Citrus Sinensis ID: 014188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSPIPSPQSSGDFSGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRKLRRRSHHSL
Secondary Structure (PSIPRED)
cccccEEEEEEcccccccccccccccccccccccccEEEEEEcccccccEEEccccccccccccccccEEEEEccHHHHHHHcccccccccccEEEEEEEEcccccccccccccEEEEEEEEEEcccccccccEEEEEcEEEcccccccccccccEEEEEEEEcccccEEEEEccccccccEEEEEEccccccEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHccccccccccccccccccccEEEEEEcccccccccccccHHHHHHHcccccccEEEEEEEEccccccEEEEEEEEEEcccccEEEEEccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEEEEcHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEcccEEEccccccccccccccccccccEEEEEccccccEEEEcccccccccccccccccEEEEccHHHHHHHHccccccccccEEEEEEEEcccccccccccccEEEEEEEEEEcHHHcccccEEEEccEEEEccccccccccccEEEEEEEEcccccEEEEEccccccccEEEEEEccccccEEEEEEccccccccccccccccccccccHHHHHcccccccEEEEEEccccHHEEHHccccccccccccccccccccEEEEEEcccccccccccccHHHHHHHcccccccEEEEEEEccccccccEEEEEEEEEcccccEEEEEccccccccccccccccccccccccccccccEEEEEEEcccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDPQAFIRLSIGslglripgsalnsaesgihafsspclceirlrgfpvqttqvplvsspealpdihsIASSfyleesdlkalltpgcfysphaYLEVVVFTgrkgfhcgvgikrhqigtfklevgpewgegkpiilfngwigigknkqetgkpgaelhlkvkldpdpryvfqfedvtmlsPQIVQLqgsikqpifsckfsrdrgpqvdllssywsgsvdcnaLETERRERKGWKVKIHDLSGSAVAAAfittpfvpstgcdwvarsnpgawlivrpdacraeswqpwgkleawrergirdsvccRFHLLSEGQEAGEVLMSEILISAEkggeffidtdkqlrtatspipspqssgdfsglgpvIGGFVMCCrvqgegkrskpMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRklrrrshhsl
Flexible Loop (DISEMBL)
MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRGPQVdllssywsgsvdcNALETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATspipspqssgdFSGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFrrklrrrshhsl
Low Complexity Region (SEG)
MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSPIPSPQSSGDFSGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFrrklrrrshhsl
Disordered region (IsUnstruct)
*****FIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKN*********ELHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDT********************SGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPF************
Disordered Region (DISOPRED)
*DPQAFIRLSIGSLGL*******************PCLCEIRLRGFPVQTTQVPL************IASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWI****************HLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKF**********************************KVKIHDLSGSAVAAAFITTPFVPST******RSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEI****EKGGEFFIDT*********************GLGPVIGGFV****************QLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRKLRRR*****
Disordered Region (DISEMBL)
MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTA**********GDFSGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRR**********
Disordered Region (DISPRO)
*DPQAFIRLSIGSLGLRIPGS*********HAFSSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSR****************************RKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDK****************DFSGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRKLRRRSHHS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSPIPSPQSSGDFSGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRKLRRRSHHSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
225436208	430	PREDICTED: uncharacterized protein LOC10	1.0	0.997	0.860	0.0
147781020	430	hypothetical protein VITISV_014976 [Viti	0.979	0.976	0.866	0.0
224124006	428	predicted protein [Populus trichocarpa]	0.997	1.0	0.853	0.0
255565980	427	conserved hypothetical protein [Ricinus	0.995	1.0	0.862	0.0
356520711	431	PREDICTED: uncharacterized protein LOC10	0.997	0.993	0.796	0.0
449454544	428	PREDICTED: uncharacterized protein LOC10	0.997	1.0	0.822	0.0
356504488	432	PREDICTED: uncharacterized protein LOC10	1.0	0.993	0.800	0.0
110349911	433	putative stress-induced protein [Solanum	0.962	0.953	0.792	0.0
15238004	432	uncharacterized protein [Arabidopsis tha	0.962	0.956	0.786	0.0
297811913	432	hypothetical protein ARALYDRAFT_909762 [	0.962	0.956	0.781	0.0

>gi|225436208|ref|XP_002268337.1| PREDICTED: uncharacterized protein LOC100245378 [Vitis vinifera]

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/430 (86%), Positives = 395/430 (91%), Gaps = 1/430 (0%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPE 60
           MDPQAFIRLSIGSLGLRIPG ALN+A+SGIHA  SPC CEIRLRGFPVQT+ VPLVSSPE
Sbjct: 1   MDPQAFIRLSIGSLGLRIPGPALNAAKSGIHAVPSPCSCEIRLRGFPVQTSSVPLVSSPE 60

Query: 61  ALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTF 120
           A PD HSIASSFYLEESDLKALL PGCFY+PHA LE+VVFTGRKG HCGVGIKR QIGTF
Sbjct: 61  ATPDSHSIASSFYLEESDLKALLAPGCFYAPHACLEIVVFTGRKGSHCGVGIKRQQIGTF 120

Query: 121 KLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLS 180
           KLEVGPEWGE KP+ILF+GWIGIGKNKQE+GKPGAELHL+VKLDPDPRYVFQFEDV   S
Sbjct: 121 KLEVGPEWGEKKPVILFHGWIGIGKNKQESGKPGAELHLRVKLDPDPRYVFQFEDVATSS 180

Query: 181 PQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDL 240
           PQIVQLQG+IKQPIFSCKFSRDR  QVD LS+YWSGS D +  ETERRERKGWKVKIHDL
Sbjct: 181 PQIVQLQGTIKQPIFSCKFSRDRVSQVDPLSTYWSGSADSSEQETERRERKGWKVKIHDL 240

Query: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRD 300
           SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACR ESWQPWGKLEAWRERGIRD
Sbjct: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRPESWQPWGKLEAWRERGIRD 300

Query: 301 SVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLR-TATSPIPSPQSSGDFSG 359
           S+CCRFHLLSEGQ+ GE+LMSEI I+AEKGGEFFIDTD+Q+R  AT+PIPSPQSSGDF+ 
Sbjct: 301 SICCRFHLLSEGQDGGELLMSEIFINAEKGGEFFIDTDRQVRAAATTPIPSPQSSGDFAA 360

Query: 360 LGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRR 419
           L P +GGFVM CRVQGEGK SKP+VQLA+RH+TCVEDAAIFMALAAAVDLSIEACRPFRR
Sbjct: 361 LAPAVGGFVMSCRVQGEGKSSKPLVQLAIRHITCVEDAAIFMALAAAVDLSIEACRPFRR 420

Query: 420 KLRRRSHHSL 429
           K RR + HSL
Sbjct: 421 KFRRGNCHSL 430

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147781020|emb|CAN65847.1| hypothetical protein VITISV_014976 [Vitis vinifera]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/421 (86%), Positives = 389/421 (92%), Gaps = 1/421 (0%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPE 60
           MDPQAFIRLSIGSLGLRIPG ALN+A+SGIHA  SPC CEIRLRGFPVQT+ VPLVSSPE
Sbjct: 1   MDPQAFIRLSIGSLGLRIPGPALNAAKSGIHAVPSPCSCEIRLRGFPVQTSSVPLVSSPE 60

Query: 61  ALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTF 120
           A PD HSIASSFYLEESDLKALL PGCFY+PHA LE+VVFTGRKG HCGVGIKR QIGTF
Sbjct: 61  ATPDSHSIASSFYLEESDLKALLAPGCFYAPHACLEIVVFTGRKGSHCGVGIKRQQIGTF 120

Query: 121 KLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLS 180
           KLEVGPEWGE KP+ILF+GWIGIGKNKQE+GKPGAELHL+VKLDPDPRYVFQFEDV   S
Sbjct: 121 KLEVGPEWGEKKPVILFHGWIGIGKNKQESGKPGAELHLRVKLDPDPRYVFQFEDVATSS 180

Query: 181 PQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDL 240
           PQIVQLQG+IKQPIFSCKFSRDR  QVD LS+YWSGS D +  ETERRERKGWKVKIHDL
Sbjct: 181 PQIVQLQGTIKQPIFSCKFSRDRVSQVDPLSTYWSGSADSSEQETERRERKGWKVKIHDL 240

Query: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRD 300
           SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACR ESWQPWGKLEAWRERGIRD
Sbjct: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRPESWQPWGKLEAWRERGIRD 300

Query: 301 SVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLR-TATSPIPSPQSSGDFSG 359
           S+CCRFHLLSEGQ+ GE+LMSEI I+AEKGGEFFIDTD+Q+R  AT+PIPSPQSSGDF+ 
Sbjct: 301 SICCRFHLLSEGQDGGELLMSEIFINAEKGGEFFIDTDRQVRAAATTPIPSPQSSGDFAA 360

Query: 360 LGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRR 419
           L P +GGFVM CRVQGEGK SKP+VQLA+RH+TCVEDAAIFMALAAAVDLSIEACRPFRR
Sbjct: 361 LAPAVGGFVMSCRVQGEGKSSKPLVQLAIRHITCVEDAAIFMALAAAVDLSIEACRPFRR 420

Query: 420 K 420
           K
Sbjct: 421 K 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124006|ref|XP_002319218.1| predicted protein [Populus trichocarpa] gi|222857594|gb|EEE95141.1| predicted protein [Populus trichocarpa]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/429 (85%), Positives = 392/429 (91%), Gaps = 1/429 (0%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPE 60
           MDPQAFIRLSIGSLGLRI G+ LNSA+SG+ AFSSPC CEIRLRGFPVQT  VPL+SSPE
Sbjct: 1   MDPQAFIRLSIGSLGLRISGTTLNSAQSGLQAFSSPCSCEIRLRGFPVQTIAVPLLSSPE 60

Query: 61  ALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTF 120
             P+IHSIAS FYLEESDLKALLTPGCFY+  A LE+ VFTGRKG HCGVGIKR QIGTF
Sbjct: 61  VAPEIHSIASIFYLEESDLKALLTPGCFYANQACLEIAVFTGRKGSHCGVGIKRQQIGTF 120

Query: 121 KLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLS 180
           KLEVGPEWGEGKP+ILF+GWIGIGKNK+E+GKP AELHL+VKLDPDPRYVFQFEDVT  S
Sbjct: 121 KLEVGPEWGEGKPVILFSGWIGIGKNKKESGKPRAELHLRVKLDPDPRYVFQFEDVTTSS 180

Query: 181 PQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDL 240
           PQIVQLQGSIKQPIFSCKFSRDR  QVD LS+YWS S D   +ETER+ERKGWKVKIHDL
Sbjct: 181 PQIVQLQGSIKQPIFSCKFSRDRVTQVDPLSTYWSTSDDGADVETERKERKGWKVKIHDL 240

Query: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRD 300
           SGSAVAA FITTPFVP+TGCDWVARSNPGAWLIVRPDACR +SWQPWGKLEAWRERGIRD
Sbjct: 241 SGSAVAATFITTPFVPATGCDWVARSNPGAWLIVRPDACRPDSWQPWGKLEAWRERGIRD 300

Query: 301 SVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSPIPSPQSSGDFSGL 360
           S+CCRFHLLSEGQE GEVLMSEILISAEKGGEFFIDTD+QLRTA +PIPSPQSSGDFSGL
Sbjct: 301 SICCRFHLLSEGQEGGEVLMSEILISAEKGGEFFIDTDRQLRTAAAPIPSPQSSGDFSGL 360

Query: 361 GPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRK 420
            P++ GF+M CRVQGEGK +KP+VQLAMRHVTCVEDAAIFMALAAAVDLSI ACRPFRRK
Sbjct: 361 SPIV-GFIMSCRVQGEGKHNKPLVQLAMRHVTCVEDAAIFMALAAAVDLSIVACRPFRRK 419

Query: 421 LRRRSHHSL 429
           LR+ S HSL
Sbjct: 420 LRKGSRHSL 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565980|ref|XP_002523978.1| conserved hypothetical protein [Ricinus communis] gi|223536705|gb|EEF38346.1| conserved hypothetical protein [Ricinus communis]

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/429 (86%), Positives = 392/429 (91%), Gaps = 2/429 (0%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPE 60
           MDPQAFIRLSIGSLGLRIPG+A+NS +SGIH FS PC CEIRLRGFPVQTT VP VSSPE
Sbjct: 1   MDPQAFIRLSIGSLGLRIPGTAINSTKSGIHTFS-PCSCEIRLRGFPVQTTSVPFVSSPE 59

Query: 61  ALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTF 120
           A PDIHSI+SSFYLEESDLKALL PGCFY+ HA LE+VVFTGRKG HCGVGIK+ QIGTF
Sbjct: 60  AAPDIHSISSSFYLEESDLKALLEPGCFYTHHACLEIVVFTGRKGSHCGVGIKKQQIGTF 119

Query: 121 KLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLS 180
           KLEVGPEWGEGKP+ILFNGWIGIGKNKQE+ KPGAELHL+VKLDPDPRYVFQFEDVT  S
Sbjct: 120 KLEVGPEWGEGKPVILFNGWIGIGKNKQESKKPGAELHLRVKLDPDPRYVFQFEDVTTSS 179

Query: 181 PQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDL 240
           PQIVQLQGSI+QPIFSCKFSRDR PQVD LS YWS S D   +ETERRERKGWKVKIHDL
Sbjct: 180 PQIVQLQGSIRQPIFSCKFSRDRVPQVDPLSIYWSTSADGIDMETERRERKGWKVKIHDL 239

Query: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRD 300
           SGSAVAAAFITTPFVPSTGCDWVA+SNPGAWLIVRPD CR ESWQPWGKLEAWRERGIRD
Sbjct: 240 SGSAVAAAFITTPFVPSTGCDWVAKSNPGAWLIVRPDMCRPESWQPWGKLEAWRERGIRD 299

Query: 301 SVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSPIPSPQSSGDFSGL 360
           S+CCRFHLLSE QE GEVLMSEI ++AEKGGEFFIDTD+Q++ A +PIPSPQSSGDFSGL
Sbjct: 300 SICCRFHLLSESQEGGEVLMSEIFMNAEKGGEFFIDTDRQMQAAATPIPSPQSSGDFSGL 359

Query: 361 GPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRK 420
           GP  GGFVM CRVQGEGK SKP+VQLAMRHVTCVEDAAIFMALAAAVDLSI ACRPFRR+
Sbjct: 360 GPA-GGFVMSCRVQGEGKHSKPLVQLAMRHVTCVEDAAIFMALAAAVDLSIVACRPFRRR 418

Query: 421 LRRRSHHSL 429
           LRR S HSL
Sbjct: 419 LRRGSRHSL 427

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520711|ref|XP_003529004.1| PREDICTED: uncharacterized protein LOC100788522 [Glycine max]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/432 (79%), Positives = 380/432 (87%), Gaps = 4/432 (0%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPE 60
           MDPQAFIRLSIGSLGLR  G  L++A+SGI   S PC+CEIRLRGFPVQT+ +PL+SS E
Sbjct: 1   MDPQAFIRLSIGSLGLRCTGIELSTAKSGIQTLSLPCVCEIRLRGFPVQTSSIPLISSTE 60

Query: 61  ALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTF 120
            +PD  ++ASSFYLEES+LKALL PGCFY+ H  LE+ VF+GRKG HCGVG KR QIG F
Sbjct: 61  VIPDTQNVASSFYLEESNLKALLAPGCFYNTHTCLEIAVFSGRKGSHCGVGNKRQQIGIF 120

Query: 121 KLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLS 180
           K++VGPEWGEGKP+ILFNGWIGIGKNKQE GKPGAELHLKVKLDPDPRYVF FED+T LS
Sbjct: 121 KMQVGPEWGEGKPVILFNGWIGIGKNKQENGKPGAELHLKVKLDPDPRYVFLFEDITTLS 180

Query: 181 PQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDL 240
           PQIVQLQGSIKQPIFSCKFS+DR  Q+D LS+YWSGS D + LETERRERKGWKV IHDL
Sbjct: 181 PQIVQLQGSIKQPIFSCKFSKDRVSQIDPLSAYWSGSNDISDLETERRERKGWKVTIHDL 240

Query: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRD 300
           SGSAVAAAFITTPFVPS+GCDWVARSNPG+WLIVRPD  R+ESWQPWGKLEAWRERGIRD
Sbjct: 241 SGSAVAAAFITTPFVPSSGCDWVARSNPGSWLIVRPDLGRSESWQPWGKLEAWRERGIRD 300

Query: 301 SVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLR---TATSPIPSPQSSGDF 357
           +VCCRFHLLSE Q  GE LMSEI ISAEKGGEFFIDT+K ++   TA SPIPSPQSSGDF
Sbjct: 301 TVCCRFHLLSEAQ-GGEFLMSEIHISAEKGGEFFIDTEKHMQTVATAASPIPSPQSSGDF 359

Query: 358 SGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPF 417
             L P++GGFVM CRVQGEGKRSKP+VQLAMRHVTCVEDAAIFMALAA+VDLSI AC+PF
Sbjct: 360 GALSPLVGGFVMSCRVQGEGKRSKPLVQLAMRHVTCVEDAAIFMALAASVDLSIVACKPF 419

Query: 418 RRKLRRRSHHSL 429
           RRK+RR   HS+
Sbjct: 420 RRKVRRGFWHSM 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454544|ref|XP_004145014.1| PREDICTED: uncharacterized protein LOC101209874 [Cucumis sativus] gi|449470622|ref|XP_004153015.1| PREDICTED: uncharacterized protein LOC101204096 [Cucumis sativus] gi|449498951|ref|XP_004160679.1| PREDICTED: uncharacterized protein LOC101224857 [Cucumis sativus]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/428 (82%), Positives = 384/428 (89%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPE 60
           MDPQAFIRLSIGSLGLRIPG++LNS + G++AFSSPC CEIRLRGFP+QT+ +PLV SPE
Sbjct: 1   MDPQAFIRLSIGSLGLRIPGTSLNSTKPGVNAFSSPCSCEIRLRGFPMQTSSIPLVPSPE 60

Query: 61  ALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTF 120
           A+PD H IASSFYLEESDLKALL PGCFY+ HA LE+ VF+GRKG HCGVGIKR  IGTF
Sbjct: 61  AIPDSHGIASSFYLEESDLKALLAPGCFYNTHACLEISVFSGRKGSHCGVGIKRQLIGTF 120

Query: 121 KLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLS 180
           KL+V PEWG+GKP+ILFNGWIGIGK+K E G+ GAELHL+VKLDPDPRYVFQF+DVT  S
Sbjct: 121 KLDVSPEWGDGKPVILFNGWIGIGKSKNENGRHGAELHLRVKLDPDPRYVFQFQDVTRSS 180

Query: 181 PQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDL 240
           PQ+VQL+GSIKQPIFSCKFSRDR  Q D LS+YWSG  D + LE ERRERKGWKVKIHDL
Sbjct: 181 PQVVQLRGSIKQPIFSCKFSRDRVSQADSLSNYWSGLGDGSDLEVERRERKGWKVKIHDL 240

Query: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRD 300
           SGSAVAAAFITTPFVPSTGCDWVARSNPG+WLIVRPD C  ESWQPWGKLEAWRERGIRD
Sbjct: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGSWLIVRPDVCIPESWQPWGKLEAWRERGIRD 300

Query: 301 SVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSPIPSPQSSGDFSGL 360
           +VCCRFHLLSE QE GE+LMSEI I+AEKGGEFFIDTDKQLR ATSPIPSPQSSGDF+ L
Sbjct: 301 TVCCRFHLLSEAQEGGELLMSEIHINAEKGGEFFIDTDKQLRAATSPIPSPQSSGDFAAL 360

Query: 361 GPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRK 420
           G V+GGFVM CRVQGEG+ SKP VQLAMRHVTC+EDAAIFMALAAAVDLSIEACRPFRRK
Sbjct: 361 GQVVGGFVMSCRVQGEGRSSKPTVQLAMRHVTCIEDAAIFMALAAAVDLSIEACRPFRRK 420

Query: 421 LRRRSHHS 428
           +RR   HS
Sbjct: 421 IRRTPRHS 428

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504488|ref|XP_003521028.1| PREDICTED: uncharacterized protein LOC100815012 [Glycine max]

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/432 (80%), Positives = 380/432 (87%), Gaps = 3/432 (0%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPE 60
           MDPQAFIRLSIGSLGLR  G  L++ +SGI   S PC+CEIRLRGFPVQT+ VP++SS E
Sbjct: 1   MDPQAFIRLSIGSLGLRCTGIELSTTKSGIQTLSLPCVCEIRLRGFPVQTSSVPVISSTE 60

Query: 61  ALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTF 120
            +PD  ++A SFYLEESDLKALL PGCFY+ HA LE+ VF+GRKG HCGVG KR QIG F
Sbjct: 61  VIPDTQNVAFSFYLEESDLKALLAPGCFYNTHACLEIAVFSGRKGSHCGVGNKRQQIGIF 120

Query: 121 KLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLS 180
           +++VGPEWGEGKP+ILFNGWIGIGKNKQ+ GKPGAELHLKVKLDPDPRYVFQFED+T LS
Sbjct: 121 RMQVGPEWGEGKPVILFNGWIGIGKNKQDNGKPGAELHLKVKLDPDPRYVFQFEDITTLS 180

Query: 181 PQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIHDL 240
           PQIVQLQGSIKQPIFSCKFS+DR  Q+D LS+YWSGS D + LETERRERKGWKV IHDL
Sbjct: 181 PQIVQLQGSIKQPIFSCKFSKDRVSQIDSLSAYWSGSNDISDLETERRERKGWKVTIHDL 240

Query: 241 SGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRD 300
           SGSAVAAAFITTPFVPS+GCDWVARSNPG+WLIVRPD  R+ESWQPWGKLEAWRERGIRD
Sbjct: 241 SGSAVAAAFITTPFVPSSGCDWVARSNPGSWLIVRPDIGRSESWQPWGKLEAWRERGIRD 300

Query: 301 SVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLR---TATSPIPSPQSSGDF 357
           +VCCRFHLLSE QE GE LMSEI ISAEKGGEFFIDT+K +R   TA SPIPSPQSSGDF
Sbjct: 301 TVCCRFHLLSEAQEGGEFLMSEIHISAEKGGEFFIDTEKHMRTVATAASPIPSPQSSGDF 360

Query: 358 SGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPF 417
             L P++GGFVM CRVQGEGKRSKP VQLAMRHVTCVEDAAIFMALAAAVDLSI AC+PF
Sbjct: 361 GALSPLVGGFVMSCRVQGEGKRSKPSVQLAMRHVTCVEDAAIFMALAAAVDLSIVACKPF 420

Query: 418 RRKLRRRSHHSL 429
           RRK+RR   HS+
Sbjct: 421 RRKVRRGFWHSM 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110349911|emb|CAJ19269.1| putative stress-induced protein [Solanum commersonii]

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/419 (79%), Positives = 368/419 (87%), Gaps = 6/419 (1%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPE 60
           MDPQAFIRLSIGSLGLR+ G+ LN  +SGI A SSPC+CEIRLRGFPVQT+ VPL+SSPE
Sbjct: 1   MDPQAFIRLSIGSLGLRLSGTTLNGTKSGISALSSPCVCEIRLRGFPVQTSSVPLISSPE 60

Query: 61  ALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGTF 120
           A  D ++IASSFYLEESDLKALL PGCFY+PHA LE+VVFTG KG HCGVGIKR Q+GTF
Sbjct: 61  ATVDNYNIASSFYLEESDLKALLEPGCFYAPHACLEIVVFTGHKGGHCGVGIKRQQVGTF 120

Query: 121 KLEVGPEWG---EGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVT 177
           KL + P W    E + + L NGWIGIGKNKQ+TGKPGAELHL+VKLDPDPRYVFQFED T
Sbjct: 121 KLILRPSWSGVMESQSLCL-NGWIGIGKNKQDTGKPGAELHLRVKLDPDPRYVFQFEDKT 179

Query: 178 MLSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKI 237
            LSPQIVQLQG+IKQPIFSCKFS DR   VD L+++WS SVD + L+ E+RER+GWKVKI
Sbjct: 180 KLSPQIVQLQGNIKQPIFSCKFSHDRVSPVDPLNNFWSNSVDGSELDVEKRERRGWKVKI 239

Query: 238 HDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERG 297
           HDLSGSAVAAAFITTPFVPSTGCDWVA+SNPGAWLIV PD CR   WQPWGKLEAWRERG
Sbjct: 240 HDLSGSAVAAAFITTPFVPSTGCDWVAKSNPGAWLIVHPDVCRPGCWQPWGKLEAWRERG 299

Query: 298 IRDSVCCRFHLLSEGQE-AGEVLMSEILIS-AEKGGEFFIDTDKQLRTATSPIPSPQSSG 355
           IRD++CCRFHLLSEGQE  G++LMSEILIS AEKGGEF+IDTD+Q+R ATSP+PSP+SSG
Sbjct: 300 IRDTICCRFHLLSEGQENGGDLLMSEILISAAEKGGEFYIDTDRQVRAATSPLPSPRSSG 359

Query: 356 DFSGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEAC 414
           DF+ L PV GGFVM CRVQGEGK SKP+VQLAMRHVTCVEDAAIFMALAAAVDLSIEAC
Sbjct: 360 DFAALSPVAGGFVMSCRVQGEGKCSKPLVQLAMRHVTCVEDAAIFMALAAAVDLSIEAC 418

Source: Solanum commersonii

Species: Solanum commersonii

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238004|ref|NP_197266.1| uncharacterized protein [Arabidopsis thaliana] gi|9755789|emb|CAC01908.1| putative protein [Arabidopsis thaliana] gi|119935833|gb|ABM06007.1| At5g17640 [Arabidopsis thaliana] gi|332005068|gb|AED92451.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/421 (78%), Positives = 359/421 (85%), Gaps = 8/421 (1%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHA--FSSPCLCEIRLRGFPVQTTQVPLVSS 58
           MDPQAFIRLS+GSL LRIP   +NS         FSS C CEI+LRGFPVQTT +PL+ S
Sbjct: 1   MDPQAFIRLSVGSLALRIPKVLINSTSKSNEKKNFSSQCSCEIKLRGFPVQTTSIPLMPS 60

Query: 59  PEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIG 118
            +A PD HSI++SFYLEESDL+ALLTPGCFYSPHA+LE+ VFTG+K  +CGVG KR QIG
Sbjct: 61  LDAAPDHHSISTSFYLEESDLRALLTPGCFYSPHAHLEISVFTGKKSLNCGVGGKRQQIG 120

Query: 119 TFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTM 178
            FKLEVGPEWGEGKP+ILFNGWI IGK K++     AELHLKVKLDPDPRYVFQFEDVT 
Sbjct: 121 MFKLEVGPEWGEGKPMILFNGWISIGKTKRDGA---AELHLKVKLDPDPRYVFQFEDVTT 177

Query: 179 LSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIH 238
           LSPQIVQL+GS+KQPIFSCKFSRDR  QVD L+ YWS S D   LE+ERRERKGWKVKIH
Sbjct: 178 LSPQIVQLRGSVKQPIFSCKFSRDRVSQVDPLNGYWSSSGDGTELESERRERKGWKVKIH 237

Query: 239 DLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGI 298
           DLSGSAVAAAFITTPFVPSTGCDWVA+SNPGAWL+VRPD  R  SWQPWGKLEAWRERGI
Sbjct: 238 DLSGSAVAAAFITTPFVPSTGCDWVAKSNPGAWLVVRPDPSRPNSWQPWGKLEAWRERGI 297

Query: 299 RDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRT-ATSPIPSPQSSGDF 357
           RDSVCCRFHLLS G E G+VLMSEILISAEKGGEF IDTDKQ+ T A +PIPSPQSSGDF
Sbjct: 298 RDSVCCRFHLLSNGLEVGDVLMSEILISAEKGGEFLIDTDKQMLTVAATPIPSPQSSGDF 357

Query: 358 SGLGPVI--GGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACR 415
           SGLG  +  GGFVM  RVQGEGK SKP+VQLAMRHVTCVEDAAIFMALAAAVDLSI AC+
Sbjct: 358 SGLGQCVSGGGFVMSSRVQGEGKSSKPVVQLAMRHVTCVEDAAIFMALAAAVDLSILACK 417

Query: 416 P 416
           P
Sbjct: 418 P 418

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811913|ref|XP_002873840.1| hypothetical protein ARALYDRAFT_909762 [Arabidopsis lyrata subsp. lyrata] gi|297319677|gb|EFH50099.1| hypothetical protein ARALYDRAFT_909762 [Arabidopsis lyrata subsp. lyrata]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/421 (78%), Positives = 359/421 (85%), Gaps = 8/421 (1%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHA--FSSPCLCEIRLRGFPVQTTQVPLVSS 58
           MDPQAFIRLS+GSL LRIP   LNS         FSS C CEI+LRGFPVQTT +PL+ S
Sbjct: 1   MDPQAFIRLSVGSLALRIPKILLNSTSKSDEKKNFSSQCSCEIKLRGFPVQTTSIPLMPS 60

Query: 59  PEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIG 118
            +A PD HSI++SFYLEESDL+ LLTPGCFYSPHA+LE+ VF+G+K  +CGVG KR QIG
Sbjct: 61  LDAAPDHHSISTSFYLEESDLRTLLTPGCFYSPHAHLEISVFSGKKSLNCGVGAKRQQIG 120

Query: 119 TFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTM 178
            FKLEVGPEWG GKP+ILFNGWI IGKNK++     AELHLKVKLDPDPRYVFQFED+T 
Sbjct: 121 IFKLEVGPEWGAGKPMILFNGWISIGKNKRDGA---AELHLKVKLDPDPRYVFQFEDITT 177

Query: 179 LSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIH 238
           LSPQIVQL+GS+KQPIFSCKFSRDR  QVD L+ YWS S D   LE+ERRERKGWKVKIH
Sbjct: 178 LSPQIVQLRGSVKQPIFSCKFSRDRVSQVDPLNGYWSSSGDGTELESERRERKGWKVKIH 237

Query: 239 DLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGI 298
           DLSGSAVAAAFITTPFVPS+GCDWVA+SNPGAWL+VRPD  R  SWQPWGKLEAWRERGI
Sbjct: 238 DLSGSAVAAAFITTPFVPSSGCDWVAKSNPGAWLVVRPDPSRPNSWQPWGKLEAWRERGI 297

Query: 299 RDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRT-ATSPIPSPQSSGDF 357
           RDSVCCRFHLLS G E G+VLMSEILISAEKGGEFFIDTDKQ+ T A +PIPSPQSSGDF
Sbjct: 298 RDSVCCRFHLLSNGLEIGDVLMSEILISAEKGGEFFIDTDKQMLTVAATPIPSPQSSGDF 357

Query: 358 SGLGPVI--GGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACR 415
           SGLG  +  GGFVM  RVQGEGK SKP+VQLAMRHVTCVEDAAIFMALAAAVDLSI AC+
Sbjct: 358 SGLGQCVSGGGFVMSSRVQGEGKSSKPVVQLAMRHVTCVEDAAIFMALAAAVDLSILACK 417

Query: 416 P 416
           P
Sbjct: 418 P 418

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
TAIR|locus:2151391	432	ASG1 "AT5G17640" [Arabidopsis	0.965	0.958	0.789	2.5e-177
TAIR|locus:2201881	461	AT1G10020 "AT1G10020" [Arabido	0.825	0.767	0.413	9e-90
TAIR|locus:2091186	491	AT3G19680 [Arabidopsis thalian	0.599	0.523	0.414	4.3e-76
TAIR|locus:2118259	424	AT4G29310 "AT4G29310" [Arabido	0.920	0.931	0.421	5e-76
TAIR|locus:2031075	460	AT1G50040 "AT1G50040" [Arabido	0.934	0.871	0.385	1.7e-66

TAIR|locus:2151391 ASG1 "AT5G17640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1722 (611.2 bits), Expect = 2.5e-177, P = 2.5e-177
 Identities = 333/422 (78%), Positives = 361/422 (85%)

Query:     1 MDPQAFIRLSIGSLGLRIPGSALNSAESGIHA--FSSPCLCEIRLRGFPVQTTQVPLVSS 58
             MDPQAFIRLS+GSL LRIP   +NS         FSS C CEI+LRGFPVQTT +PL+ S
Sbjct:     1 MDPQAFIRLSVGSLALRIPKVLINSTSKSNEKKNFSSQCSCEIKLRGFPVQTTSIPLMPS 60

Query:    59 PEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIG 118
              +A PD HSI++SFYLEESDL+ALLTPGCFYSPHA+LE+ VFTG+K  +CGVG KR QIG
Sbjct:    61 LDAAPDHHSISTSFYLEESDLRALLTPGCFYSPHAHLEISVFTGKKSLNCGVGGKRQQIG 120

Query:   119 TFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTM 178
              FKLEVGPEWGEGKP+ILFNGWI IGK K++ G   AELHLKVKLDPDPRYVFQFEDVT 
Sbjct:   121 MFKLEVGPEWGEGKPMILFNGWISIGKTKRD-G--AAELHLKVKLDPDPRYVFQFEDVTT 177

Query:   179 LSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGSVDCNALETERRERKGWKVKIH 238
             LSPQIVQL+GS+KQPIFSCKFSRDR  QVD L+ YWS S D   LE+ERRERKGWKVKIH
Sbjct:   178 LSPQIVQLRGSVKQPIFSCKFSRDRVSQVDPLNGYWSSSGDGTELESERRERKGWKVKIH 237

Query:   239 DLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGI 298
             DLSGSAVAAAFITTPFVPSTGCDWVA+SNPGAWL+VRPD  R  SWQPWGKLEAWRERGI
Sbjct:   238 DLSGSAVAAAFITTPFVPSTGCDWVAKSNPGAWLVVRPDPSRPNSWQPWGKLEAWRERGI 297

Query:   299 RDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRT-ATSPIPSPQSSGDF 357
             RDSVCCRFHLLS G E G+VLMSEILISAEKGGEF IDTDKQ+ T A +PIPSPQSSGDF
Sbjct:   298 RDSVCCRFHLLSNGLEVGDVLMSEILISAEKGGEFLIDTDKQMLTVAATPIPSPQSSGDF 357

Query:   358 SGLGPVI--GGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACR 415
             SGLG  +  GGFVM  RVQGEGK SKP+VQLAMRHVTCVEDAAIFMALAAAVDLSI AC+
Sbjct:   358 SGLGQCVSGGGFVMSSRVQGEGKSSKPVVQLAMRHVTCVEDAAIFMALAAAVDLSILACK 417

Query:   416 PF 417
             PF
Sbjct:   418 PF 419

GO:0003674 "molecular_function" evidence=ND

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2201881 AT1G10020 "AT1G10020" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 9.0e-90, Sum P(2) = 9.0e-90
 Identities = 155/375 (41%), Positives = 226/375 (60%)

Query:     1 MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVS-SP 59
             MDP  FIRL+IG+L L++P +A  +  S +H  SSPC C+I+L+ FP QT  +P +    
Sbjct:     1 MDPCPFIRLTIGNLALKVPLAA-KTTSSVVHPSSSPCFCKIKLKNFPPQTAAIPYIPLET 59

Query:    60 EALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGT 119
                P+I ++A++F+L  SD++ L +   F S    L+++++TGR G  CGV   R  +  
Sbjct:    60 TQFPEIQTLAATFHLSSSDIQRLASRSIFTSKPC-LKILIYTGRAGAACGVHSGR-LLAK 117

Query:   120 FKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTML 179
               + +     + KP +  NGWI +GK   ++    A+ HL VK +PDPR+VFQF+     
Sbjct:   118 VSVPLDLSGTQSKPCVFHNGWISVGKGAGKSSS-SAQFHLNVKAEPDPRFVFQFDGEPEC 176

Query:   180 SPQIVQLQGSIKQPIFSCKFS-RDRGPQVDLLSSY-WSGSVD---CNALETER----RER 230
             SPQ+VQ+QG+I+QP+F+CKFS R  G +     S     SV     N+  +ER    +ER
Sbjct:   177 SPQVVQIQGNIRQPVFTCKFSCRHTGDRTQRSRSLPTETSVSRSWLNSFGSERERPGKER 236

Query:   231 KGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKL 290
             KGW + +HDLSGS VA A I TPFV S G D V+RSNPG+WLI+RP  C   +W+PWG+L
Sbjct:   237 KGWSITVHDLSGSPVAMASIVTPFVASPGTDRVSRSNPGSWLILRPGDC---TWRPWGRL 293

Query:   291 EAWRERG-IRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFID--TDKQLRTATSP 347
             EAWRERG   D +  RF L+ +G     ++++E  IS+ +GG+F I+  +     + TS 
Sbjct:   294 EAWRERGGATDGLGYRFELIPDGSSGAGIVLAESTISSHRGGKFSIELGSSPSSSSPTSV 353

Query:   348 IPSPQSS-GDFSGLG 361
             +   +S  G  SG G
Sbjct:   354 VNRSRSRRGGSSGSG 368

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2091186 AT3G19680 [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 4.3e-76, Sum P(3) = 4.3e-76
 Identities = 116/280 (41%), Positives = 164/280 (58%)

Query:   102 GRKGFHCGVGIKRHQI-GTFKLEVGPEWGEGKPIILFNGWIGIG--KNKQETGKPGAELH 158
             G  G  CG+     ++ G F++ +  +  E K  +  NGW+ +   K K +TG    ELH
Sbjct:   120 GVSGASCGLATAGEKLLGRFEVSLDLKSAETKSFLAHNGWVALPSKKTKSKTGSD-PELH 178

Query:   159 LKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKF-SRDR--GPQVDLLSSYWS 215
             + V+++PDPR+VFQF+     SPQ+ Q+QG+ KQ +F+CKF SR+   G +  L SS   
Sbjct:   179 VSVRVEPDPRFVFQFDGEPECSPQVFQVQGNTKQAVFTCKFGSRNSNSGDRNLLHSSSMM 238

Query:   216 GSVD----C-NALETER----RERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARS 266
               +     C +++ +E+    +ERKGW + +HDLSGS VA A + TPFVPS G + V RS
Sbjct:   239 SEISSTRSCISSMNSEKEQPSKERKGWSITVHDLSGSPVAMASMVTPFVPSPGSNRVTRS 298

Query:   267 NPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILIS 326
             +PGAWLI+RPD C   +W+PWG+LEAWRE G  D++  RF L  +G      + +   IS
Sbjct:   299 SPGAWLILRPDGC---TWKPWGRLEAWREAGYSDTLGYRFELFQDG--IATAVSASSSIS 353

Query:   327 AEKGGEFFID-TDKQLRTATSPIPSPQSSGDFSGLGPVIG 365
              + GG F ID T     TA++P  SPQ S D  G G   G
Sbjct:   354 LKNGGSFVIDVTGGTSTTASTPTTSPQGSWDL-GSGSSAG 392

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2118259 AT4G29310 "AT4G29310" [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 181/429 (42%), Positives = 253/429 (58%)

Query:     1 MDPQAFIRLSIGSLGLRIPGSALNSAESG-IHAFSSPCLCEIRLRGFPVQTTQVPLVSSP 59
             MDP  F+RL+I SL LR+P +A N    G +H  S+PC C++R++ FP Q   +PL S  
Sbjct:     1 MDPCPFVRLTIDSLALRLPETATNKQIGGEVHPSSTPCYCKLRIKHFPSQKALLPLSSFS 60

Query:    60 EAL--PDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQI 117
             +A   P+  + A  F+L+   ++ +   G   S    L V V+ GR G  CGV   +  +
Sbjct:    61 DASSPPESSTSAPGFHLDADAIRRI--SGKKIS----LRVSVYAGRTGHTCGVASGK-LL 113

Query:   118 GTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVT 177
             G  ++ V       + +   NGW  +G +     KP A LHL V  +PDPR+VFQF    
Sbjct:   114 GKVEVAVDLAAALSRTVAFHNGWKKLGGDGD---KPSARLHLLVCAEPDPRFVFQFGGEP 170

Query:   178 MLSPQIVQLQGSIKQPIFSCKFSRDR-GPQVDLLSSY------W-SGSVDCNALETER-R 228
               SP + Q+Q ++KQP+FSCKFS DR G    L S +      W + ++  +  E ++ R
Sbjct:   171 ECSPVVYQIQDNLKQPVFSCKFSSDRNGRSRSLPSGFTYSSRGWITRTLSGDQWEKKQAR 230

Query:   229 ERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWG 288
             ERKGW + IHDLSGS VAAA + TPFV S G D V+RSNPGAWLI+RP      SW+PWG
Sbjct:   231 ERKGWMITIHDLSGSPVAAASMITPFVASPGSDRVSRSNPGAWLILRPHGTCVSSWKPWG 290

Query:   289 KLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSPI 348
             +LEAWRERG  D +  +F L+ +   +  + ++E  +S ++GG+F ID     R  +   
Sbjct:   291 RLEAWRERGAIDGLGYKFELVRDNSTSTGIPIAEGTMSTKQGGKFSID-----RRVSGQG 345

Query:   349 PSPQSSGDFSGLGPVIGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVD 408
              SP  S       PV  GFVM   V+GEGK SKP+V +  +HVTC+ DAA+F+AL+AAVD
Sbjct:   346 ESPAISS------PV-KGFVMGSSVEGEGKVSKPVVHVGAQHVTCMADAALFVALSAAVD 398

Query:   409 LSIEACRPF 417
             LS++AC+ F
Sbjct:   399 LSVDACQLF 407

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

TAIR|locus:2031075 AT1G50040 "AT1G50040" [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 177/459 (38%), Positives = 254/459 (55%)

Query:     1 MDPQAFIRLSIGSLGLRIP----GSALNSAESG--IHAFSSP-CLCEIRLRGFPVQTTQV 53
             MDP +F+R+ +G+L +R P     S+ +S+ SG  +   SS  C C+I+ + FP Q   V
Sbjct:     1 MDPCSFVRIIVGNLAVRFPRSPSSSSSSSSSSGPSVSDVSSGNCYCKIKFKSFPRQIVSV 60

Query:    54 PLVSSPEALPD-------IHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGF 106
             P++   E+  +       + ++A+ F L +S ++  L    +    + L V V++ R+  
Sbjct:    61 PVLLRTESESESRCCSGNVSTVAACFSLSKSQIETSLKKAKW----SVLSVEVYS-RRSA 115

Query:   107 HCG-VGIKRHQ-IGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGA--ELHLKVK 162
              CG V     + IG F++ +  +  E K  +  NGW+ +G   +   K G+  ELH+ V+
Sbjct:   116 SCGFVAASGEKLIGRFQVTLDLKAAESKTCLAHNGWVDLGTKSKNNKKSGSDPELHVSVR 175

Query:   163 LDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFS-RDRGPQ-VDL-LSSYWSGSVD 219
             ++PD R+VFQF+     SPQ+ Q+QG+ KQ +F+CKF  R+ G + + L LSS  SG   
Sbjct:   176 VEPDTRFVFQFDGEPECSPQVFQVQGNAKQAVFTCKFGFRNSGDRNLSLSLSSVTSGK-- 233

Query:   220 CNALETERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDAC 279
                 E   +ERKGW + IHDLSGS VA A + TPFVPS G + V+RS+PGAWLI+RPD  
Sbjct:   234 ----EQFSKERKGWSITIHDLSGSPVAMASMVTPFVPSPGSNRVSRSSPGAWLILRPDGY 289

Query:   280 RAESWQPWGKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDK 339
                +W+PW +L+AWRE G+ D +  RF L  +G        S I  S + GG F ID   
Sbjct:   290 ---TWKPWVRLQAWREPGVSDVLGYRFELYKDGIAVAVSASSSI--STKLGGSFIIDGST 344

Query:   340 QLRTATSPIPSP-----------QSSGDFSGLGPVIG----------GFVMCCRVQGEGK 378
                T  S   S            +SS   SG G              GFVM  RVQG  K
Sbjct:   345 STTTTASWSSSEGSFDLSSWSSIRSSRTDSGSGSDFRFSLSQAQQNLGFVMSTRVQGVEK 404

Query:   379 RSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPF 417
             +SKP V++ ++HVTC EDAA  +ALAAAVDLS++ACR F
Sbjct:   405 QSKPKVEVGVKHVTCTEDAAAHVALAAAVDLSMDACRLF 443


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      429       417   0.00082  118 3  11 22  0.38    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  278 KB (2144 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.41u 0.45s 30.86t   Elapsed:  00:00:03
  Total cpu time:  30.41u 0.45s 30.86t   Elapsed:  00:00:03
  Start:  Fri May 10 05:38:54 2013   End:  Fri May 10 05:38:57 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022959001 SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (430 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	429
pfam06219	420	pfam06219, DUF1005, Protein of unknown function (D	0.0

>gnl|CDD|218943 pfam06219, DUF1005, Protein of unknown function (DUF1005)

 Score =  589 bits (1521), Expect = 0.0
 Identities = 234/461 (50%), Positives = 290/461 (62%), Gaps = 75/461 (16%)

Query: 1   MDPQAFIRLSIGSLGLRIPGSALNSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPE 60
           MDP  F+RLS+G+L                                       PL+SS E
Sbjct: 1   MDPCPFVRLSVGNL---------------------------------------PLISSSE 21

Query: 61  A-LPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRHQIGT 119
           A  PD  ++A+SF+L +SDL+ALL  GCFY+PHA LEV V+TGR+G  CGVG     +G 
Sbjct: 22  AESPDSSTLAASFHLSKSDLEALLAKGCFYAPHACLEVSVYTGRRGATCGVGGSGRLLGK 81

Query: 120 FKLEVGPEWGEGKPIILFNGWIGIGKNKQETGK-PGAELHLKVKLDPDPRYVFQFEDVTM 178
            K+ +  +W E KP++L NGWIGIGK K ++GK   AELHL+VK +PDPR+VFQF+    
Sbjct: 82  VKVPLDLKWAESKPVVLHNGWIGIGKKKGDSGKSSAAELHLRVKAEPDPRFVFQFDGEPE 141

Query: 179 LSPQIVQLQGSIKQPIFSCKFSRDRGPQVDLLSSYWSGS-----------VDCNALETER 227
            SPQ+VQ+QG+IKQP+F+CKFS  R   VD L S    +            D + LE E 
Sbjct: 142 CSPQVVQVQGNIKQPVFTCKFSCRRNGSVDDLRSRSLPTEFTYSRYWSLSSDGSELEREG 201

Query: 228 RERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPW 287
           +ERKGW V IHDLSGS VAAA + TPFV S GCD V+RSNPGAWLI+RPD  R  SW+PW
Sbjct: 202 KERKGWSVTIHDLSGSPVAAASMVTPFVASPGCDRVSRSNPGAWLILRPDGDR--SWKPW 259

Query: 288 GKLEAWRERGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSP 347
           G+LEAWRERG  D++  RF LL +G     VL++E  ISA+KGGEF ID D+Q  TAT+P
Sbjct: 260 GRLEAWRERGASDTLGYRFELLPDGSIGAGVLVAESTISAKKGGEFAIDLDRQSTTATTP 319

Query: 348 IPSPQSSGDFSGLGPVIG---------------------GFVMCCRVQGEGKRSKPMVQL 386
            PSPQSSGDF+ L                          GFVM  RVQGEGK SKP+V++
Sbjct: 320 APSPQSSGDFASLSSAGSGGASRSPSGGSGDFGLWPAYQGFVMSSRVQGEGKCSKPLVEV 379

Query: 387 AMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRKLRRRSHH 427
            +RHVTC+EDAA F+ALAAAVDLS++ACR F RKLR+   H
Sbjct: 380 GVRHVTCMEDAAAFVALAAAVDLSMDACRLFSRKLRKELRH 420

Family of plant proteins with undetermined function. Length = 420

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	429
PF06219	460	DUF1005: Protein of unknown function (DUF1005); In	100.0
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	93.28
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	92.08
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	88.89
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	88.51
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	87.19
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	86.92
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	86.32
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	83.99
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	83.3
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	82.14
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	81.55
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	81.14
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	80.5

>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function

Probab=100.00  E-value=3.8e-212  Score=1569.40  Aligned_cols=423  Identities=61%  Similarity=1.058  Sum_probs=389.9

Q ss_pred             CCCcceeeeeeccccccccCCCC-CCCCcccccCCCceeEEEecCCCCcceeeeccccCCCCC-CCCCCcceeeecCHHH
Q 014188            1 MDPQAFIRLSIGSLGLRIPGSAL-NSAESGIHAFSSPCLCEIRLRGFPVQTTQVPLVSSPEAL-PDIHSIASSFYLEESD   78 (429)
Q Consensus         1 MDPc~FVRl~Vg~LaLr~P~~~~-~s~~~gVhpssspC~C~IrL~~fP~qta~vPL~~~~~~~-p~~~~~Aa~F~Ld~s~   78 (429)
                      |||||||||+|||||||||..++ +++.++|||+++||||||||+|||+|||+|||+++++.. ||++++||+|||||+|
T Consensus         1 MDPcpFVRl~Vg~LaLk~P~~~~~~~a~sgvhpssspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~   80 (460)
T PF06219_consen    1 MDPCPFVRLSVGNLALKIPSSSASKSAGSGVHPSSSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSD   80 (460)
T ss_pred             CCCCceEEEEecceeecCCCCcCCCCCcCccccCCCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHH
Confidence            99999999999999999996544 455567999999999999999999999999999988866 5899999999999999


Q ss_pred             HHHhhCCCCCCCCCceEEEEEEecCCCccccc-CCcceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCC-CCCcE
Q 014188           79 LKALLTPGCFYSPHAYLEVVVFTGRKGFHCGV-GIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETG-KPGAE  156 (429)
Q Consensus        79 l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv-~~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~-k~~ae  156 (429)
                      |++|++|+||+.+.++|||+||+||+|++||| +++| |||+|+|+|||+|+|+||++||||||+|||++++++ +++||
T Consensus        81 l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~~~~k-lLG~v~vpldl~~ae~kp~v~hnGWi~iGk~~~~~~~~~~ae  159 (460)
T PF06219_consen   81 LRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVGNSGK-LLGKVRVPLDLKWAEGKPVVFHNGWISIGKNKQGSGKSPSAE  159 (460)
T ss_pred             HHHHhCCCccccCCceEEEEEEECCCCCcccccccce-EEEEEEEEeccccccCCeeEEEccceecCCCCCCCCCCCcce
Confidence            99999999999989999999999999999999 5566 999999999999999999999999999999866554 47999


Q ss_pred             EEEEEeecCCCceEEEeCCccccCceEEEeecCcccceeEEEeecCCCC-----Cccccc------ccccCCcccccccc
Q 014188          157 LHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQGSIKQPIFSCKFSRDRGP-----QVDLLS------SYWSGSVDCNALET  225 (429)
Q Consensus       157 lHl~Vr~EpDPRyVFQFdgepecsPqV~QvqG~~rQPvFsCKFsrdr~~-----r~~~l~------~~w~~s~~~~e~e~  225 (429)
                      |||+||+|||||||||||||||||||||||||+|||||||||||+|++.     |+++++      ++|+.+..++|+|+
T Consensus       160 LHl~Vr~EpDPRfVFQFdgepecSPQV~QiqG~~rQPvFsCKFs~~~~~~~~~~~sr~~~~~~~~sr~W~~s~~~se~e~  239 (460)
T PF06219_consen  160 LHLVVRAEPDPRFVFQFDGEPECSPQVFQIQGNIRQPVFSCKFSRDRNSQRDPLRSRSLSSDPSSSRSWSSSSFGSERER  239 (460)
T ss_pred             EEEEEeccCCCeeEEEcCCccccCcEEEEecCccccceeEEEEEecccCCcccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999988777     444443      89944433999999


Q ss_pred             ccccccCeEEEEecCCCChhhhhhhccccccCCCCCcccccCCceEEEEeeCCCCCCCcccccchhhhhccCCCCceeeE
Q 014188          226 ERRERKGWKVKIHDLSGSAVAAAFITTPFVPSTGCDWVARSNPGAWLIVRPDACRAESWQPWGKLEAWRERGIRDSVCCR  305 (429)
Q Consensus       226 ~~kERKGW~VtIHDLSGSpVAaAsMvTPFVPSpGsdrVsRSNPGAWLIlRP~~~~~~sWkPWGRLEAWRErG~~d~lgyR  305 (429)
                      ++||||||+|||||||||||||||||||||||||||||||||||||||||||++  +|||||||||||||||++|+||||
T Consensus       240 ~~rERKGW~VtIHDLSGSPVAaASMvTPFVPSpGSDrVSRSNPGAWLILRP~~~--gsWkPWGRLEAWRErg~~d~lgyr  317 (460)
T PF06219_consen  240 PRRERKGWSVTIHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGAWLILRPDGD--GSWKPWGRLEAWRERGGSDGLGYR  317 (460)
T ss_pred             ccccccCcEEEEEcCCCCHHHHhhhcCCccCCCCCCceeccCCCeEEEEecCCC--CCcccchhhhhhhccCCCCcceeE
Confidence            999999999999999999999999999999999999999999999999999887  699999999999999999999999


Q ss_pred             EEEeecCCccceeEeeeeeeecccCceeEEecCcccccCCCCCCCCC----------------------CCCCCCCCCCc
Q 014188          306 FHLLSEGQEAGEVLMSEILISAEKGGEFFIDTDKQLRTATSPIPSPQ----------------------SSGDFSGLGPV  363 (429)
Q Consensus       306 feLl~d~~~~~~v~~aes~is~~kGG~F~ID~~~~~~~~~sp~~sp~----------------------~sgd~~~~~p~  363 (429)
                      ||||+|++.+++|+|||++||++|||||+||++++...+++|.+||+                      +++|| ++||.
T Consensus       318 feL~~~~~~~~~v~~aes~is~~kGG~F~ID~~~~~~~~~tp~~sp~~s~d~~s~~~~~~~~~~~~~~~~~~df-~~~~~  396 (460)
T PF06219_consen  318 FELLPDGGVGGGVLVAESTISSKKGGEFSIDTDRQSTSATTPAPSPRSSGDFSSLSGSGSGGSPRCSPGSSGDF-GLWPG  396 (460)
T ss_pred             EEEccCCCCCceEEEeeeeeccccCceeEEecCcccccccCCCCCCCCCccccccCCccCCCCCCCCCCCcccc-ccccC
Confidence            99999998899999999999999999999999876333444554444                      44455 45777


Q ss_pred             ccceeEeeEEeccCccCCceEEEeeeeecchhhHHHHHHHHhhhcccccccccchhhHhhhhcc
Q 014188          364 IGGFVMCCRVQGEGKRSKPMVQLAMRHVTCVEDAAIFMALAAAVDLSIEACRPFRRKLRRRSHH  427 (429)
Q Consensus       364 ~~GFVMs~~V~GEgk~SkP~Vqvgv~HVtC~EDAA~FvALAAAVDLSmdACrlFs~kLRkEL~~  427 (429)
                      .+||||||+||||||||||+|||||||||||||||+||||||||||||||||||+|||||||||
T Consensus       397 ~~gfvms~~v~ge~~~skp~v~~~~~hv~c~edaa~f~alaaavdls~dac~~f~~klrkel~~  460 (460)
T PF06219_consen  397 YGGFVMSCRVEGEGKCSKPTVQVGVRHVTCMEDAAAFVALAAAVDLSMDACRPFSRKLRKELCH  460 (460)
T ss_pred             CCceeEeeecccCCccCCceEEEeeeeeehHHHHHHHHHHHHHhhhhHhhhhhhHHHHHHHhcC
Confidence            7899999999999999999999999999999999999999999999999999999999999997

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=93.28  E-value=2  Score=36.45  Aligned_cols=104  Identities=15%  Similarity=0.294  Sum_probs=62.4

Q ss_pred             CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188           35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR  114 (429)
Q Consensus        35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r  114 (429)
                      +-.||+|.|++...+++.+  ..  ...|.=   =-.|+++.      . .    +....|.|.||...+.     +...
T Consensus        22 ~DPYv~v~l~~~~~~kT~v--~~--~~nP~W---nE~f~f~~------~-~----~~~~~l~v~v~d~~~~-----~~d~   78 (126)
T cd08400          22 PHPYCVISLNEVKVARTKV--RE--GPNPVW---SEEFVFDD------L-P----PDVNSFTISLSNKAKR-----SKDS   78 (126)
T ss_pred             CCeeEEEEECCEeEEEeec--CC--CCCCcc---CCEEEEec------C-C----CCcCEEEEEEEECCCC-----CCCC
Confidence            3459999999877544443  22  234441   12455531      1 1    1123688899997653     1223


Q ss_pred             eeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecCC
Q 014188          115 HQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPD  166 (429)
Q Consensus       115 ~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpD  166 (429)
                       .||+++++|.- -..+..   ...|..+-..+.++.+..-+|||.++..+|
T Consensus        79 -~iG~v~i~l~~-l~~~~~---~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          79 -EIAEVTVQLSK-LQNGQE---TDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             -eEEEEEEEHhH-ccCCCc---ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence             89999999872 222321   478999965432234456799999987665

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=92.08  E-value=5.9  Score=36.19  Aligned_cols=122  Identities=11%  Similarity=0.173  Sum_probs=74.9

Q ss_pred             CceeEEEec--CCCCcceeeeccccCCCCCCCCCCcceeeecCHHH--HHHhhCCCCCCCCCceEEEEEEecCCCccccc
Q 014188           35 SPCLCEIRL--RGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESD--LKALLTPGCFYSPHAYLEVVVFTGRKGFHCGV  110 (429)
Q Consensus        35 spC~C~IrL--~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~--l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv  110 (429)
                      +=.|.|+.|  ++--.|+.--+.+ .....|.- +-...|.++..+  +.|.+..       ..|++.||.-+.     +
T Consensus        25 ~DpYVk~~l~~p~~~~~k~KT~v~-k~TlnPvf-NE~f~f~I~~~~~~~~R~l~~-------~~L~~~V~d~~~-----f   90 (155)
T cd08690          25 LDTYVKFEFPYPNEEPQSGKTSTI-KDTNSPEY-NESFKLNINRKHRSFQRVFKR-------HGLKFEVYHKGG-----F   90 (155)
T ss_pred             CCeEEEEEEecCCCCCceeecCcc-cCCCCCcc-cceEEEEeccccchhhhhccC-------CcEEEEEEeCCC-----c
Confidence            346999976  3233455555555 23334442 234457775442  5554444       479999998432     2


Q ss_pred             CCcceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecCCCceEEEeCCccccCceEEEeec
Q 014188          111 GIKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDPRYVFQFEDVTMLSPQIVQLQG  188 (429)
Q Consensus       111 ~~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpDPRyVFQFdgepecsPqV~QvqG  188 (429)
                      .....+||++.|+|+.--..   +..|+ |+.+=.+.   ++-|..||+.||+-           ||..+-||.|++-
T Consensus        91 ~~~D~~iG~~~i~L~~l~~~---~~~~~-~~~L~~~~---k~~Gg~l~v~ir~r-----------~p~~~~~~~~~~~  150 (155)
T cd08690          91 LRSDKLLGTAQVKLEPLETK---CEIHE-SVDLMDGR---KATGGKLEVKVRLR-----------EPLTGKQLEEITE  150 (155)
T ss_pred             ccCCCeeEEEEEEccccccc---CcceE-EEEhhhCC---CCcCCEEEEEEEec-----------CCCccceeeeeee
Confidence            11234899999999742222   24565 99873322   13578999999984           7888889888864

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=88.89  E-value=4.7  Score=34.16  Aligned_cols=102  Identities=23%  Similarity=0.305  Sum_probs=60.6

Q ss_pred             CCceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188           34 SSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK  113 (429)
Q Consensus        34 sspC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~  113 (429)
                      ++..||+|+|.+...+|..   + .....|.   -=-.|.++..++           ....|++.||.=.+.       +
T Consensus        16 ~~Dpyv~v~l~~~~~kT~v---~-~~t~nP~---Wne~F~f~~~~~-----------~~~~L~~~v~d~d~~-------~   70 (121)
T cd08378          16 SNDPVVEVKLGNYKGSTKA---I-ERTSNPE---WNQVFAFSKDRL-----------QGSTLEVSVWDKDKA-------K   70 (121)
T ss_pred             cCCCEEEEEECCccccccc---c-CCCCCCc---cceEEEEEcCCC-----------cCCEEEEEEEeCCCC-------c
Confidence            3467999999986555543   2 2223343   112355542211           235899999985432       3


Q ss_pred             ceeEEEEEEeecCCCCCCc-ceEEeeceeecCCCCcCCCCCCcEEEEEEe
Q 014188          114 RHQIGTFKLEVGPEWGEGK-PIILFNGWIGIGKNKQETGKPGAELHLKVK  162 (429)
Q Consensus       114 r~llG~~~v~ldl~~ae~k-p~v~h~GWi~iGk~~~~~~k~~aelHl~Vr  162 (429)
                      ..+||+++++|+---.... .-..++.|..+-..+  +.+..-||||.+.
T Consensus        71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~--~~~~~G~i~l~~~  118 (121)
T cd08378          71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK--GGRVGGELMLAVW  118 (121)
T ss_pred             CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC--CCccceEEEEEEE
Confidence            3489999999973211111 122378999996532  2456679999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=88.51  E-value=4.6  Score=33.87  Aligned_cols=104  Identities=18%  Similarity=0.215  Sum_probs=60.6

Q ss_pred             ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188           36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH  115 (429)
Q Consensus        36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~  115 (429)
                      -+||++.+.+-..+|..+    .....|.= +-.-.|++.+..  .+-        ...|+|.||.-.+     +..+..
T Consensus        22 dpyv~v~~~~~~~rT~v~----~~t~nP~W-ne~f~f~~~~~~--~~~--------~~~l~~~V~d~~~-----~~~~d~   81 (127)
T cd04022          22 SAYVELDFDGQKKRTRTK----PKDLNPVW-NEKLVFNVSDPS--RLS--------NLVLEVYVYNDRR-----SGRRRS   81 (127)
T ss_pred             CcEEEEEECCEEecceeE----cCCCCCcc-ceEEEEEccCHH--Hcc--------CCeEEEEEeeCCC-----CcCCCC
Confidence            458999999866555543    12233431 223456654322  111        2479999998332     111233


Q ss_pred             eEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEee
Q 014188          116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKL  163 (429)
Q Consensus       116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~  163 (429)
                      +||+++|+++---.++.   .+..|..+.+. ...++.+.||||.+-+
T Consensus        82 ~lG~v~i~l~~l~~~~~---~~~~w~~L~~~-~~~~~~~G~l~l~~~~  125 (127)
T cd04022          82 FLGRVRISGTSFVPPSE---AVVQRYPLEKR-GLFSRVRGEIGLKVYI  125 (127)
T ss_pred             eeeEEEEcHHHcCCCCC---ccceEeEeeeC-CCCCCccEEEEEEEEE
Confidence            89999999962112232   35789999753 2234567799998754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=87.19  E-value=5  Score=33.58  Aligned_cols=105  Identities=15%  Similarity=0.220  Sum_probs=60.1

Q ss_pred             CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188           35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR  114 (429)
Q Consensus        35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r  114 (429)
                      +-+||+|+|++--.+|..+-    ....|.= +-.-.|++.....+.        .....|.|.||.-.+     ++...
T Consensus        20 ~dpYv~v~l~~~~~kT~v~~----~t~nP~W-ne~f~F~v~~~~~~~--------~~~~~l~~~v~d~~~-----~~~d~   81 (126)
T cd08682          20 NDAYVIIQLGKEKYSTSVKE----KTTSPVW-KEECSFELPGLLSGN--------GNRATLQLTVMHRNL-----LGLDK   81 (126)
T ss_pred             CCceEEEEECCeeeeeeeec----CCCCCEe-CceEEEEecCcccCC--------CcCCEEEEEEEEccc-----cCCCc
Confidence            45699999987555554331    1133331 113356665421111        123589999998542     12234


Q ss_pred             eeEEEEEEeecC-CCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEE
Q 014188          115 HQIGTFKLEVGP-EWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKV  161 (429)
Q Consensus       115 ~llG~~~v~ldl-~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~V  161 (429)
                       +||++.|+|+- ....+.+   ...|..+-....+..+...||||.+
T Consensus        82 -~iG~~~i~l~~l~~~~~~~---~~~W~~L~~~~~~~~~~~Gei~l~~  125 (126)
T cd08682          82 -FLGQVSIPLNDLDEDKGRR---RTRWFKLESKPGKDDKERGEIEVDI  125 (126)
T ss_pred             -eeEEEEEEHHHhhccCCCc---ccEEEECcCCCCCCccccceEEEEe
Confidence             89999999963 2122332   4689999532223445678999976

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=86.92  E-value=12  Score=31.50  Aligned_cols=106  Identities=13%  Similarity=0.063  Sum_probs=60.2

Q ss_pred             CCceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188           34 SSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK  113 (429)
Q Consensus        34 sspC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~  113 (429)
                      ++-+||+|.+++ +.|+..-..+.. ...|.= +-...|.+.+              ....|.|.||.-...     +..
T Consensus        17 ~~dpyv~v~~~~-~~~~~kT~v~~~-t~nP~W-ne~f~f~~~~--------------~~~~l~~~v~d~~~~-----~~~   74 (126)
T cd08678          17 SSNPYCVLEMDE-PPQKYQSSTQKN-TSNPFW-DEHFLFELSP--------------NSKELLFEVYDNGKK-----SDS   74 (126)
T ss_pred             CcCCEEEEEECC-CCcEEEeEEEec-CCCCcc-CceEEEEeCC--------------CCCEEEEEEEECCCC-----CCC
Confidence            345699999974 222222223322 234431 1122454431              124799999985542     123


Q ss_pred             ceeEEEEEEeecC-CCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecCCC
Q 014188          114 RHQIGTFKLEVGP-EWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPDP  167 (429)
Q Consensus       114 r~llG~~~v~ldl-~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpDP  167 (429)
                      + +||+++++|+- .....     ...|..+-....++.+...+||+.++.-++.
T Consensus        75 ~-~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          75 K-FLGLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             c-eEEEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            4 89999999973 32222     1468888543323445788999999876665

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=86.32  E-value=9.1  Score=34.69  Aligned_cols=102  Identities=17%  Similarity=0.202  Sum_probs=59.7

Q ss_pred             ceeEEEecCCCCc-ceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEec--CCCcccccCC
Q 014188           36 PCLCEIRLRGFPV-QTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTG--RKGFHCGVGI  112 (429)
Q Consensus        36 pC~C~IrL~~fP~-qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~G--r~G~~CGv~~  112 (429)
                      ..||+|.|.+-=+ +|..+.   . +..|.   --=.|+++       .+     +....|.|.||.-  ..+.    ..
T Consensus        28 ~~Y~~i~Ld~~~vaRT~v~~---~-~~nP~---W~E~F~f~-------~~-----~~~~~l~v~v~k~~~~~~~----~~   84 (146)
T cd04013          28 RYYCELCLDKTLYARTTSKL---K-TDTLF---WGEHFEFS-------NL-----PPVSVITVNLYRESDKKKK----KD   84 (146)
T ss_pred             CceEEEEECCEEEEEEEEEc---C-CCCCc---ceeeEEec-------CC-----CcccEEEEEEEEccCcccc----cc
Confidence            4699999999543 554442   1 12222   23357773       11     1235789999842  2211    12


Q ss_pred             cceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCC-------CCCCcEEEEEEeec
Q 014188          113 KRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQET-------GKPGAELHLKVKLD  164 (429)
Q Consensus       113 ~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~-------~k~~aelHl~Vr~E  164 (429)
                      +.++||+|+||++-=. .+   ....+|..|=..+++.       .+++++||+.+|..
T Consensus        85 ~~~~IG~V~Ip~~~l~-~~---~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~  139 (146)
T cd04013          85 KSQLIGTVNIPVTDVS-SR---QFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQ  139 (146)
T ss_pred             CCcEEEEEEEEHHHhc-CC---CcccEEEEeecCCCCCccccccccCCCCEEEEEEEEE
Confidence            4469999999996311 12   2368999994432222       34778999998854

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=83.99  E-value=18  Score=29.97  Aligned_cols=99  Identities=15%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             CCceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188           34 SSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK  113 (429)
Q Consensus        34 sspC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~  113 (429)
                      .+-+||+|.+.+-+.+...-..+. ....|.= +---.|.+...             ....|+|.||.-.+-       +
T Consensus        20 ~~Dpyv~v~~~~~~~~~~kT~vv~-~t~nP~W-ne~f~f~i~~~-------------~~~~l~v~v~d~d~~-------~   77 (119)
T cd04036          20 TPDCYVELWLPTASDEKKRTKTIK-NSINPVW-NETFEFRIQSQ-------------VKNVLELTVMDEDYV-------M   77 (119)
T ss_pred             CCCcEEEEEEcCCCCccCccceec-CCCCCcc-ceEEEEEeCcc-------------cCCEEEEEEEECCCC-------C
Confidence            345799999976443222222231 1233431 11223444321             123699999995431       2


Q ss_pred             ceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeec
Q 014188          114 RHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLD  164 (429)
Q Consensus       114 r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~E  164 (429)
                      ..+||++.++|+- -..+.   -+..|..+.+      ++..+||+.+.+|
T Consensus        78 ~~~iG~~~~~l~~-l~~g~---~~~~~~~L~~------~~~g~l~~~~~~~  118 (119)
T cd04036          78 DDHLGTVLFDVSK-LKLGE---KVRVTFSLNP------QGKEELEVEFLLE  118 (119)
T ss_pred             CcccEEEEEEHHH-CCCCC---cEEEEEECCC------CCCceEEEEEEee
Confidence            3389999999962 22222   3788999864      2345999998887

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=83.30  E-value=4.4  Score=36.06  Aligned_cols=107  Identities=11%  Similarity=0.124  Sum_probs=58.6

Q ss_pred             CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188           35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR  114 (429)
Q Consensus        35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r  114 (429)
                      +-.||+|+|.+--.+|..   +......|.= +  -.|.+.-.+.           ....|.|.||.-..     +....
T Consensus        21 sDPYV~v~l~~~~~kTk~---~~~~t~nP~W-N--E~F~f~v~~~-----------~~~~l~v~V~d~~~-----~~~dd   78 (150)
T cd04019          21 PEVFVKAQLGNQVLRTRP---SQTRNGNPSW-N--EELMFVAAEP-----------FEDHLILSVEDRVG-----PNKDE   78 (150)
T ss_pred             CCeEEEEEECCEEeeeEe---ccCCCCCCcc-c--CcEEEEecCc-----------cCCeEEEEEEEecC-----CCCCC
Confidence            456999999983333332   2222233431 1  2244322111           11378888887432     11234


Q ss_pred             eeEEEEEEeecCCCCCCcceEEeeceeecCCCCc-----CCCCCCcEEEEEEeec
Q 014188          115 HQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQ-----ETGKPGAELHLKVKLD  164 (429)
Q Consensus       115 ~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~-----~~~k~~aelHl~Vr~E  164 (429)
                       +||+++|+|+--..+..+-...+.|..+-...+     +..|.+.+|||.+.+.
T Consensus        79 -~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          79 -PLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             -eEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence             899999999621111122244789999965321     3446778999987654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=82.14  E-value=14  Score=30.36  Aligned_cols=102  Identities=16%  Similarity=0.278  Sum_probs=57.3

Q ss_pred             ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188           36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH  115 (429)
Q Consensus        36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~  115 (429)
                      -.||+|++++...+|..+.    ....|.= +-...|++.+             .....|+|.||....-     +... 
T Consensus        25 dPyv~v~~~~~~~kT~~~~----~t~~P~W-ne~f~~~~~~-------------~~~~~l~i~v~d~~~~-----~~~~-   80 (128)
T cd04024          25 DPYAILSVGAQRFKTQTIP----NTLNPKW-NYWCEFPIFS-------------AQNQLLKLILWDKDRF-----AGKD-   80 (128)
T ss_pred             CCeEEEEECCEEEecceec----CCcCCcc-CCcEEEEecC-------------CCCCEEEEEEEECCCC-----CCCC-
Confidence            4599999987555554331    2233431 1123454432             1235899999986542     1223 


Q ss_pred             eEEEEEEeecCCCCCCcceEEeeceeecCC-CCcCCCCCCcEEEEEEe
Q 014188          116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGK-NKQETGKPGAELHLKVK  162 (429)
Q Consensus       116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk-~~~~~~k~~aelHl~Vr  162 (429)
                      +||+++++|+---..+. --.+..|+.+=. ...+..+..-+|||.+.
T Consensus        81 ~lG~~~i~l~~~~~~~~-~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~  127 (128)
T cd04024          81 YLGEFDIALEEVFADGK-TGQSDKWITLKSTRPGKTSVVSGEIHLQFS  127 (128)
T ss_pred             cceEEEEEHHHhhcccc-cCccceeEEccCcccCccccccceEEEEEE
Confidence            89999999963211111 113578999843 22233446779999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=81.55  E-value=22  Score=29.43  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             CCceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCc
Q 014188           34 SSPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIK  113 (429)
Q Consensus        34 sspC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~  113 (429)
                      +.-+||+|++.+.  |+..-+.+......|.= +-.-.|++.+..|    .     .....|.|.||.-++.     +..
T Consensus        20 ~~dpYv~v~~~~~--~~~~T~~~~~~~~~P~W-ne~f~f~v~~~~~----~-----~~~~~l~~~v~d~~~~-----~~~   82 (125)
T cd04051          20 KMKVYAVVWIDPS--HKQSTPVDRDGGTNPTW-NETLRFPLDERLL----Q-----QGRLALTIEVYCERPS-----LGD   82 (125)
T ss_pred             CCceEEEEEECCC--cccccccccCCCCCCCC-CCEEEEEcChHhc----c-----cCccEEEEEEEECCCC-----CCC
Confidence            4568999999872  22222233222234431 2234566665554    1     2246899999986542     123


Q ss_pred             ceeEEEEEEeec-C-CCCCCcceEEeeceeecCCCCcCCCCCCcEEEE
Q 014188          114 RHQIGTFKLEVG-P-EWGEGKPIILFNGWIGIGKNKQETGKPGAELHL  159 (429)
Q Consensus       114 r~llG~~~v~ld-l-~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl  159 (429)
                      + +||.+.++|. + .....+. .++-.|..+-+.   ++++..+||+
T Consensus        83 ~-~lG~~~i~l~~l~~~~~~~~-~~~~~~~~l~~~---~g~~~G~~~~  125 (125)
T cd04051          83 K-LIGEVRVPLKDLLDGASPAG-ELRFLSYQLRRP---SGKPQGVLNF  125 (125)
T ss_pred             C-cEEEEEEEHHHhhcccCCCC-cceeEEEEeECC---CCCcCeEEeC
Confidence            4 8999999995 3 2222111 357789888542   2567778885

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=81.14  E-value=13  Score=30.85  Aligned_cols=99  Identities=21%  Similarity=0.292  Sum_probs=57.4

Q ss_pred             ceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcce
Q 014188           36 PCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKRH  115 (429)
Q Consensus        36 pC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r~  115 (429)
                      -.||+|.+.+...+|..+.    ....|.= +-.-.|++.+.             ....|+|.||.-..     ++... 
T Consensus        22 DPyv~v~~~~~~~kT~v~~----~t~nP~W-ne~f~f~~~~~-------------~~~~l~~~v~d~~~-----~~~~~-   77 (123)
T cd04025          22 DPFVRVFYNGQTLETSVVK----KSCYPRW-NEVFEFELMEG-------------ADSPLSVEVWDWDL-----VSKND-   77 (123)
T ss_pred             CceEEEEECCEEEeceeec----CCCCCcc-CcEEEEEcCCC-------------CCCEEEEEEEECCC-----CCCCc-
Confidence            4599999988666665442    1223321 11233554431             13579999998543     12234 


Q ss_pred             eEEEEEEeecCCCCCCcceEEeeceeecCCC---CcCCCCCCcEEEEEEe
Q 014188          116 QIGTFKLEVGPEWGEGKPIILFNGWIGIGKN---KQETGKPGAELHLKVK  162 (429)
Q Consensus       116 llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~---~~~~~k~~aelHl~Vr  162 (429)
                      +||.+.++|+-- ..+..   +.+|..+-..   +.+.++..-+|++.||
T Consensus        78 ~iG~~~~~l~~l-~~~~~---~~~w~~L~~~~~~~~~~~~~~G~l~~~~~  123 (123)
T cd04025          78 FLGKVVFSIQTL-QQAKQ---EEGWFRLLPDPRAEEESGGNLGSLRLKVR  123 (123)
T ss_pred             EeEEEEEEHHHc-ccCCC---CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence            899999998621 11211   4789988542   2234456778998875

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=80.50  E-value=7.8  Score=34.62  Aligned_cols=100  Identities=22%  Similarity=0.304  Sum_probs=60.3

Q ss_pred             CCCceeEEEecCCCCc-ceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccC
Q 014188           33 FSSPCLCEIRLRGFPV-QTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVG  111 (429)
Q Consensus        33 ssspC~C~IrL~~fP~-qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~  111 (429)
                      -++-+||+|+|.+-.. +|..+   . .+..|.=+   -.|++.-.      ..      ...|+|.||.-..-      
T Consensus        56 g~sDPYv~V~l~~~~~~rT~v~---~-~~~nP~Wn---E~F~~~~~------~~------~~~l~~~V~d~d~~------  110 (158)
T cd04015          56 ITSDPYATVDLAGARVARTRVI---E-NSENPVWN---ESFHIYCA------HY------ASHVEFTVKDNDVV------  110 (158)
T ss_pred             CCcCeEEEEEECCeEeeEEEEe---C-CCCCCccc---eEEEEEcc------CC------CCEEEEEEEeCCCc------
Confidence            3467899999998654 44433   2 22345411   13443211      11      13689999986531      


Q ss_pred             CcceeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEe
Q 014188          112 IKRHQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVK  162 (429)
Q Consensus       112 ~~r~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr  162 (429)
                       +..+||++.++|+-- ..+.+   .+.|+.+=...++.-+.+++|||.++
T Consensus       111 -~~~~IG~~~i~l~~l-~~g~~---~~~w~~L~~~~~~~~~~~~~l~v~~~  156 (158)
T cd04015         111 -GAQLIGRAYIPVEDL-LSGEP---VEGWLPILDSNGKPPKPGAKIRVSLQ  156 (158)
T ss_pred             -CCcEEEEEEEEhHHc-cCCCC---cceEEECcCCCCCCCCCCCEEEEEEE
Confidence             124899999999731 12322   47999985433344467899999987

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	429
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	8e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 39.4 bits (91), Expect = 8e-04
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 15/72 (20%)

Query: 273 IVRPDACRAESWQPWGKLEAWRE-RGIRDSVCCRFHLLSEGQEAGEVLMSEILISAEKG- 330
           I + D    E       +  WRE +  R         L E   A +V+  E    A+K  
Sbjct: 74  IAQADRLTQEP----ESIRKWREEQRKR---------LQELDAASKVMEQEWREKAKKDL 120

Query: 331 GEFFIDTDKQLR 342
            E+     +Q+ 
Sbjct: 121 EEWNQRQSEQVE 132

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	429
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	82.39

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=82.39  E-value=16  Score=28.54  Aligned_cols=100  Identities=12%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             CceeEEEecCCCCcceeeeccccCCCCCCCCCCcceeeecCHHHHHHhhCCCCCCCCCceEEEEEEecCCCcccccCCcc
Q 014188           35 SPCLCEIRLRGFPVQTTQVPLVSSPEALPDIHSIASSFYLEESDLKALLTPGCFYSPHAYLEVVVFTGRKGFHCGVGIKR  114 (429)
Q Consensus        35 spC~C~IrL~~fP~qta~vPL~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~v~Vy~Gr~G~~CGv~~~r  114 (429)
                      +-.||+|++.+-+.++..-..+.. ...|.- +-...|.+...             ....|+|.||.-...      . .
T Consensus        27 ~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~w-ne~f~f~v~~~-------------~~~~l~i~V~d~d~~------~-~   84 (126)
T 1rlw_A           27 PDPYVELFISTTPDSRKRTRHFNN-DINPVW-NETFEFILDPN-------------QENVLEITLMDANYV------M-D   84 (126)
T ss_dssp             CCEEEEEECTTSTTCCEECCCCTT-CSSCEE-EEEEEEEECTT-------------SCCEEEEEEEECCSS------C-C
T ss_pred             CCCEEEEEEccCCCceEEccccCC-CCCCcc-cceEEEEecCC-------------CCCEEEEEEEECCCC------C-C
Confidence            345999999975543333333321 123321 11233444221             135899999986543      2 3


Q ss_pred             eeEEEEEEeecCCCCCCcceEEeeceeecCCCCcCCCCCCcEEEEEEeecCC
Q 014188          115 HQIGTFKLEVGPEWGEGKPIILFNGWIGIGKNKQETGKPGAELHLKVKLDPD  166 (429)
Q Consensus       115 ~llG~~~v~ldl~~ae~kp~v~h~GWi~iGk~~~~~~k~~aelHl~Vr~EpD  166 (429)
                      .+||.+.|+|.- -..+   .-|..|+.+-+.      ..-++|+.+...||
T Consensus        85 ~~iG~~~i~l~~-l~~~---~~~~~~~~L~~~------~~g~i~~~le~~~~  126 (126)
T 1rlw_A           85 ETLGTATFTVSS-MKVG---EKKEVPFIFNQV------TEMVLEMSLEVASS  126 (126)
T ss_dssp             EEEEEEEEEGGG-SCTT---CEEEEEEEETTT------EEEEEEEEEECCCC
T ss_pred             ceeEEEEEEHHH-ccCC---CcEEEEEEcCCC------ceEEEEEEEEeCCC
Confidence            389999999962 1223   256789998642      23466665555454

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00