD---ENG---KKVGNYSRFDVIHLAREGTYN------NLD  294 (381)
T ss_pred             ---Ccc--hhhhheeecCCCcHHHHHHHHHhcCcCcceEEc---CCC---ceecceehhhhhhhhhcCccC------ccc
Confidence               112  344789999999999999999999999999996   444   579999999998655443211      111


Q ss_pred             CccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          276 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       276 ~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      .+.    ++.+.. ........++++.++.++.+++..|..+++++++|||++|.++|++|..|++..+..
T Consensus       295 ~~~----l~~~~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~  360 (381)
T KOG1764|consen  295 LSC----LSEALS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVL  360 (381)
T ss_pred             hhH----HHHHhh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHh
Confidence            110    111110 001122358999999999999999999999999999999999999999999986654

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.3e-12  Score=104.94  Aligned_cols=111  Identities=20%  Similarity=0.350  Sum_probs=90.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ++.++..+.++.++++.|.+++ ...++|+| +|+++|+++..|+++....+.    .....++.+++            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~----~~~~~~i~~~~------------   64 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK----DLSDLPIGEVM------------   64 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC----CccccCHHHhc------------
Confidence            4567899999999999998877 66777777 589999999999987654321    11235677765            


Q ss_pred             cCCCceEEcCC--CCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          376 RSQRCQMCLPS--DTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       376 ~~~~~~~v~~~--~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                       ..++.++.++  +++.+|++.|.+++.+.+||+| ++|+++|+||+.|++++
T Consensus        65 -~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd-~~~~~~Gvit~~dl~~~  115 (115)
T cd04620          65 -TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLD-DQGQLIGLVTAESIRQV  115 (115)
T ss_pred             -CCCcEEEecccccCHHHHHHHHHHhCCceEEEEc-CCCCEEEEEEhHHhhcC
Confidence             4467788877  7899999999999999999999 47999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=5e-12  Score=103.10  Aligned_cols=109  Identities=20%  Similarity=0.389  Sum_probs=92.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++..+.++.++.+.|.+.+.+.+||+|+ ++++|+++..++.+.......    ....++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~-------------   63 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL----DPDTPVSEVM-------------   63 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC----CccCCHHHHh-------------
Confidence            5678899999999999999888999999987 999999999999864332211    1135677766             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+++.+++||++ + |+++|+||..|+++
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Giit~~di~~  110 (111)
T cd04800          64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD-D-GRLVGVISATDLLR  110 (111)
T ss_pred             CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEHHHhhc
Confidence            45788999999999999999999999999999 3 89999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=5.1e-12  Score=103.20  Aligned_cols=111  Identities=14%  Similarity=0.313  Sum_probs=90.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      .+.++.+++++.++++.|.+++.+.++|.+ +|+++|+++.+|+.+.......   .+...++.++|             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~-------------   64 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRAIM-------------   64 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHHHh-------------
Confidence            456789999999999999888887887776 5999999999999875542111   12235678776             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.+++++|.+++..++||+|  +|+++|+||.+||+++
T Consensus        65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~  112 (112)
T cd04625          65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence            34678899999999999999999999999999  5899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.43  E-value=1.2e-12  Score=137.11  Aligned_cols=284  Identities=13%  Similarity=0.158  Sum_probs=176.6

Q ss_pred             ccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhh--h
Q 014157          104 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET--H  181 (429)
Q Consensus       104 ~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~--~  181 (429)
                      .++.|++-  .++++++++.|+.+|++.|.+++++.+||.|.+ ++++|++|..|+...+......      +.+..  .
T Consensus        68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~------~~~~~~~~  138 (546)
T PRK14869         68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP------EILSKSPT  138 (546)
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch------hhhhhcCC
Confidence            56777773  478999999999999999999999999999964 7899999999999866543210      00110  0


Q ss_pred             hHHHHHHhhhh-hhcccC------------------CCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCC--
Q 014157          182 TISAWKEGKAY-LNRQID------------------SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--  240 (429)
Q Consensus       182 ~i~~~~~~~~~-~~~~~~------------------~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~--  240 (429)
                      ++..+.+.... +-+...                  .........++.+.....+   ...+.+.+++.++|..+..-  
T Consensus       139 t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g~~~~~  215 (546)
T PRK14869        139 SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAAIEAGVRLLIITGGAPVSE  215 (546)
T ss_pred             CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHHHHcCCCEEEECCCCCCCH
Confidence            11111110000 000000                  0000112235555433333   44678888999988853220  


Q ss_pred             -------CCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC-CCceeecCCCCHHHHHH
Q 014157          241 -------DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALN  312 (429)
Q Consensus       241 -------~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~-~~~~~v~~~~sl~~a~~  312 (429)
                             ..   .+.++.|..|.......-.         ...+            ++++|. ++++++.+++++.++.+
T Consensus       216 ~v~~la~~~---~i~ii~t~~dt~~t~~~l~---------~~~~------------V~~iM~~~~~~~~~~~~~~~~~~~  271 (546)
T PRK14869        216 DVLELAKEN---GVTVISTPYDTFTTARLIN---------QSIP------------VSYIMTTEDLVTFSKDDYLEDVKE  271 (546)
T ss_pred             HHHHHHHhC---CCeEEEecccHHHHHHHhh---------cCCC------------HHHhccCCCcEEECCCCcHHHHHH
Confidence                   11   4788888888876544321         1223            344487 78999999999999999


Q ss_pred             HHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc--cccccccccHHHHHhc----CCCCCCcccccCCCceEE---
Q 014157          313 LLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY--AHINLSEMTIHQALQL----GQDSYSPYELRSQRCQMC---  383 (429)
Q Consensus       313 ~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~--~~l~l~~~~v~~~l~~----~~~~~~~~~~~~~~~~~v---  383 (429)
                      .|.+++++.+||+|++|+++|++|.+|+++.......  ..... ......+-..    ..++....+++...++.+   
T Consensus       272 ~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~-~q~~~~~~~~~i~~iiDHH~~~~~~~~~pi~~~~~  350 (546)
T PRK14869        272 VMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEK-SQAVEGIEEAEILEIIDHHRLGDIQTSNPIFFRNE  350 (546)
T ss_pred             HHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccc-cccccchhhceEEEEecCCccCCCCCCCCcEEEee
Confidence            9999999999999999999999999999975432110  00000 0000000000    001111223444444433   


Q ss_pred             cCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          384 LPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       384 ~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      +...+..-+.+.|.+.++...|++.  +..+.||+|-++.+++
T Consensus       351 ~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~~  391 (546)
T PRK14869        351 PVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFKS  391 (546)
T ss_pred             eeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCccC
Confidence            4466777888999999998888887  4578899888887653

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=1.9e-12  Score=108.45  Aligned_cols=112  Identities=22%  Similarity=0.414  Sum_probs=89.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH-----HhcccccccccccccHHHHHhcCCCCCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL-----AKDKAYAHINLSEMTIHQALQLGQDSYS  371 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~-----~~~~~~~~l~l~~~~v~~~l~~~~~~~~  371 (429)
                      ++.++..++++.++++.|.+++.+.+||+|++|+++|+++..|+.+.     ...+   ...+.+.++.++|.       
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~v~~im~-------   71 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG---GISRSELTVADVMT-------   71 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc---CCCchheEHHHhcC-------
Confidence            46788999999999999998999999999988999999999999852     1111   01122456788773       


Q ss_pred             cccccCCCce--EE----cCCCCHHHHHHHHHcCCCCEEEEEeCCC-CeEEEEEeHHHHHH
Q 014157          372 PYELRSQRCQ--MC----LPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFK  425 (429)
Q Consensus       372 ~~~~~~~~~~--~v----~~~~~l~~a~~~m~~~~v~~l~VVd~~~-g~l~GiIs~~Dil~  425 (429)
                            .+..  .+    .+++++.++++.|.+++.+++||+| ++ |+++|+||++||++
T Consensus        72 ------~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd-~~~~~~~G~it~~di~~  125 (126)
T cd04640          72 ------PKEDLKALDLEELENASVGDVVETLKASGRQHALVVD-REHHQIRGIISTSDIAR  125 (126)
T ss_pred             ------chhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEE-CCCCEEEEEEeHHHHhh
Confidence                  2232  23    3689999999999999999999999 45 79999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.42  E-value=4.3e-12  Score=103.30  Aligned_cols=110  Identities=24%  Similarity=0.411  Sum_probs=92.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+.......     ...++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~~-------------   62 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE-----ATVLVGDVM-------------   62 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc-----cccCHHHhc-------------
Confidence            5678999999999999999888999999997 999999999999875543211     113455544             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++..++++.++++.|.+++.+++||+| ++|+++|+||..||+++
T Consensus        63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~  111 (111)
T cd04612          63 TRDPVTASPDETLRDALKRMAERDIGRLPVVD-DSGRLVGIVSRSDLLRA  111 (111)
T ss_pred             cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEc-CCCCEEEEEEHHHhhhC
Confidence            55789999999999999999999999999999 47999999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.42  E-value=5.2e-12  Score=102.82  Aligned_cols=109  Identities=23%  Similarity=0.350  Sum_probs=93.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+.+.......     ...++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~-------------   62 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGEVM-------------   62 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHHhc-------------
Confidence            4567899999999999999888999999986 999999999999876643211     245677765             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||.+|+++
T Consensus        63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~di~~  110 (111)
T cd04611          63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVD-DDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CCCceEECCCCCHHHHHHHHHHcCCeEEEEEC-CCCcEEEEEEhHHhhc
Confidence            44788899999999999999999999999999 4799999999999975

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.42  E-value=1.8e-12  Score=108.36  Aligned_cols=120  Identities=19%  Similarity=0.396  Sum_probs=99.6

Q ss_pred             CCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc
Q 014157          199 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI  278 (429)
Q Consensus       199 ~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v  278 (429)
                      ++..+|..+++++.|++++.+|+++|.+++++.+||++    .+   +++|-+|..+|.+.+....           ..+
T Consensus        66 ta~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~----~~---k~VGsItE~~iv~~~le~~-----------e~i  127 (187)
T COG3620          66 TAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE----ED---KVVGSITENDIVRALLEGM-----------ESI  127 (187)
T ss_pred             eHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee----CC---eeeeeecHHHHHHHHhccc-----------cch
Confidence            44568999999999999999999999999999999995    35   7999999999998776432           122


Q ss_pred             ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          279 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       279 ~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      +++       ++.++|..++.++++++++..+-.++..+  .++.|+ ++|+++|+||..|++++...
T Consensus       128 ~~~-------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~~  185 (187)
T COG3620         128 RSL-------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLAG  185 (187)
T ss_pred             hhh-------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence            222       45666999999999999999888888654  578888 58999999999999987653

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=3e-12  Score=106.20  Aligned_cols=119  Identities=21%  Similarity=0.336  Sum_probs=91.8

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++.+++++.+|++.|.+++.+++||++   +++   +++|+++.+|++.+.......      ....++....   
T Consensus         1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~---~~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~~---   65 (120)
T cd04641           1 KNIATARPDTPLIDVLDMLVERRVSALPIVD---ENG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEAL---   65 (120)
T ss_pred             CCcEEEcCCCCHHHHHHHHHHcCCCeeeEEC---CCC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHHH---
Confidence            3678999999999999999999999999996   355   799999999999765322110      0011111100   


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         .....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus        66 ---~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          66 ---ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             ---hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence               011224456789999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.42  E-value=1e-12  Score=130.45  Aligned_cols=120  Identities=23%  Similarity=0.384  Sum_probs=106.6

Q ss_pred             cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH-hcccccccccccccHHHHHhcC
Q 014157          288 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA-KDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       288 ~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~-~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      +++++++..+++++++.+++.+|...|.+.|++++.++++++...||+|++|+.... .++.     -...+|+++|   
T Consensus       149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-----~~~~~V~evm---  220 (610)
T COG2905         149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-----SKTQKVSEVM---  220 (610)
T ss_pred             HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----Ccccchhhhh---
Confidence            456777888999999999999999999999999999999999999999999999644 3332     1256788876   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                                +.+++++..++.+.+|+-+|.++++++|||++  +|+++|+||.+||++.+
T Consensus       221 ----------T~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~  269 (610)
T COG2905         221 ----------TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLF  269 (610)
T ss_pred             ----------ccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhh
Confidence                      67999999999999999999999999999998  79999999999999875

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.42  E-value=3.7e-12  Score=104.13  Aligned_cols=111  Identities=15%  Similarity=0.314  Sum_probs=91.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.++++.|.+++.+.+||+++ |+++|+++..|++........   .....++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~i~-------------   64 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---DPESTLVERVM-------------   64 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC---CcCcCCHHHhc-------------
Confidence            4678899999999999999889999999997 999999999999853322111   11124677765             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+++.+++||++ ++|+++|+||..|++.
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~-~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVD-KSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCCCeEEcCCCCHHHHHHHHHHcCCCcccEEC-CCCCEEEEEEHHHhcc
Confidence            45788899999999999999999999999999 4799999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.5e-12  Score=105.02  Aligned_cols=114  Identities=18%  Similarity=0.385  Sum_probs=92.4

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------cccccccHHHHHhcCCCCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~------l~l~~~~v~~~l~~~~~~~  370 (429)
                      ++..+.+++++.++++.|.+.+.+++||+|+ |+++|+++..++.+.........      ..+...++.+++       
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   73 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIM-------   73 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHc-------
Confidence            4678899999999999999889999999996 99999999999987543211100      011234555554       


Q ss_pred             CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                            ..++.++.+++++.++++.|.+.+.+++||+| + |+++|+||..|++++
T Consensus        74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          74 ------TRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY  121 (121)
T ss_pred             ------cCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence                  45788999999999999999999999999999 4 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.40  E-value=3.7e-12  Score=127.95  Aligned_cols=118  Identities=16%  Similarity=0.281  Sum_probs=101.1

Q ss_pred             ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          289 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       289 ~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      +++++|.+  ++++++.++++.++++.+.+++++++||++++ ++++|+++.+|++......        ..++.+++  
T Consensus       192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~~~--  261 (408)
T TIGR03520       192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQSLL--  261 (408)
T ss_pred             EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHHHc--
Confidence            35566876  68999999999999999999999999999863 6899999999998643321        23456655  


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                  +++.++++++++.++++.|.+++.+..+|+| +.|.++|+||..||++.++|
T Consensus       262 ------------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD-E~G~~~GiVT~eDileeivg  312 (408)
T TIGR03520       262 ------------REPYFVPENKKLDDLLRDFQEKKNHLAIVVD-EYGGTSGLVTLEDIIEEIVG  312 (408)
T ss_pred             ------------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc-CCCCEEEEEEHHHHHHHHhC
Confidence                        3578999999999999999999999999999 58999999999999999875

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.40  E-value=5.8e-12  Score=104.19  Aligned_cols=115  Identities=23%  Similarity=0.377  Sum_probs=92.7

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc------ccccccHHHHHhcCCCCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI------NLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l------~l~~~~v~~~l~~~~~~~  370 (429)
                      ++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..++............      .....++.+++       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   73 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIM-------   73 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhc-------
Confidence            4678899999999999999999999999997 999999999999876543211000      00123445444       


Q ss_pred             CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                            ..++.++.+++++.++++.|.+.+.+++||+| ++|+++|+||..||+++
T Consensus        74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvvt~~di~~~  122 (122)
T cd04585          74 ------TRDPITVSPDASVEEAAELMLERKISGLPVVD-DQGRLVGIITESDLFRA  122 (122)
T ss_pred             ------cCCCeEeCCCCcHHHHHHHHHHcCCCceeEEC-CCCcEEEEEEHHHhhhC
Confidence                  55788999999999999999999999999999 47999999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.40  E-value=3.4e-12  Score=103.73  Aligned_cols=106  Identities=21%  Similarity=0.427  Sum_probs=89.6

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+..++++.++++.|.+.+.+.+||+|++|+++|+++.+++.....         ...++.+++             
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~~~-------------   60 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSEVM-------------   60 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHHhc-------------
Confidence            5678899999999999999899999999998899999999999864311         135677766             


Q ss_pred             CCCceEEcC-CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLP-SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~-~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ...+.++.. ++++.++++.|.+.+.+.+||+| ++|+++|+||.+|+++
T Consensus        61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvi~~~dil~  109 (110)
T cd04601          61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVD-DEGKLKGLITVKDIEK  109 (110)
T ss_pred             ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEc-CCCCEEEEEEhhhhhc
Confidence            334555666 99999999999999999999999 4899999999999985

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.40  E-value=6.3e-12  Score=103.26  Aligned_cols=106  Identities=25%  Similarity=0.367  Sum_probs=88.6

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  373 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~  373 (429)
                      ++.++..++++.++++.|.+.+.+.+||+|+   +|+++|+++..|+......         ..++.++|          
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~----------   63 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS---------ETPLSEVM----------   63 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc---------CCCHHHhc----------
Confidence            4678889999999999999889899999997   7899999999998743211         23577766          


Q ss_pred             cccCCCceEEcC--CCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          374 ELRSQRCQMCLP--SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       374 ~~~~~~~~~v~~--~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                         .....++..  ++++.++++.|.+++.+.+|||| ++|+++|+||..|+++
T Consensus        64 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~-~~~~~~Gvit~~di~~  113 (114)
T cd04602          64 ---TPREVLVVAPTGITLEEANEILRESKKGKLPIVN-DDGELVALVTRSDLKK  113 (114)
T ss_pred             ---CCCceEEECCCCCCHHHHHHHHHhcCCCceeEEC-CCCeEEEEEEHHHhhc
Confidence               334556655  99999999999999999999999 4899999999999975

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=8.3e-12  Score=102.02  Aligned_cols=111  Identities=22%  Similarity=0.400  Sum_probs=91.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH-HHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~-~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ++.++.+++++.+|++.|.+.+.+++||+|+ |+++|+++..|++ +....+.    .....++.++|            
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~----~~~~~~~~~~~------------   64 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR----DPDTTTVGDVM------------   64 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC----CcccCCHHHhc------------
Confidence            4678899999999999999999999999997 9999999999987 3332211    11223477765            


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                       ...+.++.+++++.++++.|...+.+++||+| ++|+++|+||..|++++
T Consensus        65 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~it~~di~~~  113 (113)
T cd04622          65 -TRGVVTVTEDDDVDEAARLMREHQVRRLPVVD-DDGRLVGIVSLGDLARA  113 (113)
T ss_pred             -cCCccEECCCCCHHHHHHHHHHcCCCeeeEEC-CCCcEEEEEEHHHhhcC
Confidence             44688899999999999999999999999999 47999999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.39  E-value=1.7e-11  Score=125.99  Aligned_cols=220  Identities=20%  Similarity=0.293  Sum_probs=147.0

Q ss_pred             eeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCc
Q 014157          140 APLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN  216 (429)
Q Consensus       140 ~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~s  216 (429)
                      +|+..+.    .+.+|..++...+...+..+   .+++.++.... +...+.           .++.|.++++++.++++
T Consensus        42 ~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~-I~~vk~-----------~~dim~~~~v~i~~~~t  105 (486)
T PRK05567         42 IPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEE-VRKVKR-----------SESGVVTDPVTVTPDTT  105 (486)
T ss_pred             cCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHH-HHHhhh-----------hhhcccCCCeEeCCCCC
Confidence            7888642    34568888877775544322   12222221111 111111           13357889999999999


Q ss_pred             HHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC-
Q 014157          217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-  295 (429)
Q Consensus       217 l~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~-  295 (429)
                      +.+|++.|.+++++++||++   +.+   +++|+++.+|+....            ....++.            ++|. 
T Consensus       106 v~ea~~~m~~~~~~~lpVvd---~~g---~lvGiVt~~DL~~~~------------~~~~~V~------------dim~~  155 (486)
T PRK05567        106 LAEALALMARYGISGVPVVD---ENG---KLVGIITNRDVRFET------------DLSQPVS------------EVMTK  155 (486)
T ss_pred             HHHHHHHHHHhCCCEEEEEc---cCC---EEEEEEEHHHhhhcc------------cCCCcHH------------HHcCC
Confidence            99999999999999999996   455   899999999995310            0112233            3365 


Q ss_pred             CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ++++++.+++++.++++.|.+++++.+||+|++|+++|++|.+||++..............+.+..              
T Consensus       156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a--------------  221 (486)
T PRK05567        156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA--------------  221 (486)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe--------------
Confidence            578999999999999999999999999999999999999999999976432100000000111222              


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                          .+...+ ++ .+.++.|.+.+++.+ ++|..+|+..|+++.-+.++.
T Consensus       222 ----ai~~~~-~~-~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        222 ----AVGVGA-DN-EERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             ----ecccCc-ch-HHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence                222223 22 678888999999854 677446888888777666654

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.39  E-value=4.4e-12  Score=103.27  Aligned_cols=103  Identities=17%  Similarity=0.311  Sum_probs=87.6

Q ss_pred             ecCCCCHHHHHHHHHhcC-----CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          301 LRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       301 v~~~~sl~~a~~~m~~~~-----~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+++.+++++..          .+.++.+++            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~~----------~~~~v~~~~------------   59 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLAD----------PDTPVSDIM------------   59 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcCC----------CcchHHHHh------------
Confidence            467889999999998776     47899999889999999999987521          134577765            


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                       ..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..|+++++
T Consensus        60 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          60 -DTDVISVSADDDQEEVARLFEKYDLLALPVVD-EEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             -CCCCeEEcCCCCHHHHHHHHHHcCCceeeeEC-CCCcEEEEEEhHHhhhhC
Confidence             44688999999999999999999999999999 489999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.39  E-value=3.6e-12  Score=134.13  Aligned_cols=122  Identities=19%  Similarity=0.237  Sum_probs=103.4

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      +++++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+.......    ..+.++.++|     
T Consensus       448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~dim-----  518 (574)
T PRK01862        448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAADYA-----  518 (574)
T ss_pred             cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHHhc-----
Confidence            4667788889999999999999999999999999999999999999999999875432211    1134567765     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC--CeEEEEEeHHHHHHHhh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~--g~l~GiIs~~Dil~~l~  428 (429)
                              .+++.++++++++.+++++|.+++.+++||||+ +  ++++|+||++|+++++.
T Consensus       519 --------~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~-~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        519 --------HTPFPLLTPDMPLGDALEHFMAFQGERLPVVES-EASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             --------cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC-CCCCeEEEEEEHHHHHHHHH
Confidence                    557889999999999999999999999999994 4  58999999999999874

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=9e-12  Score=103.82  Aligned_cols=120  Identities=16%  Similarity=0.276  Sum_probs=91.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.+++++.+|++.|.+++++++||+|.  +++   +++|+++..|+++++.................+        
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~--~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~--------   68 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEE--ESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL--------   68 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeC--CCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence            5778999999999999999999999999962  225   799999999999876543211000000000000        


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  341 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~  341 (429)
                        .+.++|..++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+.
T Consensus        69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence              01123566788999999999999999999999999999889999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.7e-11  Score=100.13  Aligned_cols=110  Identities=19%  Similarity=0.383  Sum_probs=91.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.......   .....++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~-------------   64 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNL---KPREVPVGEVM-------------   64 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccC---CcccCCHHHhc-------------
Confidence            4677899999999999999889999999985 499999999999975432211   11235677765             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+.+.+.+||+|+ + +++|+||..|+++
T Consensus        65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~  111 (112)
T cd04802          65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM  111 (112)
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence            447889999999999999999999999999993 4 9999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.38  E-value=1.2e-11  Score=100.28  Aligned_cols=109  Identities=19%  Similarity=0.360  Sum_probs=89.4

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++..++++.++++.|.+++++++||+|+ |+++|+++..|+.+.......    ....++.+++             
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~-------------   63 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA----KFSLPVREVM-------------   63 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc----ccCcCHHHHh-------------
Confidence            4567899999999999999999999999997 999999999999986543211    0134677766             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++++++++.+++++|.+ . ..+|||+ ++|+++|+||++||++|
T Consensus        64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~-~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVD-EGGKFVGIITRADLLKY  110 (110)
T ss_pred             cCCCceeCCCCcHHHHHHHHHh-C-CceeEEe-cCCeEEEEEeHHHhhcC
Confidence            4468889999999999999988 3 3478888 48999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.1e-11  Score=102.91  Aligned_cols=115  Identities=14%  Similarity=0.231  Sum_probs=92.1

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc-----ccccccHHHHHhcCCCCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI-----NLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~-~~l-----~l~~~~v~~~l~~~~~~~  370 (429)
                      ++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..++.+....... ...     .....++.+++       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------   73 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIM-------   73 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhh-------
Confidence            4678899999999999999999999999996 999999999999875432100 000     00012345544       


Q ss_pred             CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                            ..++.++.+++++.++++.|.+++...+||+| ++|+++|++|+.|++++
T Consensus        74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~-~~~~~~Gvit~~dll~~  122 (122)
T cd04637          74 ------TRDPITVSPDTPVDEASKLLLENSISCLPVVD-ENGQLIGIITWKDLLKY  122 (122)
T ss_pred             ------cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEEC-CCCCEEEEEEHHHhhhC
Confidence                  45788999999999999999999999999999 47999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.37  E-value=7.9e-12  Score=102.28  Aligned_cols=109  Identities=14%  Similarity=0.234  Sum_probs=88.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..|+++....   .      ....+         
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~---~------~~~~~---------   57 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVD---EEN---KVLGQVTLSDLLEIGPN---D------YETLK---------   57 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHhhccc---c------ccccC---------
Confidence            356789999999999999999999999996   445   79999999999762110   0      01112         


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         +.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        58 ---v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          58 ---VCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             ---hhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence               23336667889999999999999999999999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.36  E-value=1.5e-11  Score=99.02  Aligned_cols=103  Identities=17%  Similarity=0.335  Sum_probs=89.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+.+++++.++++.|.+++.+.+||+| +++++|+++..++.+...          ..++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~~~-------------   57 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVADAM-------------   57 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHHHc-------------
Confidence            467789999999999999988999999998 699999999999976321          23566665             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+++.+++||+| + |+++|+||..|++.
T Consensus        58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~~l~~  104 (105)
T cd04599          58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR-E-RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE-C-CEEEEEEEHHHhcc
Confidence            44788999999999999999999999999999 4 99999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.36  E-value=1.9e-11  Score=101.17  Aligned_cols=114  Identities=19%  Similarity=0.387  Sum_probs=93.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc-----cccccccHHHHHhcCCCCCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-----INLSEMTIHQALQLGQDSYS  371 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~-----l~l~~~~v~~~l~~~~~~~~  371 (429)
                      ++.++.+++++.+|++.|.+.+.+++||+|++|+++|+++..++.+.........     ......++.++|        
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------   73 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM--------   73 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh--------
Confidence            4678899999999999999889999999998899999999999986543211000     012235567766        


Q ss_pred             cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                           ..++.++..++++.++++.|.+.+...+||+| + |+++|++|..||++
T Consensus        74 -----~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvv~~~di~~  120 (121)
T cd04584          74 -----TKDVITVHPLDTVEEAALLMREHRIGCLPVVE-D-GRLVGIITETDLLR  120 (121)
T ss_pred             -----hCCCeEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHhhc
Confidence                 44788999999999999999999999999999 3 89999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.36  E-value=1.2e-11  Score=99.96  Aligned_cols=105  Identities=15%  Similarity=0.386  Sum_probs=90.2

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++...          ...++.+++             
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----------~~~~~~~~~-------------   58 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----------PDETVEEIM-------------   58 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----------ccccHHHhC-------------
Confidence            5678899999999999998888889999986 9999999999997521          124567765             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.++++.|.+++.+++||++ ++|+++|+|+..||+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~~g~~~Gvi~~~di~~~  107 (107)
T cd04610          59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVD-ENNNLVGIITNTDVIRS  107 (107)
T ss_pred             CCCCeEECCCCCHHHHHHHHHHhCCCeEeEEC-CCCeEEEEEEHHHhhcC
Confidence            44688899999999999999999999999999 48999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.36  E-value=1.4e-11  Score=101.17  Aligned_cols=111  Identities=19%  Similarity=0.254  Sum_probs=90.5

Q ss_pred             ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccc
Q 014157          208 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  287 (429)
Q Consensus       208 ~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~  287 (429)
                      +.++.+++++.+|++.|.+++...+||+|   +++   +++|+++..++++.+......      ....++.        
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd---~~g---~~~G~vt~~dl~~~~~~~~~~------~~~~~v~--------   62 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCD---PHG---KLAGVLTKTDVVRQMGRCGGP------GCTAPVE--------   62 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEehHHHHHHHhhcCCC------cccCCHH--------
Confidence            56789999999999999999999999996   445   799999999998765321000      1112233        


Q ss_pred             cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          288 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       288 ~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                          ++|..++.++.+++++.+|++.|.+++...+||+|++|+++|+++++|++.
T Consensus        63 ----~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          63 ----NVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             ----HHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence                336678899999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.35  E-value=1.7e-11  Score=99.04  Aligned_cols=100  Identities=17%  Similarity=0.265  Sum_probs=86.6

Q ss_pred             eeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCC
Q 014157          299 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQ  378 (429)
Q Consensus       299 ~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~  378 (429)
                      +++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+..           ..++.+++             ..
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~~~-------------~~   58 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVDYI-------------VR   58 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhhhh-------------hc
Confidence            46789999999999999999999999997 9999999999997531           12345544             34


Q ss_pred             CceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          379 RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       379 ~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ++.++.+++++.++++.|.+++.+.+||+|  +|+++|+||..|+++
T Consensus        59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~  103 (104)
T cd04594          59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD  103 (104)
T ss_pred             CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence            678999999999999999999999999998  589999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.34  E-value=1.7e-11  Score=125.60  Aligned_cols=113  Identities=14%  Similarity=0.154  Sum_probs=98.2

Q ss_pred             CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157          294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~  370 (429)
                      |.++++++.+++++.+++++|.+++++.+||+|+   +|+++|+||.+|+....         ..+.++.++|..     
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~eIMt~-----  171 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSEVMTS-----  171 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHHHhcc-----
Confidence            4568899999999999999999999999999987   48999999999996532         124678998832     


Q ss_pred             CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                            ..+++++.+++++.+|++.|.+++.+.+|||| ++++++|+||++||++++
T Consensus       172 ------~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD-~~g~LvGvITr~DIlk~~  221 (505)
T PLN02274        172 ------DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVN-EDGELVDLVTRTDVKRVK  221 (505)
T ss_pred             ------CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHh
Confidence                  12378999999999999999999999999999 489999999999999876

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.34  E-value=8.5e-12  Score=127.52  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=94.5

Q ss_pred             ceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccc
Q 014157          298 LAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE  374 (429)
Q Consensus       298 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~  374 (429)
                      ++++.+++++.+|+++|.+++++.+||+|+   +++++|+||..|+....        ...+.++.++|..         
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--------~~~~~~V~dIMt~---------  169 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--------MSLDTKVKDFMTP---------  169 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--------cCCCCCHHHHhCC---------
Confidence            468999999999999999999999999986   58999999999996421        1225679998832         


Q ss_pred             ccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          375 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       375 ~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                        ..+++++.+++++.+|+++|.++++++||||| ++++++|+||+.||++.
T Consensus       170 --~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD-~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        170 --FEKLVTANEGTTLKEANDIIWDHKLNTLPIVD-KNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             --CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEhHHHHhc
Confidence              23688999999999999999999999999999 48999999999999875

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=4.3e-11  Score=96.73  Aligned_cols=112  Identities=25%  Similarity=0.475  Sum_probs=93.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++..+..++++.++++.|.+.+.+.+||++++++++|+++.+|+...........    ...+.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~~~-------------   64 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP----LVTVGDVM-------------   64 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc----cccHHHHh-------------
Confidence            4567889999999999999988999999998899999999999987665422110    11245544             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+++..|++++
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~~~~G~i~~~dl~~~  113 (113)
T cd02205          65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD-DEGRLVGIVTRSDILRA  113 (113)
T ss_pred             cCCceecCCCcCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHhhcC
Confidence            45788899999999999999999999999999 47999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.33  E-value=1.7e-11  Score=124.69  Aligned_cols=113  Identities=18%  Similarity=0.332  Sum_probs=98.2

Q ss_pred             CCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          293 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       293 ~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      .|.++++++.+++++.++++.|.+++++++||+|++   ++++|+++.+|+.....         ...++.++|..    
T Consensus        85 ~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~dvm~~----  151 (450)
T TIGR01302        85 GIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSEVMTR----  151 (450)
T ss_pred             ceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHHhhCC----
Confidence            355688999999999999999999999999999987   79999999999975321         13578887721    


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                              .+++++++++++.++++.|.+++.+.+|||| ++|+++|+||+.||++.+
T Consensus       152 --------~~~~~V~~~~sl~eal~~m~~~~~~~lpVVD-e~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       152 --------EEVITVPEGIDLEEALKVLHEHRIEKLPVVD-KNGELVGLITMKDIVKRR  200 (450)
T ss_pred             --------CCCEEECCCCcHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEhHHhhhcc
Confidence                    3789999999999999999999999999999 589999999999999864

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.9e-11  Score=101.07  Aligned_cols=111  Identities=23%  Similarity=0.360  Sum_probs=89.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.++++..+||+|   +.+   +++|+++..++++...... .      ....++.       
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~Givt~~dl~~~~~~~~-~------~~~~~~~-------   61 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD---EDG---DLVGVVSRKDLLKASIGGA-D------LQKVPVG-------   61 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHHHHHcCC-C------ccCCCHH-------
Confidence            568899999999999999999999999996   345   7999999999988654211 0      0011122       


Q ss_pred             ccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Di~~  342 (429)
                           ++|..  ++.++.+++++.+++++|.+++++.+||+|++   |+++|+||.+|+++
T Consensus        62 -----~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          62 -----VIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             -----HHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence                 22443  67899999999999999999999999999876   69999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.32  E-value=2.7e-11  Score=100.77  Aligned_cols=122  Identities=20%  Similarity=0.363  Sum_probs=94.4

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++.+++++.++++.|.+++.+++||++   ++|   +++|+++..++++++......  .....++       ...
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~   66 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVD---GDR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD   66 (124)
T ss_pred             CCcEEeCCCCCHHHHHHHHHHcCCceeeEEC---CCC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence            5788999999999999999999999999996   336   799999999998765432110  0000000       001


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      ....++++|.+.+.++.+++++.++++.|.+.+.+.+||+|++|+++|++|..|++.
T Consensus        67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            111244557778999999999999999999999999999998999999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.32  E-value=9.8e-12  Score=116.69  Aligned_cols=116  Identities=16%  Similarity=0.282  Sum_probs=103.0

Q ss_pred             ccCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          289 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       289 ~v~~~~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      .|+++|.  .+...+..++++.+..++..+.+.+++||+|...+++|++|.+|+.....          +.++..+|   
T Consensus       189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~----------~t~ieKVM---  255 (432)
T COG4109         189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP----------STTIEKVM---  255 (432)
T ss_pred             eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC----------CccHHHHh---
Confidence            3556666  56788999999999999999999999999999999999999999975322          46778776   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                +++++++.+.+++..+.++|.-.++..+||+| ++.+++|+||++|+++.+.
T Consensus       256 ----------tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~-~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         256 ----------TKNPITVRAKTSVASVAQMMIWEGIEMLPVVD-SNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             ----------ccCCeeecccchHHHHHHHHHhccceeeeEEc-CCceEEEEEEHHHHHHHHH
Confidence                      66899999999999999999999999999999 5999999999999999874

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.31  E-value=7.3e-11  Score=96.95  Aligned_cols=111  Identities=25%  Similarity=0.454  Sum_probs=94.1

Q ss_pred             CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157          294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  373 (429)
Q Consensus       294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~  373 (429)
                      |.+.++++.++.++.+|...|.++++..+||++. ++++|++|.+|+.+........     ..++.++|          
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~-----~~~v~~v~----------   68 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKR-----LLPVKEVM----------   68 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCc-----cccHHHhc----------
Confidence            3457899999999999999999999999999973 4899999999999877654321     11466665          


Q ss_pred             cccCCCceEEcCCCCHHHHHHHHHc-CCCCEEEEEeCCCC-eEEEEEeHHHHH
Q 014157          374 ELRSQRCQMCLPSDTLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIVSLSDIF  424 (429)
Q Consensus       374 ~~~~~~~~~v~~~~~l~~a~~~m~~-~~v~~l~VVd~~~g-~l~GiIs~~Dil  424 (429)
                         ..++.++.+++++.++++.|.+ .+++++||+++ ++ +++|++|.+|++
T Consensus        69 ---~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~  117 (117)
T COG0517          69 ---TKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL  117 (117)
T ss_pred             ---cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence               4578999999999999999999 79999999994 65 999999999974

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.31  E-value=2.3e-11  Score=125.01  Aligned_cols=116  Identities=22%  Similarity=0.365  Sum_probs=100.5

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++++|.++++++.+++++.++++.|.+++++++||+|++++++|+++.+|+.....         ...++.++|.     
T Consensus        89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~---------~~~~V~dim~-----  154 (486)
T PRK05567         89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD---------LSQPVSEVMT-----  154 (486)
T ss_pred             hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc---------CCCcHHHHcC-----
Confidence            34557778999999999999999999999999999999999999999999964211         1346788762     


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                             ..+++++.+++++.++++.|.+++++.+||+| ++|+++|+||..||++.+
T Consensus       155 -------~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVD-e~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        155 -------KERLVTVPEGTTLEEALELLHEHRIEKLPVVD-DNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             -------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEhHHhhhhh
Confidence                   14789999999999999999999999999999 589999999999999765

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.31  E-value=5e-11  Score=97.82  Aligned_cols=112  Identities=17%  Similarity=0.279  Sum_probs=90.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.+++++.+|++.|.+++.+.+||++.  +.+   +++|+++.+++++.+......      ....++.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~-------   63 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKR--RES---DAYGIVTMRDILKKVVAEGRD------PDRVNVY-------   63 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CCC---cEEEEEehHHHHHHHHhCCCC------CCccCHH-------
Confidence            5678999999999999999999999999961  225   799999999998866432100      0111222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|..++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|+++
T Consensus        64 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          64 -----EIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             -----HHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence                 336667899999999999999999999999999987 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.31  E-value=3.5e-11  Score=97.56  Aligned_cols=100  Identities=23%  Similarity=0.385  Sum_probs=87.1

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  373 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~  373 (429)
                      ....+.+++++.++.+.+.+.+.+.+||+|+   +|+++|+++.+|+.+....               +|          
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------~m----------   57 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------YI----------   57 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------hc----------
Confidence            3567899999999999999988889999998   6899999999999765422               22          


Q ss_pred             cccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          374 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       374 ~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                         ..++.++++++++.++++.|.+++.+.+||++  +|+++|+||+.|++++
T Consensus        58 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          58 ---DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA  105 (105)
T ss_pred             ---cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence               34678899999999999999999999999997  6899999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.31  E-value=2.2e-11  Score=123.65  Aligned_cols=111  Identities=13%  Similarity=0.173  Sum_probs=96.3

Q ss_pred             CCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCC
Q 014157          292 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS  371 (429)
Q Consensus       292 ~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~  371 (429)
                      ++|.++++++.+++++.++++.|.+++++.+||+| +++++|++|.+|+....          ...++.++|        
T Consensus        92 eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~----------~~~~V~dIM--------  152 (475)
T TIGR01303        92 DLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD----------RFTQVRDIM--------  152 (475)
T ss_pred             hccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC----------CCCCHHHHc--------
Confidence            34667889999999999999999999999999998 47999999999984321          124678876        


Q ss_pred             cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                           ..+++++.+++++.+|++.|.+++++.+|||| ++|+++|+||.+||+++.
T Consensus       153 -----t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD-~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       153 -----STDLVTAPADTEPRKAFDLLEHAPRDVAPLVD-ADGTLAGILTRTGALRAT  202 (475)
T ss_pred             -----cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEHHHHHHHH
Confidence                 55899999999999999999999999999999 489999999999999864

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.31  E-value=1.5e-10  Score=117.77  Aligned_cols=205  Identities=14%  Similarity=0.171  Sum_probs=137.0

Q ss_pred             EeeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCC
Q 014157          139 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND  215 (429)
Q Consensus       139 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~  215 (429)
                      .+|+..+-    ..-+|..+....+...+.-+   .+++        +..+.+.....+     ..++|.++++++.+++
T Consensus        44 ~~Pi~sa~----Mdtvt~~~MAiaLAr~GGiGvih~nl~--------~~~q~~~l~~VK-----v~~iMi~~pvtv~~d~  106 (479)
T PRK07807         44 TIPLVVAN----MTAVAGRRMAETVARRGGLVVLPQDIP--------IDVVAEVVAWVK-----SRDLVFDTPVTLSPDD  106 (479)
T ss_pred             ccceeecC----CcchhHHHHHHHHHHCCCceEeeCCCC--------HHHHHHHHhhcc-----cccccccCCeEECCCC
Confidence            37877542    34566777766665443110   2332        222222222221     1345889999999999


Q ss_pred             cHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC
Q 014157          216 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR  295 (429)
Q Consensus       216 sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~  295 (429)
                      ++.+|++.|.+++++.+||+|   +++   +++|++|.+|+...      .       ...++            .++|.
T Consensus       107 tv~eA~~~m~~~~~s~l~VVD---~~g---klvGIVT~rDL~~~------~-------~~~~V------------~diMt  155 (479)
T PRK07807        107 TVGDALALLPKRAHGAVVVVD---EEG---RPVGVVTEADCAGV------D-------RFTQV------------RDVMS  155 (479)
T ss_pred             CHHHHHHHHHhcCCceEEEEC---CCC---eEEEEEeHHHHhcC------c-------cCCCH------------HHhcc
Confidence            999999999999999999996   455   79999999998420      0       01223            34477


Q ss_pred             CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      .+++++.+++++.+|++.|.++++..+||+|++|+++|+||.+||++........ ..-....+..              
T Consensus       156 ~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~~-~~~g~l~V~a--------------  220 (479)
T PRK07807        156 TDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPAV-DAAGRLRVAA--------------  220 (479)
T ss_pred             CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCchh-hhhhccchHh--------------
Confidence            8899999999999999999999999999999889999999999999865442110 0000111221              


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCe
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR  413 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~  413 (429)
                          ..  .......+.++.|.+.+++. .++|..+|.
T Consensus       221 ----av--~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~  251 (479)
T PRK07807        221 ----AV--GINGDVAAKARALLEAGVDV-LVVDTAHGH  251 (479)
T ss_pred             ----hh--ccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence                11  12234667778888888876 466743443

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=5.3e-11  Score=102.16  Aligned_cols=113  Identities=24%  Similarity=0.406  Sum_probs=90.9

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc------cc---------------
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI------NL---------------  354 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~-~~l------~l---------------  354 (429)
                      +++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+++....... ..+      ..               
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK   80 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence            4678999999999999999999999999997 999999999999876543210 000      00               


Q ss_pred             ------ccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          355 ------SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       355 ------~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                            ...++.+             +|..++.++..++++.+++..|.+.+.+++||++ + |+++|+||..|+++
T Consensus        81 ~~~~~~~~~~v~~-------------~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          81 RALTDAGKMKVRD-------------IMTKKVITISPDASIEDAAELMVRHKIKRLPVVE-D-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHhcCCHHH-------------HcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHhhc
Confidence                  1123333             3456789999999999999999999999999999 4 89999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.30  E-value=6.6e-11  Score=96.21  Aligned_cols=108  Identities=22%  Similarity=0.433  Sum_probs=90.2

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++.+++++.+|++.|.+++...+||++   +++   +++|+++..++++.+....           .++.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~-----------~~~~~-----   59 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVD---EDG---RLVGIVTSWDISKAVARDK-----------KSVED-----   59 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEEC---CCC---cEEEEEeHHHHHHHHhhCc-----------cCHHH-----
Confidence            5678899999999999999999999999996   346   7999999999987554210           11222     


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                             +|..++..+.+++++.++++.|.+++...+||++++|+++|+++..|+.+
T Consensus        60 -------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          60 -------IMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             -------hcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence                   25567889999999999999999999999999998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.29  E-value=2.5e-11  Score=115.56  Aligned_cols=112  Identities=17%  Similarity=0.301  Sum_probs=95.8

Q ss_pred             ccCCCCCCC-ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 014157          289 KIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ  367 (429)
Q Consensus       289 ~v~~~~~~~-~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~  367 (429)
                      +++++|.++ +..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+.     ..+.++.++|    
T Consensus       156 ~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~-----~~~~~v~~im----  226 (268)
T TIGR00393       156 KVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG-----SLKSEVRDFM----  226 (268)
T ss_pred             hHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC-----cccCcHHHhC----
Confidence            456668777 899999999999999999999999999998999999999999987644211     1245688876    


Q ss_pred             CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEe
Q 014157          368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS  419 (429)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs  419 (429)
                               ..++.++.+++++.+|++.|.+.+.+++||+| ++|+++|+|+
T Consensus       227 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~l~GvI~  268 (268)
T TIGR00393       227 ---------TLGPKTFKLDALLLEALEFLERRKITSLVVVD-DHNKVLGVLH  268 (268)
T ss_pred             ---------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEEC-CCCeEEEEEC
Confidence                     45788999999999999999999999999999 4789999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=2.9e-11  Score=101.23  Aligned_cols=126  Identities=28%  Similarity=0.385  Sum_probs=92.2

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhh
Q 014157          114 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  193 (429)
Q Consensus       114 ~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  193 (429)
                      ++++++++++|+.+|++.|.++++..+||+|.. ++++|+++..|+............... .     ..........  
T Consensus         1 ~~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~-~-----~~~~~~~~~~--   71 (126)
T cd04642           1 SKVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRT-I-----TFKELSEKFT--   71 (126)
T ss_pred             CCeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccc-h-----hhhhhhhhcc--
Confidence            367899999999999999999999999999975 889999999999876521110000000 0     0000000000  


Q ss_pred             hcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHH
Q 014157          194 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKC  259 (429)
Q Consensus       194 ~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~  259 (429)
                           .....+..+++.+.+++++.+|+++|.+++++++||++   +++   +++|++|..||+++
T Consensus        72 -----~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd---~~~---~~~Giit~~dil~~  126 (126)
T cd04642          72 -----DSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVD---EEG---KPIGVITLTDIISI  126 (126)
T ss_pred             -----cccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEEC---CCC---CEEEEEEHHHHhcC
Confidence                 11123567899999999999999999999999999996   335   79999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.29  E-value=6.7e-11  Score=96.44  Aligned_cols=111  Identities=20%  Similarity=0.386  Sum_probs=90.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.++.++.+|++.|.+++.+++||++   +++   +++|+++..++++.+......      ....+         
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~---------   60 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVD---DGG---RLVGIFSERDIVRKVALRGAS------ALDTP---------   60 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEehHHHHHHHhhcCCC------ccccC---------
Confidence            567889999999999999999999999996   335   799999999999866532110      00112         


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         +.++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus        61 ---~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          61 ---VSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ---HHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence               23336668899999999999999999999999999986 99999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.29  E-value=2.8e-11  Score=123.35  Aligned_cols=116  Identities=13%  Similarity=0.226  Sum_probs=99.3

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  363 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l  363 (429)
                      +++++|.++++++++++++.++++.|.+     +....++|+|++++++|+++.+|++...          .+.+++++|
T Consensus       132 tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----------~~~~v~~im  201 (449)
T TIGR00400       132 SAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----------PEEILSSIM  201 (449)
T ss_pred             hHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----------CCCcHHHHh
Confidence            3556688899999999999999999975     4567899999899999999999987421          134688877


Q ss_pred             hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          364 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                   .+++.++++++++.+|++.|.+++...+|||| ++|+++|+||.+|+++.+.
T Consensus       202 -------------~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD-~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       202 -------------RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVD-NEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             -------------CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEc-CCCeEEEEEEHHHHHHHHH
Confidence                         44688899999999999999999999999999 5899999999999998764

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.28  E-value=7.8e-11  Score=96.44  Aligned_cols=108  Identities=20%  Similarity=0.356  Sum_probs=88.6

Q ss_pred             ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccc
Q 014157          208 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  287 (429)
Q Consensus       208 ~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~  287 (429)
                      .+++.+++++.+|++.|.+++.+.++|++   +++   +++|+++.+++++.+.....        ...++.        
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~--------   61 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVD---ENG---RLLGTVTDGDIRRALLKGLS--------LDDPVS--------   61 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEEC---CCC---CEEEEEEcHHHHHHHhcCCC--------cCCCHH--------
Confidence            46789999999999999999999999996   345   79999999999875542210        111222        


Q ss_pred             cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 014157          288 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  341 (429)
Q Consensus       288 ~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~  341 (429)
                          ++|..++.++.+++++.++++.|.+++.+.+||++++|+++|++|.+|++
T Consensus        62 ----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~  111 (113)
T cd04607          62 ----EVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLL  111 (113)
T ss_pred             ----HhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhc
Confidence                33566788999999999999999999999999999889999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=1e-10  Score=94.50  Aligned_cols=104  Identities=21%  Similarity=0.411  Sum_probs=88.4

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ++.++..++++.++++.|.+.+++.+||++++++++|+++..++.....          +.++.+++             
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~~~-------------   58 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLALLM-------------   58 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHHHh-------------
Confidence            4567888999999999999888999999998899999999999975211          12455554             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++..++++.++++.|.+++.+.+||+|  +|+++|+||..|+++
T Consensus        59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~G~it~~d~~~  105 (106)
T cd04638          59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR  105 (106)
T ss_pred             cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHhhc
Confidence            44788899999999999999999999999999  479999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=9.2e-11  Score=95.68  Aligned_cols=110  Identities=20%  Similarity=0.399  Sum_probs=90.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++..+.+++++.+|++.|.+++.+.+||++   +++   +++|+++..++++.+.....        ...++.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~-------   60 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD---PDE---RPIGIVTERDIVRAVAAGID--------LDTPVS-------   60 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEC---CCC---CEEEEeeHHHHHHHHhccCC--------CccCHH-------
Confidence            567889999999999999999999999996   345   79999999999886654211        111222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|..++..+..++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus        61 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          61 -----EIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             -----HhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence                 336667889999999999999999999999999998899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.28  E-value=8.5e-11  Score=93.70  Aligned_cols=94  Identities=17%  Similarity=0.298  Sum_probs=83.0

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+++++.+||+|   +++   +++|+++.+|+....                          
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~--------------------------   49 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLD---DDG---KLSGIITERDLIAKS--------------------------   49 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHhcCC--------------------------
Confidence            567899999999999999999999999996   445   799999999997410                          


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                                .+.++.+++++.++++.|.+++.+.+||++++|+++|++|.+|+++
T Consensus        50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                      1568899999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.27  E-value=8.2e-11  Score=97.10  Aligned_cols=113  Identities=15%  Similarity=0.241  Sum_probs=89.1

Q ss_pred             CceeecCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~-~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..|+.+......... .....++.++|            
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~-~~~~~~v~~~~------------   67 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRA-LYGKKPVSEVM------------   67 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHH-HHcCCcHHHhc------------
Confidence            4567889999999999998776 889999998 99999999999986543210000 01234567665            


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCC---EEEEEeCCCCeEEEEEeHHHHHH
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVR---RLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~---~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                       ..++.++.+++++.++++.|.+.+..   ..+||+ ++|+++|+||..|+++
T Consensus        68 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~-~~~~~~Gvvs~~di~~  118 (119)
T cd04598          68 -DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVT-EEGRYLGIGTVKDLLR  118 (119)
T ss_pred             -CCCcEEecCCCCHHHHHHHHHcCCcccccccEEEe-eCCeEEEEEEHHHHhc
Confidence             45788999999999999999998864   346888 4899999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.27  E-value=9e-11  Score=95.57  Aligned_cols=109  Identities=23%  Similarity=0.423  Sum_probs=90.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.+++++.+|++.|.+.+...+||++   +++   +++|+++..++.+++....         ...++.+      
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~---------~~~~v~~------   60 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVD---GDG---HLVGLLTRDDLIRALAEGG---------PDAPVRG------   60 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEEC---CCC---cEEEEeeHHHHHHHHHhcC---------CCCcHHH------
Confidence            567889999999999999988899999996   345   7999999999988665321         0112222      


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                            +|..++..+.+++++.++++.|.+++...+||++++|+++|++|.+|+..
T Consensus        61 ------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          61 ------VMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             ------HhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence                  35567889999999999999999999999999998799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.26  E-value=5e-11  Score=122.07  Aligned_cols=113  Identities=22%  Similarity=0.224  Sum_probs=96.9

Q ss_pred             CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157          294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~  370 (429)
                      +..+++++.+++++.+++++|.+++++.+||+|++   ++++|+++.+|+.... .        .+.++.++|..     
T Consensus       102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~--------~~~~V~diMt~-----  167 (495)
T PTZ00314        102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-D--------KSTPVSEVMTP-----  167 (495)
T ss_pred             cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-c--------CCCCHHHhhCC-----
Confidence            55678999999999999999999999999999873   8999999999997321 1        14678888732     


Q ss_pred             CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                            ..++.++.+++++.+|+++|.+++.+.+|||| ++++++|+||++||++..
T Consensus       168 ------~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd-~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        168 ------REKLVVGNTPISLEEANEVLRESRKGKLPIVN-DNGELVALVSRSDLKKNR  217 (495)
T ss_pred             ------cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEc-CCCcEEEEEEehHhhhcc
Confidence                  12688999999999999999999999999999 589999999999999763

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.26  E-value=4.7e-11  Score=116.81  Aligned_cols=117  Identities=15%  Similarity=0.190  Sum_probs=97.6

Q ss_pred             CccCCCC--ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc
Q 014157          201 GKAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI  278 (429)
Q Consensus       201 g~~~~~~--~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v  278 (429)
                      +++|.++  ++++++++++.+|++.|.+++...+||+|   ++|   +++|+++..|+.+.+....        ....+ 
T Consensus       200 ~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd---~~g---~~iG~vt~~dl~~~~~~~~--------~~~~~-  264 (321)
T PRK11543        200 HHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCD---AQQ---QVQGVFTDGDLRRWLVGGG--------ALTTP-  264 (321)
T ss_pred             HHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEecHHHHHHHHhCCC--------CcCCc-
Confidence            4467777  99999999999999999998899999996   456   7999999999987553210        01122 


Q ss_pred             ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          279 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       279 ~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                                 +.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+||++|++++
T Consensus       265 -----------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        265 -----------VNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             -----------HHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence                       334477889999999999999999999999999999988999999999999864

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.26  E-value=3.1e-10  Score=115.37  Aligned_cols=159  Identities=16%  Similarity=0.185  Sum_probs=115.5

Q ss_pred             EeeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCC
Q 014157          139 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND  215 (429)
Q Consensus       139 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~  215 (429)
                      .+|+..+.    .--+|.......+...+.-+   .++        ++..|.+.....+     ..+.|.++++++.+++
T Consensus        43 ~~P~vsa~----mdtvTe~~MAi~~A~~GGigvIh~n~--------~i~~qae~v~~VK-----v~eim~~~pvtv~p~~  105 (475)
T TIGR01303        43 TIPLVVAN----MTAVAGRRMAETVARRGGIVILPQDL--------PIPAVKQTVAFVK-----SRDLVLDTPITLAPHD  105 (475)
T ss_pred             ccceeecc----chhhHHHHHHHHHHHCCCEEEEeCCC--------CHHHHHHHHhhcc-----hhhccccCCeEECCCC
Confidence            46777542    33456666665555443211   222        3444444333321     1235778899999999


Q ss_pred             cHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC
Q 014157          216 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR  295 (429)
Q Consensus       216 sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~  295 (429)
                      ++.+|+++|.+++++.+||+|    ++   +++|++|.+|+...      .       ...+            +.++|.
T Consensus       106 tI~eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~------~-------~~~~------------V~dIMt  153 (475)
T TIGR01303       106 TVSDAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV------D-------RFTQ------------VRDIMS  153 (475)
T ss_pred             CHHHHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC------C-------CCCC------------HHHHcc
Confidence            999999999999999999985    24   79999999998310      0       0122            334477


Q ss_pred             CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      .+++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++....
T Consensus       154 ~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       154 TDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY  204 (475)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence            889999999999999999999999999999989999999999999986543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.26  E-value=1.3e-10  Score=93.75  Aligned_cols=104  Identities=14%  Similarity=0.193  Sum_probs=86.8

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.++.++.+|++.|.+++.+.+||++   ++|   +++|+++..++++...              .++.       
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d---~~g---~~~Giv~~~dl~~~~~--------------~~~~-------   54 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVD---ADG---QPLGFVTRREAARASG--------------GCCG-------   54 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEeHHHHHHhcc--------------cchh-------
Confidence            467889999999999999999999999995   446   7999999999985311              1122       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+++.+++++
T Consensus        55 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          55 -----DHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             -----hhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                 225556778999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.25  E-value=9.1e-11  Score=96.29  Aligned_cols=114  Identities=18%  Similarity=0.322  Sum_probs=88.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      .++++.+++++.+|++.|.+++++.+||+|   +++   +++|+++.+++++++........  ..+...+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~---------   64 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLD---KEG---KYVGTISLTDILWKLKGLENLDL--ERLVDLK---------   64 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeEC---CCC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCc---------
Confidence            467899999999999999999999999996   445   79999999999987753221100  0000112         


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         +.++|.+++.++.+++++.+|++.|.+.+  .+||+|++|+++|++|.+|+++
T Consensus        65 ---v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          65 ---VIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             ---HHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence               33346678899999999999999998754  5999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.25  E-value=3.5e-11  Score=100.69  Aligned_cols=113  Identities=12%  Similarity=0.193  Sum_probs=90.3

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++.+++++.+|++.|.+++++.+||++   +++   +++|+++..++++.+.....       ....+        
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd---~~~---~~~Gii~~~dl~~~~~~~~~-------~~~~~--------   60 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD---ESG---KILGMVTLGNLLSSLSSGKV-------QPSDP--------   60 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHHHHHHhcc-------CCCCc--------
Confidence            3678899999999999999999999999996   345   79999999999876543211       01223        


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHH---------hcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLV---------QAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~---------~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                          ++++|.+++.++.+++++.++.+++.         +.+...+||++++|+++|+||.+|++++
T Consensus        61 ----v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          61 ----VSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             ----HHHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence                34448889999999999999999642         3367888999988999999999999864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.25  E-value=5.6e-11  Score=118.99  Aligned_cols=161  Identities=16%  Similarity=0.249  Sum_probs=128.4

Q ss_pred             EeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhc----
Q 014157          152 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN----  227 (429)
Q Consensus       152 Gilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~----  227 (429)
                      .=++..|.+.++..+.   .+...+.|....-......+...+|+++++|+.|+..++++.++.|+.+|+..+.+.    
T Consensus        89 e~m~~Dd~~~ll~elp---~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~  165 (451)
T COG2239          89 EELDIDDAADLLDELP---DEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDA  165 (451)
T ss_pred             HhcCcHHHHHHHHhCC---HHHHHHHHHhCCHHHHHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccc
Confidence            3355556666664432   333445666666666667777889999999999999999999999999999999854    


Q ss_pred             -CCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCC
Q 014157          228 -EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS  306 (429)
Q Consensus       228 -~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~s  306 (429)
                       .+..+.|+|   .++   +++|+++.++++.             .....+++++            |.+.++.+.+++.
T Consensus       166 e~~~~lyVvD---~~~---~L~Gvvsl~~Ll~-------------a~~~~~i~~i------------m~~~~~~V~~~~d  214 (451)
T COG2239         166 ETIYYLYVVD---EKG---KLLGVVSLRDLLT-------------AEPDELLKDL------------MEDDVVSVLADDD  214 (451)
T ss_pred             cccceEEEEC---Ccc---ceEEEeeHHHHhc-------------CCcHhHHHHH------------hcccceeecccCC
Confidence             468889996   455   7999999999973             1112333444            7788999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          307 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       307 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      .+++.+.+.+++.-++||||++++++|++|..|++..+..
T Consensus       215 qeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~e  254 (451)
T COG2239         215 QEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEE  254 (451)
T ss_pred             HHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHH
Confidence            9999999999999999999999999999999999987754

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.24  E-value=1.7e-10  Score=94.75  Aligned_cols=111  Identities=18%  Similarity=0.357  Sum_probs=89.8

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++..+.+++++.+|++.|.+.+.+.+||+|   +++   +++|+++..++++.+.....       ....+         
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~---------   59 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVD---RDG---GVVGIITLPDLLRALEADEA-------GEPSA---------   59 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEc---CCC---CEEEEEEHHHHHHHHhcccc-------ccccc---------
Confidence            456788999999999999999999999996   345   79999999999876543110       00111         


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~--g~lvGivt~~Di~~  342 (429)
                         +.++|..++..+.+++++.++++.|.+++...+||+|++  |+++|+||.+|+++
T Consensus        60 ---~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          60 ---VDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             ---HHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence               223356678999999999999999999999999999876  79999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.1e-10  Score=97.12  Aligned_cols=123  Identities=20%  Similarity=0.329  Sum_probs=92.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.++.++.+|+++|.+.+...+||++.  +++   +++|+++..++++++............. .   ..    ..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~--~~~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~-~---~~----~~   68 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDE--GTG---KLVGIITATDILKYLGGGEKFNKIKTGN-G---LE----AI   68 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeC--CCC---EEEEEEEHHHHHHHhhccchhccccccc-c---ch----hh
Confidence            5678899999999999999999999999962  236   8999999999998765321110000000 0   00    00


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      ...+.+++.+++..+.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus        69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            11233446667999999999999999999999999999998799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1.4e-10  Score=96.11  Aligned_cols=120  Identities=21%  Similarity=0.425  Sum_probs=92.4

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+.+++.+||++   +++   +++|+++..++++++........  .... ......     
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~~~--~~~~-~~~~~~-----   67 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVN---EDG---KLVGLLTQRDLLRAALSSLSDNG--EESL-TKERDV-----   67 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEEC---CCC---CEEEEEEHHHHHHHhcccccccc--cccc-ccccCc-----
Confidence            567899999999999999999999999996   345   79999999999987653321100  0000 000111     


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                        .+.+++..++..+.+++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus        68 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          68 --PVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             --CHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence              233346668889999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.24  E-value=2.1e-10  Score=93.22  Aligned_cols=108  Identities=23%  Similarity=0.407  Sum_probs=89.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+++++.+||++   + +   +++|+++..++++.......         ..++.+      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~------   59 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LAKVKD------   59 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------ccCHHH------
Confidence            577899999999999999999999999995   3 6   79999999999876432110         012222      


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                            +|..++..+.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus        60 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          60 ------VMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             ------HhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence                  25567899999999999999999999999999998899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.24  E-value=1.1e-10  Score=95.79  Aligned_cols=109  Identities=14%  Similarity=0.276  Sum_probs=86.4

Q ss_pred             CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          207 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~-i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++.++.+++++.+|++.|.+++ .+.+||+|   +++   +++|+++..|+++......         ...++.++    
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~~----   62 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVD---NEG---RYVGIISLADLRAIPTSQW---------AQTTVIQV----   62 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEc---CCC---cEEEEEEHHHHHHHHHhhc---------cccchhhh----
Confidence            5678899999999999997775 88999996   345   7999999999987553211         01122222    


Q ss_pred             cccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                              |.+  ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus        63 --------~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          63 --------MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             --------hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence                    332  3568899999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.24  E-value=1e-10  Score=95.73  Aligned_cols=112  Identities=21%  Similarity=0.336  Sum_probs=89.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.+++++.+|++.|.+++.+.+||++   +++   +++|+++..++++.+.......     ....+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~---------   61 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVD---DNG---NLVGFLSEQDCLKQLLESSYHC-----DGVAT---------   61 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEEC---CCC---eEEEEeehHHHHHHhhhhhhcc-----CCCcc---------
Confidence            567889999999999999998999999996   445   7999999999998665321000     00112         


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         +.++|..++..+.+++++.++++.|.+++.+.+||+|+ |+++|++|.+|+++
T Consensus        62 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          62 ---VRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             ---HHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence               22335667889999999999999999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.23  E-value=7.6e-11  Score=115.57  Aligned_cols=118  Identities=15%  Similarity=0.178  Sum_probs=95.8

Q ss_pred             CCccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc
Q 014157          200 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP  277 (429)
Q Consensus       200 ~g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~  277 (429)
                      ++++|.+  +++++.+++++.+|++.|.+++...+||++   ++|   +++|++|..|+.+.+....       .+... 
T Consensus       204 V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd---~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~-  269 (326)
T PRK10892        204 VSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD---DNM---KIEGIFTDGDLRRVFDMGI-------DLRQA-  269 (326)
T ss_pred             HHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc---CCC---cEEEEEecHHHHHHHhcCC-------CcccC-
Confidence            3456776  899999999999999999998888878885   456   7999999999986433110       01112 


Q ss_pred             cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          278 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       278 v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                                 .++++|.+++.++.+++++.+|++.|.+++++.+||++ +|+++|+||++|+++.
T Consensus       270 -----------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        270 -----------SIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             -----------CHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence                       24455888899999999999999999999999999997 6899999999999864

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.23  E-value=2e-10  Score=93.79  Aligned_cols=111  Identities=15%  Similarity=0.247  Sum_probs=89.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++..+.+++++.+|++.|.+.+.+.+||++   +++   +++|+++..++.+......       .+...++.       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd---~~~---~~~G~v~~~dl~~~~~~~~-------~~~~~~i~-------   61 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVD---DKK---RLVGIITRYDVLSYALESE-------ELKDAKVR-------   61 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEc---CCC---CEEEEEEHHHHHHhhhhhh-------hhcCCcHH-------
Confidence            356789999999999999999999999996   345   7999999999987543210       00112222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|..++.++..++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        62 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          62 -----EVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             -----HhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence                 235567889999999999999999999999999998899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.23  E-value=1.4e-10  Score=118.96  Aligned_cols=118  Identities=14%  Similarity=0.237  Sum_probs=97.1

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      +++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+++.......    ..+.++.++|     
T Consensus       336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~im-----  406 (454)
T TIGR01137       336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA----NPDDAVSKVM-----  406 (454)
T ss_pred             CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC----CcCCCHHHhc-----
Confidence            4567788899999999999999999999999999999988999999999999875543211    1134678776     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                              ..++.++++++++.++++.|.+++   .+||+ ++|+++|+||++||+++|
T Consensus       407 --------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~-~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       407 --------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVT-EEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             --------CCCCeEECCcCcHHHHHHHHHHCC---eeEEE-ECCEEEEEEEHHHHHHhh
Confidence                    457889999999999999998864   34555 279999999999999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.23  E-value=2e-10  Score=94.87  Aligned_cols=120  Identities=20%  Similarity=0.310  Sum_probs=92.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.++.++.+|++.|.+++...+||++   + +   +++|+++..+++++.........         ..+...+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~   65 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVD---R-G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEec---C-C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence            567889999999999999999999999996   2 6   79999999999987643221100         000000000


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      ...+.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            11234456778899999999999999999999999999998899999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.23  E-value=2.5e-10  Score=92.51  Aligned_cols=106  Identities=21%  Similarity=0.361  Sum_probs=88.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++..+.+++++.+|+..|.+++...+||++   +++   +++|+++..++++....            ..++.       
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~------------~~~v~-------   57 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVD---KDN---KLLGIVSLESLEQAYKE------------AKSLE-------   57 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEc---CCC---cEEEEEEHHHHHHHhhc------------CCcHh-------
Confidence            567789999999999999999999999996   345   79999999999864321            01222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|...+..+.+++++.++++.|.+.+.+.+||++++|+++|++|.+|+++
T Consensus        58 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          58 -----DIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             -----HhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence                 225567889999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.23  E-value=2e-10  Score=93.57  Aligned_cols=109  Identities=22%  Similarity=0.396  Sum_probs=88.8

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.+++++.++.+|++.|.+++.+++||++   + +   +++|+++..++++.+.... .      ....++.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~-~------~~~~~i~-------   60 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD---D-G---RLVGIVTDRDLRNRVVAEG-L------DPDTPVS-------   60 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHhccC-C------CccCCHH-------
Confidence            567889999999999999999999999996   3 5   7999999999987543210 0      0111222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|..++..+.+++++.++++.|.+.+.+++||+++ |+++|++|.+|+++
T Consensus        61 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          61 -----EVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             -----HHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence                 335668889999999999999999999999999986 99999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.23  E-value=9e-11  Score=99.46  Aligned_cols=130  Identities=20%  Similarity=0.343  Sum_probs=92.7

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc--c-
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI--P-  282 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l--~-  282 (429)
                      +++.++.+++++.+|++.|.+++.+++||++   +.+   +++|+++..+++++....+.........+.......  . 
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04586           2 TDVVTVSPETSVAEAARLMLDNHISGLPVVD---DDG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF   75 (135)
T ss_pred             CCCEEeCCCCCHHHHHHHHHHcCCCCceEEC---CCC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence            5678899999999999999999999999996   445   799999999998765432110000000000000000  0 


Q ss_pred             CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          283 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       283 i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      .......+.++|..++..+.+++++.++++.|.+.+.+.+||+| +|+++|++|.+|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          76 VRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             HHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            00001123444667889999999999999999999999999999 899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=1.7e-10  Score=93.99  Aligned_cols=108  Identities=14%  Similarity=0.289  Sum_probs=88.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++..+++++++.+|++.|.+++.+.+||++   +.+   +++|+++..+++.+.....        ....++.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~-------   60 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKD---NEE---KLKGVVTFTDILDLDLFES--------FLEKKVF-------   60 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEc---CCC---CEEEEEehHHhHHHHhhcc--------cccCcHH-------
Confidence            567889999999999999999999999996   345   7999999999986543210        0112222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  341 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~  341 (429)
                           ++|.+++..+.+++++.++++.|.+++...+||+++ |+++|++|..|++
T Consensus        61 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~  109 (111)
T cd04626          61 -----NIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDIL  109 (111)
T ss_pred             -----HHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhc
Confidence                 236667889999999999999999999999999987 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.22  E-value=2.6e-10  Score=92.75  Aligned_cols=108  Identities=19%  Similarity=0.382  Sum_probs=89.5

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      +++++++++.++.+|++.|.+++...+||++   + +   +++|+++..++.+.+....         ...++.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~~~-----   60 (110)
T cd04595           2 SPVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPVKD-----   60 (110)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcHHH-----
Confidence            4678899999999999999988999999996   3 5   7999999999987553211         1122333     


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                             +|.+++..+.+++++.+++++|.+.+.+.+||++ +|+++|++|..|+++
T Consensus        61 -------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          61 -------YMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             -------HhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence                   3666788999999999999999999999999998 889999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.22  E-value=2.4e-10  Score=93.80  Aligned_cols=110  Identities=22%  Similarity=0.347  Sum_probs=85.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          207 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~-i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++.++.++.++.+|++.|.+++ ...++|.+    .+   +++|+++..|+++++.....       ....++.+     
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~-----   62 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE----KG---RLLGIFTERDIVRLTAIGKD-------LSDLPIGE-----   62 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC----CC---cEEEEEeHHHHHHHHhcCCC-------ccccCHHH-----
Confidence            4567899999999999998888 56667763    35   79999999999876543110       01122222     


Q ss_pred             cccccCCCCCCCceeecCC--CCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPS--ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~--~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                             +|..++.++.++  +++.++++.|.+++...+||+|++|+++|++|++|+++
T Consensus        63 -------~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          63 -------VMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             -------hcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence                   355677788876  68999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.22  E-value=2e-10  Score=93.24  Aligned_cols=105  Identities=18%  Similarity=0.310  Sum_probs=88.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.+++++.+|+..|.+++.+.+||++   +++   +++|+++..+++...             ...++.++     
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~-------------~~~~v~~~-----   58 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD---EKN---KVVGIVTSKDVAGKD-------------PDTTIEKV-----   58 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEEC---CCC---eEEEEecHHHHhccc-------------ccccHHHH-----
Confidence            578899999999999999999989999996   456   799999999996410             01223332     


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                             |..++.++.+++++.++++.|.+++...+||++++|+++|++|..|+++
T Consensus        59 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          59 -------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             -------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence                   5567889999999999999999999999999998999999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.21  E-value=3.5e-10  Score=91.91  Aligned_cols=109  Identities=22%  Similarity=0.423  Sum_probs=89.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.+++++.+|++.|.+++.+.+||++   + +   +++|+++.+++.++......        ...++        
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~~l~~~~~~~~~--------~~~~v--------   58 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVD---D-G---RPLGIVTERDILRLLASGPD--------LQTPV--------   58 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEeHHHHHHHHhcCCC--------CCcCH--------
Confidence            467789999999999999998899999996   2 6   89999999999876643210        11122        


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                          +++|.+++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+|+++
T Consensus        59 ----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          59 ----GEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             ----HHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence                2335667889999999999999999999999999998899999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.21  E-value=3.1e-10  Score=92.73  Aligned_cols=111  Identities=22%  Similarity=0.412  Sum_probs=90.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.+++++.++++.|.+.+.+++||++   +++   +++|+++..++.+.+......       -..+         
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~---------   60 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVD---EDG---RLVGIFTDGDLRRALEKGLDI-------LTLP---------   60 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEc---CCC---CEEEEechHHHHHHHhccCcc-------ccCC---------
Confidence            456789999999999999888889999996   345   799999999999876543211       0112         


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         ++++|.+++..+.+++++.++++.|.+++...+||++++|+++|+++..||++
T Consensus        61 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          61 ---VADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             ---HHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence               22336667889999999999999999999999999998899999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.21  E-value=2.7e-10  Score=92.78  Aligned_cols=109  Identities=15%  Similarity=0.250  Sum_probs=88.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+++...+||++.  +++   +++|+++..+++++......         ..++..+     
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~--~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~-----   62 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDG--DLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDL-----   62 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECC--CCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHH-----
Confidence            4678999999999999999999999999962  225   79999999999987643210         0112221     


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                             + .++..+.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        63 -------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          63 -------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             -------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence                   3 35788999999999999999999999999998899999999999863

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.21  E-value=2.3e-10  Score=96.55  Aligned_cols=128  Identities=16%  Similarity=0.311  Sum_probs=91.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc--ccccCc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI--CAIPVG  284 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v--~~l~i~  284 (429)
                      +++++.+++++.+|++.|.+++.+.+||+|   +++   +++|+++..++++++......... ........  .+....
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d---~~~---~~~G~i~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   74 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVD---NEG---RVVGIVSEGDLIRKIYKGKGLFYV-TLLYSVIFLDESKIKK   74 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceEC---CCC---CEEEEEeHHHHHHHHhccCCcccc-cccccccccchHHHHH
Confidence            567899999999999999999999999996   345   799999999999877542211000 00000000  000000


Q ss_pred             ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          285 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       285 ~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      .....+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        75 ~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          75 LLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            0001234456678899999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=2e-10  Score=95.00  Aligned_cols=119  Identities=24%  Similarity=0.500  Sum_probs=91.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+++.+.+||++   + +   +++|+++..++.+++.........  ...........    
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~----   68 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRNLP----   68 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhccC----
Confidence            577899999999999999999999999996   3 6   899999999999876532211100  00011111222    


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         +.++|..++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus        69 ---~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          69 ---VSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             ---HHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence               22335667899999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.20  E-value=3e-10  Score=96.51  Aligned_cols=129  Identities=15%  Similarity=0.216  Sum_probs=92.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccC-CCCCccc---CCcccccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC-SSSLPIL---KLPICAIP  282 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~-~~~~~~l---~~~v~~l~  282 (429)
                      ++.++.+++++.+|++.|.+++...+||+|   +++   +++|+++..++++++....... ......+   ........
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVD---DNG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY   75 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEEC---CCC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence            467789999999999999999999999996   445   7999999999998664221100 0000000   00000000


Q ss_pred             CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          283 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       283 i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      .......+.++|.+++..+.+++++.++++.|.+.+.+.+||+++ |+++|++|.+|+++
T Consensus        76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            001112345567778899999999999999999999999999986 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.20  E-value=4.2e-10  Score=91.47  Aligned_cols=109  Identities=21%  Similarity=0.365  Sum_probs=89.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++.+.+++++.+|++.|.+.+.+.+||++   + +   +++|+++..++++........        ..+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~--------~~~---------   57 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD---D-G---RLVGIVTLADIRRVPAEGREA--------TVL---------   57 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEee---C-C---eEEEEEEHHHHHHHHhcCccc--------ccC---------
Confidence            577899999999999999998999999996   3 5   799999999998755321100        001         


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         +.+.|.+++..+..++++.++++.|.+++.+.+||+|++|+++|++|..|+++
T Consensus        58 ---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          58 ---VGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             ---HHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence               22335668899999999999999999999999999998899999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.20  E-value=3.5e-10  Score=92.88  Aligned_cols=110  Identities=26%  Similarity=0.501  Sum_probs=93.4

Q ss_pred             CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccC
Q 014157          204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  283 (429)
Q Consensus       204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  283 (429)
                      +.+.++++.++.++.+|+..|.++++..+||++    ..   +++|++|.+|+++.+........               
T Consensus         5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~----~~---~l~Giit~~di~~~~~~~~~~~~---------------   62 (117)
T COG0517           5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD----DG---KLVGIITERDILRALAAGGKRLL---------------   62 (117)
T ss_pred             ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHhccCCccc---------------
Confidence            457899999999999999999999999999995    22   59999999999998765432210               


Q ss_pred             cccccccCCCCCCCceeecCCCCHHHHHHHHHh-cCCCEEEEECCCC-cEEEEEeHHHH
Q 014157          284 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ-AQVSSIPIVDDND-SLLDIYCRSDI  340 (429)
Q Consensus       284 ~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~-~~~~~lpVvd~~g-~lvGivt~~Di  340 (429)
                           .+.++|..++.++.++.++.++.+.|.+ ++++++||+++++ +++|++|..|+
T Consensus        63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence                 2333466688999999999999999999 7999999999886 99999999997

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.19  E-value=5.9e-10  Score=112.05  Aligned_cols=160  Identities=17%  Similarity=0.225  Sum_probs=121.9

Q ss_pred             hhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhh
Q 014157          102 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH  181 (429)
Q Consensus       102 ~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~  181 (429)
                      ++.++.|+|-+-.++++++.+.|+.++++.+.+++.+.+||++.+..+++|+++..|++..+.   .  ..        .
T Consensus       189 ~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~---~--~~--------~  255 (408)
T TIGR03520       189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN---K--KN--------F  255 (408)
T ss_pred             CCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhc---c--CC--------C
Confidence            578899999888899999999999999999999999999999987789999999999975431   0  00        0


Q ss_pred             hHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH
Q 014157          182 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  261 (429)
Q Consensus       182 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~  261 (429)
                      .+..                 ++ +++..++++.++.++++.|.+++.+.++|+|   +.|   ..+|++|..||++.+.
T Consensus       256 ~l~~-----------------~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD---E~G---~~~GiVT~eDileeiv  311 (408)
T TIGR03520       256 DWQS-----------------LL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVD---EYG---GTSGLVTLEDIIEEIV  311 (408)
T ss_pred             CHHH-----------------Hc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEc---CCC---CEEEEEEHHHHHHHHh
Confidence            1111                 12 4678999999999999999999999999996   555   6999999999999887


Q ss_pred             hhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHH
Q 014157          262 RYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL  314 (429)
Q Consensus       262 ~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m  314 (429)
                      ........   .-...+..+             ......++...++.++.+.+
T Consensus       312 gei~de~d---~~~~~i~~~-------------~~~~~~v~G~~~l~~l~~~l  348 (408)
T TIGR03520       312 GDISDEFD---DEDLIYSKI-------------DDNNYVFEGKTSLKDFYKIL  348 (408)
T ss_pred             CCCCCcCC---cCccceEEe-------------CCCeEEEEeccCHHHHHHHh
Confidence            54332110   001111122             12345677888898888877

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.19  E-value=3e-10  Score=92.69  Aligned_cols=111  Identities=25%  Similarity=0.374  Sum_probs=90.4

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.+++++.+|++.|.+++...+||++   +++   +++|+++..++.+++......       -..+         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~~-------~~~~---------   59 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVD---DDG---RLVGIVSLDDIREILFDPSLY-------DLVV---------   59 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEEC---CCC---CEEEEEEHHHHHHHHhccccc-------ccEE---------
Confidence            567899999999999999999999999996   335   799999999998765321100       0012         


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~  342 (429)
                         +.++|.+++.++.+++++.++++.|.+.+.+.+||+++ .++++|+++..|++.
T Consensus        60 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          60 ---ASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             ---HHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence               33346678899999999999999999999999999987 799999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.19  E-value=4.5e-10  Score=91.67  Aligned_cols=111  Identities=15%  Similarity=0.187  Sum_probs=89.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+++.+.+||++   + +   +++|+++..+++..+......      ....++.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~-------   61 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGLD------PESTLVE-------   61 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCCC------cCcCCHH-------
Confidence            467789999999999999999999999996   3 6   799999999998644321100      0012232       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|.+++.++.+++++.++++.|.+++...+||++++|+++|+++.+|++.
T Consensus        62 -----~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          62 -----RVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             -----HhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence                 336667889999999999999999999999999998899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.19  E-value=4.5e-10  Score=91.64  Aligned_cols=110  Identities=22%  Similarity=0.384  Sum_probs=88.3

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHH-HHHhhcccCCCCCcccCCccccccCcc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~-~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      +++++.+++++.+|.+.|.+++.+.+||++   + +   +++|+++..+++. .+....       .....+        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~~~-------~~~~~~--------   59 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAEGR-------DPDTTT--------   59 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhccC-------CcccCC--------
Confidence            567899999999999999999999999996   3 6   8999999999873 222110       000111        


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                          +.++|...+.++.+++++.++++.|.+.+.+++||++++|+++|+++..|+++
T Consensus        60 ----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          60 ----VGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             ----HHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence                23336667889999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11573 hypothetical protein; Provisional

Probab=99.18  E-value=5.3e-10  Score=112.40  Aligned_cols=121  Identities=14%  Similarity=0.225  Sum_probs=99.1

Q ss_pred             cCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.+  .+++++.++++.++++.+.+++++++||.++ .+.++|++..+|++.....+.       ......+... 
T Consensus       189 v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~~-  260 (413)
T PRK11573        189 VDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLRA-  260 (413)
T ss_pred             hhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHhh-
Confidence            5555654  6899999999999999999999999999975 478999999999987543211       1122322211 


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                .+++.+|+++.++.++++.|.+++.+-..|+| |.|...|+||..||+..++|
T Consensus       261 ----------~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD-EyG~~~GiVTleDilEeivG  312 (413)
T PRK11573        261 ----------ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  312 (413)
T ss_pred             ----------ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-cCCCeEEEeeHHHHHHHHhC
Confidence                      24788999999999999999999999999999 69999999999999999886

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.17  E-value=1.1e-09  Score=105.26  Aligned_cols=164  Identities=12%  Similarity=0.206  Sum_probs=121.2

Q ss_pred             hhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhh
Q 014157          101 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET  180 (429)
Q Consensus       101 l~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~  180 (429)
                      |...++.|+|-.-.++++++.+.|+.++++.+.+++.+.+||++...++++|+++..|++.++..   ....        
T Consensus        64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~---~~~~--------  132 (292)
T PRK15094         64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRS---DAEA--------  132 (292)
T ss_pred             cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhc---cCCc--------
Confidence            35678999998777999999999999999999999999999998766789999999999864421   0000        


Q ss_pred             hhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHH
Q 014157          181 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV  260 (429)
Q Consensus       181 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l  260 (429)
                      .++..                 ++. +++++.++.++.++++.|.+++.+.+||+|   +.|   .++|++|..||+..+
T Consensus       133 ~~l~~-----------------l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvD---e~G---~viGiVTleDIle~i  188 (292)
T PRK15094        133 FSMDK-----------------VLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVID---EFG---GVSGLVTIEDILELI  188 (292)
T ss_pred             CCHHH-----------------HcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEe---CCC---CEEEEeEHHHHHHHH
Confidence            01111                 133 455899999999999999999999999996   455   699999999999998


Q ss_pred             HhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHH
Q 014157          261 CRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL  314 (429)
Q Consensus       261 ~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m  314 (429)
                      ...+.......  -...+..+             ...-..+...+++.+..+.+
T Consensus       189 vGei~de~d~~--~~~~i~~~-------------~~~~~~v~G~~~l~dl~~~l  227 (292)
T PRK15094        189 VGEIEDEYDEE--DDIDFRQL-------------SRHTWTVRALASIEDFNEAF  227 (292)
T ss_pred             hCCCccccccc--cccccEEe-------------CCCeEEEEeccCHHHHHHHh
Confidence            86544321100  00112222             12345678888888887776

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.17  E-value=6e-10  Score=93.36  Aligned_cols=124  Identities=15%  Similarity=0.247  Sum_probs=90.4

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++.+.+++++.+|+++|.+.+.+.+||++   +++   +++|++|..++..++........     ........ ....
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~   69 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVD---DNG---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML   69 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEEC---CCC---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence            567889999999999999999999999996   345   79999999999876533210000     00000000 0000


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~Di~~  342 (429)
                      ...+.++|.++++++.+++++.++++.|.+.+...+||++  ++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            1123344777889999999999999999999999999984  4689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=5.1e-10  Score=92.81  Aligned_cols=120  Identities=18%  Similarity=0.307  Sum_probs=93.0

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.++++..+||++   + +   +++|+++..++.+.+...+....       ....+.  ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~--~~~   65 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAG-------ETEKDL--ATL   65 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhcccc-------chHHHH--HHH
Confidence            467899999999999999999999999996   3 5   79999999999987654321100       000000  011


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      ...+.++|..+++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            11234446678999999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=3.5e-10  Score=93.75  Aligned_cols=120  Identities=19%  Similarity=0.355  Sum_probs=90.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+++.+.+||+|   +.+   +++|+++..++++..........   .....       ..+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~   65 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQ---KAG---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA   65 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence            577899999999999999999999999996   445   79999999999864311100000   00000       001


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      ...+.++|..++..+..++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus        66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            11233446677899999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.16  E-value=7.5e-10  Score=90.25  Aligned_cols=110  Identities=14%  Similarity=0.328  Sum_probs=87.0

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      .+.++.+++++.+|++.|.+++.+.++|.+    ++   +++|+++..++++++......      ....++        
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v--------   60 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDTTV--------   60 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcCCH--------
Confidence            467789999999999999888887777763    36   799999999999876532100      011122        


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                          .++|..++.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+++
T Consensus        61 ----~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          61 ----RAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             ----HHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence                333666788999999999999999999999999998 589999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.16  E-value=7.3e-10  Score=90.22  Aligned_cols=109  Identities=17%  Similarity=0.246  Sum_probs=87.8

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.++.++.+|++.|.+++...++|++   + +   +++|+++..++++.+....       .....++.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~-------~~~~~~i~-------   60 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDG-------LPSSTPVG-------   60 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCC-------CCCCCCHH-------
Confidence            456789999999999999999999999995   3 5   7999999999987653210       00112222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|..++..+.+++++.++++.|.+++...+||+++ |+++|++|..|+++
T Consensus        61 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          61 -----EIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             -----HHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence                 236667889999999999999999999999999984 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.15  E-value=8.1e-10  Score=90.61  Aligned_cols=109  Identities=20%  Similarity=0.321  Sum_probs=85.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+++...+||+|....++   +++|+++..+++... .   .        ..+++       
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-~---~--------~~~v~-------   60 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-D---S--------ETPLS-------   60 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-c---c--------CCCHH-------
Confidence            467788999999999999988999999996211146   899999999986311 0   0        11222       


Q ss_pred             ccccCCCCCCCceeecC--CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRP--SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~--~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|......+..  ++++.++++.|.+++...+||++++|+++|++|.+|+++
T Consensus        61 -----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          61 -----EVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             -----HhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence                 235555666655  999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.14  E-value=1.1e-09  Score=89.23  Aligned_cols=110  Identities=22%  Similarity=0.396  Sum_probs=87.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+.+.+.+||++    ++   +++|+++..++++.+......      ....++.       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~~-------   61 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVD----NE---KPVGIITERDLVKKVVSRNLK------PREVPVG-------   61 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEE----CC---EEEEEEEHHHHHHHHhhccCC------cccCCHH-------
Confidence            567789999999999999999999999996    23   699999999999866432100      0111222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|.+++..+.+++++.++++.|.+.+...+||+|++ +++|+++.+|+++
T Consensus        62 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          62 -----EVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             -----HhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence                 3356678899999999999999999999999999865 9999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.14  E-value=8.2e-10  Score=89.47  Aligned_cols=108  Identities=20%  Similarity=0.391  Sum_probs=85.7

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      +++++.+++++.+|++.|.+++.+.+||++   + +   +++|+++..++.+++......       ...++.       
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~-------   60 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPVR-------   60 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCHH-------
Confidence            567889999999999999999999999996   3 5   799999999999876532110       012222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|.+++..+.+++++.+++++|.+ . ..+||++++|+++|++|.+|+++
T Consensus        61 -----~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          61 -----EVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             -----HHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence                 2255678889999999999999987 3 34788988899999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.13  E-value=1.2e-09  Score=88.28  Aligned_cols=105  Identities=22%  Similarity=0.425  Sum_probs=87.0

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++.++.++.+|++.|.+++...+||++   + +   +++|+++..+++..      .       ...++.      
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~------~-------~~~~~~------   55 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK------D-------PDETVE------   55 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc------C-------ccccHH------
Confidence            4677899999999999999888888999995   3 5   89999999999741      0       011222      


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                            ++|...+..+.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        56 ------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          56 ------EIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             ------HhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence                  335567888999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.13  E-value=6.7e-10  Score=94.22  Aligned_cols=109  Identities=21%  Similarity=0.329  Sum_probs=80.8

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccccc-------ccccHHHHHhcCCCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL-------SEMTIHQALQLGQDS  369 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l-------~~~~v~~~l~~~~~~  369 (429)
                      .+.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|+++............       ....+.+++...   
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~---   78 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKG---   78 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhh---
Confidence            4678999999999999999999999999999999999999999998654322110000       001123343210   


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeC
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA  409 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~  409 (429)
                       ...+.|..+++++.+++++.+|++.|.+++++++||+|+
T Consensus        79 -~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          79 -ISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             -hhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence             001123457889999999999999999999999999984

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.13  E-value=6.5e-10  Score=93.03  Aligned_cols=115  Identities=11%  Similarity=0.146  Sum_probs=84.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh--hcccCCCCCcccCCccccccCc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR--YFRHCSSSLPILKLPICAIPVG  284 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~--~~~~~~~~~~~l~~~v~~l~i~  284 (429)
                      +++++.+++++.+|++.|.+++.+.+||++   +.+   +++|+++..|+.+....  .....   ......++      
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v------   66 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVD---SDD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSELTV------   66 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEc---CCC---cEEEEEEHHHHhhChhhHHHHHcC---CCchheEH------
Confidence            467889999999999999999999999996   345   79999999999852210  00000   00011222      


Q ss_pred             ccccccCCCCCCCceee------cCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHH
Q 014157          285 TWVPKIGEPNRRPLAML------RPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA  342 (429)
Q Consensus       285 ~~~~~v~~~~~~~~~~v------~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~  342 (429)
                            .++|.+++..+      .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus        67 ------~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          67 ------ADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             ------HHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence                  23355443332      268899999999999999999999986 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.13  E-value=7.5e-10  Score=89.78  Aligned_cols=107  Identities=21%  Similarity=0.359  Sum_probs=85.2

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++.+++++.++++.|.+++...+||++   +.+   +++|+++..+++...            ....++.      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~------------~~~~~v~------   57 (110)
T cd04601           2 RDPITVSPDATVAEALELMAEYGISGLPVVD---DDG---KLVGIVTNRDLRFET------------DLDKPVS------   57 (110)
T ss_pred             CCCeEeCCCCcHHHHHHHHHHcCCceEEEEc---CCC---EEEEEEEhhHeeecc------------cCCCCHH------
Confidence            3567889999999999999999999999996   346   799999999985310            0011222      


Q ss_pred             cccccCCCCCCCceeecC-CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRP-SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~-~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                            ++|...+..+.. ++++.++++.|.+.+.+.+||++++|+++|++|.+|+++
T Consensus        58 ------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          58 ------EVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             ------HhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence                  235445566666 999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.12  E-value=1.5e-09  Score=87.51  Aligned_cols=111  Identities=25%  Similarity=0.487  Sum_probs=90.1

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++..+.+++++.++++.|.+++.+.+||++   +++   +++|+++.+++++++........       ..         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~---------   59 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVD---DDG---RLVGIVTERDLLRALAEGGLDPL-------VT---------   59 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEEC---CCC---CEEEEEeHHHHHHHHHhccCCcc-------cc---------
Confidence            467789999999999999999999999996   335   79999999999987764322110       00         


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         +.+.|..++..+..++++.++++.|.+.+.+.+||+|++++++|+++..|+++
T Consensus        60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 ---VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             ---HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence               11225557888899999999999999999999999999899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.11  E-value=9.9e-10  Score=112.67  Aligned_cols=116  Identities=14%  Similarity=0.195  Sum_probs=95.7

Q ss_pred             CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccC
Q 014157          204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  283 (429)
Q Consensus       204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  283 (429)
                      +.++++++.+++++.+|+++|.+++++.+||+|....++   +++|++|..|+... .           ....++.+   
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v-~-----------~~~~~V~e---  167 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV-N-----------DRETKLSE---  167 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc-c-----------ccCCcHHH---
Confidence            678999999999999999999999999999996211135   89999999999531 1           11233333   


Q ss_pred             cccccccCCCCCCC--ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          284 GTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       284 ~~~~~~v~~~~~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                               +|.++  ++++.+++++.+|+++|.+++...+||+|++++++|+||++||++....
T Consensus       168 ---------IMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        168 ---------VMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             ---------HhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                     36655  7899999999999999999999999999999999999999999976643

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.11  E-value=1.3e-09  Score=87.71  Aligned_cols=102  Identities=19%  Similarity=0.385  Sum_probs=85.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++..+.+++++.++++.|.+++.+.+||++   + +   +++|+++..++++..             ...++.       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~Giv~~~~l~~~~-------------~~~~~~-------   54 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE---D-G---KLVGIITSRDVRRAH-------------PNRLVA-------   54 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEehHHhhccc-------------ccCCHH-------
Confidence            467789999999999999999999999995   2 5   799999999997521             011222       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  341 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~  341 (429)
                           ++|..++..+.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus        55 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          55 -----DAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             -----HHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence                 235667889999999999999999999999999996 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.10  E-value=5.2e-10  Score=111.50  Aligned_cols=119  Identities=22%  Similarity=0.346  Sum_probs=102.0

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      ++.+..+.+++++.+++.+|+.+|.++|++.+.+++   .++   ..+||+|.+|+.+.+....+.       ...    
T Consensus       152 ~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~---~~~---~~~GIvT~~dl~~~v~~~g~~-------~~~----  214 (610)
T COG2905         152 GEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLD---DSG---PLLGIVTRKDLRSRVIADGRS-------KTQ----  214 (610)
T ss_pred             HHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEc---CCC---CccceeehHHHHHHHHhcCCC-------ccc----
Confidence            556789999999999999999999999999888886   444   689999999999887653221       122    


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                              +|+++|+.++++++..+-+.+|+-+|.+++++++||++ +|+++|++|..||+++..
T Consensus       215 --------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         215 --------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             --------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence                    34555899999999999999999999999999999996 799999999999998765

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.10  E-value=1.5e-09  Score=89.68  Aligned_cols=119  Identities=15%  Similarity=0.298  Sum_probs=89.7

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++++++++.+|+..|.+.+.+.+||+|   +++   +++|+++..++.+...........         ... ....
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~~---------~~~-~~~~   65 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVD---EEG---RLVGIVTDRDLRDASPSPFTTLSE---------HEL-YLLL   65 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEHHHHHHHhhhhcccchh---------hhh-hhhc
Confidence            567889999999999999999999999996   345   799999999998765432211000         000 0000


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      ...+.++|..++.++..++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus        66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            11123336667889999999999999999999999999986 99999999999874

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.09  E-value=1.5e-09  Score=87.43  Aligned_cols=100  Identities=15%  Similarity=0.278  Sum_probs=83.5

Q ss_pred             eecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccccc
Q 014157          209 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP  288 (429)
Q Consensus       209 i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~  288 (429)
                      +++.+++++.+|++.|.+.+...+||++   + +   +++|+++..++.+..              ..++.         
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~--------------~~~~~---------   53 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENAT--------------YGDVV---------   53 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhc--------------ccchh---------
Confidence            4678999999999999999999999996   3 6   799999999997521              01122         


Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         ++|...+.++.+++++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus        54 ---~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          54 ---DYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             ---hhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence               22555688999999999999999999999999998 699999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.09  E-value=2.4e-09  Score=109.10  Aligned_cols=163  Identities=18%  Similarity=0.300  Sum_probs=115.6

Q ss_pred             EeeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCC
Q 014157          139 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND  215 (429)
Q Consensus       139 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~  215 (429)
                      .+|+..+-    ..-+|..++..++......+   .+++.++-. ..++..+      .     ....+.++++++.+++
T Consensus        34 ~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~-~~V~~Vk------~-----~~~~~~~~~vtl~~~~   97 (450)
T TIGR01302        34 NIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQA-EQVKRVK------R-----AENGIISDPVTISPET   97 (450)
T ss_pred             CCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHH-HHHhhhc------c-----ccCceecCceEeCCCC
Confidence            46777542    34578888877776554322   122211111 1111111      1     1234678899999999


Q ss_pred             cHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC
Q 014157          216 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR  295 (429)
Q Consensus       216 sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~  295 (429)
                      ++.+|+++|.+++++++||++.+...+   +++|+++.+|++...     .       ...++.+            +|.
T Consensus        98 tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V~d------------vm~  150 (450)
T TIGR01302        98 TVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPVSE------------VMT  150 (450)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCHHH------------hhC
Confidence            999999999999999999997311115   799999999996311     0       1222333            366


Q ss_pred             -CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          296 -RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       296 -~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                       .+++++.+++++.++++.|.+++.+.+||+|++|+++|+||.+||++..
T Consensus       151 ~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       151 REEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence             4889999999999999999999999999999999999999999999754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.09  E-value=1.5e-09  Score=88.28  Aligned_cols=102  Identities=15%  Similarity=0.303  Sum_probs=82.5

Q ss_pred             cCCCCcHHHHHHHHHhcC-----CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          211 AGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       211 v~~~~sl~da~~~m~~~~-----i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      +.+++++.++++.|.+++     ...+||++   +++   +++|+++.+++++.      .       ...++       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd---~~~---~~~G~v~~~~l~~~------~-------~~~~v-------   55 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVD---EEG---RLLGVVSLRDLLLA------D-------PDTPV-------   55 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEEC---CCC---CEEEEEEHHHHhcC------C-------CcchH-------
Confidence            578899999999998777     46889995   345   79999999988641      0       01122       


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                           ++++.+++..+.+++++.++++.|.+.+...+||+|++|+++|++|..|+++.
T Consensus        56 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          56 -----SDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             -----HHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence                 23356678899999999999999999999999999988999999999999863

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.08  E-value=1.2e-09  Score=111.85  Aligned_cols=110  Identities=21%  Similarity=0.261  Sum_probs=90.4

Q ss_pred             ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccc
Q 014157          208 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV  287 (429)
Q Consensus       208 ~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~  287 (429)
                      ..++++++|+.+|++.|.++++..+||+|...+++   +++|++|..|+...     .      .....++++       
T Consensus       107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~~V~d-------  165 (502)
T PRK07107        107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDTKVKD-------  165 (502)
T ss_pred             CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCCCHHH-------
Confidence            36899999999999999999999999997211246   89999999998521     0      012233333       


Q ss_pred             cccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          288 PKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       288 ~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                           +|.+  +++++.+++++.+|+++|.+++++.+||+|++++++|+||++|+++.
T Consensus       166 -----IMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        166 -----FMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             -----HhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence                 3765  78899999999999999999999999999988999999999999874

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.07  E-value=2.1e-09  Score=110.27  Aligned_cols=115  Identities=24%  Similarity=0.276  Sum_probs=94.6

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  282 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  282 (429)
                      .+..+++++.+++++.+|+++|.+++++.+||++.+..++   +++|+++.+|+.. ..           ....+++   
T Consensus       101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~-----------~~~~~V~---  162 (495)
T PTZ00314        101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK-----------DKSTPVS---  162 (495)
T ss_pred             ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc-----------cCCCCHH---
Confidence            3567889999999999999999999999999996322235   8999999999862 10           0122333   


Q ss_pred             CcccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          283 VGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       283 i~~~~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                               ++|.+  +++++.+++++.+|+++|.+++...+||+|++++++|+||++||++..
T Consensus       163 ---------diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        163 ---------EVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR  217 (495)
T ss_pred             ---------HhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence                     33665  789999999999999999999999999999999999999999998653

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.07  E-value=2.9e-09  Score=91.27  Aligned_cols=126  Identities=27%  Similarity=0.478  Sum_probs=94.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccC----CCCCcccCCcccccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC----SSSLPILKLPICAIP  282 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~----~~~~~~l~~~v~~l~  282 (429)
                      +++++.+++++.+|++.|.+++...+||++   + +   +++|+++..++++++.......    ++.......++.++ 
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   73 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLD---G-G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF-   73 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeE---C-C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence            567899999999999999999999999996   3 5   7999999999998775432100    00011112222221 


Q ss_pred             Cccc-----------ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          283 VGTW-----------VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       283 i~~~-----------~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                       ..|           ...+.++|..++.++..++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus        74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence             111           11244557778999999999999999999999999999987 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]

Probab=99.05  E-value=1.1e-10  Score=111.15  Aligned_cols=45  Identities=36%  Similarity=0.642  Sum_probs=43.2

Q ss_pred             CcccCCceeEEEEEECCeeeecCCCCcccCCCCCcceEEEecCCC
Q 014157            1 MFFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPN   45 (429)
Q Consensus         1 ~~~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~~n~~~~~~~~   45 (429)
                      +++||+|.|+|||+|||+|+||++.|+++|..|+.||++.|.+.+
T Consensus       121 ~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~~N~i~v~~~~  165 (289)
T KOG1616|consen  121 ILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNLNNILEVQDPD  165 (289)
T ss_pred             eEecCCceEEEEEecCCceecCCCCcccccccCCcccceEecCcc
Confidence            478999999999999999999999999999999999999999776

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.05  E-value=1.4e-09  Score=103.53  Aligned_cols=110  Identities=16%  Similarity=0.229  Sum_probs=90.7

Q ss_pred             CccCCCC-ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          201 GKAFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       201 g~~~~~~-~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      +++|.++ +..+.+++++.+|++.|.+.+.+.+||+|   +++   +++|+++..|+++.+....        ....+++
T Consensus       158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd---~~g---~~~Givt~~dl~~~~~~~~--------~~~~~v~  223 (268)
T TIGR00393       158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD---ENN---QLVGVFTDGDLRRALLGGG--------SLKSEVR  223 (268)
T ss_pred             HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe---CCC---CEEEEEEcHHHHHHHhcCC--------cccCcHH
Confidence            4467777 99999999999999999999999999996   445   7999999999987543210        1122333


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEe
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC  336 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt  336 (429)
                                  ++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+
T Consensus       224 ------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       224 ------------DFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             ------------HhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence                        347778899999999999999999999999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.05  E-value=1.5e-09  Score=114.38  Aligned_cols=120  Identities=16%  Similarity=0.272  Sum_probs=97.5

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +++|.+++.++++++++.++++.|.+++.+.+||+|   +++   +++|+++.+|+.+.+.....       ....+   
T Consensus       450 ~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD---~~g---~lvGiVt~~dL~~~l~~~~~-------~~~~~---  513 (574)
T PRK01862        450 RELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVD---DDG---RFRGAVALKDITSDLLDKRD-------TTDKT---  513 (574)
T ss_pred             HHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEc---CCC---eEEEEEEHHHHHHHhhcccc-------cccch---
Confidence            446788889999999999999999999999999996   455   79999999999875432100       00112   


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHHHHh
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAK  345 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~--g~lvGivt~~Di~~~~~  345 (429)
                               +.++|.+++.++++++++.++++.|.+++.+.+||+|++  ++++|++|++|+.+...
T Consensus       514 ---------v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        514 ---------AADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             ---------HHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence                     334477788999999999999999999999999999876  58999999999997654

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.04  E-value=3.4e-09  Score=85.80  Aligned_cols=100  Identities=16%  Similarity=0.205  Sum_probs=85.2

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCC--CCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  284 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~--~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  284 (429)
                      ....+.+++++.++...|.+.+...+||++  ..  ++   +++|+++.+++.+....                      
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~---~~~G~v~~~dl~~~~~~----------------------   55 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVD--STEESP---RLVGYILRSQLVVALKN----------------------   55 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEc--CCCCCC---EEEEEEeHHHHHHHHHH----------------------
Confidence            456789999999999999998888999996  22  46   79999999999865432                      


Q ss_pred             ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          285 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       285 ~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                              +|.+++.++.+++++.++++.|.+++.+.+||++ +|+++|++|++|+.+
T Consensus        56 --------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 --------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             --------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence                    1445778999999999999999999999999995 789999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.03  E-value=3.2e-09  Score=87.50  Aligned_cols=113  Identities=12%  Similarity=0.189  Sum_probs=86.6

Q ss_pred             CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          207 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~-i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++.++.+++++.+|++.|...+ .+.+||++   + +   +++|+++..++++++...+...    .....         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~~----~~~~~---------   61 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGRA----LYGKK---------   61 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhHH----HHcCC---------
Confidence            5667899999999999998877 88999996   3 6   7999999999987554321000    00011         


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCC---CEEEEECCCCcEEEEEeHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQV---SSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~---~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                         .++++|..++..+.+++++.++++.|.+++.   ...+|++++|+++|++|..|+++
T Consensus        62 ---~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          62 ---PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             ---cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence               2334477788999999999999999988775   34568888899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.97  E-value=7.1e-09  Score=105.14  Aligned_cols=113  Identities=19%  Similarity=0.335  Sum_probs=95.8

Q ss_pred             CCceeecCCCCHHHHHHHHHhcCCCEEEEEC-CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccc
Q 014157          296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE  374 (429)
Q Consensus       296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd-~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~  374 (429)
                      .++..++.+.++.++.+.+.+++++++||.+ +.+.++|++..+|++.....+.. .     ......            
T Consensus       216 ~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~~------------  277 (429)
T COG1253         216 TDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRVL------------  277 (429)
T ss_pred             ccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhhc------------
Confidence            3688899999999999999999999999998 56799999999999986655321 0     111111            


Q ss_pred             ccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          375 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       375 ~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                        -.+++.++++.++.++++.|.+.+.|-..|+| |.|.+.|+||..||+..++|
T Consensus       278 --~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD-EyG~~~GlVTleDIiEeIvG  329 (429)
T COG1253         278 --VRPPLFVPETLSLSDLLEEFREERTHMAIVVD-EYGGVEGLVTLEDIIEEIVG  329 (429)
T ss_pred             --ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE-cCCCeEEEeEHHHHHHHHhC
Confidence              12788999999999999999999999999999 69999999999999999886

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.94  E-value=5.1e-09  Score=105.04  Aligned_cols=115  Identities=16%  Similarity=0.298  Sum_probs=100.1

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  363 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~-----~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l  363 (429)
                      .++.+|...++++..+.|+.+++..+++     .....+.|+|++++++|+++.++++..-.          +..+.++|
T Consensus       133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~im  202 (451)
T COG2239         133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKDLM  202 (451)
T ss_pred             hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHHHh
Confidence            4666688999999999999999999884     35688999999999999999999874221          35678877


Q ss_pred             hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          364 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                                   .+.++++.++++..++.+.+.+++.-.+|||| ++++++|+||..|++..+
T Consensus       203 -------------~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd-~~~~LiG~itiDDiidvi  252 (451)
T COG2239         203 -------------EDDVVSVLADDDQEEVARLFEKYDLLAVPVVD-EDNRLIGIITIDDIIDVI  252 (451)
T ss_pred             -------------cccceeecccCCHHHHHHHHHHhCCeecceEC-CCCceeeeeeHHHHHHHH
Confidence                         45699999999999999999999999999999 599999999999998765

>PRK11573 hypothetical protein; Provisional

Probab=98.94  E-value=3.4e-08  Score=99.46  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=108.5

Q ss_pred             hhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhh
Q 014157          102 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH  181 (429)
Q Consensus       102 ~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~  181 (429)
                      ++.++.|+|-+-.+++.++.+.|+.++++.+.+++.+..||++.+..+++|++...|++..+..    +...        
T Consensus       185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~----~~~~--------  252 (413)
T PRK11573        185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTE----KKEF--------  252 (413)
T ss_pred             CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhc----cCcC--------
Confidence            5788999999999999999999999999999999999999999877899999999999864421    0111        


Q ss_pred             hHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH
Q 014157          182 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  261 (429)
Q Consensus       182 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~  261 (429)
                      ....+.+               ..+++..++++.++.++++.|.+++.|-+.|+|   +.|   ...|++|..||+..+.
T Consensus       253 ~~~~l~~---------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---EyG---~~~GiVTleDilEeiv  311 (413)
T PRK11573        253 TKENMLR---------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVEDILEEIV  311 (413)
T ss_pred             CHHHHHh---------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---cCC---CeEEEeeHHHHHHHHh
Confidence            1111111               235788999999999999999999999999997   556   6999999999999888


Q ss_pred             hhccc
Q 014157          262 RYFRH  266 (429)
Q Consensus       262 ~~~~~  266 (429)
                      .....
T Consensus       312 Gei~d  316 (413)
T PRK11573        312 GDFTT  316 (413)
T ss_pred             CCCCc
Confidence            66543

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.93  E-value=7.3e-09  Score=97.66  Aligned_cols=113  Identities=15%  Similarity=0.305  Sum_probs=95.6

Q ss_pred             ccCC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          202 KAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       202 ~~~~--~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++|.  .....+.+++++.+-.++-.+.+..|.||+|   ...   +++|++|.+|++..             .-+.++ 
T Consensus       192 di~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn---~~~---kvvGvVt~rDv~~~-------------~~~t~i-  251 (432)
T COG4109         192 DIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVN---RSM---KVVGVVTMRDVLDK-------------KPSTTI-  251 (432)
T ss_pred             HhccccccceeccccccHHHHHHHHHHcCCCccceec---ccc---eEEEEEEehhhhcC-------------CCCccH-
Confidence            3444  6677889999999999999999999999996   444   79999999999741             112233 


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                                 ..+|+++++++.+.+++..+.++|.=.++.-+||+|++.+++|+||++|++..+.
T Consensus       252 -----------eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         252 -----------EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             -----------HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence                       3348889999999999999999999999999999999999999999999997654

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.92  E-value=2.5e-09  Score=76.33  Aligned_cols=54  Identities=30%  Similarity=0.501  Sum_probs=50.3

Q ss_pred             ccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          375 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       375 ~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                      +|.++++++++++++.++++.|.+++++++||+| ++|+++|+||.+||++++++
T Consensus         4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d-~~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVD-EDGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEES-TTSBEEEEEEHHHHHHHHHG
T ss_pred             CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHhhhhC
Confidence            4577999999999999999999999999999999 58999999999999999864

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.91  E-value=2.9e-08  Score=80.06  Aligned_cols=104  Identities=23%  Similarity=0.400  Sum_probs=84.0

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ++.++.++.++.+|+..|.+.+...+||++   +.+   +++|+++..++++..     .        ..++.       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~g~v~~~~l~~~~-----~--------~~~~~-------   55 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVK---KSG---ELVGIITRKDLLRNP-----E--------EEQLA-------   55 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEHHHHHhcc-----c--------cchHH-------
Confidence            467888999999999999998889999996   335   799999999997410     0        01122       


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                           ++|..++.++..++++.++++.|.+++.+.+||+|+ |+++|+++..|+++
T Consensus        56 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          56 -----LLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             -----HHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                 224557888999999999999999999999999984 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.88  E-value=1.7e-08  Score=103.48  Aligned_cols=117  Identities=12%  Similarity=0.177  Sum_probs=91.6

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++++|.+++.++.+++++.+|++.|.+++++.+||+|   +++   +++|+++..|+++.+.....       ....++.
T Consensus       337 v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~  403 (454)
T TIGR01137       337 VKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT---EAG---KVLGSVTLRELLSALFAGKA-------NPDDAVS  403 (454)
T ss_pred             HHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHHhccCC-------CcCCCHH
Confidence            3457888999999999999999999999999999996   345   79999999999886543100       0112233


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                                  ++|.+++.++.+++++.+++++|.+++   .++|+++++++|+||++|+++.+
T Consensus       404 ------------~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       404 ------------KVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             ------------HhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence                        336678889999999999999998754   35555579999999999998753

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.84  E-value=3e-08  Score=84.01  Aligned_cols=114  Identities=17%  Similarity=0.173  Sum_probs=78.9

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCc-ccCCccccccCcc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP-ILKLPICAIPVGT  285 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~-~l~~~v~~l~i~~  285 (429)
                      .++++.+++++.+|++.|.+++...+||+|   +.+   +++|++|..|+++++............ ......  ..+..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD---~~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~v~~   73 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD---SDD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNT--CLVSS   73 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEEHHHHHHHHhhccccccccchhhccccc--ccHHH
Confidence            567899999999999999999999999996   446   799999999999877542111000000 000000  00001


Q ss_pred             ccc--ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC
Q 014157          286 WVP--KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN  328 (429)
Q Consensus       286 ~~~--~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~  328 (429)
                      .+.  .+.+.|..+++++.+++++.+|++.|.+++++++||+|+.
T Consensus        74 i~~~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          74 VCTKGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             HhhhhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            110  0112245678899999999999999999999999999853

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.83  E-value=1.9e-07  Score=92.33  Aligned_cols=108  Identities=18%  Similarity=0.283  Sum_probs=91.0

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCccccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR  376 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~  376 (429)
                      ......++.+..++++.|...+...+.|+|+++++.|.++.+++.......         .++.+.+             
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------  308 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQDVL-------------  308 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhhhh-------------
Confidence            344566777899999999999999999999999999999999987655431         2355544             


Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      .....++.++++|.+++..|.+++.. +|||| ++|+++|+||+.++++++.
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVD-EDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             ccCCceECCCCcHHHHHHHHHhCCCC-EEEEC-CCCcEEEEEEHHHHHHHHH
Confidence            34677899999999999999999988 99999 5899999999999999885

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.83  E-value=8.8e-09  Score=73.48  Aligned_cols=55  Identities=29%  Similarity=0.507  Sum_probs=50.6

Q ss_pred             CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          291 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       291 ~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                      +++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+||++.+.
T Consensus         2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            3457889999999999999999999999999999999999999999999998653

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd02861 E_set_proteins_like E or "early" set-like proteins

Probab=98.82  E-value=3.9e-09  Score=81.53  Aligned_cols=38  Identities=32%  Similarity=0.507  Sum_probs=34.9

Q ss_pred             cccCCceeEEEEEECCeee-ecCCCCc-ccCCCCCcceEE
Q 014157            2 FFYIVHYVQYKFCVDGEWR-HDEHQPF-ISSEYGIVNTVL   39 (429)
Q Consensus         2 ~~l~~g~~~ykf~vdg~w~-~~~~~~~-~~~~~g~~~n~~   39 (429)
                      ++|++|.|+|||+|||+|. +||..+. ..|.+|+.||+|
T Consensus        42 ~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n~v~   81 (82)
T cd02861          42 VELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKNAVF   81 (82)
T ss_pred             EeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccceEc
Confidence            5799999999999999999 9999985 789999999987

These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.76  E-value=2.9e-08  Score=88.77  Aligned_cols=112  Identities=16%  Similarity=0.396  Sum_probs=98.6

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ..+++..+.++.+++..+.+..+|++||+.+ .+.+.|++-.+|++..+.....      ...+.+++            
T Consensus        78 QM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL------------  139 (293)
T COG4535          78 QMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL------------  139 (293)
T ss_pred             HheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc------------
Confidence            5789999999999999999999999999965 5689999999999997655321      24577766            


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                        +|.+.|+++-.+...++-+...+.|...||| |-|-+-|.||..||+..++|
T Consensus       140 --RPav~VPESKrvd~lLkeFR~~RnHMAIViD-EfGgVsGLVTIEDiLEqIVG  190 (293)
T COG4535         140 --RPAVVVPESKRVDRLLKEFRSQRNHMAIVID-EFGGVSGLVTIEDILEQIVG  190 (293)
T ss_pred             --ccceecccchhHHHHHHHHHhhcCceEEEEe-ccCCeeeeEEHHHHHHHHhc
Confidence              4788999999999999999999999999999 69999999999999999876

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.70  E-value=1.2e-07  Score=90.59  Aligned_cols=122  Identities=15%  Similarity=0.255  Sum_probs=101.2

Q ss_pred             ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          289 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       289 ~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      +|.|+|.+  .+..++.+++.+++.+.+...-+.++|+..+ -+.++|++..+|+++++.++..       .+-.++++.
T Consensus       201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------~~k~d~~~~  273 (423)
T COG4536         201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------FTKEDILRA  273 (423)
T ss_pred             eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------ccHhHHHHH
Confidence            35666754  5889999999999999999999999999943 4579999999999998866431       223333322


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                 -.++.+++.++++.+-+..|.+++-|--.||| |-|.+.|+||+.||+..++|
T Consensus       274 -----------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD-EYG~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         274 -----------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD-EYGDIQGLVTLEDILEEIVG  325 (423)
T ss_pred             -----------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEe-ccCcEEeeeeHHHHHHHHhc
Confidence                       23688999999999999999999999999999 69999999999999999876

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=3.4e-07  Score=91.66  Aligned_cols=104  Identities=13%  Similarity=0.181  Sum_probs=88.0

Q ss_pred             ecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCCCc
Q 014157          301 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC  380 (429)
Q Consensus       301 v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~  380 (429)
                      ..++.+..+++..|...+.+.++|+|++++++|+++..++.+....+         .++.+.+             ....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~  347 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP  347 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence            34667889999999999999999999999999999999997654431         2355544             3357


Q ss_pred             eEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          381 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       381 ~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      .++.++++|.+++..+.+.... +|||| ++|+++|+||..++++.+.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~-~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVD-EDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEEC-CCCcEEEEEEHHHHHHHHH
Confidence            7899999999999999998766 99999 5999999999999999875

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.57  E-value=8.4e-07  Score=90.11  Aligned_cols=130  Identities=18%  Similarity=0.341  Sum_probs=108.0

Q ss_pred             hhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhh
Q 014157          102 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH  181 (429)
Q Consensus       102 ~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~  181 (429)
                      .++++-+.|-+...++.++.+.++.++++.+.+++.+..||++.....++|++...|++.......   ....       
T Consensus       204 ~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~---~~~~-------  273 (429)
T COG1253         204 DDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQ---SDLD-------  273 (429)
T ss_pred             CCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCc---cccc-------
Confidence            578899999888999999999999999999999999999999977789999999999987653211   0000       


Q ss_pred             hHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH
Q 014157          182 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC  261 (429)
Q Consensus       182 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~  261 (429)
                       ..      .            .-++++.+++..++.++++.|.+.+.|-..|+|   +-|   ...|++|..||+..+.
T Consensus       274 -~~------~------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD---EyG---~~~GlVTleDIiEeIv  328 (429)
T COG1253         274 -LR------V------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVD---EYG---GVEGLVTLEDIIEEIV  328 (429)
T ss_pred             -hh------h------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE---cCC---CeEEEeEHHHHHHHHh
Confidence             00      0            123888999999999999999999999999997   556   6999999999999888


Q ss_pred             hhccc
Q 014157          262 RYFRH  266 (429)
Q Consensus       262 ~~~~~  266 (429)
                      ..+..
T Consensus       329 Gei~d  333 (429)
T COG1253         329 GEIPD  333 (429)
T ss_pred             CCCcC
Confidence            75543

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.56  E-value=1.5e-07  Score=90.54  Aligned_cols=107  Identities=19%  Similarity=0.289  Sum_probs=92.6

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  373 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~  373 (429)
                      +++.+.++.++.++++....++++.+||+.+   .++++|+||.+|+-.+ .+.        ...+.++|          
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~vm----------  177 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSDVM----------  177 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhhhc----------
Confidence            6788999999999999999999999999964   4689999999999766 221        35567766          


Q ss_pred             cccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          374 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       374 ~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                         +.+.++.+.+.+|.++-++|.+++...||||| ++|.++.+|+++||.+.
T Consensus       178 ---t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~-~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  178 ---TKNPVTGAQGITLKEANEILKKIKKGKLPVVD-DKGELVAMLSRTDLMKN  226 (503)
T ss_pred             ---ccccccccccccHHHHHHHHHhhhcCCcceec-cCCceeeeeehhhhhhh
Confidence               45668889999999999999999999999999 59999999999999875

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.43  E-value=3.5e-07  Score=92.33  Aligned_cols=149  Identities=19%  Similarity=0.339  Sum_probs=111.9

Q ss_pred             ccccccCccccc-------ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC-----CCcEEEEEeHHHHHHHH
Q 014157          277 PICAIPVGTWVP-------KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-----NDSLLDIYCRSDITALA  344 (429)
Q Consensus       277 ~v~~l~i~~~~~-------~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-----~g~lvGivt~~Di~~~~  344 (429)
                      .++.++.-.|.+       .++++|..+++++..-+.+..+.+.+....++++||+|+     .+++.|+|-++.++.+.
T Consensus       564 ~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL  643 (762)
T KOG0474|consen  564 QLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL  643 (762)
T ss_pred             hccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence            445566555543       367899999999999999999999999999999999985     15899999999999877


Q ss_pred             hccccccc--ccccc------cHHHHHhcCCC---C----------CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCE
Q 014157          345 KDKAYAHI--NLSEM------TIHQALQLGQD---S----------YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRR  403 (429)
Q Consensus       345 ~~~~~~~l--~l~~~------~v~~~l~~~~~---~----------~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~  403 (429)
                      +++.+...  +..+.      +..++.....+   .          -....+|.+.++++.+++++.+++..+..-+.|+
T Consensus       644 ~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRh  723 (762)
T KOG0474|consen  644 KKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRH  723 (762)
T ss_pred             HhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhccee
Confidence            76554321  11112      22222211000   0          0011368889999999999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEeHHHHHHH
Q 014157          404 LVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       404 l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      +.||+ ...+++|++|++|+.++
T Consensus       724 LlVv~-~~~~~~gilTR~D~~~~  745 (762)
T KOG0474|consen  724 LLVVP-KTNRVVGILTRKDLARY  745 (762)
T ss_pred             EEEec-CCCceeEEEehhhhhhH
Confidence            99999 58889999999999854

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.36  E-value=9.5e-06  Score=77.77  Aligned_cols=130  Identities=19%  Similarity=0.309  Sum_probs=108.0

Q ss_pred             hccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 014157          103 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  182 (429)
Q Consensus       103 ~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~  182 (429)
                      .-|+-|+|-+.+.+..+|.+.|.++..+.+...-...+|||..+..+++|++-..|+++++.+..    +++.+     +
T Consensus       199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~-----d  269 (423)
T COG4536         199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKE-----D  269 (423)
T ss_pred             cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHh-----H
Confidence            56788888888999999999999999999999999999999988888999999999998884321    12111     1


Q ss_pred             HHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh
Q 014157          183 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  262 (429)
Q Consensus       183 i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~  262 (429)
                      +..                  .-.+++.++..+++.+-+..+.+++-|-..|+|   +-|   .+.|++|.+||+.-+..
T Consensus       270 ~~~------------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD---EYG---~i~GLVTLEDIlEEIVG  325 (423)
T COG4536         270 ILR------------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD---EYG---DIQGLVTLEDILEEIVG  325 (423)
T ss_pred             HHH------------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEe---ccC---cEEeeeeHHHHHHHHhc
Confidence            111                  124678899999999999999999999899997   667   89999999999998887


Q ss_pred             hcc
Q 014157          263 YFR  265 (429)
Q Consensus       263 ~~~  265 (429)
                      .|.
T Consensus       326 dft  328 (423)
T COG4536         326 DFT  328 (423)
T ss_pred             ccc
Confidence            665

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.31  E-value=2.7e-06  Score=82.02  Aligned_cols=163  Identities=17%  Similarity=0.240  Sum_probs=115.7

Q ss_pred             cEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCC---CCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCC
Q 014157          138 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN  214 (429)
Q Consensus       138 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~  214 (429)
                      ...|+..+    ...-+|.++-..++..+..-+   .+-+.+ .....+..|+..+..+           ..+++.+.|+
T Consensus        61 l~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe-~QA~~v~~vK~~~~g~-----------~~~p~v~sp~  124 (503)
T KOG2550|consen   61 LNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPE-DQADMVRRVKNYENGF-----------INNPIVISPT  124 (503)
T ss_pred             ccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHH-HHHHHHHHHHHhhccc-----------ccCCcccCCc
Confidence            33576653    345577777776665544211   222222 2223456666554433           4567789999


Q ss_pred             CcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCC
Q 014157          215 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN  294 (429)
Q Consensus       215 ~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~  294 (429)
                      .++.++++.-..+++..+||.....-.   ++++|++|.+||- |+.++           ...            +.++|
T Consensus       125 ~tvg~v~~~k~~~gF~g~pvTe~g~~~---~KLvG~vtsrdi~-f~~~~-----------~~~------------~~~vm  177 (503)
T KOG2550|consen  125 TTVGEVKEAKEKHGFSGIPVTEDGKRG---SKLVGIITSRDIQ-FLEDN-----------SLL------------VSDVM  177 (503)
T ss_pred             ccchhhhhhcccccccccccccCCccc---ceeEEEEehhhhh-hhhcc-----------cch------------hhhhc
Confidence            999999999999999999999422222   3899999999984 44211           111            33447


Q ss_pred             CCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       295 ~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                      .+..++.....++.++-+++.+.+...+||||++|+++.++++.||.+.
T Consensus       178 t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  178 TKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             ccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence            7777889999999999999999999999999999999999999999763

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.28  E-value=1.5e-05  Score=78.89  Aligned_cols=110  Identities=11%  Similarity=0.236  Sum_probs=87.5

Q ss_pred             CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccc
Q 014157          207 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW  286 (429)
Q Consensus       207 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~  286 (429)
                      ......++.+..+++..|...+...+.|++   +.+   ++.|.++.+++..+....            ..+.+.     
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~-----  307 (363)
T TIGR01186       251 GPITKTADKGPRSALQLMRDERVDSLYVVD---RQN---KLVGVVDVESIKQARKKA------------QGLQDV-----  307 (363)
T ss_pred             cceeecCCCCHHHHHHHHHhcCCceEEEEc---CCC---CEEEEEeHHHHHHHhhcC------------Cchhhh-----
Confidence            334566777899999999999999999996   444   799999999987655321            011111     


Q ss_pred             ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 014157          287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  347 (429)
Q Consensus       287 ~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~  347 (429)
                             +.....++.+++++.+++..|.+++.. +||+|++|+++|+||+.+++..+...
T Consensus       308 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~  360 (363)
T TIGR01186       308 -------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS  360 (363)
T ss_pred             -------hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence                   334567899999999999999999988 99999999999999999999876543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.12  E-value=3.9e-05  Score=76.91  Aligned_cols=105  Identities=12%  Similarity=0.175  Sum_probs=84.0

Q ss_pred             cCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCccccccc
Q 014157          211 AGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKI  290 (429)
Q Consensus       211 v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v  290 (429)
                      ..++.+..+|+..|..++...+.|+|   +.+   +++|+++..++.+.....            .++.+.         
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~~~~---------  342 (400)
T PRK10070        290 KTPGFGPRSALKLLQDEDREYGYVIE---RGN---KFVGAVSIDSLKTALTQQ------------QGLDAA---------  342 (400)
T ss_pred             cCCCCCHHHHHHHHHhcCCceEEEEc---CCC---cEEEEEeHHHHHhhhhcC------------Cchhhh---------
Confidence            44677899999999999999999996   555   799999999997654311            111111         


Q ss_pred             CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          291 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       291 ~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                         +.....++.+++++.+++..+.+.... +||+|++|+++|+|+..++++.+..
T Consensus       343 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        343 ---LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             ---hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence               334567899999999999999987665 9999999999999999999987654

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=97.98  E-value=6.9e-05  Score=67.50  Aligned_cols=129  Identities=14%  Similarity=0.270  Sum_probs=104.8

Q ss_pred             hccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhh
Q 014157          103 THTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHT  182 (429)
Q Consensus       103 ~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~  182 (429)
                      ..++.|.|-..++++++..+.++.+.+..+.+...+.-||+..++..+.|+|-+.|++.++.   ++....        .
T Consensus        66 dl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~---~~~~~F--------~  134 (293)
T COG4535          66 DLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMR---SDAEPF--------D  134 (293)
T ss_pred             HhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhc---CCcccc--------c
Confidence            34555666666799999999999999999999999999999988889999999999998763   211111        1


Q ss_pred             HHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHh
Q 014157          183 ISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR  262 (429)
Q Consensus       183 i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~  262 (429)
                      ++.                  +-+|.+.++++-.+...++-+..++.|...|+|   +-|   -+-|++|..||+..+..
T Consensus       135 i~~------------------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViD---EfG---gVsGLVTIEDiLEqIVG  190 (293)
T COG4535         135 IKE------------------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVID---EFG---GVSGLVTIEDILEQIVG  190 (293)
T ss_pred             HHH------------------hcccceecccchhHHHHHHHHHhhcCceEEEEe---ccC---CeeeeEEHHHHHHHHhc
Confidence            211                  247889999999999999999999999999997   455   59999999999999876


Q ss_pred             hccc
Q 014157          263 YFRH  266 (429)
Q Consensus       263 ~~~~  266 (429)
                      ....
T Consensus       191 dIED  194 (293)
T COG4535         191 DIED  194 (293)
T ss_pred             cccc
Confidence            5543

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.96  E-value=2.2e-05  Score=79.67  Aligned_cols=144  Identities=14%  Similarity=0.205  Sum_probs=105.0

Q ss_pred             CCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhh-cccC-CCC--Ccc-
Q 014157          199 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY-FRHC-SSS--LPI-  273 (429)
Q Consensus       199 ~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~-~~~~-~~~--~~~-  273 (429)
                      .++++|+++++++..-+.+....+.+.....+..||+|.. +.+....+.|++-.+.++..+... +.+. +..  .+. 
T Consensus       583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~-~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~  661 (762)
T KOG0474|consen  583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEP-PSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVR  661 (762)
T ss_pred             hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCC-CCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchh
Confidence            4567899999999999999999999999999999999853 222123789999999998877543 2111 000  000 


Q ss_pred             ----------cCCccccccCccccc----ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHH
Q 014157          274 ----------LKLPICAIPVGTWVP----KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSD  339 (429)
Q Consensus       274 ----------l~~~v~~l~i~~~~~----~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~D  339 (429)
                                -..+++++.+.....    ....+|++.+.++.+++++..++.++++-+.+++.||+...+.+|++|++|
T Consensus       662 ~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D  741 (762)
T KOG0474|consen  662 RKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKD  741 (762)
T ss_pred             hcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhh
Confidence                      011222322221110    123567888999999999999999999999999999998888999999999


Q ss_pred             HHHH
Q 014157          340 ITAL  343 (429)
Q Consensus       340 i~~~  343 (429)
                      +.+.
T Consensus       742 ~~~~  745 (762)
T KOG0474|consen  742 LARY  745 (762)
T ss_pred             hhhH
Confidence            9854

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.88  E-value=2.8e-05  Score=63.72  Aligned_cols=53  Identities=26%  Similarity=0.454  Sum_probs=47.8

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      +.++|.+++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++.+||..
T Consensus        60 v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          60 VRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             HHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            45557778899999999999999999999999999999999999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.79  E-value=7.2e-05  Score=50.00  Aligned_cols=47  Identities=38%  Similarity=0.578  Sum_probs=42.8

Q ss_pred             ceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          380 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       380 ~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                      +.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence            467899999999999999999999999994 78999999999998875

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.78  E-value=5.8e-05  Score=61.82  Aligned_cols=48  Identities=21%  Similarity=0.425  Sum_probs=44.0

Q ss_pred             CCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       377 ~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                      ..++.++.+++++.++++.|.+.+.+.+||+| ++|+++|+||..||.+
T Consensus        65 ~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd-~~~~l~Givt~~dl~~  112 (113)
T cd04597          65 NRKPVTARPNDPLREALNLMHEHNIRTLPVVD-DDGTPAGIITLLDLAE  112 (113)
T ss_pred             CCCCCEECCcCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHhhc
Confidence            55788999999999999999999999999999 4899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=97.70  E-value=0.00031  Score=71.71  Aligned_cols=128  Identities=13%  Similarity=0.199  Sum_probs=88.6

Q ss_pred             ceeecCC-CCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHHHHhcccccccccccccH------HHHHhcCCC
Q 014157          298 LAMLRPS-ASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTI------HQALQLGQD  368 (429)
Q Consensus       298 ~~~v~~~-~sl~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v------~~~l~~~~~  368 (429)
                      +..+..+ +++.+...+|.+..++.+||+=  +..+++|++.++++...+.......--....+.      ..+.....+
T Consensus       558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~  637 (696)
T KOG0475|consen  558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS  637 (696)
T ss_pred             heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence            5555554 8999999999999999999983  366899999999987544321100000000111      111110011


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                      .-....+|.-.+.++...++..-+++++.+-+++.+.|..  +|++.|+||..|++++.
T Consensus       638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT  694 (696)
T ss_pred             CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence            1111235677889999999999999999999999887776  89999999999999874

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.62  E-value=0.00021  Score=47.66  Aligned_cols=47  Identities=30%  Similarity=0.543  Sum_probs=42.1

Q ss_pred             ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          298 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       298 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                      +.++.+++++.++++.|.+++.+.+||++++++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            45678899999999999999999999999889999999999997653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.30  E-value=0.0034  Score=62.61  Aligned_cols=84  Identities=19%  Similarity=0.307  Sum_probs=64.3

Q ss_pred             cCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHH
Q 014157          317 AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL  396 (429)
Q Consensus       317 ~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m  396 (429)
                      ++.+.+.|+|.     |+++..+...+.....       ..++.+ +             .....++++++++.+++..+
T Consensus       298 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~  351 (382)
T TIGR03415       298 RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-------------EAAPTVINPDTLMRDVLAAR  351 (382)
T ss_pred             cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-------------cccCcccCCCCcHHHHHHHH
Confidence            78899999985     8888877665443211       123444 2             23577899999999999999


Q ss_pred             HcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          397 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       397 ~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                      .+.+. -++|+|  +|+++|+|++.+++.+|.+
T Consensus       352 ~~~~~-~~~v~~--~~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       352 HRTGG-AILLVE--NGRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             hcCCC-CeEEee--CCeEEEEEeHHHHHHHHhc
Confidence            98875 488998  4999999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.15  E-value=0.002  Score=61.17  Aligned_cols=164  Identities=18%  Similarity=0.285  Sum_probs=110.7

Q ss_pred             CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHH-----hhcccCCCCCcccCCcc
Q 014157          204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC-----RYFRHCSSSLPILKLPI  278 (429)
Q Consensus       204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~-----~~~~~~~~~~~~l~~~v  278 (429)
                      ..+.++.++-  .|.||+++     -+++.++    ++|   +++.+=|..+|+..-+     .++....        +.
T Consensus       214 l~KTIvFitH--DLdEAlri-----G~rIaim----kdG---~ivQ~Gtp~eIl~~PAndYV~~Fv~~v~--------~~  271 (386)
T COG4175         214 LKKTIVFITH--DLDEALRI-----GDRIAIM----KDG---EIVQVGTPEEILLNPANDYVRDFVRNVD--------RS  271 (386)
T ss_pred             hCCeEEEEec--CHHHHHhc-----cceEEEe----cCC---eEEEeCCHHHHHcCccHHHHHHHHhcCC--------hh
Confidence            3556666654  47777754     3568888    677   8999999999985332     2221110        00


Q ss_pred             ccccCcccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccccccc
Q 014157          279 CAIPVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSE  356 (429)
Q Consensus       279 ~~l~i~~~~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~  356 (429)
                      +-+       ++.++|.+  ....-.....-..++..+.....+.+.+++..++.+|+++..++....            
T Consensus       272 ~Vl-------tA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~------------  332 (386)
T COG4175         272 RVL-------TAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKAA------------  332 (386)
T ss_pred             hee-------eHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhccc------------
Confidence            001       22334542  111222223334677888888877888888778899999998876531            


Q ss_pred             ccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          357 MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       357 ~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                            +             ..++.++..++++.+.+..+.+... .++||| ++++++|+|++..++.+|.+
T Consensus       333 ------~-------------~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvd-e~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         333 ------L-------------IDDVLTVDADTPLSEILARIRQAPC-PVAVVD-EDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             ------c-------------cccccccCccchHHHHHHHHhcCCC-ceeEEc-CCCcEEEEecHHHHHHHHhc
Confidence                  1             2357788999999999998888775 588999 69999999999999999864

>cd02858 Esterase_N_term Esterase N-terminal domain

Probab=96.87  E-value=0.0013  Score=51.02  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=27.0

Q ss_pred             ccCCceeEEEEEECCeeeecCCCCcccCCCCCc
Q 014157            3 FYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIV   35 (429)
Q Consensus         3 ~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~   35 (429)
                      +|.+|.|+|+|.|||.|..||..|...=..+..
T Consensus        48 ~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~   80 (85)
T cd02858          48 PLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVD   80 (85)
T ss_pred             CCCCcEEEEEEEECCeEecCCCCCceeeccccc
Confidence            478899999999999999999998766333443

Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.86  E-value=0.015  Score=59.71  Aligned_cols=133  Identities=12%  Similarity=0.123  Sum_probs=93.0

Q ss_pred             CceecCCC-CcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCC---CCcccCCcccccc
Q 014157          207 PLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS---SLPILKLPICAIP  282 (429)
Q Consensus       207 ~~i~v~~~-~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~---~~~~l~~~v~~l~  282 (429)
                      +++.+..+ .++.|...+|.+...+..||+- ++++.   .++|.+..+++...+.........   .......+.....
T Consensus       557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl-~~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~  632 (696)
T KOG0475|consen  557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVL-SEDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV  632 (696)
T ss_pred             hheeccccceeHHHHHHHHhhcccCCceEEE-ccccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence            46666665 8999999999999999999985 34444   799999999998776532111000   0001122222111


Q ss_pred             Ccccc-cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          283 VGTWV-PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       283 i~~~~-~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                      -+.-. -..+++|...+.++...++...+++++++-+.+.+.|. ++|++.|+||.+|+++..
T Consensus       633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence            11111 12445677788999999999999999999999988776 589999999999998764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.40  E-value=0.11  Score=48.28  Aligned_cols=112  Identities=17%  Similarity=0.236  Sum_probs=72.3

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc--------c-ccccccccccHHHHHhcCC
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK--------A-YAHINLSEMTIHQALQLGQ  367 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~--------~-~~~l~l~~~~v~~~l~~~~  367 (429)
                      .++.++.|  +.||+++.     .++.|.+ +|+++-+-+..+|+...++.        . .....+...++.+.+....
T Consensus       188 TivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~  259 (309)
T COG1125         188 TIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGE  259 (309)
T ss_pred             EEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccc
Confidence            56777766  68888775     4688887 79999999988887432211        0 0001122334444443211


Q ss_pred             CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                      ..         .--.........+++..+...+...+|||| ++|+++|.||..+|+..
T Consensus       260 ~~---------~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd-~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         260 PA---------DGEPLLEGFVDRDALSDFLARGRSVLPVVD-EDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cc---------cCCccccchhhHHHHHHHHhcCCceeEEEC-CCCcEeeEEEHHHHhhh
Confidence            00         011123334445588888899999999999 59999999999999875

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.26  E-value=0.062  Score=56.50  Aligned_cols=59  Identities=10%  Similarity=0.186  Sum_probs=49.7

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF  264 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~  264 (429)
                      ++|.+++..+..+.|..|.-+.+..+.++.+|+++ +.++.   -++|.+..+.+...+.++.
T Consensus       592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~-s~esm---iLlGSV~R~~L~~ll~~~i  650 (931)
T KOG0476|consen  592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVE-SKESM---ILLGSVARRYLTALLQRHI  650 (931)
T ss_pred             eeccccceeeeccCcHHHHHHHHHhCccceecccc-Ccccc---eeeehhHHHHHHHHHHhhc
Confidence            46899999999999999977777766699999997 44555   7999999999999887654

>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies

Probab=94.74  E-value=0.025  Score=42.82  Aligned_cols=32  Identities=25%  Similarity=0.183  Sum_probs=24.5

Q ss_pred             ccCC-ceeEEEEEECCeeeecCCCCcccCCCCC
Q 014157            3 FYIV-HYVQYKFCVDGEWRHDEHQPFISSEYGI   34 (429)
Q Consensus         3 ~l~~-g~~~ykf~vdg~w~~~~~~~~~~~~~g~   34 (429)
                      +++. |.|.|+|.|||.|.+++.+|...+....
T Consensus        46 ~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~   78 (83)
T cd02688          46 PLPSPGKYQYKYVLDGGKGPDEGEPKADEGGSG   78 (83)
T ss_pred             cCCCCCCeEEEEEEeCCCCCCCCChhhhcCCcc
Confidence            4455 9999999999999999988555544333

These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.48  E-value=0.3  Score=45.46  Aligned_cols=120  Identities=14%  Similarity=0.164  Sum_probs=65.5

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCc-ccCCccccccCc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP-ILKLPICAIPVG  284 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~-~l~~~v~~l~i~  284 (429)
                      +.++.|+-  .+.||+++     ..++.|+    ..|   +++.+-++.+|++.-+..|-...-... .....+....+.
T Consensus       187 kTivfVTH--DidEA~kL-----adri~vm----~~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~  252 (309)
T COG1125         187 KTIVFVTH--DIDEALKL-----ADRIAVM----DAG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVA  252 (309)
T ss_pred             CEEEEEec--CHHHHHhh-----hceEEEe----cCC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHH
Confidence            34444443  35565544     2457777    356   899999999998755444322100000 000111111111


Q ss_pred             ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          285 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       285 ~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      ..+...   ....--.+.......+++..+...+.+.+||+|++|+++|.+|..+++.
T Consensus       253 ~~~~~~---~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         253 DAVRRG---EPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             Hhhccc---ccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            111000   0000111223334456777888889999999999999999999999875

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=92.56  E-value=0.23  Score=47.62  Aligned_cols=89  Identities=12%  Similarity=0.209  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCC
Q 014157          217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRR  296 (429)
Q Consensus       217 l~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~  296 (429)
                      -..++..+.+.....+.+++   ..+   +.+|+++..+..+.                                 .+..
T Consensus       295 ~~~al~~~~~~~~~~~~~~~---~~~---~~~g~v~~~~~~~~---------------------------------~~~~  335 (386)
T COG4175         295 PRVALKLLRDEGREYGYAVD---RGN---KFVGVVSIDSLVKA---------------------------------ALID  335 (386)
T ss_pred             cchhhhhhhhccchhhHHHh---ccC---ceeeEEeccchhcc---------------------------------cccc
Confidence            34556666666555555553   333   57777777776542                                 0223


Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                      .+.++..++++.+.+..+.+.. ..++|+|++++++|++++..++.++.
T Consensus       336 ~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         336 DVLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence            5677889999999988887655 47899999999999999999998664

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=88.13  E-value=1.1  Score=44.81  Aligned_cols=47  Identities=11%  Similarity=0.190  Sum_probs=40.1

Q ss_pred             CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          297 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       297 ~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                      ...++.+++++.+++..+.+.+. -++|+|+ |+++|+|++.+++..+.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence            46688999999999998887764 5888885 99999999999987653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	429
2v8q_E	330	Crystal Structure Of The Regulatory Fragment Of Mam		7e-31
3t4n_C	323	Structure Of The Regulatory Fragment Of Saccharomyc		6e-21
2qlv_C	315	Crystal Structure Of The Heterotrimer Core Of The S		9e-21
2oox_G	333	Crystal Structure Of The Adenylate Sensor From Amp-		3e-20
2qr1_G	334	Crystal Structure Of The Adenylate Sensor From Amp-		4e-20
2uv5_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		5e-08
2uv6_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		2e-07
2uv7_A	152	Crystal Structure Of A Cbs Domain Pair From The Reg		4e-07
2nyc_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		2e-06
2nye_A	144	Crystal Structure Of The Bateman2 Domain Of Yeast S		1e-05
1z0n_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		5e-05
1z0m_A	96	The Glycogen-Binding Domain Of The Amp-Activated Pr		5e-05
2f15_A	96	Glycogen-Binding Domain Of The Amp-Activated Protei		4e-04

>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian Ampk In Complexes With Amp Length = 330

Iteration: 1
 Score =  131 bits (330), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 159/336 (47%), Gaps = 47/336 (13%)
Query: 98  SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSAS 157
           + F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ +
Sbjct: 29  TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT 88
Query: 158 DFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 216
           DFI IL     + S L +  ELE H I  W+E   YL    DS      +PLV   PN +
Sbjct: 89  DFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCISPNAS 136
Query: 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 276
           L D    ++ N++  +P+I   S +      L+I +   ILK               LKL
Sbjct: 137 LFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK--------------FLKL 177
Query: 277 PICAIPVGTWVPKIGEP----NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLL 332
            I   P   ++ K  E         +AM+R                  ++P+VD+   ++
Sbjct: 178 FITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVV 237
Query: 333 DIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKV 392
           DIY + D+  LA +K Y ++++S   + +ALQ     +       +    C   +TL  +
Sbjct: 238 DIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHETLEAI 287
Query: 393 MERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           + RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 288 INRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322

>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces Cerevisiae Ampk In Complex With Adp Length = 323

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 44/353 (12%)
Query: 80  EAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISM 139
           ++ E++S  + Q++   +  FL++ T+Y++LP S +++ LD  L VK++ ++L +  I  
Sbjct: 7   DSQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVS 65
Query: 140 APLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN-RQI 197
           APLWD   +RF G+L+ +DFI +++    + SN  + EL +   +   K+ +  L   Q+
Sbjct: 66  APLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALGVDQL 122
Query: 198 DSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG-- 255
           D+      RPL  A           K+L +    +P+I    QD    + + ++ L+   
Sbjct: 123 DTASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVLTQYR 170
Query: 256 ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXX 315
           ILK V    R        LK+PI  + +      I + N +   M  P            
Sbjct: 171 ILKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVIQMLT 217
Query: 316 XXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 375
                S+PI+D+N  L+++Y   D+  L K   Y  ++LS   + +AL    D +     
Sbjct: 218 QGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF----- 269
Query: 376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
             +    C  +D L  +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 270 --EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319

>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S. Cerevisiae Ampk Homolog Snf1 Length = 315

Iteration: 1
 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 166/352 (47%), Gaps = 44/352 (12%)
Query: 81  AAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMA 140
           + E++S  + Q++   +  FL++ T+Y++LP S +++ LD  L VK++ ++L +  I  A
Sbjct: 1   SQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSA 59
Query: 141 PLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN-RQID 198
           PLWD   +RF G+L+ +DFI +++    + SN  + EL +   +   K+ +  L   Q+D
Sbjct: 60  PLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALGVDQLD 116
Query: 199 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG--I 256
           +      RPL  A           K+L +    +P+I    QD    + + ++ L+   I
Sbjct: 117 TASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVLTQYRI 164
Query: 257 LKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXX 316
           LK V    R        LK+PI  + +      I + N +   M  P             
Sbjct: 165 LKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVIQMLTQ 211
Query: 317 XXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 376
               S+PI+D+N  L+++Y   D+  L K   Y  ++LS   + +AL    D +      
Sbjct: 212 GRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF------ 262
Query: 377 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
            +    C  +D L  +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 263 -EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312

>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-activated Protein Kinase Complexed With Amp Length = 333

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 150/332 (45%), Gaps = 32/332 (9%)
Query: 97  VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 156
           +  F+ + T+Y++LP S +++  D+ L VK +  +L    I  APLWD    +F G+L+ 
Sbjct: 14  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 73
Query: 157 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 216
           +DF+ +++      S           I+   + +    R+++    A P   +Y  P  +
Sbjct: 74  ADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 126
Query: 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 276
           L D    +  +    +P+I    + GS   ++ + +   ILK +     +C  +  +L++
Sbjct: 127 LMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRV 181
Query: 277 PICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYC 336
           P+  + +GTW           LA                     ++PIV+   +LL++Y 
Sbjct: 182 PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 232
Query: 337 RSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 396
             D+  L +D  Y++++LS   + +AL     ++            C  +D L  + + +
Sbjct: 233 SVDVMHLIQDGDYSNLDLS---VGEALLKRPANFDG-------VHTCRATDRLDGIFDAI 282
Query: 397 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
            +  V RL +V+   K +EGI+SL+DI  +++
Sbjct: 283 KHSRVHRLFVVDENLK-LEGILSLADILNYII 313

>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-Activated Protein Kinase In Complex With Adp Length = 334

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 150/332 (45%), Gaps = 32/332 (9%)
Query: 97  VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 156
           +  F+ + T+Y++LP S +++  D+ L VK +  +L    I  APLWD    +F G+L+ 
Sbjct: 15  IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTM 74
Query: 157 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 216
           +DF+ +++      S           I+   + +    R+++    A P   +Y  P  +
Sbjct: 75  ADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHS 127
Query: 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL 276
           L D    +  +    +P+I    + GS   ++ + +   ILK +     +C  +  +L++
Sbjct: 128 LMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET-AMLRV 182
Query: 277 PICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSLLDIYC 336
           P+  + +GTW           LA                     ++PIV+   +LL++Y 
Sbjct: 183 PLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYE 233
Query: 337 RSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 396
             D+  L +D  Y++++LS   + +AL     ++            C  +D L  + + +
Sbjct: 234 SVDVMHLIQDGDYSNLDLS---VGEALLKRPANFDG-------VHTCRATDRLDGIFDAI 283
Query: 397 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
            +  V RL +V+   K +EGI+SL+DI  +++
Sbjct: 284 KHSRVHRLFVVDENLK-LEGILSLADILNYII 314

>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 321 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 380
           S+PI+D+N  L+++Y   D+  L K   Y  ++LS   + +AL    D +       +  
Sbjct: 44  SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF-------EGV 93
Query: 381 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
             C  +D L  +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 94  YTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4 Length = 144

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 321 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 380
           S+PI+D+N  L+++Y   D+  L K   Y  ++LS   + +AL    D +       +  
Sbjct: 44  SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALXRRSDDF-------EGV 93
Query: 381 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
             C  +D L  + + +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 94  YTCTKNDKLSTIXDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Length = 96

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 10 QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 46
          QYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct: 57 QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 93

>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta1 Subunit Length = 96

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 10 QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 46
          QYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct: 57 QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 93

>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein Kinase Beta2 Subunit Length = 96

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 10 QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 46
          QYKF VDG+W HD  +P ++S+ G +N ++   + +F
Sbjct: 57 QYKFFVDGQWVHDPSEPVVTSQLGTINNLIHVKKSDF 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	429
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	7e-79
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	9e-71
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-70
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-35
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	9e-06
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-05
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	5e-33
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	8e-05
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-30
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-09
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-21
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-05
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	5e-14
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	3e-12
1pvm_A	184	Conserved hypothetical protein TA0289; structural	6e-12
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-11
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-11
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-11
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	4e-10
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	6e-10
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	8e-10
1pbj_A	125	Hypothetical protein; structural genomics, domain,	1e-09
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-09
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-09
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	2e-09
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	4e-09
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	8e-04
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-08
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	2e-08
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	1e-04
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-08
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	6e-08
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	2e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-06
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-04
1vr9_A	213	CBS domain protein/ACT domain protein; structural	9e-07
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	1e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	2e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-05
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-06
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	8e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-05
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	2e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-05
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	4e-05

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score =  246 bits (630), Expect = 7e-79
 Identities = 74/343 (21%), Positives = 159/343 (46%), Gaps = 34/343 (9%)

Query: 87  EADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFS 146
           +   + +   +  F+ + T+Y++LP S +++  D+ L VK +  +L    I  APLWD  
Sbjct: 5   QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSE 64

Query: 147 KARFVGVLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFP 205
             +F G+L+ +DF+ +++      S      E++   +   +E        ++    A P
Sbjct: 65  ANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLRE--------VERKIGAIP 116

Query: 206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 265
              +Y  P  +L D    +  +    +P+I    + GS   ++ + +   ILK +    +
Sbjct: 117 PETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCK 175

Query: 266 HCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV 325
                  +L++P+  + +GTW           LA       +   + +L +  +S++PIV
Sbjct: 176 E----TAMLRVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIV 222

Query: 326 DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLP 385
           +   +LL++Y   D+  L +D  Y++++L   ++ +AL     ++            C  
Sbjct: 223 NSEGTLLNVYESVDVMHLIQDGDYSNLDL---SVGEALLKRPANFDG-------VHTCRA 272

Query: 386 SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           +D L  + + + +  V RL +V+  + ++EGI+SL+DI  +++
Sbjct: 273 TDRLDGIFDAIKHSRVHRLFVVDE-NLKLEGILSLADILNYII 314

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score =  225 bits (574), Expect = 9e-71
 Identities = 81/350 (23%), Positives = 161/350 (46%), Gaps = 35/350 (10%)

Query: 79  TEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGIS 138
           T+ ++     + Q++   +  FL++ T+Y++LP S +++ LD  L VK++ ++L +  I 
Sbjct: 5   TQDSQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIV 64

Query: 139 MAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQID 198
            APLWD   +RF G+L+ +DFI +++   ++      E ++   +   K+ +  L     
Sbjct: 65  SAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKF--ELVDKLQLDGLKDIERALGVD-- 120

Query: 199 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 258
                         P+  L +   K+L +    +P+I     +     ++ + +   ILK
Sbjct: 121 ------QLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDE-ETHREIVVSVLTQYRILK 173

Query: 259 CVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQ 318
            V    R        LK+PI  + + T            +   + +  +   + +L Q +
Sbjct: 174 FVALNCRET----HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGR 220

Query: 319 VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQ 378
           VSS+PI+D+N  L+++Y   D+  L K   Y  ++L   ++ +AL    D +        
Sbjct: 221 VSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSDDFEG------ 271

Query: 379 RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
               C  +D L  +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 272 -VYTCTKNDKLSTIMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 319

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score =  225 bits (574), Expect = 1e-70
 Identities = 102/356 (28%), Positives = 169/356 (47%), Gaps = 37/356 (10%)

Query: 73  ISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHIL 132
           ++  S        S+   + +    + F+ +H  Y+L+P S K+V  D  L VK+AF  L
Sbjct: 4   VAAESAPAPENEHSQETPESNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFAL 63

Query: 133 YEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAY 192
              G+  APLWD  K  FVG+L+ +DFI IL       + +   ELE H I  W+E    
Sbjct: 64  VTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKS-ALVQIYELEEHKIETWREVY-- 120

Query: 193 LNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIAS 252
                    +   +PLV   PN +L D    ++ N++  +P+I   S +      L+I +
Sbjct: 121 --------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGN-----TLYILT 167

Query: 253 LSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALN 312
              ILK +  +          +   +  + +GT+           +AM+R +  +  AL 
Sbjct: 168 HKRILKFLKLFITEFPKP-EFMSKSLEELQIGTY---------ANIAMVRTTTPVYVALG 217

Query: 313 LLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSP 372
           + VQ +VS++P+VD+   ++DIY + D+  LA +K Y   N  ++++ +ALQ     +  
Sbjct: 218 IFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTY---NNLDVSVTKALQHRSHYFEG 274

Query: 373 YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
                     C   +TL  ++ RL    V RLV+V+     V+GIVSLSDI + L+
Sbjct: 275 -------VLKCYLHETLEAIINRLVEAEVHRLVVVDE-HDVVKGIVSLSDILQALV 322

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score =  120 bits (303), Expect = 5e-33
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 20/157 (12%)

Query: 272 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL 331
             LK+PI  + + T            +   + +  +   + +L Q +VSS+PI+D+N  L
Sbjct: 4   HFLKIPIGDLNIITQ---------DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYL 54

Query: 332 LDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHK 391
           +++Y   D+  L K   Y  ++L   ++ +AL    D +            C  +D L  
Sbjct: 55  INVYEAYDVLGLIKGGIYNDLSL---SVGEALMRRSDDFEG-------VYTCTKNDKLST 104

Query: 392 VMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           +M+ +    V R  +V+    R+ G+++LSDI K++L
Sbjct: 105 IMDNIRKARVHRFFVVDD-VGRLVGVLTLSDILKYIL 140

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 41.4 bits (98), Expect = 8e-05
 Identities = 16/120 (13%), Positives = 37/120 (30%), Gaps = 20/120 (16%)

Query: 116 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE 175
           + +  +  PV     +L +  +S  P+ D      + V  A D + +++    +  +L+ 
Sbjct: 21  MKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIKGGIYNDLSLSV 79

Query: 176 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 235
            E        ++                    +     ND L  +   I    V    ++
Sbjct: 80  GEALMRRSDDFE-------------------GVYTCTKNDKLSTIMDNIRKARVHRFFVV 120

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score =  116 bits (291), Expect = 7e-30
 Identities = 39/315 (12%), Positives = 105/315 (33%), Gaps = 46/315 (14%)

Query: 113 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 172
           + K+V +     +++A   + E      P+ +    + VG++++ D +  +     +   
Sbjct: 11  NKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLI 70

Query: 173 LTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATV 232
             + E                 R+I          ++    N ++ +     L   V   
Sbjct: 71  REKHERNFLAAINEPV------REIME------ENVITLKENADIDEAIETFLTKNVGGA 118

Query: 233 PIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGE 292
           PI+   + +    QL+ + +   +++ +                             I +
Sbjct: 119 PIV---NDEN---QLISLITERDVIRALLDKIDE--------------------NEVIDD 152

Query: 293 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI 352
              R + +  P   L      +V+     +P+V +   L+ I   +D   L       + 
Sbjct: 153 YITRDVIVATPGERLKDVARTMVRNGFRRLPVVSEGR-LVGIITSTDFIKLLGSDWAFN- 210

Query: 353 NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 412
           ++    + +   +  +     ++ +         D L K+ E +    +  L +V+   +
Sbjct: 211 HMQTGNVREITNVRMEEIMKRDVIT-----AKEGDKLKKIAEIMVTNDIGALPVVDENLR 265

Query: 413 RVEGIVSLSDIFKFL 427
            ++GI++  D+ K+ 
Sbjct: 266 -IKGIITEKDVLKYF 279

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 20/143 (13%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAK 345
           V  +     + +  + P+ ++  AL  + + +   +P+V+  N+ ++ I    DI     
Sbjct: 3   VRVMKIAQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDI---VD 59

Query: 346 DKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV 405
                         H+   L   +    E+  +       +  + + +E      V    
Sbjct: 60  FMGGGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAP 119

Query: 406 IVEAGSKRVEGIVSLSDIFKFLL 428
           IV   ++ +  +++  D+ + LL
Sbjct: 120 IVNDENQ-LISLITERDVIRALL 141

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 93.7 bits (233), Expect = 1e-21
 Identities = 33/317 (10%), Positives = 92/317 (29%), Gaps = 62/317 (19%)

Query: 113 SGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSN 172
                 L  +  +  AF  + E GI    + +    +  G+L+  D +  +        +
Sbjct: 27  IKNPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCS 83

Query: 173 LTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVAT 231
             +   + T  I  +                      V      +       ++     +
Sbjct: 84  QGDLYHISTTPIIDYMT-----------------PNPVTVYNTSDEFTAINIMVTRNFGS 126

Query: 232 VPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIG 291
           +P++  + +       + I +    L                        PV  ++    
Sbjct: 127 LPVVDINDK------PVGIVTEREFLLLYKDLDEI--------------FPVKVFM---- 162

Query: 292 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYA 350
                 +  +     L  A+ L+++     +P++DD++ ++ I    +    LAK     
Sbjct: 163 ---STKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKL 219

Query: 351 HINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 410
             +     + + +       +                ++++    +    +  L+I+   
Sbjct: 220 DPDYFYGKVVKDV----MVTNLV--------TIDELASVNRAAAEMIVKRIGSLLILNKD 267

Query: 411 SKRVEGIVSLSDIFKFL 427
           +  + GI++  D+   L
Sbjct: 268 NT-IRGIITERDLLIAL 283

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 17/151 (11%), Positives = 49/151 (32%), Gaps = 26/151 (17%)

Query: 85  ISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWD 144
           ++E +                    +  S KV  +  ++ + QA  ++  +G    P+ D
Sbjct: 140 VTEREF---LLLYKDLDEIFPVKVFM--STKVQTIYKEVRLDQAVKLMLRRGFRRLPVID 194

Query: 145 FSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAF 204
               + VG+++  +    +++L      L  +      +             +       
Sbjct: 195 -DDNKVVGIVTVVN---AIKQLAKAVDKLDPDYFYGKVVKD-----------VMV----- 234

Query: 205 PRPLVYAGPNDNLKDVARKILHNEVATVPII 235
              LV      ++   A +++   + ++ I+
Sbjct: 235 -TNLVTIDELASVNRAAAEMIVKRIGSLLIL 264

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 67.6 bits (166), Expect = 5e-14
 Identities = 23/135 (17%), Positives = 48/135 (35%), Gaps = 24/135 (17%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKDKAYAHIN 353
             +  +    +L+AA   + +  + ++PI  D+D L  +    DI    LA         
Sbjct: 16  AGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTAT 75

Query: 354 LSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 412
             E                              + ++ +++  +    VRR+ ++     
Sbjct: 76  AGELAR-------------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH-- 114

Query: 413 RVEGIVSLSDIFKFL 427
           R+ GIV+ +DI + L
Sbjct: 115 RLVGIVTEADIARHL 129

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana} Length = 294

 Score = 65.9 bits (160), Expect = 3e-12
 Identities = 25/101 (24%), Positives = 36/101 (35%), Gaps = 27/101 (26%)

Query: 10  QYKFCVDGEWRHDEHQPFISS-EYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQ 68
           +YK+ +DGEW H+E +PFI   + G  N                         VD    +
Sbjct: 220 EYKYIIDGEWTHNEAEPFIGPNKDGHTNNYA--------------KVVDDPTSVDGTTRE 265

Query: 69  RLVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYEL 109
           RL    D  L E             R ++  FL T +  E+
Sbjct: 266 RLSS-EDPELLE-----------EERSKLIQFLETCSEAEV 294

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 23/135 (17%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKDKAYAHIN 353
                +  + ++  A+ ++ +  +  + + DDN + + +     I    + ++K    + 
Sbjct: 17  SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVP 76

Query: 354 LSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 412
           +   M                    +          +  V   L+  G+ R  +V+    
Sbjct: 77  IRLVMR-------------------KPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPG 116

Query: 413 RVEGIVSLSDIFKFL 427
           RV GIV+L+D+ ++L
Sbjct: 117 RVVGIVTLTDLSRYL 131

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 60.7 bits (148), Expect = 2e-11
 Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 23/136 (16%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHIN 353
            + L  ++PS S+  A  L+++  V S+ +++D+ +++  + +SDI   +        I 
Sbjct: 14  TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIP 73

Query: 354 LSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK 412
           +   MT                L +        +  L +V+ ++A   ++ ++I E G  
Sbjct: 74  VERIMT--------------RNLIT-----ANVNTPLGEVLRKMAEHRIKHILIEEEG-- 112

Query: 413 RVEGIVSLSDIFKFLL 428
           ++ GI +LSD+ +   
Sbjct: 113 KIVGIFTLSDLLEASR 128

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 21/132 (15%)

Query: 301 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSE-MT 358
           +  + S+  A+  +    V ++ +VD +  L+ +  R D+  A    +    + +   MT
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMT 88

Query: 359 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK--RVEG 416
                            R     +C   D +  + + L    +  L +++   K   V G
Sbjct: 89  -----------------RMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIG 131

Query: 417 IVSLSDIFKFLL 428
            V+ +++ K L+
Sbjct: 132 RVTKTNMTKILV 143

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 11/144 (7%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 354
           R+ L +++PS S+  AL LLV+ +V+ +P++DDN +L+ +    D+ AL      +  + 
Sbjct: 13  RQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDT 72

Query: 355 SEMTIHQALQLGQDSYSPYELRSQRCQ----M------CLPSDTLHKVMERLANPGVRRL 404
           +      +     +       ++        M         S  L      L     RRL
Sbjct: 73  NLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRL 132

Query: 405 VIVEAGSKRVEGIVSLSDIFKFLL 428
            +V+    ++ GI++  ++ +  L
Sbjct: 133 PVVD-ADGKLIGILTRGNVVRAAL 155

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 47.0 bits (112), Expect = 2e-06
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 2/135 (1%)

Query: 102 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFIL 161
           + +T  + +     +  +     V  A  +L E+ ++  P+ D      VGV+S  D + 
Sbjct: 2   TGYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVID-DNWTLVGVVSDYDLLA 60

Query: 162 ILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSH-GKAFPRPLVYAGPNDNLKDV 220
           +    G   ++         T   + E +  +++      G       +    + NL+D 
Sbjct: 61  LDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDA 120

Query: 221 ARKILHNEVATVPII 235
           AR +L  +   +P++
Sbjct: 121 ARLLLETKFRRLPVV 135

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 11/134 (8%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS--LLDIYCRSDITALAKDKAYAHIN 353
             +  L     L   + ++    V+  P+V+  +S  L+ I  R+ +    + +  +   
Sbjct: 21  HSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAP 80

Query: 354 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 413
             +  +   L  G  +                  TLH+         ++ L +   G  R
Sbjct: 81  GHQQCLQDILARGCPT-------EPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG--R 131

Query: 414 VEGIVSLSDIFKFL 427
             G VS  ++ K +
Sbjct: 132 AVGCVSWVEMKKAI 145

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.9 bits (138), Expect = 6e-10
 Identities = 27/145 (18%), Positives = 56/145 (38%), Gaps = 24/145 (16%)

Query: 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALA 344
           V  + +   R +  + P  S+  A   L   ++ ++ + D +  +L I+   D+      
Sbjct: 26  VKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG 85

Query: 345 KDKAYAHINLSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRR 403
           +  A    ++S  MT                +       C  + T  ++ME +     R 
Sbjct: 86  QGAASLQQSVSVAMT--------------KNVVR-----CQHNSTTDQLMEIMTGGRFRH 126

Query: 404 LVIVEAGSKRVEGIVSLSDIFKFLL 428
           + + E G  R+ GI+S+ D+ K  +
Sbjct: 127 VPVEENG--RLAGIISIGDVVKARI 149

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 56.1 bits (136), Expect = 8e-10
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 24/144 (16%)

Query: 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKD 346
           +  E  +RP   L  +A++      L + +V    +   D+    + +    DI      
Sbjct: 6   RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQ 65

Query: 347 KAYAHINLSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV 405
           +                        SP           L +D +H   E++    +R +V
Sbjct: 66  RLDLDGPAMPIAN------------SPI--------TVLDTDPVHVAAEKMRRHNIRHVV 105

Query: 406 IVEAGSKRVEGIVSLSDIFKFLLG 429
           +V   +  + G++S+ D+      
Sbjct: 106 VVN-KNGELVGVLSIRDLCFERAI 128

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 54.8 bits (133), Expect = 1e-09
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 34/141 (24%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINL 354
             +  +  +ASL   L   V+    S  +V +    + I    D+  A+A+    A + +
Sbjct: 9   TDVDTIDITASLEDVLRNYVENAKGSSVVVKEGV-RVGIVTTWDVLEAIAEGDDLAEVKV 67

Query: 355 SE-M-----TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE 408
            E M     TI                         P  T+ +  E++    V RL++ E
Sbjct: 68  WEVMERDLVTIS------------------------PRATIKEAAEKMVKNVVWRLLVEE 103

Query: 409 AGSKRVEGIVSLSDIFKFLLG 429
                + G++S +DI +  + 
Sbjct: 104 DD--EIIGVISATDILRAKMA 122

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 22/143 (15%), Positives = 59/143 (41%), Gaps = 25/143 (17%)

Query: 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALAKD 346
           K    + R +  +  +  +  A+ L+ +  + ++ +VD +D +  I    D     + ++
Sbjct: 14  KAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD-IAGIVTERDYARKVVLQE 72

Query: 347 KAYAHINLSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV 405
           ++     + E MT                    + +   PS +  + M  +    +R L 
Sbjct: 73  RSSKATRVEEIMT-------------------AKVRYVEPSQSTDECMALMTEHRMRHLP 113

Query: 406 IVEAGSKRVEGIVSLSDIFKFLL 428
           +++ G  ++ G++S+ D+ K ++
Sbjct: 114 VLDGG--KLIGLISIGDLVKSVI 134

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 22/133 (16%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 355
             +  +   A L+    ++ +  + S+ +VD  +  + I    DI               
Sbjct: 12  TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGKSLETKAE 70

Query: 356 E-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 414
           E MT                L +           +   +  +    +R L +V+     +
Sbjct: 71  EFMT--------------ASLIT-----IREDSPITGALALMRQFNIRHLPVVD-DKGNL 110

Query: 415 EGIVSLSDIFKFL 427
           +GI+S+ DI + +
Sbjct: 111 KGIISIRDITRAI 123

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 54.5 bits (132), Expect = 2e-09
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 25/145 (17%)

Query: 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT--ALA 344
           V  + +     +  + P  S+  A+  +    + ++ ++ D + L+ I    D +  +  
Sbjct: 8   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD-EKLVGILTERDFSRKSYL 66

Query: 345 KDKAYAHINLSE-MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRR 403
            DK      + E MT                   ++      ++T    M  +    VR 
Sbjct: 67  LDKPVKDTQVKEIMT-------------------RQVAYVDLNNTNEDCMALITEMRVRH 107

Query: 404 LVIVEAGSKRVEGIVSLSDIFKFLL 428
           L +++ G  +V G++S+ D+ K  +
Sbjct: 108 LPVLDDG--KVIGLLSIGDLVKDAI 130

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 14/139 (10%), Positives = 49/139 (35%), Gaps = 14/139 (10%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 355
               ++     +   ++ +++  V+    V  ++ L+ +     +  ++    +  I   
Sbjct: 24  LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKE 83

Query: 356 EMTIHQALQLGQDSYSPYELRSQRCQM-----CLPSDTLHKVMERLANPGVRRLVIVEAG 410
           E+      +L   + S  E+      M           L + ++ + +  ++ + +V+  
Sbjct: 84  ELIRSSMKRLIAKNAS--EI------MLDPVYVHMDTPLEEALKLMIDNNIQEMPVVD-E 134

Query: 411 SKRVEGIVSLSDIFKFLLG 429
              + G ++  +I   L  
Sbjct: 135 KGEIVGDLNSLEILLALWK 153

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 38.8 bits (91), Expect = 8e-04
 Identities = 17/121 (14%), Positives = 45/121 (37%), Gaps = 13/121 (10%)

Query: 115 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 174
           K   ++ D P+++    + E  ++          + VG++      L+     +    + 
Sbjct: 25  KPTVVEEDTPIEEIVDRILEDPVTRTVYVA-RDNKLVGMIPVMH--LLKVSGFHFFGFIP 81

Query: 175 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 234
           +EEL   ++       A    +I           VY   +  L++  + ++ N +  +P+
Sbjct: 82  KEELIRSSMKRLIAKNA---SEIMLD-------PVYVHMDTPLEEALKLMIDNNIQEMPV 131

Query: 235 I 235
           +
Sbjct: 132 V 132

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 301 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH 360
           L  + +L+ A +L+    +  +PIVD N  LL I  + D+ A  +           +   
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFE 77

Query: 361 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 420
             L          E+         P   L +    +    +  L +V      + GI++ 
Sbjct: 78  TPLF---------EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD--VLVGIITD 126

Query: 421 SDIFKFLL 428
           SD     +
Sbjct: 127 SDFVTIAI 134

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 20/133 (15%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 354
                +     S + A   L  +  +  P++D     L +   S +    K        L
Sbjct: 12  ETDYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTVKEKL 70

Query: 355 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 414
            E  +                         P + L   +  +A      + + +    R 
Sbjct: 71  GEELLETVRSYR------------------PGEQLFDNLISVAAAKCSVVPLADE-DGRY 111

Query: 415 EGIVSLSDIFKFL 427
           EG+VS   I  FL
Sbjct: 112 EGVVSRKRILGFL 124

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 29/120 (24%)

Query: 116 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE 175
                +      A   L   G + AP+ D    R++G++  S  +   +        L E
Sbjct: 15  YPVFTLGGSTADAARRLAASGCACAPVLD--GERYLGMVHLSRLLEGRKGWPTVKEKLGE 72

Query: 176 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 235
                                           +    P + L D    +   + + VP+ 
Sbjct: 73  ---------------------------ELLETVRSYRPGEQLFDNLISVAAAKCSVVPLA 105

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 24/145 (16%), Positives = 60/145 (41%), Gaps = 37/145 (25%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHINL 354
           + +   +    +  A   +++ ++SS+P++DD + ++ I   +DI   L +DK      +
Sbjct: 16  KNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTI 75

Query: 355 SE-M-----TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPG-----VRR 403
            + M     TIH                           ++ + ++++   G     + +
Sbjct: 76  GDVMTKDVITIH------------------------EDASILEAIKKMDISGKKEEIINQ 111

Query: 404 LVIVEAGSKRVEGIVSLSDIFKFLL 428
           L +V+  + ++ GI+S  DI + + 
Sbjct: 112 LPVVD-KNNKLVGIISDGDIIRTIS 135

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 50.2 bits (121), Expect = 6e-08
 Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 34/135 (25%)

Query: 301 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEM--- 357
              + S+  A  +L++  ++ +PIVD++  L+ I    DI             + E+   
Sbjct: 14  AHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN---KKTIEEIMTR 70

Query: 358 ---TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 414
              T H                          + +  V  +++   +  + +V+   +RV
Sbjct: 71  NVITAH------------------------EDEPVDHVAIKMSKYNISGVPVVD-DYRRV 105

Query: 415 EGIVSLSDIFKFLLG 429
            GIV+  DI +   G
Sbjct: 106 VGIVTSEDISRLFGG 120

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A Length = 96

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 10 QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 46
          QYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct: 57 QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 93

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 17/130 (13%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 355
           R + +++ + +L  A  L+++     + +VD     + I    DI      K+  +  + 
Sbjct: 68  RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVE 127

Query: 356 EMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 415
                                 +   +      L   ++ L       L +V++    + 
Sbjct: 128 IE----------------PYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGN-LV 170

Query: 416 GIVSLSDIFK 425
           GIV  +D+ +
Sbjct: 171 GIVDETDLLR 180

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 24/128 (18%)

Query: 301 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH 360
           +   A+ + AL L  + +V S P+V+    L+ I     I  +  D+      L+ +   
Sbjct: 14  ITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRI-LVNPDEE----QLAMLVKR 68

Query: 361 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 420
               + ++                  DTL K  + +     RR+V+V+    +  GI+++
Sbjct: 69  DVPVVKEN------------------DTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTV 109

Query: 421 SDIFKFLL 428
            DI +   
Sbjct: 110 GDIIRRYF 117

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 34/253 (13%), Positives = 72/253 (28%), Gaps = 58/253 (22%)

Query: 115 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 174
            V  +  +  +K+A  ++ E       + D SK + VG+L+  D I            + 
Sbjct: 69  DVPVVKENDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTVGDIIRRYFAKSEKYKGVE 127

Query: 175 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 234
            E                             R +        LK   + +L +    +P+
Sbjct: 128 IEPYYQ-------------------------RYVSIVWEGTPLKAALKALLLSNSMALPV 162

Query: 235 IHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 294
           +     +G      +   L GI+       R       +    + A     W+ +     
Sbjct: 163 V---DSEG------N---LVGIVDET-DLLRDSEIVRIMKSTELAASSEEEWILESHPTL 209

Query: 295 R------------------RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 336
                              R + +  P  ++      + +  +  +P++     L+ +  
Sbjct: 210 LFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIR 269

Query: 337 RSDIT-ALAKDKA 348
             D+   L K KA
Sbjct: 270 DFDLLKVLVKSKA 282

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 47/328 (14%), Positives = 105/328 (32%), Gaps = 75/328 (22%)

Query: 116 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE 175
            V + +      A  +  +  +   P+ +    + VG++S      IL            
Sbjct: 11  PVTITLPATRNYALELFKKYKVRSFPVVNKEG-KLVGIISVKR---ILVNP----DEEQL 62

Query: 176 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 235
             L                           R +     ND LK  A+ +L  +   V ++
Sbjct: 63  AMLVK-------------------------RDVPVVKENDTLKKAAKLMLEYDYRRVVVV 97

Query: 236 HSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 295
                D    + + I ++  I++                         G  +       +
Sbjct: 98  -----DSKG-KPVGILTVGDIIRRY---------------FAKSEKYKGVEIEPYY---Q 133

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 355
           R ++++     L AAL  L+ +   ++P+VD   +L+ I   +D+  L   +    +  +
Sbjct: 134 RYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDL--LRDSEIVRIMKST 191

Query: 356 EMTIHQALQLGQDSYSPYELRSQRCQMCL---------------PSDTLHKVMERLANPG 400
           E+      +   +S+          Q+                 P  T+H+V  ++A   
Sbjct: 192 ELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYS 251

Query: 401 VRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           + +L ++      + G++   D+ K L+
Sbjct: 252 IEQLPVIRGEGDLI-GLIRDFDLLKVLV 278

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 24/128 (18%)

Query: 301 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH 360
           +  SA++   L+ + Q Q +   + D       +  + D+  L  D +  +     +++ 
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNK----VSLP 81

Query: 361 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 420
                                     D +   +          L +V+    R++G VSL
Sbjct: 82  D-------------------FFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSL 121

Query: 421 SDIFKFLL 428
            D  + L+
Sbjct: 122 HDFLEALI 129

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 11/137 (8%)

Query: 300 MLRPSASLSAALNLLVQAQVSSIPIVDDNDS--LLDIYCRSDITALAKDKAYAHINLSEM 357
           + + S ++     ++ +   S  P+V   +S  L+    R D+    ++       +   
Sbjct: 29  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 88

Query: 358 TIH--QALQLGQDSYSPYELR-----SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 410
           +I            Y+P  L+                 +  V++     G+R+ ++   G
Sbjct: 89  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 148

Query: 411 SKRVEGIVSLSDIFKFL 427
             R+ GI++  D+ K +
Sbjct: 149 --RLLGIITKKDVLKHI 163

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 30/151 (19%)

Query: 115 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 174
           KV  + I   ++ A  +L + G S  P+ D    +  G++S +    IL  +      + 
Sbjct: 26  KVAHVQIGNGLEHALLVLVKSGYSAIPVLD-PMYKLHGLISTAM---ILDGILGL-ERIE 80

Query: 175 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 234
            E LE   +      +  + + I                 D+        + +    +  
Sbjct: 81  FERLEEMKV------EQVMKQDI-----------PVLKLEDSFAKALEMTIDHPF--ICA 121

Query: 235 IHSSSQDGSFPQLLHIASLSGILKCVCRYFR 265
           +   ++DG       I +   ILK + +  R
Sbjct: 122 V---NEDG---YFEGILTRRAILKLLNKKVR 146

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 25/134 (18%), Positives = 48/134 (35%), Gaps = 17/134 (12%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHIN 353
              +A ++    L  AL +LV++  S+IP++D    L  +   + I   +   +      
Sbjct: 24  SEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFER 83

Query: 354 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 413
           L EM +              ++  Q   +    D+  K +E   +      +        
Sbjct: 84  LEEMKVE-------------QVMKQDIPVLKLEDSFAKALEMTID---HPFICAVNEDGY 127

Query: 414 VEGIVSLSDIFKFL 427
            EGI++   I K L
Sbjct: 128 FEGILTRRAILKLL 141

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 24/134 (17%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHIN 353
              +A ++   +L  AL +L +   ++IP++D +  L  +   + I  ++   +      
Sbjct: 23  ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEK 82

Query: 354 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 413
           L ++T+              E+          +D + K    + N      V VE   + 
Sbjct: 83  LDQITVE-------------EVMLTDIPRLHINDPIMKGFGMVIN---NGFVCVENDEQV 126

Query: 414 VEGIVSLSDIFKFL 427
            EGI +   + K L
Sbjct: 127 FEGIFTRRVVLKEL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 24/121 (19%)

Query: 115 KVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLT 174
           KV  + +   ++ A  +L + G +  P+ D    R  G++  +    I+  +      + 
Sbjct: 25  KVAHVQVGNNLEHALLVLTKTGYTAIPVLD-PSYRLHGLIGTNM---IMNSIFGL-ERIE 79

Query: 175 EEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPI 234
            E+L+  T+      +  +              +     ND +      +++N    V +
Sbjct: 80  FEKLDQITV------EEVML-----------TDIPRLHINDPIMKGFGMVINNGF--VCV 120

Query: 235 I 235
            
Sbjct: 121 E 121

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 17/134 (12%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHIN 353
              +A ++P   L  AL +L +   S+IP++D +  L  +   + +  A+   +      
Sbjct: 20  ADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFER 79

Query: 354 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 413
           L  M +              E+ ++        D+L K +  + N      V VE     
Sbjct: 80  LETMKV-------------EEVMNRNIPRLRLDDSLMKAVGLIVN---HPFVCVENDDGY 123

Query: 414 VEGIVSLSDIFKFL 427
             GI +  ++ K L
Sbjct: 124 FAGIFTRREVLKQL 137

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 24/128 (18%)

Query: 108 ELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELG 167
             L  + KV  +     +  A  +L + G S  P+ D +  +  G++S +    ++  + 
Sbjct: 15  PFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLD-TSYKLHGLISMTM---MMDAIL 70

Query: 168 NHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN 227
                +  E LET  +      +  +N           R +     +D+L      I+++
Sbjct: 71  GL-ERIEFERLETMKV------EEVMN-----------RNIPRLRLDDSLMKAVGLIVNH 112

Query: 228 EVATVPII 235
               V + 
Sbjct: 113 PF--VCVE 118

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1 Length = 252

 Score = 43.9 bits (102), Expect = 4e-05
 Identities = 18/103 (17%), Positives = 28/103 (27%), Gaps = 8/103 (7%)

Query: 10  QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQR 69
           +++F VD E R  +  P  + + G           N++          +      EA   
Sbjct: 54  RFRFIVDNELRVSDFLPTATDQMGNFV--------NYIEVRQPEKNPTNEKIRSKEADSM 105

Query: 70  LVQISDGSLTEAAERISEADLQVSRHRVSVFLSTHTAYELLPE 112
               SD S           D      R    LS     E   +
Sbjct: 106 RPPTSDRSSIALQIGKDPDDFGDGYTRFHEDLSPRPPLEYTTD 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	429
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	100.0
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	100.0
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	100.0
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	100.0
3ddj_A	296	CBS domain-containing protein; structural genomics	99.97
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.96
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.9
3ddj_A	296	CBS domain-containing protein; structural genomics	99.88
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.87
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.84
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.83
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.82
4esy_A	170	CBS domain containing membrane protein; structural	99.8
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.76
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.76
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.76
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.75
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.75
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.74
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.74
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.74
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.73
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.72
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.72
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.72
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.72
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.72
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.72
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.71
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.71
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.71
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.71
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.71
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.71
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.71
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.7
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.7
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.7
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.7
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.7
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.7
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.69
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.69
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.69
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.68
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.68
4esy_A	170	CBS domain containing membrane protein; structural	99.68
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.68
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.67
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.67
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.67
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.66
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.66
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.65
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.65
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.63
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.63
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.63
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.63
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.63
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.6
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.6
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.6
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.58
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.58
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.58
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.58
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.58
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.57
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.57
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.57
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.57
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.56
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.56
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.56
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.56
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.56
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.56
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.55
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.55
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.55
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.55
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.55
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.54
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.54
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.53
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.53
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.53
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.53
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.52
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.52
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.52
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.51
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.51
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.51
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.5
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.5
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.5
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.5
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.49
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.48
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.47
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.45
1z0n_A	96	5'-AMP-activated protein kinase, beta-1 subunit; b	99.45
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.41
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.41
2qlv_B	252	Protein SIP2, protein SPM2; heterotrimer, ATP-bind	99.35
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.34
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.33
3nme_A	294	Ptpkis1 protein, SEX4 glucan phosphatase; dual spe	99.32
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.31
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.29
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.29
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.28
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.27
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.19
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.18
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.16
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.11
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.1
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.07
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.06
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.06
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.01
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.98
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.85
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.82
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.74
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.72
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.55
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.5
4aee_A	696	Alpha amylase, catalytic region; hydrolase, hypert	98.2
4aef_A	645	Neopullulanase (alpha-amylase II); hydrolase, ther	96.93
2z0b_A	131	GDE5, KIAA1434, putative glycerophosphodiester pho	92.79
3c8d_A	403	Enterochelin esterase; alpha-beta-alpha sandwich,	81.73

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=100.00  E-value=3.2e-40  Score=321.08  Aligned_cols=310  Identities=25%  Similarity=0.437  Sum_probs=248.1

Q ss_pred             cchHHHHHHHHHHHHHhhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHH
Q 014157           85 ISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILR  164 (429)
Q Consensus        85 ~~~~~~~~~~~~~~~fl~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~  164 (429)
                      ..+.+.....+++.+||++++|||+||.+.++++++.+.|+.+|++.|.+++++++||||++.++++|++|..|++.++.
T Consensus        11 ~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~~l~   90 (323)
T 3t4n_C           11 KVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQ   90 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHHHHH
Confidence            34566677889999999999999999999999999999999999999999999999999988789999999999999887


Q ss_pred             HHhcCCCCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCC
Q 014157          165 ELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSF  244 (429)
Q Consensus       165 ~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~  244 (429)
                      .++..+..  .+.++.+....|++.....        ..|.++++++.+++++.+|++.|.+++++++||++.+...+ .
T Consensus        91 ~~~~~~~~--~~~l~~~~~~~v~~i~~~~--------~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~-~  159 (323)
T 3t4n_C           91 YYFSNPDK--FELVDKLQLDGLKDIERAL--------GVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETH-R  159 (323)
T ss_dssp             HHHHCGGG--GGGGGGCBHHHHHHHHHHT--------TC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTC-C
T ss_pred             HHHcCcch--hHHHHHHHHHHHHHHHHHh--------CCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCC-c
Confidence            66543322  2455555556666544322        25788999999999999999999999999999997432222 1


Q ss_pred             CeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEE
Q 014157          245 PQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPI  324 (429)
Q Consensus       245 ~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV  324 (429)
                      ++++|++|.+|+++++..+...    ......+++++.++         |.++++++.+++++.+|++.|.+++++++||
T Consensus       160 ~~l~Givt~~di~~~l~~~~~~----~~~~~~~v~~~~~~---------m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pV  226 (323)
T 3t4n_C          160 EIVVSVLTQYRILKFVALNCRE----THFLKIPIGDLNII---------TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPI  226 (323)
T ss_dssp             EEEEEEEEHHHHHHHHHHHCGG----GGGCCSBGGGTTCS---------BCTTCCCBCTTSBHHHHHHHHHHHTCSEEEE
T ss_pred             cceEEEecHHHHHHHHHhcCCc----hhhhhCcHHHcCCC---------CCCCcEEECCCCcHHHHHHHHHHcCCCEEEE
Confidence            1399999999999998766433    12333444444221         5568899999999999999999999999999


Q ss_pred             ECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEE
Q 014157          325 VDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRL  404 (429)
Q Consensus       325 vd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l  404 (429)
                      +|++|+++|++|.+|+++....+.+..   ...++.++|.....       ...++++|.+++++.+|+++|.+++++++
T Consensus       227 vd~~~~~~Giit~~dl~~~~~~~~~~~---~~~~v~~~m~~~~~-------~~~~~~~v~~~~~l~~~~~~m~~~~~~~l  296 (323)
T 3t4n_C          227 IDENGYLINVYEAYDVLGLIKGGIYND---LSLSVGEALMRRSD-------DFEGVYTCTKNDKLSTIMDNIRKARVHRF  296 (323)
T ss_dssp             ECTTCBEEEEEETTHHHHHHHTTHHHH---TTSBHHHHGGGSCT-------TCCCCEEECTTCBHHHHHHHHHHSCCCEE
T ss_pred             ECCCCeEEEEEeHHHHHHHHhhchhhh---ccCCHHHHHhhccc-------cCCCCEEECCCCCHHHHHHHHHHhCCCEE
Confidence            999999999999999998776543322   25689998854110       01268999999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          405 VIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       405 ~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                      |||| ++|+++|+||.+||++++++
T Consensus       297 ~Vvd-~~~~l~Giit~~Dil~~l~~  320 (323)
T 3t4n_C          297 FVVD-DVGRLVGVLTLSDILKYILL  320 (323)
T ss_dssp             EEEC-TTSBEEEEEEHHHHHHHHHH
T ss_pred             EEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            9999 58999999999999999863

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=100.00  E-value=1.2e-34  Score=283.09  Aligned_cols=305  Identities=22%  Similarity=0.429  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHHHHhhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHh
Q 014157           88 ADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELG  167 (429)
Q Consensus        88 ~~~~~~~~~~~~fl~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~  167 (429)
                      .+.+...+.+.+||+..+++|+|+.+.++++++++.|+.+|++.|.+++++++||||.+.++++|++|..|++.++...+
T Consensus         6 ~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~   85 (334)
T 2qrd_G            6 ETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYY   85 (334)
T ss_dssp             HHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHh
Confidence            45566788899999999999999999999999999999999999999999999999987789999999999998776543


Q ss_pred             cCCCCC-ChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCc--eecCCCCcHHHHHHHHHhcCCceeeEEecCCCCC-C
Q 014157          168 NHGSNL-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPL--VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDG-S  243 (429)
Q Consensus       168 ~~~~~l-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~--i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~-~  243 (429)
                      ...... ..+.+...+++.+++....          +|.+++  +++.+++++.+|++.|.+++++++||++.  ..+ .
T Consensus        86 ~~~~~~~~~~~~~~~~~~~i~~~l~~----------im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~~  153 (334)
T 2qrd_G           86 QSSSFPEAIAEIDKFRLLGLREVERK----------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV--DGETG  153 (334)
T ss_dssp             HHCSCGGGGGGGGSCBHHHHHHHHHH----------HTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEE--ETTTT
T ss_pred             hccCCccHHHHHhhhchhhHHHHHHh----------hccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeC--CCCcC
Confidence            211010 1123445566666654432          255566  99999999999999999999999999973  222 0


Q ss_pred             CCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEE
Q 014157          244 FPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIP  323 (429)
Q Consensus       244 ~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lp  323 (429)
                      .+.++|++|.+|+++++......    ......+++++         ..+|.+++.++.+++++.+|++.|.+++++++|
T Consensus       154 ~~~~~Givt~~dl~~~~~~~~~~----~~~~~~~v~~l---------~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~  220 (334)
T 2qrd_G          154 SEMIVSVLTQYRILKFISMNCKE----TAMLRVPLNQM---------TIGTWSNLATASMETKVYDVIKMLAEKNISAVP  220 (334)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHCGG----GGGCCCBGGGS---------SCSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEE
T ss_pred             ccceEEEeeHHHHHHHHHhhccc----hhhhhCcHHHh---------CCcccCCceEECCCCcHHHHHHHHHHcCCcEEE
Confidence            11399999999999988754321    01122333332         113667889999999999999999999999999


Q ss_pred             EECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCE
Q 014157          324 IVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRR  403 (429)
Q Consensus       324 Vvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~  403 (429)
                      |+|++|+++|++|.+|+++....+.+.   ....++.++|....     .+  ..++.+|.+++++.+|++.|.++++++
T Consensus       221 Vvd~~~~~~Giit~~dl~~~~~~~~~~---~~~~~v~~~m~~~~-----~~--~~~~~~v~~~~~l~~~~~~m~~~~~~~  290 (334)
T 2qrd_G          221 IVNSEGTLLNVYESVDVMHLIQDGDYS---NLDLSVGEALLKRP-----AN--FDGVHTCRATDRLDGIFDAIKHSRVHR  290 (334)
T ss_dssp             EECTTCBEEEEEETHHHHHHHTTSCGG---GGGSBHHHHHTTCC-----TT--CCCCCEECTTCBHHHHHHHHHHSCCCE
T ss_pred             EEcCCCcEEEEEEHHHHHHHhhccccc---cccCcHHHHHhccc-----cc--CCCCEEECCCCcHHHHHHHHHHcCCCE
Confidence            999889999999999999876554321   22568898884210     00  037889999999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          404 LVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       404 l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      +|||| ++|+++|+||.+||++++.
T Consensus       291 l~Vvd-~~g~l~Giit~~dil~~~~  314 (334)
T 2qrd_G          291 LFVVD-ENLKLEGILSLADILNYII  314 (334)
T ss_dssp             EEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             EEEEC-CCCeEEEEEeHHHHHHHHH
Confidence            99999 5899999999999999875

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=100.00  E-value=8.3e-35  Score=283.82  Aligned_cols=300  Identities=33%  Similarity=0.569  Sum_probs=240.4

Q ss_pred             HHHHHHHHHhhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCC
Q 014157           92 VSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGS  171 (429)
Q Consensus        92 ~~~~~~~~fl~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~  171 (429)
                      ..++.+..||+..+++|+|+.+.++++++.+.|+.+|++.|.+++++++||+|.+.++++|++|..|++.++......+.
T Consensus        23 ~~~~~~~~~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~  102 (330)
T 2v8q_E           23 SNSSVYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL  102 (330)
T ss_dssp             CCSCHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccc
Confidence            45677999999999999999999999999999999999999999999999999877899999999999987754331111


Q ss_pred             CCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEE
Q 014157          172 NLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA  251 (429)
Q Consensus       172 ~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgil  251 (429)
                       .....+....++.|....          +++|.++++++.+++++.+|++.|.+++++++||+|  .+.|   +++|++
T Consensus       103 -~~~~~l~~~~~~~~~~~~----------~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~---~~~Giv  166 (330)
T 2v8q_E          103 -VQIYELEEHKIETWREVY----------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID--PESG---NTLYIL  166 (330)
T ss_dssp             -TTCCCGGGCBHHHHHHHH----------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC--TTTC---CEEEEE
T ss_pred             -cchhHHhhccHHHHHHHH----------hhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEe--CCCC---cEEEEE
Confidence             111334445566665432          346889999999999999999999999999999995  2156   799999


Q ss_pred             ehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcE
Q 014157          252 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSL  331 (429)
Q Consensus       252 t~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~l  331 (429)
                      |.+|+++++........ ...++..+++++.+.+         .+++.++.+++++.++++.|.+++++++||+|++|++
T Consensus       167 t~~dl~~~~~~~~~~~~-~~~~~~~~v~~~~v~~---------~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l  236 (330)
T 2v8q_E          167 THKRILKFLKLFITEFP-KPEFMSKSLEELQIGT---------YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRV  236 (330)
T ss_dssp             CHHHHHHHHHHHSCSSS-CCGGGGSBHHHHTCSB---------CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBE
T ss_pred             cHHHHHHHHHHHhhccC-chhhhcCCHHHhcccC---------cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcE
Confidence            99999998876543211 1112334444443221         1478899999999999999999999999999989999


Q ss_pred             EEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC
Q 014157          332 LDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS  411 (429)
Q Consensus       332 vGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~  411 (429)
                      +|++|.+|+++......+..   .+.++.++|..+.       .|.+++++|.+++++.+|+++|.+++++++||+| ++
T Consensus       237 ~Giit~~dl~~~~~~~~~~~---~~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~  305 (330)
T 2v8q_E          237 VDIYSKFDVINLAAEKTYNN---LDVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD-EH  305 (330)
T ss_dssp             EEEEEGGGTGGGGGSSCCCC---CSSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TT
T ss_pred             EEEEEHHHHHHHHhcccccc---ccCcHHHHHhccc-------cccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEc-CC
Confidence            99999999998665433221   2468899885321       2456899999999999999999999999999999 48


Q ss_pred             CeEEEEEeHHHHHHHhh
Q 014157          412 KRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       412 g~l~GiIs~~Dil~~l~  428 (429)
                      |+++|+||..||++++.
T Consensus       306 g~l~Giit~~Dil~~~~  322 (330)
T 2v8q_E          306 DVVKGIVSLSDILQALV  322 (330)
T ss_dssp             SBEEEEEEHHHHHHHHH
T ss_pred             CcEEEEEeHHHHHHHHH
Confidence            99999999999999875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=100.00  E-value=2.5e-32  Score=259.28  Aligned_cols=268  Identities=14%  Similarity=0.292  Sum_probs=207.8

Q ss_pred             ccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHH
Q 014157          106 AYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISA  185 (429)
Q Consensus       106 ~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~  185 (429)
                      +.+.+..+ ++++++++.|+.+|++.|.+++++++||+|++.++++|++|..|++.++.....      ...++......
T Consensus         5 v~~~i~~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~------~~~~~~~~~~~   77 (280)
T 3kh5_A            5 VMKIAQNK-KIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSK------YNLIREKHERN   77 (280)
T ss_dssp             GGGTSCCS-CCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGG------GHHHHTTSTTC
T ss_pred             HHHHhcCC-CcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccch------hhhhhhccccc
Confidence            34445443 899999999999999999999999999999767899999999999976621110      00011100000


Q ss_pred             HHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcc
Q 014157          186 WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR  265 (429)
Q Consensus       186 ~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~  265 (429)
                      ...      .....++++|.++++++.+++++.+|++.|.+++++++||+|   +++   +++|++|.+|+++++.....
T Consensus        78 ~~~------~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~  145 (280)
T 3kh5_A           78 FLA------AINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVN---DEN---QLISLITERDVIRALLDKID  145 (280)
T ss_dssp             HHH------HTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEEC---TTC---BEEEEEEHHHHHHHHGGGSC
T ss_pred             hhH------HhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEc---CCC---EEEEEEEHHHHHHHHhhcCC
Confidence            000      001234567889999999999999999999999999999996   446   79999999999988764321


Q ss_pred             cCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          266 HCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       266 ~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                      .        ..+            ++++|.+++.++.+++++.++++.|.+++++++||+ ++|+++|++|.+|+++...
T Consensus       146 ~--------~~~------------v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          146 E--------NEV------------IDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             T--------TCB------------SGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHT
T ss_pred             C--------CCC------------HHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHh
Confidence            1        112            334477789999999999999999999999999999 6899999999999998764


Q ss_pred             ccccc-c------cccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEE
Q 014157          346 DKAYA-H------INLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIV  418 (429)
Q Consensus       346 ~~~~~-~------l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiI  418 (429)
                      .+... .      ....+.++.++|             .+++++|++++++.+|++.|.+++++++||+| ++|+++|+|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~v~~~m-------------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giv  270 (280)
T 3kh5_A          205 SDWAFNHMQTGNVREITNVRMEEIM-------------KRDVITAKEGDKLKKIAEIMVTNDIGALPVVD-ENLRIKGII  270 (280)
T ss_dssp             SHHHHHHHHSCCTHHHHHCBHHHHS-------------BSSCCCBCTTCBHHHHHHHHHHHTCCEEEEEC-TTCBEEEEE
T ss_pred             hhhhhhhhcccchhhhhCCcHHHHh-------------cCCCEEECCCCCHHHHHHHHHHCCCCEEEEEC-CCCeEEEEE
Confidence            32110 0      001234566655             56899999999999999999999999999999 588999999


Q ss_pred             eHHHHHHHh
Q 014157          419 SLSDIFKFL  427 (429)
Q Consensus       419 s~~Dil~~l  427 (429)
                      |++||++++
T Consensus       271 t~~dil~~l  279 (280)
T 3kh5_A          271 TEKDVLKYF  279 (280)
T ss_dssp             EHHHHGGGG
T ss_pred             eHHHHHHhh
Confidence            999999986

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.97  E-value=2e-31  Score=255.84  Aligned_cols=262  Identities=11%  Similarity=0.150  Sum_probs=207.7

Q ss_pred             ccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhH
Q 014157          104 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  183 (429)
Q Consensus       104 ~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i  183 (429)
                      .++-|+|..  ++++++++.|+.+|++.|.+++++++||+|   ++++|++|..|++..+.....  .        ....
T Consensus        20 ~~V~dim~~--~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d---~~l~GivT~~Di~~~~~~~~~--~--------~~~~   84 (296)
T 3ddj_A           20 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCK--D--------SCSQ   84 (296)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC-------------CCH
T ss_pred             cCHHHhccC--CCcEECCCccHHHHHHHHHHCCCceEEEEC---CeEEEEEeHHHHHHHhccccc--c--------cccc
Confidence            456677744  899999999999999999999999999998   789999999999876621110  0        0001


Q ss_pred             HHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhh
Q 014157          184 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  263 (429)
Q Consensus       184 ~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~  263 (429)
                      ..+...      ....++++|.++++++.+++++.+|++.|.+++++++||+|   +++   +++|++|.+|+++++...
T Consensus        85 ~~~~~~------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd---~~~---~lvGivt~~dl~~~~~~~  152 (296)
T 3ddj_A           85 GDLYHI------STTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD---IND---KPVGIVTEREFLLLYKDL  152 (296)
T ss_dssp             HHHHHH------HTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHGGGGGGS
T ss_pred             hhhHHH------hcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEeHHHHHHhhhcc
Confidence            111110      12234567888999999999999999999999999999996   445   799999999998755322


Q ss_pred             cccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          264 FRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       264 ~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                      .         ...++            +++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.
T Consensus       153 ~---------~~~~v------------~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~  211 (296)
T 3ddj_A          153 D---------EIFPV------------KVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQ  211 (296)
T ss_dssp             C---------CCCBH------------HHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             c---------ccccH------------HHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence            1         11233            33377789999999999999999999999999999999999999999999986


Q ss_pred             Hhccccccc---ccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeH
Q 014157          344 AKDKAYAHI---NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL  420 (429)
Q Consensus       344 ~~~~~~~~l---~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~  420 (429)
                      .... +..+   .....++.++|             .+++++|.+++++.+|++.|.+++++++||+| ++|+++|+||+
T Consensus       212 ~~~~-~~~~~~~~~~~~~v~~~m-------------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giit~  276 (296)
T 3ddj_A          212 LAKA-VDKLDPDYFYGKVVKDVM-------------VTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGIITE  276 (296)
T ss_dssp             HHHH-HHHTCTHHHHTCBHHHHS-------------BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEH
T ss_pred             HHHH-HhhcChhhhcCcCHHHHh-------------CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEcH
Confidence            6521 1110   01245677765             56889999999999999999999999999999 58999999999


Q ss_pred             HHHHHHhh
Q 014157          421 SDIFKFLL  428 (429)
Q Consensus       421 ~Dil~~l~  428 (429)
                      +||++++.
T Consensus       277 ~Dil~~l~  284 (296)
T 3ddj_A          277 RDLLIALH  284 (296)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999875

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.96  E-value=3.9e-29  Score=237.77  Aligned_cols=256  Identities=18%  Similarity=0.290  Sum_probs=177.8

Q ss_pred             ccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhh
Q 014157          114 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL  193 (429)
Q Consensus       114 ~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~  193 (429)
                      .++++++++.|+.+|++.|.++++..+||+|. .++++|++|..|++..+.               ..            
T Consensus         9 ~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~~---------------~~------------   60 (282)
T 2yzq_A            9 QNPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPD---------------EE------------   60 (282)
T ss_dssp             ESCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC----------------------------------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhhc---------------cC------------
Confidence            46788999999999999999999999999996 478999999999874331               00            


Q ss_pred             hcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHH-HHHhhcccCCCCCc
Q 014157          194 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLP  272 (429)
Q Consensus       194 ~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~-~l~~~~~~~~~~~~  272 (429)
                           .++++|.++++++.+++++.+|++.|.+++++.+||+|   +++   +++|++|..|+++ ++...  .     .
T Consensus        61 -----~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd---~~~---~~~Giit~~di~~~~~~~~--~-----~  122 (282)
T 2yzq_A           61 -----QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD---SKG---KPVGILTVGDIIRRYFAKS--E-----K  122 (282)
T ss_dssp             --------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHTTTTC--S-----G
T ss_pred             -----CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---EEEEEEEHHHHHHHHHhcc--C-----C
Confidence                 01235677789999999999999999999999999996   345   7999999999987 55421  0     0


Q ss_pred             ccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH------HHHhc
Q 014157          273 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT------ALAKD  346 (429)
Q Consensus       273 ~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~------~~~~~  346 (429)
                      ....            .++++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+|++      +....
T Consensus       123 ~~~~------------~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~  190 (282)
T 2yzq_A          123 YKGV------------EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKS  190 (282)
T ss_dssp             GGGC------------BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----
T ss_pred             cccC------------cHHHHhCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhcc
Confidence            0111            23455777899999999999999999999999999999889999999999998      32210


Q ss_pred             cc--ccc-cccc-cccHHHHHh---cCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEe
Q 014157          347 KA--YAH-INLS-EMTIHQALQ---LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS  419 (429)
Q Consensus       347 ~~--~~~-l~l~-~~~v~~~l~---~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs  419 (429)
                      ..  ... ..+. .........   .........++|.+++++|.+++++.+|+++|.+++++++||+| ++|+++|+||
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~lvGiit  269 (282)
T 2yzq_A          191 TELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGLIR  269 (282)
T ss_dssp             ----------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEEEE
T ss_pred             chhhhhhhhhhhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEEC-CCCCEEEEEe
Confidence            00  000 0000 000000000   00011223346788999999999999999999999999999999 4789999999


Q ss_pred             HHHHHHHhh
Q 014157          420 LSDIFKFLL  428 (429)
Q Consensus       420 ~~Dil~~l~  428 (429)
                      ++||++++.
T Consensus       270 ~~Dil~~~~  278 (282)
T 2yzq_A          270 DFDLLKVLV  278 (282)
T ss_dssp             HHHHGGGGC
T ss_pred             HHHHHHHHH
Confidence            999999875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.90  E-value=6.2e-23  Score=194.41  Aligned_cols=195  Identities=18%  Similarity=0.319  Sum_probs=155.9

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc-cccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP-ICAI  281 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~-v~~l  281 (429)
                      +|+++++++++++|+.+|+++|.+++++++||++  .+++   +++|++|.+||++++......     .++... ...+
T Consensus         9 i~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d--~~~~---~~~Givt~~di~~~~~~~~~~-----~~~~~~~~~~~   78 (280)
T 3kh5_A            9 AQNKKIVTVYPTTTIRKALMTMNENKYRRLPVVN--AGNN---KVVGIITSMDIVDFMGGGSKY-----NLIREKHERNF   78 (280)
T ss_dssp             SCCSCCCCBCTTSBHHHHHHHHHHHCCCEEEEEC--TTTC---BEEEEEEHHHHHHHTTTSGGG-----HHHHTTSTTCH
T ss_pred             hcCCCcEEECCCCcHHHHHHHHHhCCCcEeeEEE--CCCC---eEEEEEEHHHHHHHhcccchh-----hhhhhccccch
Confidence            5788999999999999999999999999999995  2356   899999999999876432110     000000 0000


Q ss_pred             cCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 014157          282 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQ  361 (429)
Q Consensus       282 ~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~  361 (429)
                       ......+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.......     ...++.+
T Consensus        79 -~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~  152 (280)
T 3kh5_A           79 -LAAINEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKID-----ENEVIDD  152 (280)
T ss_dssp             -HHHTTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSC-----TTCBSGG
T ss_pred             -hHHhhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCC-----CCCCHHH
Confidence             0111234667788899999999999999999999999999999999999999999999987654322     1235555


Q ss_pred             HHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          362 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       362 ~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      +|             .+++.++++++++.++++.|.+++++++||++  +|+++|+||.+|+++++.
T Consensus       153 ~m-------------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Givt~~dl~~~~~  204 (280)
T 3kh5_A          153 YI-------------TRDVIVATPGERLKDVARTMVRNGFRRLPVVS--EGRLVGIITSTDFIKLLG  204 (280)
T ss_dssp             GC-------------BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHT
T ss_pred             Hh-------------CCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHh
Confidence            44             56889999999999999999999999999996  799999999999998863

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.88  E-value=9.2e-23  Score=195.32  Aligned_cols=192  Identities=18%  Similarity=0.225  Sum_probs=156.8

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++++|.++++++++++++.+|++.|.+++++++||++     +   +++|++|..||++++......        ....+
T Consensus        22 V~dim~~~~~~v~~~~~v~~a~~~m~~~~~~~~~V~d-----~---~l~GivT~~Di~~~~~~~~~~--------~~~~~   85 (296)
T 3ddj_A           22 IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN-----E---KIEGLLTTRDLLSTVESYCKD--------SCSQG   85 (296)
T ss_dssp             GGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES-----S---SEEEEEEHHHHHGGGTTCC-----------CCHH
T ss_pred             HHHhccCCCcEECCCccHHHHHHHHHHCCCceEEEEC-----C---eEEEEEeHHHHHHHhcccccc--------cccch
Confidence            4557889999999999999999999999999999993     5   799999999999876432110        00011


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccH
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTI  359 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v  359 (429)
                      .+. .....+++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.....      ....++
T Consensus        86 ~~~-~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~lvGivt~~dl~~~~~~~------~~~~~v  158 (296)
T 3ddj_A           86 DLY-HISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKDL------DEIFPV  158 (296)
T ss_dssp             HHH-HHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGGS------CCCCBH
T ss_pred             hhH-HHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHhhhcc------cccccH
Confidence            000 0012245666888899999999999999999999999999999999999999999998765432      124578


Q ss_pred             HHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          360 HQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       360 ~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      .++|             .+++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus       159 ~~~m-------------~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          159 KVFM-------------STKVQTIYKEVRLDQAVKLMLRRGFRRLPVID-DDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             HHHS-------------BCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             HHhh-------------cCCCeEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence            8876             45788999999999999999999999999999 5899999999999998763

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.87  E-value=2.1e-21  Score=188.78  Aligned_cols=207  Identities=16%  Similarity=0.251  Sum_probs=161.4

Q ss_pred             CccC--CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc
Q 014157          201 GKAF--PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI  278 (429)
Q Consensus       201 g~~~--~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v  278 (429)
                      +++|  .++++++++++++.+|++.|.+++++++||++.  +.+   +++|++|.+|++..+...+.....    ....+
T Consensus        38 ~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~--~~~---~~vGivt~~Dll~~l~~~~~~~~~----~~~~l  108 (330)
T 2v8q_E           38 YDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS--KKQ---SFVGMLTITDFINILHRYYKSALV----QIYEL  108 (330)
T ss_dssp             GGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEET--TTT---EEEEEEEHHHHHHHHHHHHHHHTT----TCCCG
T ss_pred             hhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHHhcccc----chhHH
Confidence            4568  788999999999999999999999999999972  335   799999999999887654321000    01112


Q ss_pred             ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhccccc--ccccc
Q 014157          279 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYA--HINLS  355 (429)
Q Consensus       279 ~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~~~--~l~l~  355 (429)
                      ....+..|...++++|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|++|.+|+++........  .-.+.
T Consensus       109 ~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~  188 (330)
T 2v8q_E          109 EEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFM  188 (330)
T ss_dssp             GGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSCSSSCCGGG
T ss_pred             hhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcHHHHHHHHHHHhhccCchhhh
Confidence            2333444545567788889999999999999999999999999999998 89999999999999866432110  00112


Q ss_pred             cccHHHHHhcCCCCCCcccccC-CCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          356 EMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       356 ~~~v~~~l~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      ..++.++.           +|. .++.++.+++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus       189 ~~~v~~~~-----------v~~~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~~~l~Giit~~dl~~~~~  250 (330)
T 2v8q_E          189 SKSLEELQ-----------IGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD-EKGRVVDIYSKFDVINLAA  250 (330)
T ss_dssp             GSBHHHHT-----------CSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC-TTSBEEEEEEGGGTGGGGG
T ss_pred             cCCHHHhc-----------ccCcCCceEECCCCCHHHHHHHHHHcCCCeEEEEC-CCCcEEEEEEHHHHHHHHh
Confidence            34555542           223 5788999999999999999999999999999 4899999999999998764

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.84  E-value=1.1e-20  Score=182.99  Aligned_cols=202  Identities=12%  Similarity=0.230  Sum_probs=151.2

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCc
Q 014157          205 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  284 (429)
Q Consensus       205 ~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  284 (429)
                      +.++++++.++|+.+|++.|.+++++++||++  .+.+   +++|++|.+|++.++...+..... ..    .+......
T Consensus        39 ~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d--~~~~---~lvGilt~~Dl~~~l~~~~~~~~~-~~----~l~~~~~~  108 (323)
T 3t4n_C           39 SYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWD--SKTS---RFAGLLTTTDFINVIQYYFSNPDK-FE----LVDKLQLD  108 (323)
T ss_dssp             EEEEEEEETTSBHHHHHHHHHHTTCSCEEEEE--TTTT---EEEEEECHHHHHHHHHHHHHCGGG-GG----GGGGCBHH
T ss_pred             CCcEEEEcCCCcHHHHHHHHHHcCCceEEEEe--CCCC---eEEEEEEHHHHHHHHHHHHcCcch-hH----HHHHHHHH
Confidence            35688999999999999999999999999996  2445   799999999999987654322110 00    11111100


Q ss_pred             ccc--cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCc-----EEEEEeHHHHHHHHhcccccccccccc
Q 014157          285 TWV--PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS-----LLDIYCRSDITALAKDKAYAHINLSEM  357 (429)
Q Consensus       285 ~~~--~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~-----lvGivt~~Di~~~~~~~~~~~l~l~~~  357 (429)
                      .+.  .++.+.|.++++++.+++++.+|++.|.+++++++||+|+++.     ++|++|.+|+++........ ..+...
T Consensus       109 ~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~-~~~~~~  187 (323)
T 3t4n_C          109 GLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRE-THFLKI  187 (323)
T ss_dssp             HHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGG-GGGCCS
T ss_pred             HHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCc-hhhhhC
Confidence            110  1233456778999999999999999999999999999998775     99999999999866432111 122345


Q ss_pred             cHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          358 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       358 ~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      ++.+++.          .|.++++++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus       188 ~v~~~~~----------~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd-~~~~~~Giit~~dl~~~~~  247 (323)
T 3t4n_C          188 PIGDLNI----------ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID-ENGYLINVYEAYDVLGLIK  247 (323)
T ss_dssp             BGGGTTC----------SBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETTHHHHHHH
T ss_pred             cHHHcCC----------CCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEeHHHHHHHHh
Confidence            6666520          1456899999999999999999999999999999 5899999999999998764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.83  E-value=6.2e-21  Score=181.01  Aligned_cols=173  Identities=16%  Similarity=0.227  Sum_probs=130.0

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  282 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  282 (429)
                      +|.++++++++++++.+|+++|.+++++++||++   +++   +++|+++..|+++.+.             ..      
T Consensus         6 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d---~~~---~~~Giv~~~dl~~~~~-------------~~------   60 (282)
T 2yzq_A            6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVN---KEG---KLVGIISVKRILVNPD-------------EE------   60 (282)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEEC---TTC---CEEEEEESSCC--------------------------
T ss_pred             hccCCCeEECCCCcHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEHHHHHhhhc-------------cC------
Confidence            5778899999999999999999999999999996   356   7999999999985321             11      


Q ss_pred             CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH-HHhcccccccccccccHHH
Q 014157          283 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQ  361 (429)
Q Consensus       283 i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~-~~~~~~~~~l~l~~~~v~~  361 (429)
                            .++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|.+|+++ ....+..    ....++.+
T Consensus        61 ------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~----~~~~~v~~  130 (282)
T 2yzq_A           61 ------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEK----YKGVEIEP  130 (282)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSG----GGGCBSTT
T ss_pred             ------CHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCC----cccCcHHH
Confidence                  233447777899999999999999999999999999998899999999999997 5543210    11334444


Q ss_pred             HHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHH
Q 014157          362 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF  424 (429)
Q Consensus       362 ~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil  424 (429)
                      +             |..+++++.+++++.++++.|.+++++++||+| ++|+++|+||..|++
T Consensus       131 ~-------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          131 Y-------------YQRYVSIVWEGTPLKAALKALLLSNSMALPVVD-SEGNLVGIVDETDLL  179 (282)
T ss_dssp             T-------------SBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC-TTSCEEEEEEGGGGG
T ss_pred             H-------------hCCCCEEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHh
Confidence            4             466888999999999999999999999999999 489999999999998

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.82  E-value=4.5e-20  Score=179.63  Aligned_cols=209  Identities=12%  Similarity=0.165  Sum_probs=152.2

Q ss_pred             CccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc
Q 014157          201 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI  278 (429)
Q Consensus       201 g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v  278 (429)
                      +++|.+  +++++++++|+.+|++.|.+++++++||++.  +.+   +++|+++.+|++.++...+..... ...+ ..+
T Consensus        25 ~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~--~~~---~~vGiv~~~Dl~~~~~~~~~~~~~-~~~~-~~~   97 (334)
T 2qrd_G           25 YDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS--EAN---KFAGLLTMADFVNVIKYYYQSSSF-PEAI-AEI   97 (334)
T ss_dssp             GGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET--TTT---EEEEEECHHHHHHHHHHHHHHCSC-GGGG-GGG
T ss_pred             hhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeC--CCC---eEEEEEEHHHHHHHHHHHhhccCC-ccHH-HHH
Confidence            445643  5889999999999999999999999999962  335   899999999999887543221000 0000 001


Q ss_pred             ccccCcccccccCCCCCCCc--eeecCCCCHHHHHHHHHhcCCCEEEEECCCC-c----EEEEEeHHHHHHHHhcccccc
Q 014157          279 CAIPVGTWVPKIGEPNRRPL--AMLRPSASLSAALNLLVQAQVSSIPIVDDND-S----LLDIYCRSDITALAKDKAYAH  351 (429)
Q Consensus       279 ~~l~i~~~~~~v~~~~~~~~--~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g-~----lvGivt~~Di~~~~~~~~~~~  351 (429)
                      ....+..+....+++|.+++  +++.+++++.++++.|.+++++++||+|++| +    ++|++|.+|+++....... .
T Consensus        98 ~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~~~~~~~-~  176 (334)
T 2qrd_G           98 DKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCK-E  176 (334)
T ss_dssp             GSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEEHHHHHHHHHHHCG-G
T ss_pred             hhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEeeHHHHHHHHHhhcc-c
Confidence            11111111111122344556  8999999999999999999999999998765 4    9999999999976643211 1


Q ss_pred             cccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          352 INLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       352 l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      ..+...++.+++          .+|.+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus       177 ~~~~~~~v~~l~----------~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd-~~~~~~Giit~~dl~~~~~  242 (334)
T 2qrd_G          177 TAMLRVPLNQMT----------IGTWSNLATASMETKVYDVIKMLAEKNISAVPIVN-SEGTLLNVYESVDVMHLIQ  242 (334)
T ss_dssp             GGGCCCBGGGSS----------CSBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEETHHHHHHHT
T ss_pred             hhhhhCcHHHhC----------CcccCCceEECCCCcHHHHHHHHHHcCCcEEEEEc-CCCcEEEEEEHHHHHHHhh
Confidence            112234555531          02466889999999999999999999999999999 4899999999999998764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.80  E-value=5.8e-20  Score=161.47  Aligned_cols=125  Identities=22%  Similarity=0.340  Sum_probs=102.7

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------c-----------
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------I-----------  352 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~------l-----------  352 (429)
                      ++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.........      .           
T Consensus        20 V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (170)
T 4esy_A           20 IRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLF   99 (170)
T ss_dssp             GGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHH
T ss_pred             HHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhhh
Confidence            44558889999999999999999999999999999999999999999999975432211000      0           


Q ss_pred             -ccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          353 -NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       353 -~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                       .....++.+             +|++++++|++++++.+|+++|.+++++++||+|  +|+++|+||++||+++|+.
T Consensus       100 ~~~~~~~v~~-------------im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd--~g~lvGivt~~Dil~~l~~  162 (170)
T 4esy_A          100 ETGRKLTASA-------------VMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ--DGVPVGIVTRRDLLKLLLL  162 (170)
T ss_dssp             HHHTTCBHHH-------------HCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHTTTSCC
T ss_pred             ccccccchhh-------------hcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE--CCEEEEEEEHHHHHHHHHh
Confidence             001223343             5578999999999999999999999999999999  5999999999999998863

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.76  E-value=3.3e-18  Score=143.25  Aligned_cols=119  Identities=16%  Similarity=0.307  Sum_probs=104.1

Q ss_pred             cCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.  ..++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+.      ...++.++|   
T Consensus         8 v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~------~~~~v~~~m---   78 (130)
T 3i8n_A            8 VTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS------GQKQLGAVM---   78 (130)
T ss_dssp             CTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT------TTSBHHHHS---
T ss_pred             HhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC------CcCCHHHHh---
Confidence            556677  356789999999999999999999999999987 89999999999998765431      246788876   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                 +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||+.||+++++|
T Consensus        79 -----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~~vGivt~~dil~~l~g  129 (130)
T 3i8n_A           79 -----------RPIQVVLNNTALPKVFDQMMTHRLQLALVVD-EYGTVLGLVTLEDIFEHLVG  129 (130)
T ss_dssp             -----------EECCEEETTSCHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             -----------cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEc-CCCCEEEEEEHHHHHHHHcC
Confidence                       2578999999999999999999999999999 58999999999999999876

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.76  E-value=1.5e-18  Score=144.78  Aligned_cols=119  Identities=13%  Similarity=0.385  Sum_probs=101.7

Q ss_pred             cCCCCCCC--ceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.+.  ++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++.....      ....++.++|   
T Consensus         5 v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~------~~~~~v~~~m---   75 (127)
T 3nqr_A            5 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSD------AEAFSMDKVL---   75 (127)
T ss_dssp             HHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTT------CCCCCHHHHC---
T ss_pred             HHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcc------CCCCCHHHHc---
Confidence            34457644  8899999999999999999999999999987 8999999999998765432      1246788876   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                . ++.++++++++.+|++.|.+++++++||+| ++|+++|+||+.||+++++|
T Consensus        76 ----------~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~g  126 (127)
T 3nqr_A           76 ----------R-TAVVVPESKRVDRMLKEFRSQRYHMAIVID-EFGGVSGLVTIEDILELIVG  126 (127)
T ss_dssp             ----------B-CCCEEETTCBHHHHHHHHHHTTCCEEEEEC-TTSCEEEEEEHHHHHHHC--
T ss_pred             ----------C-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                      2 467899999999999999999999999999 58999999999999999875

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.76  E-value=1.5e-18  Score=150.37  Aligned_cols=117  Identities=21%  Similarity=0.318  Sum_probs=97.4

Q ss_pred             CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      .+++++.+++|+.+|+++|.+++++++||+|++|+++|++|.+|+++...........+...++.++             
T Consensus        25 ~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~i-------------   91 (156)
T 3k6e_A           25 KNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHM-------------   91 (156)
T ss_dssp             TSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGT-------------
T ss_pred             hHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHh-------------
Confidence            4689999999999999999999999999999999999999999999866543322212234455554             


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      |.+++.++++++++.+|++.|.++++  +|||| ++|+++|+||++||++++.
T Consensus        92 m~~~~~~v~~~~~l~~~~~~m~~~~~--lpVVd-~~g~l~GiiT~~Dil~~~~  141 (156)
T 3k6e_A           92 TKTDVAVVSPDFTITEVLHKLVDESF--LPVVD-AEGIFQGIITRKSILKAVN  141 (156)
T ss_dssp             CBCSCCCBCTTCCHHHHHHHTTTSSE--EEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             hcCCceecccccHHHHHHHHHHHcCC--eEEEe-cCCEEEEEEEHHHHHHHHH
Confidence            46789999999999999999998764  99999 5999999999999999873

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.75  E-value=5.6e-18  Score=145.06  Aligned_cols=119  Identities=20%  Similarity=0.320  Sum_probs=103.9

Q ss_pred             ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          289 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       289 ~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++......       ..++.++|  
T Consensus        24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~~m--   94 (148)
T 3lv9_A           24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN-------KIELEEIL--   94 (148)
T ss_dssp             BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------CCCGGGTC--
T ss_pred             CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC-------CccHHHhc--
Confidence            35556877  89999999999999999999999999999987 89999999999998654421       24566644  


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                  +++.++++++++.+|++.|.+++++++||+| ++|+++|+||+.||+++++|
T Consensus        95 ------------~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           95 ------------RDIIYISENLTIDKALERIRKEKLQLAIVVD-EYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             ------------BCCEEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSSEEEEEEHHHHHHHHHH
T ss_pred             ------------CCCeEECCCCCHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                        4789999999999999999999999999999 58999999999999999864

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.75  E-value=5.7e-18  Score=141.94  Aligned_cols=121  Identities=12%  Similarity=0.199  Sum_probs=103.1

Q ss_pred             cCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.  .+++++.+++++.+|++.|.+++++++||+++ +|+++|++|.+|+++....+..    +...++.++|   
T Consensus         4 v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~----~~~~~v~~~m---   76 (130)
T 3hf7_A            4 VNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE----FTKEIMLRAA---   76 (130)
T ss_dssp             HHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSC----CCHHHHHHHS---
T ss_pred             HHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCc----cchhhHHHhc---
Confidence            344564  36889999999999999999999999999975 6899999999999987655321    2235677765   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                 +++.++++++++.+|++.|.+++++++||+| ++|+++|+||+.||+++++|
T Consensus        77 -----------~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           77 -----------DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD-EYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             -----------BCCCEEETTCBHHHHHHHHHHHCCCEEEEEC-TTSCEEEEEEHHHHHHHHHC
T ss_pred             -----------cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEc-CCCCEEEEeeHHHHHHHHhC
Confidence                       3678999999999999999999999999999 58999999999999999875

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.74  E-value=5.7e-18  Score=139.75  Aligned_cols=118  Identities=20%  Similarity=0.375  Sum_probs=103.9

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+++....+        ..++.++|      
T Consensus         3 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~--------~~~v~~~~------   68 (122)
T 3kpb_A            3 VKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN--------KKTIEEIM------   68 (122)
T ss_dssp             HHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT--------CCBGGGTS------
T ss_pred             hHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc--------ccCHHHHh------
Confidence            4456888899999999999999999999999999999999999999999999876542        13566654      


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                             .+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.+
T Consensus        69 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           69 -------TRNVITAHEDEPVDHVAIKMSKYNISGVPVVD-DYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             -------BSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHC-
T ss_pred             -------cCCCeEECCCCCHHHHHHHHHHhCCCeEEEEC-CCCCEEEEEeHHHHHHHhhc
Confidence                   56788999999999999999999999999999 48999999999999998853

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.74  E-value=2e-17  Score=145.51  Aligned_cols=119  Identities=18%  Similarity=0.344  Sum_probs=104.3

Q ss_pred             ccCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          289 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       289 ~v~~~~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      +++++|.  ++++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++....+.       ..++.++|  
T Consensus        43 ~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~im--  113 (172)
T 3lhh_A           43 TISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE-------RLELVDLV--  113 (172)
T ss_dssp             CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC-------CCCGGGGC--
T ss_pred             CHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC-------cccHHHHh--
Confidence            3566687  678999999999999999999999999999987 99999999999998765431       34566654  


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                  ++++++.+++++.+|++.|.+++++++||+| ++|+++|+||+.||++++++
T Consensus       114 ------------~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd-~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          114 ------------KNCNFVPNSLSGMELLEHFRTTGSQMVFVVD-EYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             ------------BCCEEEETTCCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHHT
T ss_pred             ------------cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEe-CCCCEEEEeeHHHHHHHHhC
Confidence                        4789999999999999999999999999999 58999999999999999875

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.74  E-value=4.2e-18  Score=142.49  Aligned_cols=117  Identities=14%  Similarity=0.331  Sum_probs=100.0

Q ss_pred             cCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.  ++++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++.....        ..++.++|   
T Consensus         7 v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--------~~~v~~~m---   75 (129)
T 3jtf_A            7 VADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--------ALDIRSLV---   75 (129)
T ss_dssp             HHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--------TSCGGGGC---
T ss_pred             HHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--------CcCHHHHh---
Confidence            445576  567899999999999999999999999999985 8999999999998754321        34566654   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                . ++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||+.||+++++|
T Consensus        76 ----------~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd-~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           76 ----------R-PAVFIPEVKRLNVLLREFRASRNHLAIVID-EHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             ----------B-CCCEEETTCBHHHHHHHHHTSSCCEEEEEC-C-CCEEEEEEHHHHHHHHHH
T ss_pred             ----------C-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                      2 478999999999999999999999999999 58999999999999999864

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.73  E-value=2.7e-17  Score=136.14  Aligned_cols=119  Identities=18%  Similarity=0.288  Sum_probs=104.1

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|++|.+|+++....+.    .....++.++|      
T Consensus         3 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~----~~~~~~v~~~m------   71 (125)
T 1pbj_A            3 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD----DLAEVKVWEVM------   71 (125)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC----CTTTSBHHHHC------
T ss_pred             HHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCC----cccccCHHHHc------
Confidence            3455777899999999999999999999999999999 899999999999997665432    12356788876      


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                             .+++.++.+++++.+|++.|.+++.+++||+| + |+++|+||..||++++.
T Consensus        72 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           72 -------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-D-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             -------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHC
T ss_pred             -------CCCCeEECCCCCHHHHHHHHHhcCCcEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                   45789999999999999999999999999999 4 99999999999999875

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.72  E-value=2e-17  Score=140.30  Aligned_cols=120  Identities=14%  Similarity=0.200  Sum_probs=103.7

Q ss_pred             cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCC--cEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          288 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDND--SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       288 ~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g--~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      .+++++|.+++.++.+++++.+|++.|.+++++++||+|++|  +++|++|.+|+++....+..     .+.++.++|  
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~~m--   77 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD-----LDGPAMPIA--   77 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC-----TTSBSGGGC--
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCC-----CCCCHHHHc--
Confidence            356677888999999999999999999999999999999888  99999999999986644211     134566654  


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                                 .+++.++.++ ++.+|++.|.+++++++||+| ++|+++|+||..||++++
T Consensus        78 -----------~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           78 -----------NSPITVLDTD-PVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             -----------BCCCEEETTS-BHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCH
T ss_pred             -----------CCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEc-CCCcEEEEEEHHHHHHHH
Confidence                       5689999999 999999999999999999999 589999999999998765

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.72  E-value=6e-18  Score=142.90  Aligned_cols=120  Identities=13%  Similarity=0.282  Sum_probs=100.7

Q ss_pred             cCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.  ++++++.+++++.+|++.|.+++++++||+|++ |+++|++|.+|+++......     ....++.++|   
T Consensus         5 v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-----~~~~~v~~~m---   76 (136)
T 3lfr_A            5 VRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-----GDSDDVKKLL---   76 (136)
T ss_dssp             HHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-----GGGCCGGGTC---
T ss_pred             hHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-----CCCcCHHHHc---
Confidence            344576  568899999999999999999999999999987 89999999999987654211     1235666654   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                . +++++.+++++.+|++.|.+++++++||+| ++|+++|+||+.||+++++|
T Consensus        77 ----------~-~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd-~~g~lvGiit~~Dil~~l~~  127 (136)
T 3lfr_A           77 ----------R-PATFVPESKRLNVLLREFRANHNHMAIVID-EYGGVAGLVTIEDVLEQIVG  127 (136)
T ss_dssp             ----------B-CCCEEETTCBHHHHHHHHHHHTCCEEEEEC-TTSCEEEEEEHHHHHTTC--
T ss_pred             ----------C-CCeEECCCCcHHHHHHHHHhcCCeEEEEEe-CCCCEEEEEEHHHHHHHHhC
Confidence                      3 488999999999999999999999999999 58999999999999998764

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.72  E-value=3.9e-17  Score=140.02  Aligned_cols=118  Identities=12%  Similarity=0.298  Sum_probs=104.0

Q ss_pred             ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          289 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       289 ~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++....+.    .+...++.++|   
T Consensus        29 ~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----~~~~~~v~~~m---  101 (149)
T 3k2v_A           29 RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGV----DMRDASIADVM---  101 (149)
T ss_dssp             BGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSS----CCTTCBHHHHS---
T ss_pred             CHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCC----CcccCcHHHHc---
Confidence            46666888  8999999999999999999999999999999999999999999998765432    23457888877   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHH
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK  425 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~  425 (429)
                                .+++.+|.+++++.+|++.|.+++++++||+|+  ++++|+||..||++
T Consensus       102 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~~Giit~~dil~  148 (149)
T 3k2v_A          102 ----------TRGGIRIRPGTLAVDALNLMQSRHITCVLVADG--DHLLGVVHMHDLLR  148 (149)
T ss_dssp             ----------EESCCEECTTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHTC
T ss_pred             ----------CCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC--CEEEEEEEHHHhhc
Confidence                      457889999999999999999999999999993  49999999999985

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.72  E-value=1.1e-17  Score=139.50  Aligned_cols=120  Identities=17%  Similarity=0.215  Sum_probs=103.3

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|+ |+++|++|.+|+++....+..     ...++.++|     
T Consensus         6 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~-----~~~~v~~~m-----   74 (128)
T 3gby_A            6 TFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPT-----VKEKLGEEL-----   74 (128)
T ss_dssp             BGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCC-----TTCBCCGGG-----
T ss_pred             EHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCc-----ccCcHHHHc-----
Confidence            355668889999999999999999999999999999998 999999999999875543211     124455554     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                              .+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus        75 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~g~~~Giit~~dll~~l~  125 (128)
T 3gby_A           75 --------LETVRSYRPGEQLFDNLISVAAAKCSVVPLAD-EDGRYEGVVSRKRILGFLA  125 (128)
T ss_dssp             --------CBCCCCBCTTSBGGGSHHHHHHCSSSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             --------cCCCcEECCCCCHHHHHHHHHhCCCcEEEEEC-CCCCEEEEEEHHHHHHHHH
Confidence                    56788999999999999999999999999999 5899999999999999875

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.72  E-value=9.3e-17  Score=136.25  Aligned_cols=124  Identities=27%  Similarity=0.513  Sum_probs=101.5

Q ss_pred             CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157          294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  373 (429)
Q Consensus       294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~  373 (429)
                      |.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++....+.+   .....++.++|.....    .
T Consensus        17 ~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~~m~~~~~----~   89 (144)
T 2nyc_A           17 TQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIY---NDLSLSVGEALMRRSD----D   89 (144)
T ss_dssp             BCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-------CCSBHHHHHHHCC------
T ss_pred             CCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhccccc---ccCCccHHHHHhcCcc----c
Confidence            55688999999999999999999999999999988999999999999986654321   1235688998743100    0


Q ss_pred             cccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          374 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       374 ~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                         ..++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus        90 ---~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           90 ---FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             -------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ---cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEEHHHHHHHHH
Confidence               02588999999999999999999999999999 5899999999999999875

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.71  E-value=2.1e-17  Score=138.57  Aligned_cols=121  Identities=17%  Similarity=0.266  Sum_probs=103.6

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~-~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      ++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++ +...+.    .....++.++|     
T Consensus        10 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~~v~~~m-----   80 (133)
T 1y5h_A           10 ARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL----DPNTATAGELA-----   80 (133)
T ss_dssp             HHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC----CTTTSBHHHHH-----
T ss_pred             HHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhcCC----CccccCHHHHh-----
Confidence            44457778899999999999999999999999999998899999999999984 443321    12356888887     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                              .+++.++++++++.+|++.|.+++.+++||+| + |+++|+||..||++++.+
T Consensus        81 --------~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~-g~~~Giit~~dil~~l~~  131 (133)
T 1y5h_A           81 --------RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-E-HRLVGIVTEADIARHLPE  131 (133)
T ss_dssp             --------TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHTCC-
T ss_pred             --------cCCCEEECCCCCHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHh
Confidence                    45788999999999999999999999999999 4 899999999999998753

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.71  E-value=9.7e-17  Score=135.29  Aligned_cols=120  Identities=19%  Similarity=0.393  Sum_probs=104.2

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHH-HHHHhcccccccccccccHHHHHhcCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI-TALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di-~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      ++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|+ .+....+.     ....++.++|     
T Consensus        10 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~~m-----   79 (138)
T 2p9m_A           10 VKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY-----TLETTIGDVM-----   79 (138)
T ss_dssp             GGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCC-----CSSCBHHHHS-----
T ss_pred             HHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcc-----cCCcCHHHHh-----
Confidence            455588889999999999999999999999999999988999999999999 77654322     2246788876     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCC-----CCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPG-----VRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~-----v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                              .+++.++.+++++.+|++.|.+++     ++++||+| ++|+++|+||..||++++.
T Consensus        80 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           80 --------TKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVD-KNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             --------CSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             --------CCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence                    457889999999999999999999     99999999 5899999999999999874

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.71  E-value=8.4e-17  Score=139.72  Aligned_cols=125  Identities=20%  Similarity=0.264  Sum_probs=104.3

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc----ccccccccHHHHHh
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA----HINLSEMTIHQALQ  364 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~----~l~l~~~~v~~~l~  364 (429)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++........    .......++.++| 
T Consensus         6 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im-   84 (160)
T 2o16_A            6 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVM-   84 (160)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHS-
T ss_pred             cHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHHh-
Confidence            35566888899999999999999999999999999999889999999999998765421100    0012245677766 


Q ss_pred             cCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          365 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                  .+++.+|.+++++.+|++.|.+++++++||+| + |+++|+||..||++++.
T Consensus        85 ------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           85 ------------HTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-K-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             ------------CSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-T-TEEEEEECHHHHHHHHH
T ss_pred             ------------cCCCeEECCCCCHHHHHHHHHHhCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                        56899999999999999999999999999999 4 99999999999999864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.71  E-value=5.3e-17  Score=140.82  Aligned_cols=120  Identities=16%  Similarity=0.334  Sum_probs=102.4

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++++|.+ ++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++....+.    .....++.++|      
T Consensus        19 v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~----~~~~~~v~~~m------   87 (159)
T 3fv6_A           19 VKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQ----ELTSVPVHIIM------   87 (159)
T ss_dssp             GGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCS----CTTTCBGGGTS------
T ss_pred             HHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccC----cccCcCHHHHH------
Confidence            4445766 559999999999999999999999999998999999999999998663321    12346777766      


Q ss_pred             CCcccccCC--CceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCC---eEEEEEeHHHHHHHhh
Q 014157          370 YSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSK---RVEGIVSLSDIFKFLL  428 (429)
Q Consensus       370 ~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g---~l~GiIs~~Dil~~l~  428 (429)
                             .+  +++++.+++++.+|++.|.+++++++||+| ++|   +++|+||..||++++.
T Consensus        88 -------~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           88 -------TRMPNITVCRREDYVMDIAKHLIEKQIDALPVIK-DTDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             -------EETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-ECSSSEEEEEEEEHHHHHHHHH
T ss_pred             -------cCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCcceeEEEEEEHHHHHHHHH
Confidence                   44  788999999999999999999999999999 477   9999999999999875

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.71  E-value=3.4e-17  Score=140.19  Aligned_cols=127  Identities=19%  Similarity=0.357  Sum_probs=102.6

Q ss_pred             ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc---------cccccccc
Q 014157          289 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY---------AHINLSEM  357 (429)
Q Consensus       289 ~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~---------~~l~l~~~  357 (429)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|++.+......         ........
T Consensus         6 ~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (152)
T 4gqw_A            6 TVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGK   85 (152)
T ss_dssp             BGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CC
T ss_pred             EhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccc
Confidence            35566777  79999999999999999999999999999998999999999999753221100         00011235


Q ss_pred             cHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          358 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       358 ~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                      ++.++|             .++++++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.+
T Consensus        86 ~v~~~m-------------~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           86 LVGDLM-------------TPAPLVVEEKTNLEDAAKILLETKYRRLPVVD-SDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             BHHHHS-------------EESCCCEESSSBHHHHHHHHHHSSCCEEEEEC-TTSBEEEEEEHHHHHHHHHC
T ss_pred             cHHHhc-------------CCCceEECCCCcHHHHHHHHHHCCCCEEEEEC-CCCcEEEEEEHHHHHHHHHh
Confidence            666665             55788999999999999999999999999999 58999999999999998753

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.71  E-value=9.6e-17  Score=135.41  Aligned_cols=120  Identities=18%  Similarity=0.364  Sum_probs=103.0

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH-HHhcccccccccccccHHHHHhcCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA-LAKDKAYAHINLSEMTIHQALQLGQ  367 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~-~~~~~~~~~l~l~~~~v~~~l~~~~  367 (429)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++ +...+.     ....++.++|    
T Consensus         8 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-----~~~~~v~~~m----   78 (138)
T 2yzi_A            8 PIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-----PYDIPVERIM----   78 (138)
T ss_dssp             BGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-----CTTSBGGGTC----
T ss_pred             hHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-----cccCCHHHHh----
Confidence            355668888999999999999999999999999999998899999999999974 433321     1245666654    


Q ss_pred             CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                               .+++.++.+++++.+|++.|.+++++++ |+| ++|+++|+||..||++++.
T Consensus        79 ---------~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd-~~g~~~Giit~~dil~~~~  128 (138)
T 2yzi_A           79 ---------TRNLITANVNTPLGEVLRKMAEHRIKHI-LIE-EEGKIVGIFTLSDLLEASR  128 (138)
T ss_dssp             ---------BCSCCEEETTSBHHHHHHHHHHHTCSEE-EEE-ETTEEEEEEEHHHHHHHHH
T ss_pred             ---------hCCCeEECCCCcHHHHHHHHHhcCCCEE-EEC-CCCCEEEEEEHHHHHHHHH
Confidence                     5688999999999999999999999999 999 4899999999999999875

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.71  E-value=2.2e-17  Score=142.34  Aligned_cols=118  Identities=18%  Similarity=0.309  Sum_probs=101.7

Q ss_pred             cCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEE-CC-CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          290 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIV-DD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       290 v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVv-d~-~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      ++++|.+  +++++.+++++.+|++.|.+++++++||+ |+ +|+++|+||.+|+++....+.       ..++.++|  
T Consensus        22 v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~-------~~~v~~~m--   92 (153)
T 3oco_A           22 ASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD-------KAKISTIM--   92 (153)
T ss_dssp             HHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT-------TSBGGGTC--
T ss_pred             eeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC-------CCcHHHHh--
Confidence            3344765  78999999999999999999999999999 65 489999999999998654421       34566644  


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                  +++.++.+++++.+|++.|.+++++++||+| ++|+++|+||+.||++++++
T Consensus        93 ------------~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           93 ------------RDIVSVPENMKVPDVMEEMSAHRVPMAIVID-EYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ------------BCCEEEETTSBHHHHHHHHHHTTCSCEEEEC-TTSCEEEEECHHHHHHHHHC
T ss_pred             ------------CCCeEECCCCCHHHHHHHHHHcCCcEEEEEe-CCCCEEEEeeHHHHHHHHhc
Confidence                        4789999999999999999999999999999 58999999999999999875

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.70  E-value=8e-17  Score=135.02  Aligned_cols=120  Identities=15%  Similarity=0.236  Sum_probs=103.8

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++....+..     ...++.++|     
T Consensus         5 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~~~-----   73 (133)
T 2ef7_A            5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS-----LETKAEEFM-----   73 (133)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC-----TTCBGGGTS-----
T ss_pred             cHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCC-----cccCHHHHc-----
Confidence            35566888899999999999999999999999999999 8999999999999876654311     135666655     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                              .+++.++.+++++.+|++.|.+++.+++||+| ++|+++|+||..||++++.
T Consensus        74 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd-~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           74 --------TASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             --------EECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             --------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHHHHHH
Confidence                    45788999999999999999999999999999 5899999999999998874

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.70  E-value=4e-17  Score=142.49  Aligned_cols=121  Identities=18%  Similarity=0.352  Sum_probs=103.2

Q ss_pred             cCCCCCC---CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNRR---PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~~---~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.+   +++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.......   .....++.++|   
T Consensus        26 v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~~m---   99 (165)
T 3fhm_A           26 VKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGA---ASLQQSVSVAM---   99 (165)
T ss_dssp             HHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGG---GGGTSBGGGTS---
T ss_pred             HHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCC---ccccCCHHHHh---
Confidence            3444663   68999999999999999999999999999999999999999999976654321   12245677655   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                .+++++|.+++++.+|++.|.+++++++||+| + |+++|+||..||++++.
T Consensus       100 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A          100 ----------TKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEE-N-GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             ----------BSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHTT
T ss_pred             ----------cCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHH
Confidence                      56889999999999999999999999999999 5 99999999999999875

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.70  E-value=1.2e-16  Score=140.88  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=100.5

Q ss_pred             cCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~-g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.  ++++++.+++++.+|++.|.+++++++||+|++ |+++|+||.+|++.......       ..++.  +   
T Consensus        38 v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~-------~~~v~--~---  105 (173)
T 3ocm_A           38 IRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG-------RVRRN--R---  105 (173)
T ss_dssp             STTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS-------SCCGG--G---
T ss_pred             HHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC-------cchhH--h---
Confidence            445575  368899999999999999999999999999876 89999999999998654321       23444  3   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                .++++++.+++++.+|+++|.+++++++||+| ++|+++|+||+.||+++++|
T Consensus       106 ----------~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd-e~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          106 ----------LRDPIIVHESIGILRLMDTLKRSRGQLVLVAD-EFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             ----------SBCCCEECGGGCHHHHHHHHHHSTTCCEEEEC-TTCCEEEEECHHHHHHHHHC
T ss_pred             ----------cCCCeEECCCCcHHHHHHHHHHcCCeEEEEEe-CCCCEEEEEeHHHHHHHHhC
Confidence                      34788999999999999999999999999999 58999999999999999875

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.70  E-value=2.9e-16  Score=146.07  Aligned_cols=200  Identities=11%  Similarity=0.091  Sum_probs=132.1

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCC---CCc----
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS---SLP----  272 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~---~~~----  272 (429)
                      ++++|.++++++.+++++.+|+++|.+++++++||+|   ++|   +++|++|..|+++++.........   ...    
T Consensus         9 v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd---~~~---~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v   82 (245)
T 3l2b_A            9 VEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVAD---GNN---HLLGMLSTSNITATYMDIWDSNILAKSATSLDNI   82 (245)
T ss_dssp             GGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred             HHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---EEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence            3557899999999999999999999999999999996   446   899999999999987543211000   000    


Q ss_pred             -------------ccCCccccccCcccc-cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC----------
Q 014157          273 -------------ILKLPICAIPVGTWV-PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN----------  328 (429)
Q Consensus       273 -------------~l~~~v~~l~i~~~~-~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~----------  328 (429)
                                   ......+.+.++... ..+.+.+....+.+-.+  -.++...+.+.+++++++++..          
T Consensus        83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgd--r~~~~~~~i~~~~~~liit~~~~~~~~v~~~a  160 (245)
T 3l2b_A           83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGD--RAEIQAELIELKVSLLIVTGGHTPSKEIIELA  160 (245)
T ss_dssp             HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECS--CHHHHHHHHHTTCSEEEECTTCCCCHHHHHHH
T ss_pred             HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECC--CHHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence                         000001111111111 11222233333333333  3788888899999999888532          


Q ss_pred             --CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccccC-CCceEEcCCCCHHHHHHHHHcCCCCEEE
Q 014157          329 --DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLV  405 (429)
Q Consensus       329 --g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~~~-~~~~~v~~~~~l~~a~~~m~~~~v~~l~  405 (429)
                        +.+..+.+..|........      ....+++++|             . +++.++++++++.+|++.|.+++++++|
T Consensus       161 ~~~~~~~i~t~~d~~~~~~~~------~~~~~v~~im-------------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~p  221 (245)
T 3l2b_A          161 KKNNITVITTPHDSFTASRLI------VQSLPVDYVM-------------TKDNLVAVSTDDLVEDVKVTMSETRYSNYP  221 (245)
T ss_dssp             HHHTCEEEECSSCHHHHHHHG------GGGSBHHHHS-------------BCTTCCCEETTSBHHHHHHHHHHHCCSEEE
T ss_pred             HHcCCeEEEeCCChHHHHHHH------hcCCceeeEe-------------cCCccEEECCCCcHHHHHHHHHhcCCceEE
Confidence              2234555555554433221      1135677766             5 5899999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEeHHHHHHHh
Q 014157          406 IVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       406 VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                      ||| ++|+++|+||++|++++.
T Consensus       222 Vvd-~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          222 VID-ENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             EEC-TTCBEEEEEECC------
T ss_pred             EEc-CCCeEEEEEEHHHhhchh
Confidence            999 589999999999999864

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.70  E-value=1.4e-16  Score=138.23  Aligned_cols=130  Identities=15%  Similarity=0.223  Sum_probs=103.8

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ  367 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~  367 (429)
                      ++++|.++++++.+++++.+|++.|.+++++++||+|+  +|+++|++|..|+++....+..........++.++|....
T Consensus        15 v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~~~   94 (164)
T 2pfi_A           15 VEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGC   94 (164)
T ss_dssp             HHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHTTC
T ss_pred             HHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhcccc
Confidence            44558888999999999999999999999999999996  7999999999999986644321111122467888885421


Q ss_pred             CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      .       ....+.++.+++++.+|++.|.+++++++||+|  +|+++|+||.+||++++.
T Consensus        95 ~-------~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A           95 P-------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS--RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             C-------CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             c-------ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            0       011268899999999999999999999999999  599999999999999874

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.69  E-value=2e-16  Score=136.77  Aligned_cols=124  Identities=8%  Similarity=0.130  Sum_probs=103.4

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCE-EEEECCCCcEEEEEeHHHHHHHHhcc------ccc-----cccccc
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSS-IPIVDDNDSLLDIYCRSDITALAKDK------AYA-----HINLSE  356 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~-lpVvd~~g~lvGivt~~Di~~~~~~~------~~~-----~l~l~~  356 (429)
                      +++++|.++++++.+++++.+|++.|.++++++ +||+|++ +++|++|.+|+++.....      ...     ......
T Consensus        17 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (157)
T 1o50_A           17 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIA   95 (157)
T ss_dssp             HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSS
T ss_pred             cHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHHHHcC
Confidence            456678889999999999999999999999999 9999977 999999999998764310      000     001234


Q ss_pred             ccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          357 MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       357 ~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      .++.++|             .+ ++++++++++.+|++.|.+++++++||+| ++|+++|+||..||++++.
T Consensus        96 ~~v~~im-------------~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           96 KNASEIM-------------LD-PVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             CBHHHHC-------------BC-CCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             CcHHHHc-------------CC-CeEECCCCCHHHHHHHHHHCCCcEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence            5667655             66 88999999999999999999999999999 5899999999999999874

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.69  E-value=1.4e-16  Score=137.62  Aligned_cols=123  Identities=14%  Similarity=0.308  Sum_probs=103.8

Q ss_pred             ccccCCCCC------CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHH
Q 014157          287 VPKIGEPNR------RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIH  360 (429)
Q Consensus       287 ~~~v~~~~~------~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~  360 (429)
                      +.+++++|.      ++++++.+++++.+|++.|.+++++++||++ +|+++|++|.+|+++.......   .....++.
T Consensus         6 ~~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~   81 (157)
T 4fry_A            6 STTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQER---SSKATRVE   81 (157)
T ss_dssp             -CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTC---CSSSCBHH
T ss_pred             HHHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccC---CccccCHH
Confidence            334555565      4569999999999999999999999999965 8999999999999986544321   12357888


Q ss_pred             HHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          361 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       361 ~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      ++|             .+++.++.+++++.+|+++|.+++++++||+|  +|+++|+||..||++++.
T Consensus        82 ~~m-------------~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dil~~l~  134 (157)
T 4fry_A           82 EIM-------------TAKVRYVEPSQSTDECMALMTEHRMRHLPVLD--GGKLIGLISIGDLVKSVI  134 (157)
T ss_dssp             HHS-------------BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             HHc-------------CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            876             45788999999999999999999999999999  599999999999999875

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.69  E-value=1.5e-16  Score=141.44  Aligned_cols=123  Identities=16%  Similarity=0.275  Sum_probs=104.9

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++........   .....++.++|     
T Consensus        10 ~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~---~~~~~~v~~im-----   81 (184)
T 1pvm_A           10 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---KPDEVPIRLVM-----   81 (184)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC---CGGGSBGGGTS-----
T ss_pred             CHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhccc---CcccCCHHHHh-----
Confidence            4566688899999999999999999999999999999988999999999999876542111   11245666655     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                              .+++.++.+++++.+|+++|.+++.+++||+| ++|+++|+||..||++++.
T Consensus        82 --------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           82 --------RKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             --------BSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             --------CCCCcEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                    56789999999999999999999999999999 4799999999999998763

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.68  E-value=1.2e-16  Score=136.94  Aligned_cols=122  Identities=22%  Similarity=0.238  Sum_probs=100.4

Q ss_pred             CCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc-cccccccHHHHHhcCC
Q 014157          291 GEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-INLSEMTIHQALQLGQ  367 (429)
Q Consensus       291 ~~~~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~-l~l~~~~v~~~l~~~~  367 (429)
                      +++|.  .+++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++......... -.....++.++|    
T Consensus        18 ~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m----   93 (150)
T 3lqn_A           18 KDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVM----   93 (150)
T ss_dssp             HHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTC----
T ss_pred             hhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHHHh----
Confidence            34466  35889999999999999999999999999999999999999999998764321100 011234556544    


Q ss_pred             CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                               .+++.++.+++++.+|++.|.++++  +|||| ++|+++|+||..||++++.
T Consensus        94 ---------~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd-~~g~~~Giit~~dil~~l~  142 (150)
T 3lqn_A           94 ---------KQDIPVLKLEDSFAKALEMTIDHPF--ICAVN-EDGYFEGILTRRAILKLLN  142 (150)
T ss_dssp             ---------BSSCCEEETTCBHHHHHHHHHHCSE--EEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ---------cCCCceeCCCCCHHHHHHHHHhCCE--EEEEC-CCCcEEEEEEHHHHHHHHH
Confidence                     6688999999999999999999987  99999 5899999999999999874

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.68  E-value=1.2e-16  Score=134.45  Aligned_cols=121  Identities=13%  Similarity=0.274  Sum_probs=101.7

Q ss_pred             cCCCCC---CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNR---RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~---~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.   ++++++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++.......   .....++.++|   
T Consensus         8 v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~---~~~~~~v~~~m---   80 (135)
T 2rc3_A            8 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK---PVKDTQVKEIM---   80 (135)
T ss_dssp             HHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS---CGGGSBGGGTS---
T ss_pred             HHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCC---CcccCCHHHhc---
Confidence            344566   6889999999999999999999999999998 8999999999999863322111   12245667655   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                                .+++.++.+++++.+|++.|.+++++++||+|  +|+++|+||..||++++.+
T Consensus        81 ----------~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           81 ----------TRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             ----------BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             ----------cCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe--CCEEEEEEEHHHHHHHHHh
Confidence                      56889999999999999999999999999999  5999999999999998753

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.68  E-value=5.1e-17  Score=142.60  Aligned_cols=155  Identities=19%  Similarity=0.276  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCC
Q 014157           92 VSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGS  171 (429)
Q Consensus        92 ~~~~~~~~fl~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~  171 (429)
                      ..++.+...|++..+.|+|  +.++++++++.|+.+|++.|.+++++++||+|.+ |+++|++|..|++..+.....   
T Consensus         6 ~~~~~~~~~l~~~~V~diM--~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~---   79 (170)
T 4esy_A            6 ARRRAIARAIRQVPIRDIL--TSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWI---   79 (170)
T ss_dssp             HHHHHHHHHHHTSBGGGGC--CSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTH---
T ss_pred             HHHHHHHHHHcCCCHHHhc--CCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccc---
Confidence            3466777888999999999  4589999999999999999999999999999964 899999999998754311000   


Q ss_pred             CCChhhhhh-hhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEE
Q 014157          172 NLTEEELET-HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI  250 (429)
Q Consensus       172 ~l~~~~l~~-~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgi  250 (429)
                      ....+.+.. ............  .....++.+|+++++++.+++++.+|+++|.+++++++||+|    +|   +++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd----~g---~lvGi  150 (170)
T 4esy_A           80 YEASEILSRAIPAPEVEHLFET--GRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQ----DG---VPVGI  150 (170)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHH--HTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEE----TT---EEEEE
T ss_pred             cchhhhhhhccchhhHHhhhcc--ccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEE----CC---EEEEE
Confidence            000000000 000000000000  011223457899999999999999999999999999999995    36   89999


Q ss_pred             EehhhHHHHHH
Q 014157          251 ASLSGILKCVC  261 (429)
Q Consensus       251 lt~~dIl~~l~  261 (429)
                      +|.+||++++.
T Consensus       151 vt~~Dil~~l~  161 (170)
T 4esy_A          151 VTRRDLLKLLL  161 (170)
T ss_dssp             EEHHHHTTTSC
T ss_pred             EEHHHHHHHHH
Confidence            99999997654

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.68  E-value=1.3e-16  Score=140.83  Aligned_cols=125  Identities=23%  Similarity=0.372  Sum_probs=100.6

Q ss_pred             cCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc--------cc--------
Q 014157          290 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY--------AH--------  351 (429)
Q Consensus       290 v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~--------~~--------  351 (429)
                      ++++|.+  +++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++++......        ..        
T Consensus         6 v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (180)
T 3sl7_A            6 VGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTF   85 (180)
T ss_dssp             HHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCCSH
T ss_pred             HHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhhh
Confidence            4455776  78999999999999999999999999999999999999999999842210000        00        


Q ss_pred             -------cccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHH
Q 014157          352 -------INLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF  424 (429)
Q Consensus       352 -------l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil  424 (429)
                             ......++.++|             .+++++|.+++++.+|+++|.+++++++||+| ++|+++|+||..||+
T Consensus        86 ~~~~~~~~~~~~~~v~~~m-------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~~vGiit~~dil  151 (180)
T 3sl7_A           86 NELQKLISKTYGKVVGDLM-------------TPSPLVVRDSTNLEDAARLLLETKFRRLPVVD-ADGKLIGILTRGNVV  151 (180)
T ss_dssp             HHHHHHHHTTTTCBHHHHS-------------EESCCCEETTSBHHHHHHHHTTSTTCEEEEEC-TTCBEEEEEEHHHHH
T ss_pred             HHHHHHHhccccccHHHHh-------------CCCceEeCCCCcHHHHHHHHHHcCCCEEEEEC-CCCeEEEEEEHHHHH
Confidence                   001134555554             56788999999999999999999999999999 589999999999999


Q ss_pred             HHhh
Q 014157          425 KFLL  428 (429)
Q Consensus       425 ~~l~  428 (429)
                      +++.
T Consensus       152 ~~~~  155 (180)
T 3sl7_A          152 RAAL  155 (180)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.67  E-value=3.1e-16  Score=135.28  Aligned_cols=123  Identities=17%  Similarity=0.214  Sum_probs=101.2

Q ss_pred             cCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccc-ccccccccccHHHHHhcC
Q 014157          290 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~-~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++...... +....+...++.++|   
T Consensus        13 v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m---   89 (157)
T 2emq_A           13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEEVM---   89 (157)
T ss_dssp             STTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGGTC---
T ss_pred             HHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHHHh---
Confidence            4555765  7889999999999999999999999999998899999999999998654321 100011234555544   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                .+++.++.+++++.+|++.|.++++  +|||| ++|+++|+||.+||++++.
T Consensus        90 ----------~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd-~~g~~~Giit~~dil~~~~  138 (157)
T 2emq_A           90 ----------NRNIPRLRLDDSLMKAVGLIVNHPF--VCVEN-DDGYFAGIFTRREVLKQLN  138 (157)
T ss_dssp             ----------BCCCCEEETTSBHHHHHHHHHHSSE--EEEEC-SSSSEEEEEEHHHHHHHHH
T ss_pred             ----------CCCCceecCCCcHHHHHHHHhhCCE--EEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                      6689999999999999999999987  99999 4899999999999999874

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.67  E-value=2.7e-16  Score=136.17  Aligned_cols=123  Identities=18%  Similarity=0.214  Sum_probs=102.5

Q ss_pred             cCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccc-ccccccccccHHHHHhcC
Q 014157          290 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~-~~~l~l~~~~v~~~l~~~  366 (429)
                      ++++|.+  +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|++....... +........++.++|   
T Consensus        16 v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m---   92 (159)
T 1yav_A           16 VGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVM---   92 (159)
T ss_dssp             HHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHS---
T ss_pred             HHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHhc---
Confidence            3444766  7899999999999999999999999999998899999999999998764421 101112356788876   


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                .+++.++.+++++.+|++.|.+.++  +||+| ++|+++|+||.+||++++.
T Consensus        93 ----------~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd-~~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           93 ----------LTDIPRLHINDPIMKGFGMVINNGF--VCVEN-DEQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             ----------BCSCCEEETTSBHHHHHHHTTTCSE--EEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ----------CCCCceEcCCCCHHHHHHHHHhCCE--EEEEe-CCCeEEEEEEHHHHHHHHH
Confidence                      5578999999999999999999987  99999 4899999999999999864

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.67  E-value=7.5e-16  Score=139.47  Aligned_cols=163  Identities=15%  Similarity=0.148  Sum_probs=127.3

Q ss_pred             eeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhc--
Q 014157          150 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN--  227 (429)
Q Consensus       150 ~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~--  227 (429)
                      ++.-++..|..+++..+.   .....+.|..+...+...+...+.|+..++|++|+++++++++++|+.+|++.|.++  
T Consensus         9 ~~~~m~~dd~~dll~~l~---~~~~~~~l~~l~~~e~~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~   85 (205)
T 3kxr_A            9 LFAQLSPEDLIEWSDYLP---ESFTDRALAQMGERQRQRFELYDQYSENEIGRYTDHQMLVLSDKATVAQAQRFFRRIEL   85 (205)
T ss_dssp             SGGGSCHHHHHHTTTTSC---HHHHHHHHHHSCHHHHHHHHHHHHSCTTCGGGGCBCCCCEEETTCBHHHHHHHHHHCCC
T ss_pred             HHHcCCHHHHHHHHHhCC---HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHhhccCceEEECCCCcHHHHHHHHHhhCc
Confidence            334456677776663321   111123344445555566667778899999999999999999999999999999987  


Q ss_pred             -CCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCC
Q 014157          228 -EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS  306 (429)
Q Consensus       228 -~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~s  306 (429)
                       +++.+||+|   +.+   +++|++|.+|++..             ....+            ++++|.++++++.++++
T Consensus        86 ~~~~~~~Vvd---~~~---~lvGivt~~dll~~-------------~~~~~------------v~~im~~~~~~v~~~~~  134 (205)
T 3kxr_A           86 DCNDNLFIVD---EAD---KYLGTVRRYDIFKH-------------EPHEP------------LISLLSEDSRALTANTT  134 (205)
T ss_dssp             TTCCEEEEEC---TTC---BEEEEEEHHHHTTS-------------CTTSB------------GGGGCCSSCCCEETTSC
T ss_pred             cCeeEEEEEc---CCC---eEEEEEEHHHHHhC-------------CCcch------------HHHHhcCCCeEECCCCC
Confidence             889999996   456   89999999998631             01222            34448888999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          307 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       307 l~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      +.+|++.|.+++++.+||+|++|+++|+||..|++..+..
T Consensus       135 l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          135 LLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             HHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            9999999999999999999999999999999999987754

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.66  E-value=4.1e-16  Score=141.22  Aligned_cols=116  Identities=19%  Similarity=0.239  Sum_probs=101.6

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhc---CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQA---QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~---~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      +++++|.++++++.+++++.+|++.|.++   +++.+||+|++|+++|++|.+|++...          .+.++.++|  
T Consensus        55 ~v~~iM~~~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~im--  122 (205)
T 3kxr_A           55 EIGRYTDHQMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE----------PHEPLISLL--  122 (205)
T ss_dssp             CGGGGCBCCCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC----------TTSBGGGGC--
T ss_pred             hHHhhccCceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC----------CcchHHHHh--
Confidence            35556888999999999999999999987   889999999999999999999986421          135667655  


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                 .++++++++++++.+|++.|.+++++.+|||| ++|+++|+||..||++.+.
T Consensus       123 -----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD-~~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          123 -----------SEDSRALTANTTLLDAAEAIEHSREIELPVID-DAGELIGRVTLRAATALVR  173 (205)
T ss_dssp             -----------CSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -----------cCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                       56889999999999999999999999999999 5899999999999998864

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.66  E-value=2.6e-16  Score=136.09  Aligned_cols=114  Identities=11%  Similarity=0.296  Sum_probs=99.1

Q ss_pred             ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCC-cEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          289 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDND-SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       289 ~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g-~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      +++++|.+  +++++.+++++.+|++.|.+++++++||+|+++ +++|++|.+|+++....+       ...++.++|  
T Consensus        39 ~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~-------~~~~v~~im--  109 (156)
T 3oi8_A           39 EVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP-------EQFHLKSIL--  109 (156)
T ss_dssp             BGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG-------GGCCHHHHC--
T ss_pred             CHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC-------CcccHHHHc--
Confidence            35556765  689999999999999999999999999999874 999999999998754332       246788876  


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHH
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF  424 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil  424 (429)
                                 . ++.++++++++.+|++.|.+++.+++||+| ++|+++|+||+.||+
T Consensus       110 -----------~-~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd-~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          110 -----------R-PAVFVPEGKSLTALLKEFREQRNHMAIVID-EYGGTSGLVTFEDII  155 (156)
T ss_dssp             -----------B-CCCEEETTSBHHHHHHHHHHTTCCEEEEEC-TTSSEEEEEEHHHHC
T ss_pred             -----------C-CCEEECCCCCHHHHHHHHHhcCCeEEEEEC-CCCCEEEEEEHHHhc
Confidence                       2 478999999999999999999999999999 589999999999986

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.65  E-value=1e-15  Score=139.43  Aligned_cols=157  Identities=13%  Similarity=0.170  Sum_probs=100.1

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++.+|.++++++.+++|+.+|+++|.+++++.+||+|   +++   +++|++|.+|+++.+             ...+  
T Consensus        15 ~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd---~~~---~l~Givt~~dl~~~~-------------~~~~--   73 (213)
T 1vr9_A           15 VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKD---REG---HFRGVVNKEDLLDLD-------------LDSS--   73 (213)
T ss_dssp             GGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEEC---TTS---BEEEEEEGGGGTTSC-------------TTSB--
T ss_pred             HHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEc---CCC---EEEEEEEHHHHHhhc-------------CCCc--
Confidence            3557899999999999999999999999999999996   346   799999999986421             0122  


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccH
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTI  359 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v  359 (429)
                                +.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++......         ..
T Consensus        74 ----------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~---------~~  134 (213)
T 1vr9_A           74 ----------VFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL---------AM  134 (213)
T ss_dssp             ----------SGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC---------C-
T ss_pred             ----------HHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh---------cC
Confidence                      44448788999999999999999999999999999998899999999999998654321         11


Q ss_pred             HHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEe
Q 014157          360 HQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE  408 (429)
Q Consensus       360 ~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd  408 (429)
                      .+.+..         +   .+.+.....++.+|.+.|.+++++.++|++
T Consensus       135 ~~~~~~---------l---~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~  171 (213)
T 1vr9_A          135 DVPGIR---------F---SVLLEDKPGELRKVVDALALSNINILSVIT  171 (213)
T ss_dssp             -------------------------------------------------
T ss_pred             CCCcEE---------E---EEEeCCCCccHHHHHHHHHHCCCcEEEEEE
Confidence            221100         0   111123344599999999999999999986

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.65  E-value=3.9e-16  Score=142.25  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=103.8

Q ss_pred             cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157          284 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  363 (429)
Q Consensus       284 ~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l  363 (429)
                      .+|...++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+.+...          +.++.++|
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~----------~~~v~~im   78 (213)
T 1vr9_A            9 HHHHMKVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFNKV   78 (213)
T ss_dssp             ----CBGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGGGC
T ss_pred             cccccCHHHhhcCCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC----------CCcHHHHc
Confidence            45666777889999999999999999999999999999999998899999999999975321          24556654


Q ss_pred             hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          364 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                   .++++++.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus        79 -------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGiit~~Dil~~~~  129 (213)
T 1vr9_A           79 -------------SLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALI  129 (213)
T ss_dssp             -------------BCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             -------------cCCCEEECCCCcHHHHHHHHHHhCCCEEEEEc-CCCEEEEEEEHHHHHHHHH
Confidence                         56889999999999999999999999999999 4799999999999998763

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.63  E-value=3.2e-15  Score=131.35  Aligned_cols=122  Identities=13%  Similarity=0.119  Sum_probs=102.2

Q ss_pred             cCCCCccCC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCccc
Q 014157          197 IDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL  274 (429)
Q Consensus       197 ~~~~g~~~~--~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l  274 (429)
                      ...++++|.  .+++++.+++++.+|++.|.+++++++||++  .+.+   +++|++|.+|+++.+....          
T Consensus        41 ~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~~----------  105 (172)
T 3lhh_A           41 ERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCR--NNVD---DMVGIISAKQLLSESIAGE----------  105 (172)
T ss_dssp             --CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEES--SSTT---SEEEEEEHHHHHHHHHTTC----------
T ss_pred             CCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---eEEEEEEHHHHHHHHhhcC----------
Confidence            345677888  7899999999999999999999999999996  2225   7999999999998765320          


Q ss_pred             CCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          275 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       275 ~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      ..+            ++++| ++++++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+++.+..
T Consensus       106 ~~~------------v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~  164 (172)
T 3lhh_A          106 RLE------------LVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTG  164 (172)
T ss_dssp             CCC------------GGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHT
T ss_pred             ccc------------HHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhC
Confidence            223            33447 789999999999999999999999999999999999999999999987654

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.63  E-value=5e-15  Score=137.79  Aligned_cols=139  Identities=17%  Similarity=0.242  Sum_probs=103.7

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHHHHhcccc--ccc------------
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAKDKAY--AHI------------  352 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~--g~lvGivt~~Di~~~~~~~~~--~~l------------  352 (429)
                      .++++|.++++++.+++++.+|.++|.+++++++||||++  ++++|+||++||++++.....  ...            
T Consensus        14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~   93 (250)
T 2d4z_A           14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEADEEGR   93 (250)
T ss_dssp             BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBCCC--
T ss_pred             ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccccccc
Confidence            5778899999999999999999999999999999999863  689999999999976542210  000            


Q ss_pred             ----------------cccc---------------------------------------------------------ccH
Q 014157          353 ----------------NLSE---------------------------------------------------------MTI  359 (429)
Q Consensus       353 ----------------~l~~---------------------------------------------------------~~v  359 (429)
                                      .+.+                                                         ++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  173 (250)
T 2d4z_A           94 NGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEEMLTL  173 (250)
T ss_dssp             -------------------------------------------------------------------------CCSCCBH
T ss_pred             ccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccccccCh
Confidence                            0000                                                         000


Q ss_pred             HHHH-----hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          360 HQAL-----QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       360 ~~~l-----~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                      .+..     ...........+|...++++.++++|.+|..+|...|++++||++  .|+|+||||+.||++++.+
T Consensus       174 ~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~--~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          174 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE--CCEEEEEEEHHHHHHHHHH
Confidence            0000     000000000125788899999999999999999999999999999  6999999999999999864

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.63  E-value=9.7e-16  Score=135.80  Aligned_cols=124  Identities=13%  Similarity=0.243  Sum_probs=100.3

Q ss_pred             cCCCCCCC----ceee--cCCCCHHHHHHHHHhcCCCEEEEE--CCCCcEEEEEeHHHHHHHHhccccccc---------
Q 014157          290 IGEPNRRP----LAML--RPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHI---------  352 (429)
Q Consensus       290 v~~~~~~~----~~~v--~~~~sl~~a~~~m~~~~~~~lpVv--d~~g~lvGivt~~Di~~~~~~~~~~~l---------  352 (429)
                      ++++|.+.    ++++  .+++++.+|++.|.+++++++||+  |++|+++|+||..|+++..........         
T Consensus        13 v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~~   92 (185)
T 2j9l_A           13 AMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIY   92 (185)
T ss_dssp             HHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEE
T ss_pred             HHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccccceee
Confidence            44446665    7788  999999999999999999999999  788999999999999976543210000         


Q ss_pred             -----------ccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHH
Q 014157          353 -----------NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLS  421 (429)
Q Consensus       353 -----------~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~  421 (429)
                                 .....++.+             +|.+++.+|.+++++.+|++.|.+++++++||+|  +|+++|+||+.
T Consensus        93 ~~~~~~~~~~~~~~~~~v~~-------------im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~g~~vGiit~~  157 (185)
T 2j9l_A           93 FTEHSPPLPPYTPPTLKLRN-------------ILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKK  157 (185)
T ss_dssp             CSSSCCCCCTTCCCCEECGG-------------GEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHH
T ss_pred             cccCCcccccccccCccHHH-------------hhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE--CCEEEEEEEHH
Confidence                       011233443             4567899999999999999999999999999999  69999999999


Q ss_pred             HHHHHhh
Q 014157          422 DIFKFLL  428 (429)
Q Consensus       422 Dil~~l~  428 (429)
                      ||++++.
T Consensus       158 dll~~l~  164 (185)
T 2j9l_A          158 DVLKHIA  164 (185)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.63  E-value=2.4e-15  Score=123.81  Aligned_cols=116  Identities=20%  Similarity=0.335  Sum_probs=100.0

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      ++|.++++++.+++++.+|++.|.+++.+.+||+|   +++   +++|++|..|+++++....           .+    
T Consensus         5 ~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~G~vt~~dl~~~~~~~~-----------~~----   63 (122)
T 3kpb_A            5 DILSKPPITAHSNISIMEAAKILIKHNINHLPIVD---EHG---KLVGIITSWDIAKALAQNK-----------KT----   63 (122)
T ss_dssp             HHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEEC---TTS---BEEEEECHHHHHHHHHTTC-----------CB----
T ss_pred             HhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHHHHHHhcc-----------cC----
Confidence            35788999999999999999999999999999996   456   8999999999998765421           12    


Q ss_pred             cCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          282 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       282 ~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                              ++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|+++.+..
T Consensus        64 --------v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           64 --------IEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             --------GGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             --------HHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence                    333477788999999999999999999999999999988999999999999987643

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.63  E-value=4.8e-15  Score=126.68  Aligned_cols=120  Identities=12%  Similarity=0.149  Sum_probs=101.6

Q ss_pred             CCCccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCC
Q 014157          199 SHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL  276 (429)
Q Consensus       199 ~~g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~  276 (429)
                      .++++|.+  +++++.+++++.+|++.|.+++++++||++  .+.+   +++|++|.+|+++.+....          ..
T Consensus        24 ~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~~----------~~   88 (148)
T 3lv9_A           24 KIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCR--KNKD---DILGFVHIRDLYNQKINEN----------KI   88 (148)
T ss_dssp             BGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEES--SSTT---SEEEEEEHHHHHHHHHHHS----------CC
T ss_pred             CHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHhcCC----------Cc
Confidence            44567887  899999999999999999999999999996  2225   7999999999998775431          12


Q ss_pred             ccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          277 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       277 ~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      +            ++++| +++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus        89 ~------------v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           89 E------------LEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             C------------GGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             c------------HHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            2            33447 688999999999999999999999999999999999999999999986543

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.60  E-value=3.3e-15  Score=129.28  Aligned_cols=119  Identities=16%  Similarity=0.204  Sum_probs=96.9

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCc
Q 014157          205 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  284 (429)
Q Consensus       205 ~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  284 (429)
                      ..+++++.+++|+.+|+.+|.+++++++||+|   +++   +++|++|.+|+++++.......   ......+       
T Consensus        24 ~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd---~~~---~lvGiit~~Di~~~~~~~~~~~---~~~~~~~-------   87 (156)
T 3k6e_A           24 AKNLAVLIDTHNADHATLLLSQMTYTRVPVVT---DEK---QFVGTIGLRDIMAYQMEHDLSQ---EIMADTD-------   87 (156)
T ss_dssp             TTSSCCEETTSBHHHHHHHHTTSSSSEEEEEC---C-C---BEEEEEEHHHHHHHHHHHTCCH---HHHTTSB-------
T ss_pred             hhHeEEECCcCCHHHHHHHHHHcCCcEEEEEc---CCC---cEEEEEEecchhhhhhhccccc---ccccccC-------
Confidence            36899999999999999999999999999996   446   7999999999998876542110   0111222       


Q ss_pred             ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          285 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       285 ~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                           ++++|.+++.++.+++++.+|+++|.+++  .+||+|++|+++|+||.+||++.+..
T Consensus        88 -----v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           88 -----IVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             -----GGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             -----HHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHH
Confidence                 44458889999999999999999998765  49999999999999999999986643

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.60  E-value=2.7e-15  Score=124.89  Aligned_cols=120  Identities=19%  Similarity=0.255  Sum_probs=100.4

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++++|.+++.++.+++++.+|++.|.+++.+.+||+|   + +   +++|++|.+|+++.+....        ....   
T Consensus         7 v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~-~---~~~Givt~~dl~~~~~~~~--------~~~~---   68 (128)
T 3gby_A            7 FSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLD---G-E---RYLGMVHLSRLLEGRKGWP--------TVKE---   68 (128)
T ss_dssp             GGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEE---T-T---EEEEEEEHHHHHTTCSSSC--------CTTC---
T ss_pred             HHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEE---C-C---EEEEEEEHHHHHHHHhhCC--------cccC---
Confidence            3557899999999999999999999999999999996   3 6   8999999999986432110        0011   


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                               .++++|.+++.++.+++++.+|++.|.+++.+++||+|++|+++|++|..|+++.+..
T Consensus        69 ---------~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           69 ---------KLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             ---------BCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             ---------cHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence                     2344477789999999999999999999999999999999999999999999987643

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.60  E-value=7.5e-15  Score=122.63  Aligned_cols=120  Identities=10%  Similarity=0.131  Sum_probs=98.9

Q ss_pred             CCCccCC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCC
Q 014157          199 SHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL  276 (429)
Q Consensus       199 ~~g~~~~--~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~  276 (429)
                      .++++|.  .+++++.+++++.+|++.|.+++++++||++  .+.+   +++|++|.+|+++.+....         ...
T Consensus         7 ~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~~Givt~~dl~~~~~~~~---------~~~   72 (130)
T 3i8n_A            7 PVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYS--EQKD---NIIGFVHRLELFKMQQSGS---------GQK   72 (130)
T ss_dssp             CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEES--SSTT---CEEEECCHHHHHHHHHTTT---------TTS
T ss_pred             CHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---cEEEEEEHHHHHHHHhcCC---------CcC
Confidence            3456777  5677999999999999999999999999996  2325   7999999999998765421         122


Q ss_pred             ccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          277 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       277 ~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                      +++++            | +++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        73 ~v~~~------------m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           73 QLGAV------------M-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             BHHHH------------S-EECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             CHHHH------------h-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence            33333            5 35789999999999999999999999999999999999999999997653

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.58  E-value=1.8e-14  Score=120.44  Aligned_cols=120  Identities=21%  Similarity=0.320  Sum_probs=101.7

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++++|.++++++.+++++.+|++.|.+++.+.+||+|    ++   +++|++|..|+++++.....        ...+  
T Consensus         6 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~--------~~~~--   68 (133)
T 2ef7_A            6 VKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LETK--   68 (133)
T ss_dssp             GGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTCB--
T ss_pred             HHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEcHHHHHHHHhcCCC--------cccC--
Confidence            3557888999999999999999999999999999995    35   79999999999987664311        1122  


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                                ++++|.+++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++....
T Consensus        69 ----------v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           69 ----------AEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             ----------GGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ----------HHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                      344477788999999999999999999999999999989999999999999986654

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.58  E-value=4e-15  Score=141.74  Aligned_cols=116  Identities=15%  Similarity=0.245  Sum_probs=102.5

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhc-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  363 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l  363 (429)
                      +++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|+||.+|++...          ...++.++|
T Consensus       138 ~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~----------~~~~v~~im  207 (286)
T 2oux_A          138 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIADIL  207 (286)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHHHS
T ss_pred             HHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC----------CCCcHHHHc
Confidence            34555888999999999999999999987     889999999999999999999997531          146788876


Q ss_pred             hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          364 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                   .+++++|++++++.+|++.|.+++.+++|||| ++|+++|+||..||++++.
T Consensus       208 -------------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          208 -------------NERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             -------------BSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             -------------CCCCeeecCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHHHHH
Confidence                         55789999999999999999999999999999 5899999999999998864

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.58  E-value=6.1e-15  Score=123.05  Aligned_cols=115  Identities=11%  Similarity=0.182  Sum_probs=94.1

Q ss_pred             ccCC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          202 KAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       202 ~~~~--~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++|.  .+++++.+++++.+|++.|.+++++++||++  .+.+   +++|++|.+|+++.+..           ...++ 
T Consensus         9 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~~Givt~~dl~~~~~~-----------~~~~v-   71 (129)
T 3jtf_A            9 DIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYE--DDRD---NIIGILLAKDLLRYMLE-----------PALDI-   71 (129)
T ss_dssp             HHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEES--SSTT---CEEEEEEGGGGGGGGTC-----------TTSCG-
T ss_pred             HhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCC---cEEEEEEHHHHHhHhcc-----------CCcCH-
Confidence            3566  6789999999999999999999999999996  2235   79999999999864321           01222 


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                                 +++|. ++.++.+++++.+|+++|.+++.+.+||+|++|+++|++|..|+++.+.
T Consensus        72 -----------~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           72 -----------RSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             -----------GGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHH
T ss_pred             -----------HHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                       33354 4789999999999999999999999999998899999999999998654

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.58  E-value=6.3e-15  Score=123.25  Aligned_cols=119  Identities=12%  Similarity=0.132  Sum_probs=96.9

Q ss_pred             cCC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          203 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       203 ~~~--~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +|.  ++++++.+++++.+|++.|.+++++++||++  .+.+   +++|++|.+|+++.+....       .+...+++ 
T Consensus         7 iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~--~~~~---~lvGivt~~dl~~~~~~~~-------~~~~~~v~-   73 (130)
T 3hf7_A            7 IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYR--DSLD---DAISMLRVREAYRLMTEKK-------EFTKEIML-   73 (130)
T ss_dssp             HSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEES--SSGG---GEEEEEEHHHHHHHHTSSS-------CCCHHHHH-
T ss_pred             hCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEc--CCCC---cEEEEEEHHHHHHHHhccC-------ccchhhHH-
Confidence            454  4689999999999999999999999999995  2345   7999999999998765321       00112222 


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                                 ++| +++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+..
T Consensus        74 -----------~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g  127 (130)
T 3hf7_A           74 -----------RAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG  127 (130)
T ss_dssp             -----------HHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC
T ss_pred             -----------Hhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhC
Confidence                       335 467899999999999999999999999999999999999999999986643

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.58  E-value=1.4e-14  Score=119.75  Aligned_cols=118  Identities=16%  Similarity=0.275  Sum_probs=99.1

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      ++|.++++++.+++++.+|++.|.+++.+.+||+|    ++   +++|++|.+|+++++.....       ....+++++
T Consensus         5 ~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~G~it~~dl~~~~~~~~~-------~~~~~v~~~   70 (125)
T 1pbj_A            5 DVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVWEV   70 (125)
T ss_dssp             HHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHHHH
T ss_pred             HhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe----CC---eeEEEEeHHHHHHHHhcCCc-------ccccCHHHH
Confidence            35788999999999999999999999999999995    35   79999999999987664311       112233333


Q ss_pred             cCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          282 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       282 ~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                                  |.+++.++.+++++.++++.|.+++.+++||+|+ |+++|++|.+|+++.+..
T Consensus        71 ------------m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           71 ------------MERDLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             ------------CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             ------------cCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence                        7778999999999999999999999999999997 999999999999987644

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.57  E-value=1.8e-14  Score=124.97  Aligned_cols=127  Identities=18%  Similarity=0.245  Sum_probs=102.2

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCC-CCcccCCcc
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-SLPILKLPI  278 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~-~~~~l~~~v  278 (429)
                      ++++|.++++++.+++|+.+|+++|.+++++.+||+|   +++   +++|++|..|+++++...+..... .......  
T Consensus         7 v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd---~~~---~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~--   78 (160)
T 2o16_A            7 VEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD---ANK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFET--   78 (160)
T ss_dssp             GGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHHHCC---------CCC--
T ss_pred             HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEeHHHHHHHHHHhhcccccccchhccc--
Confidence            3557888999999999999999999999999999996   456   799999999999887654321100 0001112  


Q ss_pred             ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          279 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       279 ~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                                .+.++|.++++++.+++++.+|++.|.+++.+++||+|+ |+++|+||..||++...
T Consensus        79 ----------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           79 ----------PLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             ----------BHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHH
T ss_pred             ----------CHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHH
Confidence                      244457788999999999999999999999999999997 99999999999997654

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.57  E-value=6.7e-15  Score=139.60  Aligned_cols=115  Identities=17%  Similarity=0.280  Sum_probs=100.2

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhc-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHh
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQ  364 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~  364 (429)
                      ++++|.++++++.+++++.+|++.|.++     +++++||+|++|+++|+||.+|++...          ...++.++| 
T Consensus       137 v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~----------~~~~v~~im-  205 (278)
T 2yvy_A          137 AGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAEIM-  205 (278)
T ss_dssp             GGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHSC----------TTCBSTTTS-
T ss_pred             HHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcCC----------CCCcHHHHh-
Confidence            4555888999999999999999999987     789999999899999999999997531          134566554 


Q ss_pred             cCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          365 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                  .+++++|++++++.+|++.|.+++.+.+|||| ++|+++|+||..||++.+.
T Consensus       206 ------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          206 ------------NPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             ------------BSSCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHC-
T ss_pred             ------------CCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEe-CCCeEEEEEEHHHHHHHHH
Confidence                        56899999999999999999999999999999 5899999999999998864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.57  E-value=4.5e-15  Score=125.10  Aligned_cols=118  Identities=8%  Similarity=0.108  Sum_probs=95.6

Q ss_pred             ccCC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          202 KAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       202 ~~~~--~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++|.  ++++++.+++++.+|++.|.+++++++||++  .+.+   +++|++|.+|+++.+...        .....+  
T Consensus         7 ~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd--~~~~---~~vGivt~~dl~~~~~~~--------~~~~~~--   71 (136)
T 3lfr_A            7 DIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIG--ESHD---DVLGVLLAKDLLPLILKA--------DGDSDD--   71 (136)
T ss_dssp             HHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGGGSS--------SGGGCC--
T ss_pred             hccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHHhc--------cCCCcC--
Confidence            3466  6789999999999999999999999999996  2225   799999999998754311        011122  


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                                ++++|.+ +.++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++.+.
T Consensus        72 ----------v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           72 ----------VKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             ----------GGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred             ----------HHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence                      3344654 889999999999999999999999999999999999999999997543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.57  E-value=1.8e-14  Score=121.20  Aligned_cols=120  Identities=17%  Similarity=0.357  Sum_probs=99.3

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhH-HHHHHhhcccCCCCCcccCCcc
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI-LKCVCRYFRHCSSSLPILKLPI  278 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dI-l~~l~~~~~~~~~~~~~l~~~v  278 (429)
                      ++++|.++++++.+++++.+|++.|.+++.+.+||+|   +++   +++|++|..++ ++++....        ....++
T Consensus        10 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~--------~~~~~v   75 (138)
T 2p9m_A           10 VKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVID---DEN---KVIGIVTTTDIGYNLIRDKY--------TLETTI   75 (138)
T ss_dssp             GGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEEC---TTC---BEEEEEEHHHHHHHHTTTCC--------CSSCBH
T ss_pred             HHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEEC---CCC---eEEEEEEHHHHHHHHHhhcc--------cCCcCH
Confidence            3456888999999999999999999999999999996   346   79999999999 77554210        112233


Q ss_pred             ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcC-----CCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          279 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       279 ~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~-----~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                      +            ++|.+++.++.+++++.++++.|.+++     .+++||+|++|+++|++|..|+++...
T Consensus        76 ~------------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           76 G------------DVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             H------------HHSCSSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             H------------HHhCCCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            3            337778899999999999999999999     999999998999999999999997654

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.56  E-value=3.8e-14  Score=119.89  Aligned_cols=119  Identities=17%  Similarity=0.268  Sum_probs=98.6

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +++|.++++++.+++++.+|++.|.+++++.+||+|.  +.  ..+++|++|..|+++++....        ....+   
T Consensus         8 ~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~--~~~~~Givt~~dl~~~~~~~~--------~~~~~---   72 (141)
T 2rih_A            8 SELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR--DN--PKRPVAVVSERDILRAVAQRL--------DLDGP---   72 (141)
T ss_dssp             GGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET--TE--EEEEEEEEEHHHHHHHHHTTC--------CTTSB---
T ss_pred             HHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC--CC--cceeEEEEEHHHHHHHHhcCC--------CCCCC---
Confidence            4578889999999999999999999999999999972  21  015999999999998765421        01223   


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                               ++++|.+++.++.++ ++.+|++.|.+++.+.+||+|++|+++|++|.+|+++..
T Consensus        73 ---------v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           73 ---------AMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             ---------SGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             ---------HHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHH
Confidence                     334477789999999 999999999999999999999899999999999998643

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.56  E-value=5.1e-15  Score=123.11  Aligned_cols=116  Identities=12%  Similarity=0.150  Sum_probs=94.5

Q ss_pred             ccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          202 KAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       202 ~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++|.+  +++++.+++++.+|++.|.+++++++||++  .+.+   +++|++|.+|+++.+...         ....+++
T Consensus         7 diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~---~~vGivt~~dl~~~~~~~---------~~~~~v~   72 (127)
T 3nqr_A            7 DIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKD---HIEGILMAKDLLPFMRSD---------AEAFSMD   72 (127)
T ss_dssp             HHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGGSTT---------CCCCCHH
T ss_pred             HhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHhcc---------CCCCCHH
Confidence            34664  489999999999999999999999999996  2325   799999999998654321         0122333


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                      +            +|. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+
T Consensus        73 ~------------~m~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l  124 (127)
T 3nqr_A           73 K------------VLR-TAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELI  124 (127)
T ss_dssp             H------------HCB-CCCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC
T ss_pred             H------------HcC-CCeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHH
Confidence            3            364 467899999999999999999999999999999999999999998754

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.56  E-value=1.3e-14  Score=124.88  Aligned_cols=118  Identities=10%  Similarity=0.124  Sum_probs=100.0

Q ss_pred             CccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEE-ecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc
Q 014157          201 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPII-HSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP  277 (429)
Q Consensus       201 g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVv-d~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~  277 (429)
                      +++|.+  +++++.+++++.+|++.|.+++++++||+ +.  +.+   +++|++|.+|+++.+....          ..+
T Consensus        23 ~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~--~~~---~lvGivt~~dl~~~~~~~~----------~~~   87 (153)
T 3oco_A           23 SDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADN--DKD---KIIGYAYNYDIVRQARIDD----------KAK   87 (153)
T ss_dssp             HHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETT--EEE---EEEEEEEHHHHHHHHHHHT----------TSB
T ss_pred             eeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECC--CCC---cEEEEEEHHHHHhHHhcCC----------CCc
Confidence            345765  89999999999999999999999999999 41  235   7999999999998776431          122


Q ss_pred             cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          278 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       278 v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                                  ++++| +++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus        88 ------------v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           88 ------------ISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             ------------GGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred             ------------HHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence                        33447 789999999999999999999999999999999999999999999987654

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.56  E-value=3.6e-14  Score=119.44  Aligned_cols=121  Identities=15%  Similarity=0.300  Sum_probs=100.2

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++++|.++++++.+++++.+|++.|.+++++.+||+|   +++   +++|++|..|+++.+...  .     .....   
T Consensus         9 v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~--~-----~~~~~---   72 (138)
T 2yzi_A            9 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN---DDG---NVVGFFTKSDIIRRVIVP--G-----LPYDI---   72 (138)
T ss_dssp             GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHTTTT--C-----CCTTS---
T ss_pred             HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEeHHHHHHHHHhc--C-----CcccC---
Confidence            4557889999999999999999999999999999996   346   799999999997432211  0     01112   


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                               .+.++|.+++.++.+++++.+|++.|.+++++++ |+|++|+++|++|..|+++....
T Consensus        73 ---------~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~  129 (138)
T 2yzi_A           73 ---------PVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRR  129 (138)
T ss_dssp             ---------BGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHC
T ss_pred             ---------CHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHH
Confidence                     2444577889999999999999999999999999 99988999999999999987655

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.56  E-value=2.7e-14  Score=123.64  Aligned_cols=121  Identities=16%  Similarity=0.272  Sum_probs=99.3

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      ++++|.++ +++.+++++.+|++.|.+++++.+||+|   +++   +++|++|..||++.+....       .....+  
T Consensus        19 v~~im~~~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~--   82 (159)
T 3fv6_A           19 VKDFQSIP-VVIHENVSVYDAICTMFLEDVGTLFVVD---RDA---VLVGVLSRKDLLRASIGQQ-------ELTSVP--   82 (159)
T ss_dssp             GGGSCBCC-CEEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHHTSCS-------CTTTCB--
T ss_pred             HHHHcCCC-EEECCCCcHHHHHHHHHHCCCCEEEEEc---CCC---cEEEEEeHHHHHHHhhccC-------cccCcC--
Confidence            34567774 5999999999999999999999999996   456   7999999999998764321       011222  


Q ss_pred             cccCcccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCC---cEEEEEeHHHHHHHHhc
Q 014157          280 AIPVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDND---SLLDIYCRSDITALAKD  346 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g---~lvGivt~~Di~~~~~~  346 (429)
                                ++++|.+  +++++.+++++.+|++.|.+++++++||+|++|   +++|+||..||++.+..
T Consensus        83 ----------v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           83 ----------VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             ----------GGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             ----------HHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence                      3444766  789999999999999999999999999999888   99999999999986643

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.56  E-value=1.9e-14  Score=125.43  Aligned_cols=116  Identities=15%  Similarity=0.275  Sum_probs=98.6

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++.+++++.+|++.|.+++++.+||+|   +++   +++|++|..||++.+......      ....+        
T Consensus        35 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~~------~~~~~--------   94 (165)
T 3fhm_A           35 RDVVTVGPDVSIGEAAGTLHAHKIGAVVVTD---ADG---VVLGIFTERDLVKAVAGQGAA------SLQQS--------   94 (165)
T ss_dssp             SCCCEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHHHHHGGG------GGTSB--------
T ss_pred             CCCeEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHHHhcCCc------cccCC--------
Confidence            4789999999999999999999999999996   456   799999999999888754211      11223        


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                          ++++|.++++++.+++++.+|++.|.+++++++||+|+ |+++|+||..||++....
T Consensus        95 ----v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           95 ----VSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             ----GGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             ----HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence                34447778999999999999999999999999999998 999999999999987654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.55  E-value=6e-15  Score=126.04  Aligned_cols=135  Identities=16%  Similarity=0.270  Sum_probs=100.2

Q ss_pred             CCccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc
Q 014157          200 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP  277 (429)
Q Consensus       200 ~g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~  277 (429)
                      ++++|.+  +++++.+++++.+|++.|.+++++.+||+|   +++   +++|++|..|+++++......     ..+. .
T Consensus         7 v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~G~vt~~dl~~~~~~~~~~-----~~~~-~   74 (152)
T 4gqw_A            7 VGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVID---EDW---KLVGLVSDYDLLALDSGDSTW-----KTFN-A   74 (152)
T ss_dssp             GGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEEC---TTC---BEEEEEEHHHHTTCC----CC-----HHHH-H
T ss_pred             hhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEe---CCC---eEEEEEEHHHHHHhhcccCcc-----cchH-H
Confidence            3456777  899999999999999999999999999996   446   799999999998643211000     0000 0


Q ss_pred             cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          278 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       278 v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      ............+.++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||.+||++....
T Consensus        75 ~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           75 VQKLLSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             HHTC-----CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            000000011123444577788999999999999999999999999999999999999999999987654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.55  E-value=2e-14  Score=122.97  Aligned_cols=122  Identities=15%  Similarity=0.172  Sum_probs=97.9

Q ss_pred             cCC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          203 AFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       203 ~~~--~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +|.  .+++++.+++++.+|++.|.+++++.+||+|   +++   +++|++|..|+++++........  ....      
T Consensus        20 im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd---~~~---~~~Givt~~dl~~~~~~~~~~~~--~~~~------   85 (150)
T 3lqn_A           20 LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLD---PMY---KLHGLISTAMILDGILGLERIEF--ERLE------   85 (150)
T ss_dssp             HSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHTBCSSSBCG--GGGG------
T ss_pred             cccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEEC---CCC---CEEEEEEHHHHHHHHHhhcccch--hHHh------
Confidence            355  4689999999999999999999999999996   456   79999999999987643211000  0001      


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                            ...++++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|+||..|+++.+..
T Consensus        86 ------~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           86 ------EMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             ------GCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ------cCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHH
Confidence                  123455588889999999999999999999886  9999999999999999999987654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.55  E-value=2.9e-14  Score=123.08  Aligned_cols=117  Identities=15%  Similarity=0.171  Sum_probs=96.4

Q ss_pred             cCCCCccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCccc
Q 014157          197 IDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL  274 (429)
Q Consensus       197 ~~~~g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l  274 (429)
                      ...++++|.+  +++++.+++++.+|++.|.+++++++||++  .+.+   +++|++|.+|+++.+...          .
T Consensus        37 ~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~dl~~~~~~~----------~  101 (156)
T 3oi8_A           37 DLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIG--EDKD---EVLGILHAKDLLKYMFNP----------E  101 (156)
T ss_dssp             TCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTT---CEEEEEEGGGGGGGSSCG----------G
T ss_pred             CCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCC---cEEEEEEHHHHHHHHHcC----------C
Confidence            4456778886  799999999999999999999999999996  2334   699999999998643211          1


Q ss_pred             CCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 014157          275 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT  341 (429)
Q Consensus       275 ~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~  341 (429)
                      ..++++            +|.+ +.++.+++++.+|++.|.+++.+.+||+|++|+++|+||..|++
T Consensus       102 ~~~v~~------------im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          102 QFHLKS------------ILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             GCCHHH------------HCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             cccHHH------------HcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            223333            3644 88999999999999999999999999999999999999999985

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.55  E-value=6.3e-14  Score=132.86  Aligned_cols=132  Identities=15%  Similarity=0.248  Sum_probs=109.8

Q ss_pred             HHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhc-----CCceeeEEecCCCCCCCCeEEEEEehhhHHH
Q 014157          184 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILK  258 (429)
Q Consensus       184 ~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~-----~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~  258 (429)
                      .........+.++...+|++|.++++++.+++++.+|++.|.++     ++.++||+|   +++   +++|++|.+|++.
T Consensus       121 ~~~~~i~~~l~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd---~~~---~lvGivt~~dll~  194 (278)
T 2yvy_A          121 RTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD---EKG---RLKGVLSLRDLIV  194 (278)
T ss_dssp             HHHHHHHHHHHSCTTBGGGTCBSCCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEEC---TTC---BEEEEEEHHHHHH
T ss_pred             HHHHHHHHHHCCCcchHHhhcCCCceEECCCCcHHHHHHHHHHccCCccceeEEEEEC---CCC---CEEEEEEHHHHhc
Confidence            33344555566778889999999999999999999999999987     789999996   346   7999999999975


Q ss_pred             HHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHH
Q 014157          259 CVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRS  338 (429)
Q Consensus       259 ~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~  338 (429)
                      .             ....            .++++|.++++++.+++++.+|++.|.+++.+.+||+|++|+++|+||..
T Consensus       195 ~-------------~~~~------------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~  249 (278)
T 2yvy_A          195 A-------------DPRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVD  249 (278)
T ss_dssp             S-------------CTTC------------BSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHH
T ss_pred             C-------------CCCC------------cHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHH
Confidence            2             0112            24455878899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 014157          339 DITALAKD  346 (429)
Q Consensus       339 Di~~~~~~  346 (429)
                      |++..+..
T Consensus       250 Dil~~i~~  257 (278)
T 2yvy_A          250 DVLDVLEA  257 (278)
T ss_dssp             HHHHHC--
T ss_pred             HHHHHHHH
Confidence            99987654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.55  E-value=3.1e-14  Score=121.79  Aligned_cols=117  Identities=16%  Similarity=0.231  Sum_probs=98.2

Q ss_pred             CCccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc
Q 014157          200 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP  277 (429)
Q Consensus       200 ~g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~  277 (429)
                      ++++|.+  +++++.+++++.+|++.|.+++++.+||+|   +++   +++|++|..|+++.+....       .....+
T Consensus        30 v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~-------~~~~~~   96 (149)
T 3k2v_A           30 VNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICD---DDM---NIIGIFTDGDLRRVFDTGV-------DMRDAS   96 (149)
T ss_dssp             GGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEEC---TTC---BEEEEEEHHHHHHHHCSSS-------CCTTCB
T ss_pred             HHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEEC---CCC---cEEEEecHHHHHHHHhcCC-------CcccCc
Confidence            3457888  899999999999999999999999999996   456   7999999999998765321       112333


Q ss_pred             cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 014157          278 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA  342 (429)
Q Consensus       278 v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~  342 (429)
                      ++++            |.+++.++.+++++.+|++.|.+++++.+||+|++ +++|+||..||++
T Consensus        97 v~~~------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           97 IADV------------MTRGGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             HHHH------------SEESCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             HHHH------------cCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            3333            77788999999999999999999999999999965 9999999999863

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.54  E-value=9.4e-14  Score=122.17  Aligned_cols=122  Identities=7%  Similarity=0.101  Sum_probs=101.0

Q ss_pred             ccCCCCccCC--CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcc
Q 014157          196 QIDSHGKAFP--RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI  273 (429)
Q Consensus       196 ~~~~~g~~~~--~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~  273 (429)
                      ....++++|.  ++++++.+++++.+|++.|.+++++++||++  .+.+   +++|++|.+|+++.+....         
T Consensus        34 ~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~---~lvGivt~~Dl~~~~~~~~---------   99 (173)
T 3ocm_A           34 AERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCR--GSLD---EVVGIGRAKDLVADLITEG---------   99 (173)
T ss_dssp             TTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEES--SSTT---SEEEEEEHHHHHHHHHHHS---------
T ss_pred             CCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEe--CCCC---CEEEEEEHHHHHHHHhcCC---------
Confidence            3445677886  4789999999999999999999999999996  2335   7999999999998765421         


Q ss_pred             cCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          274 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       274 l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                       ..+++              |.++++++.+++++.+|+++|.+++.+.+||+|++|+++|+||..||+..+..
T Consensus       100 -~~~v~--------------~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~  157 (173)
T 3ocm_A          100 -RVRRN--------------RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAG  157 (173)
T ss_dssp             -SCCGG--------------GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHC
T ss_pred             -cchhH--------------hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhC
Confidence             11222              12467899999999999999999999999999999999999999999987764

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.54  E-value=5.3e-14  Score=119.07  Aligned_cols=119  Identities=20%  Similarity=0.231  Sum_probs=96.5

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  282 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  282 (429)
                      +|.++++++.+++++.+|++.|.+++++.+||+|   +++   +++|++|..|+++++.....      .....+++++ 
T Consensus        16 ~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~------~~~~~~v~~~-   82 (144)
T 2nyc_A           16 ITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENG---YLINVYEAYDVLGLIKGGIY------NDLSLSVGEA-   82 (144)
T ss_dssp             CBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHTC----------CCSBHHHH-
T ss_pred             CCCCCceEECCCCcHHHHHHHHHHcCcceeeEEc---CCC---cEEEEEcHHHHHHHhccccc------ccCCccHHHH-
Confidence            5778999999999999999999999999999996   346   79999999999987653210      0112333333 


Q ss_pred             CcccccccCCCCCC------CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          283 VGTWVPKIGEPNRR------PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       283 i~~~~~~v~~~~~~------~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                                 |.+      ++.++.+++++.+|++.|.+++.+++||+|++|+++|+||.+|+++.+.
T Consensus        83 -----------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           83 -----------LMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             -----------HHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             -----------HhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHH
Confidence                       332      5789999999999999999999999999998899999999999998654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.53  E-value=5.3e-14  Score=124.81  Aligned_cols=121  Identities=14%  Similarity=0.176  Sum_probs=100.8

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +++|.++++++.+++++.+|+++|.+++++++||++   +++   +++|++|.+||++++.....      .....    
T Consensus        12 ~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd---~~g---~~vGivt~~dl~~~~~~~~~------~~~~~----   75 (184)
T 1pvm_A           12 EKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKD---DNG---NDVGLLSERSIIKRFIPRNK------KPDEV----   75 (184)
T ss_dssp             GGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEEC---TTS---CEEEEEEHHHHHHHTGGGCC------CGGGS----
T ss_pred             HHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEEeHHHHHHHHhhccc------CcccC----
Confidence            456889999999999999999999999999999996   346   79999999999986543200      00111    


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                              .++++|.+++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||..||++...
T Consensus        76 --------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           76 --------PIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             --------BGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             --------CHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence                    344557788999999999999999999999999999998899999999999986543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.53  E-value=1.2e-13  Score=119.07  Aligned_cols=134  Identities=13%  Similarity=0.192  Sum_probs=101.3

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCce-eeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVAT-VPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC  279 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~-lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~  279 (429)
                      +++|.++++++.+++++.+|++.|.+++++. +||+|.    +   +++|++|..|+++++...+.........+.... 
T Consensus        19 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~----~---~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~-   90 (157)
T 1o50_A           19 CKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD----N---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSM-   90 (157)
T ss_dssp             TTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET----T---EEEEEEEHHHHHHHHHHHHHCCCC-------CC-
T ss_pred             hhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC----C---EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHH-
Confidence            4578999999999999999999999999999 999962    2   599999999999876532100000000000000 


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                         .......++++|.+ ++++.+++++.+|++.|.+++++++||+|++|+++|+||..||++....
T Consensus        91 ---~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           91 ---KRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             ---CCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             ---HHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence               00111234555888 9999999999999999999999999999988999999999999986654

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.53  E-value=8.5e-14  Score=129.32  Aligned_cols=210  Identities=12%  Similarity=0.164  Sum_probs=127.4

Q ss_pred             ccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhH
Q 014157          104 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  183 (429)
Q Consensus       104 ~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i  183 (429)
                      .++.|+|-  .++++++++.++.+|++.|.++++.++||+|.+ ++++|++|..|+++.+.....  ..  .......+.
T Consensus         7 ~~v~~im~--~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~--~~--~~~~~~~~~   79 (245)
T 3l2b_A            7 LKVEDLEM--DKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWD--SN--ILAKSATSL   79 (245)
T ss_dssp             CBGGGSCC--BCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCC--TT--HHHHTTCCH
T ss_pred             CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhh--hh--hhhhccCCH
Confidence            45667773  468899999999999999999999999999964 789999999999987742111  00  000111112


Q ss_pred             HHHHHhhhhh-hcccC-----------------CC-CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCC--
Q 014157          184 SAWKEGKAYL-NRQID-----------------SH-GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDG--  242 (429)
Q Consensus       184 ~~~~~~~~~~-~~~~~-----------------~~-g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~--  242 (429)
                      ..+.+..... -....                 .. .......++.+.   .-.++...+.+.++..+++........  
T Consensus        80 ~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvg---dr~~~~~~~i~~~~~~liit~~~~~~~~v  156 (245)
T 3l2b_A           80 DNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAG---DRAEIQAELIELKVSLLIVTGGHTPSKEI  156 (245)
T ss_dssp             HHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEEC---SCHHHHHHHHHTTCSEEEECTTCCCCHHH
T ss_pred             HHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEEC---CCHHHHHHHHHcCCCEEEECCCCCCCHHH
Confidence            2221111000 00000                 00 001122333331   237888899999999888874211000  


Q ss_pred             ----CCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCC-CCceeecCCCCHHHHHHHHHhc
Q 014157          243 ----SFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLVQA  317 (429)
Q Consensus       243 ----~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~-~~~~~v~~~~sl~~a~~~m~~~  317 (429)
                          ....+-.+.|..|.........         ...            .++++|. +++.++.+++++.+|+++|.++
T Consensus       157 ~~~a~~~~~~~i~t~~d~~~~~~~~~---------~~~------------~v~~im~~~~~~~~~~~~~~~~~~~~m~~~  215 (245)
T 3l2b_A          157 IELAKKNNITVITTPHDSFTASRLIV---------QSL------------PVDYVMTKDNLVAVSTDDLVEDVKVTMSET  215 (245)
T ss_dssp             HHHHHHHTCEEEECSSCHHHHHHHGG---------GGS------------BHHHHSBCTTCCCEETTSBHHHHHHHHHHH
T ss_pred             HHHHHHcCCeEEEeCCChHHHHHHHh---------cCC------------ceeeEecCCccEEECCCCcHHHHHHHHHhc
Confidence                0001334444444433221110         112            2444587 7899999999999999999999


Q ss_pred             CCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          318 QVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       318 ~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                      +++++||+|++|+++|++|.+|+++..
T Consensus       216 ~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          216 RYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             CCSEEEEECTTCBEEEEEECC------
T ss_pred             CCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            999999999999999999999998754

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.52  E-value=5.9e-14  Score=117.73  Aligned_cols=115  Identities=16%  Similarity=0.325  Sum_probs=96.0

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++.+++++.+|++.|.+++.+.+||+|    ++   +++|++|..|+++.+.....      .....         
T Consensus        17 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd----~~---~~~Givt~~dl~~~~~~~~~------~~~~~---------   74 (135)
T 2rc3_A           17 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDT---------   74 (135)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGS---------
T ss_pred             CCcEEECCCCcHHHHHHHHHhcCCCEEEEEE----CC---EEEEEEehHHHHHHHHHcCC------CcccC---------
Confidence            7899999999999999999999999999995    35   79999999999864432100      01112         


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                         .++++|.+++.++.+++++.+|++.|.+++++++||+| +|+++|++|.+|+++....
T Consensus        75 ---~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           75 ---QVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             ---BGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ---CHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence               34455778899999999999999999999999999999 7999999999999986644

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.52  E-value=6.1e-14  Score=133.52  Aligned_cols=127  Identities=16%  Similarity=0.208  Sum_probs=107.5

Q ss_pred             hhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhc-----CCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhh
Q 014157          189 GKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  263 (429)
Q Consensus       189 ~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~-----~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~  263 (429)
                      +...+.++...+|++|.++++++.+++++.+|++.|.++     +++++||+|   +++   +++|++|.+|++..    
T Consensus       128 i~~ll~~~~~~v~~iM~~~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd---~~~---~lvGivt~~dll~~----  197 (286)
T 2oux_A          128 IKELLHYEDETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD---QEN---HLVGVISLRDLIVN----  197 (286)
T ss_dssp             HHHHTTSCTTBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEEC---TTC---BEEEEEEHHHHTTS----
T ss_pred             HHHHhcCChHHHHHhCCCCceEECCCCcHHHHHHHHHHcccCccceeEEEEEc---CCC---eEEEEEEHHHHHcC----
Confidence            334456777888999999999999999999999999998     788999996   346   79999999999742    


Q ss_pred             cccCCCCCcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          264 FRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       264 ~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                               ....+++            ++|.++++++.+++++.+|++.|.+++++++||+|++|+++|+||..|++..
T Consensus       198 ---------~~~~~v~------------~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~  256 (286)
T 2oux_A          198 ---------DDDTLIA------------DILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDV  256 (286)
T ss_dssp             ---------CTTSBHH------------HHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             ---------CCCCcHH------------HHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence                     0122333            3477789999999999999999999999999999999999999999999987


Q ss_pred             Hhc
Q 014157          344 AKD  346 (429)
Q Consensus       344 ~~~  346 (429)
                      +..
T Consensus       257 i~~  259 (286)
T 2oux_A          257 IDD  259 (286)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.51  E-value=1.5e-14  Score=120.97  Aligned_cols=116  Identities=19%  Similarity=0.318  Sum_probs=95.8

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHH-HHHhhcccCCCCCcccCCccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~-~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      +|.++++++.+++++.+|++.|.+++.+.+||+|   +++   +++|++|.+|+++ ++....       .....+    
T Consensus        13 im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~~----   75 (133)
T 1y5h_A           13 IMNAGVTCVGEHETLTAAAQYMREHDIGALPICG---DDD---RLHGMLTDRDIVIKGLAAGL-------DPNTAT----   75 (133)
T ss_dssp             HSEETCCCEETTSBHHHHHHHHHHHTCSEEEEEC---GGG---BEEEEEEHHHHHHTTGGGTC-------CTTTSB----
T ss_pred             HhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEEC---CCC---eEEEEEeHHHHHHHHHhcCC-------CccccC----
Confidence            4777899999999999999999999999999996   345   7999999999984 433211       011223    


Q ss_pred             cCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          282 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       282 ~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                              ++++|.+++.++.+++++.+|++.|.+++.+++||+|+ |+++|++|.+|+++..
T Consensus        76 --------v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           76 --------AGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             --------HHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             --------HHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence                    33347778999999999999999999999999999997 9999999999998754

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.51  E-value=1.2e-13  Score=118.88  Aligned_cols=125  Identities=15%  Similarity=0.217  Sum_probs=99.8

Q ss_pred             CCccCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc
Q 014157          200 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP  277 (429)
Q Consensus       200 ~g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~  277 (429)
                      ++++|.+  +++++.+++++.+|++.|.+++++++||+|   +++   +++|++|..|+++++......  ......   
T Consensus        13 v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd---~~~---~~~Givt~~dl~~~~~~~~~~--~~~~~~---   81 (157)
T 2emq_A           13 VKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLD---TSY---KLHGLISMTMMMDAILGLERI--EFERLE---   81 (157)
T ss_dssp             STTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEEC---TTC---CEEEEEEHHHHHHHSBCSSSB--CGGGGG---
T ss_pred             HHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEc---CCC---CEEEEeeHHHHHHHHhccccc--chHHhc---
Confidence            4556776  899999999999999999999999999996   346   799999999998765421000  000001   


Q ss_pred             cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          278 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       278 v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                               ...+.++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|+||.+|+++....
T Consensus        82 ---------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           82 ---------TMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             ---------TCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             ---------CCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence                     123455588889999999999999999999887  9999988999999999999987654

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.51  E-value=2e-13  Score=126.86  Aligned_cols=143  Identities=11%  Similarity=0.136  Sum_probs=104.5

Q ss_pred             CCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCC---------
Q 014157          199 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS---------  269 (429)
Q Consensus       199 ~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~---------  269 (429)
                      .++++|+++++++.+++++.+|+++|.+++++.+||++. .+++   +++|+||..||++.+.........         
T Consensus        14 ~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~-~~~~---~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~~   89 (250)
T 2d4z_A           14 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT-PDTN---TLLGSIDRTEVEGLLQRRISAYRRQPAAAAEAD   89 (250)
T ss_dssp             BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCBC
T ss_pred             ChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec-CCCC---eEEEEEEHHHHHHHHHHhhhhhhhhhhhhhccc
Confidence            356789999999999999999999999999999999962 2235   799999999999887654211100         


Q ss_pred             ------------------CCcccCCcc----------------c----------------------------------c-
Q 014157          270 ------------------SLPILKLPI----------------C----------------------------------A-  280 (429)
Q Consensus       270 ------------------~~~~l~~~v----------------~----------------------------------~-  280 (429)
                                        ...++....                .                                  . 
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (250)
T 2d4z_A           90 EEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFEE  169 (250)
T ss_dssp             CC---------------------------------------------------------------------------CCS
T ss_pred             ccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCccccc
Confidence                              000000000                0                                  0 


Q ss_pred             -cc---Cccc-----cccc--C-CCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          281 -IP---VGTW-----VPKI--G-EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       281 -l~---i~~~-----~~~v--~-~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                       +.   ...|     ...+  . ..|.+.++++.+++++.++..+|...|++++||++ .|+++|+||++||++++..
T Consensus       170 ~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~~  246 (250)
T 2d4z_A          170 MLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  246 (250)
T ss_dssp             CCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence             00   0000     1112  1 25788899999999999999999999999999997 7999999999999987764

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.50  E-value=2.3e-13  Score=138.34  Aligned_cols=166  Identities=14%  Similarity=0.203  Sum_probs=126.4

Q ss_pred             eeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhc--
Q 014157          150 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN--  227 (429)
Q Consensus       150 ~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~--  227 (429)
                      ++.-++..|+.+++..+.........+-+......+.......+.|+...+|++|.++++++++++++.+|++.|.++  
T Consensus       107 ~l~~l~~dd~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~  186 (473)
T 2zy9_A          107 ILEELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTPEYVAVREGMTVEEVLRFLRRAAP  186 (473)
T ss_dssp             HHHHSCHHHHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBSCEEEECTTCBHHHHHHHHHHHGG
T ss_pred             HHHhCCHHHHHHHHHhCCHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCCCceEeCCCCcHHHHHHHHHhccC
Confidence            334466677777776554321001112223334444455566677888899999999999999999999999999986  


Q ss_pred             ---CCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcccccccCCCCCCCceeecCC
Q 014157          228 ---EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPS  304 (429)
Q Consensus       228 ---~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~  304 (429)
                         ++.++||+|   +++   +++|++|.+|++..             ..+.+            ++++|.+++++++++
T Consensus       187 ~~~~~~~ipVvd---~~~---~lvGiVt~~Dll~~-------------~~~~~------------v~dim~~~~~~v~~~  235 (473)
T 2zy9_A          187 DAETIYYIYVVD---EKG---RLKGVLSLRDLIVA-------------DPRTR------------VAEIMNPKVVYVRTD  235 (473)
T ss_dssp             GCSEEEEEEEEC---TTS---BEEEEEEHHHHHHS-------------CTTSB------------GGGTSBSSCCCEESS
T ss_pred             CcCceeEEEEEC---CCC---cEEEEEEHHHHhcC-------------CCCCc------------HHHHhCCCCeEEeCC
Confidence               589999996   345   79999999999751             01223            344487889999999


Q ss_pred             CCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          305 ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       305 ~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      +++.++++.|.+++.+.+||+|++|+++|+||.+|+++....
T Consensus       236 ~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          236 TDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             SBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence            999999999999999999999999999999999999986644

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.50  E-value=7e-14  Score=120.51  Aligned_cols=116  Identities=14%  Similarity=0.222  Sum_probs=97.4

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++.+++++.+|++.|.+++++.+||.    +++   +++|++|..|+++++......      ....+++      
T Consensus        21 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~----~~~---~~~Givt~~dl~~~~~~~~~~------~~~~~v~------   81 (157)
T 4fry_A           21 RTIYTVTKNDFVYDAIKLMAEKGIGALLVV----DGD---DIAGIVTERDYARKVVLQERS------SKATRVE------   81 (157)
T ss_dssp             CCCCEEETTSBHHHHHHHHHHHTCSEEEEE----SSS---SEEEEEEHHHHHHHSGGGTCC------SSSCBHH------
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEe----eCC---EEEEEEEHHHHHHHHHhccCC------ccccCHH------
Confidence            678999999999999999999999999996    345   799999999999876543211      1123333      


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  347 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~  347 (429)
                            ++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+||++.....
T Consensus        82 ------~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           82 ------EIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             ------HHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             ------HHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence                  34777899999999999999999999999999999 79999999999999877653

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.50  E-value=6.4e-14  Score=144.58  Aligned_cols=121  Identities=19%  Similarity=0.255  Sum_probs=103.8

Q ss_pred             cccCCCCCCCceeecCC-CCHHHHHHHHHhcCCCEEEEEC-CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc
Q 014157          288 PKIGEPNRRPLAMLRPS-ASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL  365 (429)
Q Consensus       288 ~~v~~~~~~~~~~v~~~-~sl~~a~~~m~~~~~~~lpVvd-~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~  365 (429)
                      .+++++|.++++++.++ +++.+|+++|.+++++++||+| ++++++|+||.+||++....+..    ..+.++.++|  
T Consensus       384 ~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~----~~~~~V~~im--  457 (527)
T 3pc3_A          384 LAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNR----QQSDPAIKAL--  457 (527)
T ss_dssp             SBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCC----CTTSBGGGGE--
T ss_pred             CcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccC----cCCCcHHHHh--
Confidence            35778899999999999 9999999999999999999999 78999999999999976544211    2245777765  


Q ss_pred             CCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCC----CeEEEEEeHHHHHHHhh
Q 014157          366 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS----KRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       366 ~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~----g~l~GiIs~~Dil~~l~  428 (429)
                                 .++++++.+++++.+++++|.++++  +|||| ++    |+++||||+.||++++.
T Consensus       458 -----------~~~~~~v~~~~~l~~a~~~m~~~~~--~pVVd-~~~~~~g~lvGIVT~~Dll~~l~  510 (527)
T 3pc3_A          458 -----------NKRVIRLNESEILGKLARVLEVDPS--VLILG-KNPAGKVELKALATKLDVTTFIA  510 (527)
T ss_dssp             -----------ETTCCEEETTSBHHHHHHHHTTCSE--EEEEE-ECSSSCEEEEEEEEHHHHHHHHH
T ss_pred             -----------cCCCeEECCCCcHHHHHHHHhhCCE--EEEEe-CCcccCCeEEEEEEHHHHHHHHH
Confidence                       5689999999999999999987775  79999 43    89999999999999985

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.50  E-value=6.7e-14  Score=123.18  Aligned_cols=138  Identities=19%  Similarity=0.277  Sum_probs=99.0

Q ss_pred             cCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccC--CCCCcccCCcc
Q 014157          203 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC--SSSLPILKLPI  278 (429)
Q Consensus       203 ~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~--~~~~~~l~~~v  278 (429)
                      +|.+  +++++.+++++.+|+++|.+++++.+||+|   +++   +++|++|.+||+++........  ....+......
T Consensus         9 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~---~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   82 (180)
T 3sl7_A            9 FMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVID---DNW---TLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTW   82 (180)
T ss_dssp             HSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHTCC-------------------CC
T ss_pred             hcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---eEEEEEEHHHHHhhhhhccccCCcccccccccchh
Confidence            4666  799999999999999999999999999996   456   8999999999985332110000  00000000000


Q ss_pred             ------ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          279 ------CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       279 ------~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                            ..+........++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           83 KTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             CSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence                  00000111223556688889999999999999999999999999999999999999999999986643

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.49  E-value=1.2e-13  Score=119.72  Aligned_cols=125  Identities=13%  Similarity=0.160  Sum_probs=97.1

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      ++|.++++++.+++++.+|++.|.+++++.+||+|. .+++   +++|++|..|+++++.......   ......++.++
T Consensus        17 dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~-~~~~---~~~Givt~~dl~~~~~~~~~~~---~~~~~~~v~~~   89 (164)
T 2pfi_A           17 HFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES-TESQ---ILVGIVQRAQLVQALQAEPPSR---APGHQQCLQDI   89 (164)
T ss_dssp             HHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHC----------CCCCBHHHH
T ss_pred             HHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec-CCCC---EEEEEEEHHHHHHHHHhhcccc---CCcccchhhhh
Confidence            357889999999999999999999999999999961 1256   8999999999998775421110   00111223322


Q ss_pred             cCcccccccCCCCCCC------ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          282 PVGTWVPKIGEPNRRP------LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       282 ~i~~~~~~v~~~~~~~------~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                                  |.+.      +.++.+++++.+|++.|.+++.+++||+| +|+++|+||.+||++....
T Consensus        90 ------------m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~  147 (164)
T 2pfi_A           90 ------------LARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISN  147 (164)
T ss_dssp             ------------HHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ------------hcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHh
Confidence                        3333      78999999999999999999999999999 7999999999999986643

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.48  E-value=7.4e-14  Score=120.71  Aligned_cols=122  Identities=9%  Similarity=0.146  Sum_probs=97.1

Q ss_pred             cCCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          203 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       203 ~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +|.+  +++++.+++++.+|++.|.+++++.+||+|   +++   +++|++|..|+++++......  ........+   
T Consensus        19 im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd---~~~---~lvGivt~~dl~~~~~~~~~~--~~~~~~~~~---   87 (159)
T 1yav_A           19 FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLD---PSY---RLHGLIGTNMIMNSIFGLERI--EFEKLDQIT---   87 (159)
T ss_dssp             HSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEEC---TTC---BEEEEEEHHHHHHHHBCSSSB--CGGGTTTSB---
T ss_pred             HhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEEC---CCC---CEEEEeEHHHHHHHhhhhccc--chhhhccCC---
Confidence            4666  789999999999999999999999999996   456   799999999999876432100  000011222   


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                               +.++|.+++.++.+++++.+|++.|.++++  +||+|++|+++|+||.+|+++....
T Consensus        88 ---------v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~  142 (159)
T 1yav_A           88 ---------VEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNK  142 (159)
T ss_dssp             ---------HHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------HHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHH
Confidence                     344477789999999999999999998876  9999989999999999999986654

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.47  E-value=2.8e-13  Score=119.79  Aligned_cols=139  Identities=10%  Similarity=0.110  Sum_probs=101.5

Q ss_pred             cCCCC----ceec--CCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCC----c
Q 014157          203 AFPRP----LVYA--GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL----P  272 (429)
Q Consensus       203 ~~~~~----~i~v--~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~----~  272 (429)
                      +|.+.    ++++  .+++++.+|++.|.+++++.+||++. .+++   +++|++|..|+++.+...........    .
T Consensus        16 im~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~-d~~~---~lvGiit~~dl~~~~~~~~~~~~~~~~~~~~   91 (185)
T 2j9l_A           16 VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVS-RESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSII   91 (185)
T ss_dssp             HSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESC-TTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             HhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEE-CCCC---eEEEEEEHHHHHHHHHhhcccCCCcccccee
Confidence            45555    7888  99999999999999999999999931 1456   89999999999998765321100000    0


Q ss_pred             ccCCcccccc-CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          273 ILKLPICAIP-VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       273 ~l~~~v~~l~-i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      .+.....+.. .......++++|.+++.++.+++++.+|++.|.+++.+++||+| +|+++|+||.+||++....
T Consensus        92 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~  165 (185)
T 2j9l_A           92 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  165 (185)
T ss_dssp             ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             ecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            0000000000 00112245666878899999999999999999999999999999 8999999999999986654

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.45  E-value=1.7e-13  Score=139.27  Aligned_cols=116  Identities=17%  Similarity=0.281  Sum_probs=101.7

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhc-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  363 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l  363 (429)
                      +++++|.++++++.+++++.+|++.|.++     +++++||+|++++++|++|.+|++...          .+.+++++|
T Consensus       156 ~v~~iM~~~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~~----------~~~~v~dim  225 (473)
T 2zy9_A          156 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD----------PRTRVAEIM  225 (473)
T ss_dssp             BSTTTCBSCEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHSC----------TTSBGGGTS
T ss_pred             CHHHhCCCCceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcCC----------CCCcHHHHh
Confidence            35666888999999999999999999986     579999999899999999999997521          135677765


Q ss_pred             hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          364 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                   .++++++++++++.+|++.|.+++.+.+|||| ++|+++|+||..|+++.+.
T Consensus       226 -------------~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVD-e~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          226 -------------NPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             -------------BSSCCCEESSSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -------------CCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEc-CCCEEEEEEehHhhHHHHH
Confidence                         56899999999999999999999999999999 5899999999999998764

>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A

Probab=99.45  E-value=5.1e-14  Score=110.86  Aligned_cols=46  Identities=35%  Similarity=0.672  Sum_probs=43.2

Q ss_pred             cccCCceeEEEEEECCeeeecCCCCcccCCCCCcceEEEecCCCCC
Q 014157            2 FFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFM   47 (429)
Q Consensus         2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~~n~~~~~~~~~~   47 (429)
                      +.||+|.|+|||+|||+|++||..|++.|+.|+.||+|.|.++|++
T Consensus        49 v~l~~G~~~YKf~VdG~~~~DP~~~~~~d~~G~~Nnvi~V~~~d~~   94 (96)
T 1z0n_A           49 LDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFE   94 (96)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEEEEECSCTTE
T ss_pred             EEccCCCEEEEEEECCeEEcCCCCCeEECCCCCEeEEEEEcCCCcC
Confidence            4799999999999999999999999999999999999999987754

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.41  E-value=8.5e-14  Score=146.48  Aligned_cols=137  Identities=14%  Similarity=0.050  Sum_probs=101.9

Q ss_pred             ccCCCCC--CCceeecCCCCHHHHHHHHH-hcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-c---------cc
Q 014157          289 KIGEPNR--RPLAMLRPSASLSAALNLLV-QAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-N---------LS  355 (429)
Q Consensus       289 ~v~~~~~--~~~~~v~~~~sl~~a~~~m~-~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l-~---------l~  355 (429)
                      +++++|.  +++.++++++++.++.+.|. +++++++||+|++++++|+||++|+.+.......... .         ..
T Consensus       454 ~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~~~~  533 (632)
T 3org_A          454 TAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLVLLD  533 (632)
T ss_dssp             BHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC------------------
T ss_pred             cHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhcccccccccceeccC
Confidence            5777888  88999999999999999999 7999999999999999999999999875543210000 0         00


Q ss_pred             c----ccHHHHHhcC----------------CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEE
Q 014157          356 E----MTIHQALQLG----------------QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE  415 (429)
Q Consensus       356 ~----~~v~~~l~~~----------------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~  415 (429)
                      .    ..+.......                .......++|+++++++++++++.+|++.|.+++++++||+|  +|+++
T Consensus       534 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVve--~G~lv  611 (632)
T 3org_A          534 AADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTE--RGKLV  611 (632)
T ss_dssp             -------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEEE--TTEEE
T ss_pred             HHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEEE--CCEEE
Confidence            0    0011110000                000113457899999999999999999999999999999996  79999


Q ss_pred             EEEeHHHHHHHh
Q 014157          416 GIVSLSDIFKFL  427 (429)
Q Consensus       416 GiIs~~Dil~~l  427 (429)
                      |+||++||++++
T Consensus       612 GIVT~~Dll~~~  623 (632)
T 3org_A          612 GIVEREDVAYGY  623 (632)
T ss_dssp             EEEEGGGTEECC
T ss_pred             EEEehhhHHHHH
Confidence            999999998765

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.41  E-value=6.9e-13  Score=135.67  Aligned_cols=113  Identities=18%  Similarity=0.292  Sum_probs=100.4

Q ss_pred             CCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          292 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       292 ~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      +.|..+++++.+++++.+++++|.+++++++||+|+  +++++|+||.+|+..   ..      ..+.++.++|      
T Consensus       117 ~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~---~~------~~~~~V~~vM------  181 (511)
T 3usb_A          117 SGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF---IQ------DYSIKISDVM------  181 (511)
T ss_dssp             SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT---CC------CSSSBHHHHC------
T ss_pred             cccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh---hc------cCCCcHHHhc------
Confidence            336678899999999999999999999999999998  899999999999964   11      1256888877      


Q ss_pred             CCcccccCC-CceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          370 YSPYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       370 ~~~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                             .+ +++++++++++.++++.|.+++++.+|||| ++|+++|+||..||++.+
T Consensus       182 -------~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVD-e~g~l~GiIT~~Dil~~~  232 (511)
T 3usb_A          182 -------TKEQLITAPVGTTLSEAEKILQKYKIEKLPLVD-NNGVLQGLITIKDIEKVI  232 (511)
T ss_dssp             -------CCCCCCCEETTCCHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHH
T ss_pred             -------ccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEe-CCCCEeeeccHHHHHHhh
Confidence                   44 789999999999999999999999999999 599999999999999876

>2qlv_B Protein SIP2, protein SPM2; heterotrimer, ATP-binding, carbohydrate metabolism, kinase, membrane, nucleotide-binding, nucleus; 2.60A {Saccharomyces cerevisiae} SCOP: b.1.18.21 d.353.1.1

Probab=99.35  E-value=4.2e-13  Score=123.83  Aligned_cols=46  Identities=17%  Similarity=0.285  Sum_probs=40.9

Q ss_pred             cccCCceeEEEEEECCeeeecCCCCcccCCCCCcceEEEecCCCCC
Q 014157            2 FFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFM   47 (429)
Q Consensus         2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~~n~~~~~~~~~~   47 (429)
                      ++||||.|||||+|||+|++||++|++.|+.|++||+|.|.++|..
T Consensus        46 v~LppG~y~YKFiVDG~w~~Dp~~p~~~d~~G~~nNvi~V~~~~~~   91 (252)
T 2qlv_B           46 LRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQPEKN   91 (252)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEEEEEECC----
T ss_pred             EECCCCEEEEEEEECCEEEeCCCCCEEecCCCcCcceeeccCcccc
Confidence            5899999999999999999999999999999999999999976544

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.34  E-value=3.4e-12  Score=130.63  Aligned_cols=114  Identities=21%  Similarity=0.333  Sum_probs=99.6

Q ss_pred             CCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          292 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       292 ~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd--~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++|.++++++.+++++.++++.|.+++++++||+|  ++++++|+||.+|++....         .+.++.++|      
T Consensus        94 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~~---------~~~~v~~im------  158 (491)
T 1zfj_A           94 NGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD---------YNAPISEHM------  158 (491)
T ss_dssp             TTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC---------SSSBTTTSC------
T ss_pred             hcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhcc---------CCCcHHHHc------
Confidence            44777899999999999999999999999999999  7899999999999985310         134566544      


Q ss_pred             CCcccccCC-CceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          370 YSPYELRSQ-RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       370 ~~~~~~~~~-~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                             .+ +++++++++++.++++.|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       159 -------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          159 -------TSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             -------CCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             -------CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEEHHHHHHHHh
Confidence                   55 788999999999999999999999999999 5899999999999998864

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.33  E-value=2.1e-11  Score=124.71  Aligned_cols=158  Identities=14%  Similarity=0.177  Sum_probs=116.6

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  282 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  282 (429)
                      .|..+++++.+++|+.+|+++|.+++++++||++.. .++   +++|++|.+|++.      .      .....+++++ 
T Consensus       118 ~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g-~~~---~lvGiVt~rDl~~------~------~~~~~~V~~v-  180 (511)
T 3usb_A          118 GVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNL-DER---KLVGIITNRDMRF------I------QDYSIKISDV-  180 (511)
T ss_dssp             CSSSSCCCBCTTSBHHHHHHHHHHHCCSEEEEESCT-TTC---BEEEEEEHHHHTT------C------CCSSSBHHHH-
T ss_pred             ccccCCEEECCCCCHHHHHHHHHHcCCcEEEEEecC-CCC---EEEEEEEehHhhh------h------ccCCCcHHHh-
Confidence            477889999999999999999999999999999621 145   8999999999953      0      1123344444 


Q ss_pred             CcccccccCCCCCC-CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 014157          283 VGTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQ  361 (429)
Q Consensus       283 i~~~~~~v~~~~~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~  361 (429)
                                 |.+ +++++++++++.+++++|.+++++.+||+|++|+++|+||.+|+++.......         +.+
T Consensus       181 -----------M~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a---------~~D  240 (511)
T 3usb_A          181 -----------MTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNS---------AKD  240 (511)
T ss_dssp             -----------CCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTC---------CBC
T ss_pred             -----------cccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccc---------hhh
Confidence                       776 89999999999999999999999999999999999999999999987654111         111


Q ss_pred             HHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEe
Q 014157          362 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE  408 (429)
Q Consensus       362 ~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd  408 (429)
                      ....           ..-...+.......+.++.|.+.++..++|-.
T Consensus       241 ~~~r-----------l~V~aavg~~~d~~era~aLveaGvd~I~Id~  276 (511)
T 3usb_A          241 KQGR-----------LLVGAAVGVTADAMTRIDALVKASVDAIVLDT  276 (511)
T ss_dssp             TTSC-----------BCCEEEECSSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred             hccc-----------eeeeeeeeeccchHHHHHHHHhhccceEEecc
Confidence            1100           00122333344445566777888888776654

>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}

Probab=99.32  E-value=1.1e-12  Score=124.80  Aligned_cols=42  Identities=31%  Similarity=0.574  Sum_probs=39.6

Q ss_pred             cccCCceeEEEEEECCeeeecCCCCcc-cCCCCCcceEEEecC
Q 014157            2 FFYIVHYVQYKFCVDGEWRHDEHQPFI-SSEYGIVNTVLLATE   43 (429)
Q Consensus         2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~-~~~~g~~~n~~~~~~   43 (429)
                      ++||||.|||||+|||+|++||+.|.. .|+.|++||+|.|.+
T Consensus       212 ~~L~~G~y~YkFiVDG~w~~d~~~~~~~~d~~G~~nn~~~v~~  254 (294)
T 3nme_A          212 RELPEGQFEYKYIIDGEWTHNEAEPFIGPNKDGHTNNYAKVVD  254 (294)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEECSCTTSCCEEEEEECC
T ss_pred             EECCCceEEEEEEECCEEeeCCCCCeeeECCCCCEeEEEEECC
Confidence            689999999999999999999999976 799999999999984

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.31  E-value=3.2e-13  Score=137.59  Aligned_cols=115  Identities=16%  Similarity=0.276  Sum_probs=86.2

Q ss_pred             CCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCC
Q 014157          292 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS  371 (429)
Q Consensus       292 ~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~  371 (429)
                      +.|..+++++.+++++.+++++|.+++++++||+|++++++|+||.+|+...   .      ..+.++.++|..      
T Consensus        93 ~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~---~------~~~~~v~diM~p------  157 (496)
T 4fxs_A           93 AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV---T------DLTKSVAAVMTP------  157 (496)
T ss_dssp             C--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC---C------CTTSBGGGTSEE------
T ss_pred             cccccCceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc---c------cCCCcHHHHhcC------
Confidence            3466789999999999999999999999999999999999999999999621   1      124567776631      


Q ss_pred             cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                           ..+++++++++++.++++.|.+++++.+|||| ++|+++|+||+.||++..
T Consensus       158 -----~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          158 -----KERLATVKEGATGAEVQEKMHKARVEKILVVN-DEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             -----GGGCCEEECC----CGGGTCC---CCCEEEEC-TTSBCCEEECCC-----C
T ss_pred             -----CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEc-CCCCEEEeehHhHHHHhh
Confidence                 11589999999999999999999999999999 599999999999999863

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.29  E-value=2.9e-13  Score=138.56  Aligned_cols=113  Identities=12%  Similarity=0.157  Sum_probs=0.0

Q ss_pred             CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157          294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~---g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~  370 (429)
                      |.++++++.+++++.+++++|.+++++++||+|++   ++++|+||.+|++.. ..       ..+.++.++|       
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~~-------~~~~~V~diM-------  167 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-LT-------QTETKVSDMM-------  167 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-hc-------cccCcHHHHh-------
Confidence            56688999999999999999999999999999987   899999999999864 11       1245777776       


Q ss_pred             CcccccCCC--ceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          371 SPYELRSQR--CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       371 ~~~~~~~~~--~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                            .++  ++++++++++.+|+++|.+++++++|||| ++|+++|+||.+||++.+.
T Consensus       168 ------~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~~  220 (503)
T 1me8_A          168 ------TPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID-DDQHLRYIVFRKDYDRSQV  220 (503)
T ss_dssp             ------------------------------------------------------------
T ss_pred             ------CCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc-CCCeEEEEEEecHHHHhhh
Confidence                  334  89999999999999999999999999999 5899999999999998764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.29  E-value=3.1e-13  Score=138.43  Aligned_cols=115  Identities=17%  Similarity=0.347  Sum_probs=4.7

Q ss_pred             CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157          291 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       291 ~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~  370 (429)
                      .++|.++++++.+++++.+|+++|.+++++++||+|++++++|+||.+|+.+...         .+.++.++|       
T Consensus        98 ~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~~---------~~~~v~~im-------  161 (494)
T 1vrd_A           98 ENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEKN---------LSKKIKDLM-------  161 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhcC---------CCCcHHHHh-------
Confidence            3447778999999999999999999999999999998899999999999986311         135677766       


Q ss_pred             CcccccCC--CceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          371 SPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       371 ~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                            .+  +++++.+++++.+++++|.+++++++|||| ++|+++|+||..||++.+.
T Consensus       162 ------~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          162 ------TPREKLIVAPPDISLEKAKEILHQHRIEKLPLVS-KDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             ------------------------------------------------------CHHHHT
T ss_pred             ------CCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEc-CCCeEEEEEEHHHHHhhhc
Confidence                  44  788999999999999999999999999999 5899999999999998864

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.28  E-value=1.1e-11  Score=127.80  Aligned_cols=123  Identities=14%  Similarity=0.163  Sum_probs=101.4

Q ss_pred             CCCccCCCCceecCCC-CcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCc
Q 014157          199 SHGKAFPRPLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP  277 (429)
Q Consensus       199 ~~g~~~~~~~i~v~~~-~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~  277 (429)
                      .++++|.++++++.++ +|+.+|+++|.+++++++||+|  .+++   +++|+||.+||++.+.....       ....+
T Consensus       385 ~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd--~~~g---~lvGiVt~~Dll~~l~~~~~-------~~~~~  452 (527)
T 3pc3_A          385 AIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD--QDDG---SVLGVVGQETLITQIVSMNR-------QQSDP  452 (527)
T ss_dssp             BGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEEC--TTTC---CEEEEEEHHHHHHHHHHHCC-------CTTSB
T ss_pred             cHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEE--CCCC---EEEEEEEHHHHHHHHHhccC-------cCCCc
Confidence            4567899999999999 9999999999999999999995  1345   79999999999988765311       11233


Q ss_pred             cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC----CcEEEEEeHHHHHHHHhcc
Q 014157          278 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN----DSLLDIYCRSDITALAKDK  347 (429)
Q Consensus       278 v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~----g~lvGivt~~Di~~~~~~~  347 (429)
                      ++            ++|.++++++.+++++.+++++|.+++  .+||+|++    |+++|+||..||++.+...
T Consensus       453 V~------------~im~~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          453 AI------------KALNKRVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             GG------------GGEETTCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             HH------------HHhcCCCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence            33            447789999999999999999997665  47999974    8999999999999877653

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.27  E-value=4.4e-13  Score=136.51  Aligned_cols=115  Identities=17%  Similarity=0.267  Sum_probs=0.8

Q ss_pred             CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157          291 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       291 ~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~  370 (429)
                      +++|..+++++.+++++.+++++|.+++++++||+| +++++|+||.+|+.....         .+.++.++|..     
T Consensus        91 ~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~---------~~~~V~~vMtp-----  155 (490)
T 4avf_A           91 ETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN---------AGDTVAAIMTP-----  155 (490)
T ss_dssp             CC------------------------------------------------------------------------------
T ss_pred             ccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc---------cCCcHHHHhcc-----
Confidence            344667889999999999999999999999999999 899999999999963211         14677887631     


Q ss_pred             CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                            ..+++++++++++.+|+++|.+++++.+|||| ++|+++|+||+.||++..
T Consensus       156 ------~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD-e~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          156 ------KDKLVTAREGTPLEEMKAKLYENRIEKMLVVD-ENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             ---------------------------------------------------------
T ss_pred             ------CCCCEEECCCCcHHHHHHHHHHcCCCEEEEEc-CCCcEEEEEehHHhhhhc
Confidence                  01689999999999999999999999999999 599999999999999864

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.19  E-value=1.8e-12  Score=129.55  Aligned_cols=109  Identities=22%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCC
Q 014157          294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~  370 (429)
                      |..+++++.++.++.+|+++|.+++++.+||+++   +++++|++|.+|+...  +        .+.++.++|       
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~--d--------~~~~V~evM-------  206 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ--D--------AETPIKSVM-------  206 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc--c--------cceEhhhhc-------
Confidence            3457899999999999999999999999999986   6799999999998541  1        135678776       


Q ss_pred             CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHH
Q 014157          371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF  426 (429)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~  426 (429)
                            ++++++++.+.++.+|.++|.++++..||||| ++++|+|+||+.|+.+.
T Consensus       207 ------T~~lvt~~~~~~leeA~~iL~~~kieklpVVd-~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          207 ------TTEVVTGSSPITLEKANSLLRETKKGKLPIVD-SNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             --------------------------------------------------------
T ss_pred             ------ccceEEecCCCCHHHHHHHHHHccccceeEEc-cCCcEEEEEEechhhhh
Confidence                  55799999999999999999999999999999 59999999999999875

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.18  E-value=1.3e-11  Score=129.92  Aligned_cols=137  Identities=15%  Similarity=0.101  Sum_probs=99.4

Q ss_pred             CCccCC--CCceecCCCCcHHHHHHHHH-hcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCC-----
Q 014157          200 HGKAFP--RPLVYAGPNDNLKDVARKIL-HNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL-----  271 (429)
Q Consensus       200 ~g~~~~--~~~i~v~~~~sl~da~~~m~-~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~-----  271 (429)
                      ++++|+  ++++++++++++.|+.+.|. +++.+++||+|   +++   +++|++|.+|+++.+...........     
T Consensus       455 V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd---~~~---~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~  528 (632)
T 3org_A          455 AREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVID---ANG---YLLGAISRKEIVDRLQHVLEDVPEPIAGHRT  528 (632)
T ss_dssp             HHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBC---TTC---BBCCEESHHHHTTTTTTC-------------
T ss_pred             HHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEe---cCC---eEEEEEEHHHHHHHHHHHhhhcccccccccc
Confidence            456788  89999999999999999999 79999999996   355   79999999999976644311100000     


Q ss_pred             ------cccCCcccccc-----------------CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC
Q 014157          272 ------PILKLPICAIP-----------------VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN  328 (429)
Q Consensus       272 ------~~l~~~v~~l~-----------------i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~  328 (429)
                            ..+.+.+..+.                 +-...+++.++|.++++++++++++.+++++|.+++++++||+ ++
T Consensus       529 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~  607 (632)
T 3org_A          529 LVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ER  607 (632)
T ss_dssp             ------------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ET
T ss_pred             eeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-EC
Confidence                  00000011100                 0011123778899999999999999999999999999999999 68


Q ss_pred             CcEEEEEeHHHHHHH
Q 014157          329 DSLLDIYCRSDITAL  343 (429)
Q Consensus       329 g~lvGivt~~Di~~~  343 (429)
                      |+++|+||++|+++.
T Consensus       608 G~lvGIVT~~Dll~~  622 (632)
T 3org_A          608 GKLVGIVEREDVAYG  622 (632)
T ss_dssp             TEEEEEEEGGGTEEC
T ss_pred             CEEEEEEehhhHHHH
Confidence            999999999999754

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.16  E-value=2.5e-12  Score=131.56  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=18.4

Q ss_pred             CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccC
Q 014157          204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  283 (429)
Q Consensus       204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  283 (429)
                      |.++++++.+++|+.+|+++|.+++++++||+|.+...+   +++|++|.+|++..  .   .      ....       
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g---~lvGiVt~~Dl~~~--~---~------~~~~-------  161 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHG---VLLGLVTQRDYPID--L---T------QTET-------  161 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCC---eEEEEEEHHHHHhh--h---c------cccC-------
Confidence            778999999999999999999999999999996211125   79999999999752  0   0      1122       


Q ss_pred             cccccccCCCCCCC--ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHH
Q 014157          284 GTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQ  361 (429)
Q Consensus       284 ~~~~~~v~~~~~~~--~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~  361 (429)
                           .+.++|.++  ++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++.......         ..+
T Consensus       162 -----~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~---------~~d  227 (503)
T 1me8_A          162 -----KVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNE---------LVD  227 (503)
T ss_dssp             -----------------------------------------------------------------CCC---------CBC
T ss_pred             -----cHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccc---------hhc
Confidence                 244447776  9999999999999999999999999999999999999999999976543211         011


Q ss_pred             HHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEE
Q 014157          362 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI  406 (429)
Q Consensus       362 ~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~V  406 (429)
                      ..         ..++  ....+.. ....+.++.|.+.+++.+.|
T Consensus       228 ~~---------~~l~--v~a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          228 SQ---------KRYL--VGAGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             TT---------SCBC--CEEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             cc---------cccc--cccccCc-hhHHHHHHHHHhhhccceEE
Confidence            00         0011  1123444 56666788888888886544

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.11  E-value=1e-09  Score=112.18  Aligned_cols=115  Identities=16%  Similarity=0.248  Sum_probs=97.8

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  282 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  282 (429)
                      +|..+++++.+++++.+|++.|.+++++++||++. .+++   +++|++|.+|++..     .       ....      
T Consensus        95 im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-~~~~---~lvGivt~~Dl~~~-----~-------~~~~------  152 (491)
T 1zfj_A           95 GVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFI-----S-------DYNA------  152 (491)
T ss_dssp             TTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHC-----S-------CSSS------
T ss_pred             cCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEe-CCCC---EEEEEEEHHHHhhh-----c-------cCCC------
Confidence            57889999999999999999999999999999951 1235   79999999999742     0       0112      


Q ss_pred             CcccccccCCCCCC-CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          283 VGTWVPKIGEPNRR-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       283 i~~~~~~v~~~~~~-~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                            .+.++|.+ +++++.+++++.++++.|.+++++.+||+|++|+++|++|..|+++...
T Consensus       153 ------~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          153 ------PISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             ------BTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ------cHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHh
Confidence                  24455777 8899999999999999999999999999999999999999999998765

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.10  E-value=1.1e-12  Score=134.84  Aligned_cols=117  Identities=21%  Similarity=0.248  Sum_probs=67.3

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      +.++|.++++++.+++++.+|+++|.+++++.+||+|+   +++++|+||.+|+......       ....++.++|   
T Consensus       110 ~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~-------~~~~~v~~vm---  179 (514)
T 1jcn_A          110 FEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEK-------DHTTLLSEVM---  179 (514)
T ss_dssp             CCTTSCSSCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------------
T ss_pred             hhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhc-------cCCCCHHHHh---
Confidence            34457778899999999999999999999999999997   5899999999998753210       1235677766   


Q ss_pred             CCCCCcccccCC--CceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          367 QDSYSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       367 ~~~~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                                .+  +++++.+++++.+++++|.+++++++|||| ++|+++|+||++||++++
T Consensus       180 ----------~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd-~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          180 ----------TPRIELVVAPAGVTLKEANEILQRSKKGKLPIVN-DCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             -----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEES-SSSCCC----CCCCSSCC
T ss_pred             ----------CCCCCCeEECCCCCHHHHHHHHHHcCCCcccEEC-CCCeEEEEEEHHHHHHHh
Confidence                      44  789999999999999999999999999999 589999999999998754

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.07  E-value=2.2e-11  Score=121.70  Aligned_cols=113  Identities=24%  Similarity=0.318  Sum_probs=0.0

Q ss_pred             CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccC
Q 014157          204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  283 (429)
Q Consensus       204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  283 (429)
                      +..+++++.|+.|+.||..+|.+++++.+||++....++   +++||+|.+|+. |-     .       ...+      
T Consensus       144 ~i~dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~---kLvGIvT~RD~r-f~-----d-------~~~~------  201 (556)
T 4af0_A          144 FITDPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDS---KLLGIVTGRDVQ-FQ-----D-------AETP------  201 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCC---EEEEEEeccccc-cc-----c-------cceE------
Confidence            567789999999999999999999999999997433356   899999999973 21     1       1223      


Q ss_pred             cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          284 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       284 ~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                            +.++|.++++++..+.++.+|.++|.++++..+||||++++++|+||++|+.+..
T Consensus       202 ------V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          202 ------IKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------------------------------------------------------
T ss_pred             ------hhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhh
Confidence                  3444888999999999999999999999999999999999999999999998644

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.06  E-value=1.7e-11  Score=124.99  Aligned_cols=108  Identities=17%  Similarity=0.351  Sum_probs=0.0

Q ss_pred             CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcc
Q 014157          294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY  373 (429)
Q Consensus       294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~  373 (429)
                      |..+++++.+++++.++++.|.+++++++||+|+ ++++|+|+.+|++.   .        .+.++.++|          
T Consensus        99 m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~---~--------~~~~v~~im----------  156 (486)
T 2cu0_A           99 IVEDVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA---R--------EGKLVKELM----------  156 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc---C--------CCCCHHHHc----------
Confidence            5668889999999999999999999999999997 99999999999975   1        135677766          


Q ss_pred             cccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          374 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       374 ~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                         .++++++++++++.++++.|.+++++.+|||| ++|+++|+||..||++.+
T Consensus       157 ---~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVd-e~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          157 ---TKEVITVPESIEVEEALKIMIENRIDRLPVVD-ERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             ------------------------------------------------------
T ss_pred             ---cCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe-cCCeEEEEEEHHHHHHhh
Confidence               45788999999999999999999999999999 589999999999999865

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.06  E-value=6.6e-11  Score=120.56  Aligned_cols=113  Identities=17%  Similarity=0.197  Sum_probs=83.0

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      ..|..+++++++++++.+|+++|.+++++++||++   +++   +++|++|.+|++.      ..      ....+    
T Consensus        93 ~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd---~~~---~lvGiVt~rDL~~------~~------~~~~~----  150 (496)
T 4fxs_A           93 AGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVT---ENN---ELVGIITGRDVRF------VT------DLTKS----  150 (496)
T ss_dssp             C--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEEC---SSS---BEEEEEEHHHHTT------CC------CTTSB----
T ss_pred             cccccCceEECCCCCHHHHHHHHHHcCCcEEEEEc---cCC---EEEEEEEHHHHhh------cc------cCCCc----
Confidence            35788999999999999999999999999999996   345   8999999999851      10      11223    


Q ss_pred             cCcccccccCCCCC-C-CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          282 PVGTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       282 ~i~~~~~~v~~~~~-~-~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                              +.++|. + +++++.+++++.+++++|.++++..+||+|++|+++|+||.+|+++..
T Consensus       151 --------v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          151 --------VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMITAKDFHKAE  207 (496)
T ss_dssp             --------GGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEECCC-----C
T ss_pred             --------HHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEeehHhHHHHhh
Confidence                    334476 3 589999999999999999999999999999999999999999998754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.01  E-value=8.6e-11  Score=120.23  Aligned_cols=114  Identities=18%  Similarity=0.323  Sum_probs=4.9

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  282 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  282 (429)
                      +|.++++++.+++++.+|+++|.+++++.+||+|   +++   +++|++|.+|+++.  .          ....      
T Consensus       100 iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd---~~~---~lvGivt~~Dl~~~--~----------~~~~------  155 (494)
T 1vrd_A          100 GIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVD---EEG---RLVGLLTNRDVRFE--K----------NLSK------  155 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCccCCeEECCCCCHHHHHHHHHHcCceEEEEEc---CCC---EEEEEEEHHHHHhh--c----------CCCC------
Confidence            5788999999999999999999999999999996   345   79999999999741  0          0112      


Q ss_pred             CcccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          283 VGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       283 i~~~~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                            .+.++|.+  +++++.+++++.+++++|.+++++.+||+|++|+++|+||..|+++....
T Consensus       156 ------~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          156 ------KIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -----------------------------------------------------------CHHHHTC
T ss_pred             ------cHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence                  24445777  89999999999999999999999999999999999999999999987643

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.98  E-value=1.4e-10  Score=118.09  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=0.4

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      ..|..+++++++++|+.+|+++|.+++++++||+|    ++   +++|++|.+|+... .           ....+    
T Consensus        92 ~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd----~g---~lvGIVt~rDl~~~-~-----------~~~~~----  148 (490)
T 4avf_A           92 TAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE----QG---ELVGIVTGRDLRVK-P-----------NAGDT----  148 (490)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             cCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE----CC---EEEEEEEhHHhhhc-c-----------ccCCc----
Confidence            35778899999999999999999999999999995    45   79999999998521 0           11222    


Q ss_pred             cCcccccccCCCCC-C-CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          282 PVGTWVPKIGEPNR-R-PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       282 ~i~~~~~~v~~~~~-~-~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                              +.++|. + +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++...
T Consensus       149 --------V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          149 --------VAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             --------HHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence                    334477 3 6899999999999999999999999999999999999999999998653

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.85  E-value=3.3e-09  Score=78.19  Aligned_cols=62  Identities=16%  Similarity=0.334  Sum_probs=50.5

Q ss_pred             ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157          298 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  363 (429)
Q Consensus       298 ~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l  363 (429)
                      ++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++.......   +..+.+++++|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~---~~~~~~V~~iM   63 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGK---NPKEVKVEEIM   63 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTC---CGGGCBGGGTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCC---CcccCCHHHhc
Confidence            57899999999999999999999999998 6899999999999864432211   23356788766

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.82  E-value=8.9e-10  Score=112.34  Aligned_cols=110  Identities=15%  Similarity=0.309  Sum_probs=0.4

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  282 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  282 (429)
                      .|..+++++.+++++.++++.|.+++.+++||++   + +   +++|+++.+|++.   .           ...+     
T Consensus        98 ~m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd---~-~---~lvGivt~~Dl~~---~-----------~~~~-----  151 (486)
T 2cu0_A           98 LIVEDVITIAPDETVDFALFLMEKHGIDGLPVVE---D-E---KVVGIITKKDIAA---R-----------EGKL-----  151 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCceEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHhcc---C-----------CCCC-----
Confidence            4778999999999999999999999999999996   2 5   7999999999874   0           0122     


Q ss_pred             CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          283 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       283 i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                             +.++|.++++++.+++++.+++++|.+++++.+||+|++|+++|++|.+||++...
T Consensus       152 -------v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          152 -------VKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             --------------------------------------------------------------C
T ss_pred             -------HHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence                   33447778899999999999999999999999999999999999999999998653

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.74  E-value=3.5e-10  Score=116.24  Aligned_cols=118  Identities=20%  Similarity=0.283  Sum_probs=66.8

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      ++|.++++++.+++++.+|+++|.+++++.+||+|.+..++   +++|++|.+|+.....          .....     
T Consensus       112 ~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~---~lvGiVt~~Dl~~~~~----------~~~~~-----  173 (514)
T 1jcn_A          112 QGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGS---KLVGIVTSRDIDFLAE----------KDHTT-----  173 (514)
T ss_dssp             TTSCSSCCCCCC-----------------CEESCC-----------CCEECTTTTC------------------------
T ss_pred             hccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCC---EEEEEEEHHHHHhhhh----------ccCCC-----
Confidence            45778899999999999999999999999999996211035   7999999999864210          00112     


Q ss_pred             cCcccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          282 PVGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       282 ~i~~~~~~v~~~~~~--~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                             .+.++|.+  +++++.+++++.+++++|.+++.+.+||||++|+++|+||++|+++..
T Consensus       174 -------~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          174 -------LLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             --------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCC
T ss_pred             -------CHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHh
Confidence                   24445777  899999999999999999999999999999999999999999987643

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.72  E-value=3.4e-08  Score=72.70  Aligned_cols=47  Identities=23%  Similarity=0.408  Sum_probs=43.7

Q ss_pred             ceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          380 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       380 ~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      ++++.+++++.+|+++|.+++++++||+|  +|+++||||.+||++.++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d--~~~lvGIvT~~Di~~~~~   48 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME--GDEILGVVTERDILDKVV   48 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE--TTEEEEEEEHHHHHHHTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            67899999999999999999999999999  589999999999987653

>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable, cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus marinus}

Probab=98.20  E-value=5.7e-07  Score=95.64  Aligned_cols=39  Identities=10%  Similarity=0.083  Sum_probs=34.8

Q ss_pred             CcccCCceeEEEEEECCeee--ecCCCCc---ccCCCCCcceEE
Q 014157            1 MFFYIVHYVQYKFCVDGEWR--HDEHQPF---ISSEYGIVNTVL   39 (429)
Q Consensus         1 ~~~l~~g~~~ykf~vdg~w~--~~~~~~~---~~~~~g~~~n~~   39 (429)
                      +++||||+|||||+|||+|+  +||+.|.   +.|.+|.-|++.
T Consensus        59 ~~~L~~g~~~y~f~vdg~~~~~~d~~~~~~~y~~~~~g~~n~~~  102 (696)
T 4aee_A           59 YLKLWPGEYGYGFQIDNDFENVLDPDNEEKKCVHTSFFPEYKKC  102 (696)
T ss_dssp             EEEECSEEEEEEEEETTCCSCCCCTTCCCEEEEECSSCTTSEEE
T ss_pred             EEEcCCceEEEEEEECCEEeecCCCCCCcccccccCCcccccee
Confidence            47899999999999999999  8899874   569999999985

>4aef_A Neopullulanase (alpha-amylase II); hydrolase, thermostability, high temperature; 2.34A {Pyrococcus furiosus}

Probab=96.93  E-value=0.00037  Score=73.27  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=30.2

Q ss_pred             cccCCceeEEEEEECCeeeecCCCCcc----cCCCCCcceEEE
Q 014157            2 FFYIVHYVQYKFCVDGEWRHDEHQPFI----SSEYGIVNTVLL   40 (429)
Q Consensus         2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~----~~~~g~~~n~~~   40 (429)
                      ++||||.|+|||.|||+|..||..|..    .+.+|..+.+..
T Consensus        57 v~L~~G~y~Y~f~vdg~~~~dp~n~~~~~~~~~~~~~~~~~~~   99 (645)
T 4aef_A           57 IALPEGVWHYAFSIDGKFVLDPDNPERRVYTRKGYKFHREVNV   99 (645)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTCCCEEEEEEGGGTEEEEEEE
T ss_pred             EEeCCceEEEEEEECCeEecCCCCCCcccccccCcCcccceee
Confidence            679999999999999999999998754    344555444433

>2z0b_A GDE5, KIAA1434, putative glycerophosphodiester phosphodiesterase; CBM20 domain, starch-binding, hydrolase, STR genomics, NPPSFA; 2.00A {Homo sapiens}

Probab=92.79  E-value=0.038  Score=45.25  Aligned_cols=38  Identities=26%  Similarity=0.466  Sum_probs=21.7

Q ss_pred             cccCCce-eEEEEEE--------C-C-------eeeecCCC---------CcccC-CCCCcceEE
Q 014157            2 FFYIVHY-VQYKFCV--------D-G-------EWRHDEHQ---------PFISS-EYGIVNTVL   39 (429)
Q Consensus         2 ~~l~~g~-~~ykf~v--------d-g-------~w~~~~~~---------~~~~~-~~g~~~n~~   39 (429)
                      ++||.|. +||||++        + |       .|...++.         .++.| .+|..|++.
T Consensus        61 v~lp~~~~~eYKyvi~~~~~~~~~~g~~~v~~~~WE~g~~NR~l~~~~~~~~~~Dg~FG~~~~~~  125 (131)
T 2z0b_A           61 IVLSRGVSVQYRYFKGYFLEPKTIGGPCQVIVHKWETHLQPRSITPLESEIIIDDGQFGIHNGVE  125 (131)
T ss_dssp             EEECTTCCEEEEEEEEEEECCCC----CEEEEEEECCSSCCEEECCCSSEEEEEEEETTC-----
T ss_pred             EEcCCCCcEEEEEEEEeecCccccCCccccceeeECCCCCCcEEecCCCceEeecccCcccCCee
Confidence            5788885 9999999        5 4       78877722         23344 566665543

>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron aquisition, structural genomics, PSI-2, protein structure initiative; HET: CIT; 1.80A {Shigella flexneri 2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A* 3c8h_A 3mga_A*

Probab=81.73  E-value=1  Score=43.96  Aligned_cols=43  Identities=14%  Similarity=0.057  Sum_probs=36.1

Q ss_pred             cccCCcee-EEEEEEC------------------------CeeeecCCCCcccC-CCCCcceEEEecCC
Q 014157            2 FFYIVHYV-QYKFCVD------------------------GEWRHDEHQPFISS-EYGIVNTVLLATEP   44 (429)
Q Consensus         2 ~~l~~g~~-~ykf~vd------------------------g~w~~~~~~~~~~~-~~g~~~n~~~~~~~   44 (429)
                      +.||+|-| .|.|+||                        |..+.||.+|.... ..|...+++.+...
T Consensus        84 ~~l~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~r~~w~~~~~~~~~DP~n~~~~~~~~~~~~s~~~~p~~  152 (403)
T 3c8d_A           84 TQLNANWRGSYCFIPTERDDIFSAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQA  152 (403)
T ss_dssp             EEEETTCEEEEEEEEESCCSTTCCC--CHHHHHHHHHHHGGGCBCCTTCSSEECCSSSSCEEEEECTTC
T ss_pred             EEECCCcEEEEEEEecCcccccccccchHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccccccCCCC
Confidence            36899999 9999999                        78889999997654 44888899999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	429
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	9e-16
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-11
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	2e-15
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	1e-07
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	5e-11
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	0.001
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	9e-11
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	1e-04
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	2e-10
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	3e-04
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	1e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	1e-09
d1z0na1	87	b.1.18.21 (A:77-163) 5'-AMP-activated protein kina	2e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	5e-08
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	0.001
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	1e-07
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-07
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	1e-06
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-06
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-06
d2qlvb1	87	b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisi	5e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	1e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	1e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	1e-04
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	3e-04
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	3e-04
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	3e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	0.001

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.2 bits (176), Expect = 9e-16
 Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 16/162 (9%)

Query: 97  VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSA 156
            + F+ +H  Y+L+P S K+V  D  L VK+AF  L   G+  APLWD  K  FVG+L+ 
Sbjct: 6   YTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTI 65

Query: 157 SDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 216
           +DFI IL            E  E    +  +       + +           V   PN +
Sbjct: 66  TDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL-----------VCISPNAS 114

Query: 217 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 258
           L D    ++ N++  +P+I     D      L+I +   ILK
Sbjct: 115 LFDAVSSLIRNKIHRLPVI-----DPESGNTLYILTHKRILK 151

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.6 bits (146), Expect = 1e-11
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 3/136 (2%)

Query: 293 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV-DDNDSLLDIYCRSDITALAKDKAYAH 351
           P    L +   S  +  A   LV   V + P+      S + +   +D   +     Y  
Sbjct: 20  PTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDF--INILHRYYK 77

Query: 352 INLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS 411
             L ++   +  ++        +   +      P+ +L   +  L    + RL +++  S
Sbjct: 78  SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 137

Query: 412 KRVEGIVSLSDIFKFL 427
                I++   I KFL
Sbjct: 138 GNTLYILTHKRILKFL 153

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 71.9 bits (175), Expect = 2e-15
 Identities = 38/171 (22%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 95  HRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVL 154
             +  F+ + T+Y++LP S +++  D+ L VK +  +L    I  APLWD    +F G+L
Sbjct: 11  KEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLL 70

Query: 155 SASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 214
           + +DF+ +++      S           I+   + +    R+++    A P   +Y  P 
Sbjct: 71  TMADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPM 123

Query: 215 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR 265
            +L D    +  +    +P+I    + GS   ++ + +   ILK +    +
Sbjct: 124 HSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFISMNCK 173

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 20/142 (14%), Positives = 49/142 (34%), Gaps = 7/142 (4%)

Query: 293 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLD--IYCRSDITALAKDKAYA 350
           P    L +   +  +  +L+LL    + S P+ D   +     +     +  +      +
Sbjct: 27  PTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSS 86

Query: 351 HINLSEMTIHQALQLG-QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE- 408
               +   I +   LG ++                P  +L      ++    RR+ +++ 
Sbjct: 87  SFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV 146

Query: 409 ---AGSKRVEGIVSLSDIFKFL 427
               GS+ +  +++   I KF+
Sbjct: 147 DGETGSEMIVSVLTQYRILKFI 168

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 58.4 bits (140), Expect = 5e-11
 Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 20/154 (12%)

Query: 276 LPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIY 335
           +P+  + +GTW           LA       +   + +L +  +S++PIV+   +LL++Y
Sbjct: 1   VPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVY 51

Query: 336 CRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMER 395
              D+  L +D  Y++++LS                           C  +D L  + + 
Sbjct: 52  ESVDVMHLIQDGDYSNLDLSVGEALL----------KRPANFDGVHTCRATDRLDGIFDA 101

Query: 396 LANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 429
           + +  V RL +V+    ++EGI+SL+DI  +++ 
Sbjct: 102 IKHSRVHRLFVVDEN-LKLEGILSLADILNYIIY 134

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 18/133 (13%)

Query: 208 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC 267
           L  A     + DV + +    +             + P +    +L  + + V       
Sbjct: 14  LATASMETKVYDVIKMLAEKNI------------SAVPIVNSEGTLLNVYESVDVMHLIQ 61

Query: 268 SSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD 327
                 L L +    +          N   +   R +  L    + +  ++V  + +VD+
Sbjct: 62  DGDYSNLDLSVGEALLKRP------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE 115

Query: 328 NDSLLDIYCRSDI 340
           N  L  I   +DI
Sbjct: 116 NLKLEGILSLADI 128

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 9e-11
 Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 11/142 (7%)

Query: 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346
           + ++       +AM+R +  +  AL + VQ +VS++P+VD+   ++DIY + D+  LA +
Sbjct: 11  LEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAE 70

Query: 347 KAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 406
           K Y ++++S     Q                +    C   +TL  ++ RL    V RLV+
Sbjct: 71  KTYNNLDVSVTKALQH----------RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVV 120

Query: 407 VEAGSKRVEGIVSLSDIFKFLL 428
           V+     V+GIVSLSDI + L+
Sbjct: 121 VDEH-DVVKGIVSLSDILQALV 141

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 18/150 (12%), Positives = 47/150 (31%), Gaps = 18/150 (12%)

Query: 191 AYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI 250
            ++++ ++         +        +       + + V+ +P++               
Sbjct: 5   EFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVD------------EK 52

Query: 251 ASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAA 310
             +  I             +   L + +          +        +       +L A 
Sbjct: 53  GRVVDIYSKFDVINLAAEKTYNNLDVSVT------KALQHRSHYFEGVLKCYLHETLEAI 106

Query: 311 LNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 340
           +N LV+A+V  + +VD++D +  I   SDI
Sbjct: 107 INRLVEAEVHRLVVVDEHDVVKGIVSLSDI 136

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 32/142 (22%), Positives = 64/142 (45%), Gaps = 11/142 (7%)

Query: 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346
           +  +    +  +   + +  +   + +L Q +VSS+PI+D+N  L+++Y   D+  L K 
Sbjct: 8   IGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG 67

Query: 347 KAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 406
             Y  ++LS                      +    C  +D L  +M+ +    V R  +
Sbjct: 68  GIYNDLSLSVGEALM----------RRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFV 117

Query: 407 VEAGSKRVEGIVSLSDIFKFLL 428
           V+    R+ G+++LSDI K++L
Sbjct: 118 VDDV-GRLVGVLTLSDILKYIL 138

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 192 YLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIA 251
           +L   I          +        + DV + +    V++VPII    ++G    +    
Sbjct: 3   FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENGYLINVYEAY 59

Query: 252 SLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAAL 311
            + G++K         S    +++       V T                  +  LS  +
Sbjct: 60  DVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYT---------------CTKNDKLSTIM 104

Query: 312 NLLVQAQVSSIPIVDDNDSLLDIYCRSDI 340
           + + +A+V    +VDD   L+ +   SDI
Sbjct: 105 DNIRKARVHRFFVVDDVGRLVGVLTLSDI 133

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 26/153 (16%), Positives = 63/153 (41%), Gaps = 14/153 (9%)

Query: 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRS---------- 338
           +I    +R ++++     L AAL  L+ +   ++P+VD   +L+ I   +          
Sbjct: 5   EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVR 64

Query: 339 ---DITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMER 395
                   A  +    +      + +  +L   +    E+ ++   +  P  T+H+V  +
Sbjct: 65  IMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALK 124

Query: 396 LANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 428
           +A   + +L ++  G   + G++   D+ K L+
Sbjct: 125 MAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV 156

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 25/140 (17%), Positives = 48/140 (34%), Gaps = 11/140 (7%)

Query: 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA 348
           K+ +   R    L  + +L+ A +L+    +  +PIVD N  LL I  + D+ A  +   
Sbjct: 3   KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSL 62

Query: 349 YAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE 408
                   +               +E+         P   L +    +    +  L +V 
Sbjct: 63  QRSAQGDSLAFE---------TPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA 113

Query: 409 AGSKRVEGIVSLSDIFKFLL 428
                + GI++ SD     +
Sbjct: 114 KD--VLVGIITDSDFVTIAI 131

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 10 QYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNF 46
          QYKF VDG+W HD  +P ++S+ G VN ++   + +F
Sbjct: 48 QYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDF 84

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 49.0 bits (116), Expect = 5e-08
 Identities = 17/142 (11%), Positives = 47/142 (33%), Gaps = 19/142 (13%)

Query: 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346
           V  + +     +  + P  S+  A+  +    + ++ ++ D   +  +  R         
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVGILTERDFSRKSYLL 63

Query: 347 KAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 406
                    +  + +                 +      ++T    M  +    VR L +
Sbjct: 64  DKPVKDTQVKEIMTR-----------------QVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 407 VEAGSKRVEGIVSLSDIFKFLL 428
           ++ G  +V G++S+ D+ K  +
Sbjct: 107 LDDG--KVIGLLSIGDLVKDAI 126

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 17/136 (12%), Positives = 47/136 (34%), Gaps = 26/136 (19%)

Query: 205 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 264
              +V  GP+D++ +  +K+  + +  + ++      G                   R F
Sbjct: 12  GHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKLVG---------------ILTERDF 56

Query: 265 RHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPI 324
                           +       ++ E   R +A +  + +    + L+ + +V  +P+
Sbjct: 57  SRK----------SYLLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPV 106

Query: 325 VDDNDSLLDIYCRSDI 340
           +DD   ++ +    D+
Sbjct: 107 LDDGK-VIGLLSIGDL 121

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 24/134 (17%), Positives = 58/134 (43%), Gaps = 19/134 (14%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 354
            + L  ++PS S+  A  L+++  V S+ +++D+ +++  + +SDI          +   
Sbjct: 12  TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIP 71

Query: 355 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 414
            E  + +                        +  L +V+ ++A   ++ ++I E G  ++
Sbjct: 72  VERIMTR-----------------NLITANVNTPLGEVLRKMAEHRIKHILIEEEG--KI 112

Query: 415 EGIVSLSDIFKFLL 428
            GI +LSD+ +   
Sbjct: 113 VGIFTLSDLLEASR 126

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 47.2 bits (111), Expect = 2e-07
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 354
              +  +    +L+AA   + +  + ++PI  D+D L  +    DI              
Sbjct: 8   NAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTA 67

Query: 355 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 414
           +   + +                        + ++ +++  +    VRR+ ++     R+
Sbjct: 68  TAGELAR----------------DSIYYVDANASIQEMLNVMEEHQVRRVPVISEH--RL 109

Query: 415 EGIVSLSDIFKFL 427
            GIV+ +DI + L
Sbjct: 110 VGIVTEADIARHL 122

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 22/137 (16%), Positives = 45/137 (32%), Gaps = 20/137 (14%)

Query: 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA 348
           ++ +     +  +  +ASL   L   V+    S   V      + I    D         
Sbjct: 1   RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSV-VVKEGVRVGIVTTWD--------- 50

Query: 349 YAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVE 408
                   +    A          +E+  +      P  T+ +  E++    V RL++ E
Sbjct: 51  --------VLEAIAEGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEE 102

Query: 409 AGSKRVEGIVSLSDIFK 425
                + G++S +DI +
Sbjct: 103 DD--EIIGVISATDILR 117

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 45.8 bits (107), Expect = 1e-06
 Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 12/145 (8%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAH 351
            R +  +  +++    L++L Q ++   P VD    N  L  I        L +  +   
Sbjct: 18  VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYR 77

Query: 352 INLSEMTIHQALQLGQDSYSPYELRSQRCQM-------CLPSDTLHKVMERLANPGVRRL 404
               E  +        +      + +             +   +L K     +  G+ R 
Sbjct: 78  RQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRA 137

Query: 405 VIVEAGSKRVEGIVSLSDIFKFLLG 429
            +   G  ++ G+V+L++I   + G
Sbjct: 138 YVTSMG--KLVGVVALAEIQAAIEG 160

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 17/137 (12%), Positives = 48/137 (35%), Gaps = 11/137 (8%)

Query: 300 MLRPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHINLSEM 357
           + + S ++     ++ +   S  P+V   ++  L+    R D+    ++       +   
Sbjct: 21  LTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVST 80

Query: 358 TIHQALQLGQDSYSPYELRSQRCQMCL-------PSDTLHKVMERLANPGVRRLVIVEAG 410
           +I    +             +   +             +  V++     G+R+ ++   G
Sbjct: 81  SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG 140

Query: 411 SKRVEGIVSLSDIFKFL 427
             R+ GI++  D+ K +
Sbjct: 141 --RLLGIITKKDVLKHI 155

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 87

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 42.4 bits (99), Expect = 5e-06
 Identities = 7/37 (18%), Positives = 15/37 (40%)

Query: 7  HYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATE 43
             +++F VD E R  +  P  + + G     +   +
Sbjct: 51 GTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQ 87

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 17/135 (12%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 354
                 +  + ++  A+ ++ +  +  + + DDN + + +     I              
Sbjct: 10  NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI-------------- 55

Query: 355 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 414
             +          D      +  +          +  V   L+  G+ R  +V+    RV
Sbjct: 56  --IKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRV 112

Query: 415 EGIVSLSDIFKFLLG 429
            GIV+L+D+ ++L  
Sbjct: 113 VGIVTLTDLSRYLSR 127

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 23/132 (17%)

Query: 209 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCS 268
           V   P D ++DV      +    +PI  +        +L+ I S   I            
Sbjct: 7   VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEEHDRFL 63

Query: 269 SSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 328
             +   +  +   P                       +L  A  +L +++   +PIV++N
Sbjct: 64  EEIMTKREDLVVAP--------------------AGITLKEANEILQRSKKGKLPIVNEN 103

Query: 329 DSLLDIYCRSDI 340
           D L+ I  R+D+
Sbjct: 104 DELVAIIARTDL 115

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 22/128 (17%)

Query: 301 LRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEM 357
           L P   +        +     IPI D       L+ I    DI  L +++    +     
Sbjct: 9   LSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIMT 68

Query: 358 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGI 417
                               +   +     TL +  E L      +L IV      +  I
Sbjct: 69  K------------------REDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DELVAI 109

Query: 418 VSLSDIFK 425
           ++ +D+ K
Sbjct: 110 IARTDLKK 117

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 20/133 (15%)

Query: 295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINL 354
           +  +  +   A L+    ++ +  + S+ +VD N  +  I  R  + A+ K K+      
Sbjct: 11  KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKA- 69

Query: 355 SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRV 414
                              E  +           +   +  +    +R L +V+     +
Sbjct: 70  ------------------EEFMTASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNL 110

Query: 415 EGIVSLSDIFKFL 427
           +GI+S+ DI + +
Sbjct: 111 KGIISIRDITRAI 123

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.0 bits (87), Expect = 3e-04
 Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 26/142 (18%)

Query: 289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC-RSDITALAKDK 347
           K+ +   +   M+  SA++   L+ + Q Q +   + D       +      +       
Sbjct: 2   KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSS 61

Query: 348 AYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIV 407
            +  ++L +  +H                          D +   +          L +V
Sbjct: 62  VFNKVSLPDFFVH------------------------EEDNITHALLLFLEHQEPYLPVV 97

Query: 408 EAGSKRVEGIVSLSDIFKFLLG 429
           +    R++G VSL D  + L+ 
Sbjct: 98  DEE-MRLKGAVSLHDFLEALIE 118

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.8 bits (89), Expect = 3e-04
 Identities = 11/142 (7%), Positives = 47/142 (33%), Gaps = 4/142 (2%)

Query: 287 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 346
           V  + +       ++     +   ++ +++  V+    V  ++ L+ +     +  ++  
Sbjct: 3   VKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 62

Query: 347 KAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVI 406
             +  I   E+       + +                     L + ++ + +  ++ + +
Sbjct: 63  HFFGFIPKEELIRSS---MKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPV 119

Query: 407 VEAGSKRVEGIVSLSDIFKFLL 428
           V+     + G ++  +I   L 
Sbjct: 120 VDE-KGEIVGDLNSLEILLALW 140

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 10/132 (7%), Positives = 38/132 (28%), Gaps = 10/132 (7%)

Query: 296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLS 355
           +   +L     L +A   + +  +  I + ++   +  +    D+ +  +       +  
Sbjct: 9   KNPPILSKEDRLGSAFKKINEGGIGRIIVANEK--IEGLLTTRDLLSTVESYCKDSCSQG 66

Query: 356 EMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVE 415
           ++       +        +  +        +      +  +       L +V+    +  
Sbjct: 67  DLYHISTTPII-------DYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPV 118

Query: 416 GIVSLSDIFKFL 427
           GIV+  +     
Sbjct: 119 GIVTEREFLLLY 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	429
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.92
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.89
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.83
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.82
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.82
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.81
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.8
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.8
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.79
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.79
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.78
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.77
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.77
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.77
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.76
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.76
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.76
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.75
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.75
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.75
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.75
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.73
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.73
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.71
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.71
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.7
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.7
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.7
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.7
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.69
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.69
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.68
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.68
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.68
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.67
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.67
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.66
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.66
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.66
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.65
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.65
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.64
d1z0na1	87	5'-AMP-activated protein kinase subunit beta-1 {Ra	99.64
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.63
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.63
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.62
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.62
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.62
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.61
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.6
d2qlvb1	87	SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}	99.59
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.58
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.57
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.52
d2bhua1	97	Glycosyltrehalose trehalohydrolase, N-terminal dom	94.21

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.92  E-value=1e-24  Score=191.61  Aligned_cols=167  Identities=22%  Similarity=0.418  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHhhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCC
Q 014157           91 QVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHG  170 (429)
Q Consensus        91 ~~~~~~~~~fl~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~  170 (429)
                      +-+.+.+.+||++++|||+||.|+++++++++.||.+|++.|.+++++++||||+++++++|++|..|++.++...+...
T Consensus         7 ~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~   86 (179)
T d2ooxe1           7 KGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSS   86 (179)
T ss_dssp             HHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccc
Confidence            45778999999999999999999999999999999999999999999999999988899999999999999886654322


Q ss_pred             C-CCChhhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEE
Q 014157          171 S-NLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLH  249 (429)
Q Consensus       171 ~-~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvg  249 (429)
                      . .....++.......+......        ...|.++++++.++++|.+|+..|.+++++++||+|.+.+.+ ..+++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~-~~~vvg  157 (179)
T d2ooxe1          87 SFPEAIAEIDKFRLLGLREVERK--------IGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETG-SEMIVS  157 (179)
T ss_dssp             SCGGGGGGGGGSBHHHHHHHHHH--------TTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTC-CEEEEE
T ss_pred             cchhhhhhhhccchhhhccccee--------eeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcC-CCcEEE
Confidence            1 112223333333333332222        225789999999999999999999999999999998432221 237999


Q ss_pred             EEehhhHHHHHHhhccc
Q 014157          250 IASLSGILKCVCRYFRH  266 (429)
Q Consensus       250 ilt~~dIl~~l~~~~~~  266 (429)
                      ++|++||++|++.++++
T Consensus       158 iiT~~dIlk~l~~~~~~  174 (179)
T d2ooxe1         158 VLTQYRILKFISMNCKE  174 (179)
T ss_dssp             EEEHHHHHHHHHTTCGG
T ss_pred             EEeHHHHHHHHHHhhhH
Confidence            99999999999988765

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=7.4e-23  Score=176.03  Aligned_cols=153  Identities=35%  Similarity=0.609  Sum_probs=125.0

Q ss_pred             HHHHHhhhccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCCh
Q 014157           96 RVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE  175 (429)
Q Consensus        96 ~~~~fl~~~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~  175 (429)
                      .+.+||+++|+||+||.+.++++++.+.|+.+|++.|.++++.++||+|.+.++++|++|..|++.++........ ...
T Consensus         5 ~~~~~l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~-~~~   83 (159)
T d2v8qe2           5 VYTTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSAL-VQI   83 (159)
T ss_dssp             HHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHT-TTC
T ss_pred             HHHHHhcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhcccccc-chh
Confidence            4779999999999999999999999999999999999999999999999888999999999999998866542111 111


Q ss_pred             hhhhhhhHHHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhh
Q 014157          176 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG  255 (429)
Q Consensus       176 ~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~d  255 (429)
                      ..........+....          ...+.++++++++++++.+|+.+|.+++++++||+|  .++|   +++|++|++|
T Consensus        84 ~~~~~~~~~~~~~~~----------~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd--~~~g---~~~GivT~~d  148 (159)
T d2v8qe2          84 YELEEHKIETWREVY----------LQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVID--PESG---NTLYILTHKR  148 (159)
T ss_dssp             CCGGGCBHHHHHHHH----------SSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEEC--TTTC---CEEEEECHHH
T ss_pred             hhhhhhhccccccee----------eeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEE--CCCC---eEEEEEeHHH
Confidence            122222333333222          224788999999999999999999999999999995  3556   7999999999


Q ss_pred             HHHHHHhhc
Q 014157          256 ILKCVCRYF  264 (429)
Q Consensus       256 Il~~l~~~~  264 (429)
                      |++|+..+.
T Consensus       149 ilk~l~~~~  157 (159)
T d2v8qe2         149 ILKFLKLFI  157 (159)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHc
Confidence            999998764

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.83  E-value=7e-20  Score=156.25  Aligned_cols=133  Identities=26%  Similarity=0.560  Sum_probs=115.5

Q ss_pred             ccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccccccc
Q 014157          277 PICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSE  356 (429)
Q Consensus       277 ~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~  356 (429)
                      |++++.+|+|.         +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++.........   .+
T Consensus         2 pl~~~~ig~~~---------~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~---~~   69 (153)
T d2ooxe2           2 PLNQMTIGTWS---------NLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSN---LD   69 (153)
T ss_dssp             BGGGTCCSBCS---------SCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGG---GG
T ss_pred             CHHHcCCCCCC---------CCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccc---cc
Confidence            67788888885         6899999999999999999999999999999999999999999998776544322   25


Q ss_pred             ccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          357 MTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       357 ~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                      .++.++|....       .+..++++|.+++++.++++.|.+++++++|||| ++|+++|+||++||++++++
T Consensus        70 ~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          70 LSVGEALLKRP-------ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD-ENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             SBHHHHHHTSC-------CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC-TTCBEEEEEEHHHHHHHHHS
T ss_pred             cchhhheeeee-------cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc-CCCEEEEEEEHHHHHHHHHc
Confidence            68888885432       3356788999999999999999999999999999 58999999999999999863

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=2e-20  Score=153.62  Aligned_cols=121  Identities=17%  Similarity=0.291  Sum_probs=104.8

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      +++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|++........   .....+++++|     
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~---~~~~~~v~~im-----   73 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGL---DPNTATAGELA-----   73 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTC---CTTTSBHHHHH-----
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCC---CcccceEEEEe-----
Confidence            3556688899999999999999999999999999999999999999999999864332222   23356778877     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                              ..++.++++++++.+|++.|.+++++++||+|  +|+++|+||.+||+++|
T Consensus        74 --------~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          74 --------RDSIYYVDANASIQEMLNVMEEHQVRRVPVIS--EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             --------TTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHTC
T ss_pred             --------eccceeeeecchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHhhC
Confidence                    55889999999999999999999999999999  48999999999999975

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.5e-19  Score=151.70  Aligned_cols=136  Identities=27%  Similarity=0.492  Sum_probs=109.2

Q ss_pred             ccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc
Q 014157          273 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI  352 (429)
Q Consensus       273 ~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l  352 (429)
                      ++..|++++..+++.         +++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++......... 
T Consensus         3 ~~~~~i~~l~~~~~~---------~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~-   72 (140)
T d2nyca1           3 FLKIPIGDLNIITQD---------NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND-   72 (140)
T ss_dssp             GGGSBGGGSSCCBCS---------SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC-----
T ss_pred             cccCcHHHhCCccCC---------CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccc-
Confidence            567788888766654         7899999999999999999999999999999999999999999998776543322 


Q ss_pred             ccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          353 NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       353 ~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                        ....+.+.+....       .+..++++|++++++.+|++.|.+.+++++|||| ++|+++|+||.+||+++++
T Consensus        73 --~~~~~~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd-~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          73 --LSLSVGEALMRRS-------DDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             --CCSBHHHHHHHCC-------------CEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             --cccchhhhhhhhh-------hcccccEEECCCCcHHHHHHHHHhcCeeEEEEEe-CCCeEEEEEEHHHHHHHHh
Confidence              2344555553321       2345788999999999999999999999999999 5999999999999999984

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.81  E-value=1.2e-19  Score=152.19  Aligned_cols=125  Identities=20%  Similarity=0.265  Sum_probs=105.9

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc----cccccccHHHHHh
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH----INLSEMTIHQALQ  364 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~----l~l~~~~v~~~l~  364 (429)
                      +++++|.++++++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.........    ......++.++| 
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im-   81 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVM-   81 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHS-
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhHhh-
Confidence            466779899999999999999999999999999999999999999999999997664422110    011234566654 


Q ss_pred             cCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          365 LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                  .+++.+|++++++.+|+++|.+++++++||+|  +|+++|+||++||++++.
T Consensus        82 ------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          82 ------------HTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA--KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             ------------CSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE--TTEEEEEECHHHHHHHHH
T ss_pred             ------------ccccccccccchHHHHHHHHHHcCceEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence                        67899999999999999999999999999999  589999999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.5e-19  Score=152.58  Aligned_cols=138  Identities=33%  Similarity=0.578  Sum_probs=117.0

Q ss_pred             CcccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc
Q 014157          271 LPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA  350 (429)
Q Consensus       271 ~~~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~  350 (429)
                      ..++..+++++.++++.         +++++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++........
T Consensus         4 ~~f~~~~l~~l~i~~~~---------~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~   74 (145)
T d2v8qe1           4 PEFMSKSLEELQIGTYA---------NIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYN   74 (145)
T ss_dssp             CGGGGSBHHHHTCSBCS---------SCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCC
T ss_pred             hHHhhCCHHHHcCCCCC---------CceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhccccc
Confidence            34667888888887664         688999999999999999999999999999999999999999998776554332


Q ss_pred             ccccccccHHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          351 HINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       351 ~l~l~~~~v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      .   ...++.+.+....       .|..++++|.+++++.+++++|.+++++++||+| ++|+++|+||.+||+++|+
T Consensus        75 ~---~~~~v~~~~~~~~-------~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          75 N---LDVSVTKALQHRS-------HYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD-EHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             C---CSSBHHHHGGGCC-------SCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             c---hhhhhhhccchhh-------hccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc-cCCEEEEEEEHHHHHHHHH
Confidence            2   2456777664322       3566888999999999999999999999999999 5899999999999999986

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.80  E-value=6.5e-20  Score=156.80  Aligned_cols=139  Identities=19%  Similarity=0.300  Sum_probs=105.3

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc-cccccHHHH-----
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN-LSEMTIHQA-----  362 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~-l~~~~v~~~-----  362 (429)
                      ++.++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|..|+++........... .........     
T Consensus         5 ~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (156)
T d2yzqa1           5 EIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWILESH   84 (156)
T ss_dssp             BSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC--------------------
T ss_pred             CHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhhhhhh
Confidence            35667999999999999999999999999999999999999999999999997543322111100 000000000     


Q ss_pred             -------HhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          363 -------LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       363 -------l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                             ........+..++|++++.+|.+++++.++++.|.+++++++||+| ++|+++|+||++||+++|+
T Consensus        85 ~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1          85 PTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIR-GEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             ------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTTEEEEEEEHHHHGGGGC
T ss_pred             hhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEe-CCCEEEEEEEHHHHHHHhC
Confidence                   0000112233457888999999999999999999999999999999 5899999999999999985

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.79  E-value=2.1e-19  Score=151.23  Aligned_cols=123  Identities=16%  Similarity=0.275  Sum_probs=106.3

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      +++++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|.+|+++.......   .....+++++|     
T Consensus         4 ~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~---~~~~~~v~~im-----   75 (142)
T d1pvma4           4 RVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK---KPDEVPIRLVM-----   75 (142)
T ss_dssp             BGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCC---CGGGSBGGGTS-----
T ss_pred             EHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhcc---ccccccccccc-----
Confidence            4677799999999999999999999999999999999999999999999999865432211   12245566654     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                              .+++++|++++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus        76 --------~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~~g~l~Giit~~Dil~~l~  126 (142)
T d1pvma4          76 --------RKPIPKVKSDYDVKDVAAYLSENGLERCAVVD-DPGRVVGIVTLTDLSRYLS  126 (142)
T ss_dssp             --------BSSCCEEETTCBHHHHHHHHHHHTCSEEEEEC-TTCCEEEEEEHHHHTTTSC
T ss_pred             --------ccccccccchhhHHHHHHHHHHcCCcEEEEEe-cCCEEEEEEEHHHHHHHHh
Confidence                    67899999999999999999999999999999 5899999999999998763

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.79  E-value=5.6e-19  Score=144.16  Aligned_cols=119  Identities=18%  Similarity=0.275  Sum_probs=105.0

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++++|.++++++++++|+.+|++.|.+++++++||++ +|+++|++|.+||++....+..    +.+.++.++|      
T Consensus         2 V~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~----~~~~~v~~~m------   70 (120)
T d1pbja3           2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDD----LAEVKVWEVM------   70 (120)
T ss_dssp             HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCC----TTTSBHHHHC------
T ss_pred             hHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeecccccccccc----ccceeEeeec------
Confidence            4566889999999999999999999999999999997 5899999999999986654332    3457888876      


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                             .+++.++++++++.+|++.|.+++++++||+|  +|+++|+||.+||+++.+
T Consensus        71 -------~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~--~~~l~Givt~~Dil~A~~  120 (120)
T d1pbja3          71 -------ERDLVTISPRATIKEAAEKMVKNVVWRLLVEE--DDEIIGVISATDILRAKM  120 (120)
T ss_dssp             -------BCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHC
T ss_pred             -------ccccccccchhHHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHhcCC
Confidence                   56899999999999999999999999999987  689999999999999863

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=9.6e-19  Score=145.26  Aligned_cols=120  Identities=19%  Similarity=0.353  Sum_probs=104.7

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++++|.++++++++++++.+|++.|.+++++++||+|++|+++|++|..|+++....+..    ..+.+++++|      
T Consensus         7 V~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~----~~~~~v~~im------   76 (132)
T d2yzia1           7 IKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL----PYDIPVERIM------   76 (132)
T ss_dssp             GGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC----CTTSBGGGTC------
T ss_pred             HHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccC----ccceeEeecc------
Confidence            445588899999999999999999999999999999999999999999999876543322    1245677755      


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                             .+++.++++++++.+|++.|.+++++++||++  +|+++|+||.+||++++.
T Consensus        77 -------~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~--~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          77 -------TRNLITANVNTPLGEVLRKMAEHRIKHILIEE--EGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             -------BCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             -------cccccccCcchHHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence                   66899999999999999999999999999887  699999999999999874

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.77  E-value=8.4e-19  Score=144.61  Aligned_cols=120  Identities=15%  Similarity=0.236  Sum_probs=105.1

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD  368 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~  368 (429)
                      .|+++|.++++++.+++++.+|+++|.+++++++||+| +|+++|++|.+|+++....+..     .+.++.+++     
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~-----~~~~v~~~~-----   73 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS-----LETKAEEFM-----   73 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC-----TTCBGGGTS-----
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhcc-----ccchhhhhh-----
Confidence            35667999999999999999999999999999999998 5899999999999987654322     135666654     


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                              .+++.+|++++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus        74 --------~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd-~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          74 --------TASLITIREDSPITGALALMRQFNIRHLPVVD-DKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             --------EECCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             --------hhhccccccccchhHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHH
Confidence                    56889999999999999999999999999999 5899999999999999874

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.77  E-value=5.7e-19  Score=145.64  Aligned_cols=115  Identities=14%  Similarity=0.292  Sum_probs=98.9

Q ss_pred             CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCCcccc
Q 014157          296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL  375 (429)
Q Consensus       296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~~~~~  375 (429)
                      ++++++.+++++.+|+++|.+++++++||++ +|+++|++|.+|+++.......   ...+.++.++|            
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~---~~~~~~v~~im------------   76 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDK---PVKDTQVKEIM------------   76 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSS---CGGGSBGGGTS------------
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcc---cccceeEeeec------------
Confidence            4788999999999999999999999999998 7899999999999875432211   12245666654            


Q ss_pred             cCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          376 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       376 ~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                       .+++.+|.+++++.+|++.|.+++++++||+|  +|+++|+||.+||++++++
T Consensus        77 -~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~GiIt~~Dil~~~is  127 (127)
T d2rc3a1          77 -TRQVAYVDLNNTNEDCMALITEMRVRHLPVLD--DGKVIGLLSIGDLVKDAIS  127 (127)
T ss_dssp             -BCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             -cceeEEeccCccHHHHHHHHHHCCCcEEEEEE--CCEEEEEEEHHHHHHHHhC
Confidence             67899999999999999999999999999999  5899999999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=1e-19  Score=149.12  Aligned_cols=116  Identities=21%  Similarity=0.308  Sum_probs=85.7

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++++|.++++++++++++.+|++.|.+++++++||+|++|+++|++|.+|++.....          .++.+        
T Consensus         3 v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~~----------~~~~~--------   64 (122)
T d2yzqa2           3 VKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDE----------EQLAM--------   64 (122)
T ss_dssp             HHHHSEESCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC--------------------C--------
T ss_pred             cccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhcc----------cchhh--------
Confidence            345577889999999999999999999999999999999999999999998753221          23333        


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                           +|.+++++|++++++.+|++.|.+++++++|||| ++|+++|+||.+||++++++
T Consensus        65 -----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          65 -----LVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVD-SKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             -----CCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHTTT
T ss_pred             -----ccccceeecchhhHHHHHHHHHHHcCcEEEEEEe-CCCEEEEEEEHHHHHHHHHh
Confidence                 4467899999999999999999999999999999 59999999999999998763

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=7.3e-19  Score=144.95  Aligned_cols=115  Identities=15%  Similarity=0.259  Sum_probs=102.0

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhc-----CCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQA-----QVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  363 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~-----~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l  363 (429)
                      ++|.+|.++++++++++|+.+|++.|.++     +++.+||+|++|+++|+++.+++....          .+.++.++|
T Consensus         2 taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~----------~~~~v~~im   71 (127)
T d2ouxa2           2 TAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND----------DDTLIADIL   71 (127)
T ss_dssp             BHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC----------TTSBHHHHS
T ss_pred             ChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc----------ccEEhhhhc
Confidence            35667999999999999999999999876     478999999999999999999986421          146788877


Q ss_pred             hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          364 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                                   .++++++++++++.+|++.|.+++++++|||| ++|+++|+||..||++++
T Consensus        72 -------------~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD-~~g~lvGiIt~~Dil~~i  121 (127)
T d2ouxa2          72 -------------NERVISVHVGDDQEDVAQTIRDYDFLAVPVTD-YDDHLLGIVTVDDIIDVI  121 (127)
T ss_dssp             -------------BSCCCCEETTSBHHHHHHHHHHHTCSEEEEEC-TTCBEEEEEEHHHHHHHH
T ss_pred             -------------cCCCccCCCCCCHHHHHHHHHHhCCEEEEEEe-CCCEEEEEEEHHHHHHHH
Confidence                         56899999999999999999999999999999 589999999999999876

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=1.8e-18  Score=143.62  Aligned_cols=118  Identities=18%  Similarity=0.199  Sum_probs=100.1

Q ss_pred             CCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-cccccccccHHHHHhcCCCCCCcc
Q 014157          295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHINLSEMTIHQALQLGQDSYSPY  373 (429)
Q Consensus       295 ~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~-~~l~l~~~~v~~~l~~~~~~~~~~  373 (429)
                      ..+++++.+++++.+|+++|.+++++++||+|++|+++|++|.+|+++....... ........+++++|          
T Consensus        11 ~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m----------   80 (132)
T d1yava3          11 ADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVM----------   80 (132)
T ss_dssp             GGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHS----------
T ss_pred             ccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccccc----------
Confidence            4578999999999999999999999999999999999999999999987643221 11123356777766          


Q ss_pred             cccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          374 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       374 ~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                         .+++.++.+++++.++++.|.+++  .+|||| ++|+++|+||.+||++++.
T Consensus        81 ---~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd-~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          81 ---LTDIPRLHINDPIMKGFGMVINNG--FVCVEN-DEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             ---BCSCCEEETTSBHHHHHHHTTTCS--EEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             ---cccccccccchhHHHHHHHHHhCC--EEEEEc-cCCEEEEEEEHHHHHHHHH
Confidence               558999999999999999998765  599999 5899999999999999874

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.76  E-value=2.1e-18  Score=141.94  Aligned_cols=113  Identities=22%  Similarity=0.342  Sum_probs=95.6

Q ss_pred             CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCC
Q 014157          294 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS  371 (429)
Q Consensus       294 ~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~  371 (429)
                      |..+++++.+++++.+|+++|.+++++++||+|+  +|+++|++|.+|+.......         .+....         
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~---------~~~~~~---------   64 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN---------APISEH---------   64 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS---------SBTTTS---------
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC---------Cceeee---------
Confidence            3456789999999999999999999999999996  78999999999997643221         111211         


Q ss_pred             cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                         ++..+++++.+++++.+|+++|.+++++++|||| ++|+++|+||++||++++.
T Consensus        65 ---~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd-~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          65 ---MTSEHLVTAAVGTDLETAERILHEHRIEKLPLVD-NSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             ---CCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEEC-TTSBEEEEEEHHHHHHHHH
T ss_pred             ---eeccceeecCCCCCHHHHHHHHHhcCCcEEEEEc-CCCeEEEEEEHHHHHHHhh
Confidence               2356788999999999999999999999999999 5899999999999999863

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.75  E-value=7.4e-18  Score=144.12  Aligned_cols=139  Identities=17%  Similarity=0.234  Sum_probs=107.5

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHhcccccccc-c--ccccHHHHH
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKDKAYAHIN-L--SEMTIHQAL  363 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~--~g~lvGivt~~Di~~~~~~~~~~~l~-l--~~~~v~~~l  363 (429)
                      +++++|.++++++++++++.+|+++|.+++++++||+|+  ++.++|+++..|++.++......... .  ...+.....
T Consensus        12 ~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~   91 (160)
T d2d4za3          12 QVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIY   91 (160)
T ss_dssp             BTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHH
T ss_pred             EHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccccchhh
Confidence            577889999999999999999999999999999999985  47899999999998765432211100 0  011111111


Q ss_pred             h-----cCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhhC
Q 014157          364 Q-----LGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG  429 (429)
Q Consensus       364 ~-----~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~~  429 (429)
                      .     ..........+|..+++++.+++++.+|+++|.+.+++++||+|  +|+++|+||++||++++.|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d--~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          92 RWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS--MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHHC
T ss_pred             hhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE--CCEEEEEEEHHHHHHHhCC
Confidence            0     01111223346788999999999999999999999999999998  5999999999999999976

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=4e-18  Score=143.66  Aligned_cols=124  Identities=8%  Similarity=0.138  Sum_probs=101.9

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccc-----------ccccc
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN-----------LSEMT  358 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~-----------l~~~~  358 (429)
                      +.++|..+++++.+++++.+|++.|.+++++++||+|++|+++|++|..|+++...........           +...+
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKN   85 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCSSCB
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhccccC
Confidence            4556888999999999999999999999999999999999999999999998765433221111           11112


Q ss_pred             HHHHHhcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          359 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       359 v~~~l~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      +.+             +| .+++++.+++++.+|+++|.+++++++|||| ++|+++|+||.+||+++|.
T Consensus        86 ~~~-------------~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd-~~g~i~Gvit~~dil~~l~  140 (145)
T d1o50a3          86 ASE-------------IM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVD-EKGEIVGDLNSLEILLALW  140 (145)
T ss_dssp             HHH-------------HC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             HHH-------------Hc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEe-CCCeEEEEEEHHHHHHHHH
Confidence            222             22 4567899999999999999999999999999 5999999999999999984

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.9e-18  Score=141.24  Aligned_cols=115  Identities=17%  Similarity=0.241  Sum_probs=101.3

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++++|.++++++.+++|+.+|+++|.+++.+++||+|++|+++|+++.+|+++...          +.++.+++      
T Consensus         3 v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~----------~~~v~~~~------   66 (121)
T d1vr9a3           3 VKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL----------DSSVFNKV------   66 (121)
T ss_dssp             GGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT----------TSBSGGGC------
T ss_pred             chhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhc----------cccccccc------
Confidence            44557789999999999999999999999999999999999999999999974321          24555544      


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                             ..+++++++++++.+++++|.+++..++|||| ++|+++|+||..|+++++.
T Consensus        67 -------~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd-e~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          67 -------SLPDFFVHEEDNITHALLLFLEHQEPYLPVVD-EEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             -------BCTTCCEETTSBHHHHHHHHHHCCCSEEEEEC-TTCBEEEEEEHHHHHHHHH
T ss_pred             -------cCccEEECCCCCHHHHHHHHHhcCceeeeeEC-CCCeEEEEEEHHHHHHHHH
Confidence                   56788999999999999999999999999999 5999999999999999885

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=1.6e-18  Score=145.34  Aligned_cols=125  Identities=10%  Similarity=0.187  Sum_probs=105.8

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc--cccccccccHHHHHhcCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY--AHINLSEMTIHQALQLGQ  367 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~--~~l~l~~~~v~~~l~~~~  367 (429)
                      |+++|.++++++++++|+.+|+++|.+++++++||+|++++++|+++..|+.+.......  ........++.++|    
T Consensus         4 V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im----   79 (141)
T d3ddja1           4 VKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVM----   79 (141)
T ss_dssp             HHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHS----
T ss_pred             eHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHh----
Confidence            345588899999999999999999999999999999999999999999999876533211  11112345667665    


Q ss_pred             CCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          368 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       368 ~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                               .++++++.+++++.+|++.|.+++++++|||| ++|+++|+||++||++++.
T Consensus        80 ---------~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd-~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          80 ---------VTNLVTIDELASVNRAAAEMIVKRIGSLLILN-KDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             ---------BCCCCBCCTTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHHHHH
T ss_pred             ---------CcccccccccchhhHHHHHHHHcCCCEEEEEc-cCCEEEEEEEHHHHHHHHH
Confidence                     66899999999999999999999999999999 5899999999999999875

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=8.1e-19  Score=147.96  Aligned_cols=116  Identities=17%  Similarity=0.264  Sum_probs=100.7

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcC-----CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHH
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL  363 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~-----~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l  363 (429)
                      +++.+|+++++++.+++|+.+|++.|.+++     ++.+||+|++|+++|+++.+|+.....          ..++.++ 
T Consensus         2 taG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~~----------~~~v~~i-   70 (144)
T d2yvxa2           2 EAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVADP----------RTRVAEI-   70 (144)
T ss_dssp             SSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSCT----------TCBSTTT-
T ss_pred             CcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhccc----------ccchHHh-
Confidence            366779999999999999999999997764     789999999999999999999864211          2344544 


Q ss_pred             hcCCCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          364 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                                  |.++++++.+++++.+|++.|.+++++++|||| ++|+++|+||..||++++.
T Consensus        71 ------------m~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd-~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          71 ------------MNPKVVYVRTDTDQEEVARLMADYDFTVLPVVD-EEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             ------------SBSSCCCEESSCCHHHHHHHHHHSCCSEEEEEC-SSCBEEEEEEHHHHHHHHH
T ss_pred             ------------cccCCccCCCCChHHHHHHHHHHcCCCEEEEEe-ECCEEEEEEEHHHHHHHHH
Confidence                        467899999999999999999999999999999 5899999999999999874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.73  E-value=6e-18  Score=140.08  Aligned_cols=119  Identities=17%  Similarity=0.233  Sum_probs=100.9

Q ss_pred             ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEE--CCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcC
Q 014157          289 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG  366 (429)
Q Consensus       289 ~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVv--d~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~  366 (429)
                      +++++|.++++++++++++.+|++.|.+++++++||+  |.+++++|+++..|+++....+....     ....      
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~-----~~~~------   70 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD-----GPAM------   70 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTT-----SBSG------
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccc-----cccc------
Confidence            3567799999999999999999999999999999999  55789999999999998765533211     1111      


Q ss_pred             CCCCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          367 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       367 ~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                              .+..++.++.+++++.+|+++|.+++++++|||| ++|+++|+||..||++++
T Consensus        71 --------~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd-~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          71 --------PIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVN-KNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             --------GGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHHSCH
T ss_pred             --------cccccceeEeeecchHHHHHHHHHCCeEEEEEEc-CCCeEEEEEEHHHHHHHH
Confidence                    1245788999999999999999999999999999 599999999999999764

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.71  E-value=1.6e-17  Score=136.85  Aligned_cols=118  Identities=15%  Similarity=0.227  Sum_probs=101.3

Q ss_pred             CCCCccCCCCceecCCCCcHHHHHHHHHhcC-----CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCc
Q 014157          198 DSHGKAFPRPLVYAGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP  272 (429)
Q Consensus       198 ~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~-----i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~  272 (429)
                      +++|.+|.+++++++++.|+.+|++.|.+++     ++.+||+|   +++   +++|+++..+++.             .
T Consensus         1 ~taG~iM~~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd---~~~---~l~G~v~~~~l~~-------------~   61 (127)
T d2ouxa2           1 ETAGAIMTTEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD---QEN---HLVGVISLRDLIV-------------N   61 (127)
T ss_dssp             TBHHHHCBSCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEEC---TTC---BEEEEEEHHHHTT-------------S
T ss_pred             CChhHhCCCCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEe---cCC---eEEEEEEeecccc-------------c
Confidence            3578899999999999999999999998874     78999996   556   7999999988853             1


Q ss_pred             ccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          273 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       273 ~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      ....+++            ++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++++.+
T Consensus        62 ~~~~~v~------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          62 DDDTLIA------------DILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             CTTSBHH------------HHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cccEEhh------------hhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            1123333            4488899999999999999999999999999999999999999999999987754

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.71  E-value=5.3e-17  Score=133.61  Aligned_cols=121  Identities=21%  Similarity=0.307  Sum_probs=103.5

Q ss_pred             CCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc
Q 014157          199 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI  278 (429)
Q Consensus       199 ~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v  278 (429)
                      .++++|+++++++++++|+.+|+++|.+++++++||++    ++   +++|++|..|+++++.....        ...++
T Consensus         5 ~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d----~~---~~~Givt~~dl~~~~~~~~~--------~~~~v   69 (127)
T d2ef7a1           5 IVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD----GN---KPVGIITERDIVKAIGKGKS--------LETKA   69 (127)
T ss_dssp             BGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHHHTTCC--------TTCBG
T ss_pred             CHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeec----cc---chhhhcchhHHHHHHHhhcc--------ccchh
Confidence            34567999999999999999999999999999999995    35   79999999999988764321        12233


Q ss_pred             ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          279 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       279 ~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      +            ++|.+++.++.+++++.+|++.|.+++++++||+|++|+++|++|..||++.+.+
T Consensus        70 ~------------~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          70 E------------EFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             G------------GTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             h------------hhhhhhccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            3            3367789999999999999999999999999999999999999999999987643

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.70  E-value=2.4e-17  Score=138.74  Aligned_cols=118  Identities=15%  Similarity=0.281  Sum_probs=102.2

Q ss_pred             CCCCccCCCCceecCCCCcHHHHHHHHHhcC-----CceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCc
Q 014157          198 DSHGKAFPRPLVYAGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP  272 (429)
Q Consensus       198 ~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~-----i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~  272 (429)
                      |++|.+|+++++++++++|+.+|++.|.+++     ++.+||+|   +++   +++|+++.+|++..             
T Consensus         1 dtaG~iM~~~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd---~~~---~l~G~v~~~dl~~~-------------   61 (144)
T d2yvxa2           1 DEAGGLMTPEYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD---EKG---RLKGVLSLRDLIVA-------------   61 (144)
T ss_dssp             SSSGGGCBSCCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBC---TTC---BBCCBCBHHHHTTS-------------
T ss_pred             CCcccccCCCCEEECCCCcHHHHHHHHHHhcccccceeeeEEec---CCC---CEecccchhhhhhc-------------
Confidence            5789999999999999999999999998774     78899996   566   89999999998531             


Q ss_pred             ccCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          273 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       273 ~l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      ....            .+.++|.++++++.+++++.+|++.|.+++++++||||++|+++|+||.+||++++..
T Consensus        62 ~~~~------------~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          62 DPRT------------RVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CTTC------------BSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             cccc------------chHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence            1112            2444588899999999999999999999999999999999999999999999987654

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.70  E-value=7.3e-19  Score=143.47  Aligned_cols=114  Identities=18%  Similarity=0.252  Sum_probs=60.8

Q ss_pred             CCCceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCCCC
Q 014157          295 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS  371 (429)
Q Consensus       295 ~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~---~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~~~  371 (429)
                      .++++++.+++++.+|+++|.+++++++||+|+   +++++|++|.+|+....... .      +.++.+.+        
T Consensus         3 ~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~-~------~~~~~~~~--------   67 (120)
T d1jr1a4           3 ITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEE-H------DRFLEEIM--------   67 (120)
T ss_dssp             ECTTCC----CCCC--CCBC---------------CTTCCC-----------------------------CC--------
T ss_pred             ccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccc-c------CceeEEEE--------
Confidence            346789999999999999999999999999985   67999999999986433221 1      23334333        


Q ss_pred             cccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHh
Q 014157          372 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL  427 (429)
Q Consensus       372 ~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l  427 (429)
                         .+..+++++.+++++.+|+++|.+++++++|||| ++|+++|+||++||++..
T Consensus        68 ---~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd-~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          68 ---TKREDLVVAPAGITLKEANEILQRSKKGKLPIVN-ENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             ---SBTTTSCCEETTCCHHHHHHHTCSCC---CEEEE-TTTEEEEEECHHHHHHHH
T ss_pred             ---eeccCceEECCCCCHHHHHHHHHHcCccEEEEEc-CCCEEEEEEEHHHhhhcc
Confidence               2245788999999999999999999999999999 589999999999999863

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.70  E-value=7e-17  Score=135.01  Aligned_cols=127  Identities=19%  Similarity=0.280  Sum_probs=103.6

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCc-ccCCccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP-ILKLPIC  279 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~-~l~~~v~  279 (429)
                      .++|+++++++.+++|+.+|++.|.+++++++||+|   +++   +++|++|..|+++++............ ....+  
T Consensus         5 ~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd---~~~---~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~--   76 (139)
T d2o16a3           5 EDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVD---ANK---KLLGIVSQRDLLAAQESSLQRSAQGDSLAFETP--   76 (139)
T ss_dssp             GGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHHHCC---------CCCB--
T ss_pred             HHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeec---ccc---cccccccHHHHHHHHHhhhhhhhcccccccccc--
Confidence            457889999999999999999999999999999996   456   799999999999988765432111000 11222  


Q ss_pred             cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          280 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       280 ~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                                ++++|.++++++++++++.+|+++|.+++++++||+| +|+++|+||.+||++...+
T Consensus        77 ----------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~~~~  132 (139)
T d2o16a3          77 ----------LFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVA-KDVLVGIITDSDFVTIAIN  132 (139)
T ss_dssp             ----------HHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEE-TTEEEEEECHHHHHHHHHH
T ss_pred             ----------hhHhhccccccccccchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                      3444788999999999999999999999999999998 5899999999999987654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.70  E-value=1.5e-17  Score=138.27  Aligned_cols=129  Identities=9%  Similarity=0.120  Sum_probs=101.4

Q ss_pred             cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhcCCCC
Q 014157          290 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS  369 (429)
Q Consensus       290 v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~~~~~  369 (429)
                      ++++|.++++++.+++++.+|++.|.+++++++||+|+  +++|+++..++++...........  ........     .
T Consensus         3 V~~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~   73 (135)
T d3ddja2           3 IETLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTVESYCKDSCS--QGDLYHIS-----T   73 (135)
T ss_dssp             GGGTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGGTTCC---CC--HHHHHHHH-----T
T ss_pred             eeEEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhhccccccchh--hhhccccc-----c
Confidence            55668889999999999999999999999999999974  699999999998765432211100  00001111     0


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      ....++|..++.+|.+++++.+|++.|.+++++++||+| ++|+++|+||.+||++++.
T Consensus        74 ~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd-~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          74 TPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVD-INDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             SBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEEC-TTSCEEEEEEHHHHGGGGG
T ss_pred             CCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEe-CCCEEEEEEEHHHHHHHHH
Confidence            112345677899999999999999999999999999999 5999999999999999874

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=3.4e-17  Score=139.55  Aligned_cols=137  Identities=13%  Similarity=0.185  Sum_probs=102.4

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCC------cc-
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL------PI-  273 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~------~~-  273 (429)
                      .++|.++++++.+++++.+|+++|.+++++++||+|   ++|   +++|++|..|+++.+...........      .. 
T Consensus         7 ~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd---~~~---~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
T d2yzqa1           7 EPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVD---SEG---NLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWI   80 (156)
T ss_dssp             TTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEEC---TTS---CEEEEEEGGGGGGCGGGCC----------------
T ss_pred             HHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEe---CCC---CceeEEeeeechhhhcccccccccccccchhhhhh
Confidence            457999999999999999999999999999999996   456   79999999999865432211100000      00 


Q ss_pred             ----cCCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          274 ----LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       274 ----l~~~v~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                          -...............++++|.+++.++.+++++.++++.|.+++++++||+|++|+++|++|++||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          81 LESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                0000111111122335678899999999999999999999999999999999999999999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=1.9e-16  Score=133.10  Aligned_cols=135  Identities=13%  Similarity=0.204  Sum_probs=103.0

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      ++|..+++++.+++++.+|++.|.+++++++||+|   +++   +++|++|..||++++....................+
T Consensus         8 ~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd---~~~---~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (145)
T d1o50a3           8 KLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVA---RDN---KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL   81 (145)
T ss_dssp             TSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEE---ETT---EEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC
T ss_pred             HhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEec---cCc---ceeeeeccchhhhhhhcccccccchhHHHHhhhhhc
Confidence            36889999999999999999999999999999997   456   899999999999988765432211111111111111


Q ss_pred             cCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 014157          282 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK  347 (429)
Q Consensus       282 ~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~~  347 (429)
                      .    ...+.++| .+++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+..+
T Consensus        82 ~----~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          82 I----AKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             S----SCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             c----ccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence            1    11122334 3567899999999999999999999999999999999999999999877543

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=8.9e-17  Score=137.37  Aligned_cols=127  Identities=19%  Similarity=0.247  Sum_probs=97.9

Q ss_pred             CCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhccccccc----ccccccHHHHHhcCCCCC
Q 014157          296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHI----NLSEMTIHQALQLGQDSY  370 (429)
Q Consensus       296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~~~~l----~l~~~~v~~~l~~~~~~~  370 (429)
                      .++++++.++++.+|++.|.+++++++||+|+ +++++|+++..|++...........    .............     
T Consensus        23 ~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   97 (159)
T d2v8qe2          23 SKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKIETWREV-----   97 (159)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBHHHHHHH-----
T ss_pred             CceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhcccccce-----
Confidence            36789999999999999999999999999975 6899999999999876543211100    0000111111000     


Q ss_pred             CcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          371 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       371 ~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                       ...+|..++++|++++++.+|+++|.+++++++||+|+++|+++|+||.+||+++|.
T Consensus        98 -~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2          98 -YLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             -HSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHH
T ss_pred             -eeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHH
Confidence             112567789999999999999999999999999999855789999999999999873

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=2.8e-17  Score=134.51  Aligned_cols=118  Identities=19%  Similarity=0.269  Sum_probs=98.0

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +++|.++++++.+++++.+|++.|.+++++++||+|   +++   +++|++|.+||++.+......      ....    
T Consensus         4 ~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd---~~~---~~~Giit~~Di~~~~~~~~~~------~~~~----   67 (123)
T d1y5ha3           4 RDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICG---DDD---RLHGMLTDRDIVIKGLAAGLD------PNTA----   67 (123)
T ss_dssp             HHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEEC---GGG---BEEEEEEHHHHHHTTGGGTCC------TTTS----
T ss_pred             HHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEe---ccc---hhhhhhhhhhHhhhhhhcCCC------cccc----
Confidence            446889999999999999999999999999999996   446   799999999998754332111      1111    


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                              .++++|.++++++.+++++.+|++.|.+++++++||+| +|+++|+||..||++.
T Consensus        68 --------~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          68 --------TAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRLVGIVTEADIARH  121 (123)
T ss_dssp             --------BHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHT
T ss_pred             --------eEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEE-CCEEEEEEEHHHHHhh
Confidence                    23344778899999999999999999999999999998 5899999999999874

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.68  E-value=1e-16  Score=134.46  Aligned_cols=120  Identities=14%  Similarity=0.180  Sum_probs=101.6

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +++|.++++++++++|+.+|++.|.+++++.+||++   +++   +++|++|.+|+++.+......      ....    
T Consensus         6 ~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d---~~~---~~~Giit~~di~~~~~~~~~~------~~~~----   69 (142)
T d1pvma4           6 EKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKD---DNG---NDVGLLSERSIIKRFIPRNKK------PDEV----   69 (142)
T ss_dssp             GGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEEC---TTS---CEEEEEEHHHHHHHTGGGCCC------GGGS----
T ss_pred             HHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeec---cCC---cccceEEeechhhhhhhhccc------cccc----
Confidence            457899999999999999999999999999999996   456   799999999998766432111      1111    


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                              .++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|..||++.+
T Consensus        70 --------~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          70 --------PIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             --------BGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTS
T ss_pred             --------ccccccccccccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHH
Confidence                    23444778999999999999999999999999999999999999999999998754

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.67  E-value=3.8e-16  Score=128.16  Aligned_cols=116  Identities=16%  Similarity=0.237  Sum_probs=95.0

Q ss_pred             CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccC
Q 014157          204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  283 (429)
Q Consensus       204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  283 (429)
                      |..+++++++++|+.+|+++|.+++++++||+|. ..++   +++|++|.+||.+....            ..+.     
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~-~~~~---~lvGivt~~Di~~~~~~------------~~~~-----   61 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET-LANR---KLVGIITNRDMRFISDY------------NAPI-----   61 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC-TTTC---BEEEEEEHHHHHHCSCS------------SSBT-----
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee-ccCC---eEEEEeEHHHHHHhhcc------------CCce-----
Confidence            5567789999999999999999999999999962 2345   79999999999752110            1111     


Q ss_pred             cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          284 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       284 ~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                            ....+..+++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++....
T Consensus        62 ------~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          62 ------SEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             ------TTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ------eeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence                  112255678899999999999999999999999999999999999999999987653

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=1.9e-16  Score=131.08  Aligned_cols=130  Identities=18%  Similarity=0.211  Sum_probs=105.6

Q ss_pred             ccccccCCCCccEEEEcCCCCHHHHHHHHHHcCCcEeeeeccCCCeeeEeeeHHHHHHHHHHHhcCCCCCChhhhhhhhH
Q 014157          104 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTI  183 (429)
Q Consensus       104 ~~~~d~~p~s~~vv~l~~~~~v~~A~~~m~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i  183 (429)
                      .|+-++|..+.+|+.++++.|+.+|++.|.+++++++||+|.+ ++++|++|..|++..+...    .....+.+...++
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~----~~~~~~~~~~~~v   76 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGL----ERIEFEKLDQITV   76 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCS----SSBCGGGTTTSBH
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhcc----ccccccccccccc
Confidence            5677888888999999999999999999999999999999965 8999999999999876321    1111233333333


Q ss_pred             HHHHHhhhhhhcccCCCCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhh
Q 014157          184 SAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY  263 (429)
Q Consensus       184 ~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~  263 (429)
                      +.                 +|.++++++.+++++.+|+.+|.+++  .+||+|   ++|   +++|++|.+||++++.++
T Consensus        77 ~~-----------------~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd---~~~---~~~Givt~~dil~~l~~~  131 (132)
T d1yava3          77 EE-----------------VMLTDIPRLHINDPIMKGFGMVINNG--FVCVEN---DEQ---VFEGIFTRRVVLKELNKH  131 (132)
T ss_dssp             HH-----------------HSBCSCCEEETTSBHHHHHHHTTTCS--EEEEEC---TTC---BEEEEEEHHHHHHHHHHH
T ss_pred             cc-----------------cccccccccccchhHHHHHHHHHhCC--EEEEEc---cCC---EEEEEEEHHHHHHHHHhh
Confidence            33                 36789999999999999999998765  499996   456   899999999999998764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=5e-16  Score=128.54  Aligned_cols=120  Identities=17%  Similarity=0.297  Sum_probs=101.4

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +++|+++++++++++|+.+|++.|.+++++++||+|   +++   +++|++|..||++.+.....       ....+   
T Consensus         8 ~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd---~~~---~~~Giit~~di~~~~~~~~~-------~~~~~---   71 (132)
T d2yzia1           8 KVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIN---DDG---NVVGFFTKSDIIRRVIVPGL-------PYDIP---   71 (132)
T ss_dssp             GGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHTTTTCC-------CTTSB---
T ss_pred             HHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEec---ccc---eeeeeeeHHHHHHHHhhccC-------cccee---
Confidence            346899999999999999999999999999999996   456   79999999999986653210       11223   


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                               ++++|.+++.++.+++++.+|++.|.+++++++||++ +|+++|++|.+|+++....
T Consensus        72 ---------v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~  127 (132)
T d2yzia1          72 ---------VERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRR  127 (132)
T ss_dssp             ---------GGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             ---------EeecccccccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                     3444788999999999999999999999999999875 7999999999999987655

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=3.7e-16  Score=130.63  Aligned_cols=126  Identities=17%  Similarity=0.189  Sum_probs=97.0

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +..+.++++++.+++++.+|+++|.+++++++||+|   +++   +++|++|..|+++++........      ...+..
T Consensus        12 ~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd---~~~---~~vG~it~~Di~~~~~~~~~~~~------~~~~~~   79 (140)
T d2nyca1          12 NIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIID---ENG---YLINVYEAYDVLGLIKGGIYNDL------SLSVGE   79 (140)
T ss_dssp             SCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEC---TTC---BEEEEEEHHHHHHHHHTC----C------CSBHHH
T ss_pred             CCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEe---cCC---eEcceehhhHHHHHHhhcccccc------ccchhh
Confidence            345788999999999999999999999999999996   456   79999999999998876543211      111111


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                      ..      .....+..+++++.+++++.+|++.|.+++++++||+|++|+++|+||.+|+++.+
T Consensus        80 ~~------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1          80 AL------MRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             HH------HHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHH
T ss_pred             hh------hhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHH
Confidence            10      01112345688999999999999999999999999999999999999999999865

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.66  E-value=1.5e-16  Score=133.18  Aligned_cols=125  Identities=12%  Similarity=0.187  Sum_probs=103.8

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  282 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  282 (429)
                      +|+++++++++++|+.+|+++|.+++++++||++   +++   +++|+++..|+++++......... ......++    
T Consensus         7 iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~---~~~---~~~g~i~~~di~~~~~~~~~~~~~-~~~~~~~v----   75 (141)
T d3ddja1           7 FMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVID---DDN---KVVGIVTVVNAIKQLAKAVDKLDP-DYFYGKVV----   75 (141)
T ss_dssp             HSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEEC---TTS---CEEEEEEHHHHHHHHHHHHHHTCT-HHHHTCBH----
T ss_pred             hCcCCCeEEcCcCcHHHHHHHHHHcCCCeeeccc---ccC---ccccccccccchhhhhcccccccc-ccccCCCH----
Confidence            5888999999999999999999999999999996   445   799999999999988654322110 01122333    


Q ss_pred             CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          283 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       283 i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                              +++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+||++.+.+
T Consensus        76 --------~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          76 --------KDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             --------HHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             --------HHHhCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHH
Confidence                    34478899999999999999999999999999999999999999999999986644

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.65  E-value=3.9e-16  Score=126.96  Aligned_cols=115  Identities=16%  Similarity=0.281  Sum_probs=99.0

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      ++|+++++++++++|+.+|++.|.+++++.+||.+    ++   +++|++|.+||++++.....       ....+++++
T Consensus         4 diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~----~~---~~~Gvit~~Di~~~l~~~~~-------~~~~~v~~~   69 (120)
T d1pbja3           4 DVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK----EG---VRVGIVTTWDVLEAIAEGDD-------LAEVKVWEV   69 (120)
T ss_dssp             HHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE----TT---EEEEEEEHHHHHHHHHHTCC-------TTTSBHHHH
T ss_pred             HhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEe----CC---cEEEEEEeeecccccccccc-------ccceeEeee
Confidence            36899999999999999999999999999999995    35   79999999999998875421       122334443


Q ss_pred             cCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          282 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       282 ~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                                  |.+++.++++++++.+|++.|.+++++++||++ +|+++|++|.+|++++
T Consensus        70 ------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A  118 (120)
T d1pbja3          70 ------------MERDLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRA  118 (120)
T ss_dssp             ------------CBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ------------cccccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhc
Confidence                        778899999999999999999999999999986 6899999999999875

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.65  E-value=9.8e-16  Score=130.62  Aligned_cols=141  Identities=11%  Similarity=0.064  Sum_probs=107.3

Q ss_pred             CCccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcc-
Q 014157          200 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI-  278 (429)
Q Consensus       200 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v-  278 (429)
                      ++++|.++++++++++|+.+|+++|.+++++++||++ +.+++   .++|+++..|+++.+.................. 
T Consensus        13 V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd-~~~~~---~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~~   88 (160)
T d2d4za3          13 VGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVD-TPDTN---TLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTLE   88 (160)
T ss_dssp             TTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEES-CTTTC---BEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBHH
T ss_pred             HHHhcCCCCeEECCCCcHHHHHHHHHhcCCCcccccc-ccccc---cccccchHHHHHHHHhhccccccccchhhccccc
Confidence            4568999999999999999999999999999999997 33445   799999999999988765432111000000000 


Q ss_pred             -----ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          279 -----CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       279 -----~~l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                           ...........+++.|.+.++++.+++++.+|+++|.+++++++||++ +|+++|+||++||++++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3          89 EIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             HHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             hhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence                 000011112235567888999999999999999999999999999998 699999999999998753

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.64  E-value=1.3e-15  Score=125.12  Aligned_cols=113  Identities=16%  Similarity=0.335  Sum_probs=95.0

Q ss_pred             CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCcc
Q 014157          206 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT  285 (429)
Q Consensus       206 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~  285 (429)
                      ++++++++++|+.+|+++|.+++++++||++    ++   +++|++|..||++.+.....      .....         
T Consensus        13 ~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~----~~---~~vGiit~~Di~~~~~~~~~------~~~~~---------   70 (127)
T d2rc3a1          13 HTVVAIGPDDSVFNAMQKMAADNIGALLVMK----DE---KLVGILTERDFSRKSYLLDK------PVKDT---------   70 (127)
T ss_dssp             CCCCEECTTSBHHHHHHHHHHHTCSEEEEEE----TT---EEEEEEEHHHHHHHGGGSSS------CGGGS---------
T ss_pred             CccEEECCcCcHHHHHHHHHHcCCCEEEEEE----CC---eEEEEEEccchhhhhhhhcc------cccce---------
Confidence            5789999999999999999999999999995    35   79999999999876542211      11122         


Q ss_pred             cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 014157          286 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA  344 (429)
Q Consensus       286 ~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~  344 (429)
                         .+.++|.+++.++.+++++.+|+++|.+++++++||+| +|+++|+||.+|+++..
T Consensus        71 ---~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~  125 (127)
T d2rc3a1          71 ---QVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDA  125 (127)
T ss_dssp             ---BGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ---eEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHH
Confidence               23444788999999999999999999999999999998 69999999999999754

>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: 5'-AMP-activated protein kinase subunit beta-1
species: Rattus norvegicus [TaxId: 10116]

Probab=99.64  E-value=7e-17  Score=123.07  Aligned_cols=46  Identities=35%  Similarity=0.672  Sum_probs=44.0

Q ss_pred             cccCCceeEEEEEECCeeeecCCCCcccCCCCCcceEEEecCCCCC
Q 014157            2 FFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATEPNFM   47 (429)
Q Consensus         2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~~n~~~~~~~~~~   47 (429)
                      ++||||.|||||+|||+|++||+.|++.|..|+.||+|.|+++|.+
T Consensus        40 l~L~~G~y~YKFiVDG~w~~d~~~~~~~d~~G~~Nnvi~V~~~D~~   85 (87)
T d1z0na1          40 LDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNIIQVKKTDFE   85 (87)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEEECTTSCEEEEEEECSCTTE
T ss_pred             EECCCceEEEEEEECCEEEeCCCCCeeECCCCCEEEEEEECCCccc
Confidence            6899999999999999999999999999999999999999998864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.63  E-value=4.9e-16  Score=135.35  Aligned_cols=129  Identities=13%  Similarity=0.216  Sum_probs=96.7

Q ss_pred             CCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhccc-ccccc-----cccccHHHHHhcCCC
Q 014157          296 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKA-YAHIN-----LSEMTIHQALQLGQD  368 (429)
Q Consensus       296 ~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~-~g~lvGivt~~Di~~~~~~~~-~~~l~-----l~~~~v~~~l~~~~~  368 (429)
                      .++++++++.++.+|++.|.+++++++||+|+ +++++|++|..|+++.+.... .....     +...........   
T Consensus        30 ~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---  106 (179)
T d2ooxe1          30 FRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGLREV---  106 (179)
T ss_dssp             EEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSBHHHHHHH---
T ss_pred             CcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccchhhhccc---
Confidence            36899999999999999999999999999985 689999999999987553211 10000     000111111000   


Q ss_pred             CCCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCC----CCeEEEEEeHHHHHHHhh
Q 014157          369 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG----SKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       369 ~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~----~g~l~GiIs~~Dil~~l~  428 (429)
                       ......|..++++|.++++|.+|++.|.+++++++||+|++    +++++|+||++||+++|.
T Consensus       107 -~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1         107 -ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             -HHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             -ceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence             00112467899999999999999999999999999999842    237999999999999985

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.63  E-value=1.5e-15  Score=123.58  Aligned_cols=115  Identities=12%  Similarity=0.184  Sum_probs=98.9

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +++|.+++.++.+++|+.+|+++|.+++.+.+||+|   +++   +++|+++..|++++             ....+   
T Consensus         4 ~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd---~~~---~~~Gii~~~dl~~~-------------~~~~~---   61 (121)
T d1vr9a3           4 KKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKD---REG---HFRGVVNKEDLLDL-------------DLDSS---   61 (121)
T ss_dssp             GGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEEC---TTS---BEEEEEEGGGGTTS-------------CTTSB---
T ss_pred             hhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEe---CCc---eeEEEeehhhhhhh-------------hcccc---
Confidence            346889999999999999999999999999999996   456   89999999999631             11222   


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                               +.++|..++.++++++++.++++.|.+++..++||+|++|+++|+||..|+++...+
T Consensus        62 ---------v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          62 ---------VFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             ---------SGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ---------ccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHH
Confidence                     333367788999999999999999999999999999999999999999999987654

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.62  E-value=2.5e-16  Score=130.80  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=102.1

Q ss_pred             ccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccc
Q 014157          202 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI  281 (429)
Q Consensus       202 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l  281 (429)
                      ++|.++++++.+++++.+|++.|.+++++++||+|    +    +++|+++..++++++........         ....
T Consensus         5 ~lM~~~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d----~----~lvg~~~~~~~~~~~~~~~~~~~---------~~~~   67 (135)
T d3ddja2           5 TLMIKNPPILSKEDRLGSAFKKINEGGIGRIIVAN----E----KIEGLLTTRDLLSTVESYCKDSC---------SQGD   67 (135)
T ss_dssp             GTCEESCCEECTTSBHHHHHHHTTGGGCCEEEEES----S----SEEEEEEHHHHHGGGTTCC---C---------CHHH
T ss_pred             EEeeCCCeEECCCCcHHHHHHHHHHhCCeEEEEEe----c----ceeceeeccchhhhhccccccch---------hhhh
Confidence            46888899999999999999999999999999995    2    59999999999987653321110         0000


Q ss_pred             cCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          282 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       282 ~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      ........++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|+||.+|++++..+
T Consensus        68 ~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          68 LYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             HHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGGG
T ss_pred             ccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            00011224566688899999999999999999999999999999999999999999999987653

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=8.4e-16  Score=132.69  Aligned_cols=128  Identities=13%  Similarity=0.214  Sum_probs=94.3

Q ss_pred             eeecCCCCHHHHHHHHHhcCCCEEEEE--CCCCcEEEEEeHHHHHHHHhcccccccccccccHHHHHhc-------CCCC
Q 014157          299 AMLRPSASLSAALNLLVQAQVSSIPIV--DDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL-------GQDS  369 (429)
Q Consensus       299 ~~v~~~~sl~~a~~~m~~~~~~~lpVv--d~~g~lvGivt~~Di~~~~~~~~~~~l~l~~~~v~~~l~~-------~~~~  369 (429)
                      +.+.+++|+.+|+++|.+++++++||+  +++++++|++|.+||+....................+...       ....
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPT   99 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTTCCCC
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhccccc
Confidence            445678899999999999999999999  4578999999999999766432221111101111000000       0001


Q ss_pred             CCcccccCCCceEEcCCCCHHHHHHHHHcCCCCEEEEEeCCCCeEEEEEeHHHHHHHhh
Q 014157          370 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL  428 (429)
Q Consensus       370 ~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~v~~l~VVd~~~g~l~GiIs~~Dil~~l~  428 (429)
                      ....++|.+++.+|.+++++.+++++|.+.+++++||+|  +|+++|+||++||++++.
T Consensus       100 ~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d--~g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1         100 LKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH--NGRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             EECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEHHHHHHHHH
T ss_pred             cchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE--CCEEEEEEEHHHHHHHHH
Confidence            112346788899999999999999999999999999988  689999999999999874

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=2.6e-16  Score=128.47  Aligned_cols=112  Identities=16%  Similarity=0.215  Sum_probs=82.0

Q ss_pred             cCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccccc
Q 014157          203 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP  282 (429)
Q Consensus       203 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~  282 (429)
                      +|.++++++++++++.+|+++|.+++++++||+|   ++|   +++|++|.+|++....             ..      
T Consensus         6 iM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd---~~~---~~~G~it~~dl~~~~~-------------~~------   60 (122)
T d2yzqa2           6 IMTQNPVTITLPATRNYALELFKKYKVRSFPVVN---KEG---KLVGIISVKRILVNPD-------------EE------   60 (122)
T ss_dssp             HSEESCCCEESSCC------------CCEEEEEC---TTC---CEEEEEESSCC--------------------------
T ss_pred             ccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEe---ccc---cchhhhhcchhhhhhc-------------cc------
Confidence            5788999999999999999999999999999996   456   8999999999875211             11      


Q ss_pred             CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          283 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       283 i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                            .++++|.++++++.+++++.+|+++|.+++++++||+|++|+++|++|.+||++...
T Consensus        61 ------~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          61 ------QLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             ---------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTT
T ss_pred             ------chhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence                  233447778999999999999999999999999999999999999999999987543

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.61  E-value=2.3e-15  Score=124.21  Aligned_cols=118  Identities=15%  Similarity=0.229  Sum_probs=98.3

Q ss_pred             CccCCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCcccc
Q 014157          201 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA  280 (429)
Q Consensus       201 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~  280 (429)
                      +++|.++++++++++|+.+|++.|.+++++++||++.+ ..+   +++|+++..++++++.......        .... 
T Consensus         4 ~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d-~~~---~~iGi~~~~dl~~~~~~~~~~~--------~~~~-   70 (131)
T d2riha1           4 SELLKRPPVSLPETATIREVATELAKNRVGLAVLTARD-NPK---RPVAVVSERDILRAVAQRLDLD--------GPAM-   70 (131)
T ss_dssp             GGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEE---EEEEEEEHHHHHHHHHTTCCTT--------SBSG-
T ss_pred             HHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEc-CCC---EEEEEEeeeccccccccccccc--------cccc-
Confidence            45789999999999999999999999999999999632 334   7999999999998876542211        0111 


Q ss_pred             ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          281 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       281 l~i~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                                  .+..++.++.+++++.+|+++|.+++++++||+|++|+++|+||..||++.
T Consensus        71 ------------~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          71 ------------PIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             ------------GGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             ------------cccccceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence                        133467789999999999999999999999999999999999999999864

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.60  E-value=5.5e-15  Score=125.34  Aligned_cols=124  Identities=19%  Similarity=0.222  Sum_probs=100.1

Q ss_pred             CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccCc
Q 014157          205 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG  284 (429)
Q Consensus       205 ~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~  284 (429)
                      .++++++.+++|+.+|+++|.+++++++||+|   +++   +++|++|..||++++......      ....++.+..  
T Consensus        11 ~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd---~~~---~~vG~it~~Dl~~~~~~~~~~------~~~~~v~~~~--   76 (153)
T d2ooxe2          11 WSNLATASMETKVYDVIKMLAEKNISAVPIVN---SEG---TLLNVYESVDVMHLIQDGDYS------NLDLSVGEAL--   76 (153)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEC---GGG---BEEEEEEHHHHHHHHGGGCGG------GGGSBHHHHH--
T ss_pred             CCCCeEEeCcCcHHHHHHHHHHcCcceEeeec---ccc---eEEEEEEeeeeeehhcccccc------ccccchhhhe--
Confidence            56899999999999999999999999999996   445   799999999999887654221      1122232221  


Q ss_pred             ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          285 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       285 ~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                          .....+..+++++.+++++.++++.|.+++++++||+|++|+++|+||++|+++....
T Consensus        77 ----~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          77 ----LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             ----HTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred             ----eeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHc
Confidence                1122245678899999999999999999999999999999999999999999986643

>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: AMPK-beta glycogen binding domain-like
domain: SIP2
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.59  E-value=3.7e-16  Score=119.26  Aligned_cols=42  Identities=17%  Similarity=0.288  Sum_probs=40.5

Q ss_pred             cccCCceeEEEEEECCeeeecCCCCcccCCCCCcceEEEecC
Q 014157            2 FFYIVHYVQYKFCVDGEWRHDEHQPFISSEYGIVNTVLLATE   43 (429)
Q Consensus         2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~~~~~g~~~n~~~~~~   43 (429)
                      ++||||.|+|||+|||+|++||+.|++.|++|+.||+|.|++
T Consensus        46 l~l~~G~y~YKFiVDG~w~~d~~~p~~~d~~G~~nnvi~V~~   87 (87)
T d2qlvb1          46 LRLLPGTHRFRFIVDNELRVSDFLPTATDQMGNFVNYIEVRQ   87 (87)
T ss_dssp             EEECSEEEEEEEEETTEEECCTTSCEEBCSSCCCEEEEEECC
T ss_pred             EeCCCCCEEEEEEECCcEEcCCCCCeeECCCCCEeEEEEEEC
Confidence            689999999999999999999999999999999999999974

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4.4e-15  Score=124.65  Aligned_cols=124  Identities=16%  Similarity=0.191  Sum_probs=99.3

Q ss_pred             CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccC
Q 014157          204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  283 (429)
Q Consensus       204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  283 (429)
                      +.++++++.+++|+.+|+++|.+++++++||+|   +++   +++|++|..|+++++......      ....++...  
T Consensus        18 ~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd---~~~---~~~Gvit~~di~~~l~~~~~~------~~~~~v~~~--   83 (145)
T d2v8qe1          18 TYANIAMVRTTTPVYVALGIFVQHRVSALPVVD---EKG---RVVDIYSKFDVINLAAEKTYN------NLDVSVTKA--   83 (145)
T ss_dssp             BCSSCCCEETTCBHHHHHHHHHHHCCSEEEEEC---TTS---BEEEEEEGGGTGGGGGSSCCC------CCSSBHHHH--
T ss_pred             CCCCceEEcCcCcHHHHHHHHHHcCCCcccccc---cCC---ceEEEEEcchhhhhhhccccc------chhhhhhhc--
Confidence            346789999999999999999999999999996   456   799999999998766432211      112222221  


Q ss_pred             cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 014157          284 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK  345 (429)
Q Consensus       284 ~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~  345 (429)
                          ......|..+++++.+++++.+++++|.+++++++||+|++|+++|+||.+||++++.
T Consensus        84 ----~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          84 ----LQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             ----GGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             ----cchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHH
Confidence                1123336678889999999999999999999999999999999999999999998654

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.57  E-value=1e-16  Score=130.54  Aligned_cols=117  Identities=23%  Similarity=0.311  Sum_probs=60.3

Q ss_pred             CCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCcccCCccccccC
Q 014157          204 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV  283 (429)
Q Consensus       204 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i  283 (429)
                      |.++++++.|++|+.+|+++|.+++++++||++.....+   +++|++|.+|+.......          ...++...  
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~---~lvGivT~~Di~~~~~~~----------~~~~~~~~--   66 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGS---RLVGIISSRDIDFLKEEE----------HDRFLEEI--   66 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTT---CCC--------------------------------C--
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCC---eEeeeeeeeeeeehhccc----------cCceeEEE--
Confidence            456678999999999999999999999999996323345   799999999985332211          11111111  


Q ss_pred             cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 014157          284 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL  343 (429)
Q Consensus       284 ~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~  343 (429)
                         +     .+.++++++.+++++.+|+++|.+++++++||+|++|+++|+||++||++.
T Consensus        67 ---~-----~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          67 ---M-----TKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             ---C-----SBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             ---E-----eeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence               1     134568899999999999999999999999999999999999999999864

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1e-13  Score=119.31  Aligned_cols=133  Identities=11%  Similarity=0.114  Sum_probs=100.3

Q ss_pred             eecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCCeEEEEEehhhHHHHHHhhcccCCCCCc----cc-CCccccccC
Q 014157          209 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP----IL-KLPICAIPV  283 (429)
Q Consensus       209 i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~~~~~~lvgilt~~dIl~~l~~~~~~~~~~~~----~l-~~~v~~l~i  283 (429)
                      +.+.++.|+.+|.++|.+++++++||++ +.+++   +++|++|.+||++++............    .+ .........
T Consensus        20 v~~~~~~tv~~a~~ll~~~~~~~~PVV~-~~~~~---~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (169)
T d2j9la1          20 VLTQDSMTVEDVETIISETTYSGFPVVV-SRESQ---RLVGFVLRRDLIISIENARKKQDGVVSTSIIYFTEHSPPLPPY   95 (169)
T ss_dssp             CEESSCEEHHHHHHHHHHCCCSEEEEES-CTTTC---BEEEEEEHHHHHHHHHHHHTSCSCCCTTCEEECSSSCCCCCTT
T ss_pred             EECCCcCCHHHHHHHHHHcCCCceeeee-cCCCC---eEEEEEEhHHHHHHHhcccccccccccchhhhhcccchhhhhc
Confidence            4567888999999999999999999996 23455   799999999999988654322111000    00 011111122


Q ss_pred             cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 014157          284 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD  346 (429)
Q Consensus       284 ~~~~~~v~~~~~~~~~~v~~~~sl~~a~~~m~~~~~~~lpVvd~~g~lvGivt~~Di~~~~~~  346 (429)
                      ......++++|.++++++.+++++.+++++|.+++.+++||++ +|+++|+||++||++.+.+
T Consensus        96 ~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          96 TPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             CCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             cccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            2233457788888999999999999999999999999999987 7899999999999987754

>d2bhua1 b.1.18.2 (A:14-110) Glycosyltrehalose trehalohydrolase, N-terminal domain N {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Glycosyltrehalose trehalohydrolase, N-terminal domain N
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.21  E-value=0.018  Score=42.70  Aligned_cols=27  Identities=22%  Similarity=0.173  Sum_probs=21.4

Q ss_pred             cccCCceeEEEEEECCeeeecCCCCccc
Q 014157            2 FFYIVHYVQYKFCVDGEWRHDEHQPFIS   29 (429)
Q Consensus         2 ~~l~~g~~~ykf~vdg~w~~~~~~~~~~   29 (429)
                      +.+.+|.+ |||.|||.|+-||-.....
T Consensus        58 ~~~~~G~~-Y~y~vdg~~~~DPyar~~~   84 (97)
T d2bhua1          58 LPVGPGAR-YLFVLDGVPTPDPYARFLP   84 (97)
T ss_dssp             ESCCTTCE-EEEEETTEEECCTTCSCCT
T ss_pred             cCCCCCCE-EEEEECCeEccCCchhcCC
Confidence            45678876 9999999999988765543