Citrus Sinensis ID: 014199

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
ccccccccccccHHHHHHHHHccccEEEEcccccccccccccccccccEEEEEEEccccccccccEEEEccccccccccHHHccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccEEEEccccccccccccccccccHHHHHcccccHHHHHccccccccccccccccccccHHHHHHccccccccccccccccccccccccEEEEEccEEEEEccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccEEEEEEccccEEEEEEccccccccccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHccccccccc
cccccccccccHHHHHHHHHHccccEEEEccccEEEEcccccccccccEEEEEEEcccccHHHcHEEEEEcccccccccHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEcccccccHHHHccccccccHHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHcccccccccccEEccccccccEEEEEEccEEEEEccccccccccEEEEEccccccHccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEEEccHHHHHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHccccccEEEEEEcccccEEEEEcccccccHHHHHHHHHHHcccccHHcHccccccHHHHHHHHHHHHHHcccccccc
mlvgisdssntdsTVSELVAEIkpryhiagskgvfyarepysnvdaVHVTRFlglapvgnkekqkfihalsptpaatmsaadismktpnttlspytfldqgshskeaakrpsdsvsdsqywrydvsqkrqkhgggdgdkMCFKFiysgscprgekcnfrhdtdaREQCLRGVCLDFiikgkcekgpecsykhslqnddsqrthrsenasanrskecwfclsspsveshLIVSVGEYYycalpkgplvedhvlvipvehvpntistspECEKELGRFQNSLMMYYKNQGKEAVFFEWLskrgthanlqavpiptskaaAVQDIFNLAAEKLGFKFLatksskssdgrrsLRAQFdrncsffyvelpegtvlshlieenerfpaqFGREVLAGLLNIAdkadwrncmlgkeeETKMVEDFKKRFEAFDPNQ
mlvgisdssntdsTVSELVAeikpryhiagskgvFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSkeaakrpsdsvsdsqywRYDVsqkrqkhgggdgdKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKcekgpecsykhslqnddsqrtHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHvpntistspecEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFlatksskssdgrrslRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
MLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
*****************LVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIH****************************************************W****************DKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEK******************************ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLA**************AQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLG**********************
*********NTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTP*******************************************************************FKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDF***************************************CWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSS*SSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
***************SELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQG****************SQYWRYDV**********DGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPEC*************************KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLAT***********LRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
*******SSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQG*************************************KMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKG********************************SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
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MLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKRFEAFDPNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query429 2.2.26 [Sep-21-2011]
Q84WU9596 Zinc finger CCCH domain-c yes no 0.979 0.704 0.682 1e-172
Q69NK8613 Zinc finger CCCH domain-c yes no 0.983 0.688 0.593 1e-151
Q5RGJ5544 CWF19-like protein 1 OS=D yes no 0.813 0.641 0.287 3e-47
Q8AVL0540 CWF19-like protein 1 OS=X N/A no 0.804 0.638 0.316 5e-47
O16216533 CWF19-like protein 1 homo yes no 0.801 0.645 0.305 3e-43
Q8CI33537 CWF19-like protein 1 OS=M yes no 0.470 0.376 0.404 1e-38
Q5R8R4538 CWF19-like protein 1 OS=P yes no 0.470 0.375 0.390 1e-37
Q69YN2538 CWF19-like protein 1 OS=H yes no 0.470 0.375 0.386 3e-37
Q10414561 CWF19-like protein mug161 yes no 0.801 0.613 0.269 6e-33
A1Z8J0545 CWF19-like protein 1 homo yes no 0.510 0.401 0.344 2e-32
>sp|Q84WU9|C3H64_ARATH Zinc finger CCCH domain-containing protein 64 OS=Arabidopsis thaliana GN=At5g56900 PE=2 SV=1 Back     alignment and function desciption
 Score =  603 bits (1556), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 292/428 (68%), Positives = 345/428 (80%), Gaps = 8/428 (1%)

Query: 3   VGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 62
           VGISDSS +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA VGNK 
Sbjct: 176 VGISDSSCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKN 235

Query: 63  KQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWR 122
           KQKF+HALSPTP +TMS A++S K P TTL PY   D  + SK   KRP+DS SDSQYWR
Sbjct: 236 KQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESK---KRPNDSDSDSQYWR 292

Query: 123 YDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKC 182
           YDV  KRQK  G  G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD IIKGKC
Sbjct: 293 YDVP-KRQK-SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKC 350

Query: 183 EKGPECSYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCAL 241
           EKGPECSYKH  Q++ S QR  RSENA  NRSKECWFCLSSPSVESHLIVSVGE +YCAL
Sbjct: 351 EKGPECSYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESFYCAL 408

Query: 242 PKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRG 301
           PKG LVEDH+L+IP+EH+PNT+  SPE E EL R+QN L   YK+QG +AVFFE +SKR 
Sbjct: 409 PKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRV 468

Query: 302 THANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFY 361
           +HANLQ VP+P+S+A  + +IF+LAAEKLGFK +  K + S+DGR+ L+ +++     FY
Sbjct: 469 SHANLQVVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFY 528

Query: 362 VELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKR 421
           VELP+GTVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ EDFKK+
Sbjct: 529 VELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQ 588

Query: 422 FEAFDPNQ 429
           F+ FDP Q
Sbjct: 589 FQEFDPCQ 596

Arabidopsis thaliana (taxid: 3702)
>sp|Q69NK8|C3H59_ORYSJ Zinc finger CCCH domain-containing protein 59 OS=Oryza sativa subsp. japonica GN=Os09g0364000 PE=2 SV=1 Back     alignment and function description
>sp|Q5RGJ5|C19L1_DANRE CWF19-like protein 1 OS=Danio rerio GN=cwf19l1 PE=2 SV=1 Back     alignment and function description
>sp|Q8AVL0|C19L1_XENLA CWF19-like protein 1 OS=Xenopus laevis GN=cwf19l1 PE=2 SV=1 Back     alignment and function description
>sp|O16216|C19L1_CAEEL CWF19-like protein 1 homolog OS=Caenorhabditis elegans GN=F17A9.2 PE=3 SV=2 Back     alignment and function description
>sp|Q8CI33|C19L1_MOUSE CWF19-like protein 1 OS=Mus musculus GN=Cwf19l1 PE=2 SV=2 Back     alignment and function description
>sp|Q5R8R4|C19L1_PONAB CWF19-like protein 1 OS=Pongo abelii GN=CWF19L1 PE=2 SV=1 Back     alignment and function description
>sp|Q69YN2|C19L1_HUMAN CWF19-like protein 1 OS=Homo sapiens GN=CWF19L1 PE=1 SV=2 Back     alignment and function description
>sp|Q10414|MU161_SCHPO CWF19-like protein mug161 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mug161 PE=1 SV=1 Back     alignment and function description
>sp|A1Z8J0|C19L1_DROME CWF19-like protein 1 homolog OS=Drosophila melanogaster GN=CG7741 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
297738661 593 unnamed protein product [Vitis vinifera] 0.993 0.718 0.722 0.0
359484480 607 PREDICTED: zinc finger CCCH domain-conta 0.993 0.701 0.722 0.0
224112144 606 predicted protein [Populus trichocarpa] 0.993 0.702 0.720 0.0
255546111 606 nucleic acid binding protein, putative [ 0.988 0.699 0.707 0.0
449435870 606 PREDICTED: zinc finger CCCH domain-conta 0.993 0.702 0.719 0.0
356547875 601 PREDICTED: zinc finger CCCH domain-conta 0.988 0.705 0.676 1e-176
297796575 603 hypothetical protein ARALYDRAFT_495780 [ 0.979 0.696 0.684 1e-171
145362692 596 zinc finger CCCH domain-containing prote 0.979 0.704 0.682 1e-170
8777430 593 unnamed protein product [Arabidopsis tha 0.979 0.708 0.682 1e-170
22327900404 zinc finger CCCH domain-containing prote 0.937 0.995 0.675 1e-162
>gi|297738661|emb|CBI27906.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/429 (72%), Positives = 365/429 (85%), Gaps = 3/429 (0%)

Query: 4   GISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEK 63
           GISDSS  DS +SELV EIKPRYHIAG+KG+FY REPYSN+DAVHVTRFLGLAPVGNK+K
Sbjct: 165 GISDSSGCDSAISELVGEIKPRYHIAGTKGIFYDREPYSNLDAVHVTRFLGLAPVGNKDK 224

Query: 64  QKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRY 123
           QKFIHA+SP PA+TMS+A+ISMK PNTTL PY  +++ + + +A KRPSDS+SD+QYWRY
Sbjct: 225 QKFIHAISPIPASTMSSAEISMKPPNTTLFPYKIIEETAPTNQATKRPSDSISDTQYWRY 284

Query: 124 DVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCE 183
           DVSQKRQKHG GDGDK+CFKF+ SGSCPRG KCNF HDT+AREQ +RGVC DFI KGKCE
Sbjct: 285 DVSQKRQKHGAGDGDKLCFKFVSSGSCPRGNKCNFLHDTEAREQYMRGVCFDFINKGKCE 344

Query: 184 KGPECSYKHSLQNDD---SQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCA 240
           +GP+C++KHSLQ++D   + R   SENA ++RSK CWFCLSSP VESHLI+S+GE YYCA
Sbjct: 345 RGPDCNFKHSLQDEDEGFASRRSGSENAKSSRSKRCWFCLSSPDVESHLIISIGESYYCA 404

Query: 241 LPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKR 300
           L KGPLVED VLVIPVEH  NT+S  PECE EL RFQ SL MY++ QGKE VFFEW+ KR
Sbjct: 405 LAKGPLVEDQVLVIPVEHSANTLSLPPECEIELDRFQKSLKMYFRTQGKEVVFFEWIFKR 464

Query: 301 GTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFF 360
           GTHAN+QAVPIP S+A+AV++IF LAAEKLGF+F+ TKS+  S+GR+SLRAQFD   SFF
Sbjct: 465 GTHANIQAVPIPLSRASAVKNIFILAAEKLGFQFVTTKSNNDSEGRKSLRAQFDDKISFF 524

Query: 361 YVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKK 420
           YVELP+GT+LSH IE+NE+FP QFGREVLAGLLN+AD+ADWRNC   KE+E KM E FK 
Sbjct: 525 YVELPDGTILSHAIEDNEKFPVQFGREVLAGLLNMADRADWRNCKQSKEDEMKMAEVFKN 584

Query: 421 RFEAFDPNQ 429
           +F+ FDP Q
Sbjct: 585 QFKKFDPYQ 593

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359484480|ref|XP_002279554.2| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112144|ref|XP_002332828.1| predicted protein [Populus trichocarpa] gi|222833259|gb|EEE71736.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255546111|ref|XP_002514115.1| nucleic acid binding protein, putative [Ricinus communis] gi|223546571|gb|EEF48069.1| nucleic acid binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449435870|ref|XP_004135717.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Cucumis sativus] gi|449489882|ref|XP_004158448.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356547875|ref|XP_003542330.1| PREDICTED: zinc finger CCCH domain-containing protein 64-like [Glycine max] Back     alignment and taxonomy information
>gi|297796575|ref|XP_002866172.1| hypothetical protein ARALYDRAFT_495780 [Arabidopsis lyrata subsp. lyrata] gi|297312007|gb|EFH42431.1| hypothetical protein ARALYDRAFT_495780 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|145362692|ref|NP_974945.2| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] gi|75243460|sp|Q84WU9.1|C3H64_ARATH RecName: Full=Zinc finger CCCH domain-containing protein 64; Short=AtC3H64 gi|27754231|gb|AAO22569.1| unknown protein [Arabidopsis thaliana] gi|332009438|gb|AED96821.1| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|8777430|dbj|BAA97020.1| unnamed protein product [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|22327900|ref|NP_200500.2| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] gi|332009437|gb|AED96820.1| zinc finger CCCH domain-containing protein 64 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
TAIR|locus:2164630596 AT5G56900 [Arabidopsis thalian 0.979 0.704 0.682 8.6e-159
UNIPROTKB|F1S8V2540 CWF19L1 "Uncharacterized prote 0.470 0.374 0.413 4.8e-58
MGI|MGI:1919752537 Cwf19l1 "CWF19-like 1, cell cy 0.470 0.376 0.413 1.3e-57
UNIPROTKB|E1BG07539 CWF19L1 "Uncharacterized prote 0.470 0.374 0.409 1.6e-57
UNIPROTKB|E2RJE9537 CWF19L1 "Uncharacterized prote 0.529 0.422 0.390 2.6e-57
RGD|1304716537 Cwf19l1 "CWF19-like 1, cell cy 0.470 0.376 0.404 2.9e-56
UNIPROTKB|Q69YN2538 CWF19L1 "CWF19-like protein 1" 0.470 0.375 0.395 1.3e-55
ZFIN|ZDB-GENE-031204-5544 cwf19l1 "CWF19-like 1, cell cy 0.585 0.461 0.333 1.4e-54
FB|FBgn0033615545 CG7741 [Drosophila melanogaste 0.510 0.401 0.344 4.3e-51
UNIPROTKB|E1C959548 E1C959 "Uncharacterized protei 0.470 0.368 0.350 2.3e-49
TAIR|locus:2164630 AT5G56900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1547 (549.6 bits), Expect = 8.6e-159, P = 8.6e-159
 Identities = 292/428 (68%), Positives = 345/428 (80%)

Query:     3 VGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 62
             VGISDSS +DSTVSELV E+KPRYHIAGS GVFYAREPY N ++ HVTRF+GLA VGNK 
Sbjct:   176 VGISDSSCSDSTVSELVMEVKPRYHIAGSMGVFYAREPYLNAESTHVTRFIGLAQVGNKN 235

Query:    63 KQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWR 122
             KQKF+HALSPTP +TMS A++S K P TTL PY   D  + SK   KRP+DS SDSQYWR
Sbjct:   236 KQKFLHALSPTPTSTMSPAELSAKPPKTTLWPYNLQDGAAESK---KRPNDSDSDSQYWR 292

Query:   123 YDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKC 182
             YDV  KRQK  G  G+K+CFKF+ SGSCPRGE C+F+H+ +AREQC RGVCLD IIKGKC
Sbjct:   293 YDVP-KRQK-SGSQGEKLCFKFVCSGSCPRGEDCHFQHNAEAREQCRRGVCLDLIIKGKC 350

Query:   183 EKGPECSYKHSLQNDDS-QRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYCAL 241
             EKGPECSYKH  Q++ S QR  RSENA  NRSKECWFCLSSPSVESHLIVSVGE +YCAL
Sbjct:   351 EKGPECSYKHEFQDESSIQRKPRSENA--NRSKECWFCLSSPSVESHLIVSVGESFYCAL 408

Query:   242 PKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRG 301
             PKG LVEDH+L+IP+EH+PNT+  SPE E EL R+QN L   YK+QG +AVFFE +SKR 
Sbjct:   409 PKGSLVEDHILIIPIEHLPNTLVLSPEVESELSRYQNGLRNCYKSQGNDAVFFELVSKRV 468

Query:   302 THANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFY 361
             +HANLQ VP+P+S+A  + +IF+LAAEKLGFK +  K + S+DGR+ L+ +++     FY
Sbjct:   469 SHANLQVVPVPSSRARLLPNIFSLAAEKLGFKLVTKKFNDSTDGRKYLQKEYNAALGLFY 528

Query:   362 VELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKADWRNCMLGKEEETKMVEDFKKR 421
             VELP+GTVLSH +EENE FPAQFGREVLAGLL I D+ADWRNC + +EEE K+ EDFKK+
Sbjct:   529 VELPDGTVLSHTLEENEVFPAQFGREVLAGLLKIPDRADWRNCKISQEEEAKLAEDFKKQ 588

Query:   422 FEAFDPNQ 429
             F+ FDP Q
Sbjct:   589 FQEFDPCQ 596
GO:0003676 "nucleic acid binding" evidence=IEA;ISS
GO:0003824 "catalytic activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008270 "zinc ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
UNIPROTKB|F1S8V2 CWF19L1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1919752 Cwf19l1 "CWF19-like 1, cell cycle control (S. pombe)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BG07 CWF19L1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RJE9 CWF19L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1304716 Cwf19l1 "CWF19-like 1, cell cycle control (S. pombe)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q69YN2 CWF19L1 "CWF19-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031204-5 cwf19l1 "CWF19-like 1, cell cycle control" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0033615 CG7741 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E1C959 E1C959 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q69NK8C3H59_ORYSJNo assigned EC number0.59380.98360.6884yesno
Q84WU9C3H64_ARATHNo assigned EC number0.68220.97900.7046yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.02850004
hypothetical protein (606 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
pfam04677122 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-ter 4e-42
pfam0467697 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-ter 6e-27
cd07380150 cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CW 1e-15
COG5084285 COG5084, YTH1, Cleavage and polyadenylation specif 0.004
>gnl|CDD|218208 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1 Back     alignment and domain information 
 Score =  144 bits (365), Expect = 4e-42
 Identities = 53/115 (46%), Positives = 75/115 (65%)

Query: 209 SANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPE 268
                  CWFCLS+P++E HLIVS+G   Y ALPKGPLV  H L+IP++H+P+T+S   E
Sbjct: 7   IKILPDSCWFCLSNPNLEKHLIVSIGNKAYLALPKGPLVSGHCLIIPIQHIPSTLSLDEE 66

Query: 269 CEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIF 323
              E+  F+ +L + YK+QGK+AVFFE  S+R  H ++Q +P+P S +      F
Sbjct: 67  VWDEIRNFRKALTLMYKSQGKDAVFFEIASQRRPHLHIQCIPVPKSISKLAPLYF 121

This region is found in the N terminus of Schizosaccharomyces pombe protein CwfJ. CwfJ is part of the Cdc5p complex involved in mRNA splicing. Length = 122
>gnl|CDD|218207 pfam04676, CwfJ_C_2, Protein similar to CwfJ C-terminus 2 Back     alignment and domain information
>gnl|CDD|163623 cd07380, MPP_CWF19_N, Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>gnl|CDD|227416 COG5084, YTH1, Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 429
KOG2476528 consensus Uncharacterized conserved protein [Funct 100.0
KOG2477628 consensus Uncharacterized conserved protein [Funct 100.0
PF04677121 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; In 100.0
PF0467698 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; In 99.96
PRK10687119 purine nucleoside phosphoramidase; Provisional 99.76
COG0537138 Hit Diadenosine tetraphosphate (Ap4A) hydrolase an 99.73
cd01275126 FHIT FHIT (fragile histidine family): FHIT protein 99.67
cd01277103 HINT_subgroup HINT (histidine triad nucleotide-bin 99.66
cd07380150 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and re 99.65
cd01276104 PKCI_related Protein Kinase C Interacting protein 99.61
PF0123098 HIT: HIT domain; InterPro: IPR001310 The Histidine 99.56
cd01278104 aprataxin_related aprataxin related: Aprataxin, a 99.5
KOG3275127 consensus Zinc-binding protein of the histidine tr 99.48
cd0046886 HIT_like HIT family: HIT (Histidine triad) protein 99.45
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 99.25
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 99.22
KOG3379150 consensus Diadenosine polyphosphate hydrolase and 99.11
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 99.07
PLN02643336 ADP-glucose phosphorylase 99.06
PF11969116 DcpS_C: Scavenger mRNA decapping enzyme C-term bin 98.99
cd00844262 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-t 98.85
KOG4359166 consensus Protein kinase C inhibitor-like protein 98.16
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 96.97
PF02744166 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transf 96.54
KOG1595528 consensus CCCH-type Zn-finger protein [General fun 93.56
KOG2958354 consensus Galactose-1-phosphate uridylyltransferas 93.48
COG4360298 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetr 93.43
cd00608329 GalT Galactose-1-phosphate uridyl transferase (Gal 92.09
PLN03103403 GDP-L-galactose-hexose-1-phosphate guanyltransfera 92.01
PF0064227 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si 90.18
PLN02643336 ADP-glucose phosphorylase 86.62
smart0035627 ZnF_C3H1 zinc finger. 86.36
COG1085338 GalT Galactose-1-phosphate uridylyltransferase [En 85.88
KOG2863456 consensus RNA lariat debranching enzyme [RNA proce 84.0
KOG0562184 consensus Predicted hydrolase (HIT family) [Genera 82.39
KOG2720431 consensus Predicted hydrolase (HIT family) [Genera 81.85
TIGR00209347 galT_1 galactose-1-phosphate uridylyltransferase, 80.53
PRK11720346 galactose-1-phosphate uridylyltransferase; Provisi 80.31
>KOG2476 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-96  Score=736.01  Aligned_cols=355  Identities=45%  Similarity=0.773  Sum_probs=309.4

Q ss_pred             cCCCCCCchHHHHHHHhcCCCeEeecCCCceeecCCCCCC-----CCCccceeeccccCCCcccceeeEecCCCcccCCc
Q 014199            5 ISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV-----DAVHVTRFLGLAPVGNKEKQKFIHALSPTPAATMS   79 (429)
Q Consensus         5 ~~~~~~gs~~i~~l~~~lkPRYHFa~~~~~fyER~Py~~~-----~~~~vTRFi~La~~gn~~K~Kw~yAf~i~p~~~~~   79 (429)
                      ..+...||.+|++||+.||||||||+++|+||||+||+|+     .++|+||||+||+|||++|+||+|||||.|+..|.
T Consensus       169 ~~~~~~gs~lvs~La~~lkPRYHFa~~~~v~YErePyrn~~~~~~~~~h~TRFI~LA~vGN~ek~K~lYAfs~~P~~~~~  248 (528)
T KOG2476|consen  169 ESKRLCGSELVSELAAELKPRYHFAGSDGVFYEREPYRNHAALNEEAGHVTRFIALAKVGNPEKQKWLYAFSLKPMGTME  248 (528)
T ss_pred             cccCCcchHHHHHHHHhcCcceEeccCCCceeecccccchhhhcccccceeeeeehhhcCCccccceeeeecccccccch
Confidence            3677889999999999999999999999999999999997     37899999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCCCCccccCCCCcccccCCCCCCCCCCCccccccccccccCCCCCCCCcceeeeccCCCCCCCccccc
Q 014199           80 AADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGGDGDKMCFKFIYSGSCPRGEKCNFR  159 (429)
Q Consensus        80 ~~~l~~~p~~~T~~Py~~~~~~~~~~~~~kr~~~~~~~~~~~r~~~~~~~~r~~~~~~~~~c~~~~~~g~~~~g~~~~~~  159 (429)
                      +.+|.+.|+|+|+|||....  .. ..+.||..++  ++.+++||+++++.+                            
T Consensus       249 ~~el~a~Ppn~~~~Py~~~d--~~-~qs~kr~~~s--~~~q~ffd~~~~~~~----------------------------  295 (528)
T KOG2476|consen  249 LAELTAKPPNLIPNPYNLED--VA-IQSNKRPNSS--ESTQYFFDMDKQQLS----------------------------  295 (528)
T ss_pred             hhhcccCCCccCCCCcchhh--hh-hhhccCCCCC--ccceeeeccCccccc----------------------------
Confidence            99999999999999996222  11 1345666543  234445998632221                            


Q ss_pred             cCchhhhhhhcccchhhhhccCcCCCCccccCCCCCCCccccccCCcccccCCCCCCcccCCCCCCCcceEEEECCeEEE
Q 014199          160 HDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSKECWFCLSSPSVESHLIVSVGEYYYC  239 (429)
Q Consensus       160 ~~~~~~~~~~~~~c~~f~~~g~~~~Gr~~~~~h~~~~~~~~~~~~~~~~~~~~~~~C~FC~~~~~~~~hlIvs~g~~~yl  239 (429)
                                            +.+||++..+++.     +++|.    +.+.++.||||++||++++||||+||+++|+
T Consensus       296 ----------------------~~~gr~~h~~~~~-----kgpR~----p~~~pg~CwFCLSnP~vEkHLIVsIG~~~Yl  344 (528)
T KOG2476|consen  296 ----------------------KMNGRESHSDKSE-----KGPRK----PKIPPGSCWFCLSNPNVEKHLIVSIGNHFYL  344 (528)
T ss_pred             ----------------------cCCcccccccccc-----cCCCC----CCCCCCceEEEecCCChhhheEEEecceeEE
Confidence                                  1223333222211     11121    3356889999999999999999999999999


Q ss_pred             EecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEeecCCCCceeEEEEEecCcchHHHH
Q 014199          240 ALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEWLSKRGTHANLQAVPIPTSKAAAV  319 (429)
Q Consensus       240 ~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~~~g~~~v~~E~~~~~~~H~HihvVPvp~~~~~~~  319 (429)
                      +||||||+.||+|||||+|++++..|++|+++||.+|+.+|++||++.|..+|+||+.+.++.|+|+|+||||+.....+
T Consensus       345 AlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~~~vvfE~~~~rs~Hlq~Qvipvpks~s~~i  424 (528)
T KOG2476|consen  345 ALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGKDAVVFERQSYRSVHLQLQVIPVPKSSSRQI  424 (528)
T ss_pred             eecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeecccceeeEEEEEeccchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999668899999999999999999999


Q ss_pred             HHHHHHHHHHcCCcceeccCCCCcchhhhHhhhccCCCCeEEEEeCCCcEEEEEeccCCccCcchHHHHHHHhcCCCccc
Q 014199          320 QDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVLAGLLNIADKA  399 (429)
Q Consensus       320 ~~~F~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~Yf~v~~~~g~~~~~~i~~~~~f~~qFgReVla~lL~lp~r~  399 (429)
                      +..|..+|++++++|++.+...      .|.+..+.+.+||+||+|+|+.|+|++..+++||+||||||||+|||||+|+
T Consensus       425 k~~F~~~A~eag~ef~t~~~~~------s~~~~~n~~l~yF~vELPdg~~L~hr~~k~e~FplqFGReVlAslLn~pdrv  498 (528)
T KOG2476|consen  425 KSSFETAAEEAGLEFETYDSHS------SIKNQSNNGLPYFVVELPDGSILIHRLMKNETFPLQFGREVLASLLNLPDRV  498 (528)
T ss_pred             hHHHHHHHHHcCceEEecCcch------hhhhhhccCCceEEEECCCCCeehhhhhccCccchhhhHHHHHHHcCCcccc
Confidence            9999999999999999876543      2566666788999999999999999999999999999999999999999999


Q ss_pred             ccccccCChHHHHHHHHHHHhcCccCCCCC
Q 014199          400 DWRNCMLGKEEETKMVEDFKKRFEAFDPNQ  429 (429)
Q Consensus       400 ~Wr~c~~~~eeE~~~~~~Fk~~fk~fD~~~  429 (429)
                      |||+|.+++|||++.+++||++|++||||+
T Consensus       499 dWr~C~~tkeeE~~~ae~Fkk~F~pyDft~  528 (528)
T KOG2476|consen  499 DWRTCLQTKEEEVALAEKFKKAFKPYDFTL  528 (528)
T ss_pred             cHHHhhhhhHHHHHHHHHHHHhccCCCCCC
Confidence            999999999999999999999999999996

>KOG2477 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues Back     alignment and domain information
>PRK10687 purine nucleoside phosphoramidase; Provisional Back     alignment and domain information
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only] Back     alignment and domain information
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases Back     alignment and domain information
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides Back     alignment and domain information
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain Back     alignment and domain information
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides Back     alignment and domain information
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms [] Back     alignment and domain information
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome Back     alignment and domain information
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms] Back     alignment and domain information
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only] Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B Back     alignment and domain information
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain Back     alignment and domain information
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only] Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism Back     alignment and domain information
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism] Back     alignment and domain information
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate Back     alignment and domain information
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional Back     alignment and domain information
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN02643 ADP-glucose phosphorylase Back     alignment and domain information
>smart00356 ZnF_C3H1 zinc finger Back     alignment and domain information
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion] Back     alignment and domain information
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification] Back     alignment and domain information
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only] Back     alignment and domain information
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1 Back     alignment and domain information
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 6e-12
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 6e-09
2rhk_C72 Cleavage and polyadenylation specificity factor su 9e-09
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 5e-08
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 4e-06
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 1e-05
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77 Back     alignment and structure
 Score = 60.3 bits (146), Expect = 6e-12
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 139 KMCFKFIYSGSCPRGEKCNFRHDTDA------REQCLRGVCLDFIIKGKCEKGPECSYKH 192
           ++C  +  SG C  G KC F H            +    +C  F ++G+C  G  C + H
Sbjct: 13  ELCRTYSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIH 72

Query: 193 SLQND 197
           +   D
Sbjct: 73  NPTED 77
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72 Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98 Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Length = 218 Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
3n1s_A119 HIT-like protein HINT; histidine triad nucleotide 99.72
3o0m_A149 HIT family protein; ssgcid, NIH, niaid, SBRI, UW, 99.72
3imi_A147 HIT family protein; structural genomics, infectiou 99.71
3lb5_A161 HIT-like protein involved in cell-cycle regulatio; 99.71
1y23_A145 HIT, histidine triad protein; HIT protein, PKCI-1, 99.71
3p0t_A138 Uncharacterized protein; ssgcid, HIT-like protein, 99.7
4egu_A119 Histidine triad (HIT) protein; structural genomics 99.7
3oj7_A117 Putative histidine triad family protein; hydrolase 99.69
3l7x_A173 SMU.412C, putative HIT-like protein involved in ce 99.69
3r6f_A135 HIT family protein; structural genomics, seattle s 99.68
2eo4_A149 150AA long hypothetical histidine triad nucleotid 99.68
3o1c_A126 Histidine triad nucleotide-binding protein 1; hydr 99.67
2oik_A154 Histidine triad (HIT) protein; HIT-like fold, stru 99.67
3ano_A218 AP-4-A phosphorylase; diadenosine polyphosphate, H 99.67
3ksv_A149 Uncharacterized protein; HIT family, structural ge 99.66
1xqu_A147 HIT family hydrolase; protein STRU initiative, PSI 99.64
1fit_A147 FragIle histidine protein; FHIT, fragIle histidine 99.52
1ems_A440 Nitfhit, NIT-fragIle histidine triad fusion protei 99.44
3ohe_A137 Histidine triad (HIT) protein; structural genomics 99.42
3i24_A149 HIT family hydrolase; structural genomics, PSI-2, 99.4
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 99.26
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 99.24
3nrd_A135 Histidine triad (HIT) protein; structural genomics 99.2
3i4s_A149 Histidine triad protein; hydrolase, phosphatase, H 99.08
3sp4_A204 Aprataxin-like protein; HIT domain, zinc finger, D 98.67
1z84_A351 Galactose-1-phosphate uridyl transferase-like prot 97.76
1m9o_A77 Tristetraproline; Cys3His type zinc finger, metal 96.94
2cqe_A98 KIAA1064 protein; CCCH zinc-finger, structural gen 96.03
3d2q_A70 Muscleblind-like protein 1; tandem zinc finger dom 95.97
3bl9_A301 Scavenger mRNA-decapping enzyme DCPS; ligand compl 95.01
2d9n_A77 Cleavage and polyadenylation specificity factor, 3 95.0
3d2n_A83 Muscleblind-like protein 1; tandem zinc finger dom 94.96
1vlr_A350 MRNA decapping enzyme; 16740816, structural genomi 94.58
2e5s_A98 Otthump00000018578; ZF-CCCHX2 domain, muscleblind- 93.95
2rhk_C72 Cleavage and polyadenylation specificity factor su 93.87
2rpp_A89 Muscleblind-like protein 2; zinc finger domain, C3 93.78
1gup_A348 Galactose-1-phosphate uridylyltransferase; nucleot 90.01
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A* Back     alignment and structure
Probab=99.72  E-value=4.5e-18  Score=145.93  Aligned_cols=99  Identities=18%  Similarity=0.176  Sum_probs=77.8

Q ss_pred             CCCCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH-----hc
Q 014199          213 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK-----NQ  287 (429)
Q Consensus       213 ~~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~~~-----~~  287 (429)
                      .++|+||.+..+.....||++++.+++++|..|.++||+||||++|+.++.+|+++++.++..+...+.++.+     ..
T Consensus         2 ~~~CiFC~I~~ge~~~~iv~ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e~~~l~~l~~~~~~v~~~~~~~~~   81 (119)
T 3n1s_A            2 AEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED   81 (119)
T ss_dssp             CCCCHHHHHHTTSSCCCEEEECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGGHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred             CCCChhhhhhcCCCcCCEEEECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            3579999975443345689999999999999999999999999999999999999976666665554444443     35


Q ss_pred             CCceEEEe--ecCCCCceeEEEEEec
Q 014199          288 GKEAVFFE--WLSKRGTHANLQAVPI  311 (429)
Q Consensus       288 g~~~v~~E--~~~~~~~H~HihvVPv  311 (429)
                      |++++++.  .+++.+.|+|+||||+
T Consensus        82 g~ni~~n~g~~agq~V~HlH~Hiipr  107 (119)
T 3n1s_A           82 GYRLIMNTNRHGGQEVYHIHMHLLGG  107 (119)
T ss_dssp             CEEEEEEEHHHHTCCSSSCCEEEEES
T ss_pred             CeEEEEeCCCCcCCCcCEEEEEEeCC
Confidence            66777665  2445578999999996
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str} Back     alignment and structure
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1 Back     alignment and structure
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae} Back     alignment and structure
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1 Back     alignment and structure
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp} Back     alignment and structure
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile} Back     alignment and structure
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A* Back     alignment and structure
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans} Back     alignment and structure
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi} Back     alignment and structure
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A Back     alignment and structure
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1 Back     alignment and structure
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis} Back     alignment and structure
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0 Back     alignment and structure
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1 Back     alignment and structure
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A* Back     alignment and structure
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Back     alignment and structure
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei} Back     alignment and structure
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114} Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure
>3nrd_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.06A {Sinorhizobium meliloti} Back     alignment and structure
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum} Back     alignment and structure
>3sp4_A Aprataxin-like protein; HIT domain, zinc finger, DNA-binding protein, DNA deadenylas hydrolase; 1.80A {Schizosaccharomyces pombe} PDB: 3spd_A* 3spl_A* 3szq_A* Back     alignment and structure
>1z84_A Galactose-1-phosphate uridyl transferase-like protein; GALT, zinc, AMP, structural genomics, protein structure initiative, CESG; HET: AMP; 1.83A {Arabidopsis thaliana} SCOP: d.13.1.2 d.13.1.2 PDB: 1zwj_A 2q4h_A* 2q4l_A 2h39_A* Back     alignment and structure
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Back     alignment and structure
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Back     alignment and structure
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Back     alignment and structure
>3bl9_A Scavenger mRNA-decapping enzyme DCPS; ligand complex, cytoplasm, hydrolase, nonsense-mediated mRNA decay, nucleus, polymorphism, structural genomics; HET: DD2; 1.80A {Homo sapiens} SCOP: d.13.1.3 d.246.1.1 PDB: 3bl7_A* 3bla_A* Back     alignment and structure
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens} Back     alignment and structure
>1vlr_A MRNA decapping enzyme; 16740816, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.83A {Mus musculus} SCOP: d.13.1.3 d.246.1.1 PDB: 1xmm_B* 1xml_B 1st0_B* 1st4_B* Back     alignment and structure
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Back     alignment and structure
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Back     alignment and structure
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 429
d1guqa2171 d.13.1.2 (A:178-348) Galactose-1-phosphate uridyly 5e-05
d1rgoa234 g.66.1.1 (A:187-220) Butyrate response factor 2 (T 1e-04
d1rgoa136 g.66.1.1 (A:151-186) Butyrate response factor 2 (T 2e-04
d1m9oa_40 g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475 2e-04
d1z84a2156 d.13.1.2 (A:196-351) Galactose-1-phosphate uridyly 3e-04
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: Hexose-1-phosphate uridylyltransferase
domain: Galactose-1-phosphate uridylyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 8/102 (7%)

Query: 197 DDSQRTHRSENASANRSKECWFC--LSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVI 254
           D  Q+ + +E       K       +     +    V   E++   +P         L++
Sbjct: 6   DRLQKEYFAEQ------KSPMLVDYVQRELADGSRTVVETEHWLAVVPYWAAWPFETLLL 59

Query: 255 PVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFEW 296
           P  HV      +     +L      L   Y N  + +  +  
Sbjct: 60  PKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPYSM 101
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34 Back     information, alignment and structure
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36 Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40 Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 156 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
d1y23a_139 Hit {Bacillus subtilis [TaxId: 1423]} 99.75
d1kpfa_111 Protein kinase C inhibitor-1, PKCI-1 {Human (Homo 99.73
d1xqua_113 Putative hydrolase {Clostridium thermocellum [TaxI 99.71
d2oika1139 Histidine triad protein Mfla2506 {Methylobacillus 99.69
d1emsa1160 NIT-FHIT fusion protein, C-terminal domain {Nemato 99.66
d1fita_146 FHIT (fragile histidine triad protein) {Human (Hom 99.55
d1z84a2156 Galactose-1-phosphate uridylyltransferase {Thale c 99.42
d1guqa2171 Galactose-1-phosphate uridylyltransferase {Escheri 99.39
d1vlra1192 mRNA decapping enzyme DcpS C-terminal domain {Mous 97.46
d1z84a1173 Galactose-1-phosphate uridylyltransferase {Thale c 96.85
d1guqa1176 Galactose-1-phosphate uridylyltransferase {Escheri 94.15
d2cqea156 Zinc finger CCCH domain-containing protein C19orf7 85.16
d1m9oa_40 Tristetraproline (ttp, tis11, nup475) {Mouse (Mus 82.61
d1rgoa234 Butyrate response factor 2 (Tis11D) {Human (Homo s 80.74
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: HIT-like
superfamily: HIT-like
family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins
domain: Hit
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=2.4e-19  Score=155.35  Aligned_cols=99  Identities=18%  Similarity=0.204  Sum_probs=80.0

Q ss_pred             CCCcccCCCCCCCcceEEEECCeEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHH----HHhcCC
Q 014199          214 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMY----YKNQGK  289 (429)
Q Consensus       214 ~~C~FC~~~~~~~~hlIvs~g~~~yl~l~kgPl~~GH~LIIP~~H~~s~~~l~~e~~~Ei~~~~~~L~~~----~~~~g~  289 (429)
                      ++|+||.+..+.....+|++++++++++++.|.++||+||||++|+.++.+|+++++.++....+.+.++    +...|+
T Consensus         1 e~CiFC~I~~~e~p~~~i~ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~l~~~~~~~~~~l~~~~~~~g~   80 (139)
T d1y23a_           1 ENCIFCKIIAGDIPSAKVYEDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQYFHAVPKIARAIRDEFEPIGL   80 (139)
T ss_dssp             CCCHHHHHHHTSSCCCEEEECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTTTTHHHHHHHHHHHHHCCSEE
T ss_pred             CcCccCccccCCCCccEEEECCCEEEEecCCCCCCcEEEEEEecccccccccchHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence            5799998764433445789999999999999999999999999999999999999999988765555544    445677


Q ss_pred             ceEEEe--ecCCCCceeEEEEEecC
Q 014199          290 EAVFFE--WLSKRGTHANLQAVPIP  312 (429)
Q Consensus       290 ~~v~~E--~~~~~~~H~HihvVPvp  312 (429)
                      +++++.  .+++.++|+|+||||+-
T Consensus        81 ~i~~n~g~~agq~v~H~H~HviPR~  105 (139)
T d1y23a_          81 NTLNNNGEKAGQSVFHYHMHIIPRY  105 (139)
T ss_dssp             EEEEEESGGGTCCSSSCCEEEEEEC
T ss_pred             EEEeCCCccccEecCEEEEEEEccc
Confidence            777665  23445789999999973
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]} Back     information, alignment and structure
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1z84a1 d.13.1.2 (A:23-195) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure