Citrus Sinensis ID: 014190

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MFGRAGLDRFKKAQSLEPFSVAVNSAAKTASEAVTNPSTQCLHSQSYQQQPQYQNQHQISQNSIKQEASLSVGKAQQVTQIGGGQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKNTDALFARPPPATEINLPPPPDPSDEEAVVVYNTLINRYGLSKSDLICRSGEPSRSSIGRDDGQQPERAAKRIKKLRVSFRDQAGGELVEVVGISDGADVGTEPGPIGMKEGSLVGKYESLVQTTVIPKCKEKPSQKEENFLPKGVTDKLQEVLNKVKSGPKSRIYDDLYGDSFSGKVGSSWAYSSVSSTRPASPPEDAEGKTISMSREKPGNNSLTYDNDNDDLFGA
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEcccEEEEEcccccccEEccccccccccEEEEEEEcccEEEEEccccccEEEccEEccccccEEcccccEEEEcccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEEEccEEEEEccccccccEEccccccccEEEEEEEcccccEEEEEcccccccEEcccEcccccEEEEEcccEEEEccccEEEEEcccccccccccccHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHccccEEEEcHccccccEEEEEccccccccccccccccEEccccccEcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHcccccccccccccccccccc
mfgragldrfkkaqslepfSVAVNSAAKTAseavtnpstqclhsqsyqqqpqyqnqhqisqnSIKQEASLSVGKaqqvtqigggqstwqppdwaieprssvyyldvlkdgeildriNLDRRRHIFgrqfqtcdfvldhqsisrqhaaviphkngsiYVIDLgsahgtfvanerltketpvelevgqslrfAASTRTYILRKNtdalfarpppateinlppppdpsdeeAVVVYNTLINryglsksdlicrsgepsrssigrddgqqPERAAKRIKKLRVSFRDQAGGELVEVVgisdgadvgtepgpigmkegslvgkYESLVQTtvipkckekpsqkeenflpkgvTDKLQEVLNKVksgpksriyddlygdsfsgkvgsswayssvsstrpasppedaegktismsrekpgnnsltydndnddlfga
mfgragldrfkkaqslepfSVAVNSAAKTASEAVTNPSTQCLHSQSYQQQPQYQNQHQISQNSIKQEASLSVGKAQQVTQigggqstwqppdwaIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANErltketpvelevgqslrfaaSTRTYILRKNTDALFARPPPATEINLPPPPDPSDEEAVVVYNTLINryglsksdlicrsgepsrssigrddgqqpeRAAKRIKKlrvsfrdqaggelvevvgisdgadvgtepgpiGMKEGSLVGKYESLVQTtvipkckekpsqkeenflpkgvtdkLQEVLNKvksgpksriyddlYGDSFSGKVGSSWAYssvsstrpasppedaegktismsrekpgnnsltydndnddlfga
MFGRAGLDRFKKAQSLEPFSVAVNSAAKTASEAVTNPSTQCLhsqsyqqqpqyqnqhqisqnsikqEASLSVGKAQQVTQIGGGQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKNTDALFARPPPATEINLPPPPDPSDEEAVVVYNTLINRYGLSKSDLICRSGEPSRSSIGRDDGQQPERAAKRIKKLRVSFRDQAGGELVEVVGISDGADVGTEPGPIGMKEGSLVGKYESLVQTTVIPKCKEKPSQKEENFLPKGVTDKLQEVLNKVKSGPKSRIYDDLYGDSFSGKVGsswayssvssTRPASPPEDAEGKTISMSREKPGNNSLTYDNDNDDLFGA
**************************************************************************************TWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKNTDALF*********************AVVVYNTLINRYGLSKSDLIC*******************************F***AGGELVEVVGISDGA**************SLVGKYESLVQTTVI*************************************IYDDLYGDSF******************************************************
**************************************************************************************TWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKN*****************************************************************************************************************************************************************************************************************************DDLFG*
MFGRAGLDRFKKAQSLEPFSVAVN**************************************************************TWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKNTDALFARPPPATEINLPPPPDPSDEEAVVVYNTLINRYGLSKSDLICR*********************KRIKKLRVSFRDQAGGELVEVVGISDGADVGTEPGPIGMKEGSLVGKYESLVQTTVIPKCKEKPSQKEENFLPKGVTDKLQEVLNKVKSGPKSRIYDDLYGDSFSGKVG*************************SMSREKPGNNSLTYDNDNDDLFGA
********RFK*************************************************************************QSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKN*************INLPPPPDPSDEEAVVVYNTLINRYGLSK************************RA***IKKLRVSFRDQAGGELVEVVGISDGADVGTEPGPIGMKEGSLVGKYESLVQTTVIPKC************************************DD**GDSFSGKVGSSW**********************************************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFGRAGLDRFKKAQSLEPFSVAVNSAAKTASEAVTNPSTQCLHSQSYQQQPQYQNQHQISQNSIKQEASLSVGKAQQVTQIGGGQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKNTDALFARPPPATEINLPPPPDPSDEEAVVVYNTLINRYGLSKSDLICRSGEPSRSSIGRDDGQQPERAAKRIKKLRVSFRDQAGGELVEVVGISDGADVGTEPGPIGMKEGSLVGKYESLVQTTVIPKCKEKPSQKEENFLPKGVTDKLQEVLNKVKSGPKSRIYDDLYGDSFSGKVGSSWAYSSVSSTRPASPPEDAEGKTISMSREKPGNNSLTYDNDNDDLFGA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query429 2.2.26 [Sep-21-2011]
Q12972351 Nuclear inhibitor of prot yes no 0.268 0.327 0.389 1e-19
Q28147351 Nuclear inhibitor of prot yes no 0.268 0.327 0.389 1e-19
Q8R3G1351 Nuclear inhibitor of prot yes no 0.268 0.327 0.389 1e-19
Q9BWU0 796 Kanadaptin OS=Homo sapien no no 0.256 0.138 0.384 3e-13
P34648 710 Uncharacterized protein Z no no 0.249 0.150 0.283 2e-08
Q8TAD8396 Smad nuclear-interacting no no 0.254 0.275 0.306 5e-08
Q54VU41505 Probable serine/threonine no no 0.258 0.073 0.341 5e-08
Q8BIZ6383 Smad nuclear-interacting no no 0.254 0.284 0.306 7e-08
Q5M9G6389 Smad nuclear interacting no no 0.254 0.280 0.306 9e-08
Q8W4D8314 FHA domain-containing pro no no 0.312 0.426 0.298 6e-07
>sp|Q12972|PP1R8_HUMAN Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8 PE=1 SV=2 Back     alignment and function desciption
 Score = 97.8 bits (242), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 76/118 (64%), Gaps = 3/118 (2%)

Query: 91  PDWAIEPRSSVYYLDVLKDGEILDRINLDRRRH-IFGRQFQTCDFVLDHQSISRQHAAVI 149
           P WA +P   ++ LDV+K  ++++++ +D +++ +FGR    CDF +DHQS SR HAA++
Sbjct: 17  PTWAGKPPPGLH-LDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALV 75

Query: 150 PHKN-GSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKNTDAL 206
            HK+   +++IDL S HGTF+ + RL    P ++ +  ++ F ASTR Y LR+    L
Sbjct: 76  YHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQTL 133
Isoform Gamma is a site-specific single-strand endoribonuclease that cleaves single strand RNA 3' to purines and pyrimidines in A+U-rich regions. It generates 5'-phosphate termini at the site of cleavage. This isoform does not inhibit PP-1. May be implicated in mRNA splicing.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: -
>sp|Q28147|PP1R8_BOVIN Nuclear inhibitor of protein phosphatase 1 OS=Bos taurus GN=PPP1R8 PE=1 SV=1 Back     alignment and function description
>sp|Q8R3G1|PP1R8_MOUSE Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus GN=Ppp1r8 PE=1 SV=1 Back     alignment and function description
>sp|Q9BWU0|NADAP_HUMAN Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1 Back     alignment and function description
>sp|P34648|YOT2_CAEEL Uncharacterized protein ZK632.2 OS=Caenorhabditis elegans GN=ZK632.2 PE=4 SV=1 Back     alignment and function description
>sp|Q8TAD8|SNIP1_HUMAN Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1 SV=1 Back     alignment and function description
>sp|Q54VU4|Y8013_DICDI Probable serine/threonine-protein kinase DDB_G0280133 OS=Dictyostelium discoideum GN=DDB_G0280133 PE=3 SV=1 Back     alignment and function description
>sp|Q8BIZ6|SNIP1_MOUSE Smad nuclear-interacting protein 1 OS=Mus musculus GN=Snip1 PE=1 SV=1 Back     alignment and function description
>sp|Q5M9G6|SNIP1_RAT Smad nuclear interacting protein 1 OS=Rattus norvegicus GN=Snip1 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4D8|DDL_ARATH FHA domain-containing protein DDL OS=Arabidopsis thaliana GN=DDL PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
255568136426 nuclear inhibitor of protein phosphatase 0.946 0.953 0.686 1e-153
356532857420 PREDICTED: nuclear inhibitor of protein 0.965 0.985 0.677 1e-152
449443484426 PREDICTED: uncharacterized protein LOC10 0.979 0.985 0.674 1e-152
356555783425 PREDICTED: nuclear inhibitor of protein 0.974 0.983 0.682 1e-151
357448115432 Nuclear inhibitor of protein phosphatase 0.990 0.983 0.673 1e-150
359495612433 PREDICTED: uncharacterized protein LOC10 0.962 0.953 0.717 1e-150
224089537395 predicted protein [Populus trichocarpa] 0.916 0.994 0.685 1e-142
224124730397 predicted protein [Populus trichocarpa] 0.897 0.969 0.685 1e-142
242038923419 hypothetical protein SORBIDRAFT_01g01532 0.941 0.964 0.621 1e-138
413933708417 hypothetical protein ZEAMMB73_502037 [Ze 0.946 0.973 0.625 1e-138
>gi|255568136|ref|XP_002525044.1| nuclear inhibitor of protein phosphatase-1, putative [Ricinus communis] gi|223535706|gb|EEF37371.1| nuclear inhibitor of protein phosphatase-1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 294/428 (68%), Positives = 337/428 (78%), Gaps = 22/428 (5%)

Query: 1   MFGRAGLDRFKKAQSLEPFSVAVNSAAKTASE----AVTNPSTQCLHSQSYQQQPQYQNQ 56
           M+GRAGLDRFKKAQS +PFSV++NSA+KT S+    AV NPS   L SQ+  Q     N 
Sbjct: 1   MYGRAGLDRFKKAQSSDPFSVSINSASKTTSQHAPKAVANPSVLHLQSQTQSQYQYQSN- 59

Query: 57  HQISQNSIKQEASLSVGKAQQVTQIGGGQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRI 116
             + Q S+  EA   VG+ QQVTQ+GGGQS W PPDWAIEPR  VYYL+VLKDGE+LDRI
Sbjct: 60  --VPQKSVGLEAGPLVGQTQQVTQVGGGQSAWLPPDWAIEPRPGVYYLEVLKDGEVLDRI 117

Query: 117 NLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTK 176
           NLDRRRHIFGRQ   CDFVLDHQS+SRQHAAVIPHKNGSI+VIDLGSAHGTFVANERLTK
Sbjct: 118 NLDRRRHIFGRQAHACDFVLDHQSVSRQHAAVIPHKNGSIFVIDLGSAHGTFVANERLTK 177

Query: 177 ETPVELEVGQSLRFAASTRTYILRKNTDALFARPPPATEINLPPPPDPSDEEAVVVYNTL 236
           + PVELEVGQSLRFAASTRTYILRKN  ALF RPPP +EINLPPPPDP+DEEAVV YNTL
Sbjct: 178 DAPVELEVGQSLRFAASTRTYILRKNDAALFPRPPP-SEINLPPPPDPTDEEAVVAYNTL 236

Query: 237 INRYGLSKSDLICRSGEPSRSSI----GRDDGQQPERAAKRIKKLRVSFRDQAGGELVEV 292
           +NRYGL         G P+  S+    G++DGQQ  RA KR+KK RV F+DQ GGELVEV
Sbjct: 237 LNRYGL---------GNPNSKSVSTLSGQEDGQQSGRATKRLKKARVVFKDQVGGELVEV 287

Query: 293 VGISDGADVGTEPGPIGMKEGSLVGKYESLVQTTVIPKCKEKPSQKEENFLPKGVTDKLQ 352
           VG SDGADV TEPGP+G+KEGSLVGKYESL+QTTVIPK KE+  +KE N    GVT+KL+
Sbjct: 288 VGFSDGADVETEPGPLGVKEGSLVGKYESLIQTTVIPKGKEQLPKKENNASQAGVTNKLR 347

Query: 353 EVLNKVKSGPKSRIYDDLYGDSFSGKVGSSWAYSSVSSTRPASPP-EDAEGKTISMSREK 411
           EVLNKVK+ P+S IYDDLYG++FSGK+GS+WAYSSV+      P  +DA+ K I  S EK
Sbjct: 348 EVLNKVKTVPRSGIYDDLYGETFSGKLGSAWAYSSVTPGGKLDPSIKDAQQKAIGASSEK 407

Query: 412 PGNNSLTY 419
            GNNS ++
Sbjct: 408 LGNNSSSH 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356532857|ref|XP_003534986.1| PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449443484|ref|XP_004139507.1| PREDICTED: uncharacterized protein LOC101210909 isoform 1 [Cucumis sativus] gi|449443486|ref|XP_004139508.1| PREDICTED: uncharacterized protein LOC101210909 isoform 2 [Cucumis sativus] gi|449492805|ref|XP_004159106.1| PREDICTED: uncharacterized LOC101210909 isoform 1 [Cucumis sativus] gi|449492808|ref|XP_004159107.1| PREDICTED: uncharacterized LOC101210909 isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356555783|ref|XP_003546209.1| PREDICTED: nuclear inhibitor of protein phosphatase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357448115|ref|XP_003594333.1| Nuclear inhibitor of protein phosphatase [Medicago truncatula] gi|355483381|gb|AES64584.1| Nuclear inhibitor of protein phosphatase [Medicago truncatula] Back     alignment and taxonomy information
>gi|359495612|ref|XP_002265269.2| PREDICTED: uncharacterized protein LOC100243354 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224089537|ref|XP_002308749.1| predicted protein [Populus trichocarpa] gi|222854725|gb|EEE92272.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224124730|ref|XP_002329934.1| predicted protein [Populus trichocarpa] gi|222871956|gb|EEF09087.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|242038923|ref|XP_002466856.1| hypothetical protein SORBIDRAFT_01g015320 [Sorghum bicolor] gi|241920710|gb|EER93854.1| hypothetical protein SORBIDRAFT_01g015320 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|413933708|gb|AFW68259.1| hypothetical protein ZEAMMB73_502037 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
TAIR|locus:2160872369 AT5G47790 "AT5G47790" [Arabido 0.694 0.807 0.708 4e-122
UNIPROTKB|F1N9I1352 PPP1R8 "Uncharacterized protei 0.289 0.352 0.393 6e-26
FB|FBgn0026402383 NiPp1 "Nuclear inhibitor of Pr 0.356 0.399 0.361 7.5e-24
UNIPROTKB|A4FUE1351 PPP1R8 "Protein phosphatase 1, 0.268 0.327 0.389 1e-20
UNIPROTKB|Q28147351 PPP1R8 "Nuclear inhibitor of p 0.268 0.327 0.389 1e-20
UNIPROTKB|Q12972351 PPP1R8 "Nuclear inhibitor of p 0.268 0.327 0.389 1e-20
MGI|MGI:2140494351 Ppp1r8 "protein phosphatase 1, 0.268 0.327 0.389 1e-20
RGD|1306280351 Ppp1r8 "protein phosphatase 1, 0.268 0.327 0.389 1e-20
ZFIN|ZDB-GENE-040426-1271349 zgc:63827 "zgc:63827" [Danio r 0.265 0.326 0.376 8.1e-20
UNIPROTKB|I3LFB1350 PPP1R8 "Uncharacterized protei 0.268 0.328 0.389 8.4e-20
TAIR|locus:2160872 AT5G47790 "AT5G47790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1098 (391.6 bits), Expect = 4.0e-122, Sum P(3) = 4.0e-122
 Identities = 216/305 (70%), Positives = 247/305 (80%)

Query:    77 QVTQIGGGQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRHIFGRQFQTCDFVL 136
             Q TQIG GQS W PPDWAIEPR+ VY L+V+KDG+ILDRI+LDRRRHIFGRQ QTCDFVL
Sbjct:    41 QKTQIGAGQSNWHPPDWAIEPRAGVYSLEVVKDGQILDRIHLDRRRHIFGRQHQTCDFVL 100

Query:   137 DHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRT 196
             DHQS+SRQHAAV+PHKNGSI+VIDLGSAHGTFVANERLTK+TPVELEVGQSLRFAASTR 
Sbjct:   101 DHQSVSRQHAAVVPHKNGSIFVIDLGSAHGTFVANERLTKDTPVELEVGQSLRFAASTRI 160

Query:   197 YILRKNTDALFARPPPATEINLPPPPDPSDEEAVVVYNTLINRYGLSKSDLICRSGEPSR 256
             Y+LRKN++ALF+RPPP  EI LPPPPD SDEEAVV YNTL+NRYGLS  +     G+  +
Sbjct:   161 YLLRKNSEALFSRPPPPAEIKLPPPPDASDEEAVVAYNTLLNRYGLSNGESGGMLGK-RK 219

Query:   257 SSIGRDDGQQPERAAKRIKKLRVSFRDQAGGELVEVVGISDGADVGTEPGPIGMKEGSLV 316
                G + G      AKR+KK+RVSFRDQ GGEL E+VG+SDGADV TEPGPI +KEGSLV
Sbjct:   220 EKTGSEAG-----VAKRMKKVRVSFRDQLGGELAEIVGMSDGADVETEPGPINVKEGSLV 274

Query:   317 GKYESLVQTTVIPKCKEKPSQKEENFLPKGVTDKLQEVLNKVKSGPKSRIYDDLYG-DSF 375
             GKYESLV+ T+IPK K K  +        GVTD+LQE +N +K GPK+ IYDDLYG DS 
Sbjct:   275 GKYESLVRVTLIPKGKVKEEKAFTGGTRGGVTDRLQEAMNMLKRGPKTGIYDDLYGGDSL 334

Query:   376 SGKVG 380
             +  VG
Sbjct:   335 AKAVG 339
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|F1N9I1 PPP1R8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0026402 NiPp1 "Nuclear inhibitor of Protein phosphatase 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A4FUE1 PPP1R8 "Protein phosphatase 1, regulatory (Inhibitor) subunit 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q28147 PPP1R8 "Nuclear inhibitor of protein phosphatase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q12972 PPP1R8 "Nuclear inhibitor of protein phosphatase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2140494 Ppp1r8 "protein phosphatase 1, regulatory (inhibitor) subunit 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306280 Ppp1r8 "protein phosphatase 1, regulatory subunit 8" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1271 zgc:63827 "zgc:63827" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|I3LFB1 PPP1R8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.137.25.1
hypothetical protein (350 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 5e-21
pfam0049867 pfam00498, FHA, FHA domain 7e-17
smart0024052 smart00240, FHA, Forkhead associated domain 1e-12
COG1716191 COG1716, COG1716, FOG: FHA domain [Signal transduc 4e-06
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 87.1 bits (216), Expect = 5e-21
 Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 101 VYYLDVLKDGEILDRINLDRRRHI-FGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVI 159
           V  L VL       R  LD       GR    CD VLD  S+SR+HA +    +G + +I
Sbjct: 1   VPRLVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDGGVVLI 60

Query: 160 DLGSAHGTFVANERLTKETPVELEVGQSLRF 190
           DLGS +GTFV  +R++   PV L  G  +R 
Sbjct: 61  DLGSTNGTFVNGQRVSPGEPVRLRDGDVIRL 91

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 429
KOG1880337 consensus Nuclear inhibitor of phosphatase-1 [Gene 100.0
KOG1882293 consensus Transcriptional regulator SNIP1, contain 99.8
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.76
KOG1881 793 consensus Anion exchanger adaptor protein Kanadapt 99.71
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.63
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.53
TIGR03354396 VI_FHA type VI secretion system FHA domain protein 99.49
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.39
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.3
COG3456430 Predicted component of the type VI protein secreti 99.09
KOG0615475 consensus Serine/threonine protein kinase Chk2 and 98.55
TIGR02500410 type_III_yscD type III secretion apparatus protein 97.86
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 97.38
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 97.3
KOG1880337 consensus Nuclear inhibitor of phosphatase-1 [Gene 97.01
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 96.65
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 94.54
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 91.16
PRK15367395 type III secretion system protein SsaD; Provisiona 85.0
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-37  Score=301.55  Aligned_cols=247  Identities=39%  Similarity=0.664  Sum_probs=196.8

Q ss_pred             cccccCCCCCCCCCCccEEEEEEeCCceeeE-EEeCCCcEEEeccCCCCCEEeCCCCccccceEEEeeeCC-eEEEEECC
Q 014190           85 QSTWQPPDWAIEPRSSVYYLDVLKDGEILDR-INLDRRRHIFGRQFQTCDFVLDHQSISRQHAAVIPHKNG-SIYVIDLG  162 (429)
Q Consensus        85 ~~~~~~P~wa~~P~~~~~~L~V~k~g~~~~~-i~L~~~~~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g-~~~L~DLg  162 (429)
                      .+.|.+|.||.+|+++. +|.+.++...++. +.+.++.|+|||+...||++|+|.+|||+||.+.|+++. ++||+|||
T Consensus         2 ~s~~~~p~wA~kpp~g~-hldv~k~d~li~kl~iddkr~y~Fgrn~q~~df~idh~scSrvhaa~vyhkhl~~~~lidl~   80 (337)
T KOG1880|consen    2 QSNFDPPSWAGKPPAGL-HLDVVKGDKLIQKLIIDDKRRYLFGRNHQTCDFVIDHASCSRVHAALVYHKHLSRIFLIDLG   80 (337)
T ss_pred             CCcCCCCCcccCCCCCC-ceeeeecchhHHHHHhhhhhhhhhccCCCccceEeecchhhhhHhhhhhhhccceEEEEEcc
Confidence            46789999999999988 5666655555544 445555599999999999999999999999999999875 59999999


Q ss_pred             CCcceEEcCEEccCCCcEEecCCCEEEEcCeeEEEEEecCCcc--ccCCCCCCCCCCCC-CCCCCCChHHHHHHHHHhhH
Q 014190          163 SAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKNTDA--LFARPPPATEINLP-PPPDPSDEEAVVVYNTLINR  239 (429)
Q Consensus       163 StNGTfVNG~RL~~~kp~~L~~GD~I~fG~s~r~fil~~~~e~--~~~~~~pp~~~~lp-~p~~~~dee~l~~~nt~lnr  239 (429)
                      |++||||...||.+.++++|..|..++||.++|.|.++...+.  .+..++|+...... +++++.+++++++||+++|+
T Consensus        81 s~hgtf~g~~rL~~~~p~~l~i~~~~~fgasTr~y~lr~k~~~~~~~~~d~p~~~~~d~~lp~~~~e~e~~~~~nt~~n~  160 (337)
T KOG1880|consen   81 STHGTFLGNERLEPHKPVQLEIGSTFHFGASTRIYLLREKTEHHSLVSRDPPPAEISDEGLPPDATELDNLTEYNTAHNR  160 (337)
T ss_pred             CCcceeeeeeeeccCCCccccCCceEEEeccceeeeeecccCccccccCCCCcccccCCCCCCchhhhHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999988433  25555555555444 56677888999999999999


Q ss_pred             hcCCccccccccCCCCCCCCCCCCCC-chhHH-HhhhcccceeeecCCCCeeEEEecccCCCCCCCCCCCccCcCCCcce
Q 014190          240 YGLSKSDLICRSGEPSRSSIGRDDGQ-QPERA-AKRIKKLRVSFRDQAGGELVEVVGISDGADVGTEPGPIGMKEGSLVG  317 (429)
Q Consensus       240 ~~i~~~~l~~~s~e~~~~~~~~~~~~-~~~~~-~k~~~~~~v~f~~~~g~~~~e~i~~~~~~dv~~~~~~~~~~~g~~vg  317 (429)
                      | |              +.+|+..+. -.+++ +|+++-++|.|.+.     ++|||   +|||+           +.||
T Consensus       161 ~-i--------------s~~~~~~g~~~~q~~~kk~~~~~~vtf~~~-----~~iin---peqvd-----------p~v~  206 (337)
T KOG1880|consen  161 R-I--------------SSLGISGGNMLIQRKEKKGSNARVVTFMKK-----VRVIN---PEQVD-----------PNVA  206 (337)
T ss_pred             h-h--------------eeeeeccCcchhhhhhhhcccccceeeecc-----ceeeC---HhhcC-----------chhh
Confidence            9 6              334444442 13333 34445567999999     69998   99998           9999


Q ss_pred             eecceEEEEEecCCCCCCCccccCCCCccchhHHHHHHhhccC-CCCCCCCCCCCC
Q 014190          318 KYESLVQTTVIPKCKEKPSQKEENFLPKGVTDKLQEVLNKVKS-GPKSRIYDDLYG  372 (429)
Q Consensus       318 ~~~~~~q~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~  372 (429)
                      +|||+||++|+|.+|++.++.    +..++.+  .+..+.++. ..+.|||..|++
T Consensus       207 rfrnmvqtavvp~e~~rv~~~----Gsl~l~e--e~~~r~~q~f~~s~gl~~~~pp  256 (337)
T KOG1880|consen  207 RFRNMVQTAVVPVEKKRVEVP----GSLGLEE--ESGVRVMQNFAFSVGLYGGLPP  256 (337)
T ss_pred             hhhcCcccccccccccccccC----Ccccccc--cccceeecccccccceecccCC
Confidence            999999999999998888773    3333433  135566777 888889999998

>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PRK15367 type III secretion system protein SsaD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
2jpe_A140 Fha Domain Of Nipp1 Length = 140 9e-20
4h87_A130 Crystal Structure Of A Fha Domain Of Kanadaptin (Sl 1e-12
3vpy_A145 Crystal Structure Of Arabidopsis Ddl Fha Domain Len 1e-06
3gqs_A106 Crystal Structure Of The Fha Domain Of Ct664 Protei 2e-05
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1 Length = 140 Back     alignment and structure 
Iteration: 1

 Score = 94.7 bits (234), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 77/122 (63%), Gaps = 3/122 (2%)
Query: 82  GGGQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRRH-IFGRQFQTCDFVLDHQS 140
           G     +  P WA +P   ++ LDV+K  ++++++ +D +++ +FGR    CDF +DHQS
Sbjct: 16  GSSLPLFDCPTWAGKPPPGLH-LDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQS 74
Query: 141 ISRQHAAVIPHKN-GSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYIL 199
            SR HAA++ HK+   +++IDL S HGTF+ + RL    P ++ +  ++ F ASTR Y L
Sbjct: 75  CSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTL 134
Query: 200 RK 201
           R+
Sbjct: 135 RE 136
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap) From Homo Sapiens At 1.55 A Resolution Length = 130 Back     alignment and structure
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain Length = 145 Back     alignment and structure
>pdb|3GQS|A Chain A, Crystal Structure Of The Fha Domain Of Ct664 Protein From Chlamydia Trachomatis Length = 106 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 2e-38
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 9e-22
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 1e-21
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 1e-19
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 2e-19
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 3e-17
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 2e-15
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 2e-15
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 4e-15
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 5e-15
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 7e-15
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 6e-14
2xt9_B115 Putative signal transduction protein GARA; lyase-s 2e-13
3po8_A100 RV0020C protein, putative uncharacterized protein 5e-13
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 5e-13
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 7e-13
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 1e-12
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 2e-12
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 3e-11
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 4e-11
3huf_A325 DNA repair and telomere maintenance protein NBS1; 1e-09
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 1e-08
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 1e-06
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 9e-06
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 2e-05
2eh0_A130 KLP, kinesin-like protein KIF1B; FHA domain, KIAA0 1e-04
2g1l_A104 Kinesin-like protein KIF1C; transport, FHA domain, 1e-04
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
 Score =  135 bits (340), Expect = 2e-38
 Identities = 46/131 (35%), Positives = 75/131 (57%), Gaps = 3/131 (2%)

Query: 73  GKAQQVTQIGGGQSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRR-HIFGRQFQT 131
                    G     +  P WA +P     +LDV+K  ++++++ +D ++ ++FGR    
Sbjct: 7   NSMAAAVNSGSSLPLFDCPTWAGKPPPG-LHLDVVKGDKLIEKLIIDEKKYYLFGRNPDL 65

Query: 132 CDFVLDHQSISRQHAAVIPHK-NGSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRF 190
           CDF +DHQS SR HAA++ HK    +++IDL S HGTF+ + RL    P ++ +  ++ F
Sbjct: 66  CDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSF 125

Query: 191 AASTRTYILRK 201
            ASTR Y LR+
Sbjct: 126 GASTRAYTLRE 136
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Length = 325 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Length = 158 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Length = 124 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 182 Back     alignment and structure
>2eh0_A KLP, kinesin-like protein KIF1B; FHA domain, KIAA0591, KIAA1448, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130 Back     alignment and structure
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural genomics consortium, kines transport protein; 2.60A {Homo sapiens} SCOP: b.26.1.2 Length = 104 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.96
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.93
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.92
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.91
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.87
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.85
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.85
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.85
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.84
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.84
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.83
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.83
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.82
3po8_A100 RV0020C protein, putative uncharacterized protein 99.82
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.81
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.81
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.81
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.8
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.8
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.79
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.78
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.77
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.76
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.74
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.74
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.69
3huf_A325 DNA repair and telomere maintenance protein NBS1; 99.68
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.65
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.61
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.42
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.4
4a0e_A123 YSCD, type III secretion protein; transport protei 99.4
3v4y_B62 Nuclear inhibitor of protein phosphatase 1; PP1, S 99.2
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.19
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 99.08
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.03
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.97
1wv3_A238 Similar to DNA segregation ATPase and related prot 98.91
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.86
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
Probab=99.96  E-value=1.9e-29  Score=221.67  Aligned_cols=115  Identities=37%  Similarity=0.670  Sum_probs=103.7

Q ss_pred             cccccCCCCCCCCCCccEEEEEEeCCceeeEEEeCCCc-EEEeccCCCCCEEeCCCCccccceEEEee----------eC
Q 014190           85 QSTWQPPDWAIEPRSSVYYLDVLKDGEILDRINLDRRR-HIFGRQFQTCDFVLDHQSISRQHAAVIPH----------KN  153 (429)
Q Consensus        85 ~~~~~~P~wa~~P~~~~~~L~V~k~g~~~~~i~L~~~~-~~IGRd~~~cDIvLdd~sVSR~HA~I~~~----------~~  153 (429)
                      .++|.+|+||.+|. ..|+|.|++++..++++.|..+. |+|||+ ..|||+|+|+.|||+||+|+++          ..
T Consensus         5 ~ppy~~P~wa~~p~-~~~~L~v~k~g~~~~~~~L~~~~~~~IGR~-~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~   82 (130)
T 4h87_A            5 APPYQEPPWGGPAT-APYSLETLKGGTILGTRSLKGTSYCLFGRL-SGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNG   82 (130)
T ss_dssp             CCSCCCCTTBCCCC-SCCEEEEEETTEEEEEEECTTCSEEEEESS-TTSSEECCCTTSCSSCEEEEEBCCCCCC------
T ss_pred             CcCCCCCCCccCCC-CCEEEEEEECCeeeeeEEeCCCceEEEcCC-cCCCEEeCCCCcchhcEEEEEecccCccceeccC
Confidence            35699999998776 56899999999999999999877 899995 8999999999999999999864          23


Q ss_pred             CeEEEEECCCCcceEEcCEEccCCCcEEecCCCEEEEcCeeEEEEEec
Q 014190          154 GSIYVIDLGSAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRK  201 (429)
Q Consensus       154 g~~~L~DLgStNGTfVNG~RL~~~kp~~L~~GD~I~fG~s~r~fil~~  201 (429)
                      +.|||+||+|+|||||||+||.++++++|++||+|+||.+++.|+|+.
T Consensus        83 ~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl~G  130 (130)
T 4h87_A           83 PGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQG  130 (130)
T ss_dssp             CCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEETTCSEEEEEEC
T ss_pred             CcceEeeCCCCCceEECCEECCCCceeECCCCCEEEECCceEEEEEcC
Confidence            579999999999999999999999999999999999999999999873
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3v4y_B Nuclear inhibitor of protein phosphatase 1; PP1, Ser/Thr phosphatase, NIPP1, IDP, hydrolase; HET: GOL 15P; 2.10A {Homo sapiens} Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 429
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 3e-16
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 1e-12
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 2e-11
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 7e-11
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 8e-11
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 1e-10
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 1e-09
d1lgpa_113 b.26.1.2 (A:) Cell cycle checkpoint protein Chfr { 2e-09
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 5e-09
d2g1la1102 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H 1e-07
d1wlna1107 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [T 2e-05
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.4 bits (177), Expect = 3e-16
 Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 8/111 (7%)

Query: 104 LDVLKDGEILDRINLDRRRHI-FGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLG 162
           L  +K     D ++      I  GR  +  +  +    IS +H   I   +G+  + DLG
Sbjct: 15  LVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHL-RIESDSGNWVIQDLG 73

Query: 163 SAHGTFVANERLTKETPVELEVGQSLRFAASTRTYILRKNTDALFARPPPA 213
           S++GT + +  L  ET V L  G  ++    T   +         + P   
Sbjct: 74  SSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILV------NFVSGPSSG 118
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.86
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.83
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.82
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.76
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.76
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.76
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.73
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.7
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.7
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.66
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.65
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.86  E-value=5e-22  Score=169.63  Aligned_cols=99  Identities=22%  Similarity=0.314  Sum_probs=88.4

Q ss_pred             cEEEEEEeCCceeeEEEeCCCc-EEEeccCCCCCEEeCCCCccccceEEEeeeCCeEEEEECCCCcceEEcCEEccCCCc
Q 014190          101 VYYLDVLKDGEILDRINLDRRR-HIFGRQFQTCDFVLDHQSISRQHAAVIPHKNGSIYVIDLGSAHGTFVANERLTKETP  179 (429)
Q Consensus       101 ~~~L~V~k~g~~~~~i~L~~~~-~~IGRd~~~cDIvLdd~sVSR~HA~I~~~~~g~~~L~DLgStNGTfVNG~RL~~~kp  179 (429)
                      .++|+++++...++.+.|..+. ++|||+...|||+|+|+.|||+||+|+++ ++.|+|+|++|+|||||||++|.++.+
T Consensus        12 ~l~L~v~~Gp~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~VSr~Ha~i~~~-~~~~~i~Dl~S~nGT~vng~~l~~~~~   90 (118)
T d1uhta_          12 SLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD-SGNWVIQDLGSSNGTLLNSNALDPETS   90 (118)
T ss_dssp             EEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC-SSSEEEECCCCSSCCEESSSBCCTTCE
T ss_pred             cEEEEEEeCCCCCcEEEeCCCCEEEECCCCcCCeEEeCccCcchheeEEEEE-CCEEEEEECCCcceeEECCEEcCCCcE
Confidence            4689999988888889997665 88999656899999999999999999986 668999999999999999999998899


Q ss_pred             EEecCCCEEEEcCeeEEEEEe
Q 014190          180 VELEVGQSLRFAASTRTYILR  200 (429)
Q Consensus       180 ~~L~~GD~I~fG~s~r~fil~  200 (429)
                      ++|.+||+|+||.+++.|+..
T Consensus        91 ~~L~~Gd~i~lG~~~~~~v~~  111 (118)
T d1uhta_          91 VNLGDGDVIKLGEYTSILVNF  111 (118)
T ss_dssp             EECCTTEEEEETTTEEEEEEE
T ss_pred             EECCCCCEEEECCEEEEEEEe
Confidence            999999999999988777643
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure