Citrus Sinensis ID: 014200

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWNL
Secondary Structure (PSIPRED)
cHHHHHHcccccEEEccccccccccHHHHHccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHHccccccEEcccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHcccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccHHHHHcccccccccccccccHHHHHHHHHHHcccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccccccccccccccccccccccHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHcHccccEEEccccccccccHHHHHccccccccHHHHccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHccHcccEEEccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEccccccccccHHHHcccccEEEEccccccccccHHHcccccccEEEccccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHccccccccEEEccccccccccHHHHccccccEEEccccccccccHHHcccccccccHHHHcccccccEEEccccccccccHHHHccccccEEEccccccccccHHHHcccccEEEEEEccccccccccHHHHcccc
Coil and Loop (DISEMBL)
MDRILKAARtsgslnlsnrslrdvpnevyknfdeagegdkwwEAVDLQKLILAHNNIEKLKEDlrnlplltVLNVSHNKLSELPAAIGELHMlksldvsfnsimkipdeigSATALVkfdcssnqlkelpsslgrclnlsdfkasnncitslpedladcskmskldvegnkltVLSNNLIASWTMLTELIASKnllngmpetIGSLSRLIRLDLhqnrilsipssisgcCSLAefymgnnalsALPAElgklsklgtldlhSNQLKEYCVEACQLRLSVLDlsnnslsglppeigkMTTLRKLLLtgnplrtlrsslvngptpALLKYLRSrlpenedseasttkEDLITMATRLSVTSKELslegmnlsaipseiweageitkldlsrnsiqelppelsscaslQVKFSDlvtnkescisgcylywnl
Flexible Loop (DISEMBL)
mdrilkaartsgslnlsnrslrdvpnEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRtlrsslvngptPALLKYLRsrlpenedseasttkedlitMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLvtnkescisgcylywnl
Low Complexity Region (SEG)
MDRILKAARTSGslnlsnrslrDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQlrlsvldlsnnslsglPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWNL
Disordered region (IsUnstruct)
***************************VYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL*************************************MNLSAIPSEIWEAGEITKLDL************SSCASLQVKFSDLVTNKESCISGCYLYWN*
Disordered Region (DISOPRED)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE*****TTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWNL
Disordered Region (DISEMBL)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL**********TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWNL
Disordered Region (DISPRO)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDxxxxxxxxxxxxxxxxxxxxxPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWNL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	429	2.2.26 [Sep-21-2011]
Q5ZLN0	603	Leucine-rich repeat-conta	yes	no	0.911	0.648	0.364	5e-58
Q6GPJ5	605	Leucine-rich repeat-conta	N/A	no	0.911	0.646	0.358	4e-56
Q5M8G4	605	Leucine-rich repeat-conta	yes	no	0.911	0.646	0.367	1e-54
Q5RFE9	602	Leucine-rich repeat-conta	yes	no	0.965	0.687	0.353	9e-53
Q9H9A6	602	Leucine-rich repeat-conta	yes	no	0.965	0.687	0.353	2e-52
Q7SXW3	601	Leucine-rich repeat-conta	yes	no	0.953	0.680	0.330	3e-52
Q4R3P6	602	Leucine-rich repeat-conta	N/A	no	0.965	0.687	0.350	2e-51
Q9CRC8	602	Leucine-rich repeat-conta	yes	no	0.965	0.687	0.339	1e-47
Q5F4C4	529	Leucine-rich repeat prote	no	no	0.780	0.633	0.309	2e-35
Q8AVI4	577	Leucine-rich repeat prote	N/A	no	0.853	0.634	0.315	4e-34

>sp|Q5ZLN0|LRC40_CHICK Leucine-rich repeat-containing protein 40 OS=Gallus gallus GN=LRRC40 PE=2 SV=1

 Score =  225 bits (574), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 153/420 (36%), Positives = 237/420 (56%), Gaps = 29/420 (6%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +++AAR SG LNL+ R L +VP  V++ N D   EA      G  D+WWE  DL KLILA
Sbjct: 31  LIRAARKSGQLNLAGRGLGEVPQHVWRINLDTPEEAHQNLSFGAADRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N +  L ED+R LP LTVL+V  N+L+ LP+A+G+L  L+ LDVS N +  IP+E+   
Sbjct: 91  SNQLRCLSEDVRLLPALTVLDVHDNQLTSLPSALGQLENLQKLDVSHNKLKSIPEELLQL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           + L       N+L  LP   G+ ++L +   SNN +T +P+  A    + +L++  N+L 
Sbjct: 151 SHLKGLLLQHNELSHLPDGFGQLVSLEELDLSNNHLTDIPKSFALLINLVRLNLACNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L  + I++   L +L  +KN L  +P  + S++ L +L L +N++ S+P  +  C  L 
Sbjct: 211 DLPAD-ISAMKSLRQLDCTKNYLESVPSELASMASLEQLYLRKNKLRSLP-ELPSCKLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLP 291
           E + G N +  L AE L  L+ L  L+L  N++K    E   L +L  LDL+NN +S LP
Sbjct: 269 ELHAGENQIEILNAENLKHLNSLSVLELRDNKIKSVPDEITLLQKLERLDLANNDISRLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G ++ L+ L L GNPLRT+R  L+   T  LLKYLRSR+   +D +AS  +E  +T 
Sbjct: 329 YTLGNLSQLKFLALEGNPLRTIRRDLLQKGTQELLKYLRSRI---QDDKASPNEEPPVTA 385

Query: 352 AT-----RLSV----TSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELPPEL 399
            T     R+++    T K L      ++ IP +++ A     +T ++ S+N +  +PP +
Sbjct: 386 MTLPSESRINMHAITTLKLLDYSEKQVAVIPDDVFSAVRSNPVTSVNFSKNQLTAIPPRI 445

Gallus gallus (taxid: 9031)

>sp|Q6GPJ5|LRC40_XENLA Leucine-rich repeat-containing protein 40 OS=Xenopus laevis GN=lrrc40 PE=2 SV=1

 Score =  219 bits (558), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 149/416 (35%), Positives = 221/416 (53%), Gaps = 25/416 (6%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L +VP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTEVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N+++ LP AI EL  L+ L++S N I ++P+E+   
Sbjct: 91  SNKLQALSEDISLLPALVVLDIHDNQIASLPCAIRELTNLQKLNISHNKIKQLPNELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L  F    NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSFLLQHNQLEELPDSIGHLSILEELDVSNNCLRSVSSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLRQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L+ L  LDLSNN +  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPKEISLLKGLERLDLSNNDIGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL--PENEDSEASTTKEDLI 349
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R+  P+    EA+   +  +
Sbjct: 329 DTLGSLPNLKSLQLDGNPLRGIRRDILNKGTQELLKYLKGRVQTPDMTTQEAANPPDTAM 388

Query: 350 TMAT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELP 396
           T+ +         +T K L       S IP  ++ A     IT ++ S+N + E+P
Sbjct: 389 TLPSDSVINAHAIMTLKTLEYCEKQASLIPEAVFNAAASSPITTVNFSKNQLTEVP 444

Xenopus laevis (taxid: 8355)

>sp|Q5M8G4|LRC40_XENTR Leucine-rich repeat-containing protein 40 OS=Xenopus tropicalis GN=lrrc40 PE=2 SV=1

 Score =  214 bits (545), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 153/416 (36%), Positives = 218/416 (52%), Gaps = 25/416 (6%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---------EAGEGDKWWEAVDLQKLILA 53
           ++KAAR SG LNLS R L DVP  V++ N D         + G  D+WWE  DL KLILA
Sbjct: 31  LIKAARKSGQLNLSARGLTDVPVSVWRINVDTPPEAHQNVDFGGSDRWWEQTDLTKLILA 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L ED+  LP L VL++  N++  LP AI EL  L+ L++S N I ++P E+   
Sbjct: 91  SNKLQLLSEDISLLPALVVLDIHDNQIVSLPCAIKELTNLQKLNISHNKIKQLPKELQHL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       NQL+ELP S+G    L +   SNNC+ S+   +   + + K ++  NKLT
Sbjct: 151 QNLKSLLLQHNQLEELPDSIGHLSILEELDVSNNCLRSISSSVGQLTGLVKFNLSSNKLT 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L +L  + NLL  +P ++  +  L +L L QN++  +P  +     L 
Sbjct: 211 ALPTE-IGKMKNLKQLDCTSNLLENVPASVAGMESLEQLYLRQNKLTYLP-ELPFLTKLK 268

Query: 234 EFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++GNN +  L P  L  LS L  L+L  N+LK    E   L  L  LDLSNN L  LP
Sbjct: 269 ELHVGNNQIQTLGPEHLQNLSSLSVLELRYNKLKVLPEEISLLNGLERLDLSNNDLGSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR--LPE---NEDSEASTTKE 346
             +G +  L+ L L GNPLR +R  ++N  T  LLKYL+ R  +P+    ED  ++ T  
Sbjct: 329 CTLGSLPNLKSLQLEGNPLRGIRRDILNKGTQELLKYLKGRVQVPDVKTQEDENSTATAM 388

Query: 347 DLIT---MATRLSVTSKELSLEGMNLSAIPSEIWEA---GEITKLDLSRNSIQELP 396
            L +   + T   VT K L       S IP  ++ A     IT ++ S+N + E+P
Sbjct: 389 TLPSESVVNTHAIVTLKTLEYCEKQASLIPEAVFNATGSSFITTVNFSKNQLTEVP 444

Xenopus tropicalis (taxid: 8364)

>sp|Q5RFE9|LRC40_PONAB Leucine-rich repeat-containing protein 40 OS=Pongo abelii GN=LRRC40 PE=2 SV=1

 Score =  207 bits (528), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 238/439 (54%), Gaps = 25/439 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELQNLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQFSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 AT------RLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +      R  +T K L       + IP E+++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIRAIITLKILDYSDKQATLIPDEVFDAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQVKFSDLVTNKESCIS 421
             + V   +L  NK S IS
Sbjct: 448 KEM-VSDVNLSFNKLSFIS 465

Pongo abelii (taxid: 9601)

>sp|Q9H9A6|LRC40_HUMAN Leucine-rich repeat-containing protein 40 OS=Homo sapiens GN=LRRC40 PE=1 SV=1

 Score =  207 bits (526), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 237/439 (53%), Gaps = 25/439 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAIRELENLQKLNVSHNKLKILPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNHLTTVPASFSSLSSLVRLNLSSNELK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   LR L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLRSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  +++  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGPSQSESATETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E+++A +   +T ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFDAVKSNIVTSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQVKFSDLVTNKESCIS 421
             + V   DL  NK S IS
Sbjct: 448 KEM-VSDVDLSFNKLSFIS 465

Homo sapiens (taxid: 9606)

>sp|Q7SXW3|LRC40_DANRE Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1

 Score =  206 bits (523), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 144/436 (33%), Positives = 229/436 (52%), Gaps = 27/436 (6%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFDEAGEG---------DKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R L +VP  V++ N D   E          D+WWE  DL KL+L+
Sbjct: 29  LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct: 89  SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
           T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct: 149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct: 209 SLPPA-ISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLP-ELPCCKTLK 266

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E + GNN +  L AE L  L+ L  L+L  N++K    E   L+ L  LDL+NN +S LP
Sbjct: 267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct: 327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPEL--- 399
            ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P  +   
Sbjct: 387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVPHRIVDL 446

Query: 400 -SSCASLQVKFSDLVT 414
             S A + + F+ L T
Sbjct: 447 KDSLADINLGFNKLTT 462

Danio rerio (taxid: 7955)

>sp|Q4R3P6|LRC40_MACFA Leucine-rich repeat-containing protein 40 OS=Macaca fascicularis GN=LRRC40 PE=2 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 235/439 (53%), Gaps = 25/439 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
           +LKAAR SG LNLS R+L +VP  V++ N D   EA      G  ++WWE  DL KLI++
Sbjct: 31  LLKAARKSGQLNLSGRNLSEVPQCVWRINVDIPEEANQNLSFGATERWWEQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
           +N ++ L +DLR LP LTVL++  N+L+ LP+A+ EL  L+ L+VS N +   P+EI + 
Sbjct: 91  NNKLQSLTDDLRLLPALTVLDIHDNQLTSLPSAMRELENLQKLNVSHNKLKIFPEEITNL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +     +  NL D   SNN +T++P   +  S + +L++  N+L 
Sbjct: 151 RNLKCLYLQHNELTCISEGFEQLSNLEDLDLSNNRLTTVPASFSSLSSLVRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I     L  L  + NLL  +P  +  +  L  L L +N++  +P     C  L 
Sbjct: 211 SLPAE-INRMKRLKHLDCNSNLLETIPPELAGMESLELLYLRRNKLRFLP-EFPSCSLLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++G N +  L AE L  L+ +  LDL  N+LK    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHVGENQIEMLEAEHLKHLNSILVLDLRDNKLKSVPDEIILLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++N  T  +LKYLRS++ ++  S++ +  E  +T+
Sbjct: 329 YSLGNL-HLKFLALEGNPLRTIRREIINKGTQEVLKYLRSKIKDDGPSQSESAAETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP E++ A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSESRVNIHAIITLKILDYSDKQATLIPDEVFNAVKSNIITSINFSKNQLCEIPKRMVEL 447

Query: 403 ASLQVKFSDLVTNKESCIS 421
             + V   +L  NK S IS
Sbjct: 448 KEM-VSDVNLSFNKLSFIS 465

Macaca fascicularis (taxid: 9541)

>sp|Q9CRC8|LRC40_MOUSE Leucine-rich repeat-containing protein 40 OS=Mus musculus GN=Lrrc40 PE=2 SV=2

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/439 (33%), Positives = 234/439 (53%), Gaps = 25/439 (5%)

Query: 4   ILKAARTSGSLNLSNRSLRDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
           +LKAAR+SG LNL+ R+L +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct: 31  LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query: 54  HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
            N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct: 91  SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct: 151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P     C  L 
Sbjct: 211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLP-EFPSCRQLK 268

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 291
           E ++  N +  L AE L  L  +  LDL  N+L+    E   L+ L  LDLSNN +S LP
Sbjct: 269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query: 292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
             +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct: 329 CSLGNL-HLKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query: 352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
            +   V      T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct: 388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query: 403 ASLQVKFSDLVTNKESCIS 421
             + +   +L  NK S IS
Sbjct: 448 KEMVLDI-NLSFNKLSFIS 465

Mus musculus (taxid: 10090)

>sp|Q5F4C4|SHOC2_CHICK Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/391 (30%), Positives = 192/391 (49%), Gaps = 56/391 (14%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P+ VY+                L  L L  N I  +++D++ L  LT+L
Sbjct: 174 LDLRHNKLREIPSVVYR-------------LTSLATLYLRFNRITTVEKDIKTLSKLTML 220

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+ +LPA IGEL  L +LDV+ N +  +P+EIGS T +   D   N+L +LP ++
Sbjct: 221 SIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPEEIGSCTQITNLDLQHNELLDLPETI 280

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +LS      N ++++P+ LA CS++ +L++E N ++ L   L++S   LT L  ++
Sbjct: 281 GNLSSLSRLGLRYNRLSAIPKSLAKCSELDELNLENNNISTLPEGLLSSLVKLTSLTLAR 340

Query: 194 NLLNGMPETIG---SLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 341 NCFQSYP--VGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 398

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   +   L  L VL LSNN L  LP  IG +  LR+L L  N
Sbjct: 399 GTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGIGNLRKLRELDLEEN 458

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L         P  + YL+                DL           ++L L    
Sbjct: 459 KLESL---------PNEIAYLK----------------DL-----------QKLVLTNNQ 482

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399
           L+ +P  I     +T L L  N +  LP E+
Sbjct: 483 LTTLPRGIGHLTNLTHLGLGENLLTHLPEEI 513

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes.

Gallus gallus (taxid: 9031)

>sp|Q8AVI4|SHOC2_XENLA Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1

 Score =  146 bits (368), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/400 (31%), Positives = 202/400 (50%), Gaps = 34/400 (8%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L+L +  LR++P  VY+                L  L L  N I  +++DL+ LP LT+L
Sbjct: 169 LDLRHNKLREIPPVVYR-------------LSSLTTLFLRFNRITAVEKDLKMLPKLTML 215

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
           ++  NK+  LPA IGEL  L +LDV+ N +  +P EIG+ T +   D   N+L +LP ++
Sbjct: 216 SIRENKIKHLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTI 275

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK 193
           G   +LS      N ++++P  L+ CS++ +L++E N ++ L   L++S   +  L  ++
Sbjct: 276 GNLSSLSRLGLRYNRLSAVPRSLSKCSELDELNLENNNISTLPEGLLSSLVKVNSLTLAR 335

Query: 194 NLLNGMPETIG---SLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL 249
           N     P  +G     S +  L++  NRI  IP  I S    L++  M +N L++LP + 
Sbjct: 336 NCFQSYP--VGGPSQFSSIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDF 393

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
           G  + +  L+L +NQL +   +   L  + VL LSNN L  LP  IG +  LR+L L  N
Sbjct: 394 GTWTSMVELNLATNQLTKIPEDVSGLVSIEVLILSNNLLKKLPHGIGNLRKLRELDLEEN 453

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
            L +L + +      A LK L+  +  N      TT    I   T L+     L L    
Sbjct: 454 KLESLPNEI------AYLKDLQKLVLTNNQ---LTTLPRGIGHLTNLT----HLGLGENL 500

Query: 369 LSAIPSEIWEAGEITKLDLSRN-SIQELPPELSSCASLQV 407
           L+ +P EI     + +L L+ N ++  LP EL+ C+ L +
Sbjct: 501 LTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSI 540

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
356549743	583	PREDICTED: leucine-rich repeat-containin	0.829	0.610	0.759	1e-175
356544024	586	PREDICTED: leucine-rich repeat-containin	0.946	0.692	0.764	1e-175
224114980	580	predicted protein [Populus trichocarpa]	0.937	0.693	0.784	1e-175
449431828	583	PREDICTED: leucine-rich repeat-containin	0.946	0.696	0.761	1e-172
255575336	571	leucine-rich repeat-containing protein,	0.944	0.709	0.754	1e-171
359493861	584	PREDICTED: leucine-rich repeat-containin	0.948	0.696	0.767	1e-171
225461397	588	PREDICTED: leucine-rich repeat-containin	0.946	0.690	0.751	1e-167
297830120	584	leucine-rich repeat family protein [Arab	0.946	0.695	0.734	1e-167
7021726	562	unknown protein [Arabidopsis thaliana]	0.946	0.722	0.732	1e-166
15795106	594	leucine-rich repeat protein; contains si	0.946	0.683	0.732	1e-166

>gi|356549743|ref|XP_003543250.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 309/407 (75%), Positives = 359/407 (88%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL ++P+EVY+N +  G  DKWWEA +LQKLILAHN+I  L
Sbjct: 1   MDRILKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGDDKWWEAAELQKLILAHNSIASL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLRNLP L+VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+KIP+EIGSA +LVK D
Sbjct: 61  KEDLRNLPFLSVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVKIPEEIGSAVSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+L ELPSSLGRCL LSD K SNN IT+LPEDLA+CSK+SKLD+EGN+LTV+S NLI
Sbjct: 121 CSNNRLTELPSSLGRCLELSDLKGSNNLITNLPEDLANCSKLSKLDMEGNRLTVMSENLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           +SWTMLTE  +SKNLLNG+P +IG LSRLIRLDLHQNRI +IPSSI GC SL E Y+GNN
Sbjct: 181 SSWTMLTEFNSSKNLLNGIPTSIGGLSRLIRLDLHQNRISAIPSSIIGCHSLTELYLGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTTL
Sbjct: 241 NISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 360
           RKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++ITMATRLS++SK
Sbjct: 301 RKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVITMATRLSISSK 360

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQV 407
           ELS+E + LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQ 
Sbjct: 361 ELSMEELGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQT 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544024|ref|XP_003540456.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Glycine max]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 311/407 (76%), Positives = 358/407 (87%), Gaps = 1/407 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGD-KWWEAVDLQKLILAHNNIEK 59
           MDR+LKAAR SGSLNLSNRSL ++P+EVY+N +  G GD KWWEAV+LQKLILAHN+I  
Sbjct: 1   MDRLLKAARASGSLNLSNRSLTEIPDEVYRNLEGLGGGDDKWWEAVELQKLILAHNSIAS 60

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF 119
           LKEDLRNLP L VLN+SHN LS+LPAAIGEL  LK LDVSFNSI+ IP+EIGSA +LVK 
Sbjct: 61  LKEDLRNLPFLAVLNLSHNSLSQLPAAIGELPQLKMLDVSFNSIVNIPEEIGSAMSLVKL 120

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+NQL ELPSSLGRCL LSD K SNN ITSLPEDLA+CSK+SKLD+EGNKLTV+S NL
Sbjct: 121 DCSNNQLTELPSSLGRCLELSDLKGSNNLITSLPEDLANCSKLSKLDMEGNKLTVISENL 180

Query: 180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 239
           I+SWTMLTE  ASKNLLNG+P +IG LSRLIR+ +HQNRI +IPSSI GC SL E Y+GN
Sbjct: 181 ISSWTMLTEFNASKNLLNGIPTSIGGLSRLIRVYVHQNRISAIPSSIIGCHSLTELYLGN 240

Query: 240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
           N +S LP E+G LS+LGTLDLHSNQLK+Y VEAC+L L VLDLSNNSLSGLPPE+GKMTT
Sbjct: 241 NNISTLPVEIGALSRLGTLDLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTT 300

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           LRKLLL+GNP+RTLRSSLV+GPTPALLK+LRSRL E+EDSEA TT +++I MATRLS+TS
Sbjct: 301 LRKLLLSGNPMRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEVIAMATRLSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
           KELS+EG+ LSA+PSE+WE+GE+ KL+LSRNSIQELP ELSSC SLQ
Sbjct: 361 KELSMEGLGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQ 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114980|ref|XP_002316909.1| predicted protein [Populus trichocarpa] gi|222859974|gb|EEE97521.1| predicted protein [Populus trichocarpa]

 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 316/403 (78%), Positives = 354/403 (87%), Gaps = 1/403 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAAR+SGSLNLSNRSL +VP+EVYK  D  GEG+KWWE V+LQKLILAHNNIE +
Sbjct: 1   MDRVLKAARSSGSLNLSNRSLSEVPDEVYKILDAVGEGEKWWENVELQKLILAHNNIEAI 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDL+NL  LTVLNVSHNKLS LPAAIGEL MLK LDVSFN I K+PDEIGSAT+LVKFD
Sbjct: 61  KEDLKNLSQLTVLNVSHNKLSALPAAIGELPMLKLLDVSFNLIQKVPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQL+ELPSSLG CL LSD KASNN ITSLPEDLA CSK++K+DVEGNKL VLS NL+
Sbjct: 121 CSSNQLRELPSSLGGCLALSDLKASNNSITSLPEDLARCSKLTKVDVEGNKLKVLSGNLM 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTE  ASKNLL+ +P+  GSLSRLIRLDLHQNRI +IP SI GCCSLAEFYMGNN
Sbjct: 181 ASWTMLTEFNASKNLLSDIPDNFGSLSRLIRLDLHQNRISTIPPSIMGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ALS LPAE+G LS+LGTLDLHSNQLKE   EAC+L+LS+LDLSNNSL+GLPPE+GKMTTL
Sbjct: 241 ALSTLPAEIGALSRLGTLDLHSNQLKEIPAEACKLQLSMLDLSNNSLTGLPPELGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLL GNPLRTLRSSLV+GPT  LL YLRSRL E EDS+A+T  K+DLI+M  RLSV+S
Sbjct: 301 RKLLLNGNPLRTLRSSLVSGPTATLLNYLRSRLSEGEDSKATTPAKKDLISMTARLSVSS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
           KELSL+G+ LSA+PSE+WE+ EI K+DLSRNSIQELP ELS C
Sbjct: 361 KELSLQGLGLSAVPSEVWESNEIVKVDLSRNSIQELPLELSLC 403

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431828|ref|XP_004133702.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus] gi|449478165|ref|XP_004155239.1| PREDICTED: leucine-rich repeat-containing protein 40-like [Cucumis sativus]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 310/407 (76%), Positives = 353/407 (86%), Gaps = 1/407 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAAR SGSLNLSNRSL DVP+EVY++ D     +KWWEAV+LQKLILAHNNI+ L
Sbjct: 1   MDRILKAARASGSLNLSNRSLSDVPSEVYRSLDAVQADEKWWEAVELQKLILAHNNIQLL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
            E+LRNL  L VLNVSHNKLSELPAAIGEL  LK LDVSFNS+M+IPDEIGSAT+LVKFD
Sbjct: 61  SEELRNLSSLAVLNVSHNKLSELPAAIGELPALKLLDVSFNSLMRIPDEIGSATSLVKFD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN L+ELP  LGRC +LSD KASNN I+SLP +LA+CSK++KLD+EGNKL V+S NLI
Sbjct: 121 CSSNHLQELPGGLGRCSDLSDLKASNNSISSLPVELANCSKLTKLDMEGNKLKVISKNLI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWT+LTEL ASKNLLN +PE IGSL RLIRL++ QN+I SIP SI  CC+LAE YMGNN
Sbjct: 181 ASWTLLTELNASKNLLNELPENIGSLLRLIRLNVFQNKISSIPPSIKDCCALAELYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           ++S LP E+G LS LGTLDLHSNQLKEY VEAC+L L VLDLSNNSLSGLPPEIGKMTTL
Sbjct: 241 SVSTLPVEIGALSHLGTLDLHSNQLKEYPVEACKLHLLVLDLSNNSLSGLPPEIGKMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE-DLITMATRLSVTS 359
           RKLLLTGNP+RTLRSSLV+GPTPALL++LRSRLPENE  EAS+T+  D+ITMA R+S+TS
Sbjct: 301 RKLLLTGNPIRTLRSSLVSGPTPALLRFLRSRLPENEGPEASSTQRGDVITMAARMSITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
           KELSLEG  LSA+PSE+WE+ E+ KLDLS+NS QELP ELSSC SLQ
Sbjct: 361 KELSLEGQGLSAVPSEVWESSELMKLDLSKNSFQELPVELSSCTSLQ 407

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575336|ref|XP_002528571.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223532015|gb|EEF33826.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 307/407 (75%), Positives = 356/407 (87%), Gaps = 2/407 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDR+LKAARTSGSLNLSNRSLR + +EVY++ D AGEG+KWWE V+LQKLILAHN+IE L
Sbjct: 1   MDRVLKAARTSGSLNLSNRSLRQL-HEVYRSSDAAGEGEKWWETVELQKLILAHNSIESL 59

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           KEDLR LP LTVLNVS+NKL+ LPAAIGEL +LKSLDVSFN I  +PDEIGSAT+LVKFD
Sbjct: 60  KEDLRLLPQLTVLNVSNNKLTALPAAIGELSLLKSLDVSFNMIQTVPDEIGSATSLVKFD 119

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSNQLKELP S+GRCL+LS+ K SNN ITS PEDLA C K++K+DVEGNKL   S NL+
Sbjct: 120 CSSNQLKELPGSVGRCLDLSELKVSNNLITSFPEDLAKCLKLTKVDVEGNKLQTFSENLM 179

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKNLL  +P+ +GSLSRLIRLD HQN+I SIP SI GCCSL EFYMGNN
Sbjct: 180 ASWTMLTELNASKNLLTCIPDNVGSLSRLIRLDFHQNKISSIPPSIKGCCSLLEFYMGNN 239

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS LPAE+G++S+L TLDLHSNQLKE+ VE C+L LSVLDLSNNSLSGLP EIG+MTTL
Sbjct: 240 LLSTLPAEIGEVSRLATLDLHSNQLKEFPVEGCKLHLSVLDLSNNSLSGLPLEIGRMTTL 299

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKLLLTGNPLRT+RSSLV+GPTPALL+YLRSRL E EDSEA+T  ++D+I MA+RLS+++
Sbjct: 300 RKLLLTGNPLRTIRSSLVSGPTPALLRYLRSRLSEGEDSEANTPPRKDVIAMASRLSIST 359

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
           KEL L G+ LSA+PSE+WE+GEI K+DLS+NSIQ+LP ELSSC SLQ
Sbjct: 360 KELFLVGLGLSAVPSEVWESGEIVKVDLSKNSIQKLPVELSSCVSLQ 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493861|ref|XP_003634682.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 2 [Vitis vinifera] gi|302143032|emb|CBI20327.3| unnamed protein product [Vitis vinifera]

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 313/408 (76%), Positives = 363/408 (88%), Gaps = 1/408 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT-KEDLITMATRLSVTS 359
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +EDSEA+TT KE+++TMA R+S+TS
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEDSEAATTAKENVVTMAARISITS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQV 407
           KELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ 
Sbjct: 361 KELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQA 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461397|ref|XP_002284846.1| PREDICTED: leucine-rich repeat-containing protein 40-like isoform 1 [Vitis vinifera]

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 309/411 (75%), Positives = 360/411 (87%), Gaps = 5/411 (1%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           M+R LKAAR SGSLNLSNR+LR+VP+EVY++ D  GEG+KWWEAV+LQKLILAHN+IE L
Sbjct: 1   MERALKAARASGSLNLSNRALREVPDEVYRSLDAIGEGEKWWEAVELQKLILAHNDIESL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL LL+VLN+S+NKL  LPAAIGEL MLKSLD+S NSI+ IP+ IGSAT+LVK D
Sbjct: 61  REDLKNLSLLSVLNLSNNKLVHLPAAIGELPMLKSLDLSQNSIVDIPEVIGSATSLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CS+N+LK+LP+SLGRC NL + KASNNCITSLPEDLA C K+ KLDVEGNKLT+LS N+I
Sbjct: 121 CSNNKLKDLPNSLGRCSNLLELKASNNCITSLPEDLAHCLKLIKLDVEGNKLTMLSENMI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASW +LTEL AS+NLL G+PE IG LSRLIRLD HQNRI SIP+SI GCCSLAEFYMGNN
Sbjct: 181 ASWVLLTELNASRNLLTGLPENIGRLSRLIRLDFHQNRISSIPASIKGCCSLAEFYMGNN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
            LS+L AE+G LS LGTLDLHSNQLKEY VEAC+LRL VLDLSNNSLSGLPPEIG MTTL
Sbjct: 241 VLSSLTAEIGALSLLGTLDLHSNQLKEYPVEACKLRLQVLDLSNNSLSGLPPEIGMMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED-----SEASTTKEDLITMATRL 355
           RKL+LTGNPLRTLRSSLV+GPTPALLK+LRSRL  +E      + A+T KE+++TMA R+
Sbjct: 301 RKLVLTGNPLRTLRSSLVSGPTPALLKFLRSRLSTDEGVFLFFTSATTAKENVVTMAARI 360

Query: 356 SVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
           S+TSKELSLEGM LSA+P+++WE+ EI K+DLSRNSIQELPPEL+SC SLQ
Sbjct: 361 SITSKELSLEGMGLSAVPAQVWESSEIVKVDLSRNSIQELPPELTSCVSLQ 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830120|ref|XP_002882942.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297328782|gb|EFH59201.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 299/407 (73%), Positives = 354/407 (86%), Gaps = 1/407 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+I  L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPIEVYQCLETTGEGENWWEAVDLQKLILAHNDIAVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHN LS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNNLSQLPAAIGELTAMKSLDVSFNSITELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+ KELP S+GRCL+LSD KASNN I+SLPED+ +CSK+SKLDVEGN+LT LS N I
Sbjct: 121 CSSNRFKELPESIGRCLDLSDLKASNNQISSLPEDMVNCSKLSKLDVEGNRLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTMLTEL ASKN+L+G+P+ IGSLSRLIRLDLHQN+ILS+P SI  C SL EFY+G N
Sbjct: 181 ASWTMLTELNASKNMLSGLPQNIGSLSRLIRLDLHQNKILSVPPSIGDCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
           KELSLEG+NLSA+PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQ
Sbjct: 361 KELSLEGLNLSAVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQ 407

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7021726|gb|AAF35407.1| unknown protein [Arabidopsis thaliana]

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/407 (73%), Positives = 352/407 (86%), Gaps = 1/407 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQ
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQ 407

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15795106|dbj|BAB02370.1| leucine-rich repeat protein; contains similarity to elicitor-inducible receptor EIR [Arabidopsis thaliana]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 298/407 (73%), Positives = 352/407 (86%), Gaps = 1/407 (0%)

Query: 1   MDRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL 60
           MDRILKAARTSGSLNLSNRSL+DVP EVY+  +  GEG+ WWEAVDLQKLILAHN+IE L
Sbjct: 1   MDRILKAARTSGSLNLSNRSLKDVPTEVYQCLETTGEGENWWEAVDLQKLILAHNDIEVL 60

Query: 61  KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD 120
           +EDL+NL  L VLNVSHNKLS+LPAAIGEL  +KSLDVSFNSI ++P++IGSA +LVK D
Sbjct: 61  REDLKNLACLVVLNVSHNKLSQLPAAIGELTAMKSLDVSFNSISELPEQIGSAISLVKLD 120

Query: 121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLI 180
           CSSN+LKELP S+GRCL+LSD KA+NN I+SLPED+ +CSK+SKLDVEGNKLT LS N I
Sbjct: 121 CSSNRLKELPDSIGRCLDLSDLKATNNQISSLPEDMVNCSKLSKLDVEGNKLTALSENHI 180

Query: 181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ASWTML EL A KN+L  +P+ IGSLSRLIRLDLHQN+I S+P SI GC SL EFY+G N
Sbjct: 181 ASWTMLAELNACKNMLGVLPQNIGSLSRLIRLDLHQNKISSVPPSIGGCSSLVEFYLGIN 240

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTL 300
           +LS LPAE+G LS+LGTLDL SNQLKEY V AC+L+LS LDLSNNSL+GL PE+G MTTL
Sbjct: 241 SLSTLPAEIGDLSRLGTLDLRSNQLKEYPVGACKLKLSYLDLSNNSLTGLHPELGNMTTL 300

Query: 301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST-TKEDLITMATRLSVTS 359
           RKL+L GNPLRTLRSSLVNGPT ALLKYLRSRL  +E++ AST TKE++I  A R+S++S
Sbjct: 301 RKLVLVGNPLRTLRSSLVNGPTAALLKYLRSRLSNSEETSASTPTKENVIASAARMSISS 360

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
           KELSLEG+NLS +PSE+WE+GEITK++LS+NSI+ELP +LS+  SLQ
Sbjct: 361 KELSLEGLNLSDVPSEVWESGEITKVNLSKNSIEELPAQLSTSVSLQ 407

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
ZFIN|ZDB-GENE-030131-6062	601	lrrc40 "leucine rich repeat co	0.953	0.680	0.300	6.9e-53
MGI|MGI:1914394	602	Lrrc40 "leucine rich repeat co	0.965	0.687	0.309	3.4e-45
UNIPROTKB|E1BU15	582	SHOC2 "Leucine-rich repeat pro	0.820	0.604	0.309	1.2e-35
ZFIN|ZDB-GENE-050208-523	561	shoc2 "soc-2 suppressor of cle	0.808	0.618	0.308	2.1e-34
RGD|1308146	582	Shoc2 "soc-2 (suppressor of cl	0.808	0.596	0.306	1.4e-33
UNIPROTKB|Q8AVI4	577	shoc2 "Leucine-rich repeat pro	0.808	0.601	0.306	1.7e-33
MGI|MGI:1927197	582	Shoc2 "soc-2 (suppressor of cl	0.808	0.596	0.303	1.9e-33
WB|WBGene00002632	699	let-413 [Caenorhabditis elegan	0.811	0.497	0.298	3.5e-33
UNIPROTKB|O61967	699	let-413 "Protein lap1" [Caenor	0.811	0.497	0.298	3.5e-33
UNIPROTKB|A6QLV3	582	SHOC2 "Leucine-rich repeat pro	0.808	0.596	0.303	6.7e-33

ZFIN|ZDB-GENE-030131-6062 lrrc40 "leucine rich repeat containing 40" [Danio rerio (taxid:7955)]

 Score = 488 (176.8 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
 Identities = 131/436 (30%), Positives = 213/436 (48%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EA------GEGDKWWEAVDLQKLILA 53
             +LKAAR SG          +VP  V++ N D   EA      G  D+WWE  DL KL+L+
Sbjct:    29 LLKAARKSGQLNLSGRGLTEVPASVWRLNLDTPQEAKQNVSFGAEDRWWEQTDLTKLLLS 88

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ + +D++ LP L VL++  N+LS LP +IG+L  L+ L +S N + ++P  +   
Sbjct:    89 SNKLQSIPDDVKLLPALVVLDIHDNQLSSLPDSIGDLEQLQKLILSHNKLTELPSGVWRL 148

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
             T L       N ++++P  LG+ +NL +   SNN +  +PE LA+   + KLD+  NKL 
Sbjct:   149 TNLRCLHLQQNLIEQIPRDLGQLVNLDELDLSNNHLIDIPESLANLQNLVKLDLSCNKLK 208

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L  S+N +  +P  +  +  L +L L  N++  +P  +  C +L 
Sbjct:   209 SLPP-AISQMKNLRMLDCSRNQMESIPPVLAQMESLEQLYLRHNKLRYLPE-LPCCKTLK 266

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E + GNN +  L AE L  L+ L  L+L  N++K    E                    P
Sbjct:   267 ELHCGNNQIEVLEAEHLKHLNALSLLELRDNKVKSLPEEITLLQGLERLDLTNNDISSLP 326

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLR +R  L+   T  LLKYLRSR+ E  +       +  +T 
Sbjct:   327 CGLGTLPKLKSLSLEGNPLRAIRRDLLTKGTGELLKYLRSRVQEPPNGGLKEEPKTAMTF 386

Query:   352 ATRLSV------TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPEL--- 399
              ++  +      T K L       + IP ++++A +   +  ++ S+N +  +P  +   
Sbjct:   387 PSQAKINVHAIKTLKTLDYSEKQDATIPDDVFDAVDGNPVANVNFSKNQLTAVPHRIVDL 446

Query:   400 -SSCASLQVKFSDLVT 414
               S A + + F+ L T
Sbjct:   447 KDSLADINLGFNKLTT 462

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1914394 Lrrc40 "leucine rich repeat containing 40" [Mus musculus (taxid:10090)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 136/439 (30%), Positives = 220/439 (50%)

Query:     4 ILKAARTSGXXXXXXXXXXDVPNEVYK-NFD---EAGEG------DKWWEAVDLQKLILA 53
             +LKAAR+SG          +VP  V++ N D   EA +       ++WW+  DL KLI++
Sbjct:    31 LLKAARSSGQLNLAGRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWDQTDLTKLIIS 90

Query:    54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSA 113
              N ++ L +DLR LP LTVL++  N+L+ LP+AI EL  L+ L+VS N +  +P+EI S 
Sbjct:    91 SNKLQSLSDDLRLLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKILPEEITSL 150

Query:   114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
               L       N+L  +P        L D   S+N + ++P D A  S + +L++  N+L 
Sbjct:   151 KNLRTLHLQHNELTCIPEGFEHLSCLEDLDLSSNRLATVPADFALLSSLLRLNLSSNQLK 210

Query:   174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
              L    I+    L  L    NLL  +P  +GS+  L  L L +N++  +P   S C  L 
Sbjct:   211 NLPAE-ISRMKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPS-CRQLK 268

Query:   234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQXXXXXXXXXXXXXXXXP 291
             E ++  N +  L AE L  L  +  LDL  N+L+    E A                  P
Sbjct:   269 ELHLAENQIEKLGAEHLQHLQAILVLDLRGNKLRSVPEEMALLQSLERLDLSNNDISSLP 328

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
               +G +  L+ L L GNPLRT+R  ++   T  +LKYLRS++ ++  ++  +  E  +T+
Sbjct:   329 CSLGNLH-LKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTL 387

Query:   352 AT--RLSV----TSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNSIQELPPELSSC 402
              +  R+++    T K L       + IP ++++A +   IT ++ S+N + E+P  +   
Sbjct:   388 PSEARVNIHAIATLKLLDYSDKQATLIPDDLFDATKTTLITSINFSKNQLCEIPQRIVEL 447

Query:   403 ASLQVKFSDLVTNKESCIS 421
               + +  + L  NK S IS
Sbjct:   448 KEMVLDIN-LSFNKLSFIS 465

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BU15 SHOC2 "Leucine-rich repeat protein SHOC-2" [Gallus gallus (taxid:9031)]

 Score = 387 (141.3 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 115/371 (30%), Positives = 186/371 (50%)

Query:    42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             +    L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N
Sbjct:   189 YRLTSLATLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHN 248

Query:   102 SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK 161
              +  +P+EIGS T +   D   N+L +LP ++G   +LS      N ++++P+ LA CS+
Sbjct:   249 QLEHLPEEIGSCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIPKSLAKCSE 308

Query:   162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRIL 220
             + +L++E N ++ L   L++S   LT L  ++N     P    S  S +  L++  NRI 
Sbjct:   309 LDELNLENNNISTLPEGLLSSLVKLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRIN 368

Query:   221 SIPSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXX 279
              IP  I S    L++  M +N L++LP + G  + +  L+L +NQL +   +        
Sbjct:   369 KIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLE 428

Query:   280 XXXXXXXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                         P  IG +  LR+L L  N L +L + +      A LK L+  +  N  
Sbjct:   429 VLILSNNLLKKLPHGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQ 482

Query:   339 SEASTTKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELP 396
                 TT    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP
Sbjct:   483 L---TTLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLP 534

Query:   397 PELSSCASLQV 407
              EL+ C+ L +
Sbjct:   535 FELALCSKLSI 545

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA

ZFIN|ZDB-GENE-050208-523 shoc2 "soc-2 suppressor of clear homolog (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 375 (137.1 bits), Expect = 2.1e-34, P = 2.1e-34
 Identities = 113/366 (30%), Positives = 181/366 (49%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D++NL  LT+L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   173 LTTLYLRFNRITTVEKDIKNLSKLTMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 232

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N L +LP ++G   +++      N ++++P  LA C ++ +L+
Sbjct:   233 PKEIGNCTQITNLDLQHNDLLDLPETIGNLASINRLGLRYNRLSAIPRSLAKCRELEELN 292

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++VL   L++S   LT L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   293 LENNNISVLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSLNMEHNRINKIPFG 352

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   + C           
Sbjct:   353 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDICGLVSLEMLTLS 412

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  IG +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   413 NNLLKKLPYGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 463

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL   +P EI     +  L L+ N ++  LP EL+ 
Sbjct:   464 TLPRGIGHLTNLTY----LGL-GENLLQHLPEEIGTLENLEDLYLNDNPNLHSLPFELAL 518

Query:   402 CASLQV 407
             C+ L +
Sbjct:   519 CSKLSI 524

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

RGD|1308146 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 369 (135.0 bits), Expect = 1.4e-33, P = 1.4e-33
 Identities = 112/366 (30%), Positives = 182/366 (49%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D+RNLP L+ L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   194 LTTLYLRFNRITAVEKDVRNLPRLSTLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 253

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N+L +LP ++G   +L+      N ++++P  LA CS + +L+
Sbjct:   254 PKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLNRLGLRYNRLSAIPRSLAKCSALEELN 313

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++ L  +L++S   L  L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   314 LENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFG 373

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   +             
Sbjct:   374 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILS 433

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  +G +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   434 NNLLKKLPHGLGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 484

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP EL+ 
Sbjct:   485 TLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELAL 539

Query:   402 CASLQV 407
             C+ L +
Sbjct:   540 CSKLSI 545

GO:0000164 "protein phosphatase type 1 complex" evidence=IEA;ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0019903 "protein phosphatase binding" evidence=IEA;ISO;ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=IEA;ISO;ISS

UNIPROTKB|Q8AVI4 shoc2 "Leucine-rich repeat protein SHOC-2" [Xenopus laevis (taxid:8355)]

 Score = 368 (134.6 bits), Expect = 1.7e-33, P = 1.7e-33
 Identities = 112/366 (30%), Positives = 181/366 (49%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++DL+ LP LT+L++  NK+  LPA IGEL  L +LDV+ N +  +
Sbjct:   189 LTTLFLRFNRITAVEKDLKMLPKLTMLSIRENKIKHLPAEIGELCNLITLDVAHNQLEHL 248

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N+L +LP ++G   +LS      N ++++P  L+ CS++ +L+
Sbjct:   249 PKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAVPRSLSKCSELDELN 308

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++ L   L++S   +  L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   309 LENNNISTLPEGLLSSLVKVNSLTLARNCFQSYPVGGPSQFSSIYSLNMEHNRINKIPFG 368

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   +             
Sbjct:   369 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSIEVLILS 428

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  IG +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   429 NNLLKKLPHGIGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 479

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP EL+ 
Sbjct:   480 TLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELAL 534

Query:   402 CASLQV 407
             C+ L +
Sbjct:   535 CSKLSI 540

GO:0000164 "protein phosphatase type 1 complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISS

MGI|MGI:1927197 Shoc2 "soc-2 (suppressor of clear) homolog (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 368 (134.6 bits), Expect = 1.9e-33, P = 1.9e-33
 Identities = 111/366 (30%), Positives = 184/366 (50%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D++NLP L++L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   194 LTTLYLRFNRITTVEKDIKNLPKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 253

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N L +LP ++G   +L+      N ++++P  LA CS + +L+
Sbjct:   254 PKEIGNCTQITNLDLQHNDLLDLPDTIGNLSSLNRLGLRYNRLSAIPRSLAKCSALEELN 313

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++ L  +L++S   L  L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   314 LENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFG 373

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   +             
Sbjct:   374 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILS 433

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  +G +  LR+L L  N L +L + +      A LK L+  +  N  ++ ST
Sbjct:   434 NNLLKKLPHGLGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTN--NQLST 485

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
                  I   T L+     L L G NL + +P EI     + +L L+ N ++  LP EL+ 
Sbjct:   486 LPRG-IGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELAL 539

Query:   402 CASLQV 407
             C+ L +
Sbjct:   540 CSKLSI 545

GO:0000164 "protein phosphatase type 1 complex" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISO

WB|WBGene00002632 let-413 [Caenorhabditis elegans (taxid:6239)]

 Score = 369 (135.0 bits), Expect = 3.5e-33, P = 3.5e-33
 Identities = 109/365 (29%), Positives = 175/365 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSD 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L V   D
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVL--D 364

Query:   412 LVTNK 416
             + +NK
Sbjct:   365 VASNK 369

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0060465 "pharynx development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007043 "cell-cell junction assembly" evidence=IMP

GO:0030029 "actin filament-based process" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|O61967 let-413 "Protein lap1" [Caenorhabditis elegans (taxid:6239)]

 Score = 369 (135.0 bits), Expect = 3.5e-33, P = 3.5e-33
 Identities = 109/365 (29%), Positives = 175/365 (47%)

Query:    53 AHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS 112
             + +N++ +  D+     L  LN++ N + EL   +  L  L+ LDVS N +  +P EIG+
Sbjct:    21 SQSNLQAIPSDIFRFRKLEDLNLTMNNIKELDHRLFSLRHLRILDVSDNELAVLPAEIGN 80

Query:   113 ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL 172
              T L++ + + N + +LP ++  C  L+    S+N  T LPE + +CS ++ L +    L
Sbjct:    81 LTQLIELNLNRNSIAKLPDTMQNCKLLTTLNLSSNPFTRLPETICECSSITILSLNETSL 140

Query:   173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             T+L +N I S T L  L A  NLL  +P +I  L +L  LDL QN + ++P+ I    SL
Sbjct:   141 TLLPSN-IGSLTNLRVLEARDNLLRTIPLSIVELRKLEELDLGQNELEALPAEIGKLTSL 199

Query:   233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQX-XXXXXXXXXXXXXXXP 291
              EFY+  N+L++LP  +     L  LD+  NQ+        +                 P
Sbjct:   200 REFYVDINSLTSLPDSISGCRMLDQLDVSENQIIRLPENLGRMPNLTDLNISINEIIELP 259

Query:   292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
                G++  L+ L    N L  L S +  G   +L +     L +N  ++   T  DL  +
Sbjct:   260 SSFGELKRLQMLKADRNSLHNLTSEI--GKCQSLTELY---LGQNFLTDLPDTIGDLRQL 314

Query:   352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSD 411
              T        L+++  NLS IP  I     +T L L +N + ELP  +  C +L V   D
Sbjct:   315 TT--------LNVDCNNLSDIPDTIGNCKSLTVLSLRQNILTELPMTIGKCENLTVL--D 364

Query:   412 LVTNK 416
             + +NK
Sbjct:   365 VASNK 369

GO:0045108 "regulation of intermediate filament polymerization or depolymerization" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEP

GO:0015031 "protein transport" evidence=IEP

GO:0005912 "adherens junction" evidence=IDA

UNIPROTKB|A6QLV3 SHOC2 "Leucine-rich repeat protein SHOC-2" [Bos taurus (taxid:9913)]

 Score = 363 (132.8 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 111/366 (30%), Positives = 182/366 (49%)

Query:    47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             L  L L  N I  +++D++NL  L++L++  NK+ +LPA IGEL  L +LDV+ N +  +
Sbjct:   194 LTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHL 253

Query:   107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
             P EIG+ T +   D   N+L +LP ++G   +LS      N ++++P  LA CS + +L+
Sbjct:   254 PKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELN 313

Query:   167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
             +E N ++ L  +L++S   L  L  ++N     P    S  S +  L++  NRI  IP  
Sbjct:   314 LENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFG 373

Query:   226 I-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXX 284
             I S    L++  M +N L++LP + G  + +  L+L +NQL +   +             
Sbjct:   374 IFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILS 433

Query:   285 XXXXXXPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
                    P  +G +  LR+L L  N L +L + +      A LK L+  +  N      T
Sbjct:   434 NNLLKKLPHGLGNLRKLRELDLEENKLESLPNEI------AYLKDLQKLVLTNNQL---T 484

Query:   344 TKEDLITMATRLSVTSKELSLEGMNL-SAIPSEIWEAGEITKLDLSRN-SIQELPPELSS 401
             T    I   T L+     L L G NL + +P EI     + +L L+ N ++  LP EL+ 
Sbjct:   485 TLPRGIGHLTNLT----HLGL-GENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELAL 539

Query:   402 CASLQV 407
             C+ L +
Sbjct:   540 CSKLSI 545

GO:0019903 "protein phosphatase binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0000164 "protein phosphatase type 1 complex" evidence=ISS

GO:0046579 "positive regulation of Ras protein signal transduction" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00110941	hypothetical protein (581 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.8595.1.1	hypothetical protein (375 aa)			•						0.490
	eugene3.00410223	hypothetical protein (478 aa)			•						0.488
	eugene3.00131095	annotation not avaliable (394 aa)			•						0.484
	eugene3.00190610	annotation not avaliable (370 aa)			•						0.483
	fgenesh4_pg.C_LG_XVIII001032	hypothetical protein (534 aa)			•						0.478
	eugene3.100750001	hypothetical protein (275 aa)			•						0.478
	fgenesh4_pg.C_scaffold_11988000001	hypothetical protein (315 aa)			•						0.455
	fgenesh4_pg.C_scaffold_13412000001	hypothetical protein (444 aa)			•						0.453
	eugene3.06320001	hypothetical protein (344 aa)			•						0.450
	gw1.XI.3221.1	hypothetical protein (380 aa)			•						0.445

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	429
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-19
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-17
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-17
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-14
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	1e-13
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	7e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-10
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	7e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	2e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-07
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-04
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	9e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 111/390 (28%), Positives = 175/390 (44%), Gaps = 54/390 (13%)

Query: 67  LPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN 124
           +P L  L++S+N LS E+P  IG    LK LD+  N ++ KIP+ + + T+L     +SN
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 125 QL-KELPSSLGRCLNLS-DFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           QL  ++P  LG+  +L   +   NN    +P ++   + ++ LD+  N LT    + + +
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQN----------------RIL----- 220
              L  L   +N L+G +P +I SL +LI LDL  N                 IL     
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318

Query: 221 ----SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEA-CQ 274
                IP +++    L    + +N  S  +P  LGK + L  LDL +N L     E  C 
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 275 L-RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
              L  L L +NSL G +P  +G   +LR++ L  N   +    L +  T   L Y    
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN---SFSGELPSEFTKLPLVYFLDI 435

Query: 333 LPENEDSEASTTKEDLITMAT----------RLSVTSKELSLEGMNLS------AIPSEI 376
              N     ++ K D+ ++             L  +     LE ++LS      A+P ++
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL 495

Query: 377 WEAGEITKLDLSRNSIQ-ELPPELSSCASL 405
               E+ +L LS N +  E+P ELSSC  L
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKL 525

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 90.7 bits (225), Expect = 2e-19
 Identities = 92/282 (32%), Positives = 140/282 (49%), Gaps = 24/282 (8%)

Query: 46  DLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI 103
           +L+ L L  NN   K+   L +LP L VL +  NK S E+P  +G+ + L  LD+S N++
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Query: 104 M-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS 160
             +IP+ + S+  L K    SN L+ E+P SLG C +L   +  +N  +  LP +     
Sbjct: 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN-LLNGMPETIGSLSRLIRLDLHQNRI 219
            +  LD+  N L    N+       L  L  ++N    G+P++ GS  RL  LDL +N+ 
Sbjct: 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQF 487

Query: 220 L-SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLK--------EYC 269
             ++P  +     L +  +  N LS  +P EL    KL +LDL  NQL         E  
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 270 VEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPL 310
           V      LS LDLS N LSG +P  +G + +L ++ ++ N L
Sbjct: 548 V------LSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 82.7 bits (204), Expect = 3e-17
 Identities = 87/263 (33%), Positives = 124/263 (47%), Gaps = 2/263 (0%)

Query: 44  AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           AV+   L L+ N +  L   L  L  L +L+ S     +    +  L  L SLD++ N +
Sbjct: 46  AVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL 105

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGR-CLNLSDFKASNNCITSLPEDLADCSKM 162
                E+   T L   D  +N + ++P  +G    NL +   S+N I SLP  L +   +
Sbjct: 106 RSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNL 165

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
             LD+  N L+ L   L    + L  L  S N ++ +P  I  LS L  LDL  N I+ +
Sbjct: 166 KNLDLSFNDLSDLPKLLSNL-SNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 282
            SS+S   +L+   + NN L  LP  +G LS L TLDL +NQ+           L  LDL
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL 284

Query: 283 SNNSLSGLPPEIGKMTTLRKLLL 305
           S NSLS   P I  +  L +LLL
Sbjct: 285 SGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 81.9 bits (202), Expect = 6e-17
 Identities = 77/292 (26%), Positives = 122/292 (41%), Gaps = 26/292 (8%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM-LKSLDVSFNSIM 104
            L  L L  N +     +L  L  LT L++ +N ++++P  IG L   LK LD+S N I 
Sbjct: 94  PLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE 153

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
            +P  + +   L   D S N L +LP  L    NL++   S N I+ LP ++   S    
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSA--- 210

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
                                L EL  S N +  +  ++ +L  L  L+L  N++  +P 
Sbjct: 211 ---------------------LEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPE 249

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 284
           SI    +L    + NN +S++ + LG L+ L  LDL  N L         L L +  L N
Sbjct: 250 SIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
             L+    E+   + L    +  N   +   +L    +   L  L + L E+
Sbjct: 309 LLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNALDES 360

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 74.5 bits (183), Expect = 4e-14
 Identities = 114/407 (28%), Positives = 174/407 (42%), Gaps = 65/407 (15%)

Query: 67  LPLLTVLNVSHNKLS-ELPAAI-----------------------GELHMLKSLDVSFNS 102
           LP +  +N+S+N+LS  +P  I                       G +  L++LD+S N 
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM 151

Query: 103 IM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFK-ASNNCITSLPEDLADC 159
           +  +IP++IGS ++L   D   N L  ++P+SL    +L     ASN  +  +P +L   
Sbjct: 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM 211

Query: 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTEL-IASKNLLNGMPETIGSLSRLIRLDLHQNR 218
             +  + +  N L+      I   T L  L +   NL   +P ++G+L  L  L L+QN+
Sbjct: 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271

Query: 219 IL-SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEA-CQL 275
           +   IP SI     L    + +N+LS  +P  + +L  L  L L SN        A   L
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Query: 276 -RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLR----------------TLRSSL 317
            RL VL L +N  SG +P  +GK   L  L L+ N L                  L S+ 
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391

Query: 318 VNGPTPALLKYLRS----RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA-I 372
           + G  P  L   RS    RL +N  S       +L +  T+L +    L +   NL   I
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFS------GELPSEFTKLPLVYF-LDISNNNLQGRI 444

Query: 373 PSEIWEAGEITKLDLSRNSIQ-ELPPELSSCASLQVKFSDLVTNKES 418
            S  W+   +  L L+RN     LP    S  S +++  DL  N+ S
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGLP---DSFGSKRLENLDLSRNQFS 488

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 72.8 bits (178), Expect = 1e-13
 Identities = 62/220 (28%), Positives = 104/220 (47%), Gaps = 21/220 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAV------DLQKLILAHNNIEKLKEDLRN 66
           +L L N  L+ +P  +  N            ++       +Q++ L+ N I +L E L +
Sbjct: 203 TLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPS 262

Query: 67  LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
              L  L++ HNK+S LP  + E   L+ L V  NSI  +P  + S   +   +  SN L
Sbjct: 263 A--LQSLDLFHNKISCLPENLPE--ELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
             LP +L     L   +A  N +TSLP  L    ++  LDV  N++TVL   L  +   +
Sbjct: 317 TALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLPPT---I 369

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           T L  S+N L  +PE + +  ++  +   +N ++ +P S+
Sbjct: 370 TTLDVSRNALTNLPENLPAALQI--MQASRNNLVRLPESL 407

Length = 754

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 67.0 bits (163), Expect = 7e-12
 Identities = 61/221 (27%), Positives = 107/221 (48%), Gaps = 29/221 (13%)

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
           +N+LK LP +L    N+    A++N +TS+P  L D  +  +L +  N++T L   L ++
Sbjct: 208 NNELKSLPENLQG--NIKTLYANSNQLTSIPATLPDTIQEMELSI--NRITELPERLPSA 263

Query: 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
              L  L    N ++ +PE +     L  L ++ N I ++P+ +     +    + +N+L
Sbjct: 264 ---LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNSL 316

Query: 243 SALPAELGKLSKLGTLDLHSNQLKEYCV-EACQLRLSVLDLSNNSLSGLPPEIGKMTTLR 301
           +ALP  L     L TL+   N L    +  +    L VLD+S N ++ LP  +    T+ 
Sbjct: 317 TALPETLP--PGLKTLEAGENALT--SLPASLPPELQVLDVSKNQITVLPETLPP--TIT 370

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRS------RLPEN 336
            L ++ N L  L  +L     PA L+ +++      RLPE+
Sbjct: 371 TLDVSRNALTNLPENL-----PAALQIMQASRNNLVRLPES 406

Length = 754

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 98/367 (26%), Positives = 155/367 (42%), Gaps = 49/367 (13%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+ + L +NN+  ++  ++  L  L  L++ +N L+  +P+++G L  L+ L +  N + 
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 105 -KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKA-SNNCITSLPEDLADCSK 161
             IP  I S   L+  D S N L  E+P  + +  NL      SNN    +P  L    +
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 220
           +  L +  NK +      +     LT L  S N L G +PE + S   L +L L  N + 
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393

Query: 221 S-IPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLK----EYCVEACQ 274
             IP S+  C SL    + +N+ S  LP+E  KL  +  LD+ +N L+        +   
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 275 LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           L++  L L+ N   G  P+      L  L L+ N          +G  P  L      L 
Sbjct: 454 LQM--LSLARNKFFGGLPDSFGSKRLENLDLSRN--------QFSGAVPRKLG----SLS 499

Query: 335 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ- 393
           E               M  +LS    +LS E      IP E+    ++  LDLS N +  
Sbjct: 500 E--------------LMQLKLS--ENKLSGE------IPDELSSCKKLVSLDLSHNQLSG 537

Query: 394 ELPPELS 400
           ++P   S
Sbjct: 538 QIPASFS 544

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 51/186 (27%), Positives = 99/186 (53%), Gaps = 8/186 (4%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+++ L  N+   +L  +   LPL+  L++S+N L   + +   ++  L+ L ++ N   
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 105 -KIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKASNNCITS-LPEDLADCSK 161
             +PD  GS   L   D S NQ    +P  LG    L   K S N ++  +P++L+ C K
Sbjct: 466 GGLPDSFGSKR-LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK 524

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 220
           +  LD+  N+L+       +   +L++L  S+N L+G +P+ +G++  L+++++  N + 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 221 -SIPSS 225
            S+PS+
Sbjct: 585 GSLPST 590

Length = 968

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 63/215 (29%), Positives = 90/215 (41%), Gaps = 22/215 (10%)

Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L++  N L+ LPA    L  L        S+  +P        L +   S NQL 
Sbjct: 262 PGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP------PGLQELSVSDNQLA 315

Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   +   ++S  D +   L  L + L   W    
Sbjct: 316 SLPALPSE---LCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN 372

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLD----------LHQNRILSIPSSISGCCSLAEFYM 237
            L +   L +G+ E I S +RL  L           +  NR+ S+P   SG  SL+ +  
Sbjct: 373 RLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVY-- 430

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA 272
             N L+ LP  L  LS   T++L  N L E  ++A
Sbjct: 431 -RNQLTRLPESLIHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 2e-07
 Identities = 83/298 (27%), Positives = 116/298 (38%), Gaps = 40/298 (13%)

Query: 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA 181
           SSN L  LPSSL R L+L     S        E+L +   +  LD+  N+L    +  + 
Sbjct: 55  SSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-LL 113

Query: 182 SWTMLTELIASKNLLNGMPETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
             T LT L    N +  +P  IG L S L  LDL  N+I S+PS +    +L    +  N
Sbjct: 114 ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTT 299
            LS LP  L  LS L  LDL  N++ +   E   L  L  LDLSNNS+  L   +  +  
Sbjct: 174 DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKN 233

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           L  L L+ N L  L  S+ N      L                                 
Sbjct: 234 LSGLELSNNKLEDLPESIGNLSNLETLDLSN----------------------------- 264

Query: 360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKE 417
                   N  +  S +     + +LDLS NS+    P ++    L     +L+   +
Sbjct: 265 --------NQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLK 314

Length = 394

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 78/263 (29%), Positives = 117/263 (44%), Gaps = 39/263 (14%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
           +T L +  N L+ LPA   E   L++L+VS N +  +P        L  F      L  L
Sbjct: 224 ITTLVIPDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 280

Query: 130 PSSLGRCL--------------NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           PS L +                 L +   S+N + SLP   A  S++ KL    N+LT  
Sbjct: 281 PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAYNNQLT-- 335

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
             +L    + L EL  S N L  +P      S L +L  + NR+ S+P+  SG   L E 
Sbjct: 336 --SLPTLPSGLQELSVSDNQLASLPTLP---SELYKLWAYNNRLTSLPALPSG---LKEL 387

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEY-CVEACQLRLSVLDLSNNSLSGLPPEI 294
            +  N L++LP      S+L  L +  N+L     + +  L LSV     N L+ LP  +
Sbjct: 388 IVSGNRLTSLPV---LPSELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPESL 441

Query: 295 GKMTTLRKLLLTGNPL--RTLRS 315
             +++   + L GNPL  RTL++
Sbjct: 442 IHLSSETTVNLEGNPLSERTLQA 464

Length = 788

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.4 bits (123), Expect = 6e-07
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 4/138 (2%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-LPAAIGELHMLKSLD 97
            + W+   LQ L LA N       D      L  L++S N+ S  +P  +G L  L  L 
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK 505

Query: 98  VSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPE 154
           +S N +  +IPDE+ S   LV  D S NQL  ++P+S      LS    S N ++  +P+
Sbjct: 506 LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 155 DLADCSKMSKLDVEGNKL 172
           +L +   + ++++  N L
Sbjct: 566 NLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 20/239 (8%)

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246
           TEL      L  +P  I    ++  L L  N + S+P ++ G  ++   Y  +N L+++P
Sbjct: 181 TELRLKILGLTTIPACIPE--QITTLILDNNELKSLPENLQG--NIKTLYANSNQLTSIP 236

Query: 247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
           A L     +  ++L  N++ E   E     L  LDL +N +S LP  + +   LR L + 
Sbjct: 237 ATLP--DTIQEMELSINRITEL-PERLPSALQSLDLFHNKISCLPENLPE--ELRYLSVY 291

Query: 307 GNPLRTLRSSLVNGPTPAL-----LKYLRSRLPEN-EDSEASTTKEDLITMATRLSVTSK 360
            N +RTL + L +G T        L  L   LP   +  EA      L ++   L    +
Sbjct: 292 DNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA--LTSLPASLPPELQ 349

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS-LQVKFSDLVTNKES 418
            L +    ++ +P  +     IT LD+SRN++  LP  L +    +Q   ++LV   ES
Sbjct: 350 VLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPES 406

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 245 LPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLSGLPPE-IGKMTTLR 301
           +P ++ KL  L +++L  N ++         +  L VLDLS NS +G  PE +G++T+LR
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 302 KLLLTGNPL 310
            L L GN L
Sbjct: 494 ILNLNGNSL 502

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
           L+ L L++N +  + +   + LP L VL++S N L+ +   A   L  L+SLD+S N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 28/92 (30%), Positives = 52/92 (56%), Gaps = 4/92 (4%)

Query: 60  LKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALV 117
           +  D+  L  L  +N+S N +   +P ++G +  L+ LD+S+NS    IP+ +G  T+L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 118 KFDCSSNQLK-ELPSSLG-RCLNLSDFKASNN 147
             + + N L   +P++LG R L+ + F  ++N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 8e-04
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 208 RLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            L  LDL  NR+  IP  +  G  +L    +  N L+++  E    L  L +LDL  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 36.7 bits (86), Expect = 9e-04
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA 85
          L+ L L++N I  L   L NLP L  L++S NK+++L  
Sbjct: 3  LETLDLSNNQITDL-PPLSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 54/240 (22%), Positives = 91/240 (37%), Gaps = 12/240 (5%)

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
             L    +NL +       L  S N L  +P ++  L  L  L       L    ++   
Sbjct: 33  INLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNL 92

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY--CVEACQLRLSVLDLSNNSL 287
             L    +  N L +  +EL +L+ L +LDL +N + +    +   +  L  LDLS+N +
Sbjct: 93  LPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI 152

Query: 288 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
             LP  +  +  L+ L L+ N L  L   L N      L    +++ +        +  +
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALE 212

Query: 348 LITMA-----TRLSVTSKELSLEGMNLSAIPSEIWEAG-----EITKLDLSRNSIQELPP 397
            + ++       LS  S   +L G+ LS    E           +  LDLS N I  +  
Sbjct: 213 ELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	429
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.86
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.81
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.62
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.4
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.39
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.36
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.33
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.24
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.19
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.02
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.98
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.91
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.74
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.62
PLN03150	623	hypothetical protein; Provisional	98.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.48
PLN03150	623	hypothetical protein; Provisional	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.36
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.27
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.25
PRK15386	426	type III secretion protein GogB; Provisional	98.2
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
PRK15386	426	type III secretion protein GogB; Provisional	98.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.9
KOG4341	483	consensus F-box protein containing LRR [General fu	97.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.87
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.85
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.85
KOG4341	483	consensus F-box protein containing LRR [General fu	97.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.25
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.86
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.68
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.58
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.51
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.75
KOG4308	478	consensus LRR-containing protein [Function unknown	95.71
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.46
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.45
KOG4308	478	consensus LRR-containing protein [Function unknown	95.23
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.44
smart00370	26	LRR Leucine-rich repeats, outliers.	94.44
smart00370	26	LRR Leucine-rich repeats, outliers.	93.57
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.57
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.15
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.97
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.89
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	91.05
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.42
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	82.2

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.4e-43  Score=306.93  Aligned_cols=419  Identities=48%  Similarity=0.723  Sum_probs=366.4

Q ss_pred             hHHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCC
Q 014200            2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS   81 (429)
Q Consensus         2 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~   81 (429)
                      +++.+.+++--.++++++.+..+|..+......-.+.+.||.-..++.+.++.|.+..+.+.+.++..++++++++|.+.
T Consensus         2 ~~l~k~arksg~lnlsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~   81 (565)
T KOG0472|consen    2 QRLLKAARKSGSLNLSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS   81 (565)
T ss_pred             chHHHHHHhhcccccccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhh
Confidence            56788899999999999999999999998887778899999999999999999999999889999999999999999999


Q ss_pred             CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCC
Q 014200           82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK  161 (429)
Q Consensus        82 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~  161 (429)
                      .+|++++.+..++.+++++|.+..+|+.++...++..++++.|.+..+++.++.+..+..++..+|++.++|.++..+.+
T Consensus        82 ~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~  161 (565)
T KOG0472|consen   82 QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSK  161 (565)
T ss_pred             hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCC
Q 014200          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA  241 (429)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  241 (429)
                      +..+++.+|.+...++..+. +..|++++...|-++.+|+.++.+.+|..|++..|++..+| .|.+|..|++++++.|.
T Consensus       162 l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~  239 (565)
T KOG0472|consen  162 LSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ  239 (565)
T ss_pred             HHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH
Confidence            99999999999999888555 99999999999999999999999999999999999999998 79999999999999999


Q ss_pred             CCccChhh-cCCCCCCEEECCCCcCccccchhhccc-cCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccC
Q 014200          242 LSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN  319 (429)
Q Consensus       242 i~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~  319 (429)
                      +.-+|... ..++++.+||+.+|+++++|...+..+ |+++|+++|.++++|..++++ .|+.|.+.||++.++...+..
T Consensus       240 i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~  318 (565)
T KOG0472|consen  240 IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIIS  318 (565)
T ss_pred             HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHc
Confidence            99888765 589999999999999999999998877 999999999999999999999 999999999999999999999


Q ss_pred             CCcHHHHHHHHhcCCCCCcccc-----cCCh-hhHHhhhhccc--------------------------cccccccc---
Q 014200          320 GPTPALLKYLRSRLPENEDSEA-----STTK-EDLITMATRLS--------------------------VTSKELSL---  364 (429)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~--------------------------~~L~~l~l---  364 (429)
                      +++.+.+.|+...+.....+..     .+.. ...........                          .-++.+++   
T Consensus       319 ~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskN  398 (565)
T KOG0472|consen  319 KGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKN  398 (565)
T ss_pred             ccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccc
Confidence            9999999999873322222111     0000 00000000000                          11233333   


Q ss_pred             ---------------------cCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccccc
Q 014200          365 ---------------------EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGC  423 (429)
Q Consensus       365 ---------------------~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~  423 (429)
                                           ++|.++-+|..+..++.|+.|++++|-+.++|.+++.+..||.||  +++|+|.++|.|
T Consensus       399 qL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~Ln--lS~NrFr~lP~~  476 (565)
T KOG0472|consen  399 QLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLN--LSFNRFRMLPEC  476 (565)
T ss_pred             hHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheec--ccccccccchHH
Confidence                                 344444444456677889999999999999999999999999999  999999999998


Q ss_pred             cc
Q 014200          424 YL  425 (429)
Q Consensus       424 ~~  425 (429)
                      .+
T Consensus       477 ~y  478 (565)
T KOG0472|consen  477 LY  478 (565)
T ss_pred             Hh
Confidence            64

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.4e-36  Score=319.50  Aligned_cols=374  Identities=25%  Similarity=0.326  Sum_probs=194.8

Q ss_pred             cCCccEEEcCCCCCC-ccchhccCCCCCCEEECCCCCCC-CcchhhhCCCCCcEeecCCCcCc-cCCccccCCCCcCEEe
Q 014200           44 AVDLQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFD  120 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~  120 (429)
                      +++|++|++++|.+. .+|..+.++++|+.|++++|.+. .+|..+.++++|++|++++|.+. .+|..++++++|++|+
T Consensus       187 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  266 (968)
T PLN00113        187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF  266 (968)
T ss_pred             CcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence            455555555555544 34445555555555555555544 34455555555555555555444 3445555555555555


Q ss_pred             cCCCCCC-cCCccccCCCCCCEEEcCCCccc-cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC-
Q 014200          121 CSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-  197 (429)
Q Consensus       121 l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-  197 (429)
                      +++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+. 
T Consensus       267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  346 (968)
T PLN00113        267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG  346 (968)
T ss_pred             CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence            5555554 34445555555555555555554 34444555555666666555555433344555556666666666554 


Q ss_pred             cCCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCccccchhh--
Q 014200          198 GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEAC--  273 (429)
Q Consensus       198 ~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--  273 (429)
                      .+|..+..+++|+.|++++|.+. .+|..+..+++++.+++++|.++ .+|..+..+++|+.|++++|.+++..+..+  
T Consensus       347 ~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~  426 (968)
T PLN00113        347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK  426 (968)
T ss_pred             cCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc
Confidence            34555555566666666666554 34444555555555666555554 345556666666666666666553222211  


Q ss_pred             ccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccc---------------cCCCcHHHHHHHHhcCCCCC
Q 014200          274 QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSL---------------VNGPTPALLKYLRSRLPENE  337 (429)
Q Consensus       274 ~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~  337 (429)
                      ...|+.+++++|.+++ ++..+..+++|+.|++++|.+.+.....               +.+..+..+..+.. +....
T Consensus       427 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~-L~~L~  505 (968)
T PLN00113        427 LPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE-LMQLK  505 (968)
T ss_pred             CCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc-cCEEE
Confidence            1236666666666655 3444555666666666666554211110               11122222211111 00000


Q ss_pred             cccccCChhhHHhhhhccccccccccccCCccc-cCChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCC
Q 014200          338 DSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTN  415 (429)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n  415 (429)
                      ++..  .............++|+.|++++|.++ .+|..+..++.|+.|||++|++++ +|..+..+++|+.|+  +++|
T Consensus       506 Ls~N--~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~--ls~N  581 (968)
T PLN00113        506 LSEN--KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN--ISHN  581 (968)
T ss_pred             CcCC--cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe--ccCC
Confidence            0000  000000011223356666677777666 456666666777777777777665 666666677777777  7777


Q ss_pred             cccc-ccc
Q 014200          416 KESC-ISG  422 (429)
Q Consensus       416 ~i~~-i~~  422 (429)
                      ++++ +|+
T Consensus       582 ~l~~~~p~  589 (968)
T PLN00113        582 HLHGSLPS  589 (968)
T ss_pred             cceeeCCC
Confidence            7665 554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.8e-36  Score=318.00  Aligned_cols=403  Identities=23%  Similarity=0.295  Sum_probs=246.5

Q ss_pred             HHHHHhhhcCeeeccCCCCccCChhhhhhhccc------------cCCCcccccCCccEEEcCCCCCC-ccchhccCCCC
Q 014200            3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEA------------GEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPL   69 (429)
Q Consensus         3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~   69 (429)
                      ..+..+++|++|++++|.+....+..+..+..+            ..+..+..+++|++|++++|.+. .+|..+.++++
T Consensus       158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  237 (968)
T PLN00113        158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS  237 (968)
T ss_pred             hHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence            345666677777777776642222222222222            12344566777888888877776 56667777788


Q ss_pred             CCEEECCCCCCC-CcchhhhCCCCCcEeecCCCcCc-cCCccccCCCCcCEEecCCCCCC-cCCccccCCCCCCEEEcCC
Q 014200           70 LTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASN  146 (429)
Q Consensus        70 L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~  146 (429)
                      |++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|+.|++++
T Consensus       238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS  317 (968)
T ss_pred             CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence            888888777765 55667777777777777777665 45666677777777777777665 4555666667777777777


Q ss_pred             Cccc-cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC-cCCc-----------------------
Q 014200          147 NCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPE-----------------------  201 (429)
Q Consensus       147 ~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~-----------------------  201 (429)
                      |.+. .+|..+..+++|+.|++++|.+....+..+..+++|+.+++++|.+. .+|.                       
T Consensus       318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p  397 (968)
T PLN00113        318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP  397 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence            6665 44555666666666666666655433334555566666666655553 2333                       


Q ss_pred             -cccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCCc-cChhhcCCCCCCEEECCCCcCccc-cchhhcccc
Q 014200          202 -TIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEY-CVEACQLRL  277 (429)
Q Consensus       202 -~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~L  277 (429)
                       .+..+++|+.|++++|.+. .+|..+..++.|+.+++++|.++. ++..+..+++|+.|++++|.+.+. +......+|
T Consensus       398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L  477 (968)
T PLN00113        398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL  477 (968)
T ss_pred             HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccc
Confidence             3444455555555555554 334445555555556665555552 344445556666666666655432 222222347


Q ss_pred             CEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccc
Q 014200          278 SVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLS  356 (429)
Q Consensus       278 ~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (429)
                      +.|++++|.+++ +|..+.++++|+.|++++|.+..        ..+..+..+.. +....++..  .........+...
T Consensus       478 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~p~~~~~l~~-L~~L~Ls~N--~l~~~~p~~~~~l  546 (968)
T PLN00113        478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG--------EIPDELSSCKK-LVSLDLSHN--QLSGQIPASFSEM  546 (968)
T ss_pred             eEEECcCCccCCccChhhhhhhccCEEECcCCccee--------eCChHHcCccC-CCEEECCCC--cccccCChhHhCc
Confidence            777887777765 56667777888888888887753        22222221111 111111111  1111111223345


Q ss_pred             cccccccccCCccc-cCChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200          357 VTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       357 ~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      ++|+.|++++|+++ .+|..+..++.|+.|++++|++.+ +|+. +....+....  +.+|+.-|
T Consensus       547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~--~~~n~~lc  608 (968)
T PLN00113        547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASA--VAGNIDLC  608 (968)
T ss_pred             ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhh--hcCCcccc
Confidence            78999999999999 799999999999999999999998 8864 4445555666  77777443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-37  Score=281.73  Aligned_cols=395  Identities=25%  Similarity=0.342  Sum_probs=253.8

Q ss_pred             cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcchhhhC
Q 014200           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAIGE   89 (429)
Q Consensus        11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~   89 (429)
                      .+.||++++.+..+.....++..          .+..++|++++|++..+.. .|.++++|+++++..|.++.+|.....
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~l----------p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~  123 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFL----------PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHE  123 (873)
T ss_pred             ceeeecCccccccccccccCCcC----------ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccccc
Confidence            34577888777766444433321          1234567777777665533 466777777777777777766665555


Q ss_pred             CCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccccCC-ccccccCCCcEEE
Q 014200           90 LHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLD  166 (429)
Q Consensus        90 l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~  166 (429)
                      ..+|+.|++.+|.|.++ .+.+..++.|+.++++.|.++.++. ++..-.++++|++++|+++.+. ..|..+.+|..|.
T Consensus       124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk  203 (873)
T KOG4194|consen  124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK  203 (873)
T ss_pred             ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence            56677777777766655 2345666777777777777776654 3334456777777777776553 3355566677777


Q ss_pred             ccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCc
Q 014200          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSA  244 (429)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~  244 (429)
                      ++.|.++.++...|..+++|+.|++..|++..+ -..|+.+++|+.+.+..|.+..+ ..+|..+.++++|+|..|+++.
T Consensus       204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            777777777776666677777777777766554 34566677777777777777665 3456667777777777777766


Q ss_pred             c-ChhhcCCCCCCEEECCCCcCccccc--hhhccccCEEEccCCCCCCCCc-cccCCCCCCEEEccCCCCCCccccccCC
Q 014200          245 L-PAELGKLSKLGTLDLHSNQLKEYCV--EACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNG  320 (429)
Q Consensus       245 ~-~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~L~~l~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~  320 (429)
                      + ..++-++.+|+.|++++|.|..+..  ..+..+|+.|+|++|.++.+++ .|..+..|++|+++.|.+..+.+..|.|
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~  363 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG  363 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence            5 3455666777777777777664433  3344457777777777777633 4666667777777777776666655554


Q ss_pred             CcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChh-hhccCCCcEEeCCCCcccc-CChh
Q 014200          321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQE-LPPE  398 (429)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~-~~~~~~L~~L~ls~n~i~~-~~~~  398 (429)
                      ...  ++-+  -+....++++..+    .+..+...+.|+.|++.||+++.+|.- +..+++|+.|||.+|.|.. -|.+
T Consensus       364 lss--L~~L--dLr~N~ls~~IED----aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA  435 (873)
T KOG4194|consen  364 LSS--LHKL--DLRSNELSWCIED----AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA  435 (873)
T ss_pred             hhh--hhhh--cCcCCeEEEEEec----chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence            221  1111  1111112222222    334455567889999999999988764 5588999999999999887 6777


Q ss_pred             hcccccceeeccccCCCccccccccccccc
Q 014200          399 LSSCASLQVKFSDLVTNKESCISGCYLYWN  428 (429)
Q Consensus       399 l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~  428 (429)
                      |..+ .|++|-  +..-+|-|  ||-++|+
T Consensus       436 Fe~m-~Lk~Lv--~nSssflC--DCql~Wl  460 (873)
T KOG4194|consen  436 FEPM-ELKELV--MNSSSFLC--DCQLKWL  460 (873)
T ss_pred             cccc-hhhhhh--hcccceEE--eccHHHH
Confidence            8877 888887  66655555  8998885

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3e-36  Score=276.06  Aligned_cols=368  Identities=23%  Similarity=0.267  Sum_probs=296.5

Q ss_pred             cCC-ccEEEcCCCCCCccchh-ccC-C-CCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCccCCccccCCCCcCE
Q 014200           44 AVD-LQKLILAHNNIEKLKED-LRN-L-PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVK  118 (429)
Q Consensus        44 ~~~-L~~L~l~~~~i~~l~~~-~~~-~-~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~  118 (429)
                      |+. -+.|+.+++.+..+... +.. + +.-+.|++++|.+.++ +..|.++++|+.+++.+|.++.+|.......+++.
T Consensus        50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~  129 (873)
T KOG4194|consen   50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEK  129 (873)
T ss_pred             CCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeE
Confidence            443 45578888877765321 222 2 3456799999999977 45789999999999999999999997777888999


Q ss_pred             EecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccCCcccccChhhhhcccccceeecCCccC
Q 014200          119 FDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (429)
Q Consensus       119 L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  196 (429)
                      |++.+|.+.++. +.+..++.|+.++++.|.+++++. .|..-.++++|++++|.++++..+.|..+.+|.++.+++|++
T Consensus       130 L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNri  209 (873)
T KOG4194|consen  130 LDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRI  209 (873)
T ss_pred             EeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcc
Confidence            999999999774 467888999999999999998764 466668999999999999999999999999999999999999


Q ss_pred             CcCCc-cccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCccC-hhhcCCCCCCEEECCCCcCccccchhh
Q 014200          197 NGMPE-TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEAC  273 (429)
Q Consensus       197 ~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~  273 (429)
                      +.+|. .|.++++|+.|++..|.+..+ ...|.++++|+.|.+..|.+..+- ..|..+.++++|++..|++..+.....
T Consensus       210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l  289 (873)
T KOG4194|consen  210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL  289 (873)
T ss_pred             cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence            99875 466799999999999999866 578999999999999999999774 458889999999999999997765533


Q ss_pred             c--cccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHh
Q 014200          274 Q--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (429)
Q Consensus       274 ~--~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (429)
                      -  ..|++|++++|.|..+ ++.+..+++|++|++++|.|+++++..|.+.     +.++.      +............
T Consensus       290 fgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-----~~Le~------LnLs~Nsi~~l~e  358 (873)
T KOG4194|consen  290 FGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-----SQLEE------LNLSHNSIDHLAE  358 (873)
T ss_pred             cccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH-----HHhhh------hcccccchHHHHh
Confidence            2  3499999999999995 6678899999999999999999887765542     22211      1222233334445


Q ss_pred             hhhccccccccccccCCccc----cCChhhhccCCCcEEeCCCCccccCCh-hhcccccceeeccccCCCccccccccc
Q 014200          351 MATRLSVTSKELSLEGMNLS----AIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLVTNKESCISGCY  424 (429)
Q Consensus       351 ~~~~~~~~L~~l~l~~~~i~----~~~~~~~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~~n~i~~i~~~~  424 (429)
                      ..+...++|+.|||++|.++    .-...+..++.|+.|++.||++..+|. ++.+++.|+.||  |.+|.|..|-...
T Consensus       359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld--L~~NaiaSIq~nA  435 (873)
T KOG4194|consen  359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD--LGDNAIASIQPNA  435 (873)
T ss_pred             hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec--CCCCcceeecccc
Confidence            55667788999999999888    222344578999999999999998664 688999999999  9999988865443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.4e-36  Score=263.06  Aligned_cols=397  Identities=25%  Similarity=0.319  Sum_probs=221.9

Q ss_pred             HhhhcCeeeccCCCCccCChhhhhh--hccc--------cCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECC
Q 014200            7 AARTSGSLNLSNRSLRDVPNEVYKN--FDEA--------GEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVS   76 (429)
Q Consensus         7 ~~~~l~~L~l~~~~l~~~~~~~~~~--~~~~--------~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~   76 (429)
                      ....+++++..++++...|+.+.+-  +..+        .-+++.+...+++.++++++.+..+++++..+..++.++-.
T Consensus        66 nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~  145 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT  145 (565)
T ss_pred             cccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence            3444555556666655555544321  0000        11233333455555555555555555555555555555555


Q ss_pred             CCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccc
Q 014200           77 HNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDL  156 (429)
Q Consensus        77 ~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l  156 (429)
                      +|.+..+|+++.++.+|..+++.+|.+..+|+..-+++.|++++...|-+..+|..++.+.+|..|++..|.+..+| .|
T Consensus       146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef  224 (565)
T KOG0472|consen  146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EF  224 (565)
T ss_pred             ccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CC
Confidence            55555555555555555555555555555554444455555555555555555555555555555555555555555 45


Q ss_pred             cccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEE
Q 014200          157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY  236 (429)
Q Consensus       157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  236 (429)
                      ..|..|+++++..|.+..++......++++.++++++|+++++|+.+.-+++|..|++++|.++.+|..++++ +|+.|.
T Consensus       225 ~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~  303 (565)
T KOG0472|consen  225 PGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLA  303 (565)
T ss_pred             CccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehh
Confidence            5555566666655555555555555556666666666666666665555566666666666666666656555 566555


Q ss_pred             cCCCCCCcc--------------------------------------C----hhhcCCCCCCEEECCCCcCccccchhhc
Q 014200          237 MGNNALSAL--------------------------------------P----AELGKLSKLGTLDLHSNQLKEYCVEACQ  274 (429)
Q Consensus       237 l~~n~i~~~--------------------------------------~----~~~~~~~~L~~L~l~~n~l~~~~~~~~~  274 (429)
                      +.+|.+..+                                      +    +.....-+.+.|++++-+++.+|.+.+.
T Consensus       304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe  383 (565)
T KOG0472|consen  304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE  383 (565)
T ss_pred             hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence            555442100                                      0    0011122344444444444444433332


Q ss_pred             cc----cCEEEccCCCCCCC------------------------CccccCCCCCCEEEccCCCCCCccccccCCCcHHHH
Q 014200          275 LR----LSVLDLSNNSLSGL------------------------PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL  326 (429)
Q Consensus       275 ~~----L~~l~l~~n~l~~l------------------------~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~  326 (429)
                      .-    +..+++++|++..+                        |..+..+++|..|++++|.+.++|...+.--.   +
T Consensus       384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~---L  460 (565)
T KOG0472|consen  384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVR---L  460 (565)
T ss_pred             HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhh---h
Confidence            21    44445554444433                        33455567788888888888777755322111   1


Q ss_pred             HHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChh-hhccCCCcEEeCCCCccccCChhhcccccc
Q 014200          327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPELSSCASL  405 (429)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~-~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L  405 (429)
                      +.+       .++..  .+.. .-........++.+-.+++++.++++. +..+.+|+.||+.+|++..+|..+++|.+|
T Consensus       461 q~L-------nlS~N--rFr~-lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL  530 (565)
T KOG0472|consen  461 QTL-------NLSFN--RFRM-LPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNL  530 (565)
T ss_pred             hee-------ccccc--cccc-chHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccce
Confidence            110       00000  0000 001111223456666677888877655 888999999999999999999999999999


Q ss_pred             eeeccccCCCcccccc
Q 014200          406 QVKFSDLVTNKESCIS  421 (429)
Q Consensus       406 ~~L~~~l~~n~i~~i~  421 (429)
                      ++|+  +.+|+|. .|
T Consensus       531 ~hLe--L~gNpfr-~P  543 (565)
T KOG0472|consen  531 RHLE--LDGNPFR-QP  543 (565)
T ss_pred             eEEE--ecCCccC-CC
Confidence            9999  9999998 44

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=1.1e-34  Score=268.18  Aligned_cols=365  Identities=27%  Similarity=0.384  Sum_probs=315.7

Q ss_pred             hhhcCeeeccCCCCc--cCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch
Q 014200            8 ARTSGSLNLSNRSLR--DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (429)
Q Consensus         8 ~~~l~~L~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~   85 (429)
                      .+.++-.|+++|.+.  .+|..+..             +..++.|.+...++..+|+.++.+.+|+.|.+++|.+..+-.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~q-------------Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhG   72 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQ-------------MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHG   72 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHH-------------hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhh
Confidence            456788999999875  56665544             677999999999999999999999999999999999998888


Q ss_pred             hhhCCCCCcEeecCCCcCc--cCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCcc-ccccCCC
Q 014200           86 AIGELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKM  162 (429)
Q Consensus        86 ~l~~l~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L  162 (429)
                      .++.+|.|+.+.+..|++.  .+|+.+..+..|..|+++.|++...|..+....++-.|+++.|++.++|.. +-++..|
T Consensus        73 ELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL  152 (1255)
T KOG0444|consen   73 ELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL  152 (1255)
T ss_pred             hhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence            8999999999999999876  789999999999999999999999999999999999999999999999876 5678899


Q ss_pred             cEEEccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCc--cCCccccccCCCcEEEcCC
Q 014200          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGN  239 (429)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~l~~  239 (429)
                      -.||++.|.+..+|+. ...+..|++|++++|.+... -..+..+++|+.|.++++.-+  .+|.++..+.+|..++++.
T Consensus       153 LfLDLS~NrLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~  231 (1255)
T KOG0444|consen  153 LFLDLSNNRLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE  231 (1255)
T ss_pred             hhhccccchhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc
Confidence            9999999999999886 78899999999999988543 233456678888999988654  7899999999999999999


Q ss_pred             CCCCccChhhcCCCCCCEEECCCCcCccccchhhccc-cCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCcccccc
Q 014200          240 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV  318 (429)
Q Consensus       240 n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~  318 (429)
                      |.+..+|+.+..+++|+.|++++|.++.+......+. +++|+++.|+++.+|..+.+++.|+.|.+.+|+++-      
T Consensus       232 N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F------  305 (1255)
T KOG0444|consen  232 NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF------  305 (1255)
T ss_pred             cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc------
Confidence            9999999999999999999999999998776665554 999999999999999999999999999999998752      


Q ss_pred             CCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChh
Q 014200          319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE  398 (429)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~  398 (429)
                      .| +|..+.-+                           .+|+.+..++|.+.-+|+.+..|+.|+.|.|++|.+-.+|++
T Consensus       306 eG-iPSGIGKL---------------------------~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPea  357 (1255)
T KOG0444|consen  306 EG-IPSGIGKL---------------------------IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEA  357 (1255)
T ss_pred             cC-Cccchhhh---------------------------hhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhh
Confidence            22 22222211                           367888889999999999999999999999999999999999


Q ss_pred             hcccccceeeccccCCCccccccc
Q 014200          399 LSSCASLQVKFSDLVTNKESCISG  422 (429)
Q Consensus       399 l~~l~~L~~L~~~l~~n~i~~i~~  422 (429)
                      +.-++-|+.||  +..|+=--.|+
T Consensus       358 IHlL~~l~vLD--lreNpnLVMPP  379 (1255)
T KOG0444|consen  358 IHLLPDLKVLD--LRENPNLVMPP  379 (1255)
T ss_pred             hhhcCCcceee--ccCCcCccCCC
Confidence            99999999999  99998554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.2e-33  Score=261.13  Aligned_cols=343  Identities=24%  Similarity=0.327  Sum_probs=309.4

Q ss_pred             cCCccEEEcCCCCCC--ccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEec
Q 014200           44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l  121 (429)
                      ++-++-+++++|.+.  ..|.++..+.+++.|.+....+..+|+.++.+.+|++|.+.+|++.++...+..++.|+.+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence            455788999999887  789899999999999999999999999999999999999999999988788889999999999


Q ss_pred             CCCCCC--cCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcC
Q 014200          122 SSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (429)
Q Consensus       122 ~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  199 (429)
                      ..|++.  .+|..+.++..|..|+++.|++.+.|..+....++-.|++++|.+..+|...+.+++.|-.|++++|+++.+
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~L  165 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEML  165 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhc
Confidence            999887  789999999999999999999999999999999999999999999999999899999999999999999999


Q ss_pred             CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCC--ccChhhcCCCCCCEEECCCCcCccccchhhccc
Q 014200          200 PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR  276 (429)
Q Consensus       200 ~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  276 (429)
                      |+....+..|+.|.+++|++.-. ..-+..+++|+.|.+++.+-+  .+|..+..+.+|..++++.|.+..+|.......
T Consensus       166 PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~  245 (1255)
T KOG0444|consen  166 PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR  245 (1255)
T ss_pred             CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh
Confidence            99999999999999999988622 233556888999999988655  789999999999999999999999988877655


Q ss_pred             -cCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200          277 -LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL  355 (429)
Q Consensus       277 -L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (429)
                       |++|++++|+|+.+....+.-.+|+.|+++.|.++.+|...+.-                                   
T Consensus       246 ~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL-----------------------------------  290 (1255)
T KOG0444|consen  246 NLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKL-----------------------------------  290 (1255)
T ss_pred             hhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhh-----------------------------------
Confidence             99999999999998766666678999999999998776543321                                   


Q ss_pred             ccccccccccCCccc--cCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccccc
Q 014200          356 SVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCY  424 (429)
Q Consensus       356 ~~~L~~l~l~~~~i~--~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~  424 (429)
                       +.|+.|.+.+|+++  .+|++++.+.+|+.+..++|.+.-+|+.++.|++|+.|.  |+.|.+-.+|+.+
T Consensus       291 -~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~--L~~NrLiTLPeaI  358 (1255)
T KOG0444|consen  291 -TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLK--LDHNRLITLPEAI  358 (1255)
T ss_pred             -HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhc--ccccceeechhhh
Confidence             46789999999988  899999999999999999999999999999999999999  9999988888754

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-30  Score=248.30  Aligned_cols=384  Identities=24%  Similarity=0.283  Sum_probs=251.9

Q ss_pred             cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCC
Q 014200           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGEL   90 (429)
Q Consensus        11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l   90 (429)
                      ++.|++++|-+-+-|-...+.            +.+|+.|+++.|.+...|..+..+.+|+.|+++.|.|..+|....++
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~------------~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~   90 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEK------------RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM   90 (1081)
T ss_pred             HHhhhccccccccCchHHhhh------------eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence            555566665555544322222            33466666666666666666666666666666666666666666666


Q ss_pred             CCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCC-------------------ccc-
Q 014200           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN-------------------CIT-  150 (429)
Q Consensus        91 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~-------------------~~~-  150 (429)
                      .+|+++++.+|.+..+|..+..+.+|++|+++.|.+..+|..+..++.+..+..++|                   .+. 
T Consensus        91 ~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~  170 (1081)
T KOG0618|consen   91 RNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGG  170 (1081)
T ss_pred             hcchhheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhccc
Confidence            666666666666666666666666666666666666655555555544444444444                   332 


Q ss_pred             cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccC
Q 014200          151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC  230 (429)
Q Consensus       151 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  230 (429)
                      .++.....+..  .+++++|.+...   .+..+..++.+....|++..+.   ...++++.|..+.|.++.... .....
T Consensus       171 ~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c~rn~ls~l~---~~g~~l~~L~a~~n~l~~~~~-~p~p~  241 (1081)
T KOG0618|consen  171 SFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHCERNQLSELE---ISGPSLTALYADHNPLTTLDV-HPVPL  241 (1081)
T ss_pred             chhcchhhhhe--eeecccchhhhh---hhhhccchhhhhhhhcccceEE---ecCcchheeeeccCcceeecc-ccccc
Confidence            22333333333  488888877622   2567778888888887775442   245778889999988874322 23456


Q ss_pred             CCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccc-cCEEEccCCCCCCCCccccCCCCCCEEEccCCC
Q 014200          231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP  309 (429)
Q Consensus       231 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~  309 (429)
                      ++++++++.+.++.+|+|+..+.+|+.++..+|.++.++...+... |+.+.+..|.+..+|+...+.++|+.|++..|.
T Consensus       242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~  321 (1081)
T KOG0618|consen  242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN  321 (1081)
T ss_pred             cceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence            8999999999999999999999999999999999998887776655 999999999999999999999999999999999


Q ss_pred             CCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc-cCChhhhccCCCcEEeCC
Q 014200          310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLS  388 (429)
Q Consensus       310 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls  388 (429)
                      +..+|+..+.- ....+..+.......  +..+...+       ...+.|..|++.+|.++ ..-..+..+++|+.|+|+
T Consensus       322 L~~lp~~~l~v-~~~~l~~ln~s~n~l--~~lp~~~e-------~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  322 LPSLPDNFLAV-LNASLNTLNVSSNKL--STLPSYEE-------NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLS  391 (1081)
T ss_pred             ccccchHHHhh-hhHHHHHHhhhhccc--cccccccc-------hhhHHHHHHHHhcCcccccchhhhccccceeeeeec
Confidence            99988754432 233333333211111  11111111       12245677777777777 333355567777777777


Q ss_pred             CCccccCChh-hcccccceeeccccCCCcccccccccccc
Q 014200          389 RNSIQELPPE-LSSCASLQVKFSDLVTNKESCISGCYLYW  427 (429)
Q Consensus       389 ~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~i~~~~~~~  427 (429)
                      +|++..+|.. +.++..|++|+  ||+|+++.+|+|+..|
T Consensus       392 yNrL~~fpas~~~kle~LeeL~--LSGNkL~~Lp~tva~~  429 (1081)
T KOG0618|consen  392 YNRLNSFPASKLRKLEELEELN--LSGNKLTTLPDTVANL  429 (1081)
T ss_pred             ccccccCCHHHHhchHHhHHHh--cccchhhhhhHHHHhh
Confidence            7777776653 55677777777  7777777777777666

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.92  E-value=2.8e-27  Score=228.26  Aligned_cols=378  Identities=29%  Similarity=0.330  Sum_probs=200.2

Q ss_pred             HHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc
Q 014200            4 ILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL   83 (429)
Q Consensus         4 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~   83 (429)
                      +..++-+|+.||+++|++.++|..+-.             ..+|+.|+++.|.+...|....++.+|+++.|.+|.+..+
T Consensus        40 ~~~~~v~L~~l~lsnn~~~~fp~~it~-------------l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~l  106 (1081)
T KOG0618|consen   40 FVEKRVKLKSLDLSNNQISSFPIQITL-------------LSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSL  106 (1081)
T ss_pred             HhhheeeeEEeeccccccccCCchhhh-------------HHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcC
Confidence            445566799999999999999887755             4568888888888888887778888888888888888888


Q ss_pred             chhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCC-------------------CCC-cCCccccCCCCCCEEE
Q 014200           84 PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN-------------------QLK-ELPSSLGRCLNLSDFK  143 (429)
Q Consensus        84 ~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~-------------------~l~-~~~~~~~~~~~L~~L~  143 (429)
                      |..+..+.+|++|++++|.+..+|..+..+..+.++..++|                   .+. .++..+..+..  .++
T Consensus       107 P~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ld  184 (1081)
T KOG0618|consen  107 PASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLD  184 (1081)
T ss_pred             chhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eee
Confidence            88888888888888888877766654443333333333322                   111 11111111111  244


Q ss_pred             cCCCccccCCcccccc--------------------CCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200          144 ASNNCITSLPEDLADC--------------------SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (429)
Q Consensus       144 l~~~~~~~~~~~l~~~--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  203 (429)
                      +..|.+..+  .+..+                    ++++.|+.+.|.++....  -..-.+++.++++.+++..+|.|+
T Consensus       185 Lr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi  260 (1081)
T KOG0618|consen  185 LRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWI  260 (1081)
T ss_pred             cccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHH
Confidence            444433310  01111                    223333333333221111  011123444555555555555444


Q ss_pred             cCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccch------------
Q 014200          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE------------  271 (429)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------------  271 (429)
                      ..+.+++.+....|.+..+|..+....+|+++.+..|.+..+|+......+|++|++..|.+..++..            
T Consensus       261 ~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~l  340 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTL  340 (1081)
T ss_pred             HhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHH
Confidence            55555555555554444444444444444444444444444444444444444444444443332221            


Q ss_pred             -------------hhc--cccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCC
Q 014200          272 -------------ACQ--LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE  335 (429)
Q Consensus       272 -------------~~~--~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  335 (429)
                                   ...  ..|+.|++.+|.+++ .-+.+.+.++|+.|++++|.+.++|...+..-     .    .++.
T Consensus       341 n~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl-----e----~Lee  411 (1081)
T KOG0618|consen  341 NVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL-----E----ELEE  411 (1081)
T ss_pred             hhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhch-----H----HhHH
Confidence                         111  126666777777766 34446667777777777777765553322210     0    0000


Q ss_pred             CCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcccc--CChhhcccccceeeccccC
Q 014200          336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKFSDLV  413 (429)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~~~l~  413 (429)
                      ..+++.....   +......+..|+.|...+|.+..+| .+..++.|+.+|+|.|+++.  +|+.... |.|++||  ++
T Consensus       412 L~LSGNkL~~---Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd--lS  484 (1081)
T KOG0618|consen  412 LNLSGNKLTT---LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD--LS  484 (1081)
T ss_pred             Hhcccchhhh---hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee--cc
Confidence            0000000000   0011112245566666666666666 56667777777777777775  5554333 6777777  77


Q ss_pred             CCc
Q 014200          414 TNK  416 (429)
Q Consensus       414 ~n~  416 (429)
                      +|.
T Consensus       485 GN~  487 (1081)
T KOG0618|consen  485 GNT  487 (1081)
T ss_pred             CCc
Confidence            776

>PLN03210 Resistant to P

Probab=99.92  E-value=2.5e-23  Score=221.16  Aligned_cols=297  Identities=23%  Similarity=0.272  Sum_probs=145.7

Q ss_pred             CCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCC-CCcCCccccCCCCCCEEEcCCC-
Q 014200           70 LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNN-  147 (429)
Q Consensus        70 L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~-  147 (429)
                      |+.|.+.++.+..+|..+ ...+|++|++.++.+..++..+..+++|++++++++. +..+| .+..+++|++|++++| 
T Consensus       591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS  668 (1153)
T ss_pred             cEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC
Confidence            555555555555554444 3445555555555555555444555555555554432 33333 2444455555555544 


Q ss_pred             ccccCCccccccCCCcEEEccCC-cccccChhhhhcccccceeecCCccC-CcCCccccCCccCCeEeccCCcCccCCcc
Q 014200          148 CITSLPEDLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSS  225 (429)
Q Consensus       148 ~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  225 (429)
                      .+..+|..+..+++|+.|++++| .+..++..  ..+++|+.|++++|.. ..+|.   ...+|+.|+++++.+..+|..
T Consensus       669 ~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~  743 (1153)
T PLN03210        669 SLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSN  743 (1153)
T ss_pred             CccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccccccc
Confidence            23344545555555555555543 23333322  1344555555555432 22222   123455555555555554433


Q ss_pred             ccccCCCcEEEcCCCCCCcc-------C-hhhcCCCCCCEEECCCCcC-ccccchhhc-cccCEEEccCC-CCCCCCccc
Q 014200          226 ISGCCSLAEFYMGNNALSAL-------P-AELGKLSKLGTLDLHSNQL-KEYCVEACQ-LRLSVLDLSNN-SLSGLPPEI  294 (429)
Q Consensus       226 ~~~~~~L~~L~l~~n~i~~~-------~-~~~~~~~~L~~L~l~~n~l-~~~~~~~~~-~~L~~l~l~~n-~l~~l~~~l  294 (429)
                      + .+++|++|.+.++....+       + .....+++|+.|++++|.. ..++..... .+|+.|++++| .+..+|...
T Consensus       744 ~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        744 L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            3 344455554443221111       0 1112234555555555532 223332222 22555555554 344454443


Q ss_pred             cCCCCCCEEEccCCCCC-CccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCC
Q 014200          295 GKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP  373 (429)
Q Consensus       295 ~~~~~L~~L~l~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~  373 (429)
                       .+++|+.|++++|..- .++                                       ..+.+|+.|++++|.++.+|
T Consensus       823 -~L~sL~~L~Ls~c~~L~~~p---------------------------------------~~~~nL~~L~Ls~n~i~~iP  862 (1153)
T PLN03210        823 -NLESLESLDLSGCSRLRTFP---------------------------------------DISTNISDLNLSRTGIEEVP  862 (1153)
T ss_pred             -CccccCEEECCCCCcccccc---------------------------------------ccccccCEeECCCCCCccCh
Confidence             4566666666665321 111                                       01135667777777777777


Q ss_pred             hhhhccCCCcEEeCCCC-ccccCChhhcccccceeeccccCCCc
Q 014200          374 SEIWEAGEITKLDLSRN-SIQELPPELSSCASLQVKFSDLVTNK  416 (429)
Q Consensus       374 ~~~~~~~~L~~L~ls~n-~i~~~~~~l~~l~~L~~L~~~l~~n~  416 (429)
                      ..+..+++|++|++++| ++..+|..+..+++|+.++  +++|.
T Consensus       863 ~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~--l~~C~  904 (1153)
T PLN03210        863 WWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVD--FSDCG  904 (1153)
T ss_pred             HHHhcCCCCCEEECCCCCCcCccCcccccccCCCeee--cCCCc
Confidence            77777777777777775 3555666666667777777  66664

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=1.7e-23  Score=207.66  Aligned_cols=263  Identities=29%  Similarity=0.329  Sum_probs=185.3

Q ss_pred             CCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCc
Q 014200           69 LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC  148 (429)
Q Consensus        69 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  148 (429)
                      .-..|+++++.++.+|..+.  ++|+.|++.+|.++.+|..   .++|++|++++|+++.+|..   .++|+.|++++|.
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~  273 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP  273 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence            45567777777777766553  3677777777777766642   46777777777777766642   3467777777777


Q ss_pred             cccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccc
Q 014200          149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG  228 (429)
Q Consensus       149 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  228 (429)
                      +..+|...   .+|+.|++++|.+..++.    ..++|+.|++++|.++.+|..   ...|+.|.+++|.++.+|..   
T Consensus       274 L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---  340 (788)
T PRK15387        274 LTHLPALP---SGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL---  340 (788)
T ss_pred             hhhhhhch---hhcCEEECcCCccccccc----cccccceeECCCCccccCCCC---cccccccccccCcccccccc---
Confidence            76665422   456677777777776653    235677777777777766542   24567777888877776642   


Q ss_pred             cCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCC
Q 014200          229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN  308 (429)
Q Consensus       229 ~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~  308 (429)
                      ..+|+.|++++|.++.+|..   .++|+.|++++|.+..++..  +.+|+.|++++|.++.+|...   ++|+.|++++|
T Consensus       341 p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~N  412 (788)
T PRK15387        341 PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLP---SELKELMVSGN  412 (788)
T ss_pred             ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcc---cCCCEEEccCC
Confidence            24788888888888877653   34677788888888876643  345888888888888877533   57888899998


Q ss_pred             CCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCC
Q 014200          309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS  388 (429)
Q Consensus       309 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls  388 (429)
                      .++.+|..                                       +.+|+.|++++|+|+.+|..+..+++|+.|+|+
T Consensus       413 ~LssIP~l---------------------------------------~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        413 RLTSLPML---------------------------------------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             cCCCCCcc---------------------------------------hhhhhhhhhccCcccccChHHhhccCCCeEECC
Confidence            88766521                                       124577889999999999888889999999999


Q ss_pred             CCcccc-CChhh
Q 014200          389 RNSIQE-LPPEL  399 (429)
Q Consensus       389 ~n~i~~-~~~~l  399 (429)
                      +|.+++ .+..+
T Consensus       454 ~N~Ls~~~~~~L  465 (788)
T PRK15387        454 GNPLSERTLQAL  465 (788)
T ss_pred             CCCCCchHHHHH
Confidence            999887 66655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=1.6e-23  Score=207.88  Aligned_cols=259  Identities=27%  Similarity=0.315  Sum_probs=216.1

Q ss_pred             CCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCC
Q 014200           91 HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (429)
Q Consensus        91 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  170 (429)
                      ..-..|+++++.++.+|+.+.  ++|+.|++.+|+++.+|..   .++|++|++++|.++.+|..   .++|+.|++++|
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence            456789999999999998765  4899999999999998863   57899999999999988753   468999999999


Q ss_pred             cccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhc
Q 014200          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG  250 (429)
Q Consensus       171 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~  250 (429)
                      .+..++.    ....|+.|++++|.++.+|..   +++|+.|++++|.+..+|..   ...|+.|++++|.++.+|..  
T Consensus       273 ~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l--  340 (788)
T PRK15387        273 PLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL--  340 (788)
T ss_pred             chhhhhh----chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC---cccccccccccCcccccccc--
Confidence            8887654    235788999999999888753   47899999999999988753   34688899999999988752  


Q ss_pred             CCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHH
Q 014200          251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR  330 (429)
Q Consensus       251 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~  330 (429)
                       .++|+.|++++|.++.++..  +.+++.|++++|.++.+|..   ..+|+.|++++|.++.+|..              
T Consensus       341 -p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l--------------  400 (788)
T PRK15387        341 -PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL--------------  400 (788)
T ss_pred             -ccccceEecCCCccCCCCCC--CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc--------------
Confidence             25899999999999988753  45699999999999988764   35799999999998765521              


Q ss_pred             hcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeecc
Q 014200          331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFS  410 (429)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~  410 (429)
                                               +++|+.|++++|.++.+|..   ..+|+.|++++|+|+.+|+.+.++++|+.|+ 
T Consensus       401 -------------------------~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld-  451 (788)
T PRK15387        401 -------------------------PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVN-  451 (788)
T ss_pred             -------------------------ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEE-
Confidence                                     13679999999999999864   3578999999999999999999999999999 


Q ss_pred             ccCCCcccc
Q 014200          411 DLVTNKESC  419 (429)
Q Consensus       411 ~l~~n~i~~  419 (429)
                       +++|++++
T Consensus       452 -Ls~N~Ls~  459 (788)
T PRK15387        452 -LEGNPLSE  459 (788)
T ss_pred             -CCCCCCCc
Confidence             99999997

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.91  E-value=2.7e-26  Score=201.84  Aligned_cols=261  Identities=24%  Similarity=0.315  Sum_probs=190.6

Q ss_pred             eeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhhhCC
Q 014200           13 SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGEL   90 (429)
Q Consensus        13 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~~l   90 (429)
                      ..|+++-+++.||..+++.               .+.++|..|+|+.||+ +|+.+++|++||+++|.|..+ |.+|+++
T Consensus        50 ~VdCr~~GL~eVP~~LP~~---------------tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL  114 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPE---------------TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL  114 (498)
T ss_pred             eEEccCCCcccCcccCCCc---------------ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhh
Confidence            5678888899999988664               6788999999999987 699999999999999999977 6699999


Q ss_pred             CCCcEeecCC-CcCccCCcc-ccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEE
Q 014200           91 HMLKSLDVSF-NSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLD  166 (429)
Q Consensus        91 ~~L~~L~l~~-~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~  166 (429)
                      ++|..|.+.+ |+|+.+|.. |+++..++-|.+.-+++..+. +.+..++++..|.+.+|.+..++. .|..+..++.+.
T Consensus       115 ~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  115 ASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH  194 (498)
T ss_pred             HhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence            9998888766 799988765 788888888888888887664 467888888889999988887766 577777788877


Q ss_pred             ccCCccc------cc------ChhhhhcccccceeecCC-------------------------ccCC-cCC-ccccCCc
Q 014200          167 VEGNKLT------VL------SNNLIASWTMLTELIASK-------------------------NLLN-GMP-ETIGSLS  207 (429)
Q Consensus       167 l~~~~~~------~~------~~~~~~~~~~L~~L~l~~-------------------------~~l~-~~~-~~~~~~~  207 (429)
                      +..|.+.      ..      .+..++++....-..+.+                         +... ..| ..+..++
T Consensus       195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~  274 (498)
T KOG4237|consen  195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLP  274 (498)
T ss_pred             hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcc
Confidence            7766522      00      001111211111111111                         1111 112 2467788


Q ss_pred             cCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhhccc--cCEEEcc
Q 014200          208 RLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLS  283 (429)
Q Consensus       208 ~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--L~~l~l~  283 (429)
                      +|+.|++++|+++.+ +.+|.+...+++|.+..|.+..+ ...|..+..|++|++.+|+|+.+.+.++..-  |.++++-
T Consensus       275 ~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  275 NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehc
Confidence            888888888888866 56788888888888888888766 3457888888888888888887777766643  8888887


Q ss_pred             CCCCC
Q 014200          284 NNSLS  288 (429)
Q Consensus       284 ~n~l~  288 (429)
                      .|.+.
T Consensus       355 ~Np~~  359 (498)
T KOG4237|consen  355 SNPFN  359 (498)
T ss_pred             cCccc
Confidence            66543

>PLN03210 Resistant to P

Probab=99.87  E-value=1.6e-20  Score=199.97  Aligned_cols=331  Identities=21%  Similarity=0.267  Sum_probs=244.1

Q ss_pred             hHHHHHhhhcCeeeccCCCCc-------cCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEE
Q 014200            2 DRILKAARTSGSLNLSNRSLR-------DVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLN   74 (429)
Q Consensus         2 ~~~~~~~~~l~~L~l~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~   74 (429)
                      ..+|+++++|+.|.+..+...       .+|.....-            ..+|+.|.+.++.++.+|..| ...+|+.|+
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l------------p~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~  617 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL------------PPKLRLLRWDKYPLRCMPSNF-RPENLVKLQ  617 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhc------------CcccEEEEecCCCCCCCCCcC-CccCCcEEE
Confidence            368999999999999765432       233322111            235899999999889998877 468999999


Q ss_pred             CCCCCCCCcchhhhCCCCCcEeecCCC-cCccCCccccCCCCcCEEecCCCC-CCcCCccccCCCCCCEEEcCCC-cccc
Q 014200           75 VSHNKLSELPAAIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFDCSSNQ-LKELPSSLGRCLNLSDFKASNN-CITS  151 (429)
Q Consensus        75 l~~~~i~~~~~~l~~l~~L~~L~l~~~-~i~~l~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~~-~~~~  151 (429)
                      +.++.+..++..+..+++|++|+++++ .+..+|. +..+++|++|++.+|. +..+|..+..+++|+.|++++| .+..
T Consensus       618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~  696 (1153)
T PLN03210        618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEI  696 (1153)
T ss_pred             CcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCc
Confidence            999999888888888999999999877 4666764 7778999999998864 5678888889999999999986 5667


Q ss_pred             CCccccccCCCcEEEccCCcc-cccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC--------
Q 014200          152 LPEDLADCSKMSKLDVEGNKL-TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI--------  222 (429)
Q Consensus       152 ~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~--------  222 (429)
                      +|..+ .+++|+.|++++|.. ..++.    ...+|++|+++++.++.+|..+ .+++|+.|.+.++....+        
T Consensus       697 Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~  770 (1153)
T PLN03210        697 LPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLT  770 (1153)
T ss_pred             cCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccc
Confidence            77655 678999999988743 23322    2357888999999888887654 577888888876443221        


Q ss_pred             CccccccCCCcEEEcCCCC-CCccChhhcCCCCCCEEECCCC-cCccccchhhccccCEEEccCCC-CCCCCccccCCCC
Q 014200          223 PSSISGCCSLAEFYMGNNA-LSALPAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVLDLSNNS-LSGLPPEIGKMTT  299 (429)
Q Consensus       223 ~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~L~~l~l~~n~-l~~l~~~l~~~~~  299 (429)
                      +.....+++|+.|++++|. +..+|..++.+++|+.|++++| .+..++......+|+.|++++|. +..+|..   .++
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~n  847 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STN  847 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccc
Confidence            1123345788899998884 5578888888999999999886 46666665555568999998874 3445442   357


Q ss_pred             CCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCC-ccccCChhhhc
Q 014200          300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGM-NLSAIPSEIWE  378 (429)
Q Consensus       300 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~i~~~~~~~~~  378 (429)
                      |+.|++++|.++++|...                                    ...++|+.|++++| ++..+|..+..
T Consensus       848 L~~L~Ls~n~i~~iP~si------------------------------------~~l~~L~~L~L~~C~~L~~l~~~~~~  891 (1153)
T PLN03210        848 ISDLNLSRTGIEEVPWWI------------------------------------EKFSNLSFLDMNGCNNLQRVSLNISK  891 (1153)
T ss_pred             cCEeECCCCCCccChHHH------------------------------------hcCCCCCEEECCCCCCcCccCccccc
Confidence            888999998887655321                                    11247788888885 56678877778


Q ss_pred             cCCCcEEeCCCCc
Q 014200          379 AGEITKLDLSRNS  391 (429)
Q Consensus       379 ~~~L~~L~ls~n~  391 (429)
                      ++.|+.+++++|.
T Consensus       892 L~~L~~L~l~~C~  904 (1153)
T PLN03210        892 LKHLETVDFSDCG  904 (1153)
T ss_pred             ccCCCeeecCCCc
Confidence            8888888888884

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.86  E-value=7.7e-21  Score=189.95  Aligned_cols=246  Identities=25%  Similarity=0.378  Sum_probs=191.9

Q ss_pred             CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCC
Q 014200           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~  125 (429)
                      +.+.|++++++++.+|..+.  ++++.|++++|.++.+|..+.  ++|++|++++|.+..+|..+.  ++|+.|++++|.
T Consensus       179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~  252 (754)
T PRK15370        179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR  252 (754)
T ss_pred             CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence            46778888888887776553  478888888888888876543  578888888888888776543  468888888888


Q ss_pred             CCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccC
Q 014200          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (429)
Q Consensus       126 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  205 (429)
                      +..+|..+.  .+|+.|++++|.++.+|..+.  ++|+.|++++|.++.++.. +  .+.|+.|++++|.++.+|..+  
T Consensus       253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP~~l--  323 (754)
T PRK15370        253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAH-L--PSGITHLNVQSNSLTALPETL--  323 (754)
T ss_pred             cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCccc-c--hhhHHHHHhcCCccccCCccc--
Confidence            888776553  478888888888887776553  4788889988888876643 1  246888889999888777544  


Q ss_pred             CccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCC
Q 014200          206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (429)
Q Consensus       206 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n  285 (429)
                      .++|+.|++++|.++.+|..+  +++|+.|++++|.++.+|..+.  ++|+.|++++|.++.++... +..|+.|++++|
T Consensus       324 ~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N  398 (754)
T PRK15370        324 PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENL-PAALQIMQASRN  398 (754)
T ss_pred             cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCCCHhH-HHHHHHHhhccC
Confidence            368999999999998887655  3789999999999998887653  68999999999999887653 346999999999


Q ss_pred             CCCCCCcccc----CCCCCCEEEccCCCCC
Q 014200          286 SLSGLPPEIG----KMTTLRKLLLTGNPLR  311 (429)
Q Consensus       286 ~l~~l~~~l~----~~~~L~~L~l~~~~i~  311 (429)
                      +++.+|..+.    .++.+..+++.+|++.
T Consensus       399 ~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        399 NLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             CcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            9998876543    3578899999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=1.3e-20  Score=188.22  Aligned_cols=247  Identities=26%  Similarity=0.401  Sum_probs=205.3

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhh
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~   88 (429)
                      ++.+.|++++++++++|..+.               ++++.|++++|.++.+|..+.  ++|+.|++++|.++.+|..+.
T Consensus       178 ~~~~~L~L~~~~LtsLP~~Ip---------------~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~  240 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACIP---------------EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP  240 (754)
T ss_pred             cCceEEEeCCCCcCcCCcccc---------------cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh
Confidence            456789999999999998664               358999999999999987654  589999999999998887653


Q ss_pred             CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEcc
Q 014200           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~  168 (429)
                        ++|+.|++++|.+..+|..+.  .+|++|++++|++..+|..+.  ++|+.|++++|.++.+|..+.  ++|+.|+++
T Consensus       241 --~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        241 --DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQ  312 (754)
T ss_pred             --ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhc
Confidence              479999999999999988764  589999999999998887653  589999999999998876553  478999999


Q ss_pred             CCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChh
Q 014200          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (429)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  248 (429)
                      +|.+..++..   ..++|+.|++++|.++.+|..+.  ++|+.|++++|.+..+|..+  .++|+.|++++|.++.+|+.
T Consensus       313 ~N~Lt~LP~~---l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~  385 (754)
T PRK15370        313 SNSLTALPET---LPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPEN  385 (754)
T ss_pred             CCccccCCcc---ccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHh
Confidence            9999877653   23689999999999988887553  78999999999999887655  46899999999999999877


Q ss_pred             hcCCCCCCEEECCCCcCccccchhhc-----cccCEEEccCCCCCC
Q 014200          249 LGKLSKLGTLDLHSNQLKEYCVEACQ-----LRLSVLDLSNNSLSG  289 (429)
Q Consensus       249 ~~~~~~L~~L~l~~n~l~~~~~~~~~-----~~L~~l~l~~n~l~~  289 (429)
                      +.  ..|+.|++++|.+..++.....     +.+..+++.+|.++.
T Consensus       386 l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        386 LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            65  3799999999999877653221     347899999998863

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.81  E-value=1.3e-21  Score=172.65  Aligned_cols=288  Identities=23%  Similarity=0.321  Sum_probs=164.6

Q ss_pred             CCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCC-CCCCcCCccccCCCCCCEEEcCC
Q 014200           70 LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS-NQLKELPSSLGRCLNLSDFKASN  146 (429)
Q Consensus        70 L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~L~~L~l~~  146 (429)
                      -+.++|..|.|+.+|+ +|+.+++|+.|++++|.|+.| |++|.+++++..+-+.+ |+|+.+|.               
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k---------------  133 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK---------------  133 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh---------------
Confidence            3444555555555543 455555555555555555444 33344444443333322 44444432               


Q ss_pred             CccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc-cccCCccCCeEeccCCcCccCCcc
Q 014200          147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSS  225 (429)
Q Consensus       147 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~  225 (429)
                             ..|..+..++.|.+.-|.+..+....+..++.+..|.+.+|.+..++. .+..+..++.+.+..|++...   
T Consensus       134 -------~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd---  203 (498)
T KOG4237|consen  134 -------GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD---  203 (498)
T ss_pred             -------hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc---
Confidence                   124445555555555555555555555566666666666665555543 455555566665555542211   


Q ss_pred             ccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEE---EccCCCCCC-CC-ccccCCCCC
Q 014200          226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVL---DLSNNSLSG-LP-PEIGKMTTL  300 (429)
Q Consensus       226 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l---~l~~n~l~~-l~-~~l~~~~~L  300 (429)
                       .+.+.+.....      ..+..++.........+.+.++..+....+...++.+   ..+.+...+ .| ..|+++++|
T Consensus       204 -CnL~wla~~~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L  276 (498)
T KOG4237|consen  204 -CNLPWLADDLA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL  276 (498)
T ss_pred             -cccchhhhHHh------hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence             00111000000      0011111111122222233333333222222221111   112222333 23 248999999


Q ss_pred             CEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhh-cc
Q 014200          301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EA  379 (429)
Q Consensus       301 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~-~~  379 (429)
                      +.+++++|.++.+.+.+|.|..                                   .+++|.+..|+|..+-+.++ ++
T Consensus       277 ~~lnlsnN~i~~i~~~aFe~~a-----------------------------------~l~eL~L~~N~l~~v~~~~f~~l  321 (498)
T KOG4237|consen  277 RKLNLSNNKITRIEDGAFEGAA-----------------------------------ELQELYLTRNKLEFVSSGMFQGL  321 (498)
T ss_pred             eEeccCCCccchhhhhhhcchh-----------------------------------hhhhhhcCcchHHHHHHHhhhcc
Confidence            9999999999999999988864                                   67899999999998877766 78


Q ss_pred             CCCcEEeCCCCcccc-CChhhcccccceeeccccCCCccccccccccccc
Q 014200          380 GEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESCISGCYLYWN  428 (429)
Q Consensus       380 ~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~  428 (429)
                      .+|+.|+|.+|+|+. -|-+|..+.+|.+|+  +-.|++-|  +|.+.|+
T Consensus       322 s~L~tL~L~~N~it~~~~~aF~~~~~l~~l~--l~~Np~~C--nC~l~wl  367 (498)
T KOG4237|consen  322 SGLKTLSLYDNQITTVAPGAFQTLFSLSTLN--LLSNPFNC--NCRLAWL  367 (498)
T ss_pred             ccceeeeecCCeeEEEecccccccceeeeee--hccCcccC--ccchHHH
Confidence            999999999999998 778888999999999  99999999  8999885

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=7.8e-20  Score=143.53  Aligned_cols=162  Identities=29%  Similarity=0.450  Sum_probs=121.6

Q ss_pred             ccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEe
Q 014200           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (429)
Q Consensus        41 ~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~  120 (429)
                      ++++.+++.|.++.|+++.+|..++.+.+|+.|++++|+++.+|..++.+++|+.|++.-|++..+|..|+.++.|+.|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD  108 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence            44567788888888888888877888888888888888888888888888888888888777777788888888888888


Q ss_pred             cCCCCCC--cCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCc
Q 014200          121 CSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG  198 (429)
Q Consensus       121 l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  198 (429)
                      +.+|.+.  .+|..++.++.|+.|++++|.+..+|..++++++|+.|.+.+|++-.++.. ++.++.|++|.+.+|+++.
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~v  187 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLTV  187 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceeee
Confidence            8877776  567777777777777777777777777777777777777777776666554 6666666666666666666


Q ss_pred             CCccc
Q 014200          199 MPETI  203 (429)
Q Consensus       199 ~~~~~  203 (429)
                      +|..+
T Consensus       188 lppel  192 (264)
T KOG0617|consen  188 LPPEL  192 (264)
T ss_pred             cChhh
Confidence            65444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=4.7e-18  Score=157.71  Aligned_cols=109  Identities=25%  Similarity=0.308  Sum_probs=70.0

Q ss_pred             cCEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhh
Q 014200          277 LSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (429)
Q Consensus       277 L~~l~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (429)
                      |++|++++|.+++     +...+..+++|+.|++++|.+++..        .   ...                   ...
T Consensus       195 L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~--------~---~~l-------------------~~~  244 (319)
T cd00116         195 LEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG--------A---AAL-------------------ASA  244 (319)
T ss_pred             CCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH--------H---HHH-------------------HHH
Confidence            5555555554443     2344667788888888888774311        0   000                   000


Q ss_pred             hhccccccccccccCCccc-----cCChhhhccCCCcEEeCCCCcccc-----CChhhccc-ccceeeccccCCCcc
Q 014200          352 ATRLSVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE-----LPPELSSC-ASLQVKFSDLVTNKE  417 (429)
Q Consensus       352 ~~~~~~~L~~l~l~~~~i~-----~~~~~~~~~~~L~~L~ls~n~i~~-----~~~~l~~l-~~L~~L~~~l~~n~i  417 (429)
                      .....+.|++|++++|.++     .+...+..+++|+++++++|.+++     +..++... +.|+++|  +.+|+|
T Consensus       245 ~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  319 (319)
T cd00116         245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLW--VKDDSF  319 (319)
T ss_pred             HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcc--cCCCCC
Confidence            0112357888999998886     345566677899999999999984     44444444 6899999  999875

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=5.3e-19  Score=138.86  Aligned_cols=159  Identities=31%  Similarity=0.462  Sum_probs=94.9

Q ss_pred             cCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEc
Q 014200           65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKA  144 (429)
Q Consensus        65 ~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l  144 (429)
                      -.+.+++.|.+++|.++.+|..++.+.+|+.|++.+|++..+|..+..+++|+.|+++-|++..+|..++.++.|+.|++
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence            34556667777777777777767777777777777777777777666667777776666666666666666666666666


Q ss_pred             CCCccc--cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC
Q 014200          145 SNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI  222 (429)
Q Consensus       145 ~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~  222 (429)
                      ..|.+.  .+|..|..+..|+.|++++|++..+++. ++.+++|+.|.+.+|.+-.+|..++.+.+|++|++++|+++.+
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence            655554  3455555555555555555555544443 4555555555555555545555555555555555555554444


Q ss_pred             Cc
Q 014200          223 PS  224 (429)
Q Consensus       223 ~~  224 (429)
                      |.
T Consensus       189 pp  190 (264)
T KOG0617|consen  189 PP  190 (264)
T ss_pred             Ch
Confidence            43

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.62  E-value=3.8e-16  Score=144.86  Aligned_cols=243  Identities=24%  Similarity=0.231  Sum_probs=153.4

Q ss_pred             cCCccEEEcCCCCCC-----ccchhccCCCCCCEEECCCCCCCC-------cchhhhCCCCCcEeecCCCcCcc-CCccc
Q 014200           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-------LPAAIGELHMLKSLDVSFNSIMK-IPDEI  110 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~i~~-------~~~~l~~l~~L~~L~l~~~~i~~-l~~~~  110 (429)
                      ..+|+.++++++.++     .++..+...+++++++++++.+..       ++..+..+++|++|++++|.+.. .+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            344777777777663     344455666677777777766542       23355667777777777776652 22333


Q ss_pred             cCC---CCcCEEecCCCCCC-----cCCccccCC-CCCCEEEcCCCccc-----cCCccccccCCCcEEEccCCcccccC
Q 014200          111 GSA---TALVKFDCSSNQLK-----ELPSSLGRC-LNLSDFKASNNCIT-----SLPEDLADCSKMSKLDVEGNKLTVLS  176 (429)
Q Consensus       111 ~~~---~~L~~L~l~~~~l~-----~~~~~~~~~-~~L~~L~l~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~~~  176 (429)
                      ..+   ++|++|++++|++.     .+...+..+ ++|+.+++++|.++     .++..+..+++|++|++++|.+....
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            222   34777777777665     122334455 67788888777766     23344556677888888877766322


Q ss_pred             hh----hhhcccccceeecCCccCCc-----CCccccCCccCCeEeccCCcCccC-Cccc-----cccCCCcEEEcCCCC
Q 014200          177 NN----LIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSI-PSSI-----SGCCSLAEFYMGNNA  241 (429)
Q Consensus       177 ~~----~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~-----~~~~~L~~L~l~~n~  241 (429)
                      ..    .+...+.|+.+++++|.++.     +...+..+++|+.|++++|.++.. ...+     ...+.|++|++++|.
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            11    13344578888888877642     234456678899999999887732 1111     124789999999998


Q ss_pred             CC-----ccChhhcCCCCCCEEECCCCcCccccch-----h-hc-cccCEEEccCCC
Q 014200          242 LS-----ALPAELGKLSKLGTLDLHSNQLKEYCVE-----A-CQ-LRLSVLDLSNNS  286 (429)
Q Consensus       242 i~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~-~~-~~L~~l~l~~n~  286 (429)
                      ++     .+...+..+++|+.+++++|.++.....     . .. ..++++++.+|.
T Consensus       262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            86     2345566778999999999988843221     1 11 348888887765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.40  E-value=7.4e-15  Score=136.01  Aligned_cols=191  Identities=29%  Similarity=0.413  Sum_probs=154.4

Q ss_pred             CCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCc
Q 014200          139 LSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (429)
Q Consensus       139 L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  218 (429)
                      -...+++.|++.++|..+..+..|+.+.+..|.+..++.. +..+..|..++++.|++..+|..+..++ |+.+-+++|+
T Consensus        77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence            3445667777777777766666777777766666665544 6677777777777777777777666666 7888899999


Q ss_pred             CccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCC
Q 014200          219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMT  298 (429)
Q Consensus       219 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~  298 (429)
                      ++.+|..++...+|..++.+.|.+..+|..++.+.+|+.|.+..|.+..++.+.....|.+||+++|++..+|..|.+|+
T Consensus       155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~  234 (722)
T KOG0532|consen  155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMR  234 (722)
T ss_pred             cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhh
Confidence            99888888888899999999999999999999999999999999999999988888889999999999999999999999


Q ss_pred             CCCEEEccCCCCCCccccccCCCcHHHHHHHHh
Q 014200          299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS  331 (429)
Q Consensus       299 ~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~  331 (429)
                      .|++|-+.+|++..-|.+++.......++|+.-
T Consensus       235 ~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~  267 (722)
T KOG0532|consen  235 HLQVLQLENNPLQSPPAQICEKGKVHIFKYLST  267 (722)
T ss_pred             hheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence            999999999999888877776666666655543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.39  E-value=1.6e-14  Score=133.90  Aligned_cols=207  Identities=29%  Similarity=0.373  Sum_probs=138.5

Q ss_pred             hHHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCC
Q 014200            2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLS   81 (429)
Q Consensus         2 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~   81 (429)
                      +.++.....--.|.|++..+..+|-..+..           ++......+++.|++..+|..+..|..|+.+.++.|.+.
T Consensus        43 ~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~-----------~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r  111 (722)
T KOG0532|consen   43 ERALEEAEYSGRLLLSGRRLKEFPRGAASY-----------DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR  111 (722)
T ss_pred             hHHHHHHhhhcccccccchhhcCCCccccc-----------cccchhhhhccccccccCchHHHHHHHHHHHHHHhccce
Confidence            345555555566677777766666555441           345556677777777777777777777777777777777


Q ss_pred             CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCC
Q 014200           82 ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSK  161 (429)
Q Consensus        82 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~  161 (429)
                      .+|+++..+..|++++++.|++..+|..+..+ -|+.+-+++|+++.+|..++....|..++.+.|++..+|..++.+.+
T Consensus       112 ~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~s  190 (722)
T KOG0532|consen  112 TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTS  190 (722)
T ss_pred             ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHH
Confidence            77777777777777777777777777665544 35666667777777776666666677777777777666666666666


Q ss_pred             CcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC
Q 014200          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI  222 (429)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~  222 (429)
                      |+.+.+..|.+..++.. +. .-.|..|+++.|++..+|..+..++.|+.|-+.+|++..-
T Consensus       191 lr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  191 LRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence            77666666666666654 22 3346666677776666666666677777777776666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.36  E-value=2.2e-13  Score=116.96  Aligned_cols=133  Identities=32%  Similarity=0.390  Sum_probs=116.2

Q ss_pred             hcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEEC
Q 014200          181 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL  260 (429)
Q Consensus       181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l  260 (429)
                      ..|..|+++++++|.++.+.+++.-.|+++.|+++.|.+..+.. ++.+++|+.|++++|.++++-.|-..+.++++|.+
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            34667899999999999888888889999999999999987755 88899999999999999988777788889999999


Q ss_pred             CCCcCccccchhhccccCEEEccCCCCCCCCc--cccCCCCCCEEEccCCCCCCcc
Q 014200          261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLR  314 (429)
Q Consensus       261 ~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~--~l~~~~~L~~L~l~~~~i~~~~  314 (429)
                      +.|.+.++....-..+|..||+++|+|..+..  .++++|+|+.+.+.+|++..++
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            99999887766666679999999999988644  5899999999999999997654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.34  E-value=3.8e-13  Score=115.48  Aligned_cols=132  Identities=22%  Similarity=0.218  Sum_probs=92.3

Q ss_pred             CCCCCCEEECCCCcCccccchhhc-cccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHH
Q 014200          251 KLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL  329 (429)
Q Consensus       251 ~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~  329 (429)
                      .++-|+++++++|.|+.+....-. +.++.|+++.|.+..+.. +..+++|+.|++++|.++++.+....          
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K----------  350 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLK----------  350 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhh----------
Confidence            344577777777777766544322 347777777777766543 66777777777777777654322110          


Q ss_pred             HhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcccc--CChhhccccccee
Q 014200          330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQV  407 (429)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~  407 (429)
                                                ..++|.|.+++|.|..+. ++..+-+|..||+++|+|..  --..++++|-|+.
T Consensus       351 --------------------------LGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  351 --------------------------LGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET  403 (490)
T ss_pred             --------------------------hcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence                                      136678888888776553 67778889999999999886  3356889999999


Q ss_pred             eccccCCCccccccc
Q 014200          408 KFSDLVTNKESCISG  422 (429)
Q Consensus       408 L~~~l~~n~i~~i~~  422 (429)
                      +.  +.+|++..+|+
T Consensus       404 l~--L~~NPl~~~vd  416 (490)
T KOG1259|consen  404 LR--LTGNPLAGSVD  416 (490)
T ss_pred             Hh--hcCCCccccch
Confidence            99  99999988775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.34  E-value=1.3e-13  Score=120.67  Aligned_cols=225  Identities=22%  Similarity=0.242  Sum_probs=119.9

Q ss_pred             cCCccEEEcCCCCCC-----ccchhccCCCCCCEEECCCCCCC----Ccc-------hhhhCCCCCcEeecCCCcCc--c
Q 014200           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLS----ELP-------AAIGELHMLKSLDVSFNSIM--K  105 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~i~----~~~-------~~l~~l~~L~~L~l~~~~i~--~  105 (429)
                      ...++.+++++|.+.     .+...+++.+.|+..++++-..+    .+|       +++.++|+|+++++|+|.+.  .
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            345667777776655     23444666667777777655322    222       34456677777777777665  1


Q ss_pred             C---CccccCCCCcCEEecCCCCCCcCC--------------ccccCCCCCCEEEcCCCccccC-----CccccccCCCc
Q 014200          106 I---PDEIGSATALVKFDCSSNQLKELP--------------SSLGRCLNLSDFKASNNCITSL-----PEDLADCSKMS  163 (429)
Q Consensus       106 l---~~~~~~~~~L~~L~l~~~~l~~~~--------------~~~~~~~~L~~L~l~~~~~~~~-----~~~l~~~~~L~  163 (429)
                      +   .+.+..+..|++|.+.+|.+....              .....-++|+++.+.+|++...     ...|...+.|+
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le  188 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE  188 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence            1   123456677777777777665221              1223344566666666655522     23344455566


Q ss_pred             EEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCc-----cCCccccccCCCcEEEcC
Q 014200          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMG  238 (429)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~  238 (429)
                      .+.++.|.+..-+..                   .+...+..+++|+.|++..|.++     .+..++..+++|++++++
T Consensus       189 evr~~qN~I~~eG~~-------------------al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  189 EVRLSQNGIRPEGVT-------------------ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             eEEEecccccCchhH-------------------HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            666655544422110                   01223444555555555555544     223445556666666666


Q ss_pred             CCCCC-----ccChhh-cCCCCCCEEECCCCcCccc-----cch-hhccccCEEEccCCCC
Q 014200          239 NNALS-----ALPAEL-GKLSKLGTLDLHSNQLKEY-----CVE-ACQLRLSVLDLSNNSL  287 (429)
Q Consensus       239 ~n~i~-----~~~~~~-~~~~~L~~L~l~~n~l~~~-----~~~-~~~~~L~~l~l~~n~l  287 (429)
                      +|.+.     .+..++ ...|+|+.+.+.+|.++.-     ... .-.+.|+.|++++|.+
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            66555     122222 3467777777777776621     111 1123377777777777

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.34  E-value=4.5e-12  Score=121.10  Aligned_cols=194  Identities=30%  Similarity=0.451  Sum_probs=93.2

Q ss_pred             eecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCC-CCCEEEcCCCccccCCccccccCCCcEEEccCCcccc
Q 014200           96 LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTV  174 (429)
Q Consensus        96 L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  174 (429)
                      ++...+.+......+...+.++.+++.++.+..++....... +|+.|++++|.+..++..+..+++|+.|++++|++..
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~  177 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD  177 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh
Confidence            444444442222223333455555555555555554444442 5555555555555554444555555555555555554


Q ss_pred             cChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCC
Q 014200          175 LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSK  254 (429)
Q Consensus       175 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~  254 (429)
                      ++.. ....+.++.+++++|.+..+|                       ........|+++.+++|.+...+..+..+.+
T Consensus       178 l~~~-~~~~~~L~~L~ls~N~i~~l~-----------------------~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~  233 (394)
T COG4886         178 LPKL-LSNLSNLNNLDLSGNKISDLP-----------------------PEIELLSALEELDLSNNSIIELLSSLSNLKN  233 (394)
T ss_pred             hhhh-hhhhhhhhheeccCCccccCc-----------------------hhhhhhhhhhhhhhcCCcceecchhhhhccc
Confidence            4432 224444444555555444444                       4333334445555554444444444444455


Q ss_pred             CCEEECCCCcCccccch-hhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCcc
Q 014200          255 LGTLDLHSNQLKEYCVE-ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR  314 (429)
Q Consensus       255 L~~L~l~~n~l~~~~~~-~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~  314 (429)
                      +..+.+.+|++..++.. ....+++.+++++|.++.++. +....+++.++++++.+..++
T Consensus       234 l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         234 LSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccc
Confidence            55555555544432211 122225555555555555544 555556666666666555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.33  E-value=2.8e-12  Score=122.44  Aligned_cols=195  Identities=33%  Similarity=0.479  Sum_probs=142.6

Q ss_pred             EEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCC-CcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccc
Q 014200           72 VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSAT-ALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT  150 (429)
Q Consensus        72 ~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~  150 (429)
                      .++...+.+..-...+..++.++.|++.++.+..++....... +|+.++++.|++..++..+..+++|+.|++++|++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            5677666664333445566777888888877777777666664 788888888887777667777788888888888887


Q ss_pred             cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccC
Q 014200          151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC  230 (429)
Q Consensus       151 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  230 (429)
                      .++......+.|+.+++++|.+..++.. ......|+++.+++|.....+..+..+.++..+.+.++.+..++..+..++
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~  255 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS  255 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence            7776665777888888888888777653 234455778888887665556667777777777777777777666777777


Q ss_pred             CCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccc
Q 014200          231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY  268 (429)
Q Consensus       231 ~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~  268 (429)
                      .++.|++++|.++.++. ++...+++.++++++.+...
T Consensus       256 ~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         256 NLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ccceecccccccccccc-ccccCccCEEeccCcccccc
Confidence            78888888888887766 77778888888888776643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=5.1e-13  Score=120.30  Aligned_cols=203  Identities=21%  Similarity=0.216  Sum_probs=140.0

Q ss_pred             ccCCCCCCEEECCCCCCCCcc--hhhhCCCCCcEeecCCCcCc---cCCccccCCCCcCEEecCCCCCCcCCc--cccCC
Q 014200           64 LRNLPLLTVLNVSHNKLSELP--AAIGELHMLKSLDVSFNSIM---KIPDEIGSATALVKFDCSSNQLKELPS--SLGRC  136 (429)
Q Consensus        64 ~~~~~~L~~L~l~~~~i~~~~--~~l~~l~~L~~L~l~~~~i~---~l~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~  136 (429)
                      =+++++|+.+.++++.+...+  +....|++++.|+++.|-+.   .+......+|+|+.|+++.|++....+  .-..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            356788899999888877665  36788999999999988655   334445678999999999988874432  22355


Q ss_pred             CCCCEEEcCCCccc--cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCC--ccccCCccCCeE
Q 014200          137 LNLSDFKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRL  212 (429)
Q Consensus       137 ~~L~~L~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L  212 (429)
                      +.|+.|.++.|.++  .+...+..+|+++.|+++.|....+.......+..|++|++++|.+-..+  .....++.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            67888888888887  33344566788888888888522222222345567888888888876555  345677888888


Q ss_pred             eccCCcCccC--Ccc-----ccccCCCcEEEcCCCCCCccC--hhhcCCCCCCEEECCCCcCc
Q 014200          213 DLHQNRILSI--PSS-----ISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLK  266 (429)
Q Consensus       213 ~l~~~~~~~~--~~~-----~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~n~l~  266 (429)
                      +++.+.+..+  |+.     ....++|++|++..|.+.+++  ..+..+++|+.+.+..|.++
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            8888877743  332     355677778887777776543  23555667777776666655

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=2e-13  Score=119.59  Aligned_cols=238  Identities=25%  Similarity=0.331  Sum_probs=158.5

Q ss_pred             hccCCCCCCEEECCCCCCC-----CcchhhhCCCCCcEeecCCCcCc----cCCcc-------ccCCCCcCEEecCCCCC
Q 014200           63 DLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM----KIPDE-------IGSATALVKFDCSSNQL  126 (429)
Q Consensus        63 ~~~~~~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~i~----~l~~~-------~~~~~~L~~L~l~~~~l  126 (429)
                      .......++.+++++|.++     .+...+++.++|+..++++--..    .+|+.       +-++++|++++|+.|.+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            3566788999999999887     23456777888888888763111    34433       34566777777777765


Q ss_pred             C-----cCCccccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcC-
Q 014200          127 K-----ELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-  199 (429)
Q Consensus       127 ~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-  199 (429)
                      .     .+..-+.+++.|++|++.+|.+...... ++  ..|..+..  +       .....-+.|+++...+|++..- 
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~~--~-------kk~~~~~~Lrv~i~~rNrlen~g  173 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELAV--N-------KKAASKPKLRVFICGRNRLENGG  173 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHHH--H-------hccCCCcceEEEEeecccccccc
Confidence            5     1122344566666666666655522110 00  01111110  0       0022345678888888877543 


Q ss_pred             ----CccccCCccCCeEeccCCcCc-----cCCccccccCCCcEEEcCCCCCC-----ccChhhcCCCCCCEEECCCCcC
Q 014200          200 ----PETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQL  265 (429)
Q Consensus       200 ----~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~~n~i~-----~~~~~~~~~~~L~~L~l~~n~l  265 (429)
                          ...++..+.|+.+.+..|.+.     .+..++..|++|+.|++.+|.++     .+..++..+++|+.+++++|.+
T Consensus       174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence                345677788999999999876     22356889999999999999888     3456788999999999999988


Q ss_pred             ccccch-------hhccccCEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCC
Q 014200          266 KEYCVE-------ACQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLR  311 (429)
Q Consensus       266 ~~~~~~-------~~~~~L~~l~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~i~  311 (429)
                      ..-...       -..++|+.+.+.+|.++.     +..++...+.|+.|++++|.+.
T Consensus       254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            732211       113469999999999986     3345666889999999999983

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=1e-12  Score=118.37  Aligned_cols=102  Identities=20%  Similarity=0.186  Sum_probs=42.6

Q ss_pred             ccCCeEeccCCcCccCC--ccccccCCCcEEEcCCCCCCcc---ChhhcCCCCCCEEECCCCcCccccch---hhccccC
Q 014200          207 SRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEYCVE---ACQLRLS  278 (429)
Q Consensus       207 ~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~L~  278 (429)
                      .+|+.+.+.++.....+  .....|++++.|+++.|-+..+   ......+|+|+.|+++.|.+......   .....++
T Consensus       121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK  200 (505)
T KOG3207|consen  121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK  200 (505)
T ss_pred             HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence            34444444444443332  1333444455555554444422   22234445555555555444321111   0111245


Q ss_pred             EEEccCCCCCC--CCccccCCCCCCEEEccCC
Q 014200          279 VLDLSNNSLSG--LPPEIGKMTTLRKLLLTGN  308 (429)
Q Consensus       279 ~l~l~~n~l~~--l~~~l~~~~~L~~L~l~~~  308 (429)
                      .|.++.|.++.  +...+..+|+|+.|++.+|
T Consensus       201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            55555554443  3333444555555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.24  E-value=8.7e-12  Score=102.49  Aligned_cols=122  Identities=26%  Similarity=0.354  Sum_probs=37.0

Q ss_pred             cCCccEEEcCCCCCCccchhcc-CCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccc-cCCCCcCEEec
Q 014200           44 AVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDC  121 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~-~~~~~L~~L~l  121 (429)
                      +.+++.|++.++.|+.+. .+. .+.+|+.|++++|.++.++ .+..+++|++|++++|.++.+++.+ ..+++|++|++
T Consensus        18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             cccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            445677777777776664 333 4566777777777776663 4556677777777777776665443 34667777777


Q ss_pred             CCCCCCcCC--ccccCCCCCCEEEcCCCccccCCc----cccccCCCcEEEc
Q 014200          122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDV  167 (429)
Q Consensus       122 ~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l  167 (429)
                      ++|++..+.  ..+..+++|+.|++.+|++...+.    .+..+|+|+.||-
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            776665432  234455566666666665553321    1344455555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.19  E-value=2.9e-11  Score=99.45  Aligned_cols=124  Identities=25%  Similarity=0.267  Sum_probs=43.1

Q ss_pred             cCCCCCCEEECCCCcCccccchh-hccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHH
Q 014200          250 GKLSKLGTLDLHSNQLKEYCVEA-CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY  328 (429)
Q Consensus       250 ~~~~~L~~L~l~~n~l~~~~~~~-~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~  328 (429)
                      .++.++++|++.+|.|+.+.... ...+++.|++++|.++.++. +..++.|+.|++++|.|+++++..           
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l-----------   83 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGL-----------   83 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHH-----------
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccch-----------
Confidence            34456788888888887665443 23458888888888887753 667788888888888886653210           


Q ss_pred             HHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC--ChhhhccCCCcEEeCCCCccccCC----hhhccc
Q 014200          329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI--PSEIWEAGEITKLDLSRNSIQELP----PELSSC  402 (429)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~--~~~~~~~~~L~~L~ls~n~i~~~~----~~l~~l  402 (429)
                                              ...+++|++|++++|+|..+  ...+..+++|+.|++.+|.++.-+    ..+..+
T Consensus        84 ------------------------~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l  139 (175)
T PF14580_consen   84 ------------------------DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL  139 (175)
T ss_dssp             ------------------------HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred             ------------------------HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence                                    01125778888888888743  245567788888888888877533    346677


Q ss_pred             ccceeec
Q 014200          403 ASLQVKF  409 (429)
Q Consensus       403 ~~L~~L~  409 (429)
                      |+|+.||
T Consensus       140 P~Lk~LD  146 (175)
T PF14580_consen  140 PSLKVLD  146 (175)
T ss_dssp             TT-SEET
T ss_pred             ChhheeC
Confidence            8888877

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.02  E-value=4.2e-10  Score=115.30  Aligned_cols=220  Identities=24%  Similarity=0.285  Sum_probs=110.3

Q ss_pred             cCCccEEEcCCCC--CCccch-hccCCCCCCEEECCCCC-CCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEE
Q 014200           44 AVDLQKLILAHNN--IEKLKE-DLRNLPLLTVLNVSHNK-LSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKF  119 (429)
Q Consensus        44 ~~~L~~L~l~~~~--i~~l~~-~~~~~~~L~~L~l~~~~-i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L  119 (429)
                      ++++++|-+.++.  +..++. .|..+|.|+.||+++|. +..+|+.++.+-+|++|+++++.+..+|..++++..|++|
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYL  623 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhee
Confidence            4456676666664  444444 36667777777777654 5567777777777777777777777777777777777777


Q ss_pred             ecCCCCCC-cCCccccCCCCCCEEEcCCCccccC---CccccccCCCcEEEccCCcccccChhhhhcccccc----eeec
Q 014200          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSL---PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT----ELIA  191 (429)
Q Consensus       120 ~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~---~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l  191 (429)
                      ++..+.-. .++.....+.+|++|.+........   -..+..+.+|+.+....... .+.. .+...+.|.    .+.+
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e-~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLE-DLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHh-hhhhhHHHHHHhHhhhh
Confidence            77655433 3333334466777776655442211   11223334444444322211 0000 012222222    2222


Q ss_pred             CCccCCcCCccccCCccCCeEeccCCcCccCCc-cc-----c-ccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCc
Q 014200          192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SI-----S-GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ  264 (429)
Q Consensus       192 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-----~-~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~  264 (429)
                      .++.....+..+..+++|+.|.+.++.+.+... ..     . .++++..+...++..-..+.+....|+|+.|.+.++.
T Consensus       702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~  781 (889)
T KOG4658|consen  702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR  781 (889)
T ss_pred             cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence            222333334455566666666666666543211 10     0 1223333333333333333334445566666666554


Q ss_pred             C
Q 014200          265 L  265 (429)
Q Consensus       265 l  265 (429)
                      .
T Consensus       782 ~  782 (889)
T KOG4658|consen  782 L  782 (889)
T ss_pred             c
Confidence            3

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.98  E-value=7.8e-11  Score=112.78  Aligned_cols=241  Identities=27%  Similarity=0.352  Sum_probs=145.8

Q ss_pred             CCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCC
Q 014200           67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN  146 (429)
Q Consensus        67 ~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  146 (429)
                      +..++.+.++.|.+..+...+..+.+|+.+++.+|.+..+...+..+++|++|++++|.|..+ ..+..++.|+.|++.+
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG  149 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence            444455555555555433345556666666666666665544455566666666666666655 3444555566666666


Q ss_pred             CccccCCccccccCCCcEEEccCCcccccCh-hhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCcc
Q 014200          147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS  225 (429)
Q Consensus       147 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  225 (429)
                      |.+..+. .+..+..|+.+++++|.+..+.. . ...+..++.+.+.+|.+..+. .+.....+..+++..|.+..+.. 
T Consensus       150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~-  225 (414)
T KOG0531|consen  150 NLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG-  225 (414)
T ss_pred             Ccchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC-
Confidence            6666542 33346666777777766665544 2 345666666677666664432 23333444444666666664422 


Q ss_pred             ccccC--CCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCC----CCcc-ccCCC
Q 014200          226 ISGCC--SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG----LPPE-IGKMT  298 (429)
Q Consensus       226 ~~~~~--~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~----l~~~-l~~~~  298 (429)
                      +....  +|+.+++++|.+...+..+..+..+..+++.+|.+..+........+..+....+.+..    .... ....+
T Consensus       226 l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (414)
T KOG0531|consen  226 LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAAP  305 (414)
T ss_pred             cccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhccccccccc
Confidence            12222  37888888888877766677778888888888888776665555556666666666553    1111 45567


Q ss_pred             CCCEEEccCCCCCC
Q 014200          299 TLRKLLLTGNPLRT  312 (429)
Q Consensus       299 ~L~~L~l~~~~i~~  312 (429)
                      .++.+.+..+++..
T Consensus       306 ~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  306 TLVTLTLELNPIRK  319 (414)
T ss_pred             cccccccccCcccc
Confidence            78888888887754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=1.7e-09  Score=110.93  Aligned_cols=197  Identities=24%  Similarity=0.300  Sum_probs=132.0

Q ss_pred             CCccEEEcCCCCCCccchhccCCCCCCEEECCCCC--CCCcch-hhhCCCCCcEeecCCC-cCccCCccccCCCCcCEEe
Q 014200           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNK--LSELPA-AIGELHMLKSLDVSFN-SIMKIPDEIGSATALVKFD  120 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~--i~~~~~-~l~~l~~L~~L~l~~~-~i~~l~~~~~~~~~L~~L~  120 (429)
                      ...+++.+-++.+..++.. ..+++|++|-+.++.  +..++. .|..+|.|++||+++| .+..+|..++.+-+||+|+
T Consensus       523 ~~~rr~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD  601 (889)
T ss_pred             hheeEEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence            4578888888877777654 345689999988885  666655 5888999999999988 7779999999999999999


Q ss_pred             cCCCCCCcCCccccCCCCCCEEEcCCCccc-cCCccccccCCCcEEEccCCccc--ccChhhhhcccccceeecCCccCC
Q 014200          121 CSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASWTMLTELIASKNLLN  197 (429)
Q Consensus       121 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~  197 (429)
                      ++++.+..+|..+..+.+|.+|++..+... .++.....+++|++|.+......  .....-+..+.+|+.+....... 
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-  680 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-  680 (889)
T ss_pred             ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence            999999999999999999999999877433 44556666899999988665411  11111133344444444422222 


Q ss_pred             cCCccccCCccCC----eEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200          198 GMPETIGSLSRLI----RLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (429)
Q Consensus       198 ~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  243 (429)
                      .+-..+....+|.    .+.+.++.....+..+..+.+|+.|.+.++.+.
T Consensus       681 ~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  681 LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence            1111112222222    333333333444556667777777777777665

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.91  E-value=1.8e-10  Score=110.35  Aligned_cols=214  Identities=27%  Similarity=0.327  Sum_probs=105.4

Q ss_pred             cceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcC
Q 014200          186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL  265 (429)
Q Consensus       186 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l  265 (429)
                      ++.+.++.+.+...-..+..+.+++.+++.+|.+..+...+..+++|+++++++|.|+++. .+..++.|+.|++.+|.+
T Consensus        74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i  152 (414)
T KOG0531|consen   74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI  152 (414)
T ss_pred             HHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcc
Confidence            3333344444433222233444455555555554444333444555555555555555442 233333455555555555


Q ss_pred             ccccchhhccccCEEEccCCCCCCCCcc-ccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCC
Q 014200          266 KEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT  344 (429)
Q Consensus       266 ~~~~~~~~~~~L~~l~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (429)
                      ..+........++.+++++|.++.+... ...+.+++.+.+.+|.+..+..........    ..  .+....+......
T Consensus       153 ~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~----~~--~l~~n~i~~~~~l  226 (414)
T KOG0531|consen  153 SDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLV----LL--SLLDNKISKLEGL  226 (414)
T ss_pred             hhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHH----Hh--hcccccceeccCc
Confidence            5444444344455555555555554332 344555555555555554332111000000    00  0000000000000


Q ss_pred             hhhHHhhhhcccc--ccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccc
Q 014200          345 KEDLITMATRLSV--TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKES  418 (429)
Q Consensus       345 ~~~~~~~~~~~~~--~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~  418 (429)
                               ....  .|+.++++++.+..++..+..+..+..+++++|++..+.. +...+.+..++  ..+|++.
T Consensus       227 ---------~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~--~~~~~~~  290 (414)
T KOG0531|consen  227 ---------NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELW--LNDNKLA  290 (414)
T ss_pred             ---------ccchhHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhc--cCcchhc
Confidence                     0001  3788999999998887778888999999999998876422 34456666777  7777765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=4.2e-09  Score=71.17  Aligned_cols=59  Identities=25%  Similarity=0.331  Sum_probs=52.8

Q ss_pred             cccccccccCCccccCCh-hhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcc
Q 014200          357 VTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKE  417 (429)
Q Consensus       357 ~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i  417 (429)
                      ++|+.|++++|+++.+|. .+..+++|++|++++|.++. -|.++.++++|++|+  +++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~--l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLD--LSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEE--ETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEe--CcCCcC
Confidence            478999999999999986 45589999999999999999 556889999999999  999986

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.74  E-value=2.6e-10  Score=109.20  Aligned_cols=180  Identities=26%  Similarity=0.247  Sum_probs=124.0

Q ss_pred             CccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhh----------cCCCCCCEEECCCCcCcccc
Q 014200          200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL----------GKLSKLGTLDLHSNQLKEYC  269 (429)
Q Consensus       200 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~----------~~~~~L~~L~l~~n~l~~~~  269 (429)
                      |-.+..+.+|+.|.+.++++........--..|++|.-. +.++.+-..|          -.+..|.+.++++|.+..+.
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD  180 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMD  180 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHH
Confidence            444556677888888888776533222222334444222 1111111111          01235788888999888766


Q ss_pred             chhhccc-cCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhH
Q 014200          270 VEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDL  348 (429)
Q Consensus       270 ~~~~~~~-L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (429)
                      ....... ++.|+|+.|+++++. .+..|+.|+.|+++.|.+..++-....|                            
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~g----------------------------  231 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVG----------------------------  231 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhh----------------------------
Confidence            5544433 899999999999875 6888999999999999988776443333                            


Q ss_pred             HhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCC--hhhcccccceeeccccCCCccccc
Q 014200          349 ITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--PELSSCASLQVKFSDLVTNKESCI  420 (429)
Q Consensus       349 ~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~--~~l~~l~~L~~L~~~l~~n~i~~i  420 (429)
                              +.|..|.++||-++++- ++.++.+|+.||+++|-+.+..  +-++.+..|+.|+  |.||++-|-
T Consensus       232 --------c~L~~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~--LeGNPl~c~  294 (1096)
T KOG1859|consen  232 --------CKLQLLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW--LEGNPLCCA  294 (1096)
T ss_pred             --------hhheeeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh--hcCCccccC
Confidence                    24678899999998776 7788999999999999888722  3467788999999  999998773

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=1e-08  Score=69.31  Aligned_cols=57  Identities=35%  Similarity=0.587  Sum_probs=27.9

Q ss_pred             CccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCc
Q 014200           46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS  102 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~  102 (429)
                      +|++|++++|+++.++. .|.++++|++|++++|.++.+++ +|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34455555555554443 34445555555555555544432 44555555555555443

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.62  E-value=2.3e-08  Score=61.84  Aligned_cols=41  Identities=44%  Similarity=0.548  Sum_probs=30.9

Q ss_pred             CCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccc
Q 014200          380 GEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISG  422 (429)
Q Consensus       380 ~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~  422 (429)
                      ++|++|++++|+|+++|..+++|++|++|+  +++|+|+++|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~--l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLN--LSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEE--ETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEE--ecCCCCCCCcC
Confidence            467888888888888777788888888888  88888887654

...

>PLN03150 hypothetical protein; Provisional

Probab=98.58  E-value=1.1e-07  Score=95.51  Aligned_cols=106  Identities=26%  Similarity=0.428  Sum_probs=87.5

Q ss_pred             cCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200          277 LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL  355 (429)
Q Consensus       277 L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (429)
                      ++.|+|++|.+.+ +|..+..+++|+.|++++|.++        |..+..+..                           
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--------g~iP~~~~~---------------------------  464 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--------GNIPPSLGS---------------------------  464 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--------CcCChHHhC---------------------------
Confidence            7889999999987 7888999999999999999884        333332221                           


Q ss_pred             ccccccccccCCccc-cCChhhhccCCCcEEeCCCCcccc-CChhhccc-ccceeeccccCCCcccc
Q 014200          356 SVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSC-ASLQVKFSDLVTNKESC  419 (429)
Q Consensus       356 ~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l-~~L~~L~~~l~~n~i~~  419 (429)
                      .++|+.|++++|+++ .+|+.+..+++|+.|+|++|++++ +|..+... .++..++  +.+|+..|
T Consensus       465 l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~--~~~N~~lc  529 (623)
T PLN03150        465 ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN--FTDNAGLC  529 (623)
T ss_pred             CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE--ecCCcccc
Confidence            258899999999998 789999999999999999999998 99888763 4677888  99988665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=3.6e-08  Score=85.20  Aligned_cols=199  Identities=20%  Similarity=0.212  Sum_probs=132.5

Q ss_pred             CCCEEECCCCCCCCcch--hh-hCCCCCcEeecCCCcCc---cCCccccCCCCcCEEecCCCCCCcCCccc-cCCCCCCE
Q 014200           69 LLTVLNVSHNKLSELPA--AI-GELHMLKSLDVSFNSIM---KIPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSD  141 (429)
Q Consensus        69 ~L~~L~l~~~~i~~~~~--~l-~~l~~L~~L~l~~~~i~---~l~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~  141 (429)
                      -++.+.+.++.|.+...  .| ..+.+++.+++.+|.++   .+...+.++|.|+.|+++.|++..-.... ....+|++
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            44556666666664432  22 45778888888888777   44445678889999999888877443444 35668899


Q ss_pred             EEcCCCccc--cCCccccccCCCcEEEccCCccccc--Chhhhhcc-cccceeecCCccCC---cCCccccCCccCCeEe
Q 014200          142 FKASNNCIT--SLPEDLADCSKMSKLDVEGNKLTVL--SNNLIASW-TMLTELIASKNLLN---GMPETIGSLSRLIRLD  213 (429)
Q Consensus       142 L~l~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~-~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~  213 (429)
                      +.+.+..+.  .....+..+|.+++++++.|.+..+  .......+ +.++++.+.+|...   .+..-...+|++..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            999888665  4455677788899999988855422  22222333 35667776666442   1222234467788888


Q ss_pred             ccCCcCccCC--ccccccCCCcEEEcCCCCCCcc--ChhhcCCCCCCEEECCCCcCcc
Q 014200          214 LHQNRILSIP--SSISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKE  267 (429)
Q Consensus       214 l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~  267 (429)
                      +..|++....  ......+.+..|+++.+.+.+.  ...+..++.|..|.++++.+.+
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            8888776442  3445566777788888888755  3457788888888888887764

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.50  E-value=1.4e-09  Score=104.38  Aligned_cols=197  Identities=23%  Similarity=0.219  Sum_probs=124.3

Q ss_pred             hCCCCCcEeecCCC---cCccCCccccCCCCcCEEecCCCCCCcCCccccCC-CCCCEEEcCCCccc----------cCC
Q 014200           88 GELHMLKSLDVSFN---SIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC-LNLSDFKASNNCIT----------SLP  153 (429)
Q Consensus        88 ~~l~~L~~L~l~~~---~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~L~l~~~~~~----------~~~  153 (429)
                      .-+++++.|.+-.-   .-+. |-.+..+.+|+.|.+.++.+... ..+..+ .+|++|.+.+.--.          .+.
T Consensus        81 d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~  158 (1096)
T KOG1859|consen   81 DFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASCGGDIS  158 (1096)
T ss_pred             HHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccc
Confidence            34455555554332   1111 44566678888999988887753 222222 25666655432100          111


Q ss_pred             ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCc
Q 014200          154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA  233 (429)
Q Consensus       154 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  233 (429)
                      .+ .....|...++++|.+..+... +.-++.++.|++++|++.++. .+..+++|++|+++.|.+..+|..-....+|.
T Consensus       159 ns-~~Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~  235 (1096)
T KOG1859|consen  159 NS-PVWNKLATASFSYNRLVLMDES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQ  235 (1096)
T ss_pred             cc-hhhhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhhe
Confidence            11 1124677778888877765443 667788888888888887775 67788888888888888887775433333488


Q ss_pred             EEEcCCCCCCccChhhcCCCCCCEEECCCCcCccc---cchhhccccCEEEccCCCCCCC
Q 014200          234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY---CVEACQLRLSVLDLSNNSLSGL  290 (429)
Q Consensus       234 ~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~~~L~~l~l~~n~l~~l  290 (429)
                      .|.+++|.++.+- .+.++.+|..||+++|-+.+.   .+......|+.|+|.||.+---
T Consensus       236 ~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  236 LLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             eeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            8888888877652 456677888888888876643   3333334477788888776543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.48  E-value=1.1e-08  Score=78.05  Aligned_cols=112  Identities=26%  Similarity=0.417  Sum_probs=71.2

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhcc-CCCCCCEEECCCCCCCCcchhhh
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLR-NLPLLTVLNVSHNKLSELPAAIG   88 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~l~   88 (429)
                      -+..+||+.|.+..++..+..-.+          ..+|+..++++|.+..+|..|. .++.++.+++++|.+..+|..+.
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~----------~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~A   97 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSK----------GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELA   97 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhC----------CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHh
Confidence            345566777766655544433221          3456667777777777766543 34567777777777777777677


Q ss_pred             CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc
Q 014200           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS  131 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~  131 (429)
                      .++.|+.|+++.|.+...|..+..+.++-+|+..++....++.
T Consensus        98 am~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen   98 AMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             hhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            7777777777777776666666556666666666666665543

>PLN03150 hypothetical protein; Provisional

Probab=98.44  E-value=7.2e-07  Score=89.66  Aligned_cols=102  Identities=28%  Similarity=0.444  Sum_probs=65.3

Q ss_pred             CCEEECCCCCCC-CcchhhhCCCCCcEeecCCCcCc-cCCccccCCCCcCEEecCCCCCC-cCCccccCCCCCCEEEcCC
Q 014200           70 LTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASN  146 (429)
Q Consensus        70 L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~  146 (429)
                      ++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++. .+|..+..+++|++|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            566667666665 45666667777777777777665 55666666777777777777666 5566666677777777777


Q ss_pred             Cccc-cCCcccccc-CCCcEEEccCCc
Q 014200          147 NCIT-SLPEDLADC-SKMSKLDVEGNK  171 (429)
Q Consensus       147 ~~~~-~~~~~l~~~-~~L~~L~l~~~~  171 (429)
                      |.+. .+|..+... .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            7665 555554432 345566666553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=8.3e-09  Score=89.10  Aligned_cols=124  Identities=19%  Similarity=0.201  Sum_probs=67.2

Q ss_pred             ccEEEcCCCCCC--ccchhccCCCCCCEEECCCCCCC-CcchhhhCCCCCcEeecCCC-cCccCC--ccccCCCCcCEEe
Q 014200           47 LQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFN-SIMKIP--DEIGSATALVKFD  120 (429)
Q Consensus        47 L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~-~i~~l~--~~~~~~~~L~~L~  120 (429)
                      +++++++...++  .+..-+..|.+|+.|.+.|+.+. .+...+++..+|+.|+++.+ .+++..  -.+.+|+.|+.|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            666777666665  33334566777777777777666 33345667777777777765 444321  2255677777777


Q ss_pred             cCCCCCCc-C-CccccC-CCCCCEEEcCCCccc----cCCccccccCCCcEEEccCC
Q 014200          121 CSSNQLKE-L-PSSLGR-CLNLSDFKASNNCIT----SLPEDLADCSKMSKLDVEGN  170 (429)
Q Consensus       121 l~~~~l~~-~-~~~~~~-~~~L~~L~l~~~~~~----~~~~~l~~~~~L~~L~l~~~  170 (429)
                      +++|.+.. . -..+.+ -++|+.|+++|+.-.    .+..-...+++|.+||++++
T Consensus       267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            77665441 1 011111 135555666554211    12222344556666666554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=2.6e-08  Score=86.10  Aligned_cols=62  Identities=23%  Similarity=0.075  Sum_probs=44.9

Q ss_pred             HHhhhhccccccccccccCCc-cc-cCChhhhccCCCcEEeCCCCcccc--CChhhcccccceeec
Q 014200          348 LITMATRLSVTSKELSLEGMN-LS-AIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKF  409 (429)
Q Consensus       348 ~~~~~~~~~~~L~~l~l~~~~-i~-~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~  409 (429)
                      .++....-+++|.+||+++|. ++ ..-..++.++-|++|.+++|+--.  .--.+...|+|.+||
T Consensus       304 h~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  304 HLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLD  369 (419)
T ss_pred             HHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEE
Confidence            345555667899999999875 44 344566688999999999997322  223467789999999

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.36  E-value=1.5e-07  Score=80.39  Aligned_cols=156  Identities=22%  Similarity=0.209  Sum_probs=77.9

Q ss_pred             cCCCCcCEEecCCCCCC-cCC----ccccCCCCCCEEEcCCCccccCCc--------------cccccCCCcEEEccCCc
Q 014200          111 GSATALVKFDCSSNQLK-ELP----SSLGRCLNLSDFKASNNCITSLPE--------------DLADCSKMSKLDVEGNK  171 (429)
Q Consensus       111 ~~~~~L~~L~l~~~~l~-~~~----~~~~~~~~L~~L~l~~~~~~~~~~--------------~l~~~~~L~~L~l~~~~  171 (429)
                      -+||+|+.++++.|.+. ..|    +.+++.+.|.+|.+++|.+..+..              ....-|.|+.+....|.
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            34455555555554443 111    233444555555555555442211              12234566666666665


Q ss_pred             ccccChhh----hhcccccceeecCCccCCc--C----CccccCCccCCeEeccCCcCc-----cCCccccccCCCcEEE
Q 014200          172 LTVLSNNL----IASWTMLTELIASKNLLNG--M----PETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFY  236 (429)
Q Consensus       172 ~~~~~~~~----~~~~~~L~~L~l~~~~l~~--~----~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~  236 (429)
                      +...+...    +.....|+++.+..|.+..  +    -..+..+.+|+.|+++.|.++     .+..++..++.|++|.
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            55433221    2222456666666665531  1    112344566777777777665     2234455666677777


Q ss_pred             cCCCCCCc-----cChhh--cCCCCCCEEECCCCcCc
Q 014200          237 MGNNALSA-----LPAEL--GKLSKLGTLDLHSNQLK  266 (429)
Q Consensus       237 l~~n~i~~-----~~~~~--~~~~~L~~L~l~~n~l~  266 (429)
                      +..|.++.     +...+  ...|+|..|...+|.+.
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            77776651     11222  23566777777666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.35  E-value=5.1e-08  Score=74.54  Aligned_cols=110  Identities=22%  Similarity=0.242  Sum_probs=83.1

Q ss_pred             cCEEEccCCCCCCCCcc---ccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhh
Q 014200          277 LSVLDLSNNSLSGLPPE---IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT  353 (429)
Q Consensus       277 L~~l~l~~n~l~~l~~~---l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (429)
                      +..++|+.|++..+++.   +.+...|..+++++|.++++|..+-                                   
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft-----------------------------------   73 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT-----------------------------------   73 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh-----------------------------------
Confidence            55677777777765554   3444556667888888876654321                                   


Q ss_pred             ccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccccc
Q 014200          354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGC  423 (429)
Q Consensus       354 ~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~  423 (429)
                      ..++.++.+++++|.|+.+|+++..++.|+.|+++.|.+...|+.+..+.++-+||  .-+|.+-.||-.
T Consensus        74 ~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld--s~~na~~eid~d  141 (177)
T KOG4579|consen   74 IKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD--SPENARAEIDVD  141 (177)
T ss_pred             hccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc--CCCCccccCcHH
Confidence            11235678899999999999999899999999999999999888888888888888  888887777654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.28  E-value=3.9e-07  Score=79.00  Aligned_cols=198  Identities=20%  Similarity=0.120  Sum_probs=121.5

Q ss_pred             cCCeEeccCCcCccCCc---cccccCCCcEEEcCCCCCCcc---ChhhcCCCCCCEEECCCCcCccccchh-hc-cccCE
Q 014200          208 RLIRLDLHQNRILSIPS---SISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEYCVEA-CQ-LRLSV  279 (429)
Q Consensus       208 ~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~-~~L~~  279 (429)
                      .++-+.+.++.+.....   .-..++.++++++.+|.+++.   ...+..+|.|++|+++.|++....... .+ .+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            44455666666553321   224577888999999988844   445678999999999999887433222 23 34899


Q ss_pred             EEccCCCCCC--CCccccCCCCCCEEEccCCCCCCc--cccccCCCc--HHHHHHHHhcCCCCCcccccCChhhH--Hhh
Q 014200          280 LDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTL--RSSLVNGPT--PALLKYLRSRLPENEDSEASTTKEDL--ITM  351 (429)
Q Consensus       280 l~l~~n~l~~--l~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  351 (429)
                      +.+.|..+.-  ....+..+|.+++++++.|....+  ++.......  ...++.            .+.....+  ...
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~------------~~c~~~~w~~~~~  193 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ------------LPCLEQLWLNKNK  193 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc------------CCcHHHHHHHHHh
Confidence            9988876543  444567777888888887754322  111111100  000100            00000111  112


Q ss_pred             hhccccccccccccCCccccC--ChhhhccCCCcEEeCCCCcccc--CChhhcccccceeeccccCCCcccc
Q 014200          352 ATRLSVTSKELSLEGMNLSAI--PSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       352 ~~~~~~~L~~l~l~~~~i~~~--~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      .....+++..+-+..|.++..  .+....+|.+-.|+|+.|+|.+  -.+.+..++.|+-|.  ++++++.+
T Consensus       194 l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlR--v~~~Pl~d  263 (418)
T KOG2982|consen  194 LSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLR--VSENPLSD  263 (418)
T ss_pred             HHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheee--ccCCcccc
Confidence            234457788888888887743  3344467778888898888886  446678888888888  88888765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.27  E-value=1.9e-07  Score=79.83  Aligned_cols=164  Identities=18%  Similarity=0.219  Sum_probs=84.6

Q ss_pred             ccccccCCCcEEEcCCCCCC-ccChh----hcCCCCCCEEECCCCcCccccchh---------------hccccCEEEcc
Q 014200          224 SSISGCCSLAEFYMGNNALS-ALPAE----LGKLSKLGTLDLHSNQLKEYCVEA---------------CQLRLSVLDLS  283 (429)
Q Consensus       224 ~~~~~~~~L~~L~l~~n~i~-~~~~~----~~~~~~L~~L~l~~n~l~~~~~~~---------------~~~~L~~l~l~  283 (429)
                      .++.+||+++.++++.|.+. .+|+.    +++...|++|.+++|.+..+...-               ..+.|+.+...
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            34567777777888777766 34433    456667777777777765432211               11225555555


Q ss_pred             CCCCCCCCc-----cccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccc
Q 014200          284 NNSLSGLPP-----EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT  358 (429)
Q Consensus       284 ~n~l~~l~~-----~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (429)
                      .|.+...+.     .+..-.+|+.+.+..|.|.--      |  ...+.+.                      -...+.+
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpe------g--v~~L~~~----------------------gl~y~~~  215 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPE------G--VTMLAFL----------------------GLFYSHS  215 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcc------h--hHHHHHH----------------------HHHHhCc
Confidence            555544222     122224555555555554210      0  0011110                      0122346


Q ss_pred             cccccccCCccc-----cCChhhhccCCCcEEeCCCCcccc--CC---hhhc--ccccceeeccccCCCcccc
Q 014200          359 SKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE--LP---PELS--SCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       359 L~~l~l~~~~i~-----~~~~~~~~~~~L~~L~ls~n~i~~--~~---~~l~--~l~~L~~L~~~l~~n~i~~  419 (429)
                      |+.||+..|.++     .+...+..++.|++|.+-.|.++.  ..   ..+.  ..|.|..|.  ..+|.+.+
T Consensus       216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~--~~Yne~~~  286 (388)
T COG5238         216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLP--GDYNERRG  286 (388)
T ss_pred             ceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccc--cchhhhcC
Confidence            677777777666     233344456667777777776553  21   2222  245666666  66666544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.25  E-value=2.2e-06  Score=70.24  Aligned_cols=123  Identities=20%  Similarity=0.249  Sum_probs=81.6

Q ss_pred             ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccC-CCCcCEEecCCCC
Q 014200           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS-ATALVKFDCSSNQ  125 (429)
Q Consensus        47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~-~~~L~~L~l~~~~  125 (429)
                      =+.+++++.++..+..-=.-..+...+|+++|.+..+ ..|..++.|.+|.+.+|+|+.+.+.+.. +++|+.|.+.+|.
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            3556666555544332112234566788888877655 3566778888888888888877665543 5678888888888


Q ss_pred             CCcCC--ccccCCCCCCEEEcCCCccccCCc----cccccCCCcEEEccCC
Q 014200          126 LKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVEGN  170 (429)
Q Consensus       126 l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~  170 (429)
                      +..+.  ..+..|++|+.|.+-+|+++....    .+..+++|+.||+++-
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            77553  356677888888888887774322    3566778888887653

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.20  E-value=8.2e-06  Score=75.76  Aligned_cols=135  Identities=19%  Similarity=0.242  Sum_probs=82.5

Q ss_pred             cCCccCCeEeccCCcCccCCccccccCCCcEEEcCCC-CCCccChhhcCCCCCCEEECCCC-cCccccchhhccccCEEE
Q 014200          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN-ALSALPAELGKLSKLGTLDLHSN-QLKEYCVEACQLRLSVLD  281 (429)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~L~~l~  281 (429)
                      ..+.+++.|++++|.+..+|.   -.++|++|.+++| .++.+|..+  .++|+.|++++| .+..+     +.+|+.|+
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~  118 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLE  118 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEE
Confidence            345778888888887777762   3446888888775 555666544  247777777776 44433     33477777


Q ss_pred             ccCCCCCC---CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccc
Q 014200          282 LSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT  358 (429)
Q Consensus       282 l~~n~l~~---l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (429)
                      ++++....   +|.      +|+.|.+.++.-..      .                             ......+|++
T Consensus       119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~------~-----------------------------~~lp~~LPsS  157 (426)
T PRK15386        119 IKGSATDSIKNVPN------GLTSLSINSYNPEN------Q-----------------------------ARIDNLISPS  157 (426)
T ss_pred             eCCCCCcccccCcc------hHhheecccccccc------c-----------------------------cccccccCCc
Confidence            76654433   333      45555553321100      0                             0000124578


Q ss_pred             cccccccCCccccCChhhhccCCCcEEeCCCCc
Q 014200          359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS  391 (429)
Q Consensus       359 L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~  391 (429)
                      |+.|++++|....+|..+-  .+|++|+++.|.
T Consensus       158 Lk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~  188 (426)
T PRK15386        158 LKTLSLTGCSNIILPEKLP--ESLQSITLHIEQ  188 (426)
T ss_pred             ccEEEecCCCcccCccccc--ccCcEEEecccc
Confidence            9999999998877665443  689999998873

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.16  E-value=3.4e-06  Score=52.12  Aligned_cols=38  Identities=42%  Similarity=0.675  Sum_probs=18.4

Q ss_pred             CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc
Q 014200           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL   83 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~   83 (429)
                      +|++|++++|+++.++..++++++|+.|++++|.++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            34555555555555554455555555555555554443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.05  E-value=1.3e-05  Score=74.41  Aligned_cols=118  Identities=17%  Similarity=0.230  Sum_probs=81.6

Q ss_pred             hhcccccceeecCCccCCcCCccccCCccCCeEeccCCc-CccCCccccccCCCcEEEcCCC-CCCccChhhcCCCCCCE
Q 014200          180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR-ILSIPSSISGCCSLAEFYMGNN-ALSALPAELGKLSKLGT  257 (429)
Q Consensus       180 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~~~~~L~~  257 (429)
                      +..+..++.|++++|.++.+|.   -.++|+.|.+.+|. +..+|..+  .++|++|.+++| .+..+|.      +|+.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence            4557889999999998888883   34579999999864 45566544  468999999998 6666664      5888


Q ss_pred             EECCCCcCccccchhhccccCEEEccCCC-C--CCCCccccCCCCCCEEEccCCCCCC
Q 014200          258 LDLHSNQLKEYCVEACQLRLSVLDLSNNS-L--SGLPPEIGKMTTLRKLLLTGNPLRT  312 (429)
Q Consensus       258 L~l~~n~l~~~~~~~~~~~L~~l~l~~n~-l--~~l~~~l~~~~~L~~L~l~~~~i~~  312 (429)
                      |++..+....+.  ..+.+|++|.+.+++ .  ..++..+  .++|+.|++++|....
T Consensus       117 L~L~~n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~  170 (426)
T PRK15386        117 LEIKGSATDSIK--NVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII  170 (426)
T ss_pred             EEeCCCCCcccc--cCcchHhheecccccccccccccccc--CCcccEEEecCCCccc
Confidence            888776655432  345568888885432 1  1122211  2589999999987543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.05  E-value=9.4e-06  Score=66.65  Aligned_cols=104  Identities=22%  Similarity=0.272  Sum_probs=84.3

Q ss_pred             CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchh-hhCCCCCcEeecCCCcCccCCc--cccCCCCcCEEecC
Q 014200           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCS  122 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~-l~~l~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~  122 (429)
                      ....+++++|.+..++ .|..++.|.+|.+.+|.|+.+.+. -..+++|+.|.+.+|.+..+.+  .+..||+|++|.+-
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            4678999999988776 688899999999999999988554 4667899999999999986644  36789999999999


Q ss_pred             CCCCCcCC----ccccCCCCCCEEEcCCCccc
Q 014200          123 SNQLKELP----SSLGRCLNLSDFKASNNCIT  150 (429)
Q Consensus       123 ~~~l~~~~----~~~~~~~~L~~L~l~~~~~~  150 (429)
                      +|++..-.    .-+..+++|++|++.+-...
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            99887443    24668899999998765433

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.90  E-value=1.3e-05  Score=63.27  Aligned_cols=118  Identities=25%  Similarity=0.474  Sum_probs=55.5

Q ss_pred             cccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCc-cccCCCCc
Q 014200           40 KWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATAL  116 (429)
Q Consensus        40 ~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L  116 (429)
                      .|++|.+|+.+.+.. .+..++. .|.++++|+.+.+.++ +..++. +|.++++++.+.+.+ .+..++. .+..++++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344466778777764 4666655 4777777888887664 666654 677777788888765 3444433 35567788


Q ss_pred             CEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccccCC-ccccccCCCc
Q 014200          117 VKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMS  163 (429)
Q Consensus       117 ~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~  163 (429)
                      +.+.+..+ +..++. .+..+ +++.+.+.. .+..++ ..|.++++|+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            88887654 554543 34444 777777765 333332 3455555553

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.89  E-value=6.8e-07  Score=81.03  Aligned_cols=66  Identities=20%  Similarity=0.233  Sum_probs=31.7

Q ss_pred             HhhhhccccccccccccCCccc--c----CChhhhccCCCcEEeCCCCcc-cc-CChhhcccccceeeccccCCCc
Q 014200          349 ITMATRLSVTSKELSLEGMNLS--A----IPSEIWEAGEITKLDLSRNSI-QE-LPPELSSCASLQVKFSDLVTNK  416 (429)
Q Consensus       349 ~~~~~~~~~~L~~l~l~~~~i~--~----~~~~~~~~~~L~~L~ls~n~i-~~-~~~~l~~l~~L~~L~~~l~~n~  416 (429)
                      .......++.|+.+.+++|...  +    +...-.....|+.+.++++.. ++ ..+.+..|+.|+.++  +-+++
T Consensus       364 L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~--l~~~q  437 (483)
T KOG4341|consen  364 LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE--LIDCQ  437 (483)
T ss_pred             HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee--eechh
Confidence            3344444555666666655322  1    111122344555666666643 23 445555566666655  55443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.87  E-value=1.7e-05  Score=79.90  Aligned_cols=107  Identities=19%  Similarity=0.190  Sum_probs=54.0

Q ss_pred             CCCCCCEEECCCCCCC--CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCC--ccccCCCCCCE
Q 014200           66 NLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSD  141 (429)
Q Consensus        66 ~~~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~  141 (429)
                      .+|.|+.|.+.+-.+.  ++.....++|+|..||++++.++.+ .++..+++|+.|.+.+=.+....  ..++.+++|++
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            3566666666554433  2233445566666666666655544 34555555655555543333211  23455666666


Q ss_pred             EEcCCCccccCC-------ccccccCCCcEEEccCCccc
Q 014200          142 FKASNNCITSLP-------EDLADCSKMSKLDVEGNKLT  173 (429)
Q Consensus       142 L~l~~~~~~~~~-------~~l~~~~~L~~L~l~~~~~~  173 (429)
                      |++|.......+       +.-..+|.|+.||.+++.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            666554333211       11223566666666665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.85  E-value=6.7e-05  Score=59.20  Aligned_cols=103  Identities=17%  Similarity=0.337  Sum_probs=40.6

Q ss_pred             HHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCC
Q 014200            4 ILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE   82 (429)
Q Consensus         4 ~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~   82 (429)
                      +|.++++++.+.+.. .+..|+...|..            +.+++.+.+..+ +..++. .|.++++++.+.+.+ .+..
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~------------~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~   71 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSN------------CTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKS   71 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-------------TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-E
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccc------------cccccccccccc-ccccceeeeecccccccccccc-cccc
Confidence            445555555555553 344555555543            444555555442 444443 355555555555543 3333


Q ss_pred             cch-hhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCC
Q 014200           83 LPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSS  123 (429)
Q Consensus        83 ~~~-~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~  123 (429)
                      ++. .|..+++|+.+++..+ +..++. .+.++ +++.+.+..
T Consensus        72 i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   72 IGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             E-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            332 4555555555555443 333322 23444 555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.85  E-value=1.4e-05  Score=80.49  Aligned_cols=102  Identities=26%  Similarity=0.272  Sum_probs=47.9

Q ss_pred             CCCCEEECCCCCCC--Ccchhh-hCCCCCcEeecCCCcCc--cCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEE
Q 014200           68 PLLTVLNVSHNKLS--ELPAAI-GELHMLKSLDVSFNSIM--KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDF  142 (429)
Q Consensus        68 ~~L~~L~l~~~~i~--~~~~~l-~~l~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L  142 (429)
                      .+|+.|+++|...-  ..|..+ ..+|+|+.|.+.+-.+.  .+.....++|+|..|++++++++.+ .+++++.+|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            35555555554311  222222 23555555555554332  1112234455555556655555554 445555555555


Q ss_pred             EcCCCccccCC--ccccccCCCcEEEccCC
Q 014200          143 KASNNCITSLP--EDLADCSKMSKLDVEGN  170 (429)
Q Consensus       143 ~l~~~~~~~~~--~~l~~~~~L~~L~l~~~  170 (429)
                      .+.+-.+....  ..+..+.+|+.||+|..
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            55444443211  23445555555655544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.77  E-value=2e-06  Score=78.09  Aligned_cols=284  Identities=16%  Similarity=0.116  Sum_probs=162.5

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCC-CCc--cchhccCCCCCCEEECCCCC-CCCc--
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNN-IEK--LKEDLRNLPLLTVLNVSHNK-LSEL--   83 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-i~~--l~~~~~~~~~L~~L~l~~~~-i~~~--   83 (429)
                      .++.|.++++.=  ++.........        .|+++++|.+.++. +++  ....-+.|++++.+++..|. ++..  
T Consensus       139 ~lk~LSlrG~r~--v~~sslrt~~~--------~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~L  208 (483)
T KOG4341|consen  139 FLKELSLRGCRA--VGDSSLRTFAS--------NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSL  208 (483)
T ss_pred             cccccccccccc--CCcchhhHHhh--------hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHH
Confidence            678888888752  22222222111        58999999998874 432  22223679999999999964 5532  


Q ss_pred             chhhhCCCCCcEeecCCC-cCc--cCCccccCCCCcCEEecCCCCCC---cCCccccCCCCCCEEEcCCC-ccccC--Cc
Q 014200           84 PAAIGELHMLKSLDVSFN-SIM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKASNN-CITSL--PE  154 (429)
Q Consensus        84 ~~~l~~l~~L~~L~l~~~-~i~--~l~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~~-~~~~~--~~  154 (429)
                      .....++++|+++++++| ++.  .+.....++..++.+...+|.=.   .+...-..+.-+..+++..+ .++..  ..
T Consensus       209 k~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~  288 (483)
T KOG4341|consen  209 KYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL  288 (483)
T ss_pred             HHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence            224468999999999998 555  34444667777777776654311   11112223344445554444 22211  11


Q ss_pred             cccccCCCcEEEccCCc-ccccChh-hhhcccccceeecCCccC-CcC--CccccCCccCCeEeccCCcCc---cCCccc
Q 014200          155 DLADCSKMSKLDVEGNK-LTVLSNN-LIASWTMLTELIASKNLL-NGM--PETIGSLSRLIRLDLHQNRIL---SIPSSI  226 (429)
Q Consensus       155 ~l~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L~~L~l~~~~l-~~~--~~~~~~~~~L~~L~l~~~~~~---~~~~~~  226 (429)
                      .-..+..|+.++.+++. +++.... .-.++.+|+.+.+++++. +..  ..--.+++.|+.+++.++...   .+-+.-
T Consensus       289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence            12345677888877653 2222211 123457788888877753 221  111245677888888877554   233445


Q ss_pred             cccCCCcEEEcCCCC-CCcc-----ChhhcCCCCCCEEECCCCcCcc---ccchhhccccCEEEccCCCC-CC--CCccc
Q 014200          227 SGCCSLAEFYMGNNA-LSAL-----PAELGKLSKLGTLDLHSNQLKE---YCVEACQLRLSVLDLSNNSL-SG--LPPEI  294 (429)
Q Consensus       227 ~~~~~L~~L~l~~n~-i~~~-----~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~~L~~l~l~~n~l-~~--l~~~l  294 (429)
                      .+|+.++.+.++.|. +++-     ...-..+..++.+.++++....   +.......+|+++++-+++- +.  +.+.-
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~  448 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFA  448 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHH
Confidence            678888888888773 4422     1222455678888888886542   22222333588887766632 22  44445


Q ss_pred             cCCCCCCEE
Q 014200          295 GKMTTLRKL  303 (429)
Q Consensus       295 ~~~~~L~~L  303 (429)
                      .++|+++..
T Consensus       449 ~~lp~i~v~  457 (483)
T KOG4341|consen  449 THLPNIKVH  457 (483)
T ss_pred             hhCccceeh
Confidence            566666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=1.4e-05  Score=68.89  Aligned_cols=83  Identities=22%  Similarity=0.238  Sum_probs=67.8

Q ss_pred             cCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCc--cccCCCCCCEEEcc
Q 014200          229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLT  306 (429)
Q Consensus       229 ~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~--~l~~~~~L~~L~l~  306 (429)
                      +.+.++|+.++|.++++ .....++.|+.|.++-|.|+.+.+..-+.+|++|+|+.|.|.++..  .+.++|+|+.|.+.
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            44567788888888765 2456788999999999999988888777789999999999988754  47899999999999


Q ss_pred             CCCCCC
Q 014200          307 GNPLRT  312 (429)
Q Consensus       307 ~~~i~~  312 (429)
                      .|+...
T Consensus        97 ENPCc~  102 (388)
T KOG2123|consen   97 ENPCCG  102 (388)
T ss_pred             cCCccc
Confidence            998754

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=3.5e-05  Score=66.55  Aligned_cols=81  Identities=23%  Similarity=0.207  Sum_probs=46.4

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch--h
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--A   86 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~--~   86 (429)
                      .+++.|++.++.+++|.-.  +            +++.|+.|.|+-|.|+.+. .+..|++|++|+|+.|.|..+.+  .
T Consensus        19 ~~vkKLNcwg~~L~DIsic--~------------kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y   83 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISIC--E------------KMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEY   83 (388)
T ss_pred             HHhhhhcccCCCccHHHHH--H------------hcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHH
Confidence            3555666666666655321  1            2455666666666666554 35566666666666666665533  4


Q ss_pred             hhCCCCCcEeecCCCcCc
Q 014200           87 IGELHMLKSLDVSFNSIM  104 (429)
Q Consensus        87 l~~l~~L~~L~l~~~~i~  104 (429)
                      +.++|+|+.|-+..|...
T Consensus        84 LknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HhcCchhhhHhhccCCcc
Confidence            566666666666655443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.86  E-value=0.0004  Score=59.75  Aligned_cols=102  Identities=22%  Similarity=0.230  Sum_probs=63.8

Q ss_pred             CCccEEEcCCCCCCccchhccCCCCCCEEECCCCCC--C-CcchhhhCCCCCcEeecCCCcCccCC--ccccCCCCcCEE
Q 014200           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL--S-ELPAAIGELHMLKSLDVSFNSIMKIP--DEIGSATALVKF  119 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i--~-~~~~~l~~l~~L~~L~l~~~~i~~l~--~~~~~~~~L~~L  119 (429)
                      ..++.+.+.+..++.+. .|..+++|++|.++.|..  . .++.....+|+|++++++.|.+..+.  ..+..+.+|..|
T Consensus        43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L  121 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL  121 (260)
T ss_pred             cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence            44666666665555443 356677888888888843  2 33344456688899998888776321  225567778888


Q ss_pred             ecCCCCCCcCC----ccccCCCCCCEEEcCCC
Q 014200          120 DCSSNQLKELP----SSLGRCLNLSDFKASNN  147 (429)
Q Consensus       120 ~l~~~~l~~~~----~~~~~~~~L~~L~l~~~  147 (429)
                      ++.+|.....-    ..+.-+++|+.++-...
T Consensus       122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            88877665332    13445567777654433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.68  E-value=0.00064  Score=34.87  Aligned_cols=17  Identities=35%  Similarity=0.651  Sum_probs=7.9

Q ss_pred             CcEEeCCCCccccCChh
Q 014200          382 ITKLDLSRNSIQELPPE  398 (429)
Q Consensus       382 L~~L~ls~n~i~~~~~~  398 (429)
                      |++|||++|+|+.+|+.
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44444444444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.67  E-value=0.00055  Score=67.30  Aligned_cols=130  Identities=21%  Similarity=0.168  Sum_probs=78.7

Q ss_pred             HHHHhhhcCeeeccCC-CCccCChhhhhhhccccCCCcccccCCccEEEcCCC-C-CCccc----hhccCCCCCCEEECC
Q 014200            4 ILKAARTSGSLNLSNR-SLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN-N-IEKLK----EDLRNLPLLTVLNVS   76 (429)
Q Consensus         4 ~~~~~~~l~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-i~~l~----~~~~~~~~L~~L~l~   76 (429)
                      ....++.++.+.+.++ .++...  ....         .+.+++|+.|+++++ . +...+    .....+++|+.++++
T Consensus       183 l~~~~~~L~~l~l~~~~~~~~~~--~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  251 (482)
T KOG1947|consen  183 LLSSCPLLKRLSLSGCSKITDDS--LDAL---------ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS  251 (482)
T ss_pred             HHhhCchhhHhhhcccccCChhh--HHHH---------HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh
Confidence            3445678888888876 344322  1111         123788999998873 2 22111    234567889999998


Q ss_pred             CCC-CCCcc-hh-hhCCCCCcEeecCCCc-Cc--cCCccccCCCCcCEEecCCCCCC---cCCccccCCCCCCEEEc
Q 014200           77 HNK-LSELP-AA-IGELHMLKSLDVSFNS-IM--KIPDEIGSATALVKFDCSSNQLK---ELPSSLGRCLNLSDFKA  144 (429)
Q Consensus        77 ~~~-i~~~~-~~-l~~l~~L~~L~l~~~~-i~--~l~~~~~~~~~L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l  144 (429)
                      .+. +++.. .. ...+++|++|.+.+|. ++  .+......++.|++|+++++...   .+......+++++.+.+
T Consensus       252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence            887 55432 22 3448899999977775 44  33344567888999999877543   12223445666666544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.58  E-value=0.0012  Score=56.91  Aligned_cols=86  Identities=26%  Similarity=0.279  Sum_probs=48.6

Q ss_pred             ccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCC--cCc-cCCccccCCCCcCEEecCCCCCCcCC--ccccCCCC
Q 014200           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN--SIM-KIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLN  138 (429)
Q Consensus        64 ~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~--~i~-~l~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~  138 (429)
                      ...+..|+.+.+.+..++++ ..+-.+|+|++|.++.|  ++. .++.-...+++|+++++++|++..+.  ..+..+.+
T Consensus        39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34455666666666665544 23446777888888877  333 33333455677777777777766421  12233344


Q ss_pred             CCEEEcCCCccc
Q 014200          139 LSDFKASNNCIT  150 (429)
Q Consensus       139 L~~L~l~~~~~~  150 (429)
                      |..|++..|..+
T Consensus       118 L~~Ldl~n~~~~  129 (260)
T KOG2739|consen  118 LKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcccCCcc
Confidence            555555555443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.51  E-value=0.00078  Score=66.23  Aligned_cols=105  Identities=27%  Similarity=0.340  Sum_probs=45.5

Q ss_pred             CCCCCEEECCCCC-CCC--cchhhhCCCCCcEeecCCC--cCccCC----ccccCCCCcCEEecCCCC-CCcC--Ccccc
Q 014200           67 LPLLTVLNVSHNK-LSE--LPAAIGELHMLKSLDVSFN--SIMKIP----DEIGSATALVKFDCSSNQ-LKEL--PSSLG  134 (429)
Q Consensus        67 ~~~L~~L~l~~~~-i~~--~~~~l~~l~~L~~L~l~~~--~i~~l~----~~~~~~~~L~~L~l~~~~-l~~~--~~~~~  134 (429)
                      ++.|+.+.+.++. +..  +-.....+++|+.|+++++  .+...+    .....+++|+.++++.+. ++..  .....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4555555555543 222  2234445555555555542  111111    122334555555555544 3311  11112


Q ss_pred             CCCCCCEEEcCCCc-cc--cCCccccccCCCcEEEccCCc
Q 014200          135 RCLNLSDFKASNNC-IT--SLPEDLADCSKMSKLDVEGNK  171 (429)
Q Consensus       135 ~~~~L~~L~l~~~~-~~--~~~~~l~~~~~L~~L~l~~~~  171 (429)
                      .|++|++|.+.++. ++  .+......++.|++|+++++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            25556665544443 23  122223445556666665543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.75  E-value=0.0057  Score=29.01  Aligned_cols=14  Identities=21%  Similarity=0.252  Sum_probs=4.9

Q ss_pred             ceeeccccCCCccccc
Q 014200          405 LQVKFSDLVTNKESCI  420 (429)
Q Consensus       405 L~~L~~~l~~n~i~~i  420 (429)
                      |++|+  +++|+++.+
T Consensus         3 L~~L~--l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLD--LSNNRLTSL   16 (17)
T ss_dssp             -SEEE--ETSS--SSE
T ss_pred             cCEEE--CCCCCCCCC
Confidence            44444  444444443

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.71  E-value=0.00025  Score=68.52  Aligned_cols=59  Identities=34%  Similarity=0.354  Sum_probs=40.0

Q ss_pred             cccccccCCccc-----cCChhhhcc-CCCcEEeCCCCcccc-----CChhhcccccceeeccccCCCcccc
Q 014200          359 SKELSLEGMNLS-----AIPSEIWEA-GEITKLDLSRNSIQE-----LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       359 L~~l~l~~~~i~-----~~~~~~~~~-~~L~~L~ls~n~i~~-----~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      +..+++.+|++.     .+..++..+ ..++.++++.|.|++     +.+.+..++.++++.  +.+|++++
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~--l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELS--LSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhh--cccCcccc
Confidence            455777777766     233344444 566788888887764     556667777888888  88887765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.0057  Score=31.29  Aligned_cols=19  Identities=21%  Similarity=0.251  Sum_probs=16.9

Q ss_pred             cceeeccccCCCccccccccc
Q 014200          404 SLQVKFSDLVTNKESCISGCY  424 (429)
Q Consensus       404 ~L~~L~~~l~~n~i~~i~~~~  424 (429)
                      +|++||  +++|+|+.||+.+
T Consensus         1 ~L~~Ld--ls~n~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLD--LSGNNLTSIPSSF   19 (22)
T ss_dssp             TESEEE--ETSSEESEEGTTT
T ss_pred             CccEEE--CCCCcCEeCChhh
Confidence            589999  9999999999873

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.45  E-value=0.0066  Score=28.80  Aligned_cols=17  Identities=41%  Similarity=0.694  Sum_probs=11.4

Q ss_pred             CCCcEEeCCCCccccCC
Q 014200          380 GEITKLDLSRNSIQELP  396 (429)
Q Consensus       380 ~~L~~L~ls~n~i~~~~  396 (429)
                      ++|+.|+|++|+++.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            57999999999998765

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.23  E-value=0.00024  Score=68.61  Aligned_cols=179  Identities=25%  Similarity=0.264  Sum_probs=93.3

Q ss_pred             cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCc-----cchhccCC-CCCCEEECCCCCCCC--
Q 014200           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-----LKEDLRNL-PLLTVLNVSHNKLSE--   82 (429)
Q Consensus        11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-----l~~~~~~~-~~L~~L~l~~~~i~~--   82 (429)
                      +..+++.+|.+.+-+......        .+..+++|+.|++++|.+..     +...+... ..+++|++..|.++.  
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~--------~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g  160 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQ--------ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEG  160 (478)
T ss_pred             HHHhhhhhCccccchHHHHHH--------HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccc
Confidence            555666666665444333221        11135566666776666551     11123332 445566666666552  


Q ss_pred             ---cchhhhCCCCCcEeecCCCcCc-----cCCcccc----CCCCcCEEecCCCCCCc-----CCccccCCCC-CCEEEc
Q 014200           83 ---LPAAIGELHMLKSLDVSFNSIM-----KIPDEIG----SATALVKFDCSSNQLKE-----LPSSLGRCLN-LSDFKA  144 (429)
Q Consensus        83 ---~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~----~~~~L~~L~l~~~~l~~-----~~~~~~~~~~-L~~L~l  144 (429)
                         +.+.+....+++.++++.|.+.     .++..+.    ...+++++.+.++.++.     +...+...+. +..+++
T Consensus       161 ~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l  240 (478)
T KOG4308|consen  161 AAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDL  240 (478)
T ss_pred             hHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHH
Confidence               2344555666777777666553     1122222    34566667676665551     1122333343 555666


Q ss_pred             CCCccccC-----Ccccccc-CCCcEEEccCCcccccChh----hhhcccccceeecCCccCC
Q 014200          145 SNNCITSL-----PEDLADC-SKMSKLDVEGNKLTVLSNN----LIASWTMLTELIASKNLLN  197 (429)
Q Consensus       145 ~~~~~~~~-----~~~l~~~-~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~  197 (429)
                      ..|.+...     ...+... ..++.++++.|.+......    .+..++.++++.++.|.+.
T Consensus       241 ~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  241 ASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            66655521     2233334 5667777777776643322    2344567777777777664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.44  E-value=0.021  Score=30.54  Aligned_cols=21  Identities=19%  Similarity=0.096  Sum_probs=14.3

Q ss_pred             ccceeeccccCCCcccccccccc
Q 014200          403 ASLQVKFSDLVTNKESCISGCYL  425 (429)
Q Consensus       403 ~~L~~L~~~l~~n~i~~i~~~~~  425 (429)
                      ++|++|+  +++|.|+.||+..+
T Consensus         2 ~~L~~L~--L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELD--LSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEE--CCCCcCCcCCHHHc
Confidence            4667777  77777777776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.44  E-value=0.021  Score=30.54  Aligned_cols=21  Identities=19%  Similarity=0.096  Sum_probs=14.3

Q ss_pred             ccceeeccccCCCcccccccccc
Q 014200          403 ASLQVKFSDLVTNKESCISGCYL  425 (429)
Q Consensus       403 ~~L~~L~~~l~~n~i~~i~~~~~  425 (429)
                      ++|++|+  +++|.|+.||+..+
T Consensus         2 ~~L~~L~--L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELD--LSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEE--CCCCcCCcCCHHHc
Confidence            4667777  77777777776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.57  E-value=0.05  Score=29.00  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=16.8

Q ss_pred             hhcCeeeccCCCCccCChhhhh
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYK   30 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~   30 (429)
                      +.|+.|++++|++..+|..+|+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4677888888888888877765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.57  E-value=0.05  Score=29.00  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=16.8

Q ss_pred             hhcCeeeccCCCCccCChhhhh
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYK   30 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~   30 (429)
                      +.|+.|++++|++..+|..+|+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4677888888888888877765

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.15  E-value=0.0026  Score=53.84  Aligned_cols=86  Identities=22%  Similarity=0.248  Sum_probs=43.2

Q ss_pred             ccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEE
Q 014200           64 LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK  143 (429)
Q Consensus        64 ~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~  143 (429)
                      +..++..+.||++.|.+..+...|+-++.+..|+++.|++..+|..++....+..+....|.....|.++...+.++.++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            34444555555555554444444444445555555555555555555555555555555555555555555555555555


Q ss_pred             cCCCcc
Q 014200          144 ASNNCI  149 (429)
Q Consensus       144 l~~~~~  149 (429)
                      ..++.+
T Consensus       118 ~k~~~~  123 (326)
T KOG0473|consen  118 QKKTEF  123 (326)
T ss_pred             hccCcc
Confidence            555443

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.97  E-value=0.025  Score=29.52  Aligned_cols=16  Identities=38%  Similarity=0.578  Sum_probs=8.0

Q ss_pred             cCCCcEEeCCCCcccc
Q 014200          379 AGEITKLDLSRNSIQE  394 (429)
Q Consensus       379 ~~~L~~L~ls~n~i~~  394 (429)
                      +++|++|+|++|+|++
T Consensus         1 ~~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    1 NPNLETLDLSNNQITD   16 (24)
T ss_dssp             -TT-SEEE-TSSBEHH
T ss_pred             CCCCCEEEccCCcCCH
Confidence            3556666666666654

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.89  E-value=0.0038  Score=52.88  Aligned_cols=87  Identities=16%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             ccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEe
Q 014200           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (429)
Q Consensus        41 ~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~  120 (429)
                      ++..+..+.|+++.+++..+...|+-+..+..|+++.|.+..+|..+.....+..++...|..+..|..++..+++++++
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE  117 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence            44456678888888877776666676777788888888888788888777778888888777777888888888888888


Q ss_pred             cCCCCCC
Q 014200          121 CSSNQLK  127 (429)
Q Consensus       121 l~~~~l~  127 (429)
                      .-++.+.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            8777654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=91.05  E-value=0.15  Score=27.04  Aligned_cols=18  Identities=28%  Similarity=0.580  Sum_probs=11.4

Q ss_pred             CCCcEEeCCCCccccCCh
Q 014200          380 GEITKLDLSRNSIQELPP  397 (429)
Q Consensus       380 ~~L~~L~ls~n~i~~~~~  397 (429)
                      ++|+.|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            346666666666666665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.42  E-value=0.73  Score=24.55  Aligned_cols=16  Identities=31%  Similarity=0.154  Sum_probs=9.9

Q ss_pred             ccceeeccccCCCccccc
Q 014200          403 ASLQVKFSDLVTNKESCI  420 (429)
Q Consensus       403 ~~L~~L~~~l~~n~i~~i  420 (429)
                      .+|+.|+  +++|+|+.|
T Consensus         2 ~~L~~L~--L~~NkI~~I   17 (26)
T smart00365        2 TNLEELD--LSQNKIKKI   17 (26)
T ss_pred             CccCEEE--CCCCcccee
Confidence            4566666  666666654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=82.20  E-value=1.1  Score=24.30  Aligned_cols=15  Identities=33%  Similarity=0.578  Sum_probs=9.3

Q ss_pred             CCCcEEeCCCCcccc
Q 014200          380 GEITKLDLSRNSIQE  394 (429)
Q Consensus       380 ~~L~~L~ls~n~i~~  394 (429)
                      ++|++|||++|.|++
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            456666666666653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	429
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		4e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		4e-09
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		7e-07
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		7e-07
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		1e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-06
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		2e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		2e-06
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		3e-06
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-06
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		4e-06
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		9e-06
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		1e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		2e-05
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		5e-04
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		2e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		2e-05
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		5e-04
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		2e-05
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		6e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		3e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		7e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		3e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		7e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		3e-05
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		4e-05
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		4e-05
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		4e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		7e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		4e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		6e-05
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		5e-05
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		5e-05
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		6e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		2e-04
3cvr_A	571	Crystal Structure Of The Full Length Ipah3 Length =		3e-04
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		6e-04
4eco_A	636	Crystal Structure Of A Hypothetical Protein (Bacegg		8e-04

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           LD+   ++  +S N I  +  LT L  + N L  +P  I +LS L  LDL  NR+ S+P+
Sbjct: 229 LDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  C  L  FY  +N ++ LP E G L  L  L +  N L++
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 117/232 (50%), Gaps = 12/232 (5%)
Query: 46  DLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI 103
           D   L L +N+I +L K+D + L  L  L + +NK+S++   A   L  L+ L +S N +
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114
Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCI--TSLPEDLADCS 160
           ++IP  + S+  LV+     N+++++P  +   L N++  +   N +  +       D  
Sbjct: 115 VEIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRI 219
           K++ L +   KLT +  +L  +   L EL    N +  +  E +   S+L RL L  N+I
Sbjct: 173 KLNYLRISEAKLTGIPKDLPET---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI 229
Query: 220 LSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
             I + S+S   +L E ++ NN LS +PA L  L  L  + LH+N + +  V
Sbjct: 230 RMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 90/207 (43%), Gaps = 42/207 (20%)
Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P L  L+VS N+L+ LPA   EL  L + +    S+  +P      + L +   S NQL 
Sbjct: 141 PGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLP------SGLQELSVSDNQLA 194
Query: 128 ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
            LP+       L    A NN +TSLP   A  S + +L V GN+LT L            
Sbjct: 195 SLPTLPSELYKL---WAYNNRLTSLP---ALPSGLKELIVSGNRLTSLPV---------- 238
Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
                      +P      S L  L +  NR+ S+P   SG  SL+ +    N L+ LP 
Sbjct: 239 -----------LP------SELKELMVSGNRLTSLPMLPSGLLSLSVY---RNQLTRLPE 278
Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQ 274
            L  LS   T++L  N L E  ++A +
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALR 305

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 105/229 (45%), Gaps = 34/229 (14%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L++ +NN++ L  DL   PLL  L VS+N+L +LP  +     LK +DV  NS+ K+
Sbjct: 113 LKSLLVDNNNLKALS-DLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL 168
Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
           PD   S   +      +NQL+ELP  L     L+   A NN +  LP DL        L 
Sbjct: 169 PDLPPSLEFIA---AGNNQLEELP-ELQNLPFLTAIYADNNSLKKLP-DLP-------LS 216
Query: 167 VEGNKLTVLSNNL------IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL 220
           +E     V  NN+      + +   LT + A  NLL  +P+   SL  L   D +   + 
Sbjct: 217 LES---IVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP 273
Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            +P S++        + G   LS LP        L  L+  SN+++  C
Sbjct: 274 ELPQSLTFLDVSENIFSG---LSELPP------NLYYLNASSNEIRSLC 313

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           + P E      +V+  CS+  LK LP  + R  ++++     N  T +P++L++   ++ 
Sbjct: 3   RCPTECTCLDTVVR--CSNKGLKVLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTL 58
Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           +D+  N+++ LSN   ++ T L  LI S N L  + P T   L  L  L LH N I  +P
Sbjct: 59  IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118
Query: 224 -SSISGCCSLAEFYMGNNAL 242
             + +   +L+   +G N L
Sbjct: 119 EGAFNDLSALSHLAIGANPL 138

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 214
           L + + ++ L + GN+L  L N +    T L EL+  +N L  +P+ +   L+ L  L L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           + N++ S+P  +     +L    + NN L +LP     KL++L  L L+ NQLK
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM 199
           ++ + ++  +TS+P  +   S  ++L++E NKL  L + +    T LT+L  S+N +  +
Sbjct: 10  TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67
Query: 200 PETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLG 256
           P+ +   L++L  L LH+N++ S+P+ +      L E  +  N L ++P     +L+ L 
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ 127
Query: 257 TLDLHSN 263
            + LH+N
Sbjct: 128 KIWLHTN 134

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           I+A+N+  K  + ++ LP +  L +  NKL ++ +A+ EL  L  L ++ N +  +P+ +
Sbjct: 46  IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGV 104
Query: 111 GSA-TALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPEDLAD-CSKMSKLDV 167
               T L +     NQL+ LP     +  NL+    ++N + SLP+ + D  + +++LD+
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLD---LHQN 217
             N+L  L   +    T L +L   +N L  +P+  G   RL  L    LH N
Sbjct: 165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD--GVFDRLTSLQYIWLHDN 215

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 3/114 (2%)
Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDL 214
           L + + ++ L + GN+L  L N +    T L EL+  +N L  +P+ +   L+ L  L+L
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
             N++ S+P  +     +L E  +  N L +LP     KL++L  L L+ NQLK
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 114/304 (37%), Gaps = 78/304 (25%)
Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI- 103
           LQ+L L +N    K+   L N   L  L++S N LS  +P+++G L  L+ L +  N + 
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 104 MKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT------------ 150
            +IP E+     L       N L  E+PS L  C NL+    SNN +T            
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 151 -------------SLPEDLADCSKMSKLDVEGNKL--TVLSNNLIASWTMLTELIASKNL 195
                        ++P +L DC  +  LD+  N    T+ +     S  +    IA K  
Sbjct: 513 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 572
Query: 196 L----NGMPE-----------------------------------------TIGSLSRLI 210
           +    +GM +                                         T  +   ++
Sbjct: 573 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 632
Query: 211 RLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEY 268
            LD+  N +   IP  I     L    +G+N +S  +P E+G L  L  LDL SN+L   
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 269 CVEA 272
             +A
Sbjct: 693 IPQA 696

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 114/304 (37%), Gaps = 78/304 (25%)
Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI- 103
           LQ+L L +N    K+   L N   L  L++S N LS  +P+++G L  L+ L +  N + 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 104 MKIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT------------ 150
            +IP E+     L       N L  E+PS L  C NL+    SNN +T            
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 151 -------------SLPEDLADCSKMSKLDVEGNKL--TVLSNNLIASWTMLTELIASKNL 195
                        ++P +L DC  +  LD+  N    T+ +     S  +    IA K  
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575
Query: 196 L----NGMPE-----------------------------------------TIGSLSRLI 210
           +    +GM +                                         T  +   ++
Sbjct: 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635
Query: 211 RLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEY 268
            LD+  N +   IP  I     L    +G+N +S  +P E+G L  L  LDL SN+L   
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 269 CVEA 272
             +A
Sbjct: 696 IPQA 699

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSR 208
           TS+P  +   ++ + LD+E N L  L N +    T LT+L    N L  +P  +   L+ 
Sbjct: 20  TSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 209 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 266
           L  L+L  N++ S+P+ +      L E  +  N L +LP     KL++L  L L+ NQLK
Sbjct: 78  LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 98  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 155
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 156 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 209
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 210 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 263
Query: 217 NRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 100/230 (43%), Gaps = 22/230 (9%)
Query: 44  AVDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAIGELH---MLKSLDVS 99
           A  +QKL +  N I  L     +N+PLLTVL +  N LS LP  I   H    L +L +S
Sbjct: 92  AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI--FHNTPKLTTLSMS 149
Query: 100 FNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
            N++ +I D+   A T+L     SSN+L  +  SL   L    F A  N   +L   LA 
Sbjct: 150 NNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL----FHA--NVSYNLLSTLAI 203
Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--LIRLDLHQ 216
              + +LD   N + V+   +    T+L      K   N + +T   L+   L+ +DL  
Sbjct: 204 PIAVEELDASHNSINVVRGPVNVELTIL------KLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 217 NRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           N +  I          L   Y+ NN L AL      +  L  LDL  N L
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 307

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 37  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 97  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 144

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 97  DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 155
           D S   + ++PD++   T +   + + NQL+ LP++   R   L+      N I+ L  +
Sbjct: 20  DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Query: 156 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 211
           L  C K+  L V   + N+L+ LS+   A  T LTEL    N +  +          LI 
Sbjct: 78  L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 135
Query: 212 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 267
           LDL  N + S    +     +L E  + NN + AL +E   +   S L  L+L SNQ+KE
Sbjct: 136 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 195
Query: 268 Y---CVEA 272
           +   C  A
Sbjct: 196 FSPGCFHA 203

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 76/174 (43%), Gaps = 26/174 (14%)
Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKAS-------------------NNCITSLPEDL- 156
           DCSS +L  +PS++    + L+L   K S                   +N + +LP  + 
Sbjct: 22  DCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLH 215
            +   +  L V  NKL  L   +      L EL   +N L  + P    SL++L  L L 
Sbjct: 82  KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 216 QNRILSIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKE 267
            N + S+P  +     SL E  + NN L  +P     KL++L TL L +NQLK 
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 32  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 92  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 139

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 97  DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 155
           D S   + ++PD++   T +   + + NQL+ LP++   R   L+      N I+ L  +
Sbjct: 15  DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 156 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 211
           L  C K+  L V   + N+L+ LS+   A  T LTEL    N +  +          LI 
Sbjct: 73  L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 130
Query: 212 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 267
           LDL  N + S    +     +L E  + NN + AL +E   +   S L  L+L SNQ+KE
Sbjct: 131 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 190
Query: 268 Y---CVEA 272
           +   C  A
Sbjct: 191 FSPGCFHA 198

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 70  LTVLNVSHNKLSELPAA-IGELHMLKSLDVSFNSIMKIPDEIGSATALVK-FDCSSNQLK 127
           +TVLN++HN+L  LPAA       L SLDV FN+I K+  E+     ++K  +   N+L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 128 ELP-SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT 173
           +L   +   C NL++    +N I  +  +       +  LD+  N L+
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS 134

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 97  DVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED 155
           D S   + ++PD++   T +   + + NQL+ LP++   R   L+      N I+ L  +
Sbjct: 10  DCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Query: 156 LADCSKMSKLDV---EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIR 211
           L  C K+  L V   + N+L+ LS+   A  T LTEL    N +  +          LI 
Sbjct: 68  L--CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 212 LDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAE---LGKLSKLGTLDLHSNQLKE 267
           LDL  N + S    +     +L E  + NN + AL +E   +   S L  L+L SNQ+KE
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 268 Y---CVEA 272
           +   C  A
Sbjct: 186 FSPGCFHA 193

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  LP   L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  LP   L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 124 NQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIA 181
           NQ+ +L P      +NL +    +N + +LP  + D  ++++ LD+  N+LTVL + +  
Sbjct: 50  NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNN 240
               L EL    N L  +P  I  L+ L  L L QN++ SIP  +     SL   Y+  N
Sbjct: 110 RLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  LP   L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 P-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           P   +     L +     N+LK LP  L                      L    K+ KL
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLEKL 153
Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
            +  N+LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 154 SLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 76/162 (46%), Gaps = 7/162 (4%)
Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C   QL  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRQLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSI 226
           +  +LT L  +   +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P  ++
Sbjct: 63  DRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 227 SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKE 267
            G   L E Y+  N L  LP   L    KL  L L +NQL E
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 57  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 116 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 151
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 71/174 (40%), Gaps = 28/174 (16%)
Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L L    + KL+ D   LP+L  L++SHN+L  LP     L  L  LDVSFN +  +
Sbjct: 58  LTQLNLDRCELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 116
Query: 107 PDEIGSATALVKFD---CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
           P  +G+   L +        N+LK LP  L                      L    K+ 
Sbjct: 117 P--LGALRGLGELQELYLKGNELKTLPPGL----------------------LTPTPKLE 152
Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN 217
           KL +  N LT L   L+     L  L+  +N L  +P+       L    LH N
Sbjct: 153 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 206

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Query: 90  LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 149
           L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     NN I
Sbjct: 62  LNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQI 119
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
           T + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +L+ L
Sbjct: 120 TDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLANLTTL 175
Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQLK+  
Sbjct: 176 ERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDIG 233
Query: 270 VEAC 273
             A 
Sbjct: 234 TLAS 237

>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3 Length = 571

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 77/183 (42%), Gaps = 24/183 (13%)
Query: 68  PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK 127
           P +TVL ++ N L  LP     L  L + D   +++ ++P       +L   D  +NQL 
Sbjct: 80  PQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELP------ASLKHLDVDNNQLT 133
Query: 128 ELPS--SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
            LP   +L   +N     A NN +T LPE     + +  L V  N+LT L   L  S   
Sbjct: 134 XLPELPALLEYIN-----ADNNQLTXLPE---LPTSLEVLSVRNNQLTFLP-ELPES--- 181
Query: 186 LTELIASKNLLNGMP----ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
           L  L  S NLL  +P        S    I     +NRI  IP +I          + +N 
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241
Query: 242 LSA 244
           LS+
Sbjct: 242 LSS 244

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Query: 90  LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 149
           L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     NN I
Sbjct: 62  LNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQI 119
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
           T + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +L+ L
Sbjct: 120 TDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFSSNQVTDL-KPLANLTTL 175
Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQLK+  
Sbjct: 176 ERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDIG 233
Query: 270 VEAC 273
             A 
Sbjct: 234 TLAS 237

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 94/184 (51%), Gaps = 8/184 (4%)
Query: 90  LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 149
           L+ L  ++ S N +  I   + + T LV    ++NQ+ ++ + L    NL+     NN I
Sbjct: 62  LNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI-TPLANLTNLTGLTLFNNQI 119
Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
           T + + L + + +++L++  N ++ +S   ++  T L +L  S N +  + + + +L+ L
Sbjct: 120 TDI-DPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDL-KPLANLTTL 175
Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            RLD+  N++  I S ++   +L      NN +S +   LG L+ L  L L+ NQLK+  
Sbjct: 176 ERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDIG 233
Query: 270 VEAC 273
             A 
Sbjct: 234 TLAS 237

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 17/190 (8%)
Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98
           D+ +    LQ   +    + +L +  +    L  L ++ N L  LPA+I  L+ L+ L +
Sbjct: 98  DQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157
Query: 99  -SFNSIMKIPDEIGSATA---------LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
            +   + ++P+ + S  A         L         ++ LP+S+    NL   K  N+ 
Sbjct: 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217
Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSNN--LIASWTMLTELIAS--KNLLNGMPETIG 204
           +++L   +    K+ +LD+ G   T L N   +      L  LI     NLL  +P  I 
Sbjct: 218 LSALGPAIHHLPKLEELDLRG--CTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIH 274
Query: 205 SLSRLIRLDL 214
            L++L +LDL
Sbjct: 275 RLTQLEKLDL 284

>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329) From Bacteroides Eggerthii Dsm 20697 At 2.70 A Resolution Length = 636

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 24/166 (14%)
Query: 42  WEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAA--------IGELHM 92
           ++ +++  + L++N I K  KE       L+ +N+  N L+E+P              ++
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYL 489
Query: 93  LKSLDVSFNSIMKIPDEIGSAT--ALVKFDCSSNQLKELPSSLGRCLNLSDFKA------ 144
           L S+D+ FN + K+ D+  + T   LV  D S N   + P+   + LN S  K       
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT---QPLNSSTLKGFGIRNQ 546
Query: 145 ----SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
                N  +   PE +  C  +++L +  N +  ++  +  + ++L
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVL 592

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	429
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-51
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-51
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-48
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-44
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-46
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-40
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-43
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-38
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-43
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-42
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-38
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-34
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-36
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-30
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-31
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-27
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-26
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-33
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-30
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-31
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-22
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-28
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-24
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-25
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-26
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-27
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-25
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-26
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-26
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-26
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-25
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-22
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-18
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-20
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-17
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-11
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-09
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  174 bits (443), Expect = 3e-51
 Identities = 57/289 (19%), Positives = 97/289 (33%), Gaps = 25/289 (8%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNL-----PLLTVLNVSHNKLSELPAAIGELHML 93
              W   +     +       LK     L     P    L +    L + P     L  L
Sbjct: 47  HSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHL 106

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS-NNCITSL 152
           + + +    +M++PD +     L     + N L+ LP+S+     L +        +T L
Sbjct: 107 QHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTEL 166

Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRL 212
           PE LA                  ++        L  L      +  +P +I +L  L  L
Sbjct: 167 PEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 213 DLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAELGKLSKLGTLDL-HSNQLKEYCV 270
            +  + + ++  +I     L E  + G  AL   P   G  + L  L L   + L    +
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL 271

Query: 271 EACQLR-LSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           +  +L  L  LDL     LS LP  I ++     +L+  +    L    
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  134 bits (339), Expect = 4e-36
 Identities = 55/366 (15%), Positives = 102/366 (27%), Gaps = 98/366 (26%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHM--LKSLDVSFNSI 103
             Q+   A  N         N     +   +   L      + +       +L++    +
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL 93

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
            + PD+    + L      +  L ELP ++ +   L     + N + +LP  +A  +++ 
Sbjct: 94  PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +L +                            L  +PE + S                  
Sbjct: 154 ELSIRAC-----------------------PELTELPEPLASTD--------------AS 176

Query: 224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 283
               G  +L    +    + +LPA +  L  L                        L + 
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNL----------------------KSLKIR 214

Query: 284 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST 343
           N+ LS L P I  +  L +L L G                          P         
Sbjct: 215 NSPLSALGPAIHHLPKLEELDLRGCTALR-------------------NYPPI------- 248

Query: 344 TKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEAGEITKLDLSRNS-IQELPPELSS 401
                      L    K L L+  + L  +P +I    ++ KLDL     +  LP  ++ 
Sbjct: 249 -----FGGRAPL----KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

Query: 402 CASLQV 407
             +  +
Sbjct: 300 LPANCI 305

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  128 bits (325), Expect = 4e-34
 Identities = 51/316 (16%), Positives = 93/316 (29%), Gaps = 54/316 (17%)

Query: 107 PDEIGSATALVKFDCS-SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                 ++         S  L+     L +     +    +          A+ +     
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA---DRNRWHSAWRQANSNNPQIE 61

Query: 166 DVEGNKLTVLSNNL-IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
              G  L   ++ L  A+      L      L   P+    LS L  + +    ++ +P 
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD 121

Query: 225 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDL-HSNQLKEYCVEACQLR------- 276
           ++     L    +  N L ALPA +  L++L  L +    +L E                
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 277 ---LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
              L  L L    +  LP  I  +  L+ L +  +PL  L  ++ +      L  L    
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH------LPKL---- 231

Query: 334 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEAGEITKLDLS-RNS 391
                                     +EL L G   L   P        + +L L   ++
Sbjct: 232 --------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 392 IQELPPELSSCASLQV 407
           +  LP ++     L+ 
Sbjct: 266 LLTLPLDIHRLTQLEK 281

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 97.3 bits (243), Expect = 8e-23
 Identities = 36/173 (20%), Positives = 60/173 (34%), Gaps = 8/173 (4%)

Query: 14  LNLS-NRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
           L++     L ++P  +                V+LQ L L    I  L   + NL  L  
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQ----GLVNLQSLRLEWTGIRSLPASIANLQNLKS 210

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVS-FNSIMKIPDEIGSATALVKFDCSS-NQLKELP 130
           L + ++ LS L  AI  L  L+ LD+    ++   P   G    L +      + L  LP
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 131 SSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
             + R   L          ++ LP  +A       + V  +    L  +   +
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  180 bits (457), Expect = 8e-51
 Identities = 76/314 (24%), Positives = 119/314 (37%), Gaps = 45/314 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+    L  +P+ +  +               +  L++  NN+  L      L     
Sbjct: 44  VLNVGESGLTTLPDCLPAH---------------ITTLVIPDNNLTSLPALPPEL---RT 85

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           L VS N+L+ LP     L  L         +  +P      + L K     NQL  LP  
Sbjct: 86  LEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP------SGLCKLWIFGNQLTSLPVL 139

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                 L +   S+N + SLP      S++ KL    N+LT L        + L EL  S
Sbjct: 140 PP---GLQELSVSDNQLASLPALP---SELCKLWAYNNQLTSLPMLP----SGLQELSVS 189

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N L  +P     L +L     + NR+ S+P+  S    L E  +  N L++LP    +L
Sbjct: 190 DNQLASLPTLPSELYKL---WAYNNRLTSLPALPS---GLKELIVSGNRLTSLPVLPSEL 243

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT 312
            +L    +  N+L    +    L    L +  N L+ LP  +  +++   + L GNPL  
Sbjct: 244 KEL---MVSGNRLTSLPMLPSGLL--SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 298

Query: 313 LRSSLVNGPTPALL 326
                +   T A  
Sbjct: 299 RTLQALREITSAPG 312

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  148 bits (376), Expect = 2e-39
 Identities = 84/369 (22%), Positives = 131/369 (35%), Gaps = 93/369 (25%)

Query: 39  DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDV 98
             W  A   ++       ++K++  L N     VLNV  + L+ LP  +     + +L +
Sbjct: 13  SAWRRAAPAEESRGRAAVVQKMRACLNNG--NAVLNVGESGLTTLPDCLPAH--ITTLVI 68

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N++  +P        L   + S NQL  LP      L LS F      + +LP  L  
Sbjct: 69  PDNNLTSLPALPPE---LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGL-- 123

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
                KL + GN+LT L          L EL  S N L  +P     L +L     + N+
Sbjct: 124 ----CKLWIFGNQLTSLPVLP----PGLQELSVSDNQLASLPALPSELCKL---WAYNNQ 172

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS 278
           + S+P   S    L E  + +N L++LP    +L KL                       
Sbjct: 173 LTSLPMLPS---GLQELSVSDNQLASLPTLPSELYKL----------------------- 206

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
                NN L+ LP        L++L+++GN L +L         P L   L+        
Sbjct: 207 --WAYNNRLTSLPALPSG---LKELIVSGNRLTSL---------PVLPSELK-------- 244

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                                 EL + G  L+++P        +  L + RN +  LP  
Sbjct: 245 ----------------------ELMVSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPES 279

Query: 399 LSSCASLQV 407
           L   +S   
Sbjct: 280 LIHLSSETT 288

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 6/143 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L++LI++ N +  L      L     L VS N+L+ LP     L    SL V  N + ++
Sbjct: 223 LKELIVSGNRLTSLPVLPSEL---KELMVSGNRLTSLPMLPSGL---LSLSVYRNQLTRL 276

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
           P+ +   ++    +   N L E      R +  +   +       +    A     +   
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHL 336

Query: 167 VEGNKLTVLSNNLIASWTMLTEL 189
              + L        A        
Sbjct: 337 AAADWLVPAREGEPAPADRWHMF 359

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  175 bits (445), Expect = 4e-48
 Identities = 75/414 (18%), Positives = 143/414 (34%), Gaps = 66/414 (15%)

Query: 47  LQKLILAHNN-IEKLKEDLRNLPLLTVLNVSHNKLS----------ELPAAIGELHMLKS 95
           L  + L +   + +L + L +LP L  LN++ N+             L         ++ 
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 96  LDVSFNSIMKIPDE--IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153
             + +N++ + P    +     L   DC  N+++ L +  G  + L+D K   N I  +P
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIP 611

Query: 154 EDL-ADCSKMSKLDVEGNKLTVLSNNL-IASWTMLTELIASKNLLNGMPETIGS------ 205
           ED  A   ++  L    NKL  + N     S  ++  +  S N +      I        
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671

Query: 206 LSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALPAE--------LGKLSKLG 256
                 + L  N I   P+ +      ++   + NN ++++P                L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 257 TLDLHSNQLKE--YCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
           T+DL  N+L        A  L  LS +D+S N  S  P +    + L+   +     R  
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ--RDA 789

Query: 314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP 373
             + +    P  +    S L                           +L +   ++  + 
Sbjct: 790 EGNRILRQWPTGITTCPS-L--------------------------IQLQIGSNDIRKVD 822

Query: 374 SEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYW 427
            ++    ++  LD++ N    +    S C  ++     L+ +K   I GC    
Sbjct: 823 EKLTP--QLYILDIADNPNISIDV-TSVCPYIEAGMYVLLYDKTQDIRGCDALG 873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  162 bits (412), Expect = 9e-44
 Identities = 63/327 (19%), Positives = 119/327 (36%), Gaps = 42/327 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE--DLRNLPLL 70
           SLN++                 A + D   +   +Q   + +NN+E+      L+ +  L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPK---IQIFYMGYNNLEEFPASASLQKMVKL 575

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKEL 129
            +L+  HNK+  L A  G    L  L + +N I +IP++  +    +     S N+LK +
Sbjct: 576 GLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI 634

Query: 130 PS--SLGRCLNLSDFKASNNCITSLPEDL------ADCSKMSKLDVEGNKLTVLSNNLIA 181
           P+  +      +     S N I S   ++            S + +  N++      L A
Sbjct: 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 182 SWTMLTELIASKNLLNGMPE--------TIGSLSRLIRLDLHQNRILSIPSSISGCC--S 231
           + + ++ +I S NL+  +PE           +   L  +DL  N++ S+           
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 232 LAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-L 290
           L+   +  N  S+ P +    S+L    +                    D   N +    
Sbjct: 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ----------------RDAEGNRILRQW 798

Query: 291 PPEIGKMTTLRKLLLTGNPLRTLRSSL 317
           P  I    +L +L +  N +R +   L
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  148 bits (376), Expect = 4e-39
 Identities = 59/403 (14%), Positives = 129/403 (32%), Gaps = 57/403 (14%)

Query: 47  LQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIG----------------- 88
           +  L LA    +    + +  L  L VL+   +  +      G                 
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 89  ---------------ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
                             +L+        +  I  +   +    +    +N++  +  ++
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL-IAS 192
            R   L     +N+  T               + +  K         ++   LT++ + +
Sbjct: 445 QRLTKLQIIYFANSPFTYDNI----AVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILS----------IPSSISGCCSLAEFYMGNNAL 242
              +  +P+ +  L  L  L++  NR +S          +         +  FYMG N L
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

Query: 243 SALPAE--LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT- 299
              PA   L K+ KLG LD   N+++        ++L+ L L  N +  +P +    T  
Sbjct: 561 EEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ 620

Query: 300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 359
           +  L  + N L+ + +          +  +      N+           +     ++ ++
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYV-MGSV--DFSYNKIGSEGRNISCSMDDYKGINAST 677

Query: 360 KELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPELSS 401
             ++L    +   P+E+      I+ + LS N +  +P     
Sbjct: 678 --VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLK 718

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  135 bits (342), Expect = 1e-34
 Identities = 53/404 (13%), Positives = 111/404 (27%), Gaps = 81/404 (20%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L N   +T L+++       +P AIG+L  LK L    +S        G           
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE 378

Query: 123 S--------------------------------NQLKELPSSLGRCLNLSDFKASNNCIT 150
                                             ++K +       L  +      N IT
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLI 210
            + + +   +K+  +    +  T  +  +                      +  +L  L 
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA----KQYENEELSWSNLKDLT 494

Query: 211 RLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS----------ALPAELGKLSKLGTLD 259
            ++L+    +  +P  +     L    +  N              L  +     K+    
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 260 LHSNQLKEYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS 316
           +  N L+E+   A   ++  L +LD  +N +  L    G    L  L L  N +  +   
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNVKLTDLKLDYNQIEEIPED 613

Query: 317 LVNGPTPALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS 370
                    ++ L         +P   +                +      +      + 
Sbjct: 614 FCAFTD--QVEGLGFSHNKLKYIPNIFN----------AKSVYVM----GSVDFSYNKIG 657

Query: 371 AIPSEIWEAGEI------TKLDLSRNSIQELPPE-LSSCASLQV 407
           +    I  + +       + + LS N IQ+ P E  ++ + +  
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 81.8 bits (202), Expect = 9e-17
 Identities = 33/178 (18%), Positives = 62/178 (34%), Gaps = 25/178 (14%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLR--NLPLLT 71
           + LSN  +  +P    K  D       +     L  + L  N +  L +D R   LP L+
Sbjct: 702 IILSNNLMTSIPENSLKPKDGN-----YKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLS 756

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            ++VS+N  S  P        LK+  +      +                 +  L++ P+
Sbjct: 757 NMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAE----------------GNRILRQWPT 800

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
            +  C +L   +  +N I  + E L    ++  LD+  N    +    +  +      
Sbjct: 801 GITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMY 856

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  169 bits (431), Expect = 6e-47
 Identities = 71/404 (17%), Positives = 137/404 (33%), Gaps = 45/404 (11%)

Query: 55  NNIEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPD----- 108
              +       NL  LT + V +     +LP  +  L  ++ ++V+ N  +         
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 109 ----EIGSATALVKFDCSSNQLKEL--PSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
               +      +       N LK     +SL +   L   +   N +           K+
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLIRLDLHQNRI- 219
           + L++  N++T +  N       +  L  + N L  +P      S+S +  +D   N I 
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 220 -------LSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
                    +  +     +++   + NN +S  P E     S L +++L  N L E    
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 272 ACQL---------RLSVLDLSNNSLSGLPPEI--GKMTTLRKLLLTGNPLRTLRSSLVNG 320
           + +           L+ +DL  N L+ L  +     +  L  + L+ N      +  +N 
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS 535

Query: 321 PTPALLKYLRSRLPENEDS-EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA 379
            T   LK    R   +           + IT+   L     +L +   ++  +  +I   
Sbjct: 536 ST---LKGFGIRNQRDAQGNRTLREWPEGITLCPSL----TQLQIGSNDIRKVNEKITP- 587

Query: 380 GEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGC 423
             I+ LD+  N    +      C  ++     L  +K   I GC
Sbjct: 588 -NISVLDIKDNPNISIDLS-YVCPYIEAGMYMLFYDKTQDIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  163 bits (414), Expect = 1e-44
 Identities = 61/395 (15%), Positives = 136/395 (34%), Gaps = 47/395 (11%)

Query: 46  DLQKLILAHNNIEK-LKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM 104
           DL K  +  +  +K +K+  R     T +    N ++ +  A+  L  L+   +  +  +
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 105 -KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK-ASNNCITSLPEDLADCSKM 162
            +   E             + Q K          +L+D +  +   +T LP  L    +M
Sbjct: 220 AENICEAWENENSE----YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 163 SKLDVEGNKLTVLSNNL--------IASWTMLTELIASKNLLNG--MPETIGSLSRLIRL 212
             ++V  N+                      +  +    N L    +  ++  + +L  L
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGML 335

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY--C 269
           +   N++     +      LA   +  N ++ +PA   G   ++  L    N+LK     
Sbjct: 336 ECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 270 VEACQLR-LSVLDLSNNSLSG--------LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
            +A  +  +S +D S N +          L P   K   +  + L+ N +      L + 
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455

Query: 321 PTPALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
            +   L  +       + +P+N   + +   ++   +          + L    L+ +  
Sbjct: 456 GS--PLSSINLMGNMLTEIPKNSLKDENENFKNTYLL--------TSIDLRFNKLTKLSD 505

Query: 375 EIWEAG--EITKLDLSRNSIQELPPELSSCASLQV 407
           +        +  +DLS NS  + P +  + ++L+ 
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG 540

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  145 bits (367), Expect = 4e-38
 Identities = 57/392 (14%), Positives = 130/392 (33%), Gaps = 44/392 (11%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSF 100
           +  L L       ++ + +  L  L VL +  +          P  I      +      
Sbjct: 83  VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142

Query: 101 NSIMK-IPDEIG--SATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDL 156
               K   D       + L+K   +S+   K +  S    L  +     +N IT + + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV 202

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
              +K+ +  +  +     +                            +L  L  ++++ 
Sbjct: 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVEVYN 258

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALSALP---------AELGKLSKLGTLDLHSNQLK 266
              L  +P+ +     +    +  N   +           A+     K+  + +  N LK
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318

Query: 267 EYCVEA--CQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
            + VE    +++ L +L+   N L G  P  G    L  L L  N +  + ++       
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTE- 377

Query: 324 ALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELS-LEGMNLSAIPSEI 376
             ++ L         +P   D++        +++ + +  +  E+  ++G N   +    
Sbjct: 378 -QVENLSFAHNKLKYIPNIFDAK-------SVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 377 WEAGEITKLDLSRNSIQELPPE-LSSCASLQV 407
           ++   ++ ++LS N I + P E  S+ + L  
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSS 461

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (277), Expect = 3e-26
 Identities = 42/355 (11%), Positives = 99/355 (27%), Gaps = 85/355 (23%)

Query: 64  LRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS 122
           L +   +T L++     S  +P AIG+L  L+ L +  +                     
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE------------------K 118

Query: 123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
            N+    P  +   ++    +            +    +    D+  + +          
Sbjct: 119 VNERLFGPKGISANMSDEQKQKMRMHYQ--KTFVDYDPREDFSDLIKDCIN--------- 167

Query: 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
                    S      + ++     +  ++    N I  +  ++     L +FYMGN+  
Sbjct: 168 ---------SDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPF 218

Query: 243 SALPAE-------LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEI 294
            A                +  T DL  + LK+         L+ +++ N      LP  +
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKD---------LTDVEVYNCPNLTKLPTFL 269

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATR 354
             +  ++ + +  N   +      +    A                              
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK----------------------- 306

Query: 355 LSVTSKELSLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQV 407
                + + +   NL    + + + +  ++  L+   N ++   P   S   L  
Sbjct: 307 ----IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLAS 357

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  108 bits (271), Expect = 2e-25
 Identities = 40/234 (17%), Positives = 87/234 (37%), Gaps = 27/234 (11%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
           +++ S   +  V  + +   D        ++ +++  + L++N I K  KE       L+
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPT-----PFKGINVSSINLSNNQISKFPKELFSTGSPLS 460

Query: 72  VLNVSHNKLSELPA--------AIGELHMLKSLDVSFNSIMKIPDEI--GSATALVKFDC 121
            +N+  N L+E+P              ++L S+D+ FN + K+ D+    +   LV  D 
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520

Query: 122 SSNQLKELPSSLGRCLNLSDFK-------ASNNCITSLPEDLADCSKMSKLDVEGNKLTV 174
           S N   + P+       L  F          N  +   PE +  C  +++L +  N +  
Sbjct: 521 SYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 175 LSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSIS 227
           ++  +  +   ++ L    N    +    +          L  ++   I    +
Sbjct: 581 VNEKITPN---ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 29/278 (10%), Positives = 77/278 (27%), Gaps = 56/278 (20%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL-S 221
            L+ +            A+W    EL    ++    P  ++ S  R+  L L        
Sbjct: 41  ALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSNGRVTGLSLEGFGASGR 96

Query: 222 IPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEA---- 272
           +P +I     L    +G++          P  +                ++  V+     
Sbjct: 97  VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156

Query: 273 ------------------------CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
                                     L+ + +   +N+++ +   + ++T LR+  +  +
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS 216

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
           P      +              ++  + ED +              L     ++ +    
Sbjct: 217 PF----VAENICEAWENENSEYAQQYKTEDLK--------WDNLKDL----TDVEVYNCP 260

Query: 369 LS-AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
               +P+ +    E+  ++++ N             +L
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  170 bits (432), Expect = 2e-46
 Identities = 92/379 (24%), Positives = 159/379 (41%), Gaps = 32/379 (8%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPA-AIGELHMLKSLDVSFNSI 103
           L  L L+ N+    +     +  LL  L +S N  S ELP   + ++  LK LD+SFN  
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 104 M-KIPDEIGSATA-LVKFDCSSNQLK-ELPSSLGRCL--NLSDFKASNNCIT-SLPEDLA 157
             ++P+ + + +A L+  D SSN     +  +L +     L +    NN  T  +P  L+
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415

Query: 158 DCSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLH 215
           +CS++  L +  N L+  + ++L  S + L +L    N+L G +P+ +  +  L  L L 
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 216 QNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEA 272
            N +   IPS +S C +L    + NN L+  +P  +G+L  L  L L +N        E 
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534

Query: 273 CQLR-LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
              R L  LDL+ N  +G +P  + K +              + ++ + G     +K   
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGK------------IAANFIAGKRYVYIKNDG 582

Query: 331 SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSR 389
            +   +        +        RLS T    ++                G +  LD+S 
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLS-TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641

Query: 390 NSIQ-ELPPELSSCASLQV 407
           N +   +P E+ S   L +
Sbjct: 642 NMLSGYIPKEIGSMPYLFI 660

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  153 bits (388), Expect = 1e-40
 Identities = 98/382 (25%), Positives = 141/382 (36%), Gaps = 61/382 (15%)

Query: 47  LQKLILAHNN----IEKLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFN 101
           L+ L L+ N+                 L  L +S NK+S ++   +     L+ LDVS N
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN 210

Query: 102 SIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLAD 158
           +    IP  +G  +AL   D S N+L  +   ++  C  L     S+N     +P     
Sbjct: 211 NFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-- 267

Query: 159 CSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQ 216
              +  L +  NK T  + + L  +   LT L  S N   G +P   GS S L  L L  
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 217 NRIL-SIP-SSISGCCSLAEFYMGNNALS-ALPAELGKLS-KLGTLDLHSNQLK----EY 268
           N     +P  ++     L    +  N  S  LP  L  LS  L TLDL SN         
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387

Query: 269 CVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
             +  +  L  L L NN  +G +PP +   + L  L L+ N L        +G  P+ L 
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL--------SGTIPSSLG 439

Query: 328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLD 386
            L                         L      L L    L   IP E+     +  L 
Sbjct: 440 SLSK-----------------------LRD----LKLWLNMLEGEIPQELMYVKTLETLI 472

Query: 387 LSRNSIQ-ELPPELSSCASLQV 407
           L  N +  E+P  LS+C +L  
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNW 494

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  146 bits (370), Expect = 3e-38
 Identities = 89/391 (22%), Positives = 148/391 (37%), Gaps = 57/391 (14%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPL-LTVLNVSHNKLS-ELPAAIGELHM--LKSLDVSFN 101
           L+ L L+ N    +L E L NL   L  L++S N  S  +   + +     L+ L +  N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 102 SIM-KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLAD 158
               KIP  + + + LV    S N L   +PSSLG    L D K   N +   +P++L  
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

Query: 159 CSKMSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQ 216
              +  L ++ N LT  + + L ++ T L  +  S N L G  P+ IG L  L  L L  
Sbjct: 465 VKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523

Query: 217 NRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQ 274
           N    +IP+ +  C SL    +  N  +  +PA + K S     +  + +   Y      
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583

Query: 275 LRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 333
            +      +     G    ++ +++T     +T             G T        S  
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY--------GGHTSPTFDNNGS-- 633

Query: 334 PENEDSEASTTKEDLITMATRLSVTS------KEL----SLEGMNLS------AIPSEIW 377
                         ++ +   +S         KE+     L  +NL       +IP E+ 
Sbjct: 634 --------------MMFL--DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677

Query: 378 EAGEITKLDLSRNSIQ-ELPPELSSCASLQV 407
           +   +  LDLS N +   +P  +S+   L  
Sbjct: 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (343), Expect = 1e-34
 Identities = 72/274 (26%), Positives = 123/274 (44%), Gaps = 14/274 (5%)

Query: 47  LQKLILAHNNIE-KLKEDLRNLPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM 104
           L+ LIL  N++  ++   L N   L  +++S+N+L+ E+P  IG L  L  L +S NS  
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

Query: 105 -KIPDEIGSATALVKFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
             IP E+G   +L+  D ++N     +P+++ +        A+N         + +    
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI---AANFIAGKRYVYIKNDGMK 584

Query: 163 SKLDVEGN--KLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRI 219
            +    GN  +   + +  +   +       +  +  G    T  +   ++ LD+  N +
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 220 L-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR 276
              IP  I     L    +G+N +S ++P E+G L  L  LDL SN+L          L 
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704

Query: 277 -LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
            L+ +DLSNN+LSG  PE+G+  T        NP
Sbjct: 705 MLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (317), Expect = 3e-31
 Identities = 82/374 (21%), Positives = 130/374 (34%), Gaps = 62/374 (16%)

Query: 64  LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM-KIPD--EIGSATALVKFD 120
           L +L  L  L +S++ ++   +       L SLD+S NS+   +     +GS + L   +
Sbjct: 73  LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132

Query: 121 CSSNQL--KELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSN 177
            SSN L      S   +  +L     S N I+ +            +L      L +  N
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH----LAISGN 188

Query: 178 NL-----IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCS 231
            +     ++    L  L  S N  +     +G  S L  LD+  N++      +IS C  
Sbjct: 189 KISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTE 248

Query: 232 LAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK----EYCVEACQLRLSVLDLSNNS 286
           L    + +N     +P     L  L  L L  N+      ++   AC   L+ LDLS N 
Sbjct: 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD-TLTGLDLSGNH 305

Query: 287 LSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
             G +PP  G  + L  L L+ N          +G  P                      
Sbjct: 306 FYGAVPPFFGSCSLLESLALSSNNF--------SGELP---------------------- 335

Query: 346 EDLITMATRLSVTSKELSLEGMNLS-AIPSEIWE-AGEITKLDLSRNSIQ-ELPPELSSC 402
            D +     L    K L L     S  +P  +   +  +  LDLS N+    + P L   
Sbjct: 336 MDTLLKMRGL----KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 403 ASLQVKFSDLVTNK 416
               ++   L  N 
Sbjct: 392 PKNTLQELYLQNNG 405

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  123 bits (310), Expect = 2e-30
 Identities = 83/381 (21%), Positives = 131/381 (34%), Gaps = 82/381 (21%)

Query: 47  LQKLILAHNNIEKL--KEDLRNLPLLTVLNVSHNKLS-ELPAAI---GELHMLKSLDVSF 100
           L+ L ++ N ++          L  L VL++S N +S               LK L +S 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 101 NSIM-KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT-SLPEDLAD 158
           N I   +   +     L   D SSN        LG C  L     S N ++      ++ 
Sbjct: 188 NKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST 245

Query: 159 CSKMSKLDVEGNKLT--VLSNNLIASWTMLTELIASKNLLNGM-PETI-GSLSRLIRLDL 214
           C+++  L++  N+    +    L      L  L  ++N   G  P+ + G+   L  LDL
Sbjct: 246 CTELKLLNISSNQFVGPIPPLPL----KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 215 HQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
             N    ++P     C  L    + +N  S  LP + L K+  L                
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGL---------------- 345

Query: 272 ACQLRLSVLDLSNNSLSG-LPPEIGKMTT-LRKLLLTGNPLR-TLRSSLVNGPTPALLKY 328
                  VLDLS N  SG LP  +  ++  L  L L+ N     +  +L   P   L   
Sbjct: 346 ------KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL--- 396

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDL 387
                                          +EL L+    +  IP  +    E+  L L
Sbjct: 397 -------------------------------QELYLQNNGFTGKIPPTLSNCSELVSLHL 425

Query: 388 SRNSIQ-ELPPELSSCASLQV 407
           S N +   +P  L S + L+ 
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRD 446

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.0 bits (206), Expect = 4e-17
 Identities = 62/297 (20%), Positives = 108/297 (36%), Gaps = 55/297 (18%)

Query: 137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196
           ++LS     N   +++   L   + +  L +  + +   S +       LT L  S+N L
Sbjct: 55  IDLSSKP-LNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSL 112

Query: 197 NGM---PETIGSLSRLIRLDLHQNRI-LSIP-SSISGCCSLAEFYMGNNALS-ALPAEL- 249
           +G      ++GS S L  L++  N +      S      SL    +  N++S A      
Sbjct: 113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172

Query: 250 --GKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
                 +L  L +  N++    V+  +   L  LD+S+N+ S   P +G  + L+ L ++
Sbjct: 173 LSDGCGELKHLAISGNKISGD-VDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 231

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS------- 359
           GN L        +G     +                     L  +   +S          
Sbjct: 232 GNKL--------SGDFSRAISTCTE----------------LKLL--NISSNQFVGPIPP 265

Query: 360 ------KELSLEGMNLS-AIPSEIWEA-GEITKLDLSRNSIQ-ELPPELSSCASLQV 407
                 + LSL     +  IP  +  A   +T LDLS N     +PP   SC+ L+ 
Sbjct: 266 LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  164 bits (416), Expect = 5e-46
 Identities = 90/406 (22%), Positives = 153/406 (37%), Gaps = 68/406 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            L L+N  L  +P                     L+ L+ + N++ +L E  ++L  L V
Sbjct: 75  ELELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQSLKSLLV 118

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
            N +   LS+LP       +L+ L VS N + K+P E+ +++ L   D  +N LK+LP  
Sbjct: 119 DNNNLKALSDLP------PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL 171

Query: 133 LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
                +L    A NN +  LPE L +   ++ +  + N L  L +        L  ++A 
Sbjct: 172 PP---SLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLP----LSLESIVAG 223

Query: 193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
            N+L  +PE + +L  L  +    N + ++P       SL    + +N L+ LP     L
Sbjct: 224 NNILEELPE-LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDNYLTDLPELPQSL 279

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLS---------------VLDLSNNSLSGLPPEIGKM 297
           + L   +   + L E       L  S                L++SNN L  LP    + 
Sbjct: 280 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR- 338

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR------SRLPENEDSEASTTKEDLITM 351
             L +L+ + N L  +     N      LK L          P+  +S         +  
Sbjct: 339 --LERLIASFNHLAEVPELPQN------LKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390

Query: 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP 397
              L    K+L +E   L   P        +  L ++   + +   
Sbjct: 391 VPELPQNLKQLHVETNPLREFPDIP---ESVEDLRMNSERVVDPYE 433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  147 bits (374), Expect = 4e-40
 Identities = 82/391 (20%), Positives = 135/391 (34%), Gaps = 69/391 (17%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKL-SELPAAIGELHM------------- 92
           LQ+ +   +N+ ++  +  N+   T    + ++     P   GE                
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQ 72

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL 152
              L+++   +  +P+       L     S N L ELP       +L     +   ++ L
Sbjct: 73  AHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 129

Query: 153 PE----------------DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL 196
           P                 +L + S +  +DV+ N L  L +        L  + A  N L
Sbjct: 130 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP----PSLEFIAAGNNQL 185

Query: 197 NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLG 256
             +PE + +L  L  +    N +  +P       SL     GNN L  LP EL  L  L 
Sbjct: 186 EELPE-LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELP-ELQNLPFLT 240

Query: 257 TLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS 316
           T+   +N LK        L    L++ +N L+ LP        L  L ++ N    L   
Sbjct: 241 TIYADNNLLKTLPDLPPSLE--ALNVRDNYLTDLPELPQS---LTFLDVSENIFSGLSEL 295

Query: 317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI 376
             N      L YL      NE          L  +   L    +EL++    L  +P+  
Sbjct: 296 PPN------LYYL--NASSNEIRS-------LCDLPPSL----EELNVSNNKLIELPALP 336

Query: 377 WEAGEITKLDLSRNSIQELPPELSSCASLQV 407
                + +L  S N + E+P    +   L V
Sbjct: 337 ---PRLERLIASFNHLAEVPELPQNLKQLHV 364

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (284), Expect = 1e-27
 Identities = 60/332 (18%), Positives = 112/332 (33%), Gaps = 57/332 (17%)

Query: 83  LPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSD 141
           +         L+      +++ ++P E  +  +  ++  + ++  +  P   G    ++ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 201
            +  +       E          L++    L+ L          L  L+AS N L  +PE
Sbjct: 63  SRLRDCLDRQAHE----------LELNNLGLSSLPELP----PHLESLVASCNSLTELPE 108

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
              SL  L+  + +   +  +P        L    + NN L  LP EL   S L  +D+ 
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP------LLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161

Query: 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
           +N LK+       L    +   NN L  L PE+  +  L  +    N L+ L    ++  
Sbjct: 162 NNSLKKLPDLPPSLE--FIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKKLPDLPLS-- 216

Query: 322 TPALLKYLR------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
               L+ +         LPE             +     L      +  +   L  +P  
Sbjct: 217 ----LESIVAGNNILEELPE-------------LQNLPFL----TTIYADNNLLKTLPDL 255

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQV 407
                 +  L++  N + +LP    S   L V
Sbjct: 256 P---PSLEALNVRDNYLTDLPELPQSLTFLDV 284

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 40/204 (19%)

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE------------ 267
           + I         L E    ++ L+ +P E   +          ++ +             
Sbjct: 1   MFINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 268 ---YCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA 324
                 +    +   L+L+N  LS LP        L  L+ + N L  L         P 
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTEL---------PE 108

Query: 325 LLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
           L + L+S  +  N     S     L           + L +    L  +P E+  +  + 
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPPLL-----------EYLGVSNNQLEKLP-ELQNSSFLK 156

Query: 384 KLDLSRNSIQELPPELSSCASLQV 407
            +D+  NS+++LP    S   +  
Sbjct: 157 IIDVDNNSLKKLPDLPPSLEFIAA 180

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 19/96 (19%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPL----------------LTVLNVSHNKLSELPAAIGEL 90
           L++L + +N + +  +   ++                  L  L+V  N L E P      
Sbjct: 359 LKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES- 417

Query: 91  HMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
             ++ L ++   ++   +     T  ++ D   +  
Sbjct: 418 --VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  152 bits (387), Expect = 4e-43
 Identities = 55/299 (18%), Positives = 117/299 (39%), Gaps = 24/299 (8%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 308
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G 
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  140 bits (354), Expect = 2e-38
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 15/260 (5%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKIP-DEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E    L     L     +NN +  L         +  L    N ++ +S 
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE 234
           +          +  + N +  + +   G  SR+  LDL  N I  ++     +   +L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE 293
             +  N +  +  ++   +KL TLDL SN+L     E      ++ + L NN L  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 294 IGKMTTLRKLLLTGNPLRTL 313
           +     L    L GN     
Sbjct: 233 LRFSQNLEHFDLRGNGFHCG 252

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (258), Expect = 6e-25
 Identities = 46/260 (17%), Positives = 95/260 (36%), Gaps = 22/260 (8%)

Query: 151 SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRL 209
           ++ E   + ++     V  + L     +L  S   + EL  S N L+ +    +   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
             L+L  N +      +    +L    + NN +  L         + TL   +N +    
Sbjct: 61  ELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVS 115

Query: 270 VEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
               Q     + L+NN ++ L   + G  + ++ L L  N + T+  + +   +  L ++
Sbjct: 116 CSRGQG-KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EH 173

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTS-KELSLEGMNLSAIPSEIWEAGEITKLDL 387
           L   L  N           +  +  ++     K L L    L+ +  E   A  +T + L
Sbjct: 174 LN--LQYNF----------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 388 SRNSIQELPPELSSCASLQV 407
             N +  +   L    +L+ 
Sbjct: 222 RNNKLVLIEKALRFSQNLEH 241

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  156 bits (396), Expect = 5e-43
 Identities = 61/389 (15%), Positives = 141/389 (36%), Gaps = 31/389 (7%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTV 72
             +++ SL+     + ++              ++++L L+ N + ++    L     L +
Sbjct: 15  EKVTDSSLKQALASLRQSA------------WNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS 132
           LN+S N L E    +  L  L++LD++ N +     E+    ++     ++N +  +  S
Sbjct: 63  LNLSSNVLYETL-DLESLSTLRTLDLNNNYV----QELLVGPSIETLHAANNNISRVSCS 117

Query: 133 LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELI 190
            G+     +   +NN IT L +      S++  LD++ N++  ++   L AS   L  L 
Sbjct: 118 RGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
              N +  +   +   ++L  LDL  N++  +         +    + NN L  +   L 
Sbjct: 176 LQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALR 234

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRL-SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
               L   DL  N      +     +   V  ++  ++  L  +  +  T+  L   G  
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGA- 293

Query: 310 LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
                    + P P   + +  +  E+       ++ + +          +E+       
Sbjct: 294 -----YCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY 348

Query: 370 SAIPSEIWEA-GEITKLDLSRNSIQELPP 397
             +  ++         L+  + ++ E   
Sbjct: 349 RTVIDQVTLRKQAKITLEQKKKALDEQVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  141 bits (358), Expect = 1e-37
 Identities = 62/363 (17%), Positives = 121/363 (33%), Gaps = 32/363 (8%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSIMKI-PDEIGSATALV 117
           + E  +N     +  V+ + L +  A++ +    +K LD+S N + +I   ++   T L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 118 KFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSN 177
             + SSN L E    L     L     +NN +  L         +  L    N ++ +S 
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC 116

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSS--ISGCCSLAE 234
           +          +  + N +  + +   G  SR+  LDL  N I ++  +   +   +L  
Sbjct: 117 SRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE 293
             +  N +  +  ++   +KL TLDL SN+L     E      ++ + L NN L  +   
Sbjct: 174 LNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA 232

Query: 294 IGKMTTLRKLLLTGNPLRTL----------------RSSLVNGPTPALLKYLRSRLPENE 337
           +     L    L GN                     + ++         +     L    
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 338 DSEASTTKEDLITMATRLSVTS-KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                            L       LS +G     +  E        ++D  +   + + 
Sbjct: 293 AYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVI 352

Query: 397 PEL 399
            ++
Sbjct: 353 DQV 355

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 99.2 bits (247), Expect = 1e-22
 Identities = 46/292 (15%), Positives = 85/292 (29%), Gaps = 44/292 (15%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L L +N I  +K  +     L  L++S NKL+ +         +  + +  N ++ I
Sbjct: 171 LEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI 229

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +  +  L  FD   N           C  L DF + N  + ++ +            
Sbjct: 230 EKALRFSQNLEHFDLRGNGFH--------CGTLRDFFSKNQRVQTVAK------------ 269

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
                +  L+       T+ T           +P       RLI L   ++ +LS     
Sbjct: 270 ---QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF--ADRLIALKRKEHALLSGQ--- 321

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSN 284
                        +    L  E    ++   +D    Q +    +          L+   
Sbjct: 322 ------------GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

Query: 285 NSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
            +L             L   L        L+ +        LL+ +  R  E
Sbjct: 370 KALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEE 421

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 97.6 bits (243), Expect = 3e-22
 Identities = 53/289 (18%), Positives = 97/289 (33%), Gaps = 56/289 (19%)

Query: 126 LKELPSSLGR--CLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           + E+  +  R     ++     ++ +             + +LD+ GN L+ +S   +A 
Sbjct: 2   IHEIKQNGNRYKIEKVT-----DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP 56

Query: 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 242
           +T L  L  S N+L    + + SLS L  LDL+ N +  +    S    +   +  NN +
Sbjct: 57  FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNI 111

Query: 243 SALPAELGKLSKLGTLDLHSNQLKE--YCVEACQLRLSVLDLSNNSLSGLPPE--IGKMT 298
           S +            + L +N++       E C+ R+  LDL  N +  +          
Sbjct: 112 SRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 299 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT 358
           TL  L L  N +  +           +   L                             
Sbjct: 170 TLEHLNLQYNFIYDV-------KGQVVFAKL----------------------------- 193

Query: 359 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQV 407
            K L L    L+ +  E   A  +T + L  N +  +   L    +L+ 
Sbjct: 194 -KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEH 241

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  146 bits (370), Expect = 6e-39
 Identities = 76/434 (17%), Positives = 135/434 (31%), Gaps = 85/434 (19%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLP 68
             S S N    ++     + +  +D+             +K  L   N  +    L+   
Sbjct: 10  NFSLSQNSFYNTISGTYADYFSAWDK------------WEKQALPGENRNEAVSLLKECL 57

Query: 69  L--LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
           +   + L ++   LS LP  +     +  L+++ N+++ +P+   S   L   D   N+L
Sbjct: 58  INQFSELQLNRLNLSSLPDNLPPQ--ITVLEITQNALISLPELPAS---LEYLDACDNRL 112

Query: 127 KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
             LP       +L      NN +T LPE                              +L
Sbjct: 113 STLPELPASLKHL---DVDNNQLTMLPELP---------------------------ALL 142

Query: 187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246
             + A  N L  +PE   SL  L    +  N++  +P       SL    +  N L +LP
Sbjct: 143 EYINADNNQLTMLPELPTSLEVL---SVRNNQLTFLPELPE---SLEALDVSTNLLESLP 196

Query: 247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
           A   +       ++                        N ++ +P  I  +     ++L 
Sbjct: 197 AVPVRNHHSEETEIF------------------FRCRENRITHIPENILSLDPTCTIILE 238

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL-- 364
            NPL +     ++  T     +         D + +T    L    T     +K+  +  
Sbjct: 239 DNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQ 298

Query: 365 ---------EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL-QVKFSDLVT 414
                         SA    + +          R  +     +LS+ A L Q  F+    
Sbjct: 299 IWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAAD 358

Query: 415 NKESCISGCYLYWN 428
             ESC     L WN
Sbjct: 359 ATESCEDRVALTWN 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  142 bits (359), Expect = 2e-38
 Identities = 63/307 (20%), Positives = 116/307 (37%), Gaps = 28/307 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +   N ++R +P  +  +F +            ++ L L    IE++          + 
Sbjct: 49  IVTFKNSTMRKLPAALLDSFRQ------------VELLNLNDLQIEEIDTYAFAYAHTIQ 96

Query: 72  VLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L +  N +  LP  +   + +L  L +  N +  +P  I  +   L     S+N L+ +
Sbjct: 97  KLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 156

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                +   +L + + S+N +T +   L     +   +V  N L+ L+         + E
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYNLLSTLAIP-----IAVEE 209

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           L AS N +N +         L  L L  N +      +     L E  +  N L  +   
Sbjct: 210 LDASHNSINVVRG--PVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYH 266

Query: 249 -LGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 306
              K+ +L  L + +N+L    +    +  L VLDLS+N L  +     +   L  L L 
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

Query: 307 GNPLRTL 313
            N + TL
Sbjct: 327 HNSIVTL 333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (342), Expect = 5e-36
 Identities = 62/363 (17%), Positives = 127/363 (34%), Gaps = 55/363 (15%)

Query: 47  LQKLILAHNNIEKLKEDL------RNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVS 99
               +    +I+   +D+        L    ++   ++ + +LPA  +     ++ L+++
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 100 FNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDL- 156
              I +I       A  + K     N ++ LP  + + +  L+      N ++SLP  + 
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 137

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
            +  K++ L +  N L  + ++   + T L  L  S N L  +   +  +  L   ++  
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSY 195

Query: 217 NRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR 276
           N + ++   I+    + E    +N+++ +   +    +L  L L  N L +         
Sbjct: 196 NLLSTLAIPIA----VEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPG 249

Query: 277 LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
           L  +DLS N L  +      KM  L +L ++ N L  L            +  L+     
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------IPTLK----- 298

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395
                                     L L   +L  +     +   +  L L  NSI  L
Sbjct: 299 -------------------------VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 333

Query: 396 PPE 398
              
Sbjct: 334 KLS 336

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  124 bits (312), Expect = 8e-32
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 24/277 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L L    L  +P  ++ N               L  L +++NN+E++++D  +    L 
Sbjct: 121 VLVLERNDLSSLPRGIFHN------------TPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +S N+L+ +   +  +  L   +VS+N +  +   I    A+ + D S N +  +  
Sbjct: 169 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRG 222

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            +   + L+  K  +N +T     L +   + ++D+  N+L  +  +       L  L  
Sbjct: 223 PV--NVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 279

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
           S N L  +      +  L  LDL  N +L +  +      L   Y+ +N++  L   L  
Sbjct: 280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LST 337

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L  L L  N      + A    ++   + +    
Sbjct: 338 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  140 bits (355), Expect = 4e-38
 Identities = 62/291 (21%), Positives = 128/291 (43%), Gaps = 30/291 (10%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--------------------- 85
           + KL++A   +  + + +  L  L  LN++ N+++++                       
Sbjct: 46  ITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS 104

Query: 86  AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS 145
           A+  L  L+ L ++ ++I  I   + + T +   +  +N      S L     L+    +
Sbjct: 105 ALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163

Query: 146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS 205
            + +  +   +A+ + +  L +  N++  +S   +AS T L    A  N +  +   + +
Sbjct: 164 ESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VAN 219

Query: 206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 265
           ++RL  L +  N+I  +   ++    L    +G N +S + A +  L+KL  L++ SNQ+
Sbjct: 220 MTRLNSLKIGNNKITDLS-PLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQI 277

Query: 266 KEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRS 315
            +  V     +L+ L L+NN L     E IG +T L  L L+ N +  +R 
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  137 bits (347), Expect = 5e-37
 Identities = 67/363 (18%), Positives = 140/363 (38%), Gaps = 31/363 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              L      I ++     +L       +    ++++     EL  +  L V+   +  I
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I   T L   + + NQ+ ++   L   + L++     N IT +   L + + + +L 
Sbjct: 60  QG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELY 116

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  + ++ +S   +A+ T +  L    N        + +++ L  L + ++++  +   I
Sbjct: 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-I 173

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +    L    +  N +  +   L  L+ L     + NQ+ +    A   RL+ L + NN 
Sbjct: 174 ANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTT 344
           ++ L P +  ++ L  L +  N +  +     L        LK L   +  N+ S+ S  
Sbjct: 233 ITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTK------LKMLN--VGSNQISDISV- 282

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPPELSSCA 403
               +   ++L      L L    L       I     +T L LS+N I ++ P L+S +
Sbjct: 283 ----LNNLSQL----NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLS 333

Query: 404 SLQ 406
            + 
Sbjct: 334 KMD 336

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  127 bits (322), Expect = 2e-33
 Identities = 61/243 (25%), Positives = 114/243 (46%), Gaps = 9/243 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L++L L  +NI  +   L NL  +  LN+  N      + +  +  L  L V+ + +  +
Sbjct: 112 LRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I + T L     + NQ++++ S L    +L  F A  N IT +   +A+ ++++ L 
Sbjct: 171 T-PIANLTDLYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLK 227

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  NK+T LS   +A+ + LT L    N ++ +   +  L++L  L++  N+I  I S +
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDI-SVL 283

Query: 227 SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +    L   ++ NN L     E +G L+ L TL L  N + +    A   ++   D +N 
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343

Query: 286 SLS 288
            + 
Sbjct: 344 VIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  121 bits (305), Expect = 4e-31
 Identities = 55/222 (24%), Positives = 106/222 (47%), Gaps = 9/222 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L L  N+       L N+  L  L V+ +K+ ++   I  L  L SL +++N I  I
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDI 192

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + S T+L  F    NQ+ ++   +     L+  K  NN IT L   LA+ S+++ L+
Sbjct: 193 S-PLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLE 249

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSS 225
           +  N+++ ++   +   T L  L    N ++ +   + +LS+L  L L+ N++ +     
Sbjct: 250 IGTNQISDINA--VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
           I G  +L   ++  N ++ +   L  LSK+ + D  +  +K+
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 30/199 (15%), Positives = 59/199 (29%), Gaps = 41/199 (20%)

Query: 209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEY 268
              L      I  I    +         +   +++ +     +L  +  L +   ++   
Sbjct: 2   AATLATLPAPINQI-FPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASI 59

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
                   L  L+L+ N ++ + P +  +  L  L +  N +  + S+L N      L  
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI-SALQN------LTN 111

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L                              +EL L   N+S I   +    ++  L+L 
Sbjct: 112 L------------------------------RELYLNEDNISDISP-LANLTKMYSLNLG 140

Query: 389 RNSIQELPPELSSCASLQV 407
            N        LS+   L  
Sbjct: 141 ANHNLSDLSPLSNMTGLNY 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  142 bits (360), Expect = 4e-37
 Identities = 83/412 (20%), Positives = 147/412 (35%), Gaps = 60/412 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLT 71
             + S+  L  VP+++  N               +  L L HN + +L   +      LT
Sbjct: 8   VADCSHLKLTQVPDDLPTN---------------ITVLNLTHNQLRRLPAANFTRYSQLT 52

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L+V  N +S+L P    +L MLK L++  N + ++                        
Sbjct: 53  SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS----------------------D 90

Query: 131 SSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
            +   C NL++    +N I  +  +       +  LD+  N L+            L EL
Sbjct: 91  KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150

Query: 190 IASKNLLNGMPE---TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL 245
           + S N +  +      I + S L +L+L  N+I    P        L   ++ N  L   
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 246 PAE----LGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNNSLSGLPPE-IGK 296
             E        + +  L L ++QL               L++LDLS N+L+ +  +    
Sbjct: 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW 270

Query: 297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA--TR 354
           +  L    L  N ++ L S  ++G        L+    +   S AS  K D  +      
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330

Query: 355 LSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCASL 405
           L    + L++E  ++  I S ++     +  L LS +          +  SL
Sbjct: 331 L----EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (351), Expect = 6e-36
 Identities = 81/409 (19%), Positives = 140/409 (34%), Gaps = 53/409 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +L+LSN  L    N  +                +L  L L++NN+  +  D    LP L 
Sbjct: 226 NLSLSNSQLSTTSNTTFLGLKW----------TNLTMLDLSYNNLNVVGNDSFAWLPQLE 275

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL- 129
              + +N +  L   ++  L  ++ L++  +                K   S   L ++ 
Sbjct: 276 YFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS--------------FTKQSISLASLPKID 321

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKL--TVLSNNLIASWTM- 185
             S      L      +N I  +  +       +  L +  +      L+N    S    
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 186 -LTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNNA 241
            L  L  +KN ++ +  +    L  L  LDL  N I          G  ++ E Y+  N 
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK 441

Query: 242 LSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPE-IG 295
              L       +  L  L L    LK              L++LDLSNN+++ +  + + 
Sbjct: 442 YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

Query: 296 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS----RLPENEDSEASTTKEDLITM 351
            +  L  L L  N L  L      G     LK L       L  N   E      ++   
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP---VEVFKD 558

Query: 352 ATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPEL 399
              L    K + L   NL+ +P+ ++     +  L+L +N I  +  ++
Sbjct: 559 LFEL----KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  136 bits (344), Expect = 6e-35
 Identities = 91/429 (21%), Positives = 164/429 (38%), Gaps = 57/429 (13%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            LNL++  LR +P   +  +              L  L +  N I KL+ +  + LP+L 
Sbjct: 29  VLNLTHNQLRRLPAANFTRY------------SQLTSLDVGFNTISKLEPELCQKLPMLK 76

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL 129
           VLN+ HN+LS+L          L  L +  NSI KI  +       L+  D S N L   
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 130 -PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL---DVEGNKLTVLSNNLIASWTM 185
              +  +  NL +   SNN I +L  +  D    S L   ++  N++   S     +   
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 186 LTELIASKNLLNG-MPETIG---SLSRLIRLDLHQNRILSI-PSSISGCC--SLAEFYMG 238
           L  L  +   L   + E +    + + +  L L  +++ +   ++  G    +L    + 
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 239 NNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNN-------- 285
            N L+ +       L +L    L  N ++   + +  L     +  L+L  +        
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQH--LFSHSLHGLFNVRYLNLKRSFTKQSISL 314

Query: 286 -SLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-RLPENEDSEAS 342
            SL  +       +  L  L +  N +  ++S++  G     L  L+   L  +  S  +
Sbjct: 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG-----LINLKYLSLSNSFTSLRT 369

Query: 343 TTKEDLITMA-TRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP--E 398
            T E  +++A + L      L+L    +S I S+ +   G +  LDL  N I +     E
Sbjct: 370 LTNETFVSLAHSPL----HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 399 LSSCASLQV 407
                ++  
Sbjct: 426 WRGLENIFE 434

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  121 bits (305), Expect = 8e-30
 Identities = 78/361 (21%), Positives = 131/361 (36%), Gaps = 56/361 (15%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
             V + SH KL+++P  +     +  L+++ N + ++P                      
Sbjct: 6   HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLP---------------------- 41

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
            ++  R   L+      N I+ L  +       +  L+++ N+L+ LS+   A  T LTE
Sbjct: 42  AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101

Query: 189 LIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP 246
           L    N +  +          LI LDL  N + S    +     +L E  + NN + AL 
Sbjct: 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161

Query: 247 AE---LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI----GKM 297
           +E   +   S L  L+L SNQ+KE+         RL  L L+N  L     E        
Sbjct: 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV 357
           T++R L L+ + L T  ++   G     L  L   L  N  +       D      +L  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML--DLSYNNLNVVG---NDSFAWLPQL-- 274

Query: 358 TSKELSLEGMNLSAIPSEIWE----------AGEITKLDLSRNSIQELPPE-LSSCASLQ 406
             +   LE  N+  + S                  TK  +S  S+ ++          L+
Sbjct: 275 --EYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 407 V 407
            
Sbjct: 333 H 333

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  114 bits (288), Expect = 1e-27
 Identities = 67/298 (22%), Positives = 107/298 (35%), Gaps = 40/298 (13%)

Query: 13  SLNLSN--RSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPL 69
            L+LSN   SLR + NE + +               L  L L  N I K++ D    L  
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAH----------SPLHILNLTKNKISKIESDAFSWLGH 406

Query: 70  LTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQL 126
           L VL++  N++ +         L  +  + +S+N  +++  +      +L +       L
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 127 KEL---PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           K +   PS      NL+    SNN I ++ +D L    K+  LD++ N L  L  +    
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH---- 522

Query: 183 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA 241
                          G    +  LS L  L+L  N    I          L    +G N 
Sbjct: 523 -----------ANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN 571

Query: 242 LSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL---RLSVLDLSNNSLSGLPPEIG 295
           L+ LPA        L +L+L  N +     +        L+ LD+  N        I 
Sbjct: 572 LNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIA 629

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (254), Expect = 3e-23
 Identities = 47/299 (15%), Positives = 95/299 (31%), Gaps = 51/299 (17%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL--KEDLRNLPLL 70
            LNL+   +  + ++ +                 L+ L L  N I +    ++ R L  +
Sbjct: 385 ILNLTKNKISKIESDAFSWLGH------------LEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 71  TVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSI---MKIPDEIGSATALVKFDCSSNQL 126
             + +S+NK  +L   +   +  L+ L +   ++      P        L   D S+N +
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 127 KELPSS-LGRCLNLSDFKASNNCITSLPED---------LADCSKMSKLDVEGNKLTVLS 176
             +    L     L      +N +  L +          L   S +  L++E N    + 
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 177 NNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
             +      L  +    N LN +      +   L  L+L +N I S+   + G       
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG------- 605

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI 294
                              L  LD+  N     C       ++ ++ ++ ++  L    
Sbjct: 606 --------------PAFRNLTELDMRFNPFDCTCESIAWF-VNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.8 bits (174), Expect = 3e-13
 Identities = 50/209 (23%), Positives = 84/209 (40%), Gaps = 23/209 (11%)

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLK 266
                D    ++  +P  +    ++    + +N L  L  A   + S+L +LD+  N + 
Sbjct: 5   SHEVADCSHLKLTQVPDDLPT--NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 267 EYCVEACQL--RLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
           +   E CQ    L VL+L +N LS L  +     T L +L L  N ++ ++++       
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK--- 119

Query: 324 ALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG-- 380
              K L +  L  N     S+TK         L    +EL L    + A+ SE  +    
Sbjct: 120 --QKNLITLDLSHN---GLSSTKLGTQVQLENL----QELLLSNNKIQALKSEELDIFAN 170

Query: 381 -EITKLDLSRNSIQELPPE-LSSCASLQV 407
             + KL+LS N I+E  P    +   L  
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFG 199

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 17/138 (12%)

Query: 273 CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS- 331
           C +   V D S+  L+ +P ++   T +  L LT N LR L ++            L S 
Sbjct: 2   CTVSHEVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTR-----YSQLTSL 54

Query: 332 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRN 390
            +  N     S  + +L      L    K L+L+   LS +  +       +T+L L  N
Sbjct: 55  DVGFNTI---SKLEPELCQKLPML----KVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107

Query: 391 SIQELPPE-LSSCASLQV 407
           SIQ++         +L  
Sbjct: 108 SIQKIKNNPFVKQKNLIT 125

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (348), Expect = 2e-36
 Identities = 73/276 (26%), Positives = 133/276 (48%), Gaps = 11/276 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           LQ+L    N +  L + L NL  L  L++S NK+S++   + +L  L+SL  + N I  I
Sbjct: 158 LQQLSF-GNQVTDL-KPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDI 214

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +G  T L +   + NQLK++ + L    NL+D   +NN I++L   L+  +K+++L 
Sbjct: 215 T-PLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELK 271

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +  N+++ +S   +A  T LT L  ++N L  +   I +L  L  L L+ N I  I S +
Sbjct: 272 LGANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDI-SPV 327

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           S    L   +  NN +S +   L  L+ +  L    NQ+ +    A   R++ L L++ +
Sbjct: 328 SSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
            +  P       ++   +          +++ +G +
Sbjct: 387 WTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGS 422

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  137 bits (347), Expect = 3e-36
 Identities = 77/372 (20%), Positives = 151/372 (40%), Gaps = 48/372 (12%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  +++ +N I  +   L NL  LT L + +N+++++   +  L  L  L++S N+I  I
Sbjct: 92  LVDILMNNNQIADI-TPLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDI 149

Query: 107 P--------------------DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASN 146
                                  + + T L + D SSN++ ++   L +  NL    A+N
Sbjct: 150 SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATN 208

Query: 147 NCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 206
           N I+ +   L   + + +L + GN+L  +    +AS T LT+L  + N ++ +   +  L
Sbjct: 209 NQISDITP-LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-LSGL 264

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           ++L  L L  N+I +I S ++G  +L    +  N L  +   +  L  L  L L+ N + 
Sbjct: 265 TKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNIS 322

Query: 267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPA 324
           +    +   +L  L   NN +S +   +  +T +  L    N +  L   ++L       
Sbjct: 323 DISPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANLTR----- 376

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
            +  L            +        +  + +V+              P+ I + G  T+
Sbjct: 377 -ITQL----------GLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 385 LDLSRNSIQELP 396
            D++ N      
Sbjct: 426 PDITWNLPSYTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  131 bits (332), Expect = 4e-34
 Identities = 88/388 (22%), Positives = 166/388 (42%), Gaps = 50/388 (12%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L      I+ + + +  L  LT +N S+N+L+++   +  L  L  + ++ N I  I
Sbjct: 48  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI 105

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP------------- 153
              + + T L      +NQ+ ++   L    NL+  + S+N I+ +              
Sbjct: 106 T-PLANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163

Query: 154 -------EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSL 206
                  + LA+ + + +LD+  NK++ +S   +A  T L  LIA+ N ++ +   +G L
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP-LGIL 220

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           + L  L L+ N++  I  +++   +L +  + NN +S L   L  L+KL  L L +NQ+ 
Sbjct: 221 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS 278

Query: 267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPA 324
                A    L+ L+L+ N L  + P I  +  L  L L  N +  +   SSL       
Sbjct: 279 NISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTK----- 332

Query: 325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
            L+ L      N+ S+ S+     +   T +      LS     +S +   +     IT+
Sbjct: 333 -LQRL--FFYNNKVSDVSS-----LANLTNI----NWLSAGHNQISDLT-PLANLTRITQ 379

Query: 385 LDLSRNSIQELPPELSSCASLQVKFSDL 412
           L L+  +    P    +  S+     ++
Sbjct: 380 LGLNDQAWTNAPVNYKANVSIPNTVKNV 407

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (304), Expect = 3e-30
 Identities = 76/360 (21%), Positives = 138/360 (38%), Gaps = 33/360 (9%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
            I     I ++      L       +    +++   +  +L  + +L      I  I   
Sbjct: 7   TITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIKSID-G 63

Query: 110 IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG 169
           +     L + + S+NQL ++   L     L D   +NN I  +   LA+ + ++ L +  
Sbjct: 64  VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN 121

Query: 170 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGC 229
           N++T +    + + T L  L  S N ++     +  L+ L +L    N++  +   ++  
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFG-NQVTDL-KPLANL 176

Query: 230 CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
            +L    + +N +S +   L KL+ L +L   +NQ+ +         L  L L+ N L  
Sbjct: 177 TTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 235

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTTKED 347
           +   +  +T L  L L  N +  L   S L        L  L  +L  N+      +   
Sbjct: 236 IGT-LASLTNLTDLDLANNQISNLAPLSGLTK------LTEL--KLGANQ-----ISNIS 281

Query: 348 LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQV 407
            +   T L      L L    L  I   I     +T L L  N+I ++ P +SS   LQ 
Sbjct: 282 PLAGLTAL----TNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 335

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 20/130 (15%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS 243
            + +  I     +N +  T  +L+  ++  L +  +     S +    +         + 
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTV-SQTDLDQVTTLQADRLGIK 59

Query: 244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL 303
           ++   +  L+ L  ++  +NQL +        +L  + ++NN ++ + P +  +T L  L
Sbjct: 60  SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117

Query: 304 LLTGNPLRTL 313
            L  N +  +
Sbjct: 118 TLFNNQITDI 127

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 1/85 (1%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L   HN I  L   L NL  +T L ++    +  P        + +   +    +  
Sbjct: 355 INWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIA 413

Query: 107 PDEIGSATALVKFDCSSNQLKELPS 131
           P  I    +  + D + N       
Sbjct: 414 PATISDGGSYTEPDITWNLPSYTNE 438

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  137 bits (347), Expect = 2e-35
 Identities = 70/441 (15%), Positives = 141/441 (31%), Gaps = 65/441 (14%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNL 67
             + + N  N  L ++P  +  +                + L  + N +  +       L
Sbjct: 12  EVNKTYNCENLGLNEIPGTLPNS---------------TECLEFSFNVLPTIQNTTFSRL 56

Query: 68  PLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             LT L+++  ++  +        H L +L ++ N ++ + +       AL         
Sbjct: 57  INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116

Query: 126 LKEL-PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASW 183
           +  +    L     L      +N I+S+         K+  LD + N +  LS   ++S 
Sbjct: 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176

Query: 184 TMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI------------------- 222
              T   L  + N + G+       +    L+    + L +                   
Sbjct: 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236

Query: 223 --------PSSISGCC--SLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
                   P+   G C  S+    +  +    + +      S L  LDL +  L E    
Sbjct: 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG 296

Query: 272 ACQL-RLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
              L  L  L LS N    L         +L  L + GN  R    +         L+ L
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN-LREL 355

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
              L  ++   +      L  + + L    + L+L      ++ +E ++   ++  LDL+
Sbjct: 356 --DLSHDDIETSDCCNLQLRNL-SHL----QSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 389 RNSIQELPPE--LSSCASLQV 407
              ++    +    +   L+V
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKV 429

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  132 bits (335), Expect = 6e-34
 Identities = 81/408 (19%), Positives = 139/408 (34%), Gaps = 49/408 (12%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLK--SLDVSFNS 102
           L+ L L  N+I  +K         L VL+  +N +  L    +  L      SL+++ N 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 103 IMKIPDEIGSATALVKFDCSSNQ-LKELPSSLGRC--LNLSDFKASNNCITSLPED-LAD 158
           I  I      +      +    Q L  +   L      +L      +     +       
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 159 CSKMS--KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
             +MS   ++++ +    +S+N    ++ L EL  +   L+ +P  +  LS L +L L  
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSA 310

Query: 217 NRILSIPS-SISGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEAC 273
           N+  ++   S S   SL    +  N          L  L  L  LDL  + ++       
Sbjct: 311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 274 QLR----LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--- 325
           QLR    L  L+LS N    L  E   +   L  L L    L+   +         L   
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 326 --------------------LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
                               L++L   L  N   + +  K + +    RL    + L L 
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHL--NLQGNHFPKGNIQKTNSLQTLGRL----EILVLS 484

Query: 366 GMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCASLQVKFSD 411
             +LS+I    +     +  +DLS N +     E LS    + +  + 
Sbjct: 485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS 532

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  128 bits (323), Expect = 2e-32
 Identities = 66/374 (17%), Positives = 121/374 (32%), Gaps = 33/374 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSI 103
              L L  N+I  ++    +  +   LN    +   +         +  L          
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240

Query: 104 MKIPDEI---GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC 159
             I   +       ++   +   +    + S+   C   L +   +   ++ LP  L   
Sbjct: 241 EDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL 300

Query: 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQN 217
           S + KL +  NK   L     +++  LT L    N          + +L  L  LDL  +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 218 RILSIPS---SISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEAC 273
            I +       +     L    +  N   +L  E   +  +L  LDL   +LK    ++ 
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 274 QLRLS---VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
              L    VL+LS++ L     ++   +  L+ L L GN          N      L+ L
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG-----NIQKTNSLQTL 475

Query: 330 RS----RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385
                  L   +    S+  +   T    +      + L    L++   E     +   L
Sbjct: 476 GRLEILVLSFCD---LSSIDQHAFTSLKMM----NHVDLSHNRLTSSSIEALSHLKGIYL 528

Query: 386 DLSRNSIQELPPEL 399
           +L+ N I  + P L
Sbjct: 529 NLASNHISIILPSL 542

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (314), Expect = 3e-31
 Identities = 54/292 (18%), Positives = 96/292 (32%), Gaps = 16/292 (5%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           ++ + L  +    +  +       L  L+++   LSELP+ +  L  LK L +S N    
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315

Query: 106 IPDE-IGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSLPED---LADC 159
           +      +  +L       N  +       L    NL +   S++ I +       L + 
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375

Query: 160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQN 217
           S +  L++  N+   L          L  L  +   L          +L  L  L+L  +
Sbjct: 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 218 RILSIP-SSISGCCSLAEFYMGNNALSAL----PAELGKLSKLGTLDLHSNQLKEYCVEA 272
            +         G  +L    +  N            L  L +L  L L    L      A
Sbjct: 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 273 --CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
                 ++ +DLS+N L+    E         L L  N +  +  SL+   +
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILS 547

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 94.7 bits (236), Expect = 5e-21
 Identities = 48/209 (22%), Positives = 76/209 (36%), Gaps = 12/209 (5%)

Query: 47  LQKLILAHNNIEKL---KEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
           L++L L+H++IE        LRNL  L  LN+S+N+   L   A  E   L+ LD++F  
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411

Query: 103 IMKIPDE--IGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPED---- 155
           +     +    +   L   + S + L      L   L  L       N            
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
           L    ++  L +    L+ +  +   S  M+  +  S N L        S  + I L+L 
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLA 531

Query: 216 QNRILSI-PSSISGCCSLAEFYMGNNALS 243
            N I  I PS +          +  N L 
Sbjct: 532 SNHISIILPSLLPILSQQRTINLRQNPLD 560

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  135 bits (341), Expect = 3e-35
 Identities = 67/323 (20%), Positives = 127/323 (39%), Gaps = 30/323 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           ++    +    VP  +                 + + L L  N I+ L +D   + P L 
Sbjct: 15  AVLCHRKRFVAVPEGI---------------PTETRLLDLGKNRIKTLNQDEFASFPHLE 59

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L ++ N +S +   A   L  L++L +  N +  IP  +    + L K D S N++  L
Sbjct: 60  ELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL 119

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              + + L NL   +  +N +  +     +  + + +L +E   LT +    ++    L 
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALSAL 245
            L      +N + + +   L RL  L++     L  +  +     +L    + +  L+A+
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEI-GKMTT 299
           P   +  L  L  L+L  N +    +E   L    RL  + L    L+ + P     +  
Sbjct: 240 PYLAVRHLVYLRFLNLSYNPIST--IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 300 LRKLLLTGNPLRTLRSSLVNGPT 322
           LR L ++GN L TL  S+ +   
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVG 320

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  121 bits (306), Expect = 2e-30
 Identities = 70/363 (19%), Positives = 138/363 (38%), Gaps = 52/363 (14%)

Query: 76  SHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKELPS-SL 133
              +   +P  I      + LD+  N I  +  +   S   L + + + N +  +   + 
Sbjct: 19  HRKRFVAVPEGIPTE--TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF 76

Query: 134 GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS 192
               NL      +N +  +P       S ++KLD+  NK+ +L + +      L  L   
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 193 KNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAE-L 249
            N L  +       L+ L +L L +  + SIP+ ++S    L    + +  ++A+     
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF 196

Query: 250 GKLSKLGTLDL-HSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLT 306
            +L +L  L++ H   L          L L+ L +++ +L+ +P   +  +  LR L L+
Sbjct: 197 KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256

Query: 307 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 366
            NP+ T+  S+++      L  L+                              E+ L G
Sbjct: 257 YNPISTIEGSMLHE-----LLRLQ------------------------------EIQLVG 281

Query: 367 MNLSAIPSEIWEA-GEITKLDLSRNSIQELPPEL-SSCASLQVKFSDLVTNKESCISGCY 424
             L+ +    +     +  L++S N +  L   +  S  +L+     L +N  +C   C 
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET--LILDSNPLAC--DCR 337

Query: 425 LYW 427
           L W
Sbjct: 338 LLW 340

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 9e-28
 Identities = 51/261 (19%), Positives = 95/261 (36%), Gaps = 20/261 (7%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
           +L L +  L+ +P  V+                 L KL ++ N I  L + + ++L  L 
Sbjct: 84  TLGLRSNRLKLIPLGVFTGLSN------------LTKLDISENKIVILLDYMFQDLYNLK 131

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
            L V  N L  +   A   L+ L+ L +   ++  IP E       L+        +  +
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 130 PS-SLGRCLNLSDFK-ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
              S  R   L   + +    + ++  +      ++ L +    LT +    +     L 
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
            L  S N ++ +  ++   L RL  + L   ++  +      G   L    +  N L+ L
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311

Query: 246 PAEL-GKLSKLGTLDLHSNQL 265
              +   +  L TL L SN L
Sbjct: 312 EESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (275), Expect = 2e-26
 Identities = 58/326 (17%), Positives = 114/326 (34%), Gaps = 51/326 (15%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL 152
           +++       + +P+ I + T     D   N++K L         +L + + + N ++++
Sbjct: 14  RAVLCHRKRFVAVPEGIPTET--RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 153 PED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLI 210
                 +   +  L +  N+L ++   +    + LT+L  S+N +  + + +   L  L 
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK 131

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEY 268
            L++  N ++ I     SG  SL +  +    L+++P E L  L  L  L L    +   
Sbjct: 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI--N 189

Query: 269 CVEACQL----RLSVLDLS-NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
            +         RL VL++S    L  + P       L  L +T   L  +    V     
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246

Query: 324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEI 382
             L YLR                               L+L    +S I   +      +
Sbjct: 247 --LVYLR------------------------------FLNLSYNPISTIEGSMLHELLRL 274

Query: 383 TKLDLSRNSIQELPPE-LSSCASLQV 407
            ++ L    +  + P        L+V
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRV 300

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  128 bits (324), Expect = 5e-34
 Identities = 52/263 (19%), Positives = 110/263 (41%), Gaps = 21/263 (7%)

Query: 63  DLRNLPLLTVLNVSHNKLS---ELPAAIGELHMLKSLDVS-FNSIM-KIPDEIGSATALV 117
                  +  L++S   L     +P+++  L  L  L +   N+++  IP  I   T L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 118 KFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDVEGNKLT-V 174
               +   +   +P  L +   L     S N ++ +LP  ++    +  +  +GN+++  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 175 LSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSL 232
           + ++  +   + T +  S+N L G +P T  +L+ L  +DL +N +            + 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 233 AEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQL-----KEYCVEACQLRLSVLDLSNNS 286
            + ++  N+L+  L  ++G    L  LDL +N++     +   +   +  L  L++S N+
Sbjct: 224 QKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKF-LHSLNVSFNN 279

Query: 287 LSGLPPEIGKMTTLRKLLLTGNP 309
           L G  P+ G +          N 
Sbjct: 280 LCGEIPQGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  108 bits (273), Expect = 7e-27
 Identities = 70/344 (20%), Positives = 121/344 (35%), Gaps = 78/344 (22%)

Query: 104 MKIPDEIGSATALV----KFDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT---SLPED 155
           ++I  ++G+ T L       DC +      L  +  +   +++   S   +     +P  
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS 71

Query: 156 LADCSKMSKLDVEGNKLTVLSNNL-------IASWTMLTELIASKNLLNG-MPETIGSLS 207
           LA+   ++ L + G       NNL       IA  T L  L  +   ++G +P+ +  + 
Sbjct: 72  LANLPYLNFLYIGGI------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 208 RLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGT-LDLHSNQ 264
            L+ LD   N +  ++P SIS   +L       N +S A+P   G  SKL T + +  N+
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 265 L-----KEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           L       +      L L+ +DLS N L G      G     +K+ L  N L        
Sbjct: 186 LTGKIPPTFA----NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL-------- 233

Query: 319 NGPTPAL--LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSE 375
                 +   K L                                L L    +   +P  
Sbjct: 234 AFDLGKVGLSKNL------------------------------NGLDLRNNRIYGTLPQG 263

Query: 376 IWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESC 419
           + +   +  L++S N++    P+  +     V  S    NK  C
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDV--SAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  106 bits (268), Expect = 3e-26
 Identities = 50/269 (18%), Positives = 101/269 (37%), Gaps = 42/269 (15%)

Query: 59  KLKEDLRNLPLL----TVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSI---MKIPDEI 110
           ++K+DL N   L       +  +      L     + + + +LD+S  ++     IP  +
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 111 GSATALVKFDCSS-NQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSKLDV 167
            +   L        N L   +P ++ +   L     ++  ++ ++P+ L+    +  LD 
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132

Query: 168 EGNKLT--VLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIR-LDLHQNRIL-SI 222
             N L+  +  +  I+S   L  +    N ++G +P++ GS S+L   + + +NR+   I
Sbjct: 133 SYNALSGTLPPS--ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 223 PSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 281
           P +     +LA   +  N L        G                             + 
Sbjct: 191 PPTF-ANLNLAFVDLSRNMLEGDASVLFGSDKNT----------------------QKIH 227

Query: 282 LSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           L+ NSL+    ++G    L  L L  N +
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 89.5 bits (223), Expect = 3e-20
 Identities = 53/296 (17%), Positives = 89/296 (30%), Gaps = 72/296 (24%)

Query: 126 LKELPSSLGRCLNLSDFKASNNCITS-----LPEDLADCSKMSKLDVEGNKL--TVLSNN 178
           L ++   LG    LS +  + +C        L +      +++ LD+ G  L       +
Sbjct: 11  LLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS 70

Query: 179 LIASWTMLTEL-IASKNLLNGM-PETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEF 235
            +A+   L  L I   N L G  P  I  L++L  L +    +  +IP  +S   +L   
Sbjct: 71  SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

Query: 236 YMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPE 293
               NALS  LP  +  L  L                        +    N +SG +P  
Sbjct: 131 DFSYNALSGTLPPSISSLPNL----------------------VGITFDGNRISGAIPDS 168

Query: 294 IGKMTTL-RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 352
            G  + L   + ++ N L         G  P     L                       
Sbjct: 169 YGSFSKLFTSMTISRNRL--------TGKIPPTFANL----------------------- 197

Query: 353 TRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQV 407
                    + L    L               K+ L++NS+     ++    +L  
Sbjct: 198 -----NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  130 bits (329), Expect = 4e-33
 Identities = 68/425 (16%), Positives = 134/425 (31%), Gaps = 60/425 (14%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +    ++ L  VP+++  +                + + L+ N ++ L      N  
Sbjct: 12  PNITYQCMDQKLSKVPDDIPSS---------------TKNIDLSFNPLKILKSYSFSNFS 56

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQL 126
            L  L++S  ++  +   A   LH L +L ++ N I           T+L        +L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 127 KELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L S  +G+ + L     ++N I S  LP   ++ + +  +D+  N +  ++ N +   
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAE--- 234
                    L  S N ++ + +      +L  L L  N   S  + + +     L     
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 235 ---FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLDLSNNS 286
               +     L       +  L  +   +       ++  +     C   +S + L+  S
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           +  L   + K    + L +    L+   +  L        LK L   + +   S      
Sbjct: 297 IKYLED-VPKHFKWQSLSIIRCQLKQFPTLDLPF------LKSLTLTMNKGSISFKKVAL 349

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK---LDLSRNSIQELPPELSSC 402
             L             L L    LS      +          LDLS N    +       
Sbjct: 350 PSL-----------SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 403 ASLQV 407
             LQ 
Sbjct: 399 EELQH 403

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  119 bits (301), Expect = 2e-29
 Identities = 55/285 (19%), Positives = 98/285 (34%), Gaps = 33/285 (11%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           ++  + LA  +I+ L ED+        L++   +L + P    +L  LKSL ++ N    
Sbjct: 286 NVSAMSLAGVSIKYL-EDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSI 342

Query: 106 IPDEIGSATALVKFDCSSNQLKELPS---SLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
              ++    +L   D S N L        S     +L     S N    +  +     ++
Sbjct: 343 SFKKVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401

Query: 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL 220
             LD + + L  ++  +   S   L  L  S              L+ L  L +  N   
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461

Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLS 278
                                   L       + L  LDL   QL++          RL 
Sbjct: 462 DNT---------------------LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 279 VLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +L++S+N+L  L      ++ +L  L  + N + T +  L + P 
Sbjct: 501 LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPK 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  119 bits (300), Expect = 3e-29
 Identities = 73/425 (17%), Positives = 131/425 (30%), Gaps = 62/425 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +++LS   L+ + +  + NF             +LQ L L+   IE +++     L  L+
Sbjct: 36  NIDLSFNPLKILKSYSFSNF------------SELQWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE- 128
            L ++ N +      +   L  L++L      +  +    IG    L K + + N +   
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 129 -LPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMS----KLDVEGNKLTVLSNNLIAS 182
            LP+      NL     S N I ++   DL    +       LD+  N +  + +     
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 183 WTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSI-------PSSISGCCSLA 233
              L EL    N  +   M   + +L+ L    L               PS + G C + 
Sbjct: 204 IK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 234 EFYM---GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
                    N  S    +   L+ +  + L    +K         +   L +    L   
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 291 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR------SRLPENEDSEASTT 344
           P     +  L+ L LT N        +        L YL       S       S+  T 
Sbjct: 323 PT--LDLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSC 402
                          + L L       + +      E+  LD   ++++ +       S 
Sbjct: 377 S-------------LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 403 ASLQV 407
             L  
Sbjct: 424 EKLLY 428

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (285), Expect = 2e-27
 Identities = 70/384 (18%), Positives = 114/384 (29%), Gaps = 40/384 (10%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSIM 104
              L ++ N I+ +++       L  L +  N  S   +   +  L  L    +      
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 105 KIPD---------EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPE 154
              +         E      + +F  +                N+S    +   I  L  
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE- 301

Query: 155 DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDL 214
           D+    K   L +   +L             L  L  + N  +       +L  L  LDL
Sbjct: 302 DVPKHFKWQSLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGSI-SFKKVALPSLSYLDL 357

Query: 215 HQNRILSIPS---SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE--YC 269
            +N +        S  G  SL    +  N    + A    L +L  LD   + LK     
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF 417

Query: 270 VEACQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
                L  L  LD+S  +       I   +T+L  L + GN  +    S V   T  L  
Sbjct: 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTF 477

Query: 328 -YLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITK 384
             L   +L              +     RL    + L++   NL  + S  +     ++ 
Sbjct: 478 LDLSKCQL--------EQISWGVFDTLHRL----QLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 385 LDLSRNSIQELPPE-LSSCASLQV 407
           LD S N I+           SL  
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAF 549

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.4 bits (243), Expect = 5e-22
 Identities = 44/207 (21%), Positives = 76/207 (36%), Gaps = 10/207 (4%)

Query: 47  LQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           L  L L+ N +               L  L++S N    + A    L  L+ LD   +++
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTL 411

Query: 104 MKIPDE--IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPED--LAD 158
            ++ +     S   L+  D S    K           +L+  K + N           A+
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQN 217
            + ++ LD+   +L  +S  +  +   L  L  S N L  +       L  L  LD   N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531

Query: 218 RILSIPSSI-SGCCSLAEFYMGNNALS 243
           RI +    +     SLA F + NN+++
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSVA 558

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  130 bits (327), Expect = 6e-33
 Identities = 62/363 (17%), Positives = 127/363 (34%), Gaps = 55/363 (15%)

Query: 47  LQKLILAHNNIEKLKEDL------RNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVS 99
               +    +I+   +D+        L    ++   ++ + +LPA  +     ++ L+++
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 83

Query: 100 FNSIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDL- 156
              I +I       A  + K     N ++ LP  + + +  L+      N ++SLP  + 
Sbjct: 84  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF 143

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQ 216
            +  K++ L +  N L  + ++   + T L  L  S N L  +   +  +  L   ++  
Sbjct: 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSY 201

Query: 217 NRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR 276
           N + ++   I+    + E    +N+++ +   +    +L  L L  N L +         
Sbjct: 202 NLLSTLAIPIA----VEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPG 255

Query: 277 LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
           L  +DLS N L  +      KM  L +L ++ N L  L            +  L+     
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQP------IPTLK----- 304

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL 395
                                     L L   +L  +     +   +  L L  NSI  L
Sbjct: 305 -------------------------VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL 339

Query: 396 PPE 398
              
Sbjct: 340 KLS 342

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (305), Expect = 5e-30
 Identities = 54/277 (19%), Positives = 107/277 (38%), Gaps = 24/277 (8%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L L    L  +P  ++ N               L  L +++NN+E++++D  +    L 
Sbjct: 127 VLVLERNDLSSLPRGIFHN------------TPKLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            L +S N+L+ +   +  +  L   +VS+N +  +   I    A+ + D S N +  +  
Sbjct: 175 NLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPI----AVEELDASHNSINVVRG 228

Query: 132 SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA 191
            +   + L+  K  +N +T     L +   + ++D+  N+L  +  +       L  L  
Sbjct: 229 PV--NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 251
           S N L  +      +  L  LDL  N +L +  +      L   Y+ +N++  L   L  
Sbjct: 286 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LST 343

Query: 252 LSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L  L L  N      + A    ++   + +    
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 380

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  127 bits (322), Expect = 8e-33
 Identities = 72/362 (19%), Positives = 135/362 (37%), Gaps = 39/362 (10%)

Query: 47  LQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
               + A   ++         L  LT L+  ++ ++++   I +L  L  L  + N+I  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT 78

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   +   T L    C SN+L  L   +     L+      N +T L   ++    ++ L
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +   N LT +    ++  T LTEL    N      + +   ++L  LD   N+I  +   
Sbjct: 133 NCARNTLTEID---VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-- 186

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           +S    L       N ++ L   L +  +L  LD  SN+L E  V     +L+  D S N
Sbjct: 187 VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLT-QLTYFDCSVN 243

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
            L+ L   +  ++ L  L      L  +  +               +L   +       K
Sbjct: 244 PLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNT------------QLIYFQAEGCRKIK 289

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           E  +T  T+L      L  +   ++ +   + +  ++  L L+   + EL   +S    L
Sbjct: 290 ELDVTHNTQL----YLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKL 341

Query: 406 QV 407
           + 
Sbjct: 342 KS 343

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (252), Expect = 2e-23
 Identities = 52/254 (20%), Positives = 90/254 (35%), Gaps = 21/254 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L +L    NNI KL  DL     LT L+ S NKL+E+   +  L  L   D S N + ++
Sbjct: 193 LNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL 248

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              + + + L    C    L E+   L     L  F+A          D+   +++  LD
Sbjct: 249 D--VSTLSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKEL-DVTHNTQLYLLD 303

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            +   +T L    ++    L  L  +   L  +   +   ++L  L      I     S+
Sbjct: 304 CQAAGITELD---LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFS-SV 357

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKL------GTLDLHSNQLKEYCVEACQLRLSVL 280
               +L   +        +P E    + L        LD   N +     +      +  
Sbjct: 358 GKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATN 417

Query: 281 DLSNNSLSGLPPEI 294
            ++  +LS   P +
Sbjct: 418 TITWENLSTDNPAV 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (315), Expect = 3e-31
 Identities = 56/277 (20%), Positives = 92/277 (33%), Gaps = 16/277 (5%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           ++    L    IE++ +D         L + + K  + P    +L  LK L  + N    
Sbjct: 283 NVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339

Query: 106 IPDEIGSATALVKFDCSSNQLKEL---PSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
              E+    +L   D S N L        S     +L     S N + ++  +     ++
Sbjct: 340 AFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL 220
             LD + + L  +S  ++  S   L  L  S              LS L  L +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 221 S--IPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK--EYCVEACQL 275
              +P   +   +L    +    L  L       LS L  L++  N     +     C  
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 518

Query: 276 RLSVLDLSNNSLSGLPPEI--GKMTTLRKLLLTGNPL 310
            L VLD S N +     +      ++L  L LT N  
Sbjct: 519 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  124 bits (314), Expect = 3e-31
 Identities = 67/422 (15%), Positives = 130/422 (30%), Gaps = 53/422 (12%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLP 68
            + +      +   +P+ +  +                + L L+ N +  L      + P
Sbjct: 8   PNITYQCMELNFYKIPDNLPFS---------------TKNLDLSFNPLRHLGSYSFFSFP 52

Query: 69  LLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQL 126
            L VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 127 KEL-PSSLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
             L    +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +   
Sbjct: 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 184 TMLT----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYM 237
             +      L  S N +N +        RL +L L  N      + + I G   L    +
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 238 GNNALSALPA----ELGKLSKLGTLDLHSNQLKEYCVEACQL--------RLSVLDLSNN 285
                         +   L  L  L +   +L         +         +S   L + 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
           ++  +          + L L               PT  L    R     N+   A +  
Sbjct: 293 TIERVKD-FSYNFGWQHLELVNCKFGQF-------PTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 346 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           +  +     L ++   LS +G          +    +  LDLS N +  +         L
Sbjct: 345 D--LPSLEFLDLSRNGLSFKGC----CSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 406 QV 407
           + 
Sbjct: 399 EH 400

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (296), Expect = 8e-29
 Identities = 79/420 (18%), Positives = 146/420 (34%), Gaps = 51/420 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
           +L+LS   LR + +  + +F             +LQ L L+   I+ +++   ++L  L+
Sbjct: 32  NLDLSFNPLRHLGSYSFFSF------------PELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDCSSNQLK-- 127
            L ++ N +  L   A   L  L+ L     ++       IG    L + + + N ++  
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 128 ELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMS----KLDVEGNKLTVLSNNLIAS 182
           +LP       NL     S+N I S+   DL    +M      LD+  N +  +       
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 183 WTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRILSIPS----SISGCCSLAEFY 236
              L +L    N  +   M   I  L+ L    L      +  +      S    L    
Sbjct: 200 IR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 237 MGNNALSAL-------PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG 289
           +    L+ L             L+ + +  L S  ++     +       L+L N     
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318

Query: 290 LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
            P     + +L++L  T N       S V+ P+   L++L   L  N  S      +   
Sbjct: 319 FPTLK--LKSLKRLTFTSNKGGNA-FSEVDLPS---LEFL--DLSRNGLSFKGCCSQSDF 370

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQV 407
              T L    K L L    +  + S      ++  LD   ++++++       S  +L  
Sbjct: 371 GT-TSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (285), Expect = 3e-27
 Identities = 76/408 (18%), Positives = 132/408 (32%), Gaps = 58/408 (14%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSI 103
           LQKL+    N+  L+   + +L  L  LNV+HN +   +LP     L  L+ LD+S N I
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 104 MKI-PDEIGSATAL----VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCIT--SLPEDL 156
             I   ++     +    +  D S N +  +     + + L      NN  +   +   +
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 157 ADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLL-------NGMPETIGSL 206
              + +    +   +     N      ++   L  L   +  L       + + +    L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE------------------ 248
           + +    L    I  +    S         + N      P                    
Sbjct: 282 TNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340

Query: 249 --LGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRK 302
                L  L  LDL  N L      +        L  LDLS N +  +      +  L  
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400

Query: 303 LLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362
           L    + L+ +    V       L YL   +              +    + L    + L
Sbjct: 401 LDFQHSNLKQMSEFSVFLSLRN-LIYL--DISHTHT---RVAFNGIFNGLSSL----EVL 450

Query: 363 SLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQV 407
            + G +     +P    E   +T LDLS+  +++L P   +S +SLQV
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  111 bits (280), Expect = 1e-26
 Identities = 66/383 (17%), Positives = 111/383 (28%), Gaps = 61/383 (15%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAAIGELHMLKSLDVSFNSIM 104
              L L+ N +  ++        L  L + +N  S   +   I  L  L+   +      
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

Query: 105 KIPD----EIGSATALVKFDCSSNQLKEL-------PSSLGRCLNLSDFKASNNCITSLP 153
              +    +  +   L        +L  L               N+S F   +  I  + 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 154 EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLD 213
            D +       L++   K        + S   LT      +   G   +   L  L  LD
Sbjct: 299 -DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT----SNKGGNAFSEVDLPSLEFLD 353

Query: 214 LHQNRIL---SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE--Y 268
           L +N +        S  G  SL    +  N +  + +    L +L  LD   + LK+   
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 269 CVEACQLR-LSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
                 LR L  LD+S+             +++L  L + GN                  
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF---------------- 457

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKL 385
                               D+ T    L+     L L    L  + P+       +  L
Sbjct: 458 --------------QENFLPDIFTELRNLTF----LDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 386 DLSRNSIQELPPE-LSSCASLQV 407
           ++S N+   L         SLQV
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQV 522

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  109 bits (274), Expect = 6e-26
 Identities = 67/344 (19%), Positives = 113/344 (32%), Gaps = 21/344 (6%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL 152
            +      +  KIPD +  +      D S N L+ L   S      L     S   I ++
Sbjct: 10  ITYQCMELNFYKIPDNLPFS--TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 153 -PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLI 210
                   S +S L + GN +  L+    +  + L +L+A +  L  +    IG L  L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 211 RLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLG----TLDLHSN 263
            L++  N I    +P   S   +L    + +N + ++   +L  L ++     +LDL  N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 264 QLKEYCVEACQ-LRLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
            +      A + +RL  L L NN  S   +   I  +  L    L     R      +  
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--EGNLEK 245

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG 380
              + L+ L +   E           D I             SL  + +  +    +  G
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 381 EITKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESCISGC 423
               L+L      + P   L S   L   F+             
Sbjct: 306 -WQHLELVNCKFGQFPTLKLKSLKRLT--FTSNKGGNAFSEVDL 346

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 96.6 bits (241), Expect = 9e-22
 Identities = 41/208 (19%), Positives = 74/208 (35%), Gaps = 11/208 (5%)

Query: 47  LQKLILAHNNIEKL---KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           L+ L L+ N +       +       L  L++S N +  + +    L  L+ LD   +++
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408

Query: 104 MKIPDE--IGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITS--LPEDLAD 158
            ++ +     S   L+  D S    +           +L   K + N      LP+   +
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQN 217
              ++ LD+   +L  LS     S + L  L  S N    +       L+ L  LD   N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 218 RILSIPSSISGCC--SLAEFYMGNNALS 243
            I++           SLA   +  N  +
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  118 bits (299), Expect = 2e-30
 Identities = 69/291 (23%), Positives = 127/291 (43%), Gaps = 35/291 (12%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L+ VP E+               + D   L L +N+I +L++D  + L  L 
Sbjct: 37  VVQCSDLGLKAVPKEI---------------SPDTTLLDLQNNDISELRKDDFKGLQHLY 81

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N +++IP      ++LV+     N+++++P
Sbjct: 82  ALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVP 139

Query: 131 -SSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                   N++  +   N + +        D  K++ L +   KLT +  +L  +   L 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LN 196

Query: 188 ELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSAL 245
           EL    N +  +    +   S+L RL L  N+I  I +   S   +L E ++ NN LS +
Sbjct: 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256

Query: 246 PAELGKLSKLGTLDLHSNQLKE--------YCVEACQLRLSVLDLSNNSLS 288
           PA L  L  L  + LH+N + +              +   + + L NN + 
Sbjct: 257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (255), Expect = 2e-24
 Identities = 66/301 (21%), Positives = 112/301 (37%), Gaps = 51/301 (16%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            CS   LK +P  +      L+L      NN I+ L +D       +  L +  NK++ +
Sbjct: 39  QCSDLGLKAVPKEISPDTTLLDLQ-----NNDISELRKDDFKGLQHLYALVLVNNKISKI 93

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
                +    L +L  SKN L  +P      S L+ L +H NRI  +P  + SG  ++  
Sbjct: 94  HEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151

Query: 235 FYMGNNALSALPAELGKLS--KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
             MG N L     E G     KL  L +   +L     +  +  L+ L L +N +  +  
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE-TLNELHLDHNKIQAIEL 210

Query: 293 EI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM 351
           E   + + L +L L  N +R + +  ++      L  LR                     
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSF-----LPTLR--------------------- 244

Query: 352 ATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSD 411
                    EL L+   LS +P+ + +   +  + L  N+I ++           VK + 
Sbjct: 245 ---------ELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295

Query: 412 L 412
            
Sbjct: 296 Y 296

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  101 bits (254), Expect = 3e-24
 Identities = 54/272 (19%), Positives = 105/272 (38%), Gaps = 17/272 (6%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKE 128
           L V+  S   L  +P  I        LD+  N I ++  D+      L      +N++ +
Sbjct: 35  LRVVQCSDLGLKAVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 129 LPS-SLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           +   +      L     S N +  +P +L   S + +L +  N++  +   + +    + 
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMN 150

Query: 188 ELIASKNLLNGMPETIGSLS--RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
            +    N L       G+    +L  L + + ++  IP  +    +L E ++ +N + A+
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAI 208

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
             E L + SKL  L L  NQ++     +      L  L L NN LS +P  +  +  L+ 
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQV 268

Query: 303 LLLTGNPLRTLR----SSLVNGPTPALLKYLR 330
           + L  N +  +       +  G   A    + 
Sbjct: 269 VYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  100 bits (250), Expect = 1e-23
 Identities = 46/247 (18%), Positives = 93/247 (37%), Gaps = 28/247 (11%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI-- 103
           LQKL ++ N++ ++  +L     L  L +  N++ ++P      L  +  +++  N +  
Sbjct: 104 LQKLYISKNHLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN 161

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKM 162
                       L     S  +L  +P  L     L++    +N I ++   DL   SK+
Sbjct: 162 SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI 222
            +L +  N++ ++ N  ++    L EL    N L+ +P  +  L  L  + LH N I  +
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE----ACQLRLS 278
                            N    +   + K +    + L +N +  + V+     C     
Sbjct: 280 G---------------VNDFCPVGFGV-KRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323

Query: 279 VLDLSNN 285
            +   N 
Sbjct: 324 AIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 43/204 (21%), Positives = 72/204 (35%), Gaps = 34/204 (16%)

Query: 227 SGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL----RLSVLD 281
            GC C L      +  L A+P E+        LDL +N + E  +          L  L 
Sbjct: 29  FGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISE--LRKDDFKGLQHLYALV 84

Query: 282 LSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR------SRLP 334
           L NN +S +  +    +  L+KL ++ N L  +  +L     P+ L  LR       ++P
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVP 139

Query: 335 EN--EDSEASTT--------KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITK 384
           +                   +           +    L +    L+ IP ++ E   + +
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET--LNE 197

Query: 385 LDLSRNSIQELPPE-LSSCASLQV 407
           L L  N IQ +  E L   + L  
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYR 221

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  120 bits (302), Expect = 9e-30
 Identities = 65/435 (14%), Positives = 142/435 (32%), Gaps = 65/435 (14%)

Query: 11  SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPL 69
           SG  +  +RS   +P+ +                  ++ L L+ N I  +   DLR    
Sbjct: 7   SGVCDGRSRSFTSIPSGLTAA---------------MKSLDLSFNKITYIGHGDLRACAN 51

Query: 70  LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLK 127
           L VL +  ++++ +   A   L  L+ LD+S N +  +     G  ++L   +   N  +
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 128 ELPSSLG-------RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNL 179
            L  +         + L + +        + +   D A  + +++L+++   L    +  
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGN----VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167

Query: 180 IASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSSISG---------- 228
           + S   +  L    +    + E     LS +  L+L    +     S             
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227

Query: 229 ------------CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR 276
                          L +       LS +  +   L+ LG  +   + +     +   + 
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 277 LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 335
           +  L +    L      +   +  ++++ +  + +  +  S         L++L   L E
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKS--LEFL--DLSE 343

Query: 336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW---EAGEITKLDLSRNSI 392
           N   E              L    + L L   +L ++            +T LD+SRN+ 
Sbjct: 344 NLMVEEYLKNSACKGAWPSL----QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399

Query: 393 QELPPELSSCASLQV 407
             +P        ++ 
Sbjct: 400 HPMPDSCQWPEKMRF 414

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  116 bits (293), Expect = 1e-28
 Identities = 70/442 (15%), Positives = 139/442 (31%), Gaps = 67/442 (15%)

Query: 14  LNLSNRSLRDVPNEVYKN-------------FDEAGEGDKWWEAVDLQKLILAHNNI--E 58
           L+LS+  L  + +  +               +   G    +    +LQ L + +     E
Sbjct: 79  LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138

Query: 59  KLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSA-TAL 116
             + D   L  L  L +    L    + ++  +  +  L +  +    + +      +++
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 117 VKFDCSSNQLKELPSSLGRCL------------NLSDFKASNNCITSLPEDLADCSKMSK 164
              +     L     S                        S N +  L   + + S++  
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 165 LDVEGNKLTVLSNNLIASWTMLTEL---------IASKNLLNGMPETIGSLSRLIRLDLH 215
            D   N L   + +     + L ++         I    L   +      L ++ R+ + 
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 216 QNRILSIPSSI-SGCCSLAEFYMGNNALSAL----PAELGKLSKLGTLDLHSNQLKEYCV 270
            +++  +P S      SL    +  N +        A  G    L TL L  N L+    
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 271 EACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
               L     L+ LD+S N+   +P        +R L L+   +R +++ +     P  L
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI-----PQTL 433

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 386
           + L   +  N     S     L           +EL +    L  +P        +  + 
Sbjct: 434 EVL--DVSNNNLDSFSLFLPRL-----------QELYISRNKLKTLPDA-SLFPVLLVMK 479

Query: 387 LSRNSIQELPPE-LSSCASLQV 407
           +SRN ++ +P        SLQ 
Sbjct: 480 ISRNQLKSVPDGIFDRLTSLQK 501

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  107 bits (268), Expect = 3e-25
 Identities = 57/316 (18%), Positives = 115/316 (36%), Gaps = 24/316 (7%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            L L + +L           DE     K            + N + KL   +  L  +  
Sbjct: 200 YLELRDTNLARFQFSP-LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258

Query: 73  LNVSHNKLSELP-------AAIGELHM--LKSLDVSFNSIMKIPDEI-GSATALVKFDCS 122
            + + N L +         + +G++    ++ L +    +      +      + +    
Sbjct: 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVE 318

Query: 123 SNQLKELPSSLGRCL-NLSDFKASNNCITSL----PEDLADCSKMSKLDVEGNKLTVLSN 177
           ++++  +P S  + L +L     S N +                +  L +  N L  +  
Sbjct: 319 NSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378

Query: 178 --NLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF 235
              ++ +   LT L  S+N  + MP++     ++  L+L    I  + + I    +L   
Sbjct: 379 TGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVL 436

Query: 236 YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEI- 294
            + NN L +    L +L     L +  N+LK     +    L V+ +S N L  +P  I 
Sbjct: 437 DVSNNNLDSFSLFLPRLQ---ELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIF 493

Query: 295 GKMTTLRKLLLTGNPL 310
            ++T+L+K+ L  NP 
Sbjct: 494 DRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  105 bits (263), Expect = 1e-24
 Identities = 55/382 (14%), Positives = 125/382 (32%), Gaps = 48/382 (12%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
           +     V +      + +P+ +     +KSLD+SFN I  I                   
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIG------------------ 42

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
                  L  C NL      ++ I ++  D       +  LD+  N L+ LS++     +
Sbjct: 43  ----HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98

Query: 185 MLTELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSI--PSSISGCCSLAEFYMGNN 240
            L  L    N    +  T    +L+ L  L +      S       +G  SL E  +   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKM 297
           +L    ++ L  +  +  L LH ++          +   +  L+L + +L+        +
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 298 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-------RLPENEDSEASTTKEDLIT 350
             +   +       ++ +         LL+Y+             N   + + ++ D+++
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 351 MATRLSVTS-KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQV 407
              ++   + + L +    L    S ++    ++ ++ +  + +  +P        SL+ 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 408 ------KFSDLVTNKESCISGC 423
                    +      +C    
Sbjct: 339 LDLSENLMVEEYLKNSACKGAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 83.6 bits (207), Expect = 2e-17
 Identities = 37/168 (22%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 47  LQKLILAHNNIEKLKED---LRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
           LQ L+L+ N++  +++    L  L  LT L++S N    +P +      ++ L++S   I
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMS 163
             +   I     L   D S+N L      L     L +   S N + +LP+  +    + 
Sbjct: 423 RVVKTCI--PQTLEVLDVSNNNLDSFSLFLP---RLQELYISRNKLKTLPDA-SLFPVLL 476

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            + +  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  120 bits (303), Expect = 1e-29
 Identities = 73/313 (23%), Positives = 123/313 (39%), Gaps = 34/313 (10%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L+LS+  +  + + V++   +            L+ L LA+N I K+ ++    L  L 
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKD------------LKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSA-TALVKFDCSSNQLKEL 129
           VLN+S+N L EL +     L  +  +D+  N I  I D+       L   D   N L  +
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTE 188
                   ++ D   S N + +LP+        + + +  N+L  L     +     L  
Sbjct: 378 HF----IPSIPDIFLSGNKLVTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQI 430

Query: 189 LIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSI------PSSISGCCSLAEFYMGNN 240
           LI ++N  +      T      L +L L +N +              G   L   Y+ +N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

Query: 241 ALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTT 299
            L++LP      L+ L  L L+SN+L           L +LD+S N L    P++    +
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDV--FVS 548

Query: 300 LRKLLLTGNPLRT 312
           L  L +T N    
Sbjct: 549 LSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (288), Expect = 1e-27
 Identities = 75/419 (17%), Positives = 148/419 (35%), Gaps = 59/419 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNI--------EKLKEDL 64
           S++ S+  +  V     +            +   L    LA N++         K     
Sbjct: 152 SIDFSSNQIFLVCEHELEPL----------QGKTLSFFSLAANSLYSRVSVDWGKCMNPF 201

Query: 65  RNLPLLTVLNVSHNKLSELPA-------------AIGELHMLKSLDVSFNSIMKIPDEI- 110
           RN+ L  +L+VS N  +                 ++   H +      F++I        
Sbjct: 202 RNMVL-EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260

Query: 111 --GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPED-LADCSKMSKLD 166
              + +++   D S   +  L S +   L +L     + N I  + ++       +  L+
Sbjct: 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSS 225
           +  N L  L ++       +  +   KN +  + + T   L +L  LDL  N +    ++
Sbjct: 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL----TT 376

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS---VLDL 282
           I    S+ + ++  N L  LP      +    + L  N+L+   +    LR+    +L L
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLTAN---LIHLSENRLENLDILYFLLRVPHLQILIL 433

Query: 283 SNNSLSGLPPE--IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS-RLPENEDS 339
           + N  S    +    +  +L +L L  N L+    + +       L +L+   L  N  +
Sbjct: 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 340 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                   + +  T L    + LSL    L+ +         +  LD+SRN +    P+
Sbjct: 494 SLP---PGVFSHLTAL----RGLSLNSNRLTVLSHNDL-PANLEILDISRNQLLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  109 bits (273), Expect = 1e-25
 Identities = 84/469 (17%), Positives = 153/469 (32%), Gaps = 71/469 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNF--------------DEAGEGDKWWEAVDLQKLILAHNNIEK 59
           L+L +  +  +  + ++                D   +   +     L +L L+ N I  
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 60  LKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHM--LKSLDVSFNSIMKIPDEIGSA- 113
           L        L  L  ++ S N++  +    +  L    L    ++ NS+           
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 114 ------TALVKFDCSSNQLKELPS-------------SLGRCLNLSDFKASNNCITSLPE 154
                   L   D S N      +             SL    ++       + I    +
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 155 DLADCSKMS---KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLI 210
           +       S    LD+    +  L++ +  +   L  L  + N +N + +     L  L 
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEY 268
            L+L  N +  + SS   G   +A   +  N ++ +  +    L KL TLDL  N L   
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
                   +  + LS N L           TL K+ LT N +    + L N      L  
Sbjct: 378 HFIPS---IPDIFLSGNKL----------VTLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 329 LRS--RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI---- 382
           +     L  N++  +S + +   +    L    ++L L    L                 
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSL----EQLFLGENMLQLAWETELCWDVFEGLS 480

Query: 383 --TKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWNL 429
               L L+ N +  LPP + S  +  ++   L +N+ + +S   L  NL
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLT-ALRGLSLNSNRLTVLSHNDLPANL 528

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  106 bits (267), Expect = 6e-25
 Identities = 73/444 (16%), Positives = 138/444 (31%), Gaps = 65/444 (14%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED--LRNLPLL 70
            L LS   +R V    +                 LQ L L         +    RNLP L
Sbjct: 28  RLLLSFNYIRTVTASSFPFL------------EQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI---PDEIGSATALVKFDCSSNQL 126
            +L++  +K+  L   A   L  L  L + F  +           +  AL + D S NQ+
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 127 KELP--SSLGRCLNLSDFKASNNCITSLP-EDLADCSKMS--KLDVEGNKLTVLSNNLIA 181
           + L    S G+  +L     S+N I  +   +L      +     +  N L    +    
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 182 SWTM------LTELIASKNLLNGMPE-------------TIGSLSRLIRLDLHQNRILSI 222
                     L  L  S N                    ++     ++      + I   
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255

Query: 223 PSSI-SGCC--SLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL--- 275
             +  +G    S+    + +  + +L +     L  L  L+L  N++ +  +        
Sbjct: 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK--IADEAFYGL 313

Query: 276 -RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL---R 330
             L VL+LS N L  L       +  +  + L  N +  ++           L+ L    
Sbjct: 314 DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK--LQTLDLRD 371

Query: 331 SRLPENEDSEASTT---KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG--EITKL 385
           + L       +        + +    ++++T+  + L    L  +    +      +  L
Sbjct: 372 NALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQIL 431

Query: 386 DLSRNSIQELPPE--LSSCASLQV 407
            L++N       +   S   SL+ 
Sbjct: 432 ILNQNRFSSCSGDQTPSENPSLEQ 455

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  103 bits (259), Expect = 7e-24
 Identities = 63/420 (15%), Positives = 138/420 (32%), Gaps = 54/420 (12%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
            D +       N+ ++    + L     L +S N +  + A +   L  L+ L++     
Sbjct: 4   FDGRIAFYRFCNLTQV---PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYT 60

Query: 104 -MKIPDEI-GSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSL---PEDLA 157
            + I  E   +   L   D  S+++  L         +L + +     ++          
Sbjct: 61  PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120

Query: 158 DCSKMSKLDVEGNKLTVLS-NNLIASWTMLTELIASKNLLNGMP-ETIGSLS--RLIRLD 213
           +   +++LD+  N++  L  +        L  +  S N +  +    +  L    L    
Sbjct: 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180

Query: 214 LHQNRILSIPSSISGCC-------SLAEFYMGNNALSALPA-------------ELGKLS 253
           L  N + S  S   G C        L    +  N  +                  L    
Sbjct: 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240

Query: 254 KLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGN 308
            +       + +K+          +  +  LDLS+  +  L   +   +  L+ L L  N
Sbjct: 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN 300

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMATRLSVTSKELSLEGM 367
            +  +      G     L+ L   L  N   E  S+    L  +          + L+  
Sbjct: 301 KINKIADEAFYGLDN--LQVL--NLSYNLLGELYSSNFYGLPKV--------AYIDLQKN 348

Query: 368 NLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLY 426
           +++ I  + ++   ++  LDL  N++  +   + S   + +  + LVT  +  ++   ++
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTI-HFIPSIPDIFLSGNKLVTLPKINLTANLIH 407

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  116 bits (292), Expect = 1e-29
 Identities = 61/308 (19%), Positives = 118/308 (38%), Gaps = 43/308 (13%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  S+  L  VP ++                 D   L L +N I ++K+   +NL  L 
Sbjct: 35  VVQCSDLGLEKVPKDL---------------PPDTALLDLQNNKITEIKDGDFKNLKNLH 79

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
            L + +NK+S++   A   L  L+ L +S N + ++P+       L +     N++ ++ 
Sbjct: 80  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKVR 137

Query: 131 S-SLGRCLNLSDFKASNNCITSL---PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
                    +   +   N + S            K+S + +    +T +   L  S   L
Sbjct: 138 KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---L 194

Query: 187 TELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSA 244
           TEL    N +  +   ++  L+ L +L L  N I ++ + S++    L E ++ NN L  
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +P  L     +  + LH+N +                + +N     P    K  +   + 
Sbjct: 255 VPGGLADHKYIQVVYLHNNNISA--------------IGSNDFCP-PGYNTKKASYSGVS 299

Query: 305 LTGNPLRT 312
           L  NP++ 
Sbjct: 300 LFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  105 bits (265), Expect = 8e-26
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 14/255 (5%)

Query: 70  LTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKE 128
           L V+  S   L ++P  +        LD+  N I +I   +  +   L      +N++ +
Sbjct: 33  LRVVQCSDLGLEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 129 LPSSLGRCL-NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           +       L  L     S N +  LPE +     + +L V  N++T +  ++      + 
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMI 148

Query: 188 ELIASKNLLNGM---PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
            +    N L            + +L  + +    I +IP  +    SL E ++  N ++ 
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITK 206

Query: 245 LPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLR 301
           + A  L  L+ L  L L  N +      +      L  L L+NN L  +P  +     ++
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266

Query: 302 KLLLTGNPLRTLRSS 316
            + L  N +  + S+
Sbjct: 267 VVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  100 bits (252), Expect = 5e-24
 Identities = 56/282 (19%), Positives = 101/282 (35%), Gaps = 65/282 (23%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            L LS   L+++P ++ K                LQ+L +  N I K+++     L  + 
Sbjct: 104 RLYLSKNQLKELPEKMPKT---------------LQELRVHENEITKVRKSVFNGLNQMI 148

Query: 72  VLNVSHNKLSEL---PAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE 128
           V+ +  N L        A   +  L  + ++  +I  IP                     
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG------------------- 189

Query: 129 LPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           LP SL   L+L       N IT +    L   + ++KL +  N ++ + N  +A+   L 
Sbjct: 190 LPPSL-TELHLD-----GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
           EL  + N L  +P  +     +  + LH N I +I S+                    P 
Sbjct: 244 ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND----------------FCPPG 287

Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNN 285
              K +    + L SN ++ + ++     C    + + L N 
Sbjct: 288 YNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 55/261 (21%), Positives = 111/261 (42%), Gaps = 25/261 (9%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETI 203
           S+  +  +P+DL      + LD++ NK+T + +    +   L  LI   N ++ + P   
Sbjct: 39  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 96

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
             L +L RL L +N++  +P  +    +L E  +  N ++ +       L+++  ++L +
Sbjct: 97  APLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 263 NQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           N LK   +E        +LS + +++ +++ +P   G   +L +L L GN +  + ++ +
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASL 212

Query: 319 NGPTPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW 377
            G     L  L    L  N     S      +     L    +EL L    L  +P  + 
Sbjct: 213 KG-----LNNLAKLGLSFNS---ISAVDNGSLANTPHL----RELHLNNNKLVKVPGGLA 260

Query: 378 EAGEITKLDLSRNSIQELPPE 398
           +   I  + L  N+I  +   
Sbjct: 261 DHKYIQVVYLHNNNISAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 44/208 (21%), Positives = 75/208 (36%), Gaps = 41/208 (19%)

Query: 227 SGC-CSLAEFYMGNNALSALPAEL----------------------GKLSKLGTLDLHSN 263
             C C L      +  L  +P +L                        L  L TL L +N
Sbjct: 27  FRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 264 QLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
           ++ +    A    ++L  L LS N L  LP ++    TL++L +  N +  +R S+ NG 
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNG- 143

Query: 322 TPALLKYLRS-RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG 380
               L  +    L  N     S  +        +L      + +   N++ IP  +  + 
Sbjct: 144 ----LNQMIVVELGTNPLKS-SGIENGAFQGMKKL----SYIRIADTNITTIPQGLPPS- 193

Query: 381 EITKLDLSRNSIQELPPE-LSSCASLQV 407
            +T+L L  N I ++    L    +L  
Sbjct: 194 -LTELHLDGNKITKVDAASLKGLNNLAK 220

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (291), Expect = 3e-28
 Identities = 63/420 (15%), Positives = 129/420 (30%), Gaps = 50/420 (11%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
           +      +   +P+ +                   + L L+ N +  L      + P L 
Sbjct: 11  TYQCMELNFYKIPDNL---------------PFSTKNLDLSFNPLRHLGSYSFFSFPELQ 55

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           VL++S  ++  +   A   L  L +L ++ N I  +        ++L K       L  L
Sbjct: 56  VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115

Query: 130 PS-SLGRCLNLSDFKASNNCITSL--PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            +  +G    L +   ++N I S   PE  ++ + +  LD+  NK+  +    +     +
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 187 T----ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS--IPSSISGCCSL------AE 234
                 L  S N +N +        RL +L L  N      + + I G   L        
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 235 FYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL-----RLSVLDLSNNSLS 288
            +     L       L  L  L   +     L  Y  +   L      +S   L + ++ 
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 289 GLPPEIGKMTTLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENED--------- 338
            +          + L L         +  L +                  D         
Sbjct: 296 RVKDFSY-NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
           S    + +   + +   + + K L L    +  + S      ++  LD   ++++++   
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  114 bits (286), Expect = 1e-27
 Identities = 81/444 (18%), Positives = 135/444 (30%), Gaps = 74/444 (16%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK--EDLRNLPLL 70
            L     +L  + N    +               L++L +AHN I+  K  E   NL  L
Sbjct: 104 KLVAVETNLASLENFPIGHLKT------------LKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 71  TVLNVSHNKLSELPA-AIGELHMLK----SLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
             L++S NK+  +    +  LH +     SLD+S N +  I         L K    +N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 126 LK---------ELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
                       L       L L +F+   N        L     ++  +     L    
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271

Query: 177 NNLIAS-------------------------WTMLTELIASKNLLNGMPETIGSLSRLIR 211
           +++I                                 L          P     L  L R
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKR 329

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEY 268
           L    N+  +  S +    SL    +  N LS            + L  LDL  N +   
Sbjct: 330 LTFTSNKGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

Query: 269 CVEACQL-RLSVLDLSNNSLSGLPPEI--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
                 L +L  LD  +++L  +        +  L  L ++    R   + + NG +   
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--S 446

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITK 384
           L+ L+  +  N   E      D+ T    L      L L    L  +    +     +  
Sbjct: 447 LEVLK--MAGNSFQE--NFLPDIFTELRNL----TFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 385 LDLSRNSIQELPPE-LSSCASLQV 407
           L+++ N ++ +P        SLQ 
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQK 522

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (268), Expect = 3e-25
 Identities = 55/319 (17%), Positives = 114/319 (35%), Gaps = 19/319 (5%)

Query: 117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
           + + C      ++P +L    +  +   S N +  L         ++  LD+   ++  +
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +  I    +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSV--LDLSNN 285
           E  + +N + +   P     L+ L  LDL SN+++           Q+ L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LKYLRSRLPENEDSEAST 343
            ++ + P   K   L KL L  N       +++      L  L+  R  L E  +     
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSL---NVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 344 TK-EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 402
              +  +     L++    L+     L  I         ++   L   +I+ +     + 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 403 ASLQVKFSDLVTNKESCIS 421
               ++  +    +   + 
Sbjct: 305 GWQHLELVNCKFGQFPTLK 323

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.2 bits (245), Expect = 3e-22
 Identities = 54/261 (20%), Positives = 85/261 (32%), Gaps = 18/261 (6%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           ++    L    IE++ +D         L + + K  + P    +L  LK L  + N    
Sbjct: 283 NVSSFSLVSVTIERV-KDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339

Query: 106 IPDEIGSATALVKFDCSSNQLKEL---PSSLGRCLNLSDFKASNNCITSLPEDLADCSKM 162
              E+    +L   D S N L        S     +L     S N + ++  +     ++
Sbjct: 340 AFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 163 SKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL 220
             LD + + L  +S  ++  S   L  L  S              LS L  L +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 221 SI--PSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR- 276
               P   +   +L    +    L  L       LS L  L++ SNQLK   V       
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDR 516

Query: 277 ---LSVLDLSNNSLSGLPPEI 294
              L  + L  N      P I
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRI 537

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 35/171 (20%), Positives = 63/171 (36%), Gaps = 6/171 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNSIM 104
           L+ L L+ N +  +  +   L  L  L+  H+ L ++        L  L  LD+S     
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434

Query: 105 KIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPED-LADCS 160
              + I    ++L     + N  +E  LP       NL+    S   +  L        S
Sbjct: 435 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
            +  L++  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 545

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  109 bits (274), Expect = 4e-27
 Identities = 49/248 (19%), Positives = 105/248 (42%), Gaps = 10/248 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K+    +N+        +L  +T L+     ++ +   +  L+ L  L++  N I  
Sbjct: 20  NAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQITD 77

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           +   + + T + + + S N LK + S++    ++     ++  IT +   LA  S +  L
Sbjct: 78  LA-PLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVL 134

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
            ++ N++T +S   +A  T L  L      ++ +   + +LS+L  L    N+I  I S 
Sbjct: 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TPLANLSKLTTLKADDNKISDI-SP 190

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
           ++   +L E ++ NN +S +   L   S L  + L +  +    V      +    +   
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGP 249

Query: 286 SLSGLPPE 293
           S + + P 
Sbjct: 250 SGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  102 bits (257), Expect = 7e-25
 Identities = 50/260 (19%), Positives = 98/260 (37%), Gaps = 33/260 (12%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           I     I  +      L     +    + +++      +L  + +L      +  I   +
Sbjct: 3   ITQPTAINVI-FPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTTIE-GV 59

Query: 111 GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN 170
                L+  +   NQ+ +L + L     +++ + S N + ++   +A    +  LD+   
Sbjct: 60  QYLNNLIGLELKDNQITDL-APLKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTST 117

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
           ++T ++                          +  LS L  L L  N+I +I S ++G  
Sbjct: 118 QITDVTP-------------------------LAGLSNLQVLYLDLNQITNI-SPLAGLT 151

Query: 231 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
           +L    +GN  +S L   L  LSKL TL    N++ +    A    L  + L NN +S +
Sbjct: 152 NLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDV 210

Query: 291 PPEIGKMTTLRKLLLTGNPL 310
            P +   + L  + LT   +
Sbjct: 211 SP-LANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 49/285 (17%), Positives = 92/285 (32%), Gaps = 68/285 (23%)

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT 173
              +K     + + +   +      ++   A    +T++ E +   + +  L+++ N++T
Sbjct: 19  ANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQIT 76

Query: 174 VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLA 233
            L+   + + T +TEL  S N L  +   I  L  +  LDL   +I  +           
Sbjct: 77  DLAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDVTP--------- 124

Query: 234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE 293
                          L  LS L  L L  NQ+      A    L  L + N  +S L P 
Sbjct: 125 ---------------LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP- 168

Query: 294 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 353
           +  ++ L  L    N +  +          A L  L                        
Sbjct: 169 LANLSKLTTLKADDNKISDI-------SPLASLPNLI----------------------- 198

Query: 354 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                  E+ L+   +S + S +     +  + L+  +I   P  
Sbjct: 199 -------EVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVF 235

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 43/221 (19%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
             ++ A K+ +     T   L  +  L      + +I   +    +L    + +N ++ L
Sbjct: 21  AIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDL 78

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
              L  L+K+  L+L  N LK     A    +  LDL++  ++ + P +  ++ L+ L L
Sbjct: 79  A-PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL 136

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
             N +  + S L        L  L                              + LS+ 
Sbjct: 137 DLNQITNI-SPLAG------LTNL------------------------------QYLSIG 159

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
              +S + + +    ++T L    N I ++ P L+S  +L 
Sbjct: 160 NAQVSDL-TPLANLSKLTTLKADDNKISDISP-LASLPNLI 198

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  109 bits (275), Expect = 2e-26
 Identities = 60/271 (22%), Positives = 105/271 (38%), Gaps = 36/271 (13%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
                +  + R L +VP  +  N                + L L  NNI+ ++ D  R+L
Sbjct: 54  NQFSKVVCTRRGLSEVPQGIPSN---------------TRYLNLMENNIQMIQADTFRHL 98

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQ 125
             L VL +  N + ++   A   L  L +L++  N +  IP       + L +    +N 
Sbjct: 99  HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP 158

Query: 126 LKELPS-------SLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSN 177
           ++ +PS       SL   L+L +       +  + E        +  L++    +  + N
Sbjct: 159 IESIPSYAFNRVPSL-MRLDLGE----LKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN 213

Query: 178 NLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEF 235
             +     L EL  S N    +   +   LS L +L +  +++  I   +  G  SL E 
Sbjct: 214 --LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
            + +N LS+LP +    L  L  L LH N  
Sbjct: 272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 96.4 bits (240), Expect = 7e-22
 Identities = 46/203 (22%), Positives = 74/203 (36%), Gaps = 14/203 (6%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C+   L E+P  +    R LNL       N I  +  D       +  L +  N +  +
Sbjct: 60  VCTRRGLSEVPQGIPSNTRYLNLM-----ENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 176 SNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
                     L  L    N L  +P      LS+L  L L  N I SIPS   +   SL 
Sbjct: 115 EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLM 174

Query: 234 EFYMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
              +G    L  +       L  L  L+L    +K+       + L  L++S N    + 
Sbjct: 175 RLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234

Query: 292 PE-IGKMTTLRKLLLTGNPLRTL 313
           P     +++L+KL +  + +  +
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLI 257

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.9 bits (179), Expect = 4e-14
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 65/259 (25%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETI 203
           +   ++ +P+ +   S    L++  N + ++  +       L  L   +N +        
Sbjct: 62  TRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDL- 260
             L+ L  L+L  N +  IPS        L E ++ NN + ++P+    ++  L  LDL 
Sbjct: 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG 179

Query: 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
              +L+               +S  +  GL         L+ L L    ++ +       
Sbjct: 180 ELKKLEY--------------ISEGAFEGLF-------NLKYLNLGMCNIKDM------- 211

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEA 379
           P    L  L                               EL + G +   I        
Sbjct: 212 PNLTPLVGLE------------------------------ELEMSGNHFPEIRPGSFHGL 241

Query: 380 GEITKLDLSRNSIQELPPE 398
             + KL +  + +  +   
Sbjct: 242 SSLKKLWVMNSQVSLIERN 260

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  109 bits (273), Expect = 3e-26
 Identities = 56/306 (18%), Positives = 112/306 (36%), Gaps = 67/306 (21%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +    ++LR+VP+ +               + + + L L  N I+ +K    ++L  L 
Sbjct: 47  KVICVRKNLREVPDGI---------------STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           +L +S N +  +   A   L  L +L++  N +  IP+      + L +    +N ++ +
Sbjct: 92  ILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI 151

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV-EGNKLTVLSNNLIASWTMLTE 188
           PS                              + +LD+ E  +L+ +S       + L  
Sbjct: 152 PSYA----------------------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
           L  +   L  +P  +  L +L  LDL  N + +I                          
Sbjct: 190 LNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGS---------------------- 226

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLL 305
              L  L  L +  +Q++     A      L  ++L++N+L+ LP ++   +  L ++ L
Sbjct: 227 FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

Query: 306 TGNPLR 311
             NP  
Sbjct: 287 HHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 3e-22
 Identities = 52/203 (25%), Positives = 77/203 (37%), Gaps = 14/203 (6%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVL 175
            C    L+E+P  +    R LNL       N I  +          +  L +  N +  +
Sbjct: 49  ICVRKNLREVPDGISTNTRLLNLH-----ENQIQIIKVNSFKHLRHLEILQLSRNHIRTI 103

Query: 176 SNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
                     L  L    N L  +P      LS+L  L L  N I SIPS   +   SL 
Sbjct: 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR 163

Query: 234 EFYMG-NNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP 291
              +G    LS +       LS L  L+L    L+E       ++L  LDLS N LS + 
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIR 223

Query: 292 PEI-GKMTTLRKLLLTGNPLRTL 313
           P     +  L+KL +  + ++ +
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVI 246

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 49/262 (18%), Positives = 100/262 (38%), Gaps = 45/262 (17%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TI 203
               +  +P+ ++  +    L++  N++ ++  N       L  L  S+N +  +     
Sbjct: 51  VRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF 108

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDL- 260
             L+ L  L+L  NR+ +IP+        L E ++ NN + ++P+    ++  L  LDL 
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG 168

Query: 261 HSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
              +L      A      L  L+L+  +L  +P  +  +  L +L L+GN L  +R    
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSF 227

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IW 377
            G     L +L+                              +L +    +  I      
Sbjct: 228 QG-----LMHLQ------------------------------KLWMIQSQIQVIERNAFD 252

Query: 378 EAGEITKLDLSRNSIQELPPEL 399
               + +++L+ N++  LP +L
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDL 274

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 42/203 (20%), Positives = 80/203 (39%), Gaps = 31/203 (15%)

Query: 207 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQL 265
           ++  ++   +  +  +P  IS   +     +  N +  +       L  L  L L  N +
Sbjct: 43  NQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100

Query: 266 KEYCVEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
           +   + A      L+ L+L +N L+ +P      ++ L++L L  NP+ ++ S   N   
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160

Query: 323 PALLKYLR-------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE 375
              L+ L        S + E          E L    + L    + L+L   NL  IP+ 
Sbjct: 161 --SLRRLDLGELKRLSYISEG-------AFEGL----SNL----RYLNLAMCNLREIPN- 202

Query: 376 IWEAGEITKLDLSRNSIQELPPE 398
           +    ++ +LDLS N +  + P 
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPG 225

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  109 bits (272), Expect = 9e-26
 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 32/242 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + + I     I+++             N+    +++      EL+ +  +  + + I  +
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV 58

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              I     + K   + N+L ++   L    NL       N I  L   L D  K+  L 
Sbjct: 59  -QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLS 115

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +E N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I    
Sbjct: 116 LEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-- 170

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
                                 L  L+KL  L L  N + +    A    L VL+L +  
Sbjct: 171 ----------------------LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208

Query: 287 LS 288
             
Sbjct: 209 CL 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.5 bits (159), Expect = 1e-11
 Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 21/222 (9%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           + E I     +  +     + +  I+ +L +  +     + +   S+ +    N+ + ++
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV 58

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
              +  L  +  L L+ N+L +         L  L L  N +  L   +  +  L+ L L
Sbjct: 59  QG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSL 116

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
             N +  + + LV+ P    L+ L   L  N+ ++ +      ++  T+L      LSLE
Sbjct: 117 EHNGISDI-NGLVHLPQ---LESLY--LGNNKITDITV-----LSRLTKL----DTLSLE 161

Query: 366 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQV 407
              +S I   +    ++  L LS+N I +L   L+   +L V
Sbjct: 162 DNQISDI-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDV 201

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.4 bits (143), Expect = 1e-09
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L+ L L +N I  +   L  L  L  L++  N++S++   +  L  L++L +S N I  +
Sbjct: 133 LESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDL 190

Query: 107 PDEIGSATALVKFDCSSNQL-KELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
              +     L   +  S +   +  +     +  +  K ++  + + PE ++D     K 
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT-PEIISDDGDYEKP 248

Query: 166 DVEGNKLT 173
           +V+ +   
Sbjct: 249 NVKWHLPE 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  103 bits (260), Expect = 2e-25
 Identities = 48/246 (19%), Positives = 91/246 (36%), Gaps = 10/246 (4%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I+++             N+    +++      EL+ +  +  + + I  +  
Sbjct: 6   ETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-Q 62

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
            I     + K   + N+L ++   L    NL       N +  L   L D  K+  L +E
Sbjct: 63  GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLE 120

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N ++ ++   +     L  L    N +  +   +  L++L  L L  N+I  I   ++G
Sbjct: 121 HNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAG 176

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
              L   Y+  N +S L   L  L  L  L+L S +     +      +    + N   S
Sbjct: 177 LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 235

Query: 289 GLPPEI 294
            + PEI
Sbjct: 236 LVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 86.3 bits (214), Expect = 4e-19
 Identities = 39/179 (21%), Positives = 82/179 (45%), Gaps = 8/179 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           + ++I  +++I+ + + ++ LP +T L ++ NKL+++   +  L  L  L +  N +  +
Sbjct: 48  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDL 105

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +     L       N + ++ + L     L      NN IT +   L+  +K+  L 
Sbjct: 106 -SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 162

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +E N+++ +    +A  T L  L  SKN ++ +   +  L  L  L+L     L+ P +
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 7e-16
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 6/178 (3%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           L  L L  N ++ L   L++L  L  L++ HN +S++   +  L  L+SL +  N I  I
Sbjct: 92  LGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI 149

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L       NQ+ ++   L     L +   S N I+ L   LA    +  L+
Sbjct: 150 TV-LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLE 206

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 224
           +   +      N  ++  +   +  +   L   PE I       + ++  +       
Sbjct: 207 LFSQECLNKPINHQSNLVVPNTVKNTDGSLV-TPEIISDDGDYEKPNVKWHLPEFTNE 263

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 40/255 (15%), Positives = 86/255 (33%), Gaps = 45/255 (17%)

Query: 144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI 203
                I  +       ++  K +++   +T            + ++IA+ + +  + + I
Sbjct: 9   TVPTPIKQI-FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-QGI 64

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN 263
             L  + +L L+ N++  I   ++   +L   ++  N +  L + L  L KL +L L  N
Sbjct: 65  QYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122

Query: 264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP 323
            + +        +L  L L NN ++ +   + ++T L  L L  N +  +   L      
Sbjct: 123 GISDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDI-VPLAG---- 176

Query: 324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEIT 383
             L  L                              + L L   ++S +   +     + 
Sbjct: 177 --LTKL------------------------------QNLYLSKNHISDL-RALAGLKNLD 203

Query: 384 KLDLSRNSIQELPPE 398
            L+L        P  
Sbjct: 204 VLELFSQECLNKPIN 218

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 25/225 (11%)

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA 244
           + +E I     +  +  +  + +  I+ +L +  +     + +   S+ +    N+ + +
Sbjct: 3   LGSETITVPTPIKQI-FSDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKS 60

Query: 245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +   +  L  +  L L+ N+L +    A    L  L L  N +  L   +  +  L+ L 
Sbjct: 61  VQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLS 118

Query: 305 LTGNPLRTLR--SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362
           L  N +  +     L        L+ L   L  N+ ++ +      ++  T+L      L
Sbjct: 119 LEHNGISDINGLVHLPQ------LESLY--LGNNKITDITV-----LSRLTKL----DTL 161

Query: 363 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQV 407
           SLE   +S I   +    ++  L LS+N I +L   L+   +L V
Sbjct: 162 SLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDV 204

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 4e-25
 Identities = 57/309 (18%), Positives = 91/309 (29%), Gaps = 68/309 (22%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +  +++ L  VP  +  +                 +L L  N ++ L       L  LT
Sbjct: 11  EIRCNSKGLTSVPTGIPSS---------------ATRLELESNKLQSLPHGVFDKLTQLT 55

Query: 72  VLNVSHNKLSELPAAIGE---LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE 128
            L++S N LS              LK LD+SFN ++ +         L   D   + LK+
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 129 LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
           +                                +  LD+      V  N +    + L  
Sbjct: 116 MSE---------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154

Query: 189 LIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 246
           L  + N       P+    L  L  LDL Q ++  +  +                     
Sbjct: 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-------------------- 194

Query: 247 AELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLPPEI--GKMTTLRK 302
                LS L  L++  N           C   L VLD S N +     +      ++L  
Sbjct: 195 --FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252

Query: 303 LLLTGNPLR 311
           L LT N   
Sbjct: 253 LNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.1 bits (237), Expect = 4e-22
 Identities = 43/207 (20%), Positives = 76/207 (36%), Gaps = 18/207 (8%)

Query: 120 DCSSNQLKELPSSLG---RCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C+S  L  +P+ +      L L      +N + SLP       ++++KL +  N L+  
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 176 SNNLIASW--TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS--ISGCCS 231
                + +  T L  L  S N +  M      L +L  LD   + +  +          +
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 232 LAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSL 287
           L    + +             LS L  L +  N  +E  +         L+ LDLS   L
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 288 SGLPPEI-GKMTTLRKLLLTGNPLRTL 313
             L P     +++L+ L ++ N   +L
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSL 214

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 45/227 (19%), Positives = 73/227 (32%), Gaps = 40/227 (17%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYC 269
            +  +   + S+P+ I    S     + +N L +LP     KL++L  L L SN L    
Sbjct: 11  EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
             +        L  LDLS N +  +      +  L  L    + L+ +    V      L
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 326 -----------------------LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 362
                                  L+ L  ++  N  S       D+ T    L      L
Sbjct: 129 IYLDISHTHTRVAFNGIFNGLSSLEVL--KMAGN--SFQENFLPDIFTELRNL----TFL 180

Query: 363 SLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQV 407
            L    L  +    + +   +  L++S N+   L         SLQV
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 11/130 (8%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C   C    + +  ++  L+ +P  I   ++  +L L  N L++L   + +  T   L  
Sbjct: 1   CPSRCSCSGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLT--QLTK 56

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L   L  N  S      +      T L    K L L    +  + S      ++  LD  
Sbjct: 57  L--SLSSNGLSFKGCCSQSDFGT-TSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109

Query: 389 RNSIQELPPE 398
            ++++++   
Sbjct: 110 HSNLKQMSEF 119

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  103 bits (258), Expect = 1e-24
 Identities = 59/353 (16%), Positives = 122/353 (34%), Gaps = 62/353 (17%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLP 68
            +G    S+ SL  +P+ +                  ++ L L++N I  +   DL+   
Sbjct: 32  RNGICKGSSGSLNSIPSGL---------------TEAVKSLDLSNNRITYISNSDLQRCV 76

Query: 69  LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQL 126
            L  L ++ N ++ +   +   L  L+ LD+S+N +  +        ++L   +   N  
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 127 KELP--SSLGRCLNLSDFK-ASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
           K L   S       L   +  + +  T +     A  + + +L+++ + L       + S
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 183 WTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP---------SSISGCCSL 232
              ++ LI        + E      S +  L+L    + +           +S+    + 
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
               + + +L  +   L ++S L  L+   NQLK               + +     L  
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLK--------------SVPDGIFDRLT- 301

Query: 293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 345
                 +L+K+ L  NP            +   + YL   L +N   E  + K
Sbjct: 302 ------SLQKIWLHTNPWDC---------SCPRIDYLSRWLNKNSQKEQGSAK 339

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.4 bits (248), Expect = 3e-23
 Identities = 58/290 (20%), Positives = 106/290 (36%), Gaps = 40/290 (13%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
             SS  L  +PS L     +     SNN IT +   DL  C  +  L +  N +  +  +
Sbjct: 37  KGSSGSLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI--SGCCSLAEF 235
             +S   L  L  S N L+ +  +    LS L  L+L  N   ++  +   S    L   
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 236 YMGNNA-LSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLP 291
            +GN    + +  +    L+ L  L++ ++ L+ Y  ++ +    +S L L       L 
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 292 PEI-GKMTTLRKLLLTGNPLRTLR-SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLI 349
                  +++  L L    L T   S L  G T +L+K    R                 
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR----------------- 257

Query: 350 TMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 399
                       + +   +L  +   + +   + +L+ SRN ++ +P  +
Sbjct: 258 -----------NVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 99.7 bits (249), Expect = 7e-24
 Identities = 59/264 (22%), Positives = 91/264 (34%), Gaps = 44/264 (16%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNL 67
               + +   + L+ VP  +                   Q++ L  N I  +     R  
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIP---------------AASQRIFLHGNRISHVPAASFRAC 55

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQL 126
             LT+L +  N L+ + A A   L +L+ LD+S N                       QL
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN----------------------AQL 93

Query: 127 KELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWT 184
           + +  +       L         +  L        + +  L ++ N L  L ++      
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 185 MLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNAL 242
            LT L    N ++ +PE     L  L RL LHQNR+  +          L   Y+  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 243 SALPAE-LGKLSKLGTLDLHSNQL 265
           SALP E L  L  L  L L+ N  
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 93.9 bits (234), Expect = 8e-22
 Identities = 49/204 (24%), Positives = 74/204 (36%), Gaps = 14/204 (6%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
            C    L+ +P  +             N I+ +P      C  ++ L +  N L  +   
Sbjct: 17  SCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 179 LIASWTMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEF 235
                 +L +L  S N       P T   L RL  L L +  +  +   +  G  +L   
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 236 YMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQLR----LSVLDLSNNSLSGL 290
           Y+ +NAL ALP +    L  L  L LH N++    V     R    L  L L  N ++ +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 291 PPEI-GKMTTLRKLLLTGNPLRTL 313
            P     +  L  L L  N L  L
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSAL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 48/254 (18%), Positives = 84/254 (33%), Gaps = 52/254 (20%)

Query: 158 DCSKMSKLDV--EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDL 214
            C    K+        L  +   + A+      +    N ++ +P  +  +   L  L L
Sbjct: 7   VCYNEPKVTTSCPQQGLQAVPVGIPAA---SQRIFLHGNRISHVPAASFRACRNLTILWL 63

Query: 215 HQNRILSIPSSI-SGCCSLAEFYMGNNA-LSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
           H N +  I ++  +G   L +  + +NA L ++       L +L TL L    L+E  + 
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE--LG 121

Query: 272 ACQL----RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
                    L  L L +N+L  LP +    +  L  L L GN + ++      G     L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-----L 176

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKL 385
             L                                L L    ++ +    +   G +  L
Sbjct: 177 HSLD------------------------------RLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 386 DLSRNSIQELPPEL 399
            L  N++  LP E 
Sbjct: 207 YLFANNLSALPTEA 220

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.4 bits (248), Expect = 7e-23
 Identities = 57/306 (18%), Positives = 110/306 (35%), Gaps = 39/306 (12%)

Query: 47  LQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSEL---PAAIGELHMLKSLDVSFNS 102
           L  L L +N   +L+      L  L VL ++   L            L  L+ L +  N+
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN 140

Query: 103 IMKIPDEI--GSATALVKFDCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLA 157
           I KI       +       D + N++K +        +  + +  + S+  +  + E   
Sbjct: 141 IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200

Query: 158 D---------CSKMSKLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLLNGMPETI 203
                      + ++ LD+ GN           + +  +      L  S N+ +    T 
Sbjct: 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260

Query: 204 GS-----------LSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LG 250
                         S +   DL +++I ++  S+ S    L +  +  N ++ +      
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320

Query: 251 KLSKLGTLDLHSNQLKE--YCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTG 307
            L+ L  L+L  N L      +     +L VLDLS N +  L  +    +  L++L L  
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380

Query: 308 NPLRTL 313
           N L+++
Sbjct: 381 NQLKSV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 87.9 bits (218), Expect = 5e-19
 Identities = 54/299 (18%), Positives = 103/299 (34%), Gaps = 55/299 (18%)

Query: 47  LQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPAAI---GELHMLKSLDVSFN 101
           L+ L+L  NNI+K++      N+    VL+++ NK+  +        +      L +S  
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190

Query: 102 SIMKIPDEIGSATALVKFDC---------SSNQLKELPSSL--------------GRCLN 138
           ++  + +                      S N  KE  +                     
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 139 LSDFKASNNCITSLPEDL---ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL 195
                  +              + S +   D+  +K+  L  ++ + +T L +L  ++N 
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 196 LNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKL 252
           +N + +     L+ L++L+L QN + SI S +      L    +  N + AL  +    L
Sbjct: 311 INKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
             L  L L +NQLK               + +     L        +L+K+ L  NP  
Sbjct: 371 PNLKELALDTNQLKS--------------VPDGIFDRLT-------SLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 86.7 bits (215), Expect = 1e-18
 Identities = 57/387 (14%), Positives = 120/387 (31%), Gaps = 62/387 (16%)

Query: 45  VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL--PAAIGELHMLKSLDVSFN 101
             +  + L+ N+I +L E     L  L  L V       +        L  L  L + +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKE--LPSSLGRCL-NLSDFKASNNCITSLPEDLA 157
             +++          L     +   L    L  +  + L +L      +N I  +     
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 158 DCS--KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
             +  +   LD+  NK+  +    + +               G   T+  LS +   D++
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLN-------------FQGKHFTLLRLSSITLQDMN 196

Query: 216 QNRILSIPS-SISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDLHSNQLKEYCV 270
           +  +      +     S+    +  N      A+        +K+ +L L ++       
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256

Query: 271 EACQLR--------------LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRS 315
                +              +   DLS + +  L   +    T L +L L  N +  +  
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316

Query: 316 ----SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA 371
                L +      L  L   L +N      +    +     +L    + L L   ++ A
Sbjct: 317 NAFWGLTH------LLKLN--LSQNF---LGSIDSRMFENLDKL----EVLDLSYNHIRA 361

Query: 372 IPSEIWEA-GEITKLDLSRNSIQELPP 397
           +  + +     + +L L  N ++ +P 
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 84.4 bits (209), Expect = 6e-18
 Identities = 56/306 (18%), Positives = 105/306 (34%), Gaps = 33/306 (10%)

Query: 120 DCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKL-TVL 175
            C +  L ++P   +    ++LS      N I  L E   +    +  L VE      V+
Sbjct: 16  ICINRGLHQVPELPAHVNYVDLS-----LNSIAELNETSFSRLQDLQFLKVEQQTPGLVI 70

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILS--IPSSI-SGCCS 231
            NN     + L  L    N    +       L+ L  L L Q  +    +  +      S
Sbjct: 71  RNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS 130

Query: 232 LAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCVEA----CQLRLSVLDLSNN 285
           L    + +N +  +   +    + +   LDL  N++K  C E          ++L LS+ 
Sbjct: 131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190

Query: 286 SLSGLPPEIG---------KMTTLRKLLLTGNPLRTLRSS-LVNGPTPALLKYLRSRLPE 335
           +L  +              K T++  L L+GN  +   +    +      ++ L      
Sbjct: 191 TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 336 NEDSEASTTKEDLITMAT--RLSVTS-KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNS 391
           N  S    T        T   L  +  K   L    + A+   ++    ++ +L L++N 
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 392 IQELPP 397
           I ++  
Sbjct: 311 INKIDD 316

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 95.6 bits (238), Expect = 2e-22
 Identities = 54/195 (27%), Positives = 80/195 (41%), Gaps = 9/195 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNN 178
           +C    L  LP  L +  + +    S N + +     L   +++++L+++  +LT L   
Sbjct: 16  NCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-- 71

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYM 237
           +  +  +L  L  S N L  +P    +L  L  LD+  NR+ S+P     G   L E Y+
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 238 GNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEI 294
             N L  LP  L     KL  L L +N L E           L  L L  NSL  +P   
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 295 GKMTTLRKLLLTGNP 309
                L    L GNP
Sbjct: 192 FGSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.7 bits (215), Expect = 3e-19
 Identities = 55/208 (26%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLT 71
            +N   R+L  +P ++                 D   L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDL---------------PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +L++L    G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L  L +     N + +LP  L     K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.8 bits (210), Expect = 1e-18
 Identities = 45/202 (22%), Positives = 74/202 (36%), Gaps = 6/202 (2%)

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSS 123
             +     +N     L+ LP  +        L +S N +           T L + +   
Sbjct: 7   SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASW 183
            +L +L    G    L     S+N + SLP        ++ LDV  N+LT L    +   
Sbjct: 65  AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 184 TMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNA 241
             L EL    N L  +P  +     +L +L L  N +  +P+ + +G  +L    +  N+
Sbjct: 124 GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183

Query: 242 LSALPAELGKLSKLGTLDLHSN 263
           L  +P        L    LH N
Sbjct: 184 LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 43/203 (21%), Positives = 76/203 (37%), Gaps = 27/203 (13%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCV 270
           ++  +  + ++P  +         ++  N L       L   ++L  L+L   +L +  V
Sbjct: 15  VNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 271 EACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
           +     L  LDLS+N L  LP     +  L  L ++ N L +L    + G     L+ L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE--LQELY 130

Query: 331 ------SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEIT 383
                   LP             L+T   +L    ++LSL   NL+ +P+ +      + 
Sbjct: 131 LKGNELKTLP-----------PGLLTPTPKL----EKLSLANNNLTELPAGLLNGLENLD 175

Query: 384 KLDLSRNSIQELPPELSSCASLQ 406
            L L  NS+  +P        L 
Sbjct: 176 TLLLQENSLYTIPKGFFGSHLLP 198

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 15/129 (11%)

Query: 269 CVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
           C  +       ++    +L+ LPP++        L L+ N L T   + +   T   L  
Sbjct: 4   CEVSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTR--LTQ 59

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS 388
           L   L   E ++              L      L L    L ++P        +T LD+S
Sbjct: 60  L--NLDRAELTKLQVDGT-----LPVL----GTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

Query: 389 RNSIQELPP 397
            N +  LP 
Sbjct: 109 FNRLTSLPL 117

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 91.2 bits (227), Expect = 6e-21
 Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 26/226 (11%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
              + L L+ N +  L      + P L VL++S  ++  +   A   L  L +L ++ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 103 IMKIPDEIGSA-TALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPED--LAD 158
           I  +     S  ++L K       L  L +   G    L +   ++N I S       ++
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR 218
            + +  LD+  NK+  +    +     +  L                    + LDL  N 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL-------------------NLSLDLSLNP 188

Query: 219 ILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
           +  I         L E  +  N L ++P     +L+ L  + LH+N
Sbjct: 189 MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 88.9 bits (221), Expect = 4e-20
 Identities = 43/208 (20%), Positives = 83/208 (39%), Gaps = 19/208 (9%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
            C      ++P +L    + L+LS      N +  L         ++  LD+   ++  +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLS-----FNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
            +    S + L+ LI + N +  +       LS L +L   +  + S+ +       +L 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 234 EFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEAC------QLRLSVLDLSNN 285
           E  + +N + +         L+ L  LDL SN+++              L    LDLS N
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
            ++ + P   K   L++L L  N L+++
Sbjct: 188 PMNFIQPGAFKEIRLKELALDTNQLKSV 215

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 57/266 (21%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI- 203
                  +P++L        LD+  N L  L +    S+  L  L  S+  +  + +   
Sbjct: 15  MELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 204 GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLH 261
            SLS L  L L  N I S+     SG  SL +       L++L     G L  L  L++ 
Sbjct: 73  QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 132

Query: 262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 321
            N ++ +                   S L       T L  L L+ N ++++        
Sbjct: 133 HNLIQSF-------------KLPEYFSNL-------TNLEHLDLSSNKIQSI-------- 164

Query: 322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE 381
               L+ L                        ++ + +  L L    ++ I    ++   
Sbjct: 165 YCTDLRVL-----------------------HQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 382 ITKLDLSRNSIQELPPE-LSSCASLQ 406
           + +L L  N ++ +P        SLQ
Sbjct: 202 LKELALDTNQLKSVPDGIFDRLTSLQ 227

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 90.2 bits (223), Expect = 1e-19
 Identities = 44/249 (17%), Positives = 67/249 (26%), Gaps = 15/249 (6%)

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC 148
                K   +  +       +  +   L + + S  +   L S L  C  L +       
Sbjct: 324 GSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQEL--EPEN 381

Query: 149 ITSLPEDLADCSKMSKLDVEGNKLTVLSN-NLIASWTMLTELIASKNLLNGMPETIGSLS 207
              L   +     +  L  E   L   S    +               L          +
Sbjct: 382 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 441

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            +  L L    +  +   +     +    + +N L ALP  L  L  L  L    N L+ 
Sbjct: 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500

Query: 268 YCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               A   RL  L L NN L        +     L  L L GN L              +
Sbjct: 501 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGI 551

Query: 326 LKYLRSRLP 334
            + L   LP
Sbjct: 552 QERLAEMLP 560

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.3 bits (179), Expect = 4e-14
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
            E  D++ L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N
Sbjct: 438 MEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN 496

Query: 102 SIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           ++  +   + +   L +    +N+L++  +   L  C  L       N +     
Sbjct: 497 ALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 50/286 (17%), Positives = 83/286 (29%), Gaps = 63/286 (22%)

Query: 122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIA 181
             ++ +           L   + S    T L  +L  C ++ +L+ E         N   
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPE---------NKWC 384

Query: 182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 241
             T++  + A   LL    ET+   S L  +D  +   L    S     +        + 
Sbjct: 385 LLTIILLMRALDPLLYE-KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLR 301
                           L L    L   C     L ++ LDLS+N L  LPP +  +  L 
Sbjct: 444 R--------------VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLE 489

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 361
            L  + N L  +   + N      L  L                              +E
Sbjct: 490 VLQASDNALENV-DGVAN------LPRL------------------------------QE 512

Query: 362 LSLEGMNLSAIPS--EIWEAGEITKLDLSRNSIQELPPELSSCASL 405
           L L    L    +   +     +  L+L  NS+ +        A +
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 40/322 (12%), Positives = 78/322 (24%), Gaps = 45/322 (13%)

Query: 90  LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCI 149
              L       + +  +      A   V F         + + L                
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRL 209
                       +    +           +        E +  K+          +  +L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 210 IRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 269
            R +L   +   + S +  C  L E    N     L   +  +  L  L      L+ + 
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENK--WCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 270 ----VEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL 325
               V+  +    + DL +  L        +   +R L L    L  L            
Sbjct: 410 TLKAVDPMRA-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH---------- 458

Query: 326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 385
           L+ L                           +    L L    L A+P  +     +  L
Sbjct: 459 LEQL---------------------------LLVTHLDLSHNRLRALPPALAALRCLEVL 491

Query: 386 DLSRNSIQELPPELSSCASLQV 407
             S N+++ +   +++   LQ 
Sbjct: 492 QASDNALENVDG-VANLPRLQE 512

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 86.5 bits (214), Expect = 2e-18
 Identities = 61/445 (13%), Positives = 128/445 (28%), Gaps = 77/445 (17%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L LS+  +R +   V+                DL+ L ++HN ++ +      +  L  L
Sbjct: 81  LRLSHNRIRSLDFHVFLFN------------QDLEYLDVSHNRLQNISCC--PMASLRHL 126

Query: 74  NVSHNKLSELP--AAIGELHMLKSLDVSFNSIMKIP------------------------ 107
           ++S N    LP     G L  L  L +S     ++                         
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGG 186

Query: 108 ---DEIGSATALVKFDCSSNQLKELPSSLGRC-------LNLSDFKASNNCITSLPEDLA 157
                    T ++      N L  +  ++           N+     +   + +   +L 
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELT 246

Query: 158 DCSKMSKLDVEGNKLTVLSNNLI---ASWTMLTELIASKNLLNGMPE------TIGSLSR 208
               +  + ++  + T   +  +        +  L      +    +      +  +L  
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 209 LIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK 266
           L+   +     L    ++ S    +    +  +    +        S    L+   N   
Sbjct: 307 LMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT 366

Query: 267 EYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT-- 322
           +   + C    RL  L L  N L            +  L      L +L S   +     
Sbjct: 367 DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI 382
              +  L   L  N  + +             L    K L L    + +IP ++     +
Sbjct: 427 AESILVL--NLSSNMLTGSVFRC---------LPPKVKVLDLHNNRIMSIPKDVTHLQAL 475

Query: 383 TKLDLSRNSIQELPPE-LSSCASLQ 406
            +L+++ N ++ +P        SLQ
Sbjct: 476 QELNVASNQLKSVPDGVFDRLTSLQ 500

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 36/237 (15%), Positives = 75/237 (31%), Gaps = 18/237 (7%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDL-RNLPLLT 71
            LN+ N ++ +  +     + E            L    + +      KE L      + 
Sbjct: 280 YLNIYNLTITERIDREEFTYSETAL-------KSLMIEHVKNQVFLFSKEALYSVFAEMN 332

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           +  +S +    +             L+ + N       +   +   L       N LK  
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNF 392

Query: 130 PSSLGRCLNLSDFKASNNCITSLPEDLADC-----SKMSKLDVEGNKLTVLSNNLIASWT 184
                   N+S  +  +  + SL     D        +  L++  N LT      +    
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP-- 450

Query: 185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNN 240
            +  L    N +  +P+ +  L  L  L++  N++ S+P  +     SL   ++ +N
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 83.7 bits (207), Expect = 6e-18
 Identities = 45/269 (16%), Positives = 89/269 (33%), Gaps = 37/269 (13%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
           ++         + ++P+++ +N                 +L      +  +++       
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRN---------------AIELRFVLTKLRVIQKGAFSGFG 54

Query: 69  LLTVLNVSHNK-LSELPA-AIGELHMLKSLDVS-FNSIMKIPDEI-GSATALVKFDCSSN 124
            L  + +S N  L  + A     L  L  + +   N+++ I  E   +   L     S+ 
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 125 QLKELPSSLG------RCLNLSDFKASNNCITSLPEDLAD--CSKMSKLDVEGNKLTVLS 176
            +K LP            L++ D    N  I ++  +       +   L +  N +  + 
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQD----NINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N+      +    ++  N L  +P  +    S  + LD+ + RI S+PS        L  
Sbjct: 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230

Query: 235 FYMGNNALSALPAELGKLSKLGTLDLHSN 263
                  L  LP  L KL  L    L   
Sbjct: 231 RS--TYNLKKLPT-LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.0 bits (161), Expect = 4e-12
 Identities = 33/179 (18%), Positives = 64/179 (35%), Gaps = 12/179 (6%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM--PET 202
             + +T +P DL       +L     KL V+     + +  L ++  S+N +  +   + 
Sbjct: 17  QESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74

Query: 203 IGSLSRLIRLDL-HQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLD 259
             +L +L  + +   N +L I         +L    + N  +  LP        +   LD
Sbjct: 75  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 134

Query: 260 LHSN----QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG-NPLRTL 313
           +  N     ++            +L L+ N +  +       T L +L L+  N L  L
Sbjct: 135 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEEL 193

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 45/258 (17%), Positives = 83/258 (32%), Gaps = 50/258 (19%)

Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIR 211
              +  CS       + +K+T + ++L  +     EL      L  + +        L +
Sbjct: 3   HHRICHCSNRV-FLCQESKVTEIPSDLPRN---AIELRFVLTKLRVIQKGAFSGFGDLEK 58

Query: 212 LDLHQNRILSI--PSSISGCCSLAEFYMGN-NALSALPAE-LGKLSKLGTLDLHSNQLKE 267
           +++ QN +L +      S    L E  +   N L  +  E    L  L  L + +  +K 
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118

Query: 268 YCVEACQ--LRLSVLDLS-NNSLSGLPPEI--GKMTTLRKLLLTGNPLRTLRSSLVNGPT 322
                    L+  +LD+  N ++  +      G       L L  N ++ + +S  NG  
Sbjct: 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178

Query: 323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGE 381
             L +                                     +  NL  +P+++   A  
Sbjct: 179 --LDELNL---------------------------------SDNNNLEELPNDVFHGASG 203

Query: 382 ITKLDLSRNSIQELPPEL 399
              LD+SR  I  LP   
Sbjct: 204 PVILDISRTRIHSLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 34/255 (13%), Positives = 75/255 (29%), Gaps = 36/255 (14%)

Query: 47  LQKLILAH-NNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI 103
           L ++ +   NN+  +  +  +NLP L  L +S+  +  LP            LD+  N  
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-- 138

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSL--GRCLNLSDFKASNNCITSLPED-LADCS 160
                                 +  +  +   G          + N I  +         
Sbjct: 139 --------------------INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178

Query: 161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRI 219
                  + N L  L N++    +    L  S+  ++ +P     +L +L     +  + 
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKK 238

Query: 220 LSIPSSISGCCSLAEFYMGNN----ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL 275
           L     +    +L E  +       A +    ++ +L  +    +   ++        Q 
Sbjct: 239 LPTLEKLV---ALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQARGQR 295

Query: 276 RLSVLDLSNNSLSGL 290
                D  ++   G 
Sbjct: 296 SSLAEDNESSYSRGF 310

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 81.9 bits (203), Expect = 8e-18
 Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 21/214 (9%)

Query: 10  TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLP 68
              S++ S++ L  +P+ +                 D +KL L  N +  L       L 
Sbjct: 17  NKNSVDCSSKKLTAIPSNI---------------PADTKKLDLQSNKLSSLPSKAFHRLT 61

Query: 69  LLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEIGSA-TALVKFDCSSNQL 126
            L +L ++ NKL  LPA I  EL  L++L V+ N +  +P  +      L +     NQL
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121

Query: 127 KELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWT 184
           K LP  +   L  L+      N + SLP+ + D  + + +L +  N+L  +        T
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181

Query: 185 MLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
            L  L    N L  +PE    SL +L  L L +N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.6 bits (189), Expect = 6e-16
 Identities = 62/200 (31%), Positives = 88/200 (44%), Gaps = 9/200 (4%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITS 151
             S+D S   +  IP  I + T   K D  SN+L  LPS     L  L     ++N + +
Sbjct: 18  KNSVDCSSKKLTAIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75

Query: 152 LPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRL 209
           LP  +      +  L V  NKL  L   +      L EL   +N L  +P  +  SL++L
Sbjct: 76  LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135

Query: 210 IRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
             L L  N + S+P  +     SL E  + NN L  +P     KL++L TL L +NQLK 
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195

Query: 268 YCVEACQ--LRLSVLDLSNN 285
               A     +L +L L  N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 5/108 (4%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE- 267
           +LDL  N++ S+PS        L   Y+ +N L  LPA +  +L  L TL +  N+L+  
Sbjct: 41  KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 268 -YCVEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
              V    + L+ L L  N L  LPP +   +T L  L L  N L++L
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 18/190 (9%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE 271
           D    ++ +IPS+I       +  + +N LS+LP++   +L+KL  L L+ N+L+     
Sbjct: 22  DCSSKKLTAIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 272 AC-QL-RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 328
              +L  L  L +++N L  LP  +  ++  L +L L  N L++L   + +  T   L Y
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--LTY 137

Query: 329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDL 387
           L   L  N   E  +  + +    T L    KEL L    L  +P   ++   E+  L L
Sbjct: 138 L--SLGYN---ELQSLPKGVFDKLTSL----KELRLYNNQLKRVPEGAFDKLTELKTLKL 188

Query: 388 SRNSIQELPP 397
             N ++ +P 
Sbjct: 189 DNNQLKRVPE 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 79.7 bits (197), Expect = 4e-17
 Identities = 34/177 (19%), Positives = 64/177 (36%), Gaps = 9/177 (5%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             K  L   ++  L    + L  +   N  ++ +  L   +     LK L +S N I  +
Sbjct: 21  AVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDL 78

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
              +   T L +   + N+LK L  +      LS     NN +    + L     +  L 
Sbjct: 79  SP-LKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILS 134

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP 223
           +  NKL  +    +   + L  L    N +      +  L ++  +DL   + ++ P
Sbjct: 135 IRNNKLKSIVM--LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 55/245 (22%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           + I     I ++      L      N+    +++L +   EL  +++ +   ++I  +  
Sbjct: 1   ESIQRPTPINQV-FPDPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSL-- 56

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE 168
                                 + +    NL +   S+N I+ L   L D +K+ +L V 
Sbjct: 57  ----------------------AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVN 93

Query: 169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISG 228
            N+L  L+         L+ L    N L    +++  L  L  L +  N++ SI      
Sbjct: 94  RNRLKNLNGI---PSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSIVM---- 145

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
                               LG LSKL  LDLH N++          +++ +DL+     
Sbjct: 146 --------------------LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185

Query: 289 GLPPE 293
             P +
Sbjct: 186 NEPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.8 bits (179), Expect = 1e-14
 Identities = 45/208 (21%), Positives = 84/208 (40%), Gaps = 14/208 (6%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +Q     ++NI+ L   ++    L  L++SHN++S+L   + +L  L+ L V+ N +  +
Sbjct: 43  VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLS-PLKDLTKLEELSVNRNRLKNL 100

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +  L +    +N+L++   SL    NL      NN + S+   L   SK+  LD
Sbjct: 101 --NGIPSACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLD 156

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIPSS 225
           + GN++T      +     +  +  +       P      L     +     R +S P  
Sbjct: 157 LHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWIS-PYY 213

Query: 226 ISGCCSLAEFYMGNNALSALPAELGKLS 253
           IS   S  +  +       LP    ++S
Sbjct: 214 ISNGGSYVDGCVLWE----LPVYTDEVS 237

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 39/232 (16%), Positives = 75/232 (32%), Gaps = 49/232 (21%)

Query: 173 TVLSNNLI------ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           ++     I             +    K  +  +  +   LS +   +   + I S+ + +
Sbjct: 2   SIQRPTPINQVFPDPGLANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSNIQSL-AGM 59

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
               +L E ++ +N +S L   L  L+KL  L ++ N+LK          LS L L NN 
Sbjct: 60  QFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNE 117

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           L      +  +  L  L +  N L+++   L        L  L                 
Sbjct: 118 LRDTDS-LIHLKNLEILSIRNNKLKSI-VMLGF------LSKL----------------- 152

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                        + L L G  ++     +    ++  +DL+       P +
Sbjct: 153 -------------EVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPVK 190

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 50/268 (18%), Positives = 105/268 (39%), Gaps = 18/268 (6%)

Query: 63  DLRNLPLLTVLNVSHNKLSELPAAIGELHM----LKSLDVSFNSIMKIPDEIGSATALVK 118
           +L N+  +   N     LS L        +    L +++ ++NS ++I   +   T +  
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV-WHTTVWY 251

Query: 119 FDCSSNQLKELPSSLGRCLNLSDFKA------SNNCITSLPEDLADC-SKMSKLDVEGNK 171
           F  S+ +L+          + +  KA       ++        + +  S M+  +   + 
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 172 LTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSIS--- 227
             ++     +  +    L  S NLL        G L+ L  L L  N++  +        
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT 371

Query: 228 GCCSLAEFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 285
              SL +  +  N++S    +        L +L++ SN L +        R+ VLDL +N
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN 431

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
            +  +P ++ K+  L++L +  N L+++
Sbjct: 432 KIKSIPKQVVKLEALQELNVASNQLKSV 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.1 bits (195), Expect = 5e-16
 Identities = 63/389 (16%), Positives = 121/389 (31%), Gaps = 53/389 (13%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            ++ S   L  VP ++               +     L ++ N I +L   D+ +L  L 
Sbjct: 4   LVDRSKNGLIHVPKDL---------------SQKTTILNISQNYISELWTSDILSLSKLR 48

Query: 72  VLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP 130
           +L +SHN++  L          L+ LD+S N ++KI         L   D S N    LP
Sbjct: 49  ILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDALP 106

Query: 131 SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI 190
                                + ++  + S++  L +    L   S   IA   +   L+
Sbjct: 107 ---------------------ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL 145

Query: 191 ASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 250
                     E    L       LH     +          ++   + N  LS +   L 
Sbjct: 146 VLGETYGE-KEDPEGLQDFNTESLHIVFPTN--KEFHFILDVSVKTVANLELSNIKCVLE 202

Query: 251 KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
                  L + +       +    L L+ ++ + NS   +   +   TT+    ++   L
Sbjct: 203 DNKCSYFLSILAKLQTNPKLS--NLTLNNIETTWNSFIRILQLV-WHTTVWYFSISNVKL 259

Query: 311 RTLRSSLVNGPTPALLKYLR-SRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 369
           +          +   LK L   ++  +      +   ++ +     + T     +  M  
Sbjct: 260 QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 370 SAIPSEIWEAGEITKLDLSRNSIQELPPE 398
            +  S          LD S N + +   E
Sbjct: 320 PSKIS------PFLHLDFSNNLLTDTVFE 342

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.4 bits (180), Expect = 4e-14
 Identities = 52/330 (15%), Positives = 107/330 (32%), Gaps = 22/330 (6%)

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP 153
            +D S N ++ +P ++   T     + S N + EL +S +     L     S+N I  L 
Sbjct: 4   LVDRSKNGLIHVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 154 ED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET--IGSLSRLI 210
                   ++  LD+  NKL  +S         L  L  S N  + +P     G++S+L 
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK---- 266
            L L    +           ++++  +          +   L    T  LH         
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178

Query: 267 EYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            + ++     ++ L+LSN        +     ++   L T   L  L  + +     + +
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238

Query: 327 KYL----RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN---LSAIPSEIWEA 379
           + L     + +     S      +           + K LS+  +         S I+E 
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298

Query: 380 -GEITKLDLSRNSIQELP-PELSSCASLQV 407
              +   + + +  + +     S  +    
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.0 bits (179), Expect = 4e-14
 Identities = 64/393 (16%), Positives = 117/393 (29%), Gaps = 46/393 (11%)

Query: 47  LQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSI 103
           L+ L L+ N  + L       N+  L  L +S   L +     I  L++ K L V   + 
Sbjct: 92  LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSL-----------GRCLNLSDFKASNNCITSL 152
            +  ++                                       N+      N C   L
Sbjct: 152 GE-KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210

Query: 153 PEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNGMPE------ 201
                  +     ++  N +    N+ I        T +     S   L G  +      
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDY 270

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLD 259
           +  SL  L    +  +      S I     ++       +    +      K+S    LD
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD 330

Query: 260 LHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIG---KMTTLRKLLLTGNPLRTLR 314
             +N L +   E C     L  L L  N L  L        +M +L++L ++ N +    
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 315 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS 374
                      L  L   +  N  ++              L    K L L    + +IP 
Sbjct: 391 KKGDC-SWTKSLLSLN--MSSNILTDTIFRC---------LPPRIKVLDLHSNKIKSIPK 438

Query: 375 EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQ 406
           ++ +   + +L+++ N ++ +P        SLQ
Sbjct: 439 QVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.4 bits (175), Expect = 1e-13
 Identities = 43/208 (20%), Positives = 77/208 (37%), Gaps = 9/208 (4%)

Query: 66  NLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSS 123
           +L  L++  V  +      + I      +   + + +    +        +  +  D S+
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333

Query: 124 NQLKELPSS-LGRCLNLSDFKASNNCITSLPEDLADCSKMSK---LDVEGNKLTVLSNNL 179
           N L +      G    L       N +  L +     ++M     LD+  N ++      
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 180 IASW-TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
             SW   L  L  S N+L           R+  LDLH N+I SIP  +    +L E  + 
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVA 452

Query: 239 NNALSALPAE-LGKLSKLGTLDLHSNQL 265
           +N L ++P     +L+ L  + LH+N  
Sbjct: 453 SNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 39/175 (22%), Positives = 70/175 (40%), Gaps = 11/175 (6%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAIGELHMLKS---LDVSF 100
                L  ++N +     +   +L  L  L +  N+L EL         +KS   LD+S 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383

Query: 101 NSIMKIPDEIG--SATALVKFDCSSNQLKELPSSLGRCL--NLSDFKASNNCITSLPEDL 156
           NS+     +       +L+  + SSN L +      RCL   +      +N I S+P+ +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF---RCLPPRIKVLDLHSNKIKSIPKQV 440

Query: 157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
                + +L+V  N+L  + + +    T L ++    N  +     I  LSR + 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 495

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.9 bits (184), Expect = 3e-15
 Identities = 41/208 (19%), Positives = 65/208 (31%), Gaps = 20/208 (9%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCS-----KMSKLDVEGNKLTV 174
           +         P       +L+     N    +    LA+        +  L +       
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETI-----GSLSRLIRLDLHQNRILSIP----SS 225
            S   +  +  L+ L  S N   G    I          L  L L    + +      + 
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223

Query: 226 ISGCCSLAEFYMGNNALSALPAELG--KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDL 282
            +    L    + +N+L            S+L +L+L    LK+  V       LSVLDL
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKGLPAKLSVLDL 281

Query: 283 SNNSLSGLPPEIGKMTTLRKLLLTGNPL 310
           S N L   P    ++  +  L L GNP 
Sbjct: 282 SYNRLDRNPS-PDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 34/201 (16%), Positives = 62/201 (30%), Gaps = 21/201 (10%)

Query: 137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT--VLSNNLIASWTMLTELIASKN 194
           L +   +  +  +      L   S + +L +E  ++T       L A+   L  L     
Sbjct: 73  LTVRAARIPSRILFGALRVL-GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 195 LLNGMPETIGSLSRLI-----RLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP-- 246
                   +  L + +      L + Q   L+          +L+   + +N        
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 247 ---AELGKLSKLGTLDLHSNQLKEYCVEACQL-----RLSVLDLSNNSLSGLPPEIG--K 296
                  K   L  L L +  ++        L     +L  LDLS+NSL           
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 297 MTTLRKLLLTGNPLRTLRSSL 317
            + L  L L+   L+ +   L
Sbjct: 252 PSQLNSLNLSFTGLKQVPKGL 272

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.3 bits (146), Expect = 2e-10
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 21/192 (10%)

Query: 46  DLQKLILAHNNIEKLKEDLRNL-----PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVS 99
           DL  L L + +       L  L     P L VL+++           +     L +LD+S
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 100 FNSIMKIPDEIGSA-----TALVKFDCSSNQLKELPSSLGRCL----NLSDFKASNNCIT 150
            N  +     I +        L      +  ++               L     S+N + 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 151 SLPEDL--ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR 208
                      S+++ L++    L  +   L A    L+ L  S N L+  P     L +
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDRNPS-PDELPQ 297

Query: 209 LIRLDLHQNRIL 220
           +  L L  N  L
Sbjct: 298 VGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 48/304 (15%), Positives = 74/304 (24%), Gaps = 59/304 (19%)

Query: 119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
           F+C      EL    GR L     +           D+     + +L V   ++      
Sbjct: 28  FNCLGAADVELYGG-GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86

Query: 179 LIA---SWTMLTELIASKNLLNGM---PETIGSLSRLIRLDLHQNRILSIPSSISGCC-- 230
                   + L EL      + G    P    +   L  L+L      +  + ++     
Sbjct: 87  GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146

Query: 231 ---SLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQL------KEYCVEACQLRLSVL 280
               L    +          E       L TLDL  N                   L VL
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 281 DLSNNSLSGLPPEIGKMTTLRKLL----LTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 336
            L N  +         +   R  L    L+ N LR    +        L           
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL----------- 255

Query: 337 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 396
                                    L+L    L  +P  +     ++ LDLS N +   P
Sbjct: 256 -----------------------NSLNLSFTGLKQVPKGLPAK--LSVLDLSYNRLDRNP 290

Query: 397 PELS 400
               
Sbjct: 291 SPDE 294

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 73.9 bits (182), Expect = 5e-15
 Identities = 40/178 (22%), Positives = 82/178 (46%), Gaps = 10/178 (5%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153
              ++   S+     +     ++ +   +++ +K +   +    N+       N +  + 
Sbjct: 22  IKANLKKKSVTDAVTQNE-LNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS 79

Query: 154 --EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLI 210
             ++L +   ++ L + GN+L  L N +    T L EL+  +N L  +P+ +   L+ L 
Sbjct: 80  ALKELTN---LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
            L+L  N++ S+P  +     +L E  +  N L +LP  +  KL++L  L L+ NQLK
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 48/216 (22%), Positives = 93/216 (43%), Gaps = 25/216 (11%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
           ++ +S    +  P++                  +  K  L   ++         L  +  
Sbjct: 2   TITVSTPIKQIFPDDA---------------FAETIKANLKKKSVTDA-VTQNELNSIDQ 45

Query: 73  LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP--DEIGSATALVKFDCSSNQLKELP 130
           +  +++ +  +   I  L  ++ L +  N +  I    E+ + T L     + NQL+ LP
Sbjct: 46  IIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYL---ILTGNQLQSLP 101

Query: 131 SSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
           + +   L NL +     N + SLP+ + D  + ++ L++  N+L  L   +    T LTE
Sbjct: 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161

Query: 189 LIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
           L  S N L  +PE +   L++L  L L+QN++ S+P
Sbjct: 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 39/189 (20%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV 270
           + +L +  +    +      S+ +    N+ + ++   +  L  +  L L  N+L +   
Sbjct: 23  KANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDISA 80

Query: 271 EACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
                 L+ L L+ N L  LP  +  K+T L++L+L  N L++L   + +  T       
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------- 133

Query: 330 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 388
                                           L+L    L ++P  +++    +T+LDLS
Sbjct: 134 ----------------------------NLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165

Query: 389 RNSIQELPP 397
            N +Q LP 
Sbjct: 166 YNQLQSLPE 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 72.4 bits (178), Expect = 5e-15
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 4/127 (3%)

Query: 49  KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
           +L      IEK+   L  L     L +S N + ++ +++  +  L+ L +  N I KI +
Sbjct: 29  ELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKKIEN 87

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLD 166
               A  L +   S NQ+  L S + + +NL     SNN IT+  E   LA   K+  L 
Sbjct: 88  LDAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146

Query: 167 VEGNKLT 173
           + GN L 
Sbjct: 147 LAGNPLY 153

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 7/177 (3%)

Query: 162 MSKLDVEGNKLTVLS--NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRI 219
           M+K     + + +     +++A+     EL      +  M  T+ +L     L L  N I
Sbjct: 1   MAKATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI 60

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSV 279
             I SS+SG  +L    +G N +  +         L  L +  NQ+         + L V
Sbjct: 61  EKI-SSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119

Query: 280 LDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
           L +SNN ++      ++  +  L  LLL GNPL        N  T      +  RLP
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL--YNDYKENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 56  NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATA 115
             E+ K  +        L+     + ++ A +  L   K L +S N+I KI   +     
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMEN 71

Query: 116 LVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVL 175
           L       N +K++ +       L +   S N I SL   +     +  L         +
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLVNLRVLY--------M 122

Query: 176 SNNLIASWTMLTELIASKNL 195
           SNN I +W  + +L A   L
Sbjct: 123 SNNKITNWGEIDKLAALDKL 142

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 42/235 (17%), Positives = 90/235 (38%), Gaps = 28/235 (11%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-------SLGRCLNLSDFKAS 145
            +   V+   I +IP    S   L         L+ +PS       ++   + +S     
Sbjct: 13  EEDFRVTCKDIQRIPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNI-SRIYVSI---- 64

Query: 146 NNCITSLPEDL-ADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLNGMPET- 202
           +  +  L      + SK++ +++   + LT +  + +    +L  L      L   P+  
Sbjct: 65  DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLT 124

Query: 203 -IGSLSRLIRLDLHQN-RILSIPS-SISGCCS-LAEFYMGNNALSALPAELGKLSKLGTL 258
            + S      L++  N  + SIP  +  G C+      + NN  +++       +KL  +
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAV 184

Query: 259 DLHSNQ----LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP 309
            L+ N+    + +          S+LD+S  S++ LP +   +  L++L+     
Sbjct: 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG--LEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 37/231 (16%), Positives = 82/231 (35%), Gaps = 38/231 (16%)

Query: 46  DLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHN-KLSELPA-AIGELHMLKSLDVSFN- 101
             Q L L   ++  +      NLP ++ + VS +  L +L + +   L  +  +++    
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFK---ASNNCITSLPEDLA 157
           ++  I  +       L      +  LK  P           F      N  +TS+P +  
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151

Query: 158 D--CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
              C++   L +  N  T +                             + ++L  + L+
Sbjct: 152 QGLCNETLTLKLYNNGFTSVQGYAF------------------------NGTKLDAVYLN 187

Query: 216 QNRILSI--PSSISGCCS-LAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
           +N+ L++    +  G  S  +   +   +++ALP++ L  L +L   +  +
Sbjct: 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 27/185 (14%), Positives = 57/185 (30%), Gaps = 13/185 (7%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194
            C    DF+ +   I  +P           L +    L  + ++  ++   ++ +  S +
Sbjct: 9   ECHQEEDFRVTCKDIQRIPSLPPS---TQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 195 LLNGM--PETIGSLSRLIRLDLHQNRIL-SIPSSI-SGCCSLAEFYMGNNALSALPAE-- 248
           +        +  +LS++  +++   R L  I          L    + N  L   P    
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK 125

Query: 249 LGKLSKLGTLDLHSNQ----LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLL 304
           +        L++  N     +     +        L L NN  + +       T L  + 
Sbjct: 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY 185

Query: 305 LTGNP 309
           L  N 
Sbjct: 186 LNKNK 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 26/195 (13%), Positives = 64/195 (32%), Gaps = 7/195 (3%)

Query: 55  NNIEKLKEDLRNLP---LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
               K  +D  N+P       LN    + S       +++ L  + ++  ++  +   I 
Sbjct: 5   QTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL-TGIE 63

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGN 170
            A  +     ++       + +    NL   +     +TS    +L+  + ++ LD+  +
Sbjct: 64  YAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC 230
                    I +   +  +  S N        + +L  L  L++  + +      I    
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFP 181

Query: 231 SLAEFYMGNNALSAL 245
            L + Y  +  +   
Sbjct: 182 KLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 5/155 (3%)

Query: 138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN-LL 196
           +L+    +N  +T L   +     +  L +     T  +   I+  + L  L      + 
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVT 101

Query: 197 NGMPETIGSLSRLIRLDLHQNRI-LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKL 255
           +     +  L+ L  LD+  +    SI + I+    +    +  N        L  L +L
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

Query: 256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL 290
            +L++  + + +Y       +L+ L   + ++ G 
Sbjct: 162 KSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 5/132 (3%)

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           LT +  +   +  +   I     +  L ++     +  + ISG  +L    +    +++ 
Sbjct: 46  LTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSD 103

Query: 246 PAE-LGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGKMTTLRK 302
               L  L+ L  LD+  +   +  +       +++ +DLS N        +  +  L+ 
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 303 LLLTGNPLRTLR 314
           L +  + +   R
Sbjct: 164 LNIQFDGVHDYR 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 59/284 (20%), Positives = 97/284 (34%), Gaps = 85/284 (29%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL--KEDLRNLPLL 70
            L+ S + L +VP    ++                  L L+HNN+ +L  +     L  L
Sbjct: 22  ILSCSKQQLPNVP----QSLP-----------SYTALLDLSHNNLSRLRAEWTPTRLTNL 66

Query: 71  TVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKEL 129
             L +SHN L+ + + A   +  L+ LD+S N +  + + +        F      L+ L
Sbjct: 67  HSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL--------FS----DLQAL 114

Query: 130 PSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTE 188
                  L L      NN I  +  +   D +++ KL +  N+++     LI        
Sbjct: 115 -----EVLLL-----YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN---- 160

Query: 189 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE 248
                            L +L+ LDL  N++  +P                  L  LPA 
Sbjct: 161 ----------------KLPKLMLLDLSSNKLKKLPL---------------TDLQKLPA- 188

Query: 249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
                    L LH+N L   C   C+L           LS +  
Sbjct: 189 ----WVKNGLYLHNNPL--EC--DCKLYQLFSHWQYRQLSSVMD 224

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 6e-11
 Identities = 52/226 (23%), Positives = 81/226 (35%), Gaps = 49/226 (21%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYC 269
           L   + ++ ++P S+      A   + +N LS L AE    +L+ L +L L  N L    
Sbjct: 23  LSCSKQQLPNVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 270 VEA-CQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 326
            EA   +  L  LDLS+N L  L   +   +  L  LLL  N +  +  +         +
Sbjct: 81  SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-----M 135

Query: 327 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE----I 382
             L+                              +L L    +S  P E+ + G     +
Sbjct: 136 AQLQ------------------------------KLYLSQNQISRFPVELIKDGNKLPKL 165

Query: 383 TKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESCISGCYLYW 427
             LDLS N +++LP   L    +       L  N   C   C LY 
Sbjct: 166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC--DCKLYQ 209

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNN 178
           DC    L  +PS  G   +       +  + +L +      +K++ L+++ N+L  LS  
Sbjct: 20  DCQGKSLDSVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           +    T L  L  + N L  +P  +   L++L +L L  N++ S+PS +      L E  
Sbjct: 78  VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           +  N L ++PA    KL+ L TL L +NQL+
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 45/177 (25%), Positives = 67/177 (37%), Gaps = 26/177 (14%)

Query: 45  VDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSI 103
            D +KL L    +  L     R L  LT LN+ +N+L  L A +            F+ +
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV------------FDDL 82

Query: 104 MKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC-SK 161
                     T L     ++NQL  LP  +   L  L       N + SLP  + D  +K
Sbjct: 83  ----------TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132

Query: 162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           + +L +  N+L  +        T L  L  S N L  +P      L +L  + L  N
Sbjct: 133 LKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 51/302 (16%), Positives = 85/302 (28%), Gaps = 57/302 (18%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSL 96
           ++   L  + I     + +   L     +  + +S N +       L   I     L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 97  DVSFNSIMKIPDEIGS-ATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + S     ++ DEI      L++      +L          + LSD          L + 
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT--------VRLSDNAFGPTAQEPLIDF 117

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH 215
           L+  + +  L +  N L   +   IA    L EL  +K   N           L  +   
Sbjct: 118 LSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNA--------PPLRSIICG 167

Query: 216 QNRI-----LSIPSSISGCCSLAEFYMGNN------ALSALPAELGKLSKLGTLDLHSNQ 264
           +NR+          +      L    M  N          L   L    +L  LDL  N 
Sbjct: 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227

Query: 265 LKEYCVEA------CQLRLSVLDLSNNSL---------SGLPPEIGKMTTLRKLLLTGNP 309
                  A          L  L L++  L                 +   L+ L L  N 
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF--SKLENIGLQTLRLQYNE 285

Query: 310 LR 311
           + 
Sbjct: 286 IE 287

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 47/300 (15%), Positives = 83/300 (27%), Gaps = 71/300 (23%)

Query: 3   RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNI----- 57
             + + +       S+     V +E+ +      +     +   L  + L+ N       
Sbjct: 54  ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL--KCPKLHTVRLSDNAFGPTAQ 111

Query: 58  EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM---------LKSLDVSFNSI 103
           E L + L     L  L + +N L       +  A+ EL +         L+S+    N +
Sbjct: 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171

Query: 104 -----MKIPDEIGSATALVKFDCSSNQLKE------LPSSLGRCLNLSDFKASNNCIT-- 150
                 +      S   L       N ++       L   L  C  L      +N  T  
Sbjct: 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL 231

Query: 151 ---SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLS 207
              +L   L     + +L +    L+      +          A   L N          
Sbjct: 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD--------AFSKLEN---------I 274

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 267
            L  L L  N I      +    +L                  K+  L  L+L+ N+  E
Sbjct: 275 GLQTLRLQYNEI-----ELDAVRTLKT------------VIDEKMPDLLFLELNGNRFSE 317

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 63.5 bits (155), Expect = 8e-12
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVL 175
           DC    L E+P++L      + L       N I  +P    +   K+ ++D+  N+++ L
Sbjct: 17  DCRGKGLTEIPTNLPETITEIRLE-----QNTIKVIPPGAFSPYKKLRRIDLSNNQISEL 71

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLA 233
           + +       L  L+   N +  +P+++   L  L  L L+ N+I  +         +L 
Sbjct: 72  APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131

Query: 234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSN 263
              + +N L  +       L  + T+ L  N
Sbjct: 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 5/131 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
             + ++ L  N I+ +          L  +++S+N++SEL       L  L SL +  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLAD-C 159
           I ++P  +     +L     ++N++  L     + L NL+     +N + ++ +      
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 160 SKMSKLDVEGN 170
             +  + +  N
Sbjct: 152 RAIQTMHLAQN 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 61.2 bits (149), Expect = 5e-11
 Identities = 30/151 (19%), Positives = 59/151 (39%), Gaps = 29/151 (19%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           DCS+ +L ++P  +                   P+        ++L +  N+ TVL    
Sbjct: 17  DCSNQKLNKIPEHI-------------------PQYT------AELRLNNNEFTVLEATG 51

Query: 180 I-ASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFY 236
           I      L ++  S N +  + E      S +  + L  NR+ ++   +  G  SL    
Sbjct: 52  IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111

Query: 237 MGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           + +N ++ +  +    LS +  L L+ NQ+ 
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 6/109 (5%)

Query: 211 RLDLHQNRILSIPSS--ISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKE 267
            L L+ N    + ++        L +    NN ++ +        S +  + L SN+L+ 
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 268 YCVEACQ--LRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
              +  +    L  L L +N ++ +  +    ++++R L L  N + T+
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 24/132 (18%), Positives = 55/132 (41%), Gaps = 6/132 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
               +L L +N    L+     + LP L  +N S+NK++++   A      +  + ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPEDLADC 159
            +  +  ++     +L      SN++  + +     L ++      +N IT++     D 
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151

Query: 160 -SKMSKLDVEGN 170
              +S L++  N
Sbjct: 152 LHSLSTLNLLAN 163

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.4 bits (151), Expect = 5e-11
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAE-LGKLSKLGTLDLHSNQLKEYC 269
           L   ++  L     + G  +L E Y+     L  L    L  L +L  L +  + L+   
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--F 70

Query: 270 VEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           V         RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 46  DLQKLILAHNN-IEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS 102
           +L +L + +   ++ L   DLR L  L  L +  + L  +   A      L  L++SFN+
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 103 IMKIPDEIGSATALVKFDCSSNQL 126
           +  +  +     +L +   S N L
Sbjct: 92  LESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 29/156 (18%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L                  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE----------------- 48

Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAELGKL 252
                    +  L  L  L + ++ +  +          L+   +  NAL +L  +  + 
Sbjct: 49  ------LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102

Query: 253 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             L  L L  N L   C  +C LR            
Sbjct: 103 LSLQELVLSGNPLH--C--SCALRWLQRWEEEGLGG 134

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 2/105 (1%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            L +  N++T L   +  S   L EL    N L  +P  +  SL++L  LDL  N++  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           PS++      L E +M  N L+ LP  + +L+ L  L L  NQLK
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 38/148 (25%), Positives = 58/148 (39%), Gaps = 5/148 (3%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNN 178
           DC S +   +P+  G   N       +N IT L   + D    + +L +  N+L  L   
Sbjct: 25  DCRSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82

Query: 179 LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 237
           +  S T LT L    N L  +P  +   L  L  L +  N++  +P  I     L    +
Sbjct: 83  VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLAL 142

Query: 238 GNNALSALPAE-LGKLSKLGTLDLHSNQ 264
             N L ++P     +LS L    L  N 
Sbjct: 143 DQNQLKSIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            L LH N+I  +   +     +L E Y+G+N L ALP  +   L++L  LDL +NQL   
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV- 102

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
                 L          L  L +  N L+ LP  I ++T L  L L  N L+
Sbjct: 103 ------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 3/113 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDL-RNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
            + Q L L  N I KL+  +  +L  L  L +  N+L  LP  +   L  L  LD+  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           +  +P  +      L +     N+L ELP  + R  +L+      N + S+P 
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 7e-07
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 4/132 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            ++D        +P  I +           NQ+ +L   +   L NL +    +N + +L
Sbjct: 22  TTVDCRSKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIR 211
           P  + D  ++++ LD+  N+LTVL + +      L EL    N L  +P  I  L+ L  
Sbjct: 80  PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 212 LDLHQNRILSIP 223
           L L QN++ SIP
Sbjct: 140 LALDQNQLKSIP 151

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 17/98 (17%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE---DLRNLPLL 70
           L L +  L  +P  V   FD             L  L L  N +  L     D   L  L
Sbjct: 69  LYLGSNQLGALPVGV---FDSL---------TQLTVLDLGTNQLTVLPSAVFD--RLVHL 114

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD 108
             L +  NKL+ELP  I  L  L  L +  N +  IP 
Sbjct: 115 KELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH 152

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 57.3 bits (139), Expect = 7e-10
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLS 176
            CS+  LK LP  +      L L       N  T +P++L++   ++ +D+  N+++ LS
Sbjct: 16  RCSNKGLKVLPKGIPRDVTELYLDG-----NQFTLVPKELSNYKHLTLIDLSNNRISTLS 70

Query: 177 NNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-SGCCSLAE 234
           N   ++ T L  LI S N L  +P      L  L  L LH N I  +P    +   +L+ 
Sbjct: 71  NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130

Query: 235 FYMGNN 240
             +G N
Sbjct: 131 LAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 54.2 bits (131), Expect = 8e-09
 Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 211 RLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYC 269
            L L  N+   +P  +S    L    + NN +S L  +    +++L TL L  N+L+   
Sbjct: 35  ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94

Query: 270 VEA--CQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                    L +L L  N +S +P      ++ L  L +  NPL
Sbjct: 95  PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 5/96 (5%)

Query: 221 SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK--EYCVEACQLRLS 278
            +P  I     + E Y+  N  + +P EL     L  +DL +N++        +   +L 
Sbjct: 24  VLPKGIPR--DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81

Query: 279 VLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
            L LS N L  +PP     + +LR L L GN +  +
Sbjct: 82  TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVV 117

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNSI 103
            D+ +L L  N    + ++L N   LT++++S+N++S L       +  L +L +S+N +
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 104 MKIPDEI-GSATALVKFDCSSNQLKELP 130
             IP        +L       N +  +P
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDISVVP 118

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
            LD+E N L  L N +    T LT+L    N L  +P  +   L+ L  L+L  N++ S+
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 223 PSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           P+ +      L E  +  N L +LP  +  KL++L  L L+ NQLK
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 19/113 (16%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
            LDL  N + S+P+ +     SL + Y+G N L +LP  +  KL+ L  L+L +NQL+  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLR 311
                 L         +L  L L+ N L  LP  +  K+T L+ L L  N L+
Sbjct: 91  ------LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALVKFDCSSNQLKEL 129
           T +       + +P  I        LD+  NS+  +P+ +    T+L +     N+L+ L
Sbjct: 10  TTVECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 130 PSSLGRCL-NLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLT 187
           P+ +   L +L+    S N + SLP  + D  +++ +L +  N+L  L + +    T L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 188 ELIASKNLLNGMPETI-GSLSRLIRLDLHQN 217
           +L   +N L  +P+ +   L+ L  + LH N
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 94  KSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSL 152
            +++        +P  I + T     D  +N LK LP+ +   L +L+      N + SL
Sbjct: 10  TTVECYSQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67

Query: 153 PEDLADC-SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLI 210
           P  + +  + ++ L++  N+L  L N +    T L EL  + N L  +P+ +   L++L 
Sbjct: 68  PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 211 RLDLHQNRILSIP 223
            L L+QN++ S+P
Sbjct: 128 DLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 45  VDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPAAI-GELHMLKSLDVSFNS 102
                L L  N+++ L       L  LT L +  NKL  LP  +  +L  L  L++S N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 103 IMKIPDEI-GSATALVKFDCSSNQLKELPSSL-GRCLNLSDFKASNNCITSLPE 154
           +  +P+ +    T L +   ++NQL+ LP  +  +   L D +   N + S+P+
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 213 DLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK--EYC 269
           + +     S+P+ I          +  N+L +LP     +L+ L  L L  N+L+     
Sbjct: 13  ECYSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG 70

Query: 270 VEACQLRLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 313
           V      L+ L+LS N L  LP  +  K+T L++L L  N L++L
Sbjct: 71  VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 49/324 (15%), Positives = 95/324 (29%), Gaps = 60/324 (18%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKS 95
            Q + L    +     + +   LR  P L  LN+  N+L +     +   +      ++ 
Sbjct: 30  CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK 89

Query: 96  LDVSFNSI-----MKIPDEIGSATALVKFDCSSNQLKE------LPSSLGRCLNLSDFKA 144
           L +    +       +   + +   L +   S N L +          L     L   + 
Sbjct: 90  LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL 149

Query: 145 SNNCITS-----LPEDLADCSKMSKLDVEGNKL-----TVLSNNLIASWTMLTELIASKN 194
               +++     L   L       +L V  N +      VL   L  S   L  L     
Sbjct: 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 195 LLN-----GMPETIGSLSRLIRLDLHQNRILS------IPSSISGCCSLAEFYMGNNALS 243
            +       +   + S + L  L L  N++         P  +     L   ++    ++
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT 269

Query: 244 -----ALPAELGKLSKLGTLDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLS--- 288
                 L   L     L  L L  N+L +               +L  L + + S +   
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329

Query: 289 --GLPPEIGKMTTLRKLLLTGNPL 310
                  + +   L +L ++ N L
Sbjct: 330 CSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 58/282 (20%), Positives = 93/282 (32%), Gaps = 54/282 (19%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKS 95
           +QKL L +  +       L   LR LP L  L++S N L +     L   + +    L+ 
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           L + + S+            L     +    KE        L +S+   +   +  L + 
Sbjct: 147 LQLEYCSL----SAAS-CEPLASVLRAKPDFKE--------LTVSNNDINEAGVRVLCQG 193

Query: 156 LADC-SKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLNG------MPETI 203
           L D   ++  L +E   +T      L   + +    L EL    N L         P  +
Sbjct: 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASK-ASLRELALGSNKLGDVGMAELCPGLL 252

Query: 204 GSLSRLIRLDLHQNRI-----LSIPSSISGCCSLAEFYMGNNALS-----ALPAELGK-L 252
              SRL  L + +  I       +   +    SL E  +  N L       L   L +  
Sbjct: 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312

Query: 253 SKLGTLDLHSNQLKEYCVEA------CQLRLSVLDLSNNSLS 288
            +L +L + S      C             L  L +SNN L 
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 59/393 (15%), Positives = 124/393 (31%), Gaps = 87/393 (22%)

Query: 46  DLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDV 98
           D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L++
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 99  SFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD 158
             N +     ++G    +         L+     + + L+L +   +      L   L  
Sbjct: 64  RSNEL----GDVG-VHCV------LQGLQTPSCKI-QKLSLQNCCLTGAGCGVLSSTLRT 111

Query: 159 CSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLN-----GMPETIGSLSR 208
              + +L +  N L      +L   L+     L +L      L+      +   + +   
Sbjct: 112 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 171

Query: 209 LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAELGKLSKLGT 257
              L +  N I       +   +    C L    + +  ++      L   +   + L  
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 258 LDLHSNQLKEYCVEA-------CQLRLSVLDLSNNSLS-----GLPPEIGKMTTLRKLLL 305
           L L SN+L +  +            RL  L +    ++      L   +    +L++L L
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291

Query: 306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 365
            GN L                           D  A    E L+    +L    + L ++
Sbjct: 292 AGNEL--------------------------GDEGARLLCETLLEPGCQL----ESLWVK 321

Query: 366 GMNLS-----AIPSEIWEAGEITKLDLSRNSIQ 393
             + +        S + +   + +L +S N ++
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 42/263 (15%), Positives = 80/263 (30%), Gaps = 54/263 (20%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPLLTVLNVSHNKLSE------LPAAIGELHMLKS 95
           L+ L L    +       L   + +   L  L +  NKL +       P  +     L++
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260

Query: 96  LDVSFNSI-----MKIPDEIGSATALVKFDCSSNQL-----KELPSSLGRC------LNL 139
           L +    I       +   + +  +L +   + N+L     + L  +L         L +
Sbjct: 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320

Query: 140 SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTV-----LSNNLIASWTMLTELIASKN 194
                +  C +     LA    + +L +  N+L       L   L    ++L  L  +  
Sbjct: 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC 380

Query: 195 LLN-----GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAEL 249
            ++      +  T+ +   L  LDL  N +       +G   L E               
Sbjct: 381 DVSDSSCSSLAATLLANHSLRELDLSNNCL-----GDAGILQLVESVRQPG--------- 426

Query: 250 GKLSKLGTLDLHSNQLKEYCVEA 272
                L  L L+     E   + 
Sbjct: 427 ---CLLEQLVLYDIYWSEEMEDR 446

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 4   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-FP 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCL-NLSDFKASNNCITSLPE--DLADCSKMSKLDVE 168
               L     ++N++  +   L + L +L++   +NN +  L +   LA    ++ L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 169 GNKLTVLSN 177
            N +T   +
Sbjct: 122 RNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 7/111 (6%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 264
           +  R   LDL   +I  I +  +           +N +  L      L +L TL +++N+
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR 75

Query: 265 LK---EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
           +    E   +A    L+ L L+NNSL  L     +  + +L  L +  NP+
Sbjct: 76  ICRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 10/139 (7%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
           +   I    +   +  +  +LD+ G K+ V+ N L A+      +  S N +  + +   
Sbjct: 5   TAELIEQAAQ-YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFP 61

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L RL  L ++ NRI  I   +      L E  + NN+L  L     L  L  L  L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 262 SNQLKEYCVEACQLRLSVL 280
            N            RL V+
Sbjct: 122 RNP----VTNKKHYRLYVI 136

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 4/116 (3%)

Query: 42  WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
             AV  ++L L    I  ++     L     ++ S N++ +L      L  LK+L V+ N
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN 74

Query: 102 SIMKIPDEIGSA-TALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
            I +I + +  A   L +   ++N L EL     L    +L+      N +T+   
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 23/130 (17%), Positives = 50/130 (38%), Gaps = 4/130 (3%)

Query: 96  LDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED 155
           + ++   I +   +  +A    + D    ++  + +             S+N I  L + 
Sbjct: 2   VKLTAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DG 59

Query: 156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLD 213
                ++  L V  N++  +   L  +   LTELI + N L  + +   + SL  L  L 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119

Query: 214 LHQNRILSIP 223
           + +N + +  
Sbjct: 120 ILRNPVTNKK 129

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 208 RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK- 266
           + + LD  ++    +         L      N  L+++ A L KL+KL  L+L  N++  
Sbjct: 20  KELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG 78

Query: 267 --EYCVEACQLRLSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPL 310
             E   E C   L+ L+LS N +  L     + K+  L+ L L    +
Sbjct: 79  GLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
            +L+ L   +  +  +  +L  L  L  L +S N++S     + E    L  L++S N I
Sbjct: 42  EELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 104 MKIPD 108
             +  
Sbjct: 101 KDLST 105

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L  + +N  KL+        L  L+  +  L+ + A + +L+ LK L++S N +    + 
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N++K+L +   L +  NL      N  +T+L +
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D S +   +L         L      N  +TS+  +L   +K+ KL++  N+++     L
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVL 83

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N +  +     +  L  L  LDL    + ++ 
Sbjct: 84  AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN 129

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 187 TELIASKNLLNGMPET--IGSLSRLIRLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALS 243
           TEL+ + N L  +      G L  L++L+L +N++  I  +   G   + E  +G N + 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 244 ALPAEL-GKLSKLGTLDLHSNQLK 266
            +  ++   L +L TL+L+ NQ+ 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQIS 115

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 25/113 (22%), Positives = 42/113 (37%), Gaps = 20/113 (17%)

Query: 211 RLDLHQNRILSIPSS--ISGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKE 267
            L L+ N +  I S         L +  +  N L+ +        S +  L L  N++KE
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92

Query: 268 YCVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPL 310
                  +         +L  L+L +N +S + P     + +L  L L  NP 
Sbjct: 93  -------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 11/110 (10%)

Query: 120 DCSSNQLKELPSSL---GRCLNLSDFKASNNCITSLPED--LADCSKMSKLDVEGNKLTV 174
           DC+   LKE+P  +      L L+D     N +  +  D        + KL+++ N+LT 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLND-----NELGRISSDGLFGRLPHLVKLELKRNQLTG 68

Query: 175 LSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
           +  N     + + EL   +N +  +   +   L +L  L+L+ N+I  + 
Sbjct: 69  IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 45  VDLQKLILAHNNIEKLKED--LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFN 101
           +   +L+L  N + ++  D     LP L  L +  N+L+ +   A      ++ L +  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 102 SIMKIPDEI-GSATALVKFDCSSNQLKELP 130
            I +I +++      L   +   NQ+  + 
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISCVM 118

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 19/111 (17%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEY 268
           RL+L  N++ S+P  +      L +  +  N + +LP  +  KL+KL  L LH N+L+  
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS- 90

Query: 269 CVEACQL---------RLSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNP 309
                 L         +L  L L  N L  +P  I  ++T+L+K+ L  NP
Sbjct: 91  ------LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 23/104 (22%)

Query: 164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 222
           +L++E NKL  L + +    T LT+L  S+N +  +P+ +   L++L  L LH+N++ S+
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL 91

Query: 223 PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 266
           P+ +                        KL++L  L L +NQLK
Sbjct: 92  PNGV----------------------FDKLTQLKELALDTNQLK 113

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 10/109 (9%)

Query: 120 DCSSNQLKELPS---SLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKLTVL 175
            C+S  L  +P+   S    L L      +N + SLP  + D  ++++KL +  N++  L
Sbjct: 13  RCNSKGLTSVPTGIPSSATRLELE-----SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL 67

Query: 176 SNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 223
            + +    T LT L   +N L  +P  +   L++L  L L  N++ S+P
Sbjct: 68  PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVP 116

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 4/108 (3%)

Query: 50  LILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE 109
           L    +N  K++        L  L++ +  L  + + + +L  LK L++S N I    D 
Sbjct: 31  LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDM 89

Query: 110 IGSA-TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE 154
           +      L   + S N+LK++ +   L +   L      N  +T+L +
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 45  VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGE-LHMLKSLDVSFNSI 103
           V+L+ L L +  +  +  +L  LP L  L +S N++      + E L  L  L++S N +
Sbjct: 49  VNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 104 MKIPD 108
             I  
Sbjct: 108 KDIST 112

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
           D   +   ++       +NL      N  + S+  +L    K+ KL++  N++    + L
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDML 90

Query: 180 IASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQNRILSIP 223
                 LT L  S N L  +     +  L  L  LDL    + ++ 
Sbjct: 91  AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLN 136

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 28/127 (22%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG 204
             +    +    A+   +  L +    L  +SN                         + 
Sbjct: 34  CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-------------------------LP 68

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALP--AELGKLSKLGTLDLH 261
            L +L +L+L +NRI      ++    +L    +  N L  +     L KL  L +LDL 
Sbjct: 69  KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLF 128

Query: 262 SNQLKEY 268
           + ++   
Sbjct: 129 NCEVTNL 135

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 56/310 (18%), Positives = 100/310 (32%), Gaps = 71/310 (22%)

Query: 60  LKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHM-LKSLDVSFNSIMKIPDEIGSA 113
           ++E       +T L++S N L       L  A       + SL++S NS+        ++
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-----NS 68

Query: 114 TALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADC-SKMSKLDVEGNKL 172
             LV+       L  +P+++   LNLS    S      L + LA     ++ LD+  N  
Sbjct: 69  DELVQI------LAAIPANV-TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 173 T-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR--------LIRLDLHQNRI 219
           +                 +T L    N L    ++   L +        +  L+L  N +
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLG--IKSSDELIQILAAIPANVNSLNLRGNNL 179

Query: 220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA------- 272
                +   C  LA+F                 + + +LDL +N L              
Sbjct: 180 -----ASKNCAELAKFLASIP------------ASVTSLDLSANLLGLKSYAELAYIFSS 222

Query: 273 CQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK 327
               +  L+L  N L G     L      +  L+ + L  + +           +    K
Sbjct: 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV--------KNMSKEQCK 274

Query: 328 YLRSRLPENE 337
            L +  P  +
Sbjct: 275 ALGAAFPNIQ 284

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 54/288 (18%), Positives = 101/288 (35%), Gaps = 60/288 (20%)

Query: 47  LQKLILAHNNI-----EKLKEDLRNLPL-LTVLNVSHNKLSE-----LPAAIGELH-MLK 94
           +  L L+ NN+      +L +   N P  +T LN+S N L       L   +  +   + 
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83

Query: 95  SLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE 154
           SL++S N +        S+  LVK       L  +P ++   L+L     S+   +   +
Sbjct: 84  SLNLSGNFL-----SYKSSDELVKT------LAAIPFTI-TVLDLGWNDFSSKSSSEFKQ 131

Query: 155 DLADC-SKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR 208
             ++  + ++ L++ GN L       L   L A    +  L    N L    +    L++
Sbjct: 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA--SKNCAELAK 189

Query: 209 --------LIRLDLHQNRI-----LSIPSSISGC-CSLAEFYMGNNALS-----ALPAEL 249
                   +  LDL  N +       +    S     +    +  N L       L    
Sbjct: 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK 249

Query: 250 GKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLS 288
             L  L T+ L  + +K    E C+          ++ ++D +   + 
Sbjct: 250 DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 54/400 (13%), Positives = 112/400 (28%), Gaps = 131/400 (32%)

Query: 51  ILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI 110
           IL+    +   ++          +     + ++P +I     L   ++  + I+   D +
Sbjct: 21  ILSVF-EDAFVDNF---------DCKD--VQDMPKSI-----LSKEEI--DHIIMSKDAV 61

Query: 111 GSATALVKFDC----SSNQLKELPSSLGRCLN------LSDFKASNNCITSLPEDL---- 156
                L  F          +++    +   L       +S  K       S+   +    
Sbjct: 62  SGTLRL--FWTLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQ 115

Query: 157 -----ADCSKMSKLDVE-GNKLTVLSNNLIASWTMLTELIASKNL-LNGMP--------- 200
                 D    +K +V        L          L EL  +KN+ ++G+          
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 201 ETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAE--FYMGNNALSALPAELGKLSKLG 256
           +   S     ++D    +I  L++       C+  E    M    L  +       S   
Sbjct: 169 DVCLSYKVQCKMD---FKIFWLNL-----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 257 -TLDLHSNQLKEYCVEACQLR-----LSVLD-LSNNSLSGLPPEIGKMTTLR-KLLLTGN 308
             + L  + ++       + +     L VL  + N        +      L  K+LLT  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-------AKAWNAFNLSCKILLT-- 271

Query: 309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN 368
              T    + +     L     + +  +  S   T  E             K L L+ ++
Sbjct: 272 ---TRFKQVTD----FLSAATTTHISLDHHSMTLTPDE------------VKSLLLKYLD 312

Query: 369 LSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVK 408
                                   Q+LP E+ +    ++ 
Sbjct: 313 CR---------------------PQDLPREVLTTNPRRLS 331

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
           RL L+ N+I  +   +     +L + Y  +N L+A+P  +  KL++L  LDL+ N LK
Sbjct: 37  RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)

Query: 211 RLDLHQNRILSIPSSI-SGCCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLK 266
            L L+ N+I  +   +      L    + NN L+ LPA +  KL++L  L L+ NQLK
Sbjct: 34  VLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.8 bits (102), Expect = 7e-05
 Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 45/245 (18%)

Query: 137 LNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM---LTELIASK 193
           + +  +       + + + + +  +            +       SW     L+ ++ + 
Sbjct: 112 ITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM 171

Query: 194 NLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEF------------------ 235
            LLN +     +   + +      + L I S       + +                   
Sbjct: 172 PLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVE 231

Query: 236 -YMGNNALSALPAEL--GKLSKLGTLDLHSNQLKEYCVEA-----CQLRLSVLDLSNNSL 287
            Y  +  ++         +   L  L +   + +   VE         +L  +D+S   L
Sbjct: 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 288 SG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAS 342
           +      L   + K+  L+ + +  N L           +  + K L+  LP   D   S
Sbjct: 292 TDEGARLLLDHVDKIKHLKFINMKYNYL-----------SDEMKKELQKSLPMKIDVSDS 340

Query: 343 TTKED 347
              +D
Sbjct: 341 QEYDD 345

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 3e-04
 Identities = 25/249 (10%), Positives = 66/249 (26%), Gaps = 46/249 (18%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
              ++         +             +S  +  +L   +  + +L +L +   + + I
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                              LK L         +      ++ +  +    +D   + KL 
Sbjct: 188 GK------------KPRPNLKSL--------EIISGGLPDSVVEDILG--SDLPNLEKLV 225

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP--- 223
           +         +  +  +  L                      L  L +      ++    
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSK--------------DRFPNLKWLGIVDAEEQNVVVEM 271

Query: 224 -SSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRL 277
                    L    +    L+      L   + K+  L  +++  N L +   +  Q  L
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331

Query: 278 SV-LDLSNN 285
            + +D+S++
Sbjct: 332 PMKIDVSDS 340

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	429
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.68
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.81
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.69
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.6
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.1
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.02
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.89
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.85
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.85
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.8
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.98

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5e-41  Score=337.95  Aligned_cols=342  Identities=22%  Similarity=0.284  Sum_probs=270.5

Q ss_pred             CCcccccCCccEEEcCCCCCCc------------------cchhcc--CCCCCCEEECCCCCCC-CcchhhhCCCCCcEe
Q 014200           38 GDKWWEAVDLQKLILAHNNIEK------------------LKEDLR--NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSL   96 (429)
Q Consensus        38 ~~~~~~~~~L~~L~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L   96 (429)
                      +..+.++++|++|++++|.++.                  +|..+.  ++++|++|++++|.+. .+|..+.++++|++|
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  278 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI  278 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence            4457778888888888888887                  888777  8888888888888755 677788888888888


Q ss_pred             ecCCCc-Ccc--CCccccCC------CCcCEEecCCCCCCcCCc--cccCCCCCCEEEcCCCccc-cCCccccccCCCcE
Q 014200           97 DVSFNS-IMK--IPDEIGSA------TALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCIT-SLPEDLADCSKMSK  164 (429)
Q Consensus        97 ~l~~~~-i~~--l~~~~~~~------~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L~~  164 (429)
                      ++++|. ++.  +|..++.+      ++|++|++++|++..+|.  .+..+++|++|++++|.+. .+| .+..+++|+.
T Consensus       279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~  357 (636)
T 4eco_A          279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS  357 (636)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred             ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence            888887 764  67766665      888888888888888887  7888888888888888888 777 7788888888


Q ss_pred             EEccCCcccccChhhhhcccc-cceeecCCccCCcCCccccCCc--cCCeEeccCCcCcc-CCcccc-------ccCCCc
Q 014200          165 LDVEGNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLS--RLIRLDLHQNRILS-IPSSIS-------GCCSLA  233 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~-~~~~~~-------~~~~L~  233 (429)
                      |++++|.+..++.. +..++. |++|++++|.++.+|..+...+  +|+.|++++|.+.. .|..+.       .+++|+
T Consensus       358 L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          358 LNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             EECCSSEEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             EECCCCccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            88888888876655 777777 8888888888888887665544  78888888888874 455565       677888


Q ss_pred             EEEcCCCCCCccChh-hcCCCCCCEEECCCCcCccccchhhcc---------ccCEEEccCCCCCCCCcccc--CCCCCC
Q 014200          234 EFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLSGLPPEIG--KMTTLR  301 (429)
Q Consensus       234 ~L~l~~n~i~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~---------~L~~l~l~~n~l~~l~~~l~--~~~~L~  301 (429)
                      +|++++|.++.+|.. +..+++|+.|++++|.++.++...+..         +|++|++++|.++.+|..+.  .+++|+
T Consensus       437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~  516 (636)
T 4eco_A          437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV  516 (636)
T ss_dssp             EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCC
T ss_pred             EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcC
Confidence            888888888888765 456888888888888888776654431         68888888888888888776  888888


Q ss_pred             EEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccccccccc------CCccc-cCCh
Q 014200          302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE------GMNLS-AIPS  374 (429)
Q Consensus       302 ~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~------~~~i~-~~~~  374 (429)
                      .|++++|.++++|....                                    ..++|+.|+++      +|++. .+|.
T Consensus       517 ~L~Ls~N~l~~ip~~~~------------------------------------~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          517 GIDLSYNSFSKFPTQPL------------------------------------NSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             EEECCSSCCSSCCCGGG------------------------------------GCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             EEECCCCCCCCcChhhh------------------------------------cCCCCCEEECCCCcccccCcccccChH
Confidence            88888888876553322                                    12578888884      45555 7888


Q ss_pred             hhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccc
Q 014200          375 EIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCIS  421 (429)
Q Consensus       375 ~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~  421 (429)
                      .+..+++|++|+|++|+++.+|..+.  ++|++|+  +++|++++++
T Consensus       561 ~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~--Ls~N~l~~~~  603 (636)
T 4eco_A          561 GITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLD--IKDNPNISID  603 (636)
T ss_dssp             TGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEE--CCSCTTCEEE
T ss_pred             HHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEE--CcCCCCcccc
Confidence            88889999999999999977888765  7899999  9999888754

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.3e-41  Score=338.46  Aligned_cols=334  Identities=17%  Similarity=0.217  Sum_probs=294.1

Q ss_pred             CCCCCccchhccCCCCCCEEECCCCCCCC------------------cchhhh--CCCCCcEeecCCCcCc-cCCccccC
Q 014200           54 HNNIEKLKEDLRNLPLLTVLNVSHNKLSE------------------LPAAIG--ELHMLKSLDVSFNSIM-KIPDEIGS  112 (429)
Q Consensus        54 ~~~i~~l~~~~~~~~~L~~L~l~~~~i~~------------------~~~~l~--~l~~L~~L~l~~~~i~-~l~~~~~~  112 (429)
                      .|+++.+|..+.++++|++|++++|.++.                  +|+.+.  ++++|++|++++|.+. .+|..+++
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~  271 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA  271 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence            45777899999999999999999999997                  899888  9999999999999765 77989999


Q ss_pred             CCCcCEEecCCCC-CCc--CCccccCC------CCCCEEEcCCCccccCCc--cccccCCCcEEEccCCccc-ccChhhh
Q 014200          113 ATALVKFDCSSNQ-LKE--LPSSLGRC------LNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLT-VLSNNLI  180 (429)
Q Consensus       113 ~~~L~~L~l~~~~-l~~--~~~~~~~~------~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~-~~~~~~~  180 (429)
                      +++|++|++++|+ ++.  +|..+..+      ++|++|++++|.++.+|.  .+..+++|+.|++++|.+. .++  .+
T Consensus       272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~  349 (636)
T 4eco_A          272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AF  349 (636)
T ss_dssp             CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CC
T ss_pred             CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hh
Confidence            9999999999998 874  78777665      899999999999999998  8999999999999999998 676  58


Q ss_pred             hcccccceeecCCccCCcCCccccCCcc-CCeEeccCCcCccCCccccccC--CCcEEEcCCCCCCc-cChhhc------
Q 014200          181 ASWTMLTELIASKNLLNGMPETIGSLSR-LIRLDLHQNRILSIPSSISGCC--SLAEFYMGNNALSA-LPAELG------  250 (429)
Q Consensus       181 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~--~L~~L~l~~n~i~~-~~~~~~------  250 (429)
                      ..+++|++|++++|.++.+|..+..+++ |+.|++++|.++.+|..+...+  +|++|++++|.++. .|..+.      
T Consensus       350 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  429 (636)
T 4eco_A          350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP  429 (636)
T ss_dssp             EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred             CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence            8999999999999999999988999999 9999999999999998777655  89999999999985 466676      


Q ss_pred             -CCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCCCccccC--------CCCCCEEEccCCCCCCccccccC
Q 014200          251 -KLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPPEIGK--------MTTLRKLLLTGNPLRTLRSSLVN  319 (429)
Q Consensus       251 -~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l~~~l~~--------~~~L~~L~l~~~~i~~~~~~~~~  319 (429)
                       .+++|+.|++++|.++.++...+.  .+|++|++++|.++.+|.....        +++|+.|++++|.++.++...+.
T Consensus       430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence             778999999999999988877654  5699999999999998765332        23999999999999887755432


Q ss_pred             CCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCC------CCccc
Q 014200          320 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLS------RNSIQ  393 (429)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls------~n~i~  393 (429)
                      ..                                  .++|+.|++++|+++.+|..+..+++|+.|+++      +|++.
T Consensus       510 ~~----------------------------------l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~  555 (636)
T 4eco_A          510 TT----------------------------------LPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL  555 (636)
T ss_dssp             TT----------------------------------CTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred             cc----------------------------------CCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence            11                                  258899999999999999999999999999995      56777


Q ss_pred             c-CChhhcccccceeeccccCCCcccccccccc
Q 014200          394 E-LPPELSSCASLQVKFSDLVTNKESCISGCYL  425 (429)
Q Consensus       394 ~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~  425 (429)
                      + +|..+..+++|++|+  +++|+++.||+.+.
T Consensus       556 ~~~p~~l~~l~~L~~L~--Ls~N~l~~ip~~~~  586 (636)
T 4eco_A          556 REWPEGITLCPSLTQLQ--IGSNDIRKVNEKIT  586 (636)
T ss_dssp             CCCCTTGGGCSSCCEEE--CCSSCCCBCCSCCC
T ss_pred             ccChHHHhcCCCCCEEE--CCCCcCCccCHhHh
Confidence            6 999999999999999  99999999998754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.2e-40  Score=339.47  Aligned_cols=274  Identities=28%  Similarity=0.372  Sum_probs=185.9

Q ss_pred             cCCccEEEcCCCCCC-ccchhccC-CCCCCEEECCCCCCC-CcchhhhCCCCCcEeecCCCcCc-cCCcc-ccCCCCcCE
Q 014200           44 AVDLQKLILAHNNIE-KLKEDLRN-LPLLTVLNVSHNKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDE-IGSATALVK  118 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~-~l~~~~~~-~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~-~~~~~~L~~  118 (429)
                      +++|++|++++|.++ .+|..+.. +++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|.. +.++++|++
T Consensus       268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence            344444444444444 44444333 355666666666555 44555666666666666666554 45544 555666666


Q ss_pred             EecCCCCCC-cCCccccCCC-CCCEEEcCCCccc-cCCccccc--cCCCcEEEccCCcccccChhhhhcccccceeecCC
Q 014200          119 FDCSSNQLK-ELPSSLGRCL-NLSDFKASNNCIT-SLPEDLAD--CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASK  193 (429)
Q Consensus       119 L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~~-~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  193 (429)
                      |++++|++. .+|..+..++ +|++|++++|.+. .++..+..  +++|+.|++++|.+....+..+..+++|++|++++
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  427 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF  427 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred             EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence            666666555 4555555554 5666666666555 33444433  56677777777777655555577888888888888


Q ss_pred             ccCC-cCCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCccc-c
Q 014200          194 NLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY-C  269 (429)
Q Consensus       194 ~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~~-~  269 (429)
                      |.+. ..|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++. +
T Consensus       428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  507 (768)
T 3rgz_A          428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP  507 (768)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence            8886 56777888888888888888887 56777888888999999888888 5678888888999999999888743 3


Q ss_pred             chhh-ccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCC-Cccccc
Q 014200          270 VEAC-QLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLR-TLRSSL  317 (429)
Q Consensus       270 ~~~~-~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~-~~~~~~  317 (429)
                      .... ..+|++|++++|.+++ +|..+.++++|+.|++++|+++ .+|...
T Consensus       508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            3322 2358999999998885 7888888999999999998876 455443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.1e-39  Score=334.05  Aligned_cols=343  Identities=20%  Similarity=0.262  Sum_probs=288.8

Q ss_pred             CCcccccCCccEEEcCCCCCCc------------------cchhcc--CCCCCCEEECCCCCCC-CcchhhhCCCCCcEe
Q 014200           38 GDKWWEAVDLQKLILAHNNIEK------------------LKEDLR--NLPLLTVLNVSHNKLS-ELPAAIGELHMLKSL   96 (429)
Q Consensus        38 ~~~~~~~~~L~~L~l~~~~i~~------------------l~~~~~--~~~~L~~L~l~~~~i~-~~~~~l~~l~~L~~L   96 (429)
                      +..+.++++|++|++++|.++.                  +|..+.  ++++|+.|++++|.+. .+|..+.++++|++|
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L  520 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL  520 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEE
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEE
Confidence            4567789999999999999998                  888876  9999999999999854 778899999999999


Q ss_pred             ecCCCc-Ccc--CCccccC-------CCCcCEEecCCCCCCcCCc--cccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200           97 DVSFNS-IMK--IPDEIGS-------ATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (429)
Q Consensus        97 ~l~~~~-i~~--l~~~~~~-------~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~  164 (429)
                      ++++|. ++.  +|..++.       +++|++|++++|.+..+|.  .+..+++|++|++++|.++.+| .+..+++|+.
T Consensus       521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~  599 (876)
T 4ecn_A          521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTD  599 (876)
T ss_dssp             ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESE
T ss_pred             ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceE
Confidence            999997 774  6765554       4599999999999999988  8999999999999999999888 8889999999


Q ss_pred             EEccCCcccccChhhhhcccc-cceeecCCccCCcCCccccCCcc--CCeEeccCCcCccCCcc----cc--ccCCCcEE
Q 014200          165 LDVEGNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSLSR--LIRLDLHQNRILSIPSS----IS--GCCSLAEF  235 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~----~~--~~~~L~~L  235 (429)
                      |++++|.+..++.. +..+++ |++|++++|.++.+|..+...+.  |+.|++++|.+...++.    +.  .+++|+.|
T Consensus       600 L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L  678 (876)
T 4ecn_A          600 LKLDYNQIEEIPED-FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV  678 (876)
T ss_dssp             EECCSSCCSCCCTT-SCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred             EECcCCccccchHH-HhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence            99999999877655 788888 99999999999988877766654  99999999998754322    22  44589999


Q ss_pred             EcCCCCCCccChhh-cCCCCCCEEECCCCcCccccchhhcc---------ccCEEEccCCCCCCCCcccc--CCCCCCEE
Q 014200          236 YMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCVEACQL---------RLSVLDLSNNSLSGLPPEIG--KMTTLRKL  303 (429)
Q Consensus       236 ~l~~n~i~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~---------~L~~l~l~~n~l~~l~~~l~--~~~~L~~L  303 (429)
                      ++++|.++.+|..+ ..+++|+.|++++|.+..++...+..         +|++|++++|+++.+|..+.  .+++|+.|
T Consensus       679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L  758 (876)
T 4ecn_A          679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM  758 (876)
T ss_dssp             ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred             EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence            99999999998765 58899999999999999877765442         79999999999999998887  89999999


Q ss_pred             EccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccC------Cccc-cCChhh
Q 014200          304 LLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG------MNLS-AIPSEI  376 (429)
Q Consensus       304 ~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~------~~i~-~~~~~~  376 (429)
                      ++++|.++.+|....                                    ..++|+.|++++      |.+. .+|..+
T Consensus       759 ~Ls~N~L~~lp~~l~------------------------------------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l  802 (876)
T 4ecn_A          759 DVSYNCFSSFPTQPL------------------------------------NSSQLKAFGIRHQRDAEGNRILRQWPTGI  802 (876)
T ss_dssp             ECCSSCCSSCCCGGG------------------------------------GCTTCCEEECCCCBCTTCCBCCCCCCTTG
T ss_pred             EeCCCCCCccchhhh------------------------------------cCCCCCEEECCCCCCcccccccccChHHH
Confidence            999999977653322                                    125789999976      6655 789899


Q ss_pred             hccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccc
Q 014200          377 WEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISG  422 (429)
Q Consensus       377 ~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~  422 (429)
                      ..+++|+.|+|++|+++.+|..+.  ++|+.||  |++|++..+..
T Consensus       803 ~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~Ld--Ls~N~l~~i~~  844 (876)
T 4ecn_A          803 TTCPSLIQLQIGSNDIRKVDEKLT--PQLYILD--IADNPNISIDV  844 (876)
T ss_dssp             GGCSSCCEEECCSSCCCBCCSCCC--SSSCEEE--CCSCTTCEEEC
T ss_pred             hcCCCCCEEECCCCCCCccCHhhc--CCCCEEE--CCCCCCCccCh
Confidence            999999999999999977998765  6999999  99999988653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.3e-40  Score=335.99  Aligned_cols=385  Identities=26%  Similarity=0.333  Sum_probs=307.0

Q ss_pred             hHHHHHhhhcCeeeccCCCCc-cCChhhhhhhccc---------cCCCcccc-cCCccEEEcCCCCCC-ccchhccCCCC
Q 014200            2 DRILKAARTSGSLNLSNRSLR-DVPNEVYKNFDEA---------GEGDKWWE-AVDLQKLILAHNNIE-KLKEDLRNLPL   69 (429)
Q Consensus         2 ~~~~~~~~~l~~L~l~~~~l~-~~~~~~~~~~~~~---------~~~~~~~~-~~~L~~L~l~~~~i~-~l~~~~~~~~~   69 (429)
                      ..++..+++|++|++++|.+. .+|...+..++.+         ..+..+.+ +++|++|++++|.++ .+|..|.++++
T Consensus       240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~  319 (768)
T 3rgz_A          240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL  319 (768)
T ss_dssp             HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred             cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence            356677888889999888876 4443323333332         12333434 489999999999988 67778999999


Q ss_pred             CCEEECCCCCCC-Ccch-hhhCCCCCcEeecCCCcCc-cCCccccCCC-CcCEEecCCCCCC-cCCccccC--CCCCCEE
Q 014200           70 LTVLNVSHNKLS-ELPA-AIGELHMLKSLDVSFNSIM-KIPDEIGSAT-ALVKFDCSSNQLK-ELPSSLGR--CLNLSDF  142 (429)
Q Consensus        70 L~~L~l~~~~i~-~~~~-~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~-~L~~L~l~~~~l~-~~~~~~~~--~~~L~~L  142 (429)
                      |++|++++|.+. .+|. .+.++++|++|++++|.+. .+|..+..++ +|++|++++|.+. .++..+..  +++|++|
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L  399 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL  399 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence            999999999987 7776 4899999999999999887 7788888877 8999999999887 45555544  7789999


Q ss_pred             EcCCCccc-cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC-cCCccccCCccCCeEeccCCcCc
Q 014200          143 KASNNCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL  220 (429)
Q Consensus       143 ~l~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~  220 (429)
                      ++++|.++ .+|..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus       400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  479 (768)
T 3rgz_A          400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT  479 (768)
T ss_dssp             ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence            99999888 77888999999999999999988666666889999999999999987 57888888999999999999988


Q ss_pred             -cCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCccc-cchhhc-cccCEEEccCCCCCC-CCcccc
Q 014200          221 -SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY-CVEACQ-LRLSVLDLSNNSLSG-LPPEIG  295 (429)
Q Consensus       221 -~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~-~~L~~l~l~~n~l~~-l~~~l~  295 (429)
                       .+|..+..+++|++|++++|.++ .+|.+++.+++|+.|++++|.+.+. +..... .+|+.|++++|.+++ +|..+.
T Consensus       480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~  559 (768)
T 3rgz_A          480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF  559 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred             CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence             56888999999999999999988 6788899999999999999998843 333332 349999999998874 555443


Q ss_pred             C----------------------------------------------------------------------CCCCCEEEc
Q 014200          296 K----------------------------------------------------------------------MTTLRKLLL  305 (429)
Q Consensus       296 ~----------------------------------------------------------------------~~~L~~L~l  305 (429)
                      .                                                                      +++|+.|++
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL  639 (768)
T 3rgz_A          560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM  639 (768)
T ss_dssp             TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred             cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence            3                                                                      345556666


Q ss_pred             cCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc-cCChhhhccCCCcE
Q 014200          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITK  384 (429)
Q Consensus       306 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~  384 (429)
                      ++|.+++        ..|..                           ....+.|+.|++++|.++ .+|..+..+++|++
T Consensus       640 s~N~l~g--------~ip~~---------------------------l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~  684 (768)
T 3rgz_A          640 SYNMLSG--------YIPKE---------------------------IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI  684 (768)
T ss_dssp             CSSCCBS--------CCCGG---------------------------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cCCcccc--------cCCHH---------------------------HhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence            6665542        11111                           122357899999999998 88999999999999


Q ss_pred             EeCCCCcccc-CChhhcccccceeeccccCCCcccc-cccc
Q 014200          385 LDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC-ISGC  423 (429)
Q Consensus       385 L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~-i~~~  423 (429)
                      |||++|++++ +|+.++.+++|++||  +++|++++ ||..
T Consensus       685 LdLs~N~l~g~ip~~l~~l~~L~~L~--ls~N~l~g~iP~~  723 (768)
T 3rgz_A          685 LDLSSNKLDGRIPQAMSALTMLTEID--LSNNNLSGPIPEM  723 (768)
T ss_dssp             EECCSSCCEECCCGGGGGCCCCSEEE--CCSSEEEEECCSS
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEE--CcCCcccccCCCc
Confidence            9999999997 999999999999999  99999988 7653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-39  Score=333.34  Aligned_cols=328  Identities=18%  Similarity=0.255  Sum_probs=219.7

Q ss_pred             cchhccCCCCCCEEECCCCCCCC------------------cchhhh--CCCCCcEeecCCCcCc-cCCccccCCCCcCE
Q 014200           60 LKEDLRNLPLLTVLNVSHNKLSE------------------LPAAIG--ELHMLKSLDVSFNSIM-KIPDEIGSATALVK  118 (429)
Q Consensus        60 l~~~~~~~~~L~~L~l~~~~i~~------------------~~~~l~--~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~  118 (429)
                      +|..+.++++|+.|++++|.++.                  +|+.+.  ++++|++|++++|.+. .+|..+.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            55566666677777777666665                  666544  6667777777666543 55666666667777


Q ss_pred             EecCCCC-CCc--CCccccCC-------CCCCEEEcCCCccccCCc--cccccCCCcEEEccCCcccccChhhhhccccc
Q 014200          119 FDCSSNQ-LKE--LPSSLGRC-------LNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNNLIASWTML  186 (429)
Q Consensus       119 L~l~~~~-l~~--~~~~~~~~-------~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L  186 (429)
                      |++++|+ ++.  +|..+..+       ++|++|++++|.++.+|.  .+..+++|+.|++++|.+..++  .+..+++|
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L  597 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKL  597 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEE
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcc
Confidence            7776665 553  45433333       366777777766666666  6666666777777666666555  36666667


Q ss_pred             ceeecCCccCCcCCccccCCcc-CCeEeccCCcCccCCccccccCC--CcEEEcCCCCCCccCh----hhc--CCCCCCE
Q 014200          187 TELIASKNLLNGMPETIGSLSR-LIRLDLHQNRILSIPSSISGCCS--LAEFYMGNNALSALPA----ELG--KLSKLGT  257 (429)
Q Consensus       187 ~~L~l~~~~l~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--L~~L~l~~n~i~~~~~----~~~--~~~~L~~  257 (429)
                      +.|++++|.+..+|..+..+++ |+.|++++|.+..+|..+...+.  |+.|++++|.++..++    .+.  .+++|+.
T Consensus       598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             SEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             eEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            7777776666666666666666 67777777666666655554433  6667776666653322    122  2346667


Q ss_pred             EECCCCcCccccchhh--ccccCEEEccCCCCCCCCccccC--------CCCCCEEEccCCCCCCccccccCCCcHHHHH
Q 014200          258 LDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPEIGK--------MTTLRKLLLTGNPLRTLRSSLVNGPTPALLK  327 (429)
Q Consensus       258 L~l~~n~l~~~~~~~~--~~~L~~l~l~~n~l~~l~~~l~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~  327 (429)
                      |++++|.+..++...+  ..+|+.|++++|.++.+|..+..        +++|+.|++++|.++.++...+.        
T Consensus       678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~--------  749 (876)
T 4ecn_A          678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA--------  749 (876)
T ss_dssp             EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST--------
T ss_pred             EEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhh--------
Confidence            7777776666655543  23467777777666665554322        22666777777666655433321        


Q ss_pred             HHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCC------Ccccc-CChhhc
Q 014200          328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSR------NSIQE-LPPELS  400 (429)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~------n~i~~-~~~~l~  400 (429)
                                                ...++|+.|++++|.++.+|..+..+++|+.|+|++      |++.+ +|..+.
T Consensus       750 --------------------------~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~  803 (876)
T 4ecn_A          750 --------------------------TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT  803 (876)
T ss_dssp             --------------------------TTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred             --------------------------ccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence                                      123689999999999999999999999999999987      67776 999999


Q ss_pred             ccccceeeccccCCCcccccccccc
Q 014200          401 SCASLQVKFSDLVTNKESCISGCYL  425 (429)
Q Consensus       401 ~l~~L~~L~~~l~~n~i~~i~~~~~  425 (429)
                      .+++|++|+  +++|+++.||+.+.
T Consensus       804 ~L~~L~~L~--Ls~N~L~~Ip~~l~  826 (876)
T 4ecn_A          804 TCPSLIQLQ--IGSNDIRKVDEKLT  826 (876)
T ss_dssp             GCSSCCEEE--CCSSCCCBCCSCCC
T ss_pred             cCCCCCEEE--CCCCCCCccCHhhc
Confidence            999999999  99999988998754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.4e-39  Score=327.03  Aligned_cols=223  Identities=22%  Similarity=0.177  Sum_probs=127.8

Q ss_pred             ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC---CccccccCCC
Q 014200          156 LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI---PSSISGCCSL  232 (429)
Q Consensus       156 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~L  232 (429)
                      +..+++|+.|++++|.+..++.  + .++.|+++++++|...... .+..+++|+.|++++|.+...   +..+..+++|
T Consensus       303 l~~~~~L~~L~l~~n~l~~lp~--~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L  378 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQLKQFPT--L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL  378 (606)
T ss_dssp             CCTTCCCSEEEEESCCCSSCCC--C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCC
T ss_pred             ccccccCCEEEcccccCccccc--C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcc
Confidence            4445567777777777655552  3 5555666665555322111 233445555555555544432   3344444555


Q ss_pred             cEEEcCCCCCCccChhhcCCCCCCEEECCCCcCcccc-------------------------chhh--ccccCEEEccCC
Q 014200          233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC-------------------------VEAC--QLRLSVLDLSNN  285 (429)
Q Consensus       233 ~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~-------------------------~~~~--~~~L~~l~l~~n  285 (429)
                      ++|++++|.++.+|..+..+++|+.|++++|.+.+..                         +..+  ..+|++|++++|
T Consensus       379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  458 (606)
T 3vq2_A          379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN  458 (606)
T ss_dssp             CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             cEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC
Confidence            5555555544444444444444555555544444332                         2211  122455555555


Q ss_pred             CCCC--CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccccccc
Q 014200          286 SLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS  363 (429)
Q Consensus       286 ~l~~--l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~  363 (429)
                      .+++  +|..+..+++|+.|++++|.+++++...                                   +...++|++|+
T Consensus       459 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----------------------------------~~~l~~L~~L~  503 (606)
T 3vq2_A          459 SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV-----------------------------------FDTLHRLQLLN  503 (606)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT-----------------------------------TTTCTTCCEEE
T ss_pred             cCCCcchHHhhccCCCCCEEECCCCcCCccChhh-----------------------------------hcccccCCEEE
Confidence            4443  3444444455555555555444332222                                   12236888999


Q ss_pred             ccCCccccC-ChhhhccCCCcEEeCCCCccccCChhhcccc-cceeeccccCCCcccc
Q 014200          364 LEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELPPELSSCA-SLQVKFSDLVTNKESC  419 (429)
Q Consensus       364 l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~-~L~~L~~~l~~n~i~~  419 (429)
                      +++|+++.+ |..+..+++|++|++++|+++.+|..+..++ +|++|+  +++|++.|
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~--l~~N~~~c  559 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN--LTNNSVAC  559 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEE--CCSCCCCC
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEE--ccCCCccc
Confidence            999988855 7777888999999999999888888888887 599999  99999988

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.4e-38  Score=319.78  Aligned_cols=291  Identities=22%  Similarity=0.222  Sum_probs=143.2

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCCCCCc-chh
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSEL-PAA   86 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~i~~~-~~~   86 (429)
                      +.+++||+++|.++.+++..|..            +++|++|++++|.+..+ |..|+++++|++|++++|.+..+ |..
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  100 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSR------------LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA  100 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTT------------CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT
T ss_pred             CcCcEEEccCCccCcCChhHhcc------------CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh
Confidence            35677777777777776655554            34455555555555433 23445555555555555554433 334


Q ss_pred             hhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccC-CccccccCCC-
Q 014200           87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKM-  162 (429)
Q Consensus        87 l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L-  162 (429)
                      +.++++|++|++++|.+..+ +..+.++++|++|++++|.+..++ ..+..+++|++|++++|.++.+ +..+..+++| 
T Consensus       101 ~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          101 LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            45555555555555544443 233444555555555555444331 1222244455555544444422 2223333333 


Q ss_pred             ----------------------------------------------------------------------------cEEE
Q 014200          163 ----------------------------------------------------------------------------SKLD  166 (429)
Q Consensus       163 ----------------------------------------------------------------------------~~L~  166 (429)
                                                                                                  +.++
T Consensus       181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~  260 (606)
T 3t6q_A          181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN  260 (606)
T ss_dssp             SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred             eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence                                                                                        3444


Q ss_pred             ccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCC-c
Q 014200          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS-A  244 (429)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~-~  244 (429)
                      +++|.+..++...+..+++|+++++++|.++.+|..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.+. .
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  340 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE  340 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc
Confidence            44444444444445555566666666666665555555566666666666655543 334455555555555555444 3


Q ss_pred             cCh-hhcCCCCCCEEECCCCcCcccc--c--hhhccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCC
Q 014200          245 LPA-ELGKLSKLGTLDLHSNQLKEYC--V--EACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLR  311 (429)
Q Consensus       245 ~~~-~~~~~~~L~~L~l~~n~l~~~~--~--~~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~  311 (429)
                      ++. .+..+++|++|++++|.+.+..  .  .....+|++|++++|.++++ +..+..+++|+.|++++|.++
T Consensus       341 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  413 (606)
T 3t6q_A          341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK  413 (606)
T ss_dssp             CCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred             cchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence            322 2445555555555555554432  1  11112355555555554442 334444555555555555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.5e-39  Score=322.76  Aligned_cols=403  Identities=19%  Similarity=0.189  Sum_probs=255.0

Q ss_pred             HHHHHhhhcCeeeccCCCCccCChhhhhhhccc------------cCCCcccccCCccEEEcCCCCCCcc-chhccCCCC
Q 014200            3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEA------------GEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPL   69 (429)
Q Consensus         3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~   69 (429)
                      .+|.++++|++|++++|.+..+++..|..+..+            ..+..+.++++|++|++++|.++.+ +..+.++++
T Consensus        51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence            345667777777777777777766666554444            2244566777788888887777766 345777777


Q ss_pred             CCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcC--EEecCCCCCC------------------
Q 014200           70 LTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALV--KFDCSSNQLK------------------  127 (429)
Q Consensus        70 L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~--~L~l~~~~l~------------------  127 (429)
                      |++|++++|.+..++ ..+..+++|++|++++|.+..+ +..+..+++|+  .+++++|.+.                  
T Consensus       131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~  210 (606)
T 3t6q_A          131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFG  210 (606)
T ss_dssp             CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECT
T ss_pred             ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccC
Confidence            777777777777542 2344477777777777766654 33355555555  4555544443                  


Q ss_pred             ---------------------------------------------------------cCCc-cccCCCCCCEEEcCCCcc
Q 014200          128 ---------------------------------------------------------ELPS-SLGRCLNLSDFKASNNCI  149 (429)
Q Consensus       128 ---------------------------------------------------------~~~~-~~~~~~~L~~L~l~~~~~  149 (429)
                                                                               .++. .+..+++|++|++++|.+
T Consensus       211 ~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  290 (606)
T 3t6q_A          211 GTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL  290 (606)
T ss_dssp             TCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCC
T ss_pred             CchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCcc
Confidence                                                                     3322 255667777777777777


Q ss_pred             ccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC-cCCc-cccCCccCCeEeccCCcCccC---Cc
Q 014200          150 TSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPE-TIGSLSRLIRLDLHQNRILSI---PS  224 (429)
Q Consensus       150 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~-~~~~~~~L~~L~l~~~~~~~~---~~  224 (429)
                      +.+|..+..+++|++|++++|.+..+++..+..+++|+++++++|.+. .++. .+..+++|+.|++++|.+...   +.
T Consensus       291 ~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  370 (606)
T 3t6q_A          291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL  370 (606)
T ss_dssp             SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT
T ss_pred             CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcch
Confidence            777777777777777777777777666555777777777777777664 3433 366777777777777777644   45


Q ss_pred             cccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccch---hhccccCEEEccCCCCCCC-CccccCCCC
Q 014200          225 SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSLSGL-PPEIGKMTT  299 (429)
Q Consensus       225 ~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~L~~l~l~~n~l~~l-~~~l~~~~~  299 (429)
                      .+..+++|++|++++|.++.+ +..+..+++|+.|++++|.+......   ....+|++|++++|.+++. +..+.++++
T Consensus       371 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             hcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            667777777777777777654 55677777777777777777654322   1223477777777777663 556777777


Q ss_pred             CCEEEccCCCCCCccc---cccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc-cCChh
Q 014200          300 LRKLLLTGNPLRTLRS---SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSE  375 (429)
Q Consensus       300 L~~L~l~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~  375 (429)
                      |+.|++++|.+++...   ..+.+.         ..+....++...  ........+...++|++|++++|+++ ..|..
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l---------~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  519 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTL---------GRLEILVLSFCD--LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA  519 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGC---------TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCGGGGGG
T ss_pred             CCEEECCCCCCCccccccchhhccC---------CCccEEECCCCc--cCccChhhhccccCCCEEECCCCccCcCChhH
Confidence            7777777777754210   001000         001111111110  01111112233467777777777777 34566


Q ss_pred             hhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200          376 IWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       376 ~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      +..++.| +|++++|++++ .|+.+..+++|++|+  +++|+++|
T Consensus       520 l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~--l~~N~~~c  561 (606)
T 3t6q_A          520 LSHLKGI-YLNLASNHISIILPSLLPILSQQRTIN--LRQNPLDC  561 (606)
T ss_dssp             GTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEE--CTTCCEEC
T ss_pred             hCccccc-EEECcCCcccccCHhhcccCCCCCEEe--CCCCCccc
Confidence            6677777 77777777777 455567777788888  88888877

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-38  Score=313.30  Aligned_cols=355  Identities=23%  Similarity=0.242  Sum_probs=215.2

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCc-chhhhC
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~-~~~l~~   89 (429)
                      +++|+++++++.+|..++               +++++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|.+
T Consensus         3 ~~l~ls~n~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   67 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---------------QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF   67 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---------------TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT
T ss_pred             ceEecCCCCccccccccc---------------ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc
Confidence            467777777777776553               24666666666666554 3566666666666666666655 446666


Q ss_pred             CCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCc--CCccccCCCCCCEEEcCCCccccCCccccccCCC--cEE
Q 014200           90 LHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLPEDLADCSKM--SKL  165 (429)
Q Consensus        90 l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L--~~L  165 (429)
                      +++|++|++++|.++.+|..  .+++|++|++++|.+..  +|..+..+++|++|++++|.++.  ..+..+++|  +.|
T Consensus        68 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L  143 (520)
T 2z7x_B           68 NQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKV  143 (520)
T ss_dssp             CTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEE
T ss_pred             ccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEE
Confidence            66666666666666666554  56666666666666664  34566666666666666666553  234444555  566


Q ss_pred             EccCCcc--cccChhhhhc--------------------------c----------------------------------
Q 014200          166 DVEGNKL--TVLSNNLIAS--------------------------W----------------------------------  183 (429)
Q Consensus       166 ~l~~~~~--~~~~~~~~~~--------------------------~----------------------------------  183 (429)
                      ++++|.+  ....+..+..                          +                                  
T Consensus       144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~  223 (520)
T 2z7x_B          144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS  223 (520)
T ss_dssp             EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred             EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence            6555544  1111111111                          1                                  


Q ss_pred             -----------------------cccceeecCCccCC-cCCccc-----cCCccCCeEeccCCcCccCC-cc--------
Q 014200          184 -----------------------TMLTELIASKNLLN-GMPETI-----GSLSRLIRLDLHQNRILSIP-SS--------  225 (429)
Q Consensus       184 -----------------------~~L~~L~l~~~~l~-~~~~~~-----~~~~~L~~L~l~~~~~~~~~-~~--------  225 (429)
                                             ++|+++++++|.+. .+|..+     ..++.|+.+++++|.+ .+| ..        
T Consensus       224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~  302 (520)
T 2z7x_B          224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNM  302 (520)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTC
T ss_pred             hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccC
Confidence                                   24555555555554 455544     4555555555555444 222 11        


Q ss_pred             -----------------ccccCCCcEEEcCCCCCCc-cChhhcCCCCCCEEECCCCcCccccc----hhhccccCEEEcc
Q 014200          226 -----------------ISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCV----EACQLRLSVLDLS  283 (429)
Q Consensus       226 -----------------~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~L~~l~l~  283 (429)
                                       ...+++|++|++++|.++. +|..+..+++|+.|++++|.+++++.    .....+|++|+++
T Consensus       303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence                             1344555555555555553 34455555555555555555554322    1112235555555


Q ss_pred             CCCCCC-CCcc-ccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccccc
Q 014200          284 NNSLSG-LPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE  361 (429)
Q Consensus       284 ~n~l~~-l~~~-l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  361 (429)
                      +|.+++ +|.. +..+++|+.|++++|.+++..                                     ....+++|+.
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~-------------------------------------~~~l~~~L~~  425 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI-------------------------------------FRCLPPRIKV  425 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGG-------------------------------------GGSCCTTCCE
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcch-------------------------------------hhhhcccCCE
Confidence            555555 4432 445555555555555543210                                     0111258999


Q ss_pred             ccccCCccccCChhhhccCCCcEEeCCCCccccCChh-hcccccceeeccccCCCcccccccccccc
Q 014200          362 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESCISGCYLYW  427 (429)
Q Consensus       362 l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~i~~~~~~~  427 (429)
                      |++++|+++.+|..++.+++|++|++++|+++++|.. +..+++|++|+  +++|+++|  +|-+.|
T Consensus       426 L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~--l~~N~~~c--~c~~~~  488 (520)
T 2z7x_B          426 LDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC--SCPRID  488 (520)
T ss_dssp             EECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCBCC--CHHHHH
T ss_pred             EECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE--CcCCCCcc--cCCchH
Confidence            9999999999999999999999999999999998886 88999999999  99999999  555554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.8e-38  Score=317.57  Aligned_cols=389  Identities=18%  Similarity=0.154  Sum_probs=236.9

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCc-chhh
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAI   87 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~-~~~l   87 (429)
                      ++++|++++|.++.+++..|.            ++++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~------------~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~  100 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFS------------NFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF  100 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTT------------TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred             CcCEEECCCCCcCEeChhhcc------------CCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence            344444444444444443333            4566777777777666553 3566677777777777766655 4566


Q ss_pred             hCCCCCcEeecCCCcCccCC-ccccCCCCcCEEecCCCCCC--cCCccccCCCCCCEEEcCCCccccC-Ccccccc----
Q 014200           88 GELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLK--ELPSSLGRCLNLSDFKASNNCITSL-PEDLADC----  159 (429)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~----  159 (429)
                      .++++|++|++++|.+..++ ..++++++|++|++++|.+.  .+|..+..+++|++|++++|.++.+ +..+..+    
T Consensus       101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  180 (606)
T 3vq2_A          101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP  180 (606)
T ss_dssp             TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred             CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence            67777777777777666554 44666677777777776665  3566666667777777666665532 2222222    


Q ss_pred             -----------------------CCCcEEEccCCcccc------------------------------------------
Q 014200          160 -----------------------SKMSKLDVEGNKLTV------------------------------------------  174 (429)
Q Consensus       160 -----------------------~~L~~L~l~~~~~~~------------------------------------------  174 (429)
                                             .+|+.+++++|.+..                                          
T Consensus       181 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~  260 (606)
T 3vq2_A          181 QVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD  260 (606)
T ss_dssp             TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred             cccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence                                   234444444442210                                          


Q ss_pred             ----------------cChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCc--------------
Q 014200          175 ----------------LSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS--------------  224 (429)
Q Consensus       175 ----------------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------  224 (429)
                                      ..+. +..+++|+.++++++.+..+| .+..+++|+.|++++|.+..+|.              
T Consensus       261 l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n  338 (606)
T 3vq2_A          261 VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMN  338 (606)
T ss_dssp             SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESC
T ss_pred             ccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCC
Confidence                            0000 223344555555555555555 45555555555555555544442              


Q ss_pred             ------cccccCCCcEEEcCCCCCCcc---ChhhcCCCCCCEEECCCCcCccccchhhc-cccCEEEccCCCCCCCC--c
Q 014200          225 ------SISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLP--P  292 (429)
Q Consensus       225 ------~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~l~l~~n~l~~l~--~  292 (429)
                            .+..+++|++|++++|.++..   +..+..+++|++|++++|.+..++..... .+|++|++++|.+++.+  .
T Consensus       339 ~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  418 (606)
T 3vq2_A          339 KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS  418 (606)
T ss_dssp             SSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred             cCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChh
Confidence                  334556666666666666643   56667777777777777777665533222 34778888877777753  3


Q ss_pred             cccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhh-HHhhhhccccccccccccCCcccc
Q 014200          293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED-LITMATRLSVTSKELSLEGMNLSA  371 (429)
Q Consensus       293 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~i~~  371 (429)
                      .+.++++|+.|++++|.++......+.+..         .+....++..  ...+ .....+...++|+.|++++|.++.
T Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~  487 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLT---------SLNTLKMAGN--SFKDNTLSNVFANTTNLTFLDLSKCQLEQ  487 (606)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTC--EEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             hhhccccCCEEECcCCCCCccchhhhcCCC---------CCCEEECCCC--cCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence            577777888888888877654433222210         0111111111  1111 112223455789999999999985


Q ss_pred             C-ChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccccccccc
Q 014200          372 I-PSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESCISGCYL  425 (429)
Q Consensus       372 ~-~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~  425 (429)
                      + |..+..+++|++|++++|++++ .|..+..+++|++|+  +++|+++.+|+.+.
T Consensus       488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--l~~N~l~~~p~~~~  541 (606)
T 3vq2_A          488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD--CSFNRIETSKGILQ  541 (606)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE--CTTSCCCCEESCGG
T ss_pred             cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE--CCCCcCcccCHhHh
Confidence            4 6678899999999999999998 688999999999999  99999999998743

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.1e-37  Score=301.02  Aligned_cols=352  Identities=23%  Similarity=0.342  Sum_probs=302.5

Q ss_pred             HHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch
Q 014200            6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (429)
Q Consensus         6 ~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~   85 (429)
                      ..++.++.|+++++.+.++|.  +.            .+++|++|++++|.++.++. +.++++|++|++++|.+..++.
T Consensus        43 ~~l~~l~~L~l~~~~i~~l~~--~~------------~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~  107 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKSIDG--VE------------YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP  107 (466)
T ss_dssp             HHHHTCCEEECCSSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             hHhccccEEecCCCCCccCcc--hh------------hhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh
Confidence            346789999999999988874  33            26889999999999998886 8999999999999999998876


Q ss_pred             hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEE
Q 014200           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL  165 (429)
Q Consensus        86 ~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L  165 (429)
                       +.++++|++|++++|.+..++. +.++++|++|++++|.+..++ .+..+++|++|++. +.+..++ .+..+++|+.|
T Consensus       108 -~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L  182 (466)
T 1o6v_A          108 -LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLK-PLANLTTLERL  182 (466)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEE
T ss_pred             -hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCch-hhccCCCCCEE
Confidence             9999999999999999998865 889999999999999988875 48889999999996 4444443 37889999999


Q ss_pred             EccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc
Q 014200          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL  245 (429)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  245 (429)
                      ++++|.+..++.  +..+++|++|++++|.+...+. +..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+
T Consensus       183 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~  258 (466)
T 1o6v_A          183 DISSNKVSDISV--LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL  258 (466)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC
T ss_pred             ECcCCcCCCChh--hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccc
Confidence            999999887653  7888999999999999987754 677899999999999988774 578899999999999999987


Q ss_pred             ChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHH
Q 014200          246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL  325 (429)
Q Consensus       246 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~  325 (429)
                      ++ +..+++|+.|++++|.+.+++......+|++|++++|.+++++. +..+++|+.|++++|.+++++.          
T Consensus       259 ~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~----------  326 (466)
T 1o6v_A          259 AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP----------  326 (466)
T ss_dssp             GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG----------
T ss_pred             hh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh----------
Confidence            65 88999999999999999988775555669999999999999866 8899999999999999865432          


Q ss_pred             HHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccc
Q 014200          326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASL  405 (429)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L  405 (429)
                                                 ....++|+.|++++|.++.++ .+..+++|+.|++++|++++.+. +..+++|
T Consensus       327 ---------------------------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L  377 (466)
T 1o6v_A          327 ---------------------------VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRI  377 (466)
T ss_dssp             ---------------------------GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTCTTC
T ss_pred             ---------------------------hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcCCCC
Confidence                                       112368899999999999874 67889999999999999999554 8899999


Q ss_pred             eeeccccCCCccccccccc
Q 014200          406 QVKFSDLVTNKESCISGCY  424 (429)
Q Consensus       406 ~~L~~~l~~n~i~~i~~~~  424 (429)
                      ++|+  +++|+++++|.++
T Consensus       378 ~~L~--l~~n~~~~~p~~~  394 (466)
T 1o6v_A          378 TQLG--LNDQAWTNAPVNY  394 (466)
T ss_dssp             CEEE--CCCEEEECCCBCC
T ss_pred             CEEe--ccCCcccCCchhh
Confidence            9999  9999999987665

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.6e-38  Score=314.12  Aligned_cols=378  Identities=19%  Similarity=0.225  Sum_probs=272.5

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcch-h
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPA-A   86 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~~-~   86 (429)
                      +.+++|++++|+++.+++..|.            ++++|++|++++|.++.++ ..|.++++|++|++++|.+..++. .
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   93 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLR------------ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSW   93 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTS------------SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHH
T ss_pred             CCccEEECcCCccCccChhhhh------------cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHH
Confidence            4566777777776666554444            4778999999999888776 468889999999999998887765 5


Q ss_pred             hhCCCCCcEeecCCCcCcc--CCccccCCCCcCEEecCCCC-CCcCC-ccccCCCCCCEEEcCCCcccc-CCccccccCC
Q 014200           87 IGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCSSNQ-LKELP-SSLGRCLNLSDFKASNNCITS-LPEDLADCSK  161 (429)
Q Consensus        87 l~~l~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~~~~-l~~~~-~~~~~~~~L~~L~l~~~~~~~-~~~~l~~~~~  161 (429)
                      +.++++|++|++++|.+..  +|..++++++|++|++++|. +..++ ..+..+++|++|++++|.++. .|..+..+++
T Consensus        94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  173 (549)
T 2z81_A           94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD  173 (549)
T ss_dssp             HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred             hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence            8889999999999988874  45678888999999998887 55665 467888889999998888874 5666777777


Q ss_pred             CcEEEccCCcccccChhhhhcccccceeecCCccCCcCC---cc-cc---------------------------------
Q 014200          162 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP---ET-IG---------------------------------  204 (429)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~---~~-~~---------------------------------  204 (429)
                      |+.|++++|.+..++...+..+++|+++++++|.++..+   .. ..                                 
T Consensus       174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L  253 (549)
T 2z81_A          174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL  253 (549)
T ss_dssp             EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred             CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence            777777776665555544455666777766666654421   00 00                                 


Q ss_pred             ------------------------------------------------------CCccCCeEeccCCcCccCCccc-ccc
Q 014200          205 ------------------------------------------------------SLSRLIRLDLHQNRILSIPSSI-SGC  229 (429)
Q Consensus       205 ------------------------------------------------------~~~~L~~L~l~~~~~~~~~~~~-~~~  229 (429)
                                                                            ..++++.+++++|.+..+|..+ ..+
T Consensus       254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l  333 (549)
T 2z81_A          254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL  333 (549)
T ss_dssp             CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred             cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence                                                                  0134555556666655565544 467


Q ss_pred             CCCcEEEcCCCCCCcc-Ch---hhcCCCCCCEEECCCCcCccccc----hhhccccCEEEccCCCCCCCCccccCCCCCC
Q 014200          230 CSLAEFYMGNNALSAL-PA---ELGKLSKLGTLDLHSNQLKEYCV----EACQLRLSVLDLSNNSLSGLPPEIGKMTTLR  301 (429)
Q Consensus       230 ~~L~~L~l~~n~i~~~-~~---~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~  301 (429)
                      ++|++|++++|.++.. |.   .++.+++|+.|++++|.+++++.    .....+|++|++++|+++.+|..+..+++|+
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~  413 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR  413 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCC
T ss_pred             ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccccc
Confidence            8888888888888743 32   35678888888888888877653    2233458899999998888888888888899


Q ss_pred             EEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCC
Q 014200          302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE  381 (429)
Q Consensus       302 ~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~  381 (429)
                      .|++++|.++.++...+.            .+....++......      .....++|++|++++|+++.+|. ...+++
T Consensus       414 ~L~Ls~N~l~~l~~~~~~------------~L~~L~Ls~N~l~~------~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~  474 (549)
T 2z81_A          414 FLNLSSTGIRVVKTCIPQ------------TLEVLDVSNNNLDS------FSLFLPRLQELYISRNKLKTLPD-ASLFPV  474 (549)
T ss_dssp             EEECTTSCCSCCCTTSCT------------TCSEEECCSSCCSC------CCCCCTTCCEEECCSSCCSSCCC-GGGCTT
T ss_pred             EEECCCCCcccccchhcC------------CceEEECCCCChhh------hcccCChhcEEECCCCccCcCCC-cccCcc
Confidence            999999888776644321            01111111111100      11345789999999999999997 467999


Q ss_pred             CcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200          382 ITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       382 L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      |++|++++|++++ .|..+..+++|++|+  +++|+++|
T Consensus       475 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~--l~~N~~~~  511 (549)
T 2z81_A          475 LLVMKISRNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC  511 (549)
T ss_dssp             CCEEECCSSCCCCCCTTGGGGCTTCCEEE--CCSSCBCC
T ss_pred             CCEEecCCCccCCcCHHHHhcCcccCEEE--ecCCCccC
Confidence            9999999999999 556689999999999  99999998

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=316.04  Aligned_cols=386  Identities=20%  Similarity=0.221  Sum_probs=257.6

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcc-hh
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AA   86 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~-~~   86 (429)
                      +.++.|++++|+++.+++..|..            +++|++|++++|.++.++. .|+++++|++|++++|.++.++ .+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTT------------CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             ccccEEEccCCccCccChhHhhC------------CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhh
Confidence            46788888888888887766654            6678888888887776653 5777888888888888777664 47


Q ss_pred             hhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCc--CCccccCCCCCCEEEcCCCccccC-CccccccCCC
Q 014200           87 IGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKM  162 (429)
Q Consensus        87 l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L  162 (429)
                      |.++++|++|++++|.+..++. .++++++|++|++++|.+..  +|..+..+++|++|++++|.++.+ +..+..+.+|
T Consensus        96 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             hcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            7778888888888887776655 47777888888888877774  567777778888888887777644 2345555555


Q ss_pred             ----cEEEccCCcccccChh------------------------------------------------------------
Q 014200          163 ----SKLDVEGNKLTVLSNN------------------------------------------------------------  178 (429)
Q Consensus       163 ----~~L~l~~~~~~~~~~~------------------------------------------------------------  178 (429)
                          +.+++++|.+..+++.                                                            
T Consensus       176 ~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~  255 (570)
T 2z63_A          176 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC  255 (570)
T ss_dssp             TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG
T ss_pred             chhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc
Confidence                5566655544433221                                                            


Q ss_pred             ---------------------hhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCcc------------
Q 014200          179 ---------------------LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS------------  225 (429)
Q Consensus       179 ---------------------~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------  225 (429)
                                           .+..+++|++++++++.++.+|..+..+ +|+.|++++|.+..+|..            
T Consensus       256 ~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~  334 (570)
T 2z63_A          256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTS  334 (570)
T ss_dssp             GSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEES
T ss_pred             ccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcC
Confidence                                 2334456666666666666666666555 666666666665544431            


Q ss_pred             --------ccccCCCcEEEcCCCCCCcc---ChhhcCCCCCCEEECCCCcCccccchhh-ccccCEEEccCCCCCCCC--
Q 014200          226 --------ISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEYCVEAC-QLRLSVLDLSNNSLSGLP--  291 (429)
Q Consensus       226 --------~~~~~~L~~L~l~~n~i~~~---~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~L~~l~l~~n~l~~l~--  291 (429)
                              ...+++|++|++++|.++..   +..+..+++|+.|++++|.+..++.... ..+|++|++++|.+++.+  
T Consensus       335 n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  414 (570)
T 2z63_A          335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF  414 (570)
T ss_dssp             CBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTS
T ss_pred             CccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccch
Confidence                    04566677777777776644   4566777777777777777766554322 234777888777777643  


Q ss_pred             ccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCcccc
Q 014200          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (429)
Q Consensus       292 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~  371 (429)
                      ..+.++++|+.|++++|.+.......+.+..         .+....++..... .......+..+++|+.|++++|+++.
T Consensus       415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~---------~L~~L~l~~n~l~-~~~~p~~~~~l~~L~~L~l~~n~l~~  484 (570)
T 2z63_A          415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLS---------SLEVLKMAGNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQ  484 (570)
T ss_dssp             CTTTTCTTCCEEECTTSCCEECCTTTTTTCT---------TCCEEECTTCEEG-GGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             hhhhcCCCCCEEeCcCCcccccchhhhhcCC---------cCcEEECcCCcCc-cccchhhhhcccCCCEEECCCCcccc
Confidence            3567777888888888777655433332211         1111111111100 00111223445789999999999995


Q ss_pred             C-ChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200          372 I-PSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       372 ~-~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      + |..+..+++|++|++++|++++ .|..+..+++|++|+  +++|+++|
T Consensus       485 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~N~~~~  532 (570)
T 2z63_A          485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC  532 (570)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--CCSSCBCC
T ss_pred             CChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEE--ecCCcccC
Confidence            5 7788889999999999999998 455688899999999  99999998

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3.9e-37  Score=306.19  Aligned_cols=359  Identities=22%  Similarity=0.248  Sum_probs=252.1

Q ss_pred             hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-ch
Q 014200            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PA   85 (429)
Q Consensus         8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~   85 (429)
                      +...+++|+++++++.+|..++               +++++|++++|.++.++. .|.++++|++|++++|.++.+ |.
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~---------------~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   94 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP---------------PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH   94 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC---------------TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT
T ss_pred             cCCCcEEEcCCCCCccCCCCCC---------------CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH
Confidence            4455789999999999998664               358888888888887764 688888888888888888866 55


Q ss_pred             hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCC--ccccCCCCCCEEEcCCCccccCCccccccCCC-
Q 014200           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPEDLADCSKM-  162 (429)
Q Consensus        86 ~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L-  162 (429)
                      +|.++++|++|++++|.++.+|..  .+++|++|++++|++..++  ..+..+++|++|++++|.++..  .+..+++| 
T Consensus        95 ~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~  170 (562)
T 3a79_B           95 VFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLH  170 (562)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSC
T ss_pred             HhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhce
Confidence            788888888888888888888776  7888888888888888654  6788888888888888877642  34445555 


Q ss_pred             -cEEEccCCcc--cccChhhhh--------------------------ccc-----------------------------
Q 014200          163 -SKLDVEGNKL--TVLSNNLIA--------------------------SWT-----------------------------  184 (429)
Q Consensus       163 -~~L~l~~~~~--~~~~~~~~~--------------------------~~~-----------------------------  184 (429)
                       +.+++++|.+  ....+..+.                          .++                             
T Consensus       171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~  250 (562)
T 3a79_B          171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT  250 (562)
T ss_dssp             EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred             eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence             7777777765  222111111                          122                             


Q ss_pred             --------------------------ccceeecCCccCC-cCCccc-----cCCc-------------------------
Q 014200          185 --------------------------MLTELIASKNLLN-GMPETI-----GSLS-------------------------  207 (429)
Q Consensus       185 --------------------------~L~~L~l~~~~l~-~~~~~~-----~~~~-------------------------  207 (429)
                                                +|+++++++|.+. .+|..+     ..++                         
T Consensus       251 L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~  330 (562)
T 3a79_B          251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE  330 (562)
T ss_dssp             CEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred             ceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence                                      4555555555554 344333     2222                         


Q ss_pred             -cCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCc-cChhhcCCCCCCEEECCCCcCccccch----hhccccCEEE
Q 014200          208 -RLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVE----ACQLRLSVLD  281 (429)
Q Consensus       208 -~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~L~~l~  281 (429)
                       +++.|++++|.+...+ ....+++|++|++++|.++. .|..+..+++|+.|++++|.+++++..    ....+|++|+
T Consensus       331 ~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  409 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD  409 (562)
T ss_dssp             CCCSEEEEESSCCCCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred             CcceEEEccCCCccccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence             2344444444433221 11556777777777777775 466677777777777777777765431    1223477777


Q ss_pred             ccCCCCCC-CCc-cccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccc
Q 014200          282 LSNNSLSG-LPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS  359 (429)
Q Consensus       282 l~~n~l~~-l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  359 (429)
                      +++|.+++ +|. .+..+++|+.|++++|.+++...                                     ...+++|
T Consensus       410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------------~~l~~~L  452 (562)
T 3a79_B          410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-------------------------------------RCLPPKV  452 (562)
T ss_dssp             CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG-------------------------------------SSCCTTC
T ss_pred             CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh-------------------------------------hhhcCcC
Confidence            77777776 554 36667777777777777642110                                     0111488


Q ss_pred             ccccccCCccccCChhhhccCCCcEEeCCCCccccCChh-hcccccceeeccccCCCcccccccccccc
Q 014200          360 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESCISGCYLYW  427 (429)
Q Consensus       360 ~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~i~~~~~~~  427 (429)
                      +.|++++|+++.+|..++.+++|++|++++|+++++|.. +..+++|++|+  +++|+++|  +|-+.|
T Consensus       453 ~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~--l~~N~~~c--~c~~~~  517 (562)
T 3a79_B          453 KVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW--LHDNPWDC--TCPGIR  517 (562)
T ss_dssp             SEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE--CCSCCBCC--CHHHHH
T ss_pred             CEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE--ecCCCcCC--CcchHH
Confidence            999999999999999999999999999999999998887 89999999999  99999999  554444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=9.6e-37  Score=304.28  Aligned_cols=386  Identities=20%  Similarity=0.234  Sum_probs=281.9

Q ss_pred             cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcc-hhhh
Q 014200           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELP-AAIG   88 (429)
Q Consensus        11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~   88 (429)
                      .+.+++++.+++++|..+.               +++++|++++|.++.++. .|.++++|++|++++|.++.++ .+|.
T Consensus         9 ~~~~~c~~~~l~~ip~~l~---------------~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~   73 (570)
T 2z63_A            9 NITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ   73 (570)
T ss_dssp             TTEEECCSSCCSSCCSSSC---------------SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT
T ss_pred             CcEEEeCCCCccccCCCcc---------------ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc
Confidence            4568999999999998663               359999999999998765 6999999999999999999775 4799


Q ss_pred             CCCCCcEeecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCcccc--CCccccccCCCcE
Q 014200           89 ELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSK  164 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~l~~~~~L~~  164 (429)
                      ++++|++|++++|.+..++ ..+.++++|++|++++|.+..++. .+..+++|++|++++|.+..  +|..+..+++|++
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~  153 (570)
T 2z63_A           74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH  153 (570)
T ss_dssp             TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred             CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence            9999999999999998775 568999999999999999998865 68899999999999999985  6889999999999


Q ss_pred             EEccCCcccccChhhhhccccc----ceeecCCccCCcCC----------------------------------------
Q 014200          165 LDVEGNKLTVLSNNLIASWTML----TELIASKNLLNGMP----------------------------------------  200 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~~l~~~~----------------------------------------  200 (429)
                      |++++|.+..++...+..+++|    ..+++++|.++.++                                        
T Consensus       154 L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~  233 (570)
T 2z63_A          154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV  233 (570)
T ss_dssp             EECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEE
T ss_pred             EeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeec
Confidence            9999999998877767777777    67777777654332                                        


Q ss_pred             ------------------------------------------ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcC
Q 014200          201 ------------------------------------------ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG  238 (429)
Q Consensus       201 ------------------------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  238 (429)
                                                                ..+..+++|+.+++++|.+..+|..+..+ +|++|+++
T Consensus       234 ~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~  312 (570)
T 2z63_A          234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELV  312 (570)
T ss_dssp             EEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEE
T ss_pred             cccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeec
Confidence                                                      22333466677777777766666666666 77777777


Q ss_pred             CCCCCccChhh--------------------cCCCCCCEEECCCCcCcccc---ch-hhccccCEEEccCCCCCCCCccc
Q 014200          239 NNALSALPAEL--------------------GKLSKLGTLDLHSNQLKEYC---VE-ACQLRLSVLDLSNNSLSGLPPEI  294 (429)
Q Consensus       239 ~n~i~~~~~~~--------------------~~~~~L~~L~l~~n~l~~~~---~~-~~~~~L~~l~l~~n~l~~l~~~l  294 (429)
                      +|.++.+|...                    ..+++|+.|++++|.++...   .. ....+|++|++++|.+++++..+
T Consensus       313 ~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  392 (570)
T 2z63_A          313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF  392 (570)
T ss_dssp             SCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEE
T ss_pred             cCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccc
Confidence            77666554320                    23455566666666555432   11 11233666666666666655556


Q ss_pred             cCCCCCCEEEccCCCCCCccc-cccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc--c
Q 014200          295 GKMTTLRKLLLTGNPLRTLRS-SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS--A  371 (429)
Q Consensus       295 ~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~--~  371 (429)
                      ..+++|+.|++++|.+...+. ..+.+.         ..+....++..  .........+...++|+.|++++|.++  .
T Consensus       393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l---------~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  461 (570)
T 2z63_A          393 LGLEQLEHLDFQHSNLKQMSEFSVFLSL---------RNLIYLDISHT--HTRVAFNGIFNGLSSLEVLKMAGNSFQENF  461 (570)
T ss_dssp             ETCTTCCEEECTTSEEESCTTSCTTTTC---------TTCCEEECTTS--CCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             cccCCCCEEEccCCccccccchhhhhcC---------CCCCEEeCcCC--cccccchhhhhcCCcCcEEECcCCcCcccc
Confidence            666666666666666654422 111110         00111111111  111111122344678999999999987  5


Q ss_pred             CChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccccccccc
Q 014200          372 IPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESCISGCYL  425 (429)
Q Consensus       372 ~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~  425 (429)
                      +|..+..+++|++|++++|++++ .|..+..+++|++|+  +++|+++++|+..+
T Consensus       462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~--l~~n~l~~~~~~~~  514 (570)
T 2z63_A          462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN--MASNQLKSVPDGIF  514 (570)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE--CCSSCCSCCCTTTT
T ss_pred             chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe--CCCCcCCCCCHHHh
Confidence            88888899999999999999998 588899999999999  99999999876543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-35  Score=302.32  Aligned_cols=401  Identities=22%  Similarity=0.217  Sum_probs=229.9

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccc------------cCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEEC
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEA------------GEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNV   75 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l   75 (429)
                      +++++|++++|.++.+++..|..+..+            ..++.+.++++|++|++++|.++.++. .|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            345555666555555555544442221            112223345666777776666666665 3666667777777


Q ss_pred             CCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCCcc---ccCCCCCCEEEcCCCccc
Q 014200           76 SHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPSS---LGRCLNLSDFKASNNCIT  150 (429)
Q Consensus        76 ~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~~L~~L~l~~~~~~  150 (429)
                      ++|.+..++ ..|.++++|++|++++|.+..+ +..+.++++|++|++++|.+..++..   ...+++|++|++++|.++
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  184 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK  184 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence            766666554 3566666777777766666544 33455666666666666666654332   223456666666666555


Q ss_pred             cCC-cccccc---------------------------CCCcEEEccCCcccccChhhhhcccc--cceeecCCccCCcC-
Q 014200          151 SLP-EDLADC---------------------------SKMSKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLNGM-  199 (429)
Q Consensus       151 ~~~-~~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~l~~~-  199 (429)
                      .++ ..+..+                           ++|+.|++++|.+....+..+..++.  |++|++++|.++.+ 
T Consensus       185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~  264 (680)
T 1ziw_A          185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG  264 (680)
T ss_dssp             CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred             ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence            322 112111                           33444444444444433333444433  56666666555443 


Q ss_pred             CccccCCccCCeEeccCCcCccC-Cc---------------------------------cccccCCCcEEEcCCCCCCcc
Q 014200          200 PETIGSLSRLIRLDLHQNRILSI-PS---------------------------------SISGCCSLAEFYMGNNALSAL  245 (429)
Q Consensus       200 ~~~~~~~~~L~~L~l~~~~~~~~-~~---------------------------------~~~~~~~L~~L~l~~n~i~~~  245 (429)
                      +..+..+++|+.|++++|.+..+ +.                                 .+..+++|++|++++|.++.+
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~  344 (680)
T 1ziw_A          265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI  344 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred             cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence            23455555666666665555432 22                                 344455556666666655544


Q ss_pred             -ChhhcCCCCCCEEECCCCcCc--cccchhh----ccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCC-cccc
Q 014200          246 -PAELGKLSKLGTLDLHSNQLK--EYCVEAC----QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRT-LRSS  316 (429)
Q Consensus       246 -~~~~~~~~~L~~L~l~~n~l~--~~~~~~~----~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~-~~~~  316 (429)
                       +..+..+++|+.|++++|.+.  .++...+    ..+|+.+++++|+++++ +..+..+++|+.|++++|.+.. ++..
T Consensus       345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  424 (680)
T 1ziw_A          345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ  424 (680)
T ss_dssp             CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred             ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence             334566666666666666432  2222111    13477777777777774 5567888888888888888763 3333


Q ss_pred             ccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc---cCChhhhccCCCcEEeCCCCccc
Q 014200          317 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQ  393 (429)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~---~~~~~~~~~~~L~~L~ls~n~i~  393 (429)
                      .+.+..         .+....++..  .........+..+++|+.|++++|.+.   .+|..+..+++|+.|++++|+++
T Consensus       425 ~~~~l~---------~L~~L~Ls~n--~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~  493 (680)
T 1ziw_A          425 EWRGLE---------NIFEIYLSYN--KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA  493 (680)
T ss_dssp             GGTTCT---------TCCEEECCSC--SEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCC
T ss_pred             cccCcc---------cccEEecCCC--CcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCC
Confidence            332211         0111111111  111111122334578889999988875   56788889999999999999999


Q ss_pred             cCC-hhhcccccceeeccccCCCccccccc
Q 014200          394 ELP-PELSSCASLQVKFSDLVTNKESCISG  422 (429)
Q Consensus       394 ~~~-~~l~~l~~L~~L~~~l~~n~i~~i~~  422 (429)
                      ++| ..+..+++|++|+  +++|+++.++.
T Consensus       494 ~i~~~~~~~l~~L~~L~--Ls~N~l~~~~~  521 (680)
T 1ziw_A          494 NINDDMLEGLEKLEILD--LQHNNLARLWK  521 (680)
T ss_dssp             CCCTTTTTTCTTCCEEE--CCSSCCGGGGS
T ss_pred             cCChhhhccccccCEEe--CCCCCccccch
Confidence            854 5688999999999  99999998654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.8e-36  Score=300.98  Aligned_cols=382  Identities=20%  Similarity=0.229  Sum_probs=297.6

Q ss_pred             hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcc-h
Q 014200            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-A   85 (429)
Q Consensus         8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~-~   85 (429)
                      |+.....|+++++++++|..++               +++++|++++|.++.++ ..|.++++|++|++++|.++.++ .
T Consensus         4 C~~~~~c~~~~~~l~~ip~~~~---------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            4 CDASGVCDGRSRSFTSIPSGLT---------------AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             ECTTSEEECTTSCCSSCCSCCC---------------TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             CCCCceEECCCCccccccccCC---------------CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            3445567889999999998764               35999999999999774 57999999999999999999775 5


Q ss_pred             hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCc--CCccccCCCCCCEEEcCCCc-cccCC-ccccccC
Q 014200           86 AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNC-ITSLP-EDLADCS  160 (429)
Q Consensus        86 ~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~-~~~~~-~~l~~~~  160 (429)
                      +|.++++|++|++++|.+..++.. ++++++|++|++++|.+..  .+..+..+++|++|++++|. +..++ ..+..++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            899999999999999999988765 8999999999999999984  46778999999999999997 55665 5788999


Q ss_pred             CCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc-cCCccCCeEeccCCcCccCC---cc-c---------
Q 014200          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP---SS-I---------  226 (429)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~---~~-~---------  226 (429)
                      +|++|++++|.+....+..+..+++|++++++.+....++..+ ..+++|+.|++++|.+...+   .. .         
T Consensus       149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L  228 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL  228 (549)
T ss_dssp             EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred             ccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccce
Confidence            9999999999998877777889999999999999887766543 56889999999998876531   00 0         


Q ss_pred             ------------------------------------------------------------------------------cc
Q 014200          227 ------------------------------------------------------------------------------SG  228 (429)
Q Consensus       227 ------------------------------------------------------------------------------~~  228 (429)
                                                                                                    ..
T Consensus       229 ~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~  308 (549)
T 2z81_A          229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL  308 (549)
T ss_dssp             EEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred             eccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhh
Confidence                                                                                          11


Q ss_pred             cCCCcEEEcCCCCCCccChhh-cCCCCCCEEECCCCcCccccc-----hhhccccCEEEccCCCCCCCC---ccccCCCC
Q 014200          229 CCSLAEFYMGNNALSALPAEL-GKLSKLGTLDLHSNQLKEYCV-----EACQLRLSVLDLSNNSLSGLP---PEIGKMTT  299 (429)
Q Consensus       229 ~~~L~~L~l~~n~i~~~~~~~-~~~~~L~~L~l~~n~l~~~~~-----~~~~~~L~~l~l~~n~l~~l~---~~l~~~~~  299 (429)
                      .++++.+++++|.++.+|..+ +.+++|+.|++++|.+.+..+     .....+|++|++++|++++++   ..+..+++
T Consensus       309 ~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             STTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT
T ss_pred             cccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC
Confidence            235666777777777777665 578999999999999886422     122345999999999998865   35888999


Q ss_pred             CCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhcc
Q 014200          300 LRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA  379 (429)
Q Consensus       300 L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~  379 (429)
                      |+.|++++|.++.++........          +....++......     .....+++|+.|++++|+++.++   ..+
T Consensus       389 L~~L~Ls~N~l~~lp~~~~~~~~----------L~~L~Ls~N~l~~-----l~~~~~~~L~~L~Ls~N~l~~~~---~~l  450 (549)
T 2z81_A          389 LTSLDISRNTFHPMPDSCQWPEK----------MRFLNLSSTGIRV-----VKTCIPQTLEVLDVSNNNLDSFS---LFL  450 (549)
T ss_dssp             CCEEECTTCCCCCCCSCCCCCTT----------CCEEECTTSCCSC-----CCTTSCTTCSEEECCSSCCSCCC---CCC
T ss_pred             CCEEECCCCCCccCChhhccccc----------ccEEECCCCCccc-----ccchhcCCceEEECCCCChhhhc---ccC
Confidence            99999999999887754321110          1111111111000     00112358899999999988765   478


Q ss_pred             CCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccccccc
Q 014200          380 GEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYL  425 (429)
Q Consensus       380 ~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~  425 (429)
                      ++|++|++++|+++.+|. ...+++|++|+  +++|+++++|+..+
T Consensus       451 ~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~--Ls~N~l~~~~~~~~  493 (549)
T 2z81_A          451 PRLQELYISRNKLKTLPD-ASLFPVLLVMK--ISRNQLKSVPDGIF  493 (549)
T ss_dssp             TTCCEEECCSSCCSSCCC-GGGCTTCCEEE--CCSSCCCCCCTTGG
T ss_pred             ChhcEEECCCCccCcCCC-cccCccCCEEe--cCCCccCCcCHHHH
Confidence            999999999999999987 57899999999  99999999877643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.4e-36  Score=288.86  Aligned_cols=355  Identities=19%  Similarity=0.234  Sum_probs=291.1

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCCCC-Cc-chhhh
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLS-EL-PAAIG   88 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~i~-~~-~~~l~   88 (429)
                      +.+++++++++.+|. .               .+++++|++++|.++.+ +..|.++++|++|++++|.+. .+ +..|.
T Consensus        13 ~~~~c~~~~l~~lp~-l---------------~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~   76 (455)
T 3v47_A           13 YNAICINRGLHQVPE-L---------------PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR   76 (455)
T ss_dssp             TEEECCSSCCSSCCC-C---------------CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT
T ss_pred             cccCcCCCCcccCCC-C---------------CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc
Confidence            468999999999987 3               24699999999999977 557999999999999999986 55 45899


Q ss_pred             CCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCc-CCcc--ccCCCCCCEEEcCCCccccC-Ccc-ccccCCC
Q 014200           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSL-PED-LADCSKM  162 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~-~~~~--~~~~~~L~~L~l~~~~~~~~-~~~-l~~~~~L  162 (429)
                      ++++|++|++++|.+..+ |..+.++++|++|++++|.+.. ++..  +..+++|++|++++|.+..+ |.. +..+++|
T Consensus        77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  156 (455)
T 3v47_A           77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF  156 (455)
T ss_dssp             TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred             ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence            999999999999999866 6779999999999999999884 3333  88899999999999999966 444 7899999


Q ss_pred             cEEEccCCcccccChhhhhcc--cccceeecCCccCCcCCcc---------ccCCccCCeEeccCCcCcc-CCccccc--
Q 014200          163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNGMPET---------IGSLSRLIRLDLHQNRILS-IPSSISG--  228 (429)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~---------~~~~~~L~~L~l~~~~~~~-~~~~~~~--  228 (429)
                      ++|++++|.+....+..+..+  ..++.++++++.+..++..         +..+++|+.|++++|.+.. .+..+..  
T Consensus       157 ~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~  236 (455)
T 3v47_A          157 HVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI  236 (455)
T ss_dssp             CEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHT
T ss_pred             cEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccc
Confidence            999999999988776666665  6899999999998776532         3356789999999999873 3444433  


Q ss_pred             -cCCCcEEEcCCCCCCcc-----------Chhhc--CCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCC-C
Q 014200          229 -CCSLAEFYMGNNALSAL-----------PAELG--KLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-P  291 (429)
Q Consensus       229 -~~~L~~L~l~~n~i~~~-----------~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l-~  291 (429)
                       .++++.+++++|.....           +..+.  ..++|+.+++++|.+.++.+..+.  .+|++|++++|.++++ +
T Consensus       237 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  316 (455)
T 3v47_A          237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD  316 (455)
T ss_dssp             TTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred             cccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence             38899999998854421           11122  346899999999999877554433  4599999999999985 5


Q ss_pred             ccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCcccc
Q 014200          292 PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA  371 (429)
Q Consensus       292 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~  371 (429)
                      ..+.++++|+.|++++|.+++++...+.+                                   .++|+.|++++|.++.
T Consensus       317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------------------l~~L~~L~Ls~N~l~~  361 (455)
T 3v47_A          317 NAFWGLTHLLKLNLSQNFLGSIDSRMFEN-----------------------------------LDKLEVLDLSYNHIRA  361 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECGGGGTT-----------------------------------CTTCCEEECCSSCCCE
T ss_pred             hHhcCcccCCEEECCCCccCCcChhHhcC-----------------------------------cccCCEEECCCCcccc
Confidence            67999999999999999997765443332                                   3589999999999996


Q ss_pred             C-ChhhhccCCCcEEeCCCCccccCCh-hhcccccceeeccccCCCcccc
Q 014200          372 I-PSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       372 ~-~~~~~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      + |..+..+++|++|++++|+++++|. .+..+++|++|+  +++|+++|
T Consensus       362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--l~~N~l~~  409 (455)
T 3v47_A          362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC  409 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--CCSSCBCC
T ss_pred             cChhhccccccccEEECCCCccccCCHhHhccCCcccEEE--ccCCCccc
Confidence            5 7788899999999999999999665 568999999999  99999999

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.2e-36  Score=311.87  Aligned_cols=402  Identities=22%  Similarity=0.217  Sum_probs=195.2

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccc-------------cCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEE
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEA-------------GEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLN   74 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~   74 (429)
                      +++++||+++|.++.+++..|..+..+             ..++.+.++++|++|++++|.+..+ |..|.++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            567777777777776665555543332             1133455566666666666666644 44566666666666


Q ss_pred             CCCCCCCC-cch--hhhCCCCCcEeecCCCcCccC--CccccCCCCcCEEecCCCCCCcC-CccccCC--CCCCEEEcCC
Q 014200           75 VSHNKLSE-LPA--AIGELHMLKSLDVSFNSIMKI--PDEIGSATALVKFDCSSNQLKEL-PSSLGRC--LNLSDFKASN  146 (429)
Q Consensus        75 l~~~~i~~-~~~--~l~~l~~L~~L~l~~~~i~~l--~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~--~~L~~L~l~~  146 (429)
                      +++|.+.. ++.  .+.++++|++|++++|.+..+  +..++++++|++|++++|.+..+ +..+..+  ++|+.|++++
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            66666553 233  256666666666666655543  23456666666666666555422 1222211  2222222222


Q ss_pred             Ccccc-CCcccccc------------------------------------------------------------------
Q 014200          147 NCITS-LPEDLADC------------------------------------------------------------------  159 (429)
Q Consensus       147 ~~~~~-~~~~l~~~------------------------------------------------------------------  159 (429)
                      |.+.. .+..+..+                                                                  
T Consensus       184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l  263 (844)
T 3j0a_A          184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL  263 (844)
T ss_dssp             SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred             CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence            22220 11111111                                                                  


Q ss_pred             --CCCcEEEccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEE
Q 014200          160 --SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEF  235 (429)
Q Consensus       160 --~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L  235 (429)
                        ++++.|++++|.+..+.+..+..+++|++|++++|.+..+ +..+..+++|+.|++++|.+..+ +..+..+++|++|
T Consensus       264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred             ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence              2344444444444433333344444455555555544433 23344445555555555554433 3344455555555


Q ss_pred             EcCCCCCCccC-hhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCcc---------------------
Q 014200          236 YMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE---------------------  293 (429)
Q Consensus       236 ~l~~n~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~---------------------  293 (429)
                      ++++|.++.++ ..+..+++|+.|++++|.++.++.   .++|+.+++++|+++.+|..                     
T Consensus       344 ~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~  420 (844)
T 3j0a_A          344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY  420 (844)
T ss_dssp             ECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHH
T ss_pred             ECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCcccccccccccceeecccCccccCchhh
Confidence            55555544442 234445555555555554443322   12233333333333332211                     


Q ss_pred             -ccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCCh---hhHHhhhhccccccccccccCCcc
Q 014200          294 -IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK---EDLITMATRLSVTSKELSLEGMNL  369 (429)
Q Consensus       294 -l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~L~~l~l~~~~i  369 (429)
                       +.++++|+.|++++|.++.++........        ..+....++......   .......+...++|+.|++++|++
T Consensus       421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  492 (844)
T 3j0a_A          421 FLLRVPHLQILILNQNRFSSCSGDQTPSEN--------PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL  492 (844)
T ss_dssp             HHTTCTTCCEEEEESCCCCCCCSSSSSCSC--------TTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred             hhhcCCccceeeCCCCcccccccccccccC--------CccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence             23455666666666665544322111100        001111111110000   000011233346778888888888


Q ss_pred             ccCChh-hhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccccc
Q 014200          370 SAIPSE-IWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCY  424 (429)
Q Consensus       370 ~~~~~~-~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~  424 (429)
                      +.++.. +..+++|+.|+|++|+++++|..... ++|+.|+  +++|+++++++..
T Consensus       493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~--Ls~N~l~~~~~~~  545 (844)
T 3j0a_A          493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILD--ISRNQLLAPNPDV  545 (844)
T ss_dssp             TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEE--EEEECCCCCCSCC
T ss_pred             cccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEE--CCCCcCCCCChhH
Confidence            765544 45778888888888888775544333 7788888  8888888755443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.1e-35  Score=299.35  Aligned_cols=289  Identities=20%  Similarity=0.311  Sum_probs=173.2

Q ss_pred             cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhhh
Q 014200           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIG   88 (429)
Q Consensus        11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~   88 (429)
                      -+.+|+++++++.+|..+..               ++++|++++|.++.++. .|.++++|++|++++|.+..+ |.++.
T Consensus         6 ~~~~~cs~~~L~~ip~~~~~---------------~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~   70 (680)
T 1ziw_A            6 HEVADCSHLKLTQVPDDLPT---------------NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQ   70 (680)
T ss_dssp             SSEEECCSSCCSSCCSCSCT---------------TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHH
T ss_pred             CCeeECCCCCccccccccCC---------------CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHh
Confidence            36799999999999986643               46777777777776654 467777777777777776655 44667


Q ss_pred             CCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccC-CccccccCCCcEE
Q 014200           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL  165 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L  165 (429)
                      ++++|++|++++|.+..+|+ .+.++++|++|++++|++..++ ..+..+++|++|++++|.+... +..+..+++|++|
T Consensus        71 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             cccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            77777777777777766665 3666777777777777766654 4566677777777777766643 3445666777777


Q ss_pred             EccCCcccccChhhhh--cccccceeecCCccCCcCC-ccccCC---------------------------ccCCeEecc
Q 014200          166 DVEGNKLTVLSNNLIA--SWTMLTELIASKNLLNGMP-ETIGSL---------------------------SRLIRLDLH  215 (429)
Q Consensus       166 ~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~-~~~~~~---------------------------~~L~~L~l~  215 (429)
                      ++++|.+..++...+.  .+++|++|++++|.++.++ ..+..+                           ++|+.|+++
T Consensus       151 ~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~  230 (680)
T 1ziw_A          151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS  230 (680)
T ss_dssp             ECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECT
T ss_pred             EccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEcc
Confidence            7777766665554333  3356777777766665432 222221                           345555565


Q ss_pred             CCcCccC-CccccccCC--CcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhh--ccccCEEEccCCCCC-
Q 014200          216 QNRILSI-PSSISGCCS--LAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLS-  288 (429)
Q Consensus       216 ~~~~~~~-~~~~~~~~~--L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~l~l~~n~l~-  288 (429)
                      +|.+... +..+..++.  |++|++++|.++.+ +..+..+++|++|++++|.+.++.+..+  ..+|+++++++|... 
T Consensus       231 ~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~  310 (680)
T 1ziw_A          231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ  310 (680)
T ss_dssp             TSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC
T ss_pred             CCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc
Confidence            5555533 344544433  66666666666644 3456666666666666666655433221  123555555544222 


Q ss_pred             -----CCCc----cccCCCCCCEEEccCCCCCCcc
Q 014200          289 -----GLPP----EIGKMTTLRKLLLTGNPLRTLR  314 (429)
Q Consensus       289 -----~l~~----~l~~~~~L~~L~l~~~~i~~~~  314 (429)
                           .+|.    .+..+++|+.|++++|.+++++
T Consensus       311 ~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~  345 (680)
T 1ziw_A          311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK  345 (680)
T ss_dssp             ------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred             ccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence                 1221    3444555555555555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9.7e-35  Score=271.58  Aligned_cols=304  Identities=20%  Similarity=0.281  Sum_probs=182.9

Q ss_pred             ccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecC
Q 014200           43 EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (429)
Q Consensus        43 ~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~  122 (429)
                      .++++++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+.++++|++|+++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQ-GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN  118 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred             hcccccEEEEeCCccccch-hhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence            3556667777666666665 35666667777776666666654 666666777776666666553 35666666666666


Q ss_pred             CCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcc
Q 014200          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (429)
Q Consensus       123 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  202 (429)
                      +|.+..++. +..+++|++|++++|........+..+++|+.|++++|.+...+.  +..+++|+++++++|        
T Consensus       119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n--------  187 (347)
T 4fmz_A          119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN--------  187 (347)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS--------
T ss_pred             CCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC--------
Confidence            666665544 556666666666666443333335555666666666555544433  344444444444444        


Q ss_pred             ccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEc
Q 014200          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL  282 (429)
Q Consensus       203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l  282 (429)
                                     .+..++. +..+++|+.+++++|.++.++. +..+++|++|++++|.++.++......+|++|++
T Consensus       188 ---------------~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l  250 (347)
T 4fmz_A          188 ---------------QIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEI  250 (347)
T ss_dssp             ---------------CCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             ---------------ccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEEC
Confidence                           4444332 4445555555555555554433 4455555555555555555444333334556666


Q ss_pred             cCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccc
Q 014200          283 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL  362 (429)
Q Consensus       283 ~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l  362 (429)
                      ++|.++++ +.+..+++|+.|++++|.+++++.                                     ....++|+.|
T Consensus       251 ~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~-------------------------------------~~~l~~L~~L  292 (347)
T 4fmz_A          251 GTNQISDI-NAVKDLTKLKMLNVGSNQISDISV-------------------------------------LNNLSQLNSL  292 (347)
T ss_dssp             CSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG-------------------------------------GGGCTTCSEE
T ss_pred             CCCccCCC-hhHhcCCCcCEEEccCCccCCChh-------------------------------------hcCCCCCCEE
Confidence            66655554 345666677777777776654321                                     1112467777


Q ss_pred             cccCCcccc-CChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccc
Q 014200          363 SLEGMNLSA-IPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKES  418 (429)
Q Consensus       363 ~l~~~~i~~-~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~  418 (429)
                      ++++|.++. .+..+..+++|++|++++|++++++. ++.+++|++|+  +++|+|+
T Consensus       293 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~--l~~N~i~  346 (347)
T 4fmz_A          293 FLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSAD--FANQVIK  346 (347)
T ss_dssp             ECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEES--SSCC---
T ss_pred             ECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceee--hhhhccc
Confidence            777777773 45667789999999999999998655 78899999999  9999886

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.2e-35  Score=282.38  Aligned_cols=349  Identities=25%  Similarity=0.370  Sum_probs=296.2

Q ss_pred             HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (429)
Q Consensus         5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~   84 (429)
                      +..+++|++|++++|.++++++  +..            +++|++|++++|.+..++. +.++++|++|++++|.++.++
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~------------l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~  128 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITP--LKN------------LTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID  128 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTT------------CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             hhhhcCCCEEECCCCccCCchh--hhc------------cccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh
Confidence            5678999999999999998876  443            7889999999999998886 999999999999999999886


Q ss_pred             hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (429)
Q Consensus        85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~  164 (429)
                      . +..+++|++|++++|.+..++. +..+++|++++++ +.+..++ .+..+++|++|++++|.+..++ .+..+++|+.
T Consensus       129 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~-~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~  203 (466)
T 1o6v_A          129 P-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDLK-PLANLTTLERLDISSNKVSDIS-VLAKLTNLES  203 (466)
T ss_dssp             G-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEE-ESCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSE
T ss_pred             H-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecC-CcccCch-hhccCCCCCEEECcCCcCCCCh-hhccCCCCCE
Confidence            5 8999999999999999888764 8899999999996 4555553 3889999999999999988774 4788999999


Q ss_pred             EEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCc
Q 014200          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA  244 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~  244 (429)
                      |++++|.+....+  +..+++|++|++++|.++.++ .+..+++|+.|++++|.+...+. +..+++|++|++++|.++.
T Consensus       204 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~  279 (466)
T 1o6v_A          204 LIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN  279 (466)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC
T ss_pred             EEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc
Confidence            9999999887765  778899999999999998875 57789999999999999987765 8899999999999999998


Q ss_pred             cChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHH
Q 014200          245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA  324 (429)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~  324 (429)
                      ++. +..+++|+.|++++|.+.+++......+|++|++++|.++++++ +..+++|+.|++++|.+++++.         
T Consensus       280 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~---------  348 (466)
T 1o6v_A          280 ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVSS---------  348 (466)
T ss_dssp             CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCGG---------
T ss_pred             ccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCchh---------
Confidence            876 88999999999999999988776666679999999999999766 7899999999999999876421         


Q ss_pred             HHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcc---
Q 014200          325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS---  401 (429)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~---  401 (429)
                                                  ...+++|+.|++++|.++.++. +..++.|+.|++++|.+++.|..+..   
T Consensus       349 ----------------------------l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~~~~~~~  399 (466)
T 1o6v_A          349 ----------------------------LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVS  399 (466)
T ss_dssp             ----------------------------GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBCCCSEEE
T ss_pred             ----------------------------hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchhhcccce
Confidence                                        1123689999999999997775 88999999999999999986654321   


Q ss_pred             ----cccceeeccccCCCcccc
Q 014200          402 ----CASLQVKFSDLVTNKESC  419 (429)
Q Consensus       402 ----l~~L~~L~~~l~~n~i~~  419 (429)
                          +..+..+.  ++.+.|++
T Consensus       400 ip~~~~~~~~~~--~~~~~is~  419 (466)
T 1o6v_A          400 IPNTVKNVTGAL--IAPATISD  419 (466)
T ss_dssp             EECCCBCTTSCB--CCCSEEST
T ss_pred             ecccccccCCCe--ecCceecC
Confidence                23344445  55555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3e-34  Score=276.87  Aligned_cols=342  Identities=24%  Similarity=0.298  Sum_probs=203.2

Q ss_pred             HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (429)
Q Consensus         5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~   84 (429)
                      +..+++|++|+++++.++.+|.  +.            .+++|++|++++|.++.++  +..+++|++|++++|.++.++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~~--l~------------~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~  101 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMTG--IE------------KLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD  101 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCTT--GG------------GCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             hhHcCCCCEEEccCCCcccChh--hc------------ccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee
Confidence            3445566666666666655541  22            1455666666666666553  555666666666666665553


Q ss_pred             hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCc-cccCCccccccCCCc
Q 014200           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMS  163 (429)
Q Consensus        85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~  163 (429)
                        +.++++|++|++++|.+..++  ++.+++|++|++++|++..++  +..+++|++|++++|. +..+  .+..+++|+
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             --cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence              555666666666666665553  555666666666666665542  4555566666666652 2233  344555666


Q ss_pred             EEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (429)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  243 (429)
                      .|++++|.++.++   +..++.|+.+++++|.++.++  +..+++|+.|++++|.++.+|  +..+++|++|++++|.++
T Consensus       174 ~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          174 TLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             EEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS
T ss_pred             EEECCCCccceec---cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC
Confidence            6666666555543   445555666666666555542  455556666666666555554  455556666666666555


Q ss_pred             ccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCC-ccccccCCC
Q 014200          244 ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRT-LRSSLVNGP  321 (429)
Q Consensus       244 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~  321 (429)
                      .++  .+.+++|+.|++++|.            ++.+++++|.+.+ +|  +..+++|+.|++++|...+ ++..   . 
T Consensus       247 ~~~--~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~---~-  306 (457)
T 3bz5_A          247 ELD--VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQ---A-  306 (457)
T ss_dssp             CCC--CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECT---T-
T ss_pred             CcC--HHHCCCCCEEeccCCC------------CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccC---C-
Confidence            543  3345555555555432            3445555555433 32  4677889999999887432 2210   0 


Q ss_pred             cHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChh---
Q 014200          322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE---  398 (429)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~---  398 (429)
                               ..+...               ....+++|+.|++++|+++.++  +..+++|+.|++++|++++++.-   
T Consensus       307 ---------~~L~~L---------------~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~L~~L  360 (457)
T 3bz5_A          307 ---------AGITEL---------------DLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSSVGKI  360 (457)
T ss_dssp             ---------CCCSCC---------------CCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTTGGGS
T ss_pred             ---------CcceEe---------------chhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccccccc
Confidence                     000000               0122368899999999999874  78899999999999999875421   


Q ss_pred             ---------hcccccceeeccccCCCcccc-cccccc
Q 014200          399 ---------LSSCASLQVKFSDLVTNKESC-ISGCYL  425 (429)
Q Consensus       399 ---------l~~l~~L~~L~~~l~~n~i~~-i~~~~~  425 (429)
                               ...+..|+.++  +++|++++ ||+.++
T Consensus       361 ~l~~n~l~g~~~~~~l~~l~--l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          361 PALNNNFEAEGQTITMPKET--LTNNSLTIAVSPDLL  395 (457)
T ss_dssp             SGGGTSEEEEEEEEECCCBC--CBTTBEEEECCTTCB
T ss_pred             cccCCcEEecceeeecCccc--cccCcEEEEcChhHh
Confidence                     12335678889  99999998 887654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.6e-34  Score=276.99  Aligned_cols=307  Identities=25%  Similarity=0.320  Sum_probs=161.5

Q ss_pred             CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCC
Q 014200           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ  125 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~  125 (429)
                      +|++|++++|.++.+|..   .++|++|++++|.++.++..   .++|++|++++|.+..+| .++++++|++|++++|+
T Consensus        92 ~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A           92 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred             CCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc
Confidence            355555555555554422   24555555555555444321   145555555555555554 35555555555555555


Q ss_pred             CCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccC
Q 014200          126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS  205 (429)
Q Consensus       126 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  205 (429)
                      +..+|...   .+|++|++++|.++.+| .+..+++|+.|++++|.+..++..    .++|+++++++|.++.+|. +..
T Consensus       165 l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp~-~~~  235 (454)
T 1jl5_A          165 LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE-LQN  235 (454)
T ss_dssp             CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCCC-CTT
T ss_pred             CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCcccc-cCC
Confidence            55544322   35555555555555544 355555555555555555543321    1355555555555555542 455


Q ss_pred             CccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCC
Q 014200          206 LSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN  285 (429)
Q Consensus       206 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n  285 (429)
                      +++|+.|++++|.+..+|..   .++|++|++++|.++.+|..   .++|+.|++++|.+++++..  +.+|++|++++|
T Consensus       236 l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~--~~~L~~L~l~~N  307 (454)
T 1jl5_A          236 LPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL--PPNLYYLNASSN  307 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC--CTTCCEEECCSS
T ss_pred             CCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc--CCcCCEEECcCC
Confidence            55555555555555554432   24555555555555554432   24555555555555554321  234555555555


Q ss_pred             CCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccccccccccc
Q 014200          286 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE  365 (429)
Q Consensus       286 ~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~  365 (429)
                      .+++++..   .++|+.|++++|.+++++..                                       +++|+.|+++
T Consensus       308 ~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---------------------------------------~~~L~~L~L~  345 (454)
T 1jl5_A          308 EIRSLCDL---PPSLEELNVSNNKLIELPAL---------------------------------------PPRLERLIAS  345 (454)
T ss_dssp             CCSEECCC---CTTCCEEECCSSCCSCCCCC---------------------------------------CTTCCEEECC
T ss_pred             cCCcccCC---cCcCCEEECCCCcccccccc---------------------------------------CCcCCEEECC
Confidence            55543321   13566666666655443321                                       2578999999


Q ss_pred             CCccccCChhhhccCCCcEEeCCCCcccc---CChhhccc-------------ccceeeccccCCCcccc---cccc
Q 014200          366 GMNLSAIPSEIWEAGEITKLDLSRNSIQE---LPPELSSC-------------ASLQVKFSDLVTNKESC---ISGC  423 (429)
Q Consensus       366 ~~~i~~~~~~~~~~~~L~~L~ls~n~i~~---~~~~l~~l-------------~~L~~L~~~l~~n~i~~---i~~~  423 (429)
                      +|.++.+|.   .+++|++|++++|++++   +|..+..+             ++|++|+  +++|++++   ||++
T Consensus       346 ~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~--ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          346 FNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLH--VETNPLREFPDIPES  417 (454)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------
T ss_pred             CCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEE--CCCCcCCccccchhh
Confidence            999999987   47899999999999887   67788777             8899999  99999986   5554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.6e-34  Score=290.26  Aligned_cols=163  Identities=21%  Similarity=0.207  Sum_probs=122.6

Q ss_pred             cccCCCcEEEcCCCCCCcc--ChhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCC--CCccccCCCCC
Q 014200          227 SGCCSLAEFYMGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSG--LPPEIGKMTTL  300 (429)
Q Consensus       227 ~~~~~L~~L~l~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~--l~~~l~~~~~L  300 (429)
                      ..+++|+.+++..+.....  +..+..+++++.+++++|.+.......+.  ..++.+++++|.+..  .|..+..+++|
T Consensus       417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L  496 (635)
T 4g8a_A          417 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  496 (635)
T ss_dssp             TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc
Confidence            3444555555554433322  23456677777888888777765444332  348999999887544  57778889999


Q ss_pred             CEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCCh-hhhcc
Q 014200          301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEA  379 (429)
Q Consensus       301 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~-~~~~~  379 (429)
                      +.|++++|.+++++...|.+                                   .++|++|+|++|+|+.++. .+..+
T Consensus       497 ~~L~Ls~N~L~~l~~~~f~~-----------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l  541 (635)
T 4g8a_A          497 TFLDLSQCQLEQLSPTAFNS-----------------------------------LSSLQVLNMSHNNFFSLDTFPYKCL  541 (635)
T ss_dssp             CEEECTTSCCCEECTTTTTT-----------------------------------CTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred             CEEECCCCccCCcChHHHcC-----------------------------------CCCCCEEECCCCcCCCCChhHHhCC
Confidence            99999999998876555544                                   2589999999999997754 56789


Q ss_pred             CCCcEEeCCCCcccc-CChhhccc-ccceeeccccCCCccccccccccccc
Q 014200          380 GEITKLDLSRNSIQE-LPPELSSC-ASLQVKFSDLVTNKESCISGCYLYWN  428 (429)
Q Consensus       380 ~~L~~L~ls~n~i~~-~~~~l~~l-~~L~~L~~~l~~n~i~~i~~~~~~~~  428 (429)
                      ++|++|||++|+|++ .|+.+..+ ++|++|+  +++|+++|  +|-+.|.
T Consensus       542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~--L~~Np~~C--~C~~~~~  588 (635)
T 4g8a_A          542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN--LTQNDFAC--TCEHQSF  588 (635)
T ss_dssp             TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE--CTTCCBCC--SGGGHHH
T ss_pred             CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE--eeCCCCcc--cCCcHHH
Confidence            999999999999999 67778887 6899999  99999999  8887774

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.5e-34  Score=274.25  Aligned_cols=351  Identities=24%  Similarity=0.237  Sum_probs=188.4

Q ss_pred             HhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCC-ccchhccCCCC-------------CCE
Q 014200            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-KLKEDLRNLPL-------------LTV   72 (429)
Q Consensus         7 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~-------------L~~   72 (429)
                      +.+.|++|++++++++.+|+.+. .            +++|++|++++|.+. .+|..++++++             +++
T Consensus         9 ~~~~L~~L~l~~n~l~~iP~~i~-~------------L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~   75 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNLTEMPVEAE-N------------VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE   75 (454)
T ss_dssp             --------------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSE
T ss_pred             ccccchhhhcccCchhhCChhHh-c------------ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCE
Confidence            35789999999999988887542 2            455666666655554 45555554443             366


Q ss_pred             EECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccC
Q 014200           73 LNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL  152 (429)
Q Consensus        73 L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~  152 (429)
                      |++++|.++.+|..   .++|++|++++|.++.+|..   .++|++|++++|++..++..   .++|++|++++|.++.+
T Consensus        76 L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~l  146 (454)
T 1jl5_A           76 LELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKL  146 (454)
T ss_dssp             EECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSC
T ss_pred             EEecCCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCC
Confidence            66666665555441   24566666666655555532   25566666666655554331   14566666666665555


Q ss_pred             CccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCC
Q 014200          153 PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL  232 (429)
Q Consensus       153 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  232 (429)
                      | .+..+++|++|++++|.+..++..    .++|++|++++|.++.+| .+..+++|+.|++++|.+..+|...   ++|
T Consensus       147 p-~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L  217 (454)
T 1jl5_A          147 P-ELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP---LSL  217 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC---TTC
T ss_pred             c-ccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc---Ccc
Confidence            5 355566666666666655544321    235666666666665555 3555666666666666555544322   356


Q ss_pred             cEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCC
Q 014200          233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (429)
Q Consensus       233 ~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~  312 (429)
                      ++|++++|.++.+|. +..+++|+.|++++|.+++++..  ..+|++|++++|.++++|..   .++|+.|++++|.+++
T Consensus       218 ~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          218 ESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG  291 (454)
T ss_dssp             CEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE
T ss_pred             cEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc
Confidence            666666666555552 55566666666666665554432  23466666666666555442   2455666666665554


Q ss_pred             ccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcc
Q 014200          313 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSI  392 (429)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i  392 (429)
                      ++...      .       .+....++.....      .....+++|+.|++++|+++.+|..   +++|++|++++|++
T Consensus       292 l~~~~------~-------~L~~L~l~~N~l~------~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l  349 (454)
T 1jl5_A          292 LSELP------P-------NLYYLNASSNEIR------SLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHL  349 (454)
T ss_dssp             ESCCC------T-------TCCEEECCSSCCS------EECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred             ccCcC------C-------cCCEEECcCCcCC------cccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCcc
Confidence            33110      0       0000000000000      0011235889999999999998865   58999999999999


Q ss_pred             ccCChhhcccccceeeccccCCCcccccc
Q 014200          393 QELPPELSSCASLQVKFSDLVTNKESCIS  421 (429)
Q Consensus       393 ~~~~~~l~~l~~L~~L~~~l~~n~i~~i~  421 (429)
                      +++|.   .+++|++|+  +++|+++++|
T Consensus       350 ~~lp~---~l~~L~~L~--L~~N~l~~l~  373 (454)
T 1jl5_A          350 AEVPE---LPQNLKQLH--VEYNPLREFP  373 (454)
T ss_dssp             SCCCC---CCTTCCEEE--CCSSCCSSCC
T ss_pred             ccccc---hhhhccEEE--CCCCCCCcCC
Confidence            99888   478999999  9999999944

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.6e-33  Score=261.90  Aligned_cols=307  Identities=20%  Similarity=0.302  Sum_probs=223.0

Q ss_pred             HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (429)
Q Consensus         5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~   84 (429)
                      +..+++++.|+++++.+.+++.  +.            .+++|++|++++|.++.++. +..+++|++|++++|.++.++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~--~~------------~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~  104 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQG--IE------------YLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS  104 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             chhcccccEEEEeCCccccchh--hh------------hcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch
Confidence            4578899999999999998864  33            27889999999999999886 999999999999999999875


Q ss_pred             hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (429)
Q Consensus        85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~  164 (429)
                       .+.++++|++|++++|.+..++. +..+++|++|++++|.....+..+..+++|++|++++|.+..++. +..+++|+.
T Consensus       105 -~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~  181 (347)
T 4fmz_A          105 -ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYS  181 (347)
T ss_dssp             -GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSE
T ss_pred             -HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCE
Confidence             68999999999999999998876 889999999999999655555668899999999999999887755 788999999


Q ss_pred             EEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCc
Q 014200          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA  244 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~  244 (429)
                      |++++|.+..++.  +..++.|+.+++++|.+...+. +..+++|+.|++++|.+..                       
T Consensus       182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-----------------------  235 (347)
T 4fmz_A          182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-----------------------  235 (347)
T ss_dssp             EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-----------------------
T ss_pred             EEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-----------------------
Confidence            9999998877654  5566666666666665554433 4444555555555554444                       


Q ss_pred             cChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHH
Q 014200          245 LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPA  324 (429)
Q Consensus       245 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~  324 (429)
                      ++. +..+++|++|++++|.++.++......+|++|++++|.++++ +.+..+++|+.|++++|.+++.+...+      
T Consensus       236 ~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l------  307 (347)
T 4fmz_A          236 LSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVI------  307 (347)
T ss_dssp             CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCGGGHHHH------
T ss_pred             Ccc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCEEECcCCcCCCcChhHh------
Confidence            433 444455555555555554443333333455566666655555 336667777777777777654321111      


Q ss_pred             HHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccc
Q 014200          325 LLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ  393 (429)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~  393 (429)
                                                   ...++|+.|++++|.++.++. +..+++|++|++++|.|+
T Consensus       308 -----------------------------~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          308 -----------------------------GGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -----------------------------HTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred             -----------------------------hccccCCEEEccCCccccccC-hhhhhccceeehhhhccc
Confidence                                         112467777777777777665 778899999999999876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.8e-34  Score=280.41  Aligned_cols=355  Identities=17%  Similarity=0.199  Sum_probs=243.4

Q ss_pred             cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCC
Q 014200           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQ  125 (429)
Q Consensus        48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~  125 (429)
                      +++++++++++.+|..+.  ++|++|++++|.++.++ ..|.++++|++|++++|.+..+ |..+.++++|++|++++|+
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            689999999999998665  89999999999999876 5899999999999999999977 6789999999999999999


Q ss_pred             CCcCCccccCCCCCCEEEcCCCcccc--CCccccccCCCcEEEccCCcccccChhhhhccccc--ceeecCCccC--C-c
Q 014200          126 LKELPSSLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL--N-G  198 (429)
Q Consensus       126 l~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~l--~-~  198 (429)
                      +..+|..  .+++|++|++++|.++.  +|..+..+++|++|++++|.+...   .+..++.|  +++++++|.+  . .
T Consensus        81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~l~~~~~  155 (520)
T 2z7x_B           81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGETYGEKE  155 (520)
T ss_dssp             CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred             eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccccccccc
Confidence            9988876  88999999999999985  568899999999999999988762   36677777  9999998877  2 2


Q ss_pred             CCccccC--------------------------Cc---------------------------------------------
Q 014200          199 MPETIGS--------------------------LS---------------------------------------------  207 (429)
Q Consensus       199 ~~~~~~~--------------------------~~---------------------------------------------  207 (429)
                      .|..+..                          ++                                             
T Consensus       156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  235 (520)
T 2z7x_B          156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN  235 (520)
T ss_dssp             CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred             ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence            2332222                          22                                             


Q ss_pred             ------------cCCeEeccCCcCc-cCCccc-----cccCCCcEEEcCCCCCCccC-hhhcCC---CCCCEEECCCCcC
Q 014200          208 ------------RLIRLDLHQNRIL-SIPSSI-----SGCCSLAEFYMGNNALSALP-AELGKL---SKLGTLDLHSNQL  265 (429)
Q Consensus       208 ------------~L~~L~l~~~~~~-~~~~~~-----~~~~~L~~L~l~~n~i~~~~-~~~~~~---~~L~~L~l~~n~l  265 (429)
                                  +|+.|++++|.+. .+|..+     ..+++|+.+++++|.+ .+| ..+..+   .+|+.|++++|.+
T Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l  314 (520)
T 2z7x_B          236 SFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRM  314 (520)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCC
T ss_pred             HHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcc
Confidence                        3444444444444 444444     4555555555555544 333 222111   3355555555544


Q ss_pred             ccccchhhccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCC
Q 014200          266 KEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT  344 (429)
Q Consensus       266 ~~~~~~~~~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (429)
                      ..........+|++|++++|.+++ ++..+.++++|+.|++++|.+++++.      .+..+   ........+......
T Consensus       315 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~---~~l~~L~~L~Ls~N~  385 (520)
T 2z7x_B          315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK------IAEMT---TQMKSLQQLDISQNS  385 (520)
T ss_dssp             CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH------HHHHH---TTCTTCCEEECCSSC
T ss_pred             ccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc------chHHH---hhCCCCCEEECCCCc
Confidence            433321223346666666666666 45556666666666666666654321      00000   000011111111100


Q ss_pred             hhh-HHhhhhccccccccccccCCccc-cCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccc
Q 014200          345 KED-LITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISG  422 (429)
Q Consensus       345 ~~~-~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~  422 (429)
                      ... .-...+...++|++|++++|.++ .+|..+.  ++|+.|++++|+++.+|..+..+++|++|+  +++|+++.+|+
T Consensus       386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~--L~~N~l~~l~~  461 (520)
T 2z7x_B          386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELN--VASNQLKSVPD  461 (520)
T ss_dssp             CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEE--CCSSCCCCCCT
T ss_pred             CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEE--CCCCcCCccCH
Confidence            000 00111233468899999999986 4554442  789999999999999999888999999999  99999999998


Q ss_pred             c
Q 014200          423 C  423 (429)
Q Consensus       423 ~  423 (429)
                      .
T Consensus       462 ~  462 (520)
T 2z7x_B          462 G  462 (520)
T ss_dssp             T
T ss_pred             H
Confidence            7

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=7e-34  Score=269.98  Aligned_cols=304  Identities=21%  Similarity=0.272  Sum_probs=172.3

Q ss_pred             cCCccEEEcCCCCCCccchh-ccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCC-ccccCCCCcCEEe
Q 014200           44 AVDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFD  120 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~  120 (429)
                      ++++++++++++.++.+|.. +..+++|++|++++|.++.++. .+..+++|++|++++|.+..++ ..+.++++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            34566666666666655543 4556666666666666555443 5556666666666666555443 2345556666666


Q ss_pred             cCCCCCCcCCcc-ccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCc
Q 014200          121 CSSNQLKELPSS-LGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG  198 (429)
Q Consensus       121 l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  198 (429)
                      +++|++..+|.. +..+++|++|++++|.+..++ ..+..+++|+.|++++|.+..++   +..++              
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~--------------  186 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIP--------------  186 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCT--------------
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---ccccc--------------
Confidence            666655555543 345555555555555555432 23455555555555555554432   23344              


Q ss_pred             CCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccC
Q 014200          199 MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLS  278 (429)
Q Consensus       199 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~  278 (429)
                               +|+.+++++|.+..+    ...++|++|++++|.++.++..  ..++|+.|++++|.+++.+.....++|+
T Consensus       187 ---------~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~  251 (390)
T 3o6n_A          187 ---------SLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLV  251 (390)
T ss_dssp             ---------TCSEEECCSSCCSEE----ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             ---------ccceeeccccccccc----CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCcc
Confidence                     444455544444332    1223455555555555544322  2345555666665555544333334466


Q ss_pred             EEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcccc
Q 014200          279 VLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV  357 (429)
Q Consensus       279 ~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (429)
                      +|++++|.++++ +..+.++++|+.|++++|.++.++...  +                                  ..+
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~----------------------------------~l~  295 (390)
T 3o6n_A          252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--Q----------------------------------PIP  295 (390)
T ss_dssp             EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSS--S----------------------------------CCT
T ss_pred             EEECCCCcCCCcChhHccccccCCEEECCCCcCcccCccc--C----------------------------------CCC
Confidence            666666666553 555666777777777777666544221  1                                  124


Q ss_pred             ccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccc
Q 014200          358 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       358 ~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      +|+.|++++|.++.+|..+..+++|++|++++|++++++  +..+++|++|+  +++|++++
T Consensus       296 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~--l~~N~~~~  353 (390)
T 3o6n_A          296 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLT--LSHNDWDC  353 (390)
T ss_dssp             TCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEE--CCSSCEEH
T ss_pred             CCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEE--cCCCCccc
Confidence            667777777777777777777777777777777777664  45667777777  77777776

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.9e-33  Score=291.98  Aligned_cols=382  Identities=19%  Similarity=0.211  Sum_probs=237.6

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCC-CCCc-chhhh
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PAAIG   88 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~-i~~~-~~~l~   88 (429)
                      +..|+++++++.+|. ..               +++++|++++|.++.+ +..|.++++|++|++++|. +..+ |.+|.
T Consensus         7 ~~~dcs~~~L~~vP~-lp---------------~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~   70 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ-VL---------------NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR   70 (844)
T ss_dssp             EEEEESCCCSSCCCS-SC---------------TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS
T ss_pred             eEEEccCCCCCCCCC-CC---------------CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc
Confidence            468999999999998 43               4588899998888866 4578888999999998884 4455 56888


Q ss_pred             CCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCc-CCcc--ccCCCCCCEEEcCCCccccC--CccccccCCC
Q 014200           89 ELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKE-LPSS--LGRCLNLSDFKASNNCITSL--PEDLADCSKM  162 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~-~~~~--~~~~~~L~~L~l~~~~~~~~--~~~l~~~~~L  162 (429)
                      ++++|++|++++|.+..+ |..+.++++|++|++++|.+.. ++..  +..+++|++|++++|.+..+  +..+..+++|
T Consensus        71 ~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L  150 (844)
T 3j0a_A           71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSL  150 (844)
T ss_dssp             SCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSC
T ss_pred             CCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCC
Confidence            889999999998888865 6778888899999998888874 4443  77888899999998888754  3467888899


Q ss_pred             cEEEccCCcccccChhhhhcc--cccceeecCCccCCc-CCccccCCcc------CCeEeccCCcCcc-CCcc-------
Q 014200          163 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNG-MPETIGSLSR------LIRLDLHQNRILS-IPSS-------  225 (429)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~-~~~~~~~~~~------L~~L~l~~~~~~~-~~~~-------  225 (429)
                      ++|++++|.+.......+..+  ++|+.+++++|.+.. .+..+..+++      |+.|++++|.+.. .+..       
T Consensus       151 ~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~  230 (844)
T 3j0a_A          151 KSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK  230 (844)
T ss_dssp             CEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred             CEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence            999998888876655556555  677777777776643 2333333332      6666666664331 1110       


Q ss_pred             -----------------------------ccc--cCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhh
Q 014200          226 -----------------------------ISG--CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC  273 (429)
Q Consensus       226 -----------------------------~~~--~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~  273 (429)
                                                   +.+  .++++.|++++|.++.+ +..+..+++|+.|++++|.++.+....+
T Consensus       231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~  310 (844)
T 3j0a_A          231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF  310 (844)
T ss_dssp             CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred             ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence                                         111  24566666666666544 3445666666666666666665543322


Q ss_pred             --ccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhh---
Q 014200          274 --QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED---  347 (429)
Q Consensus       274 --~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  347 (429)
                        ..+|++|++++|.++++ +..+..+++|+.|++++|.+..++...|.+...         +....++........   
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~---------L~~L~Ls~N~l~~i~~~~  381 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK---------LQTLDLRDNALTTIHFIP  381 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC---------CCEEEEETCCSCCCSSCC
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC---------CCEEECCCCCCCcccCCC
Confidence              22366666666666554 445666666666666666665555443322110         000000000000000   


Q ss_pred             ----------HHhhhhccccccccccccCCccccCCh--hhhccCCCcEEeCCCCccccCChh--hcccccceeeccccC
Q 014200          348 ----------LITMATRLSVTSKELSLEGMNLSAIPS--EIWEAGEITKLDLSRNSIQELPPE--LSSCASLQVKFSDLV  413 (429)
Q Consensus       348 ----------~~~~~~~~~~~L~~l~l~~~~i~~~~~--~~~~~~~L~~L~ls~n~i~~~~~~--l~~l~~L~~L~~~l~  413 (429)
                                .+........+++.+++++|.++.++.  .+..+++|++|++++|++++++..  +..+++|++|+  ++
T Consensus       382 ~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~--Ls  459 (844)
T 3j0a_A          382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF--LG  459 (844)
T ss_dssp             SCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCE--EE
T ss_pred             CcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccccc--CC
Confidence                      000000112345555555555554332  233667777777777777775554  34567777777  77


Q ss_pred             CCccccc
Q 014200          414 TNKESCI  420 (429)
Q Consensus       414 ~n~i~~i  420 (429)
                      +|.++.+
T Consensus       460 ~N~l~~~  466 (844)
T 3j0a_A          460 ENMLQLA  466 (844)
T ss_dssp             SCCCSSS
T ss_pred             CCccccc
Confidence            7777643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-33  Score=272.61  Aligned_cols=312  Identities=20%  Similarity=0.287  Sum_probs=198.6

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCc-chhhhC
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~-~~~l~~   89 (429)
                      +.+++++++++.+|..++               +++++|++++|.++.++ ..|.++++|++|++++|.++.+ |.+|.+
T Consensus        14 ~~v~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~   78 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGIP---------------TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN   78 (477)
T ss_dssp             TEEECCSCCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             CEEEeCCCCcCcCCCCCC---------------CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhC
Confidence            567888888888887653               34788888888888764 4688888888888888888766 557888


Q ss_pred             CCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccC-CccccccCCCcEEE
Q 014200           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLD  166 (429)
Q Consensus        90 l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~  166 (429)
                      +++|++|++++|.+..+|.. +.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|+.|+
T Consensus        79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEE
T ss_pred             CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEE
Confidence            88888888888888877654 67788888888888887754 44667777888888887777644 44567777777777


Q ss_pred             ccCCcccccChhhhhcccccceeecCCccCCcCC-ccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCCc
Q 014200          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALSA  244 (429)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~~  244 (429)
                      +++|.+..++...+..+++|+.|++++|.+..++ ..+..+++|+.|++++|... .++.......+|++|++++|.++.
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  238 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA  238 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc
Confidence            7777777776666666677777777666665443 24555566666666655433 333333333455555555555555


Q ss_pred             cCh-hhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcH
Q 014200          245 LPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTP  323 (429)
Q Consensus       245 ~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~  323 (429)
                      +|. .+..+++|+.|++++|.++.++.                     ..+.++++|+.|++++|.++.+....|.+   
T Consensus       239 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---  294 (477)
T 2id5_A          239 VPYLAVRHLVYLRFLNLSYNPISTIEG---------------------SMLHELLRLQEIQLVGGQLAVVEPYAFRG---  294 (477)
T ss_dssp             CCHHHHTTCTTCCEEECCSSCCCEECT---------------------TSCTTCTTCCEEECCSSCCSEECTTTBTT---
T ss_pred             cCHHHhcCccccCeeECCCCcCCccCh---------------------hhccccccCCEEECCCCccceECHHHhcC---
Confidence            542 34555555555555554443322                     23455566666666666655433222211   


Q ss_pred             HHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChh-hhccCCCcEEeCCCCcccc
Q 014200          324 ALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQE  394 (429)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~-~~~~~~L~~L~ls~n~i~~  394 (429)
                                                      .++|+.|++++|.++.++.. +..+++|++|++++|.+..
T Consensus       295 --------------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          295 --------------------------------LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             --------------------------------CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             --------------------------------cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence                                            13445555555555554443 3356666667776666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.3e-33  Score=266.77  Aligned_cols=305  Identities=20%  Similarity=0.238  Sum_probs=180.8

Q ss_pred             cccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEec
Q 014200           42 WEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (429)
Q Consensus        42 ~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l  121 (429)
                      .++++|++|+++++.++.+| .+..+++|++|++++|.++.+|  +..+++|++|++++|.+..++  ++++++|++|++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L  113 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC  113 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred             hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence            34566777777776666665 4666667777777777666654  566666777777766666653  566666666666


Q ss_pred             CCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCc-ccccChhhhhcccccceeecCCccCCcCC
Q 014200          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLNGMP  200 (429)
Q Consensus       122 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  200 (429)
                      ++|++..++  +..+++|++|++++|.++.++  +..+++|+.|++++|. +..++   +..+++|++|++++|.++.+|
T Consensus       114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~  186 (457)
T 3bz5_A          114 DTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD  186 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec
Confidence            666666653  556666666666666666542  5556666666666652 22221   344455555555555555443


Q ss_pred             ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEE
Q 014200          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVL  280 (429)
Q Consensus       201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l  280 (429)
                        +..+++|+.|++++|.++.++  +..+++|++|++++|.++.+|  +..+++|+.|++++                  
T Consensus       187 --l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~------------------  242 (457)
T 3bz5_A          187 --VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSV------------------  242 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCS------------------
T ss_pred             --cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeC------------------
Confidence              444455555555555544431  444455555555555554443  44444455555544                  


Q ss_pred             EccCCCCCCCCccccCCCCCCEEEccCCCCCCccccc--cCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccc
Q 014200          281 DLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL--VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT  358 (429)
Q Consensus       281 ~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  358 (429)
                          |++++++  +..+++|+.++++++.++.+.-..  +.+..+                             ...+++
T Consensus       243 ----N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-----------------------------~~~l~~  287 (457)
T 3bz5_A          243 ----NPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-----------------------------AEGCRK  287 (457)
T ss_dssp             ----SCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-----------------------------CTTCTT
T ss_pred             ----CcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-----------------------------cccccc
Confidence                4444443  233444555554444444332110  011111                             112367


Q ss_pred             cccccccCCccc-cCCh--------hhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCcccccc
Q 014200          359 SKELSLEGMNLS-AIPS--------EIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCIS  421 (429)
Q Consensus       359 L~~l~l~~~~i~-~~~~--------~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~  421 (429)
                      |+.|++++|... .+|.        .+..+++|++|++++|++++++  ++.|++|++|+  +++|+++++|
T Consensus       288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~--l~~N~l~~l~  355 (457)
T 3bz5_A          288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLS--CVNAHIQDFS  355 (457)
T ss_dssp             CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEE--CCSSCCCBCT
T ss_pred             CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEE--CCCCCCCCcc
Confidence            888888888643 2221        2567899999999999999974  88999999999  9999999865

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.5e-33  Score=275.33  Aligned_cols=333  Identities=19%  Similarity=0.226  Sum_probs=233.1

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEec
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDC  121 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l  121 (429)
                      |...++++++++.++.+|..+.  +++++|++++|.++.++ .+|.++++|++|++++|.++.+ |..+.++++|++|++
T Consensus        30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            5556899999999999997664  89999999999999886 5899999999999999999977 567899999999999


Q ss_pred             CCCCCCcCCccccCCCCCCEEEcCCCccccCC--ccccccCCCcEEEccCCcccccChhhhhccccc--ceeecCCccC-
Q 014200          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSNNLIASWTML--TELIASKNLL-  196 (429)
Q Consensus       122 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~l-  196 (429)
                      ++|++..+|..  .+++|++|++++|.++.++  ..+..+++|++|++++|.+....   +..++.+  +++++++|.+ 
T Consensus       108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~  182 (562)
T 3a79_B          108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYH  182 (562)
T ss_dssp             TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred             CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccc
Confidence            99999998876  8999999999999999754  78999999999999999887643   4555666  9999998877 


Q ss_pred             -Cc-CCcccc--------------------------CCccCCeEecc---------------------------------
Q 014200          197 -NG-MPETIG--------------------------SLSRLIRLDLH---------------------------------  215 (429)
Q Consensus       197 -~~-~~~~~~--------------------------~~~~L~~L~l~---------------------------------  215 (429)
                       .. .|..+.                          .+++|+.++++                                 
T Consensus       183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred             ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence             32 222222                          22334444444                                 


Q ss_pred             ----------------------CCcCc-cCCccc-----cccC--------------------------CCcEEEcCCCC
Q 014200          216 ----------------------QNRIL-SIPSSI-----SGCC--------------------------SLAEFYMGNNA  241 (429)
Q Consensus       216 ----------------------~~~~~-~~~~~~-----~~~~--------------------------~L~~L~l~~n~  241 (429)
                                            +|.+. .+|..+     ..++                          ++++|++++|.
T Consensus       263 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~  342 (562)
T 3a79_B          263 WKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP  342 (562)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence                                  33333 233222     1111                          23333333333


Q ss_pred             CCccChhhcCCCCCCEEECCCCcCccccchh--hccccCEEEccCCCCCCCC---ccccCCCCCCEEEccCCCCCC-ccc
Q 014200          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSVLDLSNNSLSGLP---PEIGKMTTLRKLLLTGNPLRT-LRS  315 (429)
Q Consensus       242 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~l~l~~n~l~~l~---~~l~~~~~L~~L~l~~~~i~~-~~~  315 (429)
                      +..++. ...+++|+.|++++|.+++..+..  ...+|++|++++|.+++++   ..+.++++|+.|++++|.+++ ++.
T Consensus       343 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  421 (562)
T 3a79_B          343 FIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD  421 (562)
T ss_dssp             CCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred             cccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence            222110 134555666666666555422221  1223666666666665543   235555666666666666554 443


Q ss_pred             cccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc-cCChhhhccCCCcEEeCCCCcccc
Q 014200          316 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE  394 (429)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~  394 (429)
                      ..+.                                   ..++|+.|++++|.++ .+|..+.  ++|++|++++|+++.
T Consensus       422 ~~~~-----------------------------------~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~  464 (562)
T 3a79_B          422 RTCA-----------------------------------WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS  464 (562)
T ss_dssp             CCCC-----------------------------------CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC
T ss_pred             hhhc-----------------------------------CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc
Confidence            3222                                   2358899999999987 3444332  789999999999999


Q ss_pred             CChhhcccccceeeccccCCCcccccccc
Q 014200          395 LPPELSSCASLQVKFSDLVTNKESCISGC  423 (429)
Q Consensus       395 ~~~~l~~l~~L~~L~~~l~~n~i~~i~~~  423 (429)
                      +|..+..+++|++|+  +++|+++.+|+.
T Consensus       465 ip~~~~~l~~L~~L~--L~~N~l~~l~~~  491 (562)
T 3a79_B          465 IPKDVTHLQALQELN--VASNQLKSVPDG  491 (562)
T ss_dssp             CCTTTTSSCCCSEEE--CCSSCCCCCCTT
T ss_pred             cChhhcCCCCCCEEE--CCCCCCCCCCHH
Confidence            999888999999999  999999999987

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5e-33  Score=269.67  Aligned_cols=339  Identities=16%  Similarity=0.160  Sum_probs=278.2

Q ss_pred             ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCc-cC-CccccCCCCcCEEecCC
Q 014200           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIM-KI-PDEIGSATALVKFDCSS  123 (429)
Q Consensus        47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~-~l-~~~~~~~~~L~~L~l~~  123 (429)
                      -+.++.++++++.+|. +  .++|++|++++|.++.+ |..+.++++|++|++++|.+. .+ +..+.++++|++|++++
T Consensus        12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~   88 (455)
T 3v47_A           12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY   88 (455)
T ss_dssp             TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred             ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence            3568888888999986 3  37899999999999977 668999999999999999876 45 45689999999999999


Q ss_pred             CCCCcC-CccccCCCCCCEEEcCCCcccc-CCc--cccccCCCcEEEccCCcccccChh-hhhcccccceeecCCccCCc
Q 014200          124 NQLKEL-PSSLGRCLNLSDFKASNNCITS-LPE--DLADCSKMSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLNG  198 (429)
Q Consensus       124 ~~l~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~--~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~  198 (429)
                      |++..+ |..+..+++|++|++++|.++. .+.  .+..+++|++|++++|.+..+.+. .+..+++|++|++++|.++.
T Consensus        89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  168 (455)
T 3v47_A           89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS  168 (455)
T ss_dssp             CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred             CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence            999866 6789999999999999999884 333  388899999999999999887544 47899999999999999976


Q ss_pred             C-CccccCC--ccCCeEeccCCcCccCCcc---------ccccCCCcEEEcCCCCCCc-cChhhc---CCCCCCEEECCC
Q 014200          199 M-PETIGSL--SRLIRLDLHQNRILSIPSS---------ISGCCSLAEFYMGNNALSA-LPAELG---KLSKLGTLDLHS  262 (429)
Q Consensus       199 ~-~~~~~~~--~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~l~~n~i~~-~~~~~~---~~~~L~~L~l~~  262 (429)
                      . +..+..+  .+++.+++++|.+..++..         +..+++|++|++++|.++. .+..+.   ..++|+.+++++
T Consensus       169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~  248 (455)
T 3v47_A          169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN  248 (455)
T ss_dssp             CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred             cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence            5 4444443  6899999999998876532         3456889999999999984 355543   348999999998


Q ss_pred             CcCcccc----------ch----hhccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHH
Q 014200          263 NQLKEYC----------VE----ACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK  327 (429)
Q Consensus       263 n~l~~~~----------~~----~~~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~  327 (429)
                      |......          ..    ....+++++++++|.+++ .+..+..+++|+.|++++|.+++++...+.+       
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------  321 (455)
T 3v47_A          249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-------  321 (455)
T ss_dssp             CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-------
T ss_pred             ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-------
Confidence            8543211          11    112469999999999998 5777999999999999999998765444332       


Q ss_pred             HHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC-ChhhhccCCCcEEeCCCCcccc-CChhhcccccc
Q 014200          328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LPPELSSCASL  405 (429)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L  405 (429)
                                                  .++|+.|++++|.++.+ +..+..+++|++|++++|++++ .|..+..+++|
T Consensus       322 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          322 ----------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL  373 (455)
T ss_dssp             ----------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ----------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence                                        25899999999999966 5677889999999999999999 68899999999


Q ss_pred             eeeccccCCCcccccccccc
Q 014200          406 QVKFSDLVTNKESCISGCYL  425 (429)
Q Consensus       406 ~~L~~~l~~n~i~~i~~~~~  425 (429)
                      ++|+  +++|+++++|+..+
T Consensus       374 ~~L~--L~~N~l~~~~~~~~  391 (455)
T 3v47_A          374 KELA--LDTNQLKSVPDGIF  391 (455)
T ss_dssp             CEEE--CCSSCCSCCCTTTT
T ss_pred             cEEE--CCCCccccCCHhHh
Confidence            9999  99999999988654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=9.6e-33  Score=276.09  Aligned_cols=304  Identities=21%  Similarity=0.251  Sum_probs=180.8

Q ss_pred             CCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEc
Q 014200           68 PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKA  144 (429)
Q Consensus        68 ~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l  144 (429)
                      ++++.++++++.++.+|. .+.++++|++|++++|.+..++. .+..+++|++|++++|.+..++. .+..+++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            444555555555444443 34445555555555554444332 34445555555555555544432 2344555555555


Q ss_pred             CCCccccCCcc-ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCC
Q 014200          145 SNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP  223 (429)
Q Consensus       145 ~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~  223 (429)
                      ++|.++.+|.. +..+++|++|++++|.+..+++..+..+++|++|++++|.++.++  +..+++|+.+++++|.+..+ 
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l-  207 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL-  207 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE-
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc-
Confidence            55555544433 344555555555555555544444555555555555555554443  33445566666666655443 


Q ss_pred             ccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCC-CccccCCCCCCE
Q 014200          224 SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRK  302 (429)
Q Consensus       224 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~  302 (429)
                         ...++|+.|++++|.++.++..+  .++|+.|++++|.+++.+.....++|+.|++++|.++++ |..+..+++|+.
T Consensus       208 ---~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          208 ---AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             ---ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             ---cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence               23345666666666666554322  256777777777766654444445577777777777764 566777888888


Q ss_pred             EEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCC
Q 014200          303 LLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI  382 (429)
Q Consensus       303 L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L  382 (429)
                      |++++|.++.++...  +                                  ..++|+.|++++|.++.+|..+..+++|
T Consensus       283 L~Ls~N~l~~l~~~~--~----------------------------------~l~~L~~L~Ls~N~l~~i~~~~~~l~~L  326 (597)
T 3oja_B          283 LYISNNRLVALNLYG--Q----------------------------------PIPTLKVLDLSHNHLLHVERNQPQFDRL  326 (597)
T ss_dssp             EECTTSCCCEEECSS--S----------------------------------CCTTCCEEECCSSCCCCCGGGHHHHTTC
T ss_pred             EECCCCCCCCCCccc--c----------------------------------cCCCCcEEECCCCCCCccCcccccCCCC
Confidence            888888877654322  1                                  1247788888888888888888888888


Q ss_pred             cEEeCCCCccccCChhhcccccceeeccccCCCcccc
Q 014200          383 TKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       383 ~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      ++|+|++|.++++|  +..+++|++|+  +++|+++|
T Consensus       327 ~~L~L~~N~l~~~~--~~~~~~L~~L~--l~~N~~~~  359 (597)
T 3oja_B          327 ENLYLDHNSIVTLK--LSTHHTLKNLT--LSHNDWDC  359 (597)
T ss_dssp             SEEECCSSCCCCCC--CCTTCCCSEEE--CCSSCEEH
T ss_pred             CEEECCCCCCCCcC--hhhcCCCCEEE--eeCCCCCC
Confidence            88888888888765  56778888888  88888877

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.1e-32  Score=255.40  Aligned_cols=305  Identities=19%  Similarity=0.231  Sum_probs=225.4

Q ss_pred             hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-
Q 014200            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-   85 (429)
Q Consensus         8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-   85 (429)
                      .++++.++++++.++.+|+..+..            +++|++|+++++.++.++. .|..+++|++|++++|.++.++. 
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~------------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  111 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDS------------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  111 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHH------------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCceEEEecCCchhhCChhHhcc------------cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence            578899999999999999998876            6779999999999998875 79999999999999999997754 


Q ss_pred             hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCccccccCCCc
Q 014200           86 AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMS  163 (429)
Q Consensus        86 ~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~  163 (429)
                      .+.++++|++|++++|.+..+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.++.++  +..+++|+
T Consensus       112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~  189 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLF  189 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCS
T ss_pred             HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccc
Confidence            789999999999999999999876 588999999999999999775 46889999999999999998763  56789999


Q ss_pred             EEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (429)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  243 (429)
                      .+++++|.+..++     ..+.++++++++|.+..++..  ..++|+.|++++|.+... ..+..+++|++|++++|.++
T Consensus       190 ~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~  261 (390)
T 3o6n_A          190 HANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE  261 (390)
T ss_dssp             EEECCSSCCSEEE-----CCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC
T ss_pred             eeecccccccccC-----CCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCC
Confidence            9999999776543     334677777777777655432  235666677766666654 34566666666666666666


Q ss_pred             cc-ChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCc
Q 014200          244 AL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT  322 (429)
Q Consensus       244 ~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~  322 (429)
                      .+ |..+..+++|+.|++++|.+++++                      ..+..+++|+.|++++|.+++++...     
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~~~-----  314 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISNNRLVALN----------------------LYGQPIPTLKVLDLSHNHLLHVERNQ-----  314 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCSSCCCEEE----------------------CSSSCCTTCCEEECCSSCCCCCGGGH-----
T ss_pred             CcChhHccccccCCEEECCCCcCcccC----------------------cccCCCCCCCEEECCCCcceecCccc-----
Confidence            44 455666666666666666555443                      33344455555555555554332110     


Q ss_pred             HHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcccc
Q 014200          323 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE  394 (429)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~  394 (429)
                          .                           ..++|+.|++++|.++.++  +..+++|++|++++|+++.
T Consensus       315 ----~---------------------------~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          315 ----P---------------------------QFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             ----H---------------------------HHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred             ----c---------------------------ccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccc
Confidence                0                           0134555666666665554  4567888889999888875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.2e-30  Score=259.00  Aligned_cols=285  Identities=21%  Similarity=0.281  Sum_probs=247.2

Q ss_pred             hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-
Q 014200            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-   85 (429)
Q Consensus         8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-   85 (429)
                      .+.++.++++++.++.+|+..+..            +++|++|++++|.++.++. .|..+++|++|++++|.++.++. 
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  117 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDS------------FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  117 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHH------------CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCceEEEeeCCCCCCcCHHHHcc------------CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHH
Confidence            467889999999999999988876            6779999999999998775 79999999999999999997765 


Q ss_pred             hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCccccccCCCc
Q 014200           86 AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMS  163 (429)
Q Consensus        86 ~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~  163 (429)
                      .|.++++|++|++++|.+..+|.. +.++++|++|++++|.+..++ ..+..+++|++|++++|.++.++  +..+++|+
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~  195 (597)
T 3oja_B          118 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLF  195 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCS
T ss_pred             HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhh
Confidence            679999999999999999988776 588999999999999998765 46888999999999999988764  56788999


Q ss_pred             EEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (429)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  243 (429)
                      .+++++|.+..++     ..+.|+.|++++|.+..++...  .++|+.|++++|.++.. ..+..+++|+.|++++|.++
T Consensus       196 ~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~  267 (597)
T 3oja_B          196 HANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE  267 (597)
T ss_dssp             EEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC
T ss_pred             hhhcccCcccccc-----CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccC
Confidence            9999999877543     4467999999999998765433  36899999999998875 66889999999999999999


Q ss_pred             cc-ChhhcCCCCCCEEECCCCcCccccchhhc-cccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCcc
Q 014200          244 AL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLR  314 (429)
Q Consensus       244 ~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~  314 (429)
                      .+ |..+..+++|+.|++++|.+++++..... ++|+.|++++|.++.+|..+..+++|+.|++++|.++.++
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC
Confidence            66 77899999999999999999988766543 4699999999999999998999999999999999997654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=6.7e-30  Score=236.93  Aligned_cols=246  Identities=24%  Similarity=0.340  Sum_probs=157.0

Q ss_pred             CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCC
Q 014200           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS  123 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~  123 (429)
                      +++.++++++.++.+|..+.  ++++.|++++|.++.++. .+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            45555555555555554332  455555555555554443 455555555555555555544 34455555555555555


Q ss_pred             CCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC---cCC
Q 014200          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN---GMP  200 (429)
Q Consensus       124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~  200 (429)
                      |++..+|.                       .+.  ++|++|++++|.+..++...+..+++|+++++++|.+.   ..+
T Consensus       110 n~l~~l~~-----------------------~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  164 (330)
T 1xku_A          110 NQLKELPE-----------------------KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN  164 (330)
T ss_dssp             SCCSBCCS-----------------------SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             CcCCccCh-----------------------hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence            55544443                       322  45555555555555555554555555666666555553   234


Q ss_pred             ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhh--cccc
Q 014200          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRL  277 (429)
Q Consensus       201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L  277 (429)
                      ..+..+++|+.|++++|.+..+|..+.  ++|++|++++|.++.+ +..+..+++|+.|++++|.+++++...+  ..+|
T Consensus       165 ~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  242 (330)
T 1xku_A          165 GAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  242 (330)
T ss_dssp             TGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             hhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence            456667777777777777777765443  7888888888888866 5678888888888888888887665322  2458


Q ss_pred             CEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCC
Q 014200          278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG  320 (429)
Q Consensus       278 ~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~  320 (429)
                      ++|++++|.++.+|..+..+++|+.|++++|.+++++...|.+
T Consensus       243 ~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~  285 (330)
T 1xku_A          243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP  285 (330)
T ss_dssp             CEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred             CEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence            8888888888888888888999999999999998877665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.2e-33  Score=270.70  Aligned_cols=367  Identities=18%  Similarity=0.192  Sum_probs=278.2

Q ss_pred             hhcCeeeccCCCCccCChhh-hhhhccccCCCcccccCCccEEEcCCCCCC-----ccchhccCCCCCCEEECCCCCCCC
Q 014200            9 RTSGSLNLSNRSLRDVPNEV-YKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE   82 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~i~~   82 (429)
                      +++++||+++++++..+... +..            +++|++|++++|.++     .++..+..+++|++|++++|.++.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~------------~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             ccceehhhhhcccCchhHHHHHhh------------cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            57899999999987654332 443            778999999999988     456678899999999999999874


Q ss_pred             c-ch-hhhCCC----CCcEeecCCCcCc-----cCCccccCCCCcCEEecCCCCCCcC-----Ccc-ccCCCCCCEEEcC
Q 014200           83 L-PA-AIGELH----MLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKEL-----PSS-LGRCLNLSDFKAS  145 (429)
Q Consensus        83 ~-~~-~l~~l~----~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~l~~~-----~~~-~~~~~~L~~L~l~  145 (429)
                      . +. .+..++    +|++|++++|.+.     .++..+..+++|++|++++|.+...     ... ....++|++|+++
T Consensus        71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~  150 (461)
T 1z7x_W           71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  150 (461)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECC
Confidence            3 22 334455    7999999999887     3467788999999999999988632     122 2235689999999


Q ss_pred             CCcccc-----CCccccccCCCcEEEccCCcccccChhhhh-----cccccceeecCCccCCc-----CCccccCCccCC
Q 014200          146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLIA-----SWTMLTELIASKNLLNG-----MPETIGSLSRLI  210 (429)
Q Consensus       146 ~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~  210 (429)
                      +|.++.     ++..+..+++|++|++++|.+...+...+.     ..++|++|++++|.++.     ++..+..+++|+
T Consensus       151 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  230 (461)
T 1z7x_W          151 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  230 (461)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             CCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCcc
Confidence            998884     345677789999999999988765443332     24599999999999875     466677889999


Q ss_pred             eEeccCCcCccC------CccccccCCCcEEEcCCCCCCc-----cChhhcCCCCCCEEECCCCcCccccchhh------
Q 014200          211 RLDLHQNRILSI------PSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVEAC------  273 (429)
Q Consensus       211 ~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------  273 (429)
                      +|++++|.++..      +..+..+++|++|++++|.++.     ++..+..+++|++|++++|.+.+......      
T Consensus       231 ~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  310 (461)
T 1z7x_W          231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE  310 (461)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred             EEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhcc
Confidence            999999988743      2223468999999999999995     67778889999999999999874332211      


Q ss_pred             -ccccCEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhh
Q 014200          274 -QLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED  347 (429)
Q Consensus       274 -~~~L~~l~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (429)
                       ..+|++|++++|.+++     ++..+..+++|+.|++++|.+++.+..           ..                  
T Consensus       311 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-----------~l------------------  361 (461)
T 1z7x_W          311 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-----------EL------------------  361 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-----------HH------------------
T ss_pred             CCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-----------HH------------------
Confidence             1369999999999986     455678889999999999987532110           00                  


Q ss_pred             HHhhhhccccccccccccCCccc-----cCChhhhccCCCcEEeCCCCcccc-----CChhhcc-cccceeeccccCCCc
Q 014200          348 LITMATRLSVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE-----LPPELSS-CASLQVKFSDLVTNK  416 (429)
Q Consensus       348 ~~~~~~~~~~~L~~l~l~~~~i~-----~~~~~~~~~~~L~~L~ls~n~i~~-----~~~~l~~-l~~L~~L~~~l~~n~  416 (429)
                       ........++|++|++++|.++     .++..+..+++|++|++++|++++     +.+.+.. ..+|+.|+  +.++.
T Consensus       362 -~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~--~~~~~  438 (461)
T 1z7x_W          362 -CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV--LYDIY  438 (461)
T ss_dssp             -HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE--CTTCC
T ss_pred             -HHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhee--ecccc
Confidence             0011112368999999999999     688888999999999999999985     2222221 23577777  77776


Q ss_pred             ccc
Q 014200          417 ESC  419 (429)
Q Consensus       417 i~~  419 (429)
                      +..
T Consensus       439 ~~~  441 (461)
T 1z7x_W          439 WSE  441 (461)
T ss_dssp             CCH
T ss_pred             cCH
Confidence            654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.6e-30  Score=252.06  Aligned_cols=291  Identities=20%  Similarity=0.250  Sum_probs=255.6

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCCCCCcch-h
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-A   86 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~i~~~~~-~   86 (429)
                      +.++.|++++|+++.+++..|..            +++|++|++++|.++.+ +..|.++++|++|++++|.++.+|. .
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~------------l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   99 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFAS------------FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV   99 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTT------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTS
T ss_pred             CCCcEEECCCCccceECHhHccC------------CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCccc
Confidence            57899999999999988777665            78899999999999977 5679999999999999999998876 6


Q ss_pred             hhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccCCc-cccccCCCc
Q 014200           87 IGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMS  163 (429)
Q Consensus        87 l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~  163 (429)
                      |.++++|++|++++|.+..+ +..+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+
T Consensus       100 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  179 (477)
T 2id5_A          100 FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI  179 (477)
T ss_dssp             STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred             ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence            89999999999999999865 55688999999999999999866 4578899999999999999997764 488899999


Q ss_pred             EEEccCCcccccChhhhhcccccceeecCCccC-CcCCccccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCC
Q 014200          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA  241 (429)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~  241 (429)
                      .|++++|.+..++...+..+++|+.|++++|.. ..++.......+|+.|++++|.+..++ ..+..+++|++|++++|.
T Consensus       180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence            999999999988887789999999999999765 455665666679999999999999887 468899999999999999


Q ss_pred             CCccC-hhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCCCc-cccCCCCCCEEEccCCCCC
Q 014200          242 LSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLR  311 (429)
Q Consensus       242 i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~i~  311 (429)
                      ++.++ ..+..+++|+.|++++|.+.++.+..+.  .+|++|++++|.++.++. .+..+++|+.|++++|++.
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            99775 4688999999999999999987655443  459999999999999865 5788999999999999985

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.2e-30  Score=236.01  Aligned_cols=280  Identities=21%  Similarity=0.297  Sum_probs=242.0

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhh
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l   87 (429)
                      +++.++++++.++.+|...+               +++++|++++|.++.++. .|.++++|++|++++|.++.+ |..+
T Consensus        32 ~l~~l~~~~~~l~~lp~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDLP---------------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   96 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSCC---------------TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCeEEEecCCCccccCccCC---------------CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh
Confidence            68899999999999987663               459999999999998876 699999999999999999977 6789


Q ss_pred             hCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccc---cCCccccccCCCc
Q 014200           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (429)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~l~~~~~L~  163 (429)
                      .++++|++|++++|.+..+|..+.  ++|++|++++|.+..++. .+..+++|++|++++|.+.   ..+..+..+++|+
T Consensus        97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A           97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            999999999999999998887654  799999999999997764 5788999999999999886   3456788999999


Q ss_pred             EEEccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCC
Q 014200          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA  241 (429)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~  241 (429)
                      .|++++|.+..++...   .++|++|++++|.++.+ +..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.
T Consensus       175 ~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~  251 (330)
T 1xku_A          175 YIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  251 (330)
T ss_dssp             EEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             EEECCCCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence            9999999998877642   27899999999999876 567889999999999999999775 478999999999999999


Q ss_pred             CCccChhhcCCCCCCEEECCCCcCccccchhhc--------cccCEEEccCCCCCC--C-CccccCCCCCCEEEccCCC
Q 014200          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLSG--L-PPEIGKMTTLRKLLLTGNP  309 (429)
Q Consensus       242 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--------~~L~~l~l~~n~l~~--l-~~~l~~~~~L~~L~l~~~~  309 (429)
                      ++.+|..+..+++|+.|++++|.+++++...+.        ..++.+++++|.+..  + +..+..+++++.+++++|+
T Consensus       252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            999999999999999999999999987765542        348899999999875  3 4678888999999999874

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=9.7e-30  Score=236.03  Aligned_cols=279  Identities=27%  Similarity=0.357  Sum_probs=218.3

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhh
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l   87 (429)
                      .++.+++++++++.+|..++               +++++|++++|.++.++. .|.++++|++|++++|.++.+ |.++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~~---------------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   98 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEIS---------------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAF   98 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGS
T ss_pred             cCCEEECCCCCccccCCCCC---------------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHh
Confidence            57888888888888887653               358888998888887754 688888999999988888866 5678


Q ss_pred             hCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccc---cCCccccccCCCc
Q 014200           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (429)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~l~~~~~L~  163 (429)
                      .++++|++|++++|.+..+|..+.  ++|++|++++|++..++. .+..+++|++|++++|.++   ..+..+..+ +|+
T Consensus        99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~  175 (332)
T 2ft3_A           99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN  175 (332)
T ss_dssp             TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS
T ss_pred             hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC
Confidence            888899999998888888877654  788899998888887765 4778888999999888876   334555555 888


Q ss_pred             EEEccCCcccccChhhhhcccccceeecCCccCCcCC-ccccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCC
Q 014200          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA  241 (429)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~  241 (429)
                      .|++++|.+..++...   .++|++|++++|.++.++ ..+..+++|+.|++++|.+..++ ..+..+++|++|++++|.
T Consensus       176 ~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          176 YLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             CCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             EEECcCCCCCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence            8888888888776542   268888888888887764 56788888999999988888765 467888889999999888


Q ss_pred             CCccChhhcCCCCCCEEECCCCcCccccchhhc--------cccCEEEccCCCCC--C-CCccccCCCCCCEEEccCCC
Q 014200          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--------LRLSVLDLSNNSLS--G-LPPEIGKMTTLRKLLLTGNP  309 (429)
Q Consensus       242 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--------~~L~~l~l~~n~l~--~-l~~~l~~~~~L~~L~l~~~~  309 (429)
                      ++.+|..+..+++|+.|++++|.++.++...+.        ..++.+++++|.+.  . .+..+..+++|+.+++++|+
T Consensus       253 l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          253 LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            888888888888999999999888877654432        33788888888877  3 34567888888888888774

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=4.8e-29  Score=251.68  Aligned_cols=337  Identities=20%  Similarity=0.243  Sum_probs=227.2

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hh
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AI   87 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l   87 (429)
                      ++++|||++|+|+.+|+..|..            +++|++|++++|.++.++. +|+++++|++|++++|.++.+|. +|
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~------------l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f  120 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFS------------FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF  120 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTT------------CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred             CCCEEEeeCCCCCCCCHHHHhC------------CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence            4666666666666666665554            6667888887777777765 47777788888888777777654 67


Q ss_pred             hCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCc--CCccccCCCCCCEEEcCCCccccCC-ccccc-----
Q 014200           88 GELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKE--LPSSLGRCLNLSDFKASNNCITSLP-EDLAD-----  158 (429)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~-----  158 (429)
                      .++++|++|++++|.++.+++. ++++++|++|++++|.+..  +|..+..+++|++|++++|.++.++ ..+..     
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  200 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence            7777888888877777776553 6777778888877777763  3556667777777777776654221 11100     


Q ss_pred             --------------------------------------------------------------------------------
Q 014200          159 --------------------------------------------------------------------------------  158 (429)
Q Consensus       159 --------------------------------------------------------------------------------  158 (429)
                                                                                                      
T Consensus       201 ~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  280 (635)
T 4g8a_A          201 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN  280 (635)
T ss_dssp             TCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGG
T ss_pred             hhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccc
Confidence                                                                                            


Q ss_pred             ----------------------------------------------cCCCcEEEccCCcccccChh--------------
Q 014200          159 ----------------------------------------------CSKMSKLDVEGNKLTVLSNN--------------  178 (429)
Q Consensus       159 ----------------------------------------------~~~L~~L~l~~~~~~~~~~~--------------  178 (429)
                                                                    ...++.+++.++.+..+...              
T Consensus       281 l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~  360 (635)
T 4g8a_A          281 LTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK  360 (635)
T ss_dssp             SEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCC
T ss_pred             hhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccccc
Confidence                                                          01122222222211111000              


Q ss_pred             -----hhhcccccceeecCCccCCc--------------------------CCccccCCccCCeEeccCCcCccC--Ccc
Q 014200          179 -----LIASWTMLTELIASKNLLNG--------------------------MPETIGSLSRLIRLDLHQNRILSI--PSS  225 (429)
Q Consensus       179 -----~~~~~~~L~~L~l~~~~l~~--------------------------~~~~~~~~~~L~~L~l~~~~~~~~--~~~  225 (429)
                           ....++.++.++++.|.+..                          .+..+..+++++.+++..+.....  ...
T Consensus       361 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~  440 (635)
T 4g8a_A          361 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV  440 (635)
T ss_dssp             SCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred             CCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccc
Confidence                 00123445555555554421                          122334455666666666655433  245


Q ss_pred             ccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCc-cccchh--hccccCEEEccCCCCCCC-CccccCCCCC
Q 014200          226 ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLK-EYCVEA--CQLRLSVLDLSNNSLSGL-PPEIGKMTTL  300 (429)
Q Consensus       226 ~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~-~~~~~~--~~~~L~~l~l~~n~l~~l-~~~l~~~~~L  300 (429)
                      +..+++++.++++.|.+... +..+..+++++.|++++|.+. .+.+..  ...+|++|++++|+++++ |..+.++++|
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            77889999999999999855 566788999999999999754 333322  224599999999999995 6679999999


Q ss_pred             CEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC-Chhhhcc
Q 014200          301 RKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEA  379 (429)
Q Consensus       301 ~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~-~~~~~~~  379 (429)
                      +.|++++|.++.++...|.+                                   .++|+.|++++|+|+.+ |..+..+
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~-----------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~l  565 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKC-----------------------------------LNSLQVLDYSLNHIMTSKKQELQHF  565 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTT-----------------------------------CTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred             CEEECCCCcCCCCChhHHhC-----------------------------------CCCCCEEECCCCcCCCCCHHHHHhh
Confidence            99999999998877655543                                   25899999999999965 5566676


Q ss_pred             -CCCcEEeCCCCccc
Q 014200          380 -GEITKLDLSRNSIQ  393 (429)
Q Consensus       380 -~~L~~L~ls~n~i~  393 (429)
                       ++|++|+|++|.+.
T Consensus       566 ~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          566 PSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CTTCCEEECTTCCBC
T ss_pred             hCcCCEEEeeCCCCc
Confidence             68999999999876

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.2e-29  Score=235.38  Aligned_cols=247  Identities=24%  Similarity=0.341  Sum_probs=163.6

Q ss_pred             CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCC
Q 014200           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS  123 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~  123 (429)
                      +++.++++++.++.+|..+  .++++.|++++|.++.++ ..+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            5778888888887777655  357888888888877664 3677888888888888877765 55677778888888888


Q ss_pred             CCCCcCCccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcc
Q 014200          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (429)
Q Consensus       124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  202 (429)
                      |++..+|..+.  ++|++|++++|.++.++. .+..+++|+.|++++|.+...+                     ..+..
T Consensus       112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------------~~~~~  168 (332)
T 2ft3_A          112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG---------------------FEPGA  168 (332)
T ss_dssp             SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG---------------------SCTTS
T ss_pred             CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC---------------------CCccc
Confidence            77777766554  677777777777765543 3566677777777766654211                     11222


Q ss_pred             ccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccC-hhhcCCCCCCEEECCCCcCccccchh--hccccCE
Q 014200          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEA--CQLRLSV  279 (429)
Q Consensus       203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~L~~  279 (429)
                      +..+ +|+.|++++|.++.+|..+.  ++|++|++++|.++.++ ..+..+++|+.|++++|.+++++...  ...+|++
T Consensus       169 ~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  245 (332)
T 2ft3_A          169 FDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE  245 (332)
T ss_dssp             SCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCE
T ss_pred             ccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCE
Confidence            2233 45555555555555544332  45666666666666553 45666666666666666666555422  2234777


Q ss_pred             EEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCC
Q 014200          280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG  320 (429)
Q Consensus       280 l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~  320 (429)
                      |++++|.++.+|..+..+++|+.|++++|.+++++...|.+
T Consensus       246 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~  286 (332)
T 2ft3_A          246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP  286 (332)
T ss_dssp             EECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred             EECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccc
Confidence            77777777778888888889999999999888776655543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=7.7e-28  Score=238.87  Aligned_cols=291  Identities=27%  Similarity=0.283  Sum_probs=239.7

Q ss_pred             CCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCC
Q 014200           68 PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNN  147 (429)
Q Consensus        68 ~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~  147 (429)
                      .+++.|+++++.++.+|..+.  ++|++|++++|.++.+|.   .+++|++|++++|+++.+|.   .+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence            468999999999999988664  899999999999998887   57899999999999998887   6789999999999


Q ss_pred             ccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCcccc
Q 014200          148 CITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS  227 (429)
Q Consensus       148 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  227 (429)
                      .++.+|.   ..++|+.|++++|.++.++..    +++|++|++++|.++.+|.   .+++|+.|++++|.++.+|   .
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~---~  178 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP---M  178 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC---C
T ss_pred             cCCCCCC---CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc---c
Confidence            9998876   568899999999999887753    4889999999999988875   3478999999999999887   5


Q ss_pred             ccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccC
Q 014200          228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG  307 (429)
Q Consensus       228 ~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~  307 (429)
                      .+++|+.|++++|.++.+|..   .++|+.|++++|.++.++..  ..+|+.|++++|.++++|   ..+++|+.|++++
T Consensus       179 ~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~  250 (622)
T 3g06_A          179 LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP---VLPSELKELMVSG  250 (622)
T ss_dssp             CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred             cCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC---CCCCcCcEEECCC
Confidence            578999999999999988753   47899999999999987753  356999999999999988   4568999999999


Q ss_pred             CCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeC
Q 014200          308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL  387 (429)
Q Consensus       308 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~l  387 (429)
                      |.++.++..                                       +++|+.|++++|+|+.+|..+..+++|+.|+|
T Consensus       251 N~L~~lp~~---------------------------------------~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          251 NRLTSLPML---------------------------------------PSGLLSLSVYRNQLTRLPESLIHLSSETTVNL  291 (622)
T ss_dssp             SCCSCCCCC---------------------------------------CTTCCEEECCSSCCCSCCGGGGGSCTTCEEEC
T ss_pred             CCCCcCCcc---------------------------------------cccCcEEeCCCCCCCcCCHHHhhccccCEEEe
Confidence            999876640                                       24789999999999999999999999999999


Q ss_pred             CCCcccc-CChhhccccc-------ceeeccccCCCcccc----ccccccccc
Q 014200          388 SRNSIQE-LPPELSSCAS-------LQVKFSDLVTNKESC----ISGCYLYWN  428 (429)
Q Consensus       388 s~n~i~~-~~~~l~~l~~-------L~~L~~~l~~n~i~~----i~~~~~~~~  428 (429)
                      ++|.+++ .|..+..+++       +..++  ++++++..    .++|...|.
T Consensus       292 ~~N~l~~~~~~~l~~L~~~~~~~g~~~~~~--~~~~~~~~~~~pl~~~~~~Wf  342 (622)
T 3g06_A          292 EGNPLSERTLQALREITSAPGYSGPIIRFD--MAGASAPRETRALHLAAADWL  342 (622)
T ss_dssp             CSCCCCHHHHHHHHHHHHSTTCCSCEEECC--SCCC----CCCCHHHHHHTTC
T ss_pred             cCCCCCCcCHHHHHhcccccccCCCceeee--cCCCcccccccccccchhhhc
Confidence            9999988 6666654443       23344  66544322    345666664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=3.3e-27  Score=234.39  Aligned_cols=261  Identities=30%  Similarity=0.364  Sum_probs=231.3

Q ss_pred             HhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchh
Q 014200            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (429)
Q Consensus         7 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~   86 (429)
                      ....++.|++++++++++|..++               ++|++|++++|.++.+|.   .+++|++|++++|.++.+|. 
T Consensus        38 ~~~~l~~L~ls~n~L~~lp~~l~---------------~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-   98 (622)
T 3g06_A           38 LNNGNAVLNVGESGLTTLPDCLP---------------AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV-   98 (622)
T ss_dssp             HHHCCCEEECCSSCCSCCCSCCC---------------TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-
T ss_pred             cCCCCcEEEecCCCcCccChhhC---------------CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-
Confidence            34568999999999999998664               459999999999999986   67899999999999998887 


Q ss_pred             hhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEE
Q 014200           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD  166 (429)
Q Consensus        87 l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~  166 (429)
                        .+++|++|++++|.+..+|.   .+++|++|++++|++..+|..   +++|++|++++|.++.+|..   ..+|+.|+
T Consensus        99 --~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~  167 (622)
T 3g06_A           99 --LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLW  167 (622)
T ss_dssp             --CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEE
T ss_pred             --CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEE
Confidence              78999999999999998877   578999999999999998874   48999999999999987753   47899999


Q ss_pred             ccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccC
Q 014200          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP  246 (429)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  246 (429)
                      +++|.++.++    ..+++|+.|++++|.++.+|..   +++|+.|++++|.++.++..   +++|+.|++++|.++.+|
T Consensus       168 L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp  237 (622)
T 3g06_A          168 AYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP  237 (622)
T ss_dssp             CCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC
T ss_pred             CCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC
Confidence            9999999877    4568999999999999988763   47899999999999988753   488999999999999988


Q ss_pred             hhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCC
Q 014200          247 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (429)
Q Consensus       247 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~  312 (429)
                         ..+++|+.|++++|.++.++.  ...+|+.|++++|.++.+|..+.++++|+.|++++|++++
T Consensus       238 ---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          238 ---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             ---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence               567899999999999998877  5567999999999999999999999999999999999853

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=2e-30  Score=251.81  Aligned_cols=342  Identities=20%  Similarity=0.187  Sum_probs=256.9

Q ss_pred             CCccEEEcCCCCCCccch--hccCCCCCCEEECCCCCCC-----CcchhhhCCCCCcEeecCCCcCccC-C-ccccCCC-
Q 014200           45 VDLQKLILAHNNIEKLKE--DLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMKI-P-DEIGSAT-  114 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~i~~l-~-~~~~~~~-  114 (429)
                      +++++|+++++.++..+.  .+..+++|++|++++|.++     .++..+..+++|++|++++|.+... + .....++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            568999999999885442  3788999999999999988     4567888999999999999988742 2 2233344 


Q ss_pred             ---CcCEEecCCCCCC-----cCCccccCCCCCCEEEcCCCccccC-Cc----c-ccccCCCcEEEccCCcccccC----
Q 014200          115 ---ALVKFDCSSNQLK-----ELPSSLGRCLNLSDFKASNNCITSL-PE----D-LADCSKMSKLDVEGNKLTVLS----  176 (429)
Q Consensus       115 ---~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~-~~----~-l~~~~~L~~L~l~~~~~~~~~----  176 (429)
                         +|++|++++|++.     .++..+..+++|++|++++|.++.. +.    . ....++|++|++++|.++...    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               7999999999988     3467788999999999999988732 11    1 222468999999999888654    


Q ss_pred             hhhhhcccccceeecCCccCCcC-Cccc-----cCCccCCeEeccCCcCcc-----CCccccccCCCcEEEcCCCCCCcc
Q 014200          177 NNLIASWTMLTELIASKNLLNGM-PETI-----GSLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALSAL  245 (429)
Q Consensus       177 ~~~~~~~~~L~~L~l~~~~l~~~-~~~~-----~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~~  245 (429)
                      ...+..+++|++|++++|.+... +..+     ...++|+.|++++|.++.     ++..+..+++|++|++++|.++..
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  242 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV  242 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence            23356679999999999988542 1111     135689999999999885     466778899999999999988742


Q ss_pred             -----Chh-hcCCCCCCEEECCCCcCccc-----cchhh-ccccCEEEccCCCCCCC-----Cccc-cCCCCCCEEEccC
Q 014200          246 -----PAE-LGKLSKLGTLDLHSNQLKEY-----CVEAC-QLRLSVLDLSNNSLSGL-----PPEI-GKMTTLRKLLLTG  307 (429)
Q Consensus       246 -----~~~-~~~~~~L~~L~l~~n~l~~~-----~~~~~-~~~L~~l~l~~n~l~~l-----~~~l-~~~~~L~~L~l~~  307 (429)
                           .+. +..+++|++|++++|.++..     +.... ..+|++|++++|.+++.     ...+ ...++|+.|++++
T Consensus       243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~  322 (461)
T 1z7x_W          243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS  322 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence                 222 34689999999999998863     33222 34599999999988752     2222 2336999999999


Q ss_pred             CCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC-Chhhhc-----cCC
Q 014200          308 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWE-----AGE  381 (429)
Q Consensus       308 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~-~~~~~~-----~~~  381 (429)
                      |.++......                               ........++|++|++++|.++.. +..+..     +++
T Consensus       323 n~l~~~~~~~-------------------------------l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~  371 (461)
T 1z7x_W          323 CSFTAACCSH-------------------------------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV  371 (461)
T ss_dssp             SCCBGGGHHH-------------------------------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred             CCCchHHHHH-------------------------------HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence            9885422110                               111222346899999999999832 333332     679


Q ss_pred             CcEEeCCCCccc-----cCChhhcccccceeeccccCCCcccc
Q 014200          382 ITKLDLSRNSIQ-----ELPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       382 L~~L~ls~n~i~-----~~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      |++|++++|+++     .+|+.+..+++|++|+  +++|+|++
T Consensus       372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~--l~~N~i~~  412 (461)
T 1z7x_W          372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELD--LSNNCLGD  412 (461)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE--CCSSSCCH
T ss_pred             eEEEECCCCCCChhhHHHHHHHHHhCCCccEEE--CCCCCCCH
Confidence            999999999998     3888899999999999  99999987

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.4e-27  Score=220.78  Aligned_cols=274  Identities=20%  Similarity=0.265  Sum_probs=155.3

Q ss_pred             CCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcC
Q 014200           67 LPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKAS  145 (429)
Q Consensus        67 ~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~  145 (429)
                      |+.....+++++.++.+|..+.  ++|++|++++|.+..++. .+.++++|++|++++|.+..++               
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---------------   92 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE---------------   92 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---------------
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC---------------
Confidence            4444445555555555554332  355555555555554433 3445555555555555444332               


Q ss_pred             CCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc--cccCCccCCeEeccCC-cCccC
Q 014200          146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE--TIGSLSRLIRLDLHQN-RILSI  222 (429)
Q Consensus       146 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~-~~~~~  222 (429)
                             +..+..+++|++|++++|.+..++...+..+++|++|++++|.++.++.  .+..+++|+.|++++| .+..+
T Consensus        93 -------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~  165 (353)
T 2z80_A           93 -------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI  165 (353)
T ss_dssp             -------TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             -------HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc
Confidence                   2234444555555555555555444444555555555555555555543  4556666777777666 34444


Q ss_pred             -CccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhh--ccccCEEEccCCCCCCCCcc----c
Q 014200          223 -PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPE----I  294 (429)
Q Consensus       223 -~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~l~l~~n~l~~l~~~----l  294 (429)
                       +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+..++....  ..+|++|++++|.+++++..    .
T Consensus       166 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  245 (353)
T 2z80_A          166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG  245 (353)
T ss_dssp             CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----
T ss_pred             CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc
Confidence             34566677777777777766654 5566666677777776666655544322  23466666666655553211    1


Q ss_pred             cCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCCh
Q 014200          295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS  374 (429)
Q Consensus       295 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~  374 (429)
                      ..++.++.++++                                                      .+.++++.+..+|.
T Consensus       246 ~~~~~l~~l~L~------------------------------------------------------~~~l~~~~l~~l~~  271 (353)
T 2z80_A          246 ETNSLIKKFTFR------------------------------------------------------NVKITDESLFQVMK  271 (353)
T ss_dssp             -CCCCCCEEEEE------------------------------------------------------SCBCCHHHHHHHHH
T ss_pred             cccchhhccccc------------------------------------------------------cccccCcchhhhHH
Confidence            112233333333                                                      33333444445677


Q ss_pred             hhhccCCCcEEeCCCCccccCChhh-cccccceeeccccCCCccccc
Q 014200          375 EIWEAGEITKLDLSRNSIQELPPEL-SSCASLQVKFSDLVTNKESCI  420 (429)
Q Consensus       375 ~~~~~~~L~~L~ls~n~i~~~~~~l-~~l~~L~~L~~~l~~n~i~~i  420 (429)
                      .+..+++|++|++++|+++.+|..+ ..+++|++|+  +++|++++-
T Consensus       272 ~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~--L~~N~~~~~  316 (353)
T 2z80_A          272 LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW--LHTNPWDCS  316 (353)
T ss_dssp             HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCBCCC
T ss_pred             HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE--eeCCCccCc
Confidence            7778888888888888888877764 7788888888  888888873

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=4.6e-27  Score=215.84  Aligned_cols=243  Identities=24%  Similarity=0.339  Sum_probs=173.0

Q ss_pred             CCCEEEcCCCccc---cCCccccccCCCcEEEccC-CcccccChhhhhcccccceeecCCccCC-cCCccccCCccCCeE
Q 014200          138 NLSDFKASNNCIT---SLPEDLADCSKMSKLDVEG-NKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRL  212 (429)
Q Consensus       138 ~L~~L~l~~~~~~---~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L  212 (429)
                      ++++|+++++.+.   .+|..+..+++|++|++++ |.+....+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  130 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence            3445555555444   2445555555555555552 4444333333555566666666666664 455566667777777


Q ss_pred             eccCCcCc-cCCccccccCCCcEEEcCCCCCC-ccChhhcCCC-CCCEEECCCCcCcc-ccchhhccccCEEEccCCCCC
Q 014200          213 DLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLS-KLGTLDLHSNQLKE-YCVEACQLRLSVLDLSNNSLS  288 (429)
Q Consensus       213 ~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~-~L~~L~l~~n~l~~-~~~~~~~~~L~~l~l~~n~l~  288 (429)
                      ++++|.+. .+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+++ ++.......|++|++++|.++
T Consensus       131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~  210 (313)
T 1ogq_A          131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCccc
Confidence            77777776 55667777778888888888777 6677777776 78888888887773 333333444888888888887


Q ss_pred             C-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCC
Q 014200          289 G-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGM  367 (429)
Q Consensus       289 ~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~  367 (429)
                      + .+..+..+++|+.|++++|.++..... +                                   ...++|++|++++|
T Consensus       211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~-----------------------------------~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-V-----------------------------------GLSKNLNGLDLRNN  254 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBGGG-C-----------------------------------CCCTTCCEEECCSS
T ss_pred             CcCCHHHhcCCCCCEEECCCCceeeecCc-c-----------------------------------cccCCCCEEECcCC
Confidence            6 566788999999999999988643222 1                                   12358899999999


Q ss_pred             ccc-cCChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200          368 NLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       368 ~i~-~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      .++ .+|..+..+++|++|++++|++++ +|+. ..+++|+.++  +++|+.-+
T Consensus       255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~--l~~N~~lc  305 (313)
T 1ogq_A          255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA--YANNKCLC  305 (313)
T ss_dssp             CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGG--TCSSSEEE
T ss_pred             cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHH--hcCCCCcc
Confidence            999 899999999999999999999997 8876 8999999999  99999444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1.2e-28  Score=246.91  Aligned_cols=410  Identities=14%  Similarity=0.082  Sum_probs=235.8

Q ss_pred             hHHHHHhhhcCeeeccCCCC----ccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCc-cchhccC-CCC-CCEEE
Q 014200            2 DRILKAARTSGSLNLSNRSL----RDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKEDLRN-LPL-LTVLN   74 (429)
Q Consensus         2 ~~~~~~~~~l~~L~l~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~-~~~-L~~L~   74 (429)
                      +.++..++.+++|+++++.-    ..+|...-. +..-.-......+++|++|+++++.++. .+..+.. +++ |++|+
T Consensus        66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~  144 (592)
T 3ogk_B           66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGG-YVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK  144 (592)
T ss_dssp             HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCC-BCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred             HHHHHhCCCCeEEEecCCcchhhcccccccccc-cchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence            35677778888888877431    122211000 0000000001136778888888776662 2223333 344 88888


Q ss_pred             CCCCC-CC--CcchhhhCCCCCcEeecCCCcCccC-----CccccCCCCcCEEecCCCCCC-----cCCccccCCCCCCE
Q 014200           75 VSHNK-LS--ELPAAIGELHMLKSLDVSFNSIMKI-----PDEIGSATALVKFDCSSNQLK-----ELPSSLGRCLNLSD  141 (429)
Q Consensus        75 l~~~~-i~--~~~~~l~~l~~L~~L~l~~~~i~~l-----~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~  141 (429)
                      +++|. +.  .++....++++|++|++++|.+...     +.....+++|++|+++++.+.     .++..+..+++|++
T Consensus       145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~  224 (592)
T 3ogk_B          145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS  224 (592)
T ss_dssp             EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred             CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence            87775 22  2233345778888888888765422     223456778888888777765     22334456778888


Q ss_pred             EEcCCCccccCCccccccCCCcEEEccCCccc---ccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCc
Q 014200          142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLT---VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (429)
Q Consensus       142 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  218 (429)
                      |++++|.+..++..+..+++|+.++++.....   ......+..+++|+.+.++++....+|..+..+++|++|++++|.
T Consensus       225 L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~  304 (592)
T 3ogk_B          225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL  304 (592)
T ss_dssp             EECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred             EeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence            88888777776666777778888777642111   001112445566777777665555566666667777777777776


Q ss_pred             Ccc--CCccccccCCCcEEEcCCCCCC--ccChhhcCCCCCCEEECCC-----------CcCccccch---hhccccCEE
Q 014200          219 ILS--IPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHS-----------NQLKEYCVE---ACQLRLSVL  280 (429)
Q Consensus       219 ~~~--~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~-----------n~l~~~~~~---~~~~~L~~l  280 (429)
                      ++.  +...+..+++|++|+++ +.++  .++.....+++|++|++++           +.++.....   ...++|++|
T Consensus       305 l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L  383 (592)
T 3ogk_B          305 LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM  383 (592)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEE
T ss_pred             CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEE
Confidence            542  12334667777777776 3333  2333345667777777772           344422111   123457777


Q ss_pred             EccCCCCCC-CCcccc-CCCCCCEEEcc----CCCCCCccccccCCCcHHHHHHHHhcCCCCCccc-ccCChhhHHhhhh
Q 014200          281 DLSNNSLSG-LPPEIG-KMTTLRKLLLT----GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE-ASTTKEDLITMAT  353 (429)
Q Consensus       281 ~l~~n~l~~-l~~~l~-~~~~L~~L~l~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  353 (429)
                      ++..+.+++ .+..+. .+++|+.|+++    .+.+++.+..   ...+..+.. ...+....++. .............
T Consensus       384 ~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~---~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~  459 (592)
T 3ogk_B          384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD---NGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIG  459 (592)
T ss_dssp             EEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH---HHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred             EeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH---HHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHH
Confidence            776666665 222233 36677777775    3344332210   001111111 11111111111 1112233333344


Q ss_pred             ccccccccccccCCccc--cCChhhhccCCCcEEeCCCCcccc--CChhhcccccceeeccccCCCcccc
Q 014200          354 RLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       354 ~~~~~L~~l~l~~~~i~--~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      ..+++|+.|++++|+++  .++..+..+++|++|+|++|.+++  ++.....+++|++|+  +++|++++
T Consensus       460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~--ls~n~it~  527 (592)
T 3ogk_B          460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW--VQGYRASM  527 (592)
T ss_dssp             HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE--EESCBCCT
T ss_pred             HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE--CcCCcCCH
Confidence            45678999999999988  456666789999999999999986  666667899999999  99999987

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=6.2e-27  Score=214.97  Aligned_cols=244  Identities=27%  Similarity=0.353  Sum_probs=210.7

Q ss_pred             CCccEEEcCCCCCC---ccchhccCCCCCCEEECCC-CCCC-CcchhhhCCCCCcEeecCCCcCc-cCCccccCCCCcCE
Q 014200           45 VDLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIM-KIPDEIGSATALVK  118 (429)
Q Consensus        45 ~~L~~L~l~~~~i~---~l~~~~~~~~~L~~L~l~~-~~i~-~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~  118 (429)
                      .++++|+++++.+.   .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            46999999999988   4788899999999999995 7766 67889999999999999999988 77888999999999


Q ss_pred             EecCCCCCC-cCCccccCCCCCCEEEcCCCccc-cCCccccccC-CCcEEEccCCcccccChhhhhcccccceeecCCcc
Q 014200          119 FDCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCS-KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (429)
Q Consensus       119 L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  195 (429)
                      |++++|.+. .+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+....+..+..+. |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            999999988 67888999999999999999998 7888888887 999999999998865555577776 9999999999


Q ss_pred             CCc-CCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCcc-ccchh
Q 014200          196 LNG-MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKE-YCVEA  272 (429)
Q Consensus       196 l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~  272 (429)
                      ++. .|..+..+++|+.|++++|.+...+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++ ++...
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~  288 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG  288 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence            974 567788999999999999999866666888999999999999998 778899999999999999999984 44443


Q ss_pred             hccccCEEEccCCC-CCC
Q 014200          273 CQLRLSVLDLSNNS-LSG  289 (429)
Q Consensus       273 ~~~~L~~l~l~~n~-l~~  289 (429)
                      ...+|+.+++++|. +.+
T Consensus       289 ~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          289 NLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TGGGSCGGGTCSSSEEES
T ss_pred             cccccChHHhcCCCCccC
Confidence            34459999999986 444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=1.7e-26  Score=211.74  Aligned_cols=196  Identities=21%  Similarity=0.273  Sum_probs=139.7

Q ss_pred             CEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCcccccC--hhhhhcccccceeecCC
Q 014200          117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLS--NNLIASWTMLTELIASK  193 (429)
Q Consensus       117 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~  193 (429)
                      +.++++++.++.+|..+.  +++++|++++|.++.++.. +..+++|+.|++++|.+...+  ...+..+++|++|++++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~   87 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF   87 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence            467888888888887553  5888999999888877654 678888999999888877543  23355678888888888


Q ss_pred             ccCCcCCccccCCccCCeEeccCCcCccCC--ccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCcc--c
Q 014200          194 NLLNGMPETIGSLSRLIRLDLHQNRILSIP--SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE--Y  268 (429)
Q Consensus       194 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~--~  268 (429)
                      |.+..++..+..+++|+.|++++|.+..++  ..+..+++|++|++++|.++.. +..+..+++|++|++++|.+.+  +
T Consensus        88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred             CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence            888777777777888888888888877665  3677778888888888877744 4556777788888888777664  2


Q ss_pred             cchhh-ccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCcc
Q 014200          269 CVEAC-QLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLR  314 (429)
Q Consensus       269 ~~~~~-~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~  314 (429)
                      +.... ..+|++|++++|.++++ +..+..+++|+.|++++|.+++++
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence            22221 22467777777766664 455666666666666666665543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=215.20  Aligned_cols=266  Identities=20%  Similarity=0.231  Sum_probs=167.3

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCC-ccccCCCCcCEEec
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC  121 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l  121 (429)
                      |+.....+.+++.++.+|..+.  ++|++|++++|.++.++. .+.++++|++|++++|.+..++ ..+.++++|++|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL  107 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence            3444445556666666655433  356666666666665544 5566666666666666665442 34556666666666


Q ss_pred             CCCCCCcCCcc-ccCCCCCCEEEcCCCccccCCc--cccccCCCcEEEccCC-cccccChhhhhcccccceeecCCccCC
Q 014200          122 SSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGN-KLTVLSNNLIASWTMLTELIASKNLLN  197 (429)
Q Consensus       122 ~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~  197 (429)
                      ++|++..++.. +..+++|++|++++|.++.++.  .+..+++|+.|++++| .+..++...+..+++|+++++++|.++
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            66666655543 5556666666666666665554  4556666666666666 355555555666667777777777665


Q ss_pred             cC-CccccCCccCCeEeccCCcCccCCcc-ccccCCCcEEEcCCCCCCccCh----hhcCCCCCCEEECCCCcCcc----
Q 014200          198 GM-PETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSALPA----ELGKLSKLGTLDLHSNQLKE----  267 (429)
Q Consensus       198 ~~-~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~----~~~~~~~L~~L~l~~n~l~~----  267 (429)
                      .. |..+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.    .......++.+++.++.+.+    
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence            44 55666677777777777777655543 3446777777777777765431    12345667777777777664    


Q ss_pred             -ccchh-hccccCEEEccCCCCCCCCcc-ccCCCCCCEEEccCCCCC
Q 014200          268 -YCVEA-CQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLR  311 (429)
Q Consensus       268 -~~~~~-~~~~L~~l~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~i~  311 (429)
                       ++... ...+|++|++++|.++.+|.. +.++++|+.|++++|++.
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence             22221 123588888888888888776 488999999999999874

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=216.83  Aligned_cols=247  Identities=24%  Similarity=0.337  Sum_probs=145.9

Q ss_pred             CEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCcc
Q 014200          117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (429)
Q Consensus       117 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  195 (429)
                      +.++..+..+..+|..+.  ++++.|++++|.++.++ ..|..+++|+.|++++|.+..++...+.++++|++|++++|.
T Consensus        46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            445555555555555442  45566666666655432 445666666666666666666665556666666666666666


Q ss_pred             CCcCCc-cccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCC-CCCccCh-hhcCCCCCCEEECCCCcCccccch
Q 014200          196 LNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNN-ALSALPA-ELGKLSKLGTLDLHSNQLKEYCVE  271 (429)
Q Consensus       196 l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n-~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~  271 (429)
                      ++.++. .+..+++|+.|++++|.+..++ ..+..+++|++|++++| .++.++. .+..+++|+.|++++|.++.++..
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~  203 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL  203 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc
Confidence            655543 4556666666666666666554 35566666666666663 4444433 456666666666666666555433


Q ss_pred             hhccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHh
Q 014200          272 ACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (429)
Q Consensus       272 ~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (429)
                      ....+|++|++++|.++++ +..+.++++|+.|                                               
T Consensus       204 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-----------------------------------------------  236 (440)
T 3zyj_A          204 TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL-----------------------------------------------  236 (440)
T ss_dssp             TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEE-----------------------------------------------
T ss_pred             CCCcccCEEECCCCccCccChhhhccCccCCEE-----------------------------------------------
Confidence            3333355555555554443 3344444445444                                               


Q ss_pred             hhhccccccccccccCCccccC-ChhhhccCCCcEEeCCCCccccCC-hhhcccccceeeccccCCCccccccccccccc
Q 014200          351 MATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQVKFSDLVTNKESCISGCYLYWN  428 (429)
Q Consensus       351 ~~~~~~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~~~-~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~  428 (429)
                                  ++++|+++.+ +..+..+++|++|+|++|+++++| ..+..+++|++|+  +++|++.|  +|-+.|.
T Consensus       237 ------------~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~Np~~C--dC~l~~l  300 (440)
T 3zyj_A          237 ------------WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIH--LHHNPWNC--NCDILWL  300 (440)
T ss_dssp             ------------ECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEE--CCSSCEEC--SSTTHHH
T ss_pred             ------------ECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEE--cCCCCccC--CCCchHH
Confidence                        4444444433 334556777888888888887744 4456778888888  88888877  6766663

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=5.3e-26  Score=208.38  Aligned_cols=241  Identities=23%  Similarity=0.291  Sum_probs=145.5

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchh-ccCCCCCCEEECCCCCCCCc---chhh
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LRNLPLLTVLNVSHNKLSEL---PAAI   87 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~i~~~---~~~l   87 (429)
                      +.+++++++++++|...+               +++++|+++++.++.++.. |.++++|++|++++|.++.+   +..+
T Consensus        10 ~~l~c~~~~l~~ip~~~~---------------~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~   74 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP---------------SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD   74 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC---------------TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH
T ss_pred             CEEEcCCCCcccCCCCCC---------------CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc
Confidence            467777777777776553               3477888888877777764 67778888888888777644   4566


Q ss_pred             hCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc--cccCCCCCCEEEcCCCcccc-CCccccccCCCcE
Q 014200           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITS-LPEDLADCSKMSK  164 (429)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~l~~~~~L~~  164 (429)
                      ..+++|++|++++|.+..+|..+..+++|++|++++|.+..++.  .+..+++|++|++++|.+.. .+..+..+++|+.
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  154 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV  154 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence            67777888888777777777667777777777777777665543  45666666666666666653 2344555566666


Q ss_pred             EEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCC
Q 014200          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS  243 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~  243 (429)
                      |++++|.+...                      ..|..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++
T Consensus       155 L~l~~n~l~~~----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  212 (306)
T 2z66_A          155 LKMAGNSFQEN----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF  212 (306)
T ss_dssp             EECTTCEEGGG----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred             EECCCCccccc----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC
Confidence            66666655430                      1233444445555555555555543 344455555555555555555


Q ss_pred             ccCh-hhcCCCCCCEEECCCCcCccccchhh---ccccCEEEccCCCCCC
Q 014200          244 ALPA-ELGKLSKLGTLDLHSNQLKEYCVEAC---QLRLSVLDLSNNSLSG  289 (429)
Q Consensus       244 ~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~l~l~~n~l~~  289 (429)
                      .++. .+..+++|+.|++++|.+.+......   +.+|++|++++|.++.
T Consensus       213 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          213 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            4432 34555555555555555554332211   1245556665555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=7.3e-26  Score=209.08  Aligned_cols=223  Identities=21%  Similarity=0.273  Sum_probs=179.8

Q ss_pred             CCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCC
Q 014200           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~  124 (429)
                      .++++|+++++.++.+|..+.++++|++|++++|.++.+|..+.++++|++|++++|.+..+|..+.++++|++|++++|
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n  160 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRAC  160 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCC
Confidence            57888888888888888878888888888888888888888888888888888888888888888888888888888875


Q ss_pred             CC-CcCCcccc---------CCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCc
Q 014200          125 QL-KELPSSLG---------RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN  194 (429)
Q Consensus       125 ~l-~~~~~~~~---------~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  194 (429)
                      .+ ..+|..+.         .+++|++|++++|.++.+|..+..+++|+.|++++|.+..++.. +..+++|++|++++|
T Consensus       161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~Ls~n  239 (328)
T 4fcg_A          161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGC  239 (328)
T ss_dssp             TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEECTTC
T ss_pred             CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEECcCC
Confidence            44 35665544         37888888888888888888888888888888888888877664 778888888888887


Q ss_pred             cC-CcCCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCccc
Q 014200          195 LL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEY  268 (429)
Q Consensus       195 ~l-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~~~  268 (429)
                      .+ ..+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++++.+++..+.+..+
T Consensus       240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence            66 456777888888888888887655 66777888888888888887554 6788888888888888887765543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=3e-25  Score=214.58  Aligned_cols=248  Identities=22%  Similarity=0.314  Sum_probs=136.4

Q ss_pred             CEEecCCCCCCcCCccccCCCCCCEEEcCCCccccC-CccccccCCCcEEEccCCcccccChhhhhcccccceeecCCcc
Q 014200          117 VKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNL  195 (429)
Q Consensus       117 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  195 (429)
                      ..++..+..+..+|..+.  +++++|++++|.++.+ +..|..+++|+.|++++|.+..++...+.++++|++|++++|.
T Consensus        57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            344444444555544332  3455555555555533 3345555555555555555555554445555555555555555


Q ss_pred             CCcCCc-cccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCC-CCCccCh-hhcCCCCCCEEECCCCcCccccch
Q 014200          196 LNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNN-ALSALPA-ELGKLSKLGTLDLHSNQLKEYCVE  271 (429)
Q Consensus       196 l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n-~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~  271 (429)
                      ++.++. .+..+++|+.|++++|.+..++ ..+..+++|++|++++| .++.++. .+..+++|+.|++++|.++.++. 
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-  213 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-  213 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-
Confidence            554432 2445555566666655555443 24555566666666553 4444432 34555555555555555554433 


Q ss_pred             hhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhh
Q 014200          272 ACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (429)
Q Consensus       272 ~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (429)
                                            +..+++|+.|++++|.+++++...|.+                               
T Consensus       214 ----------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------  240 (452)
T 3zyi_A          214 ----------------------LTPLVGLEELEMSGNHFPEIRPGSFHG-------------------------------  240 (452)
T ss_dssp             ----------------------CTTCTTCCEEECTTSCCSEECGGGGTT-------------------------------
T ss_pred             ----------------------ccccccccEEECcCCcCcccCcccccC-------------------------------
Confidence                                  344445555555555554433222221                               


Q ss_pred             hhccccccccccccCCccccC-ChhhhccCCCcEEeCCCCccccCC-hhhcccccceeeccccCCCccccccccccccc
Q 014200          352 ATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQVKFSDLVTNKESCISGCYLYWN  428 (429)
Q Consensus       352 ~~~~~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~~~-~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~  428 (429)
                          .++|+.|++++|.++.+ +..+..+++|++|+|++|+++++| ..+..+++|++|+  +++|++.|  +|-+.|.
T Consensus       241 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~Np~~C--dC~~~~l  311 (452)
T 3zyi_A          241 ----LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELH--LHHNPWNC--DCDILWL  311 (452)
T ss_dssp             ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEE--CCSSCEEC--STTTHHH
T ss_pred             ----ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEE--ccCCCcCC--CCCchHH
Confidence                13455555555555533 445567788888888888888744 4466788888888  88888888  6666663

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=8.8e-26  Score=208.53  Aligned_cols=224  Identities=21%  Similarity=0.322  Sum_probs=200.4

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhh
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~   88 (429)
                      ..++.|++++++++.+|..++.             +++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+.
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~-------------l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~  147 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFR-------------LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA  147 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGG-------------GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred             cceeEEEccCCCchhcChhhhh-------------CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh
Confidence            7899999999999999887654             678999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEeecCCCc-CccCCcccc---------CCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccc
Q 014200           89 ELHMLKSLDVSFNS-IMKIPDEIG---------SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLAD  158 (429)
Q Consensus        89 ~l~~L~~L~l~~~~-i~~l~~~~~---------~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~  158 (429)
                      ++++|++|++++|. ...+|..+.         ++++|++|++++|++..+|..+..+++|++|++++|.++.++..+..
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~  227 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH  227 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG
T ss_pred             cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc
Confidence            99999999999974 456776654         49999999999999999999999999999999999999999989999


Q ss_pred             cCCCcEEEccCCcccccChhhhhcccccceeecCCccC-CcCCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEE
Q 014200          159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFY  236 (429)
Q Consensus       159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~  236 (429)
                      +++|+.|++++|.+....+..+..+++|++|++++|.+ ..+|..+..+++|+.|++++|.+. .+|..+..+++++.++
T Consensus       228 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~  307 (328)
T 4fcg_A          228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL  307 (328)
T ss_dssp             CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred             CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence            99999999999887766556688999999999999876 567888999999999999998765 7899999999999999


Q ss_pred             cCCCCCCcc
Q 014200          237 MGNNALSAL  245 (429)
Q Consensus       237 l~~n~i~~~  245 (429)
                      +..+.+..+
T Consensus       308 l~~~~~~~l  316 (328)
T 4fcg_A          308 VPPHLQAQL  316 (328)
T ss_dssp             CCGGGSCC-
T ss_pred             CCHHHHHHH
Confidence            987765543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=5.8e-25  Score=199.33  Aligned_cols=221  Identities=28%  Similarity=0.359  Sum_probs=127.7

Q ss_pred             CccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCc-CccC-CccccCCCCcCEEec
Q 014200           46 DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNS-IMKI-PDEIGSATALVKFDC  121 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~-i~~l-~~~~~~~~~L~~L~l  121 (429)
                      ++++|+++++.++.++. .|..+++|++|++++|.++.+ +..+.++++|++|++++|. +..+ +..+..+++|++|++
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l  112 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence            35555555555555443 355555555555555555544 3345555555555555553 4444 333444555555555


Q ss_pred             CCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc
Q 014200          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (429)
Q Consensus       122 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  201 (429)
                      ++|.+..++                      +..+..+++|++|++++|.+..++...+..+++|++|++++|.++.++.
T Consensus       113 ~~n~l~~~~----------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A          113 DRCGLQELG----------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTSCCCCCC----------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCCcCCEEC----------------------HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            555544332                      2334444555555555555554444444555555555555555555443


Q ss_pred             -cccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCccCh-hhcCCCCCCEEECCCCcCccccchh-hcccc
Q 014200          202 -TIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEA-CQLRL  277 (429)
Q Consensus       202 -~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~L  277 (429)
                       .+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+...+... ....+
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l  250 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL  250 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence             356677778888888877755 6677788888888888888887764 4788888889999888876433322 11124


Q ss_pred             CEEEccCCCCC
Q 014200          278 SVLDLSNNSLS  288 (429)
Q Consensus       278 ~~l~l~~n~l~  288 (429)
                      +.+....+.+.
T Consensus       251 ~~~~~~~~~~~  261 (285)
T 1ozn_A          251 QKFRGSSSEVP  261 (285)
T ss_dssp             HHCCSEECCCB
T ss_pred             HhcccccCccc
Confidence            44444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=208.77  Aligned_cols=239  Identities=24%  Similarity=0.356  Sum_probs=140.8

Q ss_pred             cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcc-hhhh
Q 014200           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIG   88 (429)
Q Consensus        11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~-~~l~   88 (429)
                      .+.+++++.+++.+|..++.               +++.|++++|.++.++ ..|.++++|++|++++|.+..++ .+|.
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~---------------~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~  109 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIST---------------NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN  109 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCT---------------TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGT
T ss_pred             CCEEEeCCCCcCcCCCCCCC---------------CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhcc
Confidence            34566666666666655432               3666666666666554 34666666666666666666554 3566


Q ss_pred             CCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCC-ccccCCc-cccccCCCcE
Q 014200           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSK  164 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~-~l~~~~~L~~  164 (429)
                      ++++|++|++++|.++.++. .+..+++|++|++++|++..++. .+..+++|++|+++++ .+..++. .+..+++|+.
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  189 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY  189 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence            66666666666666665544 35666666666666666665543 4556666666666653 3333332 3555666666


Q ss_pred             EEccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCC
Q 014200          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNAL  242 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i  242 (429)
                      |++++|.+..++.  +..+++|++|++++|.++.+ +..+..+++|+.|++++|.+..+ +.++..+++|++|++++|.+
T Consensus       190 L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          190 LNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             EECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            6666666665543  45556666666666666544 44555566666666666666544 34455566666666666666


Q ss_pred             CccCh-hhcCCCCCCEEECCCCcCc
Q 014200          243 SALPA-ELGKLSKLGTLDLHSNQLK  266 (429)
Q Consensus       243 ~~~~~-~~~~~~~L~~L~l~~n~l~  266 (429)
                      +.++. .+..+++|+.|++++|.+.
T Consensus       268 ~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          268 TLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CccChhHhccccCCCEEEcCCCCcc
Confidence            65533 3455566666666666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=3.4e-25  Score=200.88  Aligned_cols=200  Identities=23%  Similarity=0.334  Sum_probs=152.2

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCC-CCCc-ch
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNK-LSEL-PA   85 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~-i~~~-~~   85 (429)
                      ++++.|++++++++.+++..|            ..+++|++|++++|.++.+ +..|..+++|++|++++|. ++.+ +.
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASF------------RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTT------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCceEEEeeCCcCCccCHHHc------------ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence            355566666666555555444            4578899999999999987 5579999999999999997 8877 56


Q ss_pred             hhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccccCCc-cccccCCC
Q 014200           86 AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKM  162 (429)
Q Consensus        86 ~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L  162 (429)
                      .+..+++|++|++++|.+..+ +..+.++++|++|++++|++..++. .+..+++|++|++++|.++.++. .+..+++|
T Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (285)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence            899999999999999999877 5568889999999999999997765 46788888999988888886654 47777888


Q ss_pred             cEEEccCCcccccChhhhhcccccceeecCCccCCcCCc-cccCCccCCeEeccCCcCc
Q 014200          163 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL  220 (429)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~  220 (429)
                      +.|++++|.+..+.+..+..+++|++|++++|.++.++. .+..+++|+.|++++|++.
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            888888887776655556666666666666666655543 3555556666666665544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=2.3e-24  Score=208.31  Aligned_cols=238  Identities=24%  Similarity=0.345  Sum_probs=140.3

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcc-hhhhC
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELP-AAIGE   89 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~-~~l~~   89 (429)
                      +.+++++.+++.+|..++               +++++|++++|.++.++ ..|.++++|+.|++++|.++.++ ..|.+
T Consensus        57 ~~v~c~~~~l~~iP~~~~---------------~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  121 (452)
T 3zyi_A           57 SKVVCTRRGLSEVPQGIP---------------SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG  121 (452)
T ss_dssp             CEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             cEEEECCCCcCccCCCCC---------------CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC
Confidence            456666666666665443               23666666666666553 34666666666666666666553 35666


Q ss_pred             CCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCC-ccccCCc-cccccCCCcEE
Q 014200           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNN-CITSLPE-DLADCSKMSKL  165 (429)
Q Consensus        90 l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~-~~~~~~~-~l~~~~~L~~L  165 (429)
                      +++|++|++++|.+..++.. +.++++|++|++++|++..++. .+..+++|++|+++++ .+..++. .+..+++|+.|
T Consensus       122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L  201 (452)
T 3zyi_A          122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYL  201 (452)
T ss_dssp             CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEE
Confidence            66666666666666655443 5556666666666666665543 4556666666666653 3433332 35556666666


Q ss_pred             EccCCcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCC
Q 014200          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS  243 (429)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~  243 (429)
                      ++++|.+..++.  +..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++
T Consensus       202 ~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  279 (452)
T 3zyi_A          202 NLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS  279 (452)
T ss_dssp             ECTTSCCSSCCC--CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCccccccc--ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence            666666655542  45556666666666666544 44455666666666666666544 344555666666666666666


Q ss_pred             ccCh-hhcCCCCCCEEECCCCcCc
Q 014200          244 ALPA-ELGKLSKLGTLDLHSNQLK  266 (429)
Q Consensus       244 ~~~~-~~~~~~~L~~L~l~~n~l~  266 (429)
                      .++. .+..+++|+.|++++|.+.
T Consensus       280 ~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          280 SLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ccChHHhccccCCCEEEccCCCcC
Confidence            5543 3455666666666666554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=3.8e-25  Score=203.55  Aligned_cols=237  Identities=22%  Similarity=0.271  Sum_probs=165.2

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcchhhh
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIG   88 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~l~   88 (429)
                      .++..+++.+.+..++...+..            +++|++|++++|.++.++ ..|..+++|++|++++|.++..++ +.
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~------------~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~   77 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQS------------AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LE   77 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTT------------GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ET
T ss_pred             ceeEeeccccchhhhHHHHhcc------------CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hh
Confidence            3455566666665555555543            556888888888888665 467888888888888888775544 77


Q ss_pred             CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEc
Q 014200           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV  167 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l  167 (429)
                      .+++|++|++++|.+..++.    .++|++|++++|.+..++..  .+++|++|++++|.++.++ ..+..+++|+.|++
T Consensus        78 ~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  151 (317)
T 3o53_A           78 SLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (317)
T ss_dssp             TCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred             hcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence            78888888888887776543    37788888888877765432  3567888888888777553 35666777888888


Q ss_pred             cCCcccccChhhh-hcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccC
Q 014200          168 EGNKLTVLSNNLI-ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP  246 (429)
Q Consensus       168 ~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~  246 (429)
                      ++|.+..++...+ ..++.|++|++++|.++.++. ...+++|+.|++++|.+..++..+..+++|++|++++|.++.+|
T Consensus       152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~  230 (317)
T 3o53_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE  230 (317)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             CCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh
Confidence            8777776554433 356777777777777766543 23466777777777777766666777777777777777777776


Q ss_pred             hhhcCCCCCCEEECCCCcCc
Q 014200          247 AELGKLSKLGTLDLHSNQLK  266 (429)
Q Consensus       247 ~~~~~~~~L~~L~l~~n~l~  266 (429)
                      ..+..+++|+.|++++|.+.
T Consensus       231 ~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             TTCCCCTTCCEEECTTCCCB
T ss_pred             hHhhcCCCCCEEEccCCCcc
Confidence            66667777777777777665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=5.1e-26  Score=208.91  Aligned_cols=240  Identities=16%  Similarity=0.168  Sum_probs=134.6

Q ss_pred             hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCC--ccchhcc-------CCCCCCEEECCCC
Q 014200            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE--KLKEDLR-------NLPLLTVLNVSHN   78 (429)
Q Consensus         8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~~-------~~~~L~~L~l~~~   78 (429)
                      .++++.+++++|.+ .+|..++..               +++|+++++.++  .++..+.       ++++|++|++++|
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~~~~~---------------L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n  105 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQFTDI---------------IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL  105 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHHHHHH---------------HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE
T ss_pred             CCCceeEeeccccc-ccHHHHHHH---------------HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC
Confidence            34566666666666 566655442               555566665554  2333332       5666666666666


Q ss_pred             CCC-Ccchhh--hCCCCCcEeecCCCcCccCCccccCC-----CCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCcc
Q 014200           79 KLS-ELPAAI--GELHMLKSLDVSFNSIMKIPDEIGSA-----TALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCI  149 (429)
Q Consensus        79 ~i~-~~~~~l--~~l~~L~~L~l~~~~i~~l~~~~~~~-----~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~  149 (429)
                      .++ .+|..+  ..+++|++|++++|.+..+|..+..+     ++|++|++++|++..++ ..+..+++|++|++++|.+
T Consensus       106 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  185 (312)
T 1wwl_A          106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE  185 (312)
T ss_dssp             BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTT
T ss_pred             cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCc
Confidence            665 345443  66666666666666666555555444     66666666666666554 4566666666666666654


Q ss_pred             cc---CCccc--cccCCCcEEEccCCccccc---ChhhhhcccccceeecCCccCCcCC--ccccCCccCCeEeccCCcC
Q 014200          150 TS---LPEDL--ADCSKMSKLDVEGNKLTVL---SNNLIASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRI  219 (429)
Q Consensus       150 ~~---~~~~l--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~  219 (429)
                      ..   ++..+  ..+++|++|++++|.+..+   +...+..+++|++|++++|.++..+  ..+..+++|+.|++++|.+
T Consensus       186 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l  265 (312)
T 1wwl_A          186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL  265 (312)
T ss_dssp             CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred             CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence            32   12222  5556666666666666532   2222334456666666666655432  2334455566666666655


Q ss_pred             ccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCc
Q 014200          220 LSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (429)
Q Consensus       220 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~  266 (429)
                      +.+|..+.  ++|++|++++|.++.+|. +..+++|++|++++|.++
T Consensus       266 ~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          266 KQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             SSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTT
T ss_pred             Chhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCC
Confidence            55554443  555555555555555543 555555555555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.8e-26  Score=231.10  Aligned_cols=401  Identities=15%  Similarity=0.135  Sum_probs=241.5

Q ss_pred             HHHHHhhhcCeeeccCCC-CccCC---hhh----hhhhccccCCCcccccCCccEEEcCCCCCCcc-chhcc-CCCCCCE
Q 014200            3 RILKAARTSGSLNLSNRS-LRDVP---NEV----YKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLR-NLPLLTV   72 (429)
Q Consensus         3 ~~~~~~~~l~~L~l~~~~-l~~~~---~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~-~~~~L~~   72 (429)
                      .++..++.++.|+++++. +.++.   ...    ...+.     .-...+++|++|+++++.++.. +..+. .+++|++
T Consensus        60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~-----~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~  134 (594)
T 2p1m_B           60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIE-----AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV  134 (594)
T ss_dssp             HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHH-----HHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCE
T ss_pred             HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHH-----HHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcE
Confidence            457778889999999865 22221   000    00000     0011477899999999887732 23343 6899999


Q ss_pred             EECCCC-CCCC--cchhhhCCCCCcEeecCCCcCcc-----CCccccCCCCcCEEecCCCC--CC--cCCccccCCCCCC
Q 014200           73 LNVSHN-KLSE--LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQ--LK--ELPSSLGRCLNLS  140 (429)
Q Consensus        73 L~l~~~-~i~~--~~~~l~~l~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~--l~--~~~~~~~~~~~L~  140 (429)
                      |++++| .++.  ++..+.++++|++|++++|.+..     ++.....+++|++|+++++.  +.  .+......+++|+
T Consensus       135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~  214 (594)
T 2p1m_B          135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK  214 (594)
T ss_dssp             EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred             EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence            999988 4553  45556689999999999987663     23334477899999998886  22  1222234578999


Q ss_pred             EEEcCCC-ccccCCccccccCCCcEEEccCCc-------ccccChhhhhccccccee-ecCCccCCcCCccccCCccCCe
Q 014200          141 DFKASNN-CITSLPEDLADCSKMSKLDVEGNK-------LTVLSNNLIASWTMLTEL-IASKNLLNGMPETIGSLSRLIR  211 (429)
Q Consensus       141 ~L~l~~~-~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L-~l~~~~l~~~~~~~~~~~~L~~  211 (429)
                      +|++++| .+..++..+..+++|+.+++..+.       +..++. .+.++++|+.+ .+.+.....++.....+++|+.
T Consensus       215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~  293 (594)
T 2p1m_B          215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT  293 (594)
T ss_dssp             EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCE
T ss_pred             EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcCCCcccccCCcccchhhHHHHHHhhCCCCE
Confidence            9999988 444566667788889999865442       222222 35666667766 3433333334444445677778


Q ss_pred             EeccCCcCcc--CCccccccCCCcEEEcCCCCCC--ccChhhcCCCCCCEEECCC---------CcCccccch---hhcc
Q 014200          212 LDLHQNRILS--IPSSISGCCSLAEFYMGNNALS--ALPAELGKLSKLGTLDLHS---------NQLKEYCVE---ACQL  275 (429)
Q Consensus       212 L~l~~~~~~~--~~~~~~~~~~L~~L~l~~n~i~--~~~~~~~~~~~L~~L~l~~---------n~l~~~~~~---~~~~  275 (429)
                      |++++|.++.  +...+..+++|++|++++| ++  .++.....+++|++|++.+         +.+++....   ...+
T Consensus       294 L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~  372 (594)
T 2p1m_B          294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP  372 (594)
T ss_dssp             EECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred             EEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence            8887777552  2233456777777777776 33  2223334577777777732         334322111   1134


Q ss_pred             ccCEEEccCCCCCC--CCccccCCCCCCEEEcc--C----CCCCCccccccCCCcHHHHHHH-HhcCCCCCcccccCChh
Q 014200          276 RLSVLDLSNNSLSG--LPPEIGKMTTLRKLLLT--G----NPLRTLRSSLVNGPTPALLKYL-RSRLPENEDSEASTTKE  346 (429)
Q Consensus       276 ~L~~l~l~~n~l~~--l~~~l~~~~~L~~L~l~--~----~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  346 (429)
                      +|++|.+.++.+++  +......+++|+.|+++  +    +.++..+       ....+... ........+........
T Consensus       373 ~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~-------~~~~~~~l~~~~~~L~~L~L~~~l~~  445 (594)
T 2p1m_B          373 KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP-------LDIGFGAIVEHCKDLRRLSLSGLLTD  445 (594)
T ss_dssp             TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC-------THHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc-------hhhHHHHHHhhCCCccEEeecCcccH
Confidence            57777777777665  22222357777777777  3    3333221       11111111 11111112222222233


Q ss_pred             hHHhhhhccccccccccccCCccc-cCChhh-hccCCCcEEeCCCCcccc--CChhhcccccceeeccccCCCcccc
Q 014200          347 DLITMATRLSVTSKELSLEGMNLS-AIPSEI-WEAGEITKLDLSRNSIQE--LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       347 ~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~-~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      ..........++|+.|++++|.++ ..+..+ ..+++|++|+|++|.+++  +......+++|++|+  +++|+++.
T Consensus       446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~--l~~~~~~~  520 (594)
T 2p1m_B          446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLW--MSSCSVSF  520 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEE--EESSCCBH
T ss_pred             HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEe--eeCCCCCH
Confidence            333333444678999999999987 223333 679999999999999976  444556689999999  99999854

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.92  E-value=1.9e-25  Score=223.55  Aligned_cols=385  Identities=14%  Similarity=0.096  Sum_probs=191.4

Q ss_pred             HHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCC-ccEEEcCCCC-CC--ccchhccCCCCCCEEECCCC
Q 014200            3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVD-LQKLILAHNN-IE--KLKEDLRNLPLLTVLNVSHN   78 (429)
Q Consensus         3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~-i~--~l~~~~~~~~~L~~L~l~~~   78 (429)
                      .+...+++|++|+++++.++......+...           +++ |++|+++++. +.  .++....++++|++|++++|
T Consensus       106 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~-----------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~  174 (592)
T 3ogk_B          106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKA-----------RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES  174 (592)
T ss_dssp             HHHHHCTTCCEEEEESCBCCHHHHHHHHHH-----------HGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC
T ss_pred             HHHhhCCCCCeEEeeccEecHHHHHHHHHh-----------ccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc
Confidence            456688999999999987653322222211           222 6666666554 11  22222345666666666666


Q ss_pred             CCCC-----cchhhhCCCCCcEeecCCCcCcc-----CCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCc
Q 014200           79 KLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNC  148 (429)
Q Consensus        79 ~i~~-----~~~~l~~l~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  148 (429)
                      .+..     ++..+..+++|++|++++|.+..     ++..+.++++|++|++++|.+..++..+..+++|+++.++...
T Consensus       175 ~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~  254 (592)
T 3ogk_B          175 SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLN  254 (592)
T ss_dssp             EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCC
T ss_pred             cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccc
Confidence            5432     22334556666666666665542     2223445666666666666555555555555666666654321


Q ss_pred             cc----cCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCc--CCccccCCccCCeEeccCCcCc--
Q 014200          149 IT----SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRIL--  220 (429)
Q Consensus       149 ~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~--  220 (429)
                      ..    .....+..+++|+.++++++....++. .+..+++|++|++++|.++.  ++..+..+++|+.|++.+ .+.  
T Consensus       255 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~  332 (592)
T 3ogk_B          255 EDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDR  332 (592)
T ss_dssp             CCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHH
T ss_pred             cccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHH
Confidence            11    122334445555555555443222222 24445555555555555422  112234555555555552 222  


Q ss_pred             cCCccccccCCCcEEEcCC-----------CCCCc--cChhhcCCCCCCEEECCCCcCccccchhh---ccccCEEEcc-
Q 014200          221 SIPSSISGCCSLAEFYMGN-----------NALSA--LPAELGKLSKLGTLDLHSNQLKEYCVEAC---QLRLSVLDLS-  283 (429)
Q Consensus       221 ~~~~~~~~~~~L~~L~l~~-----------n~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~l~l~-  283 (429)
                      .++.....+++|++|++++           +.++.  ++.....+++|+.|++..+.+++......   .++|++|+++ 
T Consensus       333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~  412 (592)
T 3ogk_B          333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL  412 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred             HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence            1222234455555555552           23331  22223445555555555555443221111   2235555554 


Q ss_pred             ---CCCCCCCC------ccccCCCCCCEEEccCCC--CCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhh
Q 014200          284 ---NNSLSGLP------PEIGKMTTLRKLLLTGNP--LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA  352 (429)
Q Consensus       284 ---~n~l~~l~------~~l~~~~~L~~L~l~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (429)
                         .|.+++.|      ..+.++++|+.|++++|.  ++        +.....+......+....++... .........
T Consensus       413 ~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~--------~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~  483 (592)
T 3ogk_B          413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT--------DLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEF  483 (592)
T ss_dssp             CSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC--------HHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHH
T ss_pred             cCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc--------HHHHHHHHHhCccceEeeccCCC-CCHHHHHHH
Confidence               33444422      124445555555554332  11        11111111111112222222111 111122333


Q ss_pred             hccccccccccccCCccc--cCChhhhccCCCcEEeCCCCcccc--CChhhcccccceeec
Q 014200          353 TRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQVKF  409 (429)
Q Consensus       353 ~~~~~~L~~l~l~~~~i~--~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~l~~L~~L~  409 (429)
                      ...+++|+.|++++|.++  .++.....+++|++|++++|++++  +..-...+|.+....
T Consensus       484 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~  544 (592)
T 3ogk_B          484 SRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL  544 (592)
T ss_dssp             HTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEE
T ss_pred             HhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEE
Confidence            445679999999999987  356666789999999999999986  333334677776655

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=4.7e-26  Score=209.15  Aligned_cols=242  Identities=20%  Similarity=0.205  Sum_probs=161.3

Q ss_pred             CCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCc--cCCcccc-------CCCCcCEEecCCCCCC-cCCccc--
Q 014200           66 NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIM--KIPDEIG-------SATALVKFDCSSNQLK-ELPSSL--  133 (429)
Q Consensus        66 ~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~--~l~~~~~-------~~~~L~~L~l~~~~l~-~~~~~~--  133 (429)
                      ..++|+.+++++|.+ .+|..+...  |++|++++|.+.  .+|..+.       ++++|++|++++|.+. .+|..+  
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            344555555555555 445443332  555555555553  2333333       4556666666666555 344443  


Q ss_pred             cCCCCCCEEEcCCCccccCCcccccc-----CCCcEEEccCCcccccChhhhhcccccceeecCCccCCc---CCccc--
Q 014200          134 GRCLNLSDFKASNNCITSLPEDLADC-----SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---MPETI--  203 (429)
Q Consensus       134 ~~~~~L~~L~l~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~--  203 (429)
                      ..+++|++|++++|.++..|..+..+     ++|++|++++|.+..+++..+..+++|++|++++|.+..   ++..+  
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            55566666666666665555444444     666666666666666665556666666666666666532   12222  


Q ss_pred             cCCccCCeEeccCCcCccCC----ccccccCCCcEEEcCCCCCCccC--hhhcCCCCCCEEECCCCcCccccchhhcccc
Q 014200          204 GSLSRLIRLDLHQNRILSIP----SSISGCCSLAEFYMGNNALSALP--AELGKLSKLGTLDLHSNQLKEYCVEACQLRL  277 (429)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~n~i~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L  277 (429)
                      ..+++|+.|++++|.+..++    ..+..+++|++|++++|.++..+  ..+..+++|+.|++++|.++.++.... .+|
T Consensus       198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L  276 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-AKL  276 (312)
T ss_dssp             TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-SEE
T ss_pred             ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-CCc
Confidence            67788888888888887433    23456789999999999888654  446678899999999999998877655 679


Q ss_pred             CEEEccCCCCCCCCccccCCCCCCEEEccCCCCCC
Q 014200          278 SVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (429)
Q Consensus       278 ~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~  312 (429)
                      ++|++++|+++++|. +..+++|+.|++++|++++
T Consensus       277 ~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          277 SVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             EEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             eEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            999999999999977 8899999999999999865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1.7e-25  Score=205.91  Aligned_cols=240  Identities=18%  Similarity=0.209  Sum_probs=207.8

Q ss_pred             HHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCC
Q 014200            3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE   82 (429)
Q Consensus         3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~   82 (429)
                      .++..+++|++|++++|+++.+++..+..            +++|++|++++|.++.++. +..+++|++|++++|.++.
T Consensus        28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------------l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           28 SLRQSAWNVKELDLSGNPLSQISAADLAP------------FTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             HHHTTGGGCSEEECTTSCCCCCCHHHHTT------------CTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE
T ss_pred             HHhccCCCCCEEECcCCccCcCCHHHhhC------------CCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc
Confidence            45666789999999999999998877765            6789999999999987765 8999999999999999887


Q ss_pred             cchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccccC-Cccc-ccc
Q 014200           83 LPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSL-PEDL-ADC  159 (429)
Q Consensus        83 ~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~l-~~~  159 (429)
                      ++    ..++|++|++++|.+..++..  .+++|++|++++|++..++. .+..+++|++|++++|.+..+ +..+ ..+
T Consensus        95 l~----~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l  168 (317)
T 3o53_A           95 LL----VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS  168 (317)
T ss_dssp             EE----ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred             cc----CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhcc
Confidence            65    448999999999999876543  47899999999999997754 678889999999999999865 3344 468


Q ss_pred             CCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCC
Q 014200          160 SKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN  239 (429)
Q Consensus       160 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~  239 (429)
                      ++|++|++++|.+..++.  ...+++|++|++++|.++.+|..+..+++|+.|++++|.+..+|..+..+++|+.|++++
T Consensus       169 ~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          169 DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred             CcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence            999999999999988754  345899999999999999998889999999999999999999999999999999999999


Q ss_pred             CCCC--ccChhhcCCCCCCEEECCCC
Q 014200          240 NALS--ALPAELGKLSKLGTLDLHSN  263 (429)
Q Consensus       240 n~i~--~~~~~~~~~~~L~~L~l~~n  263 (429)
                      |.++  .++.++..+++|+.+++.++
T Consensus       247 N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          247 NGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCccCcCHHHHHhccccceEEECCCc
Confidence            9998  56778888888888877643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=3.7e-24  Score=208.17  Aligned_cols=230  Identities=22%  Similarity=0.205  Sum_probs=139.7

Q ss_pred             CCcEeecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCC
Q 014200           92 MLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN  170 (429)
Q Consensus        92 ~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~  170 (429)
                      +|++|++++|.+..++ ..+..+++|++|++++|.+...+. +..+++|++|++++|.++                    
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~--------------------   93 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQ--------------------   93 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEE--------------------
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCC--------------------
Confidence            5666666666555443 345555566666665555553322 444444444444444444                    


Q ss_pred             cccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCcc-Chh
Q 014200          171 KLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAE  248 (429)
Q Consensus       171 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~  248 (429)
                         .++.     .+.|++|++++|.+..++.  ..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.. |..
T Consensus        94 ---~l~~-----~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  163 (487)
T 3oja_A           94 ---ELLV-----GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAE  163 (487)
T ss_dssp             ---EEEE-----CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGG
T ss_pred             ---CCCC-----CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHH
Confidence               3221     1344444444444443322  2345677777777777655 44667777777777777777753 444


Q ss_pred             hc-CCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHH
Q 014200          249 LG-KLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLK  327 (429)
Q Consensus       249 ~~-~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~  327 (429)
                      +. .+++|+.|++++|.+++++......+|+.|++++|.++++|+.+..+++|+.|++++|                   
T Consensus       164 l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N-------------------  224 (487)
T 3oja_A          164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-------------------  224 (487)
T ss_dssp             GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-------------------
T ss_pred             HhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCC-------------------
Confidence            43 6777777777777777665444444566666666666665555555555555555555                   


Q ss_pred             HHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccc-c-CChhhcccccc
Q 014200          328 YLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-E-LPPELSSCASL  405 (429)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~-~-~~~~l~~l~~L  405 (429)
                                                              .++.+|..+..+++|+.|++++|.+. + +|..+..++.|
T Consensus       225 ----------------------------------------~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L  264 (487)
T 3oja_A          225 ----------------------------------------KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV  264 (487)
T ss_dssp             ----------------------------------------CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHH
T ss_pred             ----------------------------------------cCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCC
Confidence                                                    44456666667788888899888887 3 77888888888


Q ss_pred             eeeccccC
Q 014200          406 QVKFSDLV  413 (429)
Q Consensus       406 ~~L~~~l~  413 (429)
                      +.++  ++
T Consensus       265 ~~l~--~~  270 (487)
T 3oja_A          265 QTVA--KQ  270 (487)
T ss_dssp             HHHH--HH
T ss_pred             cEEe--cc
Confidence            8888  75

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=1e-22  Score=183.63  Aligned_cols=222  Identities=22%  Similarity=0.316  Sum_probs=165.0

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhC
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~   89 (429)
                      ...++++.++..+|..+.               +++++|++++|.++.++. .|.++++|++|++++|.++.++. .+.+
T Consensus        10 ~~~~c~~~~l~~ip~~l~---------------~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP---------------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS   74 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC---------------TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTT
T ss_pred             ceEEecCCCccccCCCCC---------------CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccC
Confidence            357788888888887653               358999999999998776 68889999999999999887755 7889


Q ss_pred             CCCCcEeecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCcccc--CCccccccCCCcEE
Q 014200           90 LHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITS--LPEDLADCSKMSKL  165 (429)
Q Consensus        90 l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~l~~~~~L~~L  165 (429)
                      +++|++|++++|.+..++ ..+.++++|++|++++|.+..++. .+..+++|++|++++|.++.  +|..+..+++|+.|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L  154 (276)
T 2z62_A           75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  154 (276)
T ss_dssp             CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence            999999999999888665 568889999999999998887754 57788899999999988875  57778888888888


Q ss_pred             EccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc
Q 014200          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL  245 (429)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  245 (429)
                      ++++|.+..++...+..++.++.+.+                   .+++++|.+..++.......+|++|++++|.++.+
T Consensus       155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l-------------------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~  215 (276)
T 2z62_A          155 DLSSNKIQSIYCTDLRVLHQMPLLNL-------------------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV  215 (276)
T ss_dssp             ECCSSCCCEECGGGGHHHHTCTTCCE-------------------EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC
T ss_pred             ECCCCCCCcCCHHHhhhhhhccccce-------------------eeecCCCcccccCccccCCCcccEEECCCCceeec
Confidence            88888888776655555555541110                   45555555554443333344666666666666666


Q ss_pred             Chh-hcCCCCCCEEECCCCcCcc
Q 014200          246 PAE-LGKLSKLGTLDLHSNQLKE  267 (429)
Q Consensus       246 ~~~-~~~~~~L~~L~l~~n~l~~  267 (429)
                      +.. +..+++|+.|++++|.+..
T Consensus       216 ~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          216 PDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CHhHhcccccccEEEccCCcccc
Confidence            443 4666777777777776664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=3.3e-23  Score=201.44  Aligned_cols=215  Identities=23%  Similarity=0.286  Sum_probs=168.3

Q ss_pred             cCCccEEEcCCCCCCccc-hhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecC
Q 014200           44 AVDLQKLILAHNNIEKLK-EDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~  122 (429)
                      +++|++|++++|.++.++ ..|..+++|++|++++|.++..++ +..+++|++|++++|.+..++.    .++|++|+++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence            557889999988888765 468888899999999888875544 7888889999998888876654    3788888888


Q ss_pred             CCCCCcCCccccCCCCCCEEEcCCCccccC-CccccccCCCcEEEccCCcccccChhhhh-cccccceeecCCccCCcCC
Q 014200          123 SNQLKELPSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLTVLSNNLIA-SWTMLTELIASKNLLNGMP  200 (429)
Q Consensus       123 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~  200 (429)
                      +|.+..++..  .+++|+.|++++|.++.+ +..+..+++|+.|++++|.+...++..+. .++.|++|++++|.++.++
T Consensus       108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence            8888866542  457888888888888855 45677788888888888888775554444 6788888888888887664


Q ss_pred             ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCc
Q 014200          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (429)
Q Consensus       201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~  266 (429)
                      . ...+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+.
T Consensus       186 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             C-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             c-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence            3 3357788888888888887777777888888888888888888777777888888888888776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.89  E-value=3.1e-25  Score=222.12  Aligned_cols=388  Identities=15%  Similarity=0.138  Sum_probs=218.4

Q ss_pred             HHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCC-CCCc--cchhccCCCCCCEEECCCCC
Q 014200            3 RILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHN-NIEK--LKEDLRNLPLLTVLNVSHNK   79 (429)
Q Consensus         3 ~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~--l~~~~~~~~~L~~L~l~~~~   79 (429)
                      .+...+++|++|+++++.++......+..           .+++|++|++++| .++.  ++..+.++++|++|++++|.
T Consensus        99 ~l~~~~~~L~~L~L~~~~~~~~~~~~l~~-----------~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B           99 AMSSSYTWLEEIRLKRMVVTDDCLELIAK-----------SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             HHHHHCTTCCEEEEESCBCCHHHHHHHHH-----------HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             HHHHhCCCCCeEEeeCcEEcHHHHHHHHH-----------hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            45678889999999999865332222210           2678999999888 5553  55455678999999999988


Q ss_pred             CCCc-----chhhhCCCCCcEeecCCCc--Cc--cCCccccCCCCcCEEecCCC-CCCcCCccccCCCCCCEEEcCCCc-
Q 014200           80 LSEL-----PAAIGELHMLKSLDVSFNS--IM--KIPDEIGSATALVKFDCSSN-QLKELPSSLGRCLNLSDFKASNNC-  148 (429)
Q Consensus        80 i~~~-----~~~l~~l~~L~~L~l~~~~--i~--~l~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~~-  148 (429)
                      ++..     +.....+++|++|++++|.  +.  .++..+..+++|++|++++| .+..++..+..+++|++|.+..+. 
T Consensus       168 i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  247 (594)
T 2p1m_B          168 VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTA  247 (594)
T ss_dssp             EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred             cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccC
Confidence            6642     2233467899999998886  22  12222355789999999887 333555566677888888865442 


Q ss_pred             ------cccCCccccccCCCcEE-EccCCcccccChhhhhcccccceeecCCccCCc--CCccccCCccCCeEeccCCcC
Q 014200          149 ------ITSLPEDLADCSKMSKL-DVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRI  219 (429)
Q Consensus       149 ------~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~  219 (429)
                            +..++..+..+++|+.+ .+.......++. ....+++|++|++++|.++.  +...+..+++|+.|++.+| +
T Consensus       248 ~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~  325 (594)
T 2p1m_B          248 EVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-I  325 (594)
T ss_dssp             CCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGG-GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-G
T ss_pred             ccchhhHHHHHHHHhcCCCcccccCCcccchhhHHH-HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-c
Confidence                  22333345566666666 333222222221 13355666677766666432  2222445666666766665 2


Q ss_pred             c--cCCccccccCCCcEEEcCC---------CCCCc--cChhhcCCCCCCEEECCCCcCccccchh---hccccCEEEcc
Q 014200          220 L--SIPSSISGCCSLAEFYMGN---------NALSA--LPAELGKLSKLGTLDLHSNQLKEYCVEA---CQLRLSVLDLS  283 (429)
Q Consensus       220 ~--~~~~~~~~~~~L~~L~l~~---------n~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~~L~~l~l~  283 (429)
                      .  .++.....+++|++|++.+         +.++.  +......+++|+.|.+..+.++......   ..++|++|+++
T Consensus       326 ~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          326 EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            2  1122223466666666622         23331  1111234566666666666655322221   12346666666


Q ss_pred             --C----CCCCCCC------ccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhh
Q 014200          284 --N----NSLSGLP------PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM  351 (429)
Q Consensus       284 --~----n~l~~l~------~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (429)
                        +    +.+++.+      ..+..+++|+.|++++ .+++        .....+......+....++.... .......
T Consensus       406 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~--------~~~~~l~~~~~~L~~L~L~~~~i-~~~~~~~  475 (594)
T 2p1m_B          406 IIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD--------KVFEYIGTYAKKMEMLSVAFAGD-SDLGMHH  475 (594)
T ss_dssp             ESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH--------HHHHHHHHHCTTCCEEEEESCCS-SHHHHHH
T ss_pred             cccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH--------HHHHHHHHhchhccEeeccCCCC-cHHHHHH
Confidence              2    3444322      1245566666666654 2221        11111111111222222222221 1222222


Q ss_pred             hhccccccccccccCCcccc--CChhhhccCCCcEEeCCCCcccc-CChhh-cccccceeeccccCCC
Q 014200          352 ATRLSVTSKELSLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQE-LPPEL-SSCASLQVKFSDLVTN  415 (429)
Q Consensus       352 ~~~~~~~L~~l~l~~~~i~~--~~~~~~~~~~L~~L~ls~n~i~~-~~~~l-~~l~~L~~L~~~l~~n  415 (429)
                      ....+++|+.|++++|.++.  +......+++|++|++++|+++. -.+.+ ..+|.|+...  +..+
T Consensus       476 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~--~~~~  541 (594)
T 2p1m_B          476 VLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV--IDER  541 (594)
T ss_dssp             HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE--ECSS
T ss_pred             HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE--ecCC
Confidence            33446899999999999972  33344568999999999999865 33334 4677776665  5544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=5.6e-22  Score=179.66  Aligned_cols=197  Identities=26%  Similarity=0.329  Sum_probs=107.2

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc-hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecC
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCS  122 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~  122 (429)
                      ++++++++++++.++.+|..+.  ++++.|++++|.++.++ ..+..+++|++|++++|.+..++.. ..+++|++|+++
T Consensus         9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls   85 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS   85 (290)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred             cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence            3445555555555555544332  34555555555554432 3445555555555555555444332 445555555555


Q ss_pred             CCCCCcCCccccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc
Q 014200          123 SNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (429)
Q Consensus       123 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  201 (429)
                      +|++..+|..+..+++|++|++++|+++.++ ..+..+++|+.|++++|.+..++...+..+++|+.|++++|.++.+|.
T Consensus        86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G           86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence            5555555554555555555555555555443 335555555566665555555555545555566666666666655543


Q ss_pred             c-ccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC
Q 014200          202 T-IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS  243 (429)
Q Consensus       202 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~  243 (429)
                      . +..+++|+.|++++|.+..+|..+...++|+.+++++|.+.
T Consensus       166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            2 34566666666666666666666666666666777666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1e-21  Score=177.87  Aligned_cols=199  Identities=23%  Similarity=0.268  Sum_probs=93.1

Q ss_pred             cCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEE
Q 014200           65 RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFK  143 (429)
Q Consensus        65 ~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~  143 (429)
                      .+++++++++++++.++.+|..+.  +++++|++++|.+..+ +..+.++++|++|++++|.+..++.. ..+++|++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~   83 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD   83 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence            344445555555554444443321  3444555555544433 23344445555555555544444322 3444455555


Q ss_pred             cCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc-cccCCccCCeEeccCCcCccC
Q 014200          144 ASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSI  222 (429)
Q Consensus       144 l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~  222 (429)
                      +++|.++.+|..+..+++|+.|++++|.++.+++..+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..+
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            5555544444444444455555555554444444444444555555555554444432 233444455555555554444


Q ss_pred             Cc-cccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCc
Q 014200          223 PS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK  266 (429)
Q Consensus       223 ~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~  266 (429)
                      +. .+..+++|++|++++|.++.+|..+...++|+.+++++|.+.
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            32 234444555555555555544444444444555555554443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=4.8e-22  Score=181.86  Aligned_cols=195  Identities=22%  Similarity=0.305  Sum_probs=111.4

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCC
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~  123 (429)
                      +++|++|+++++.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence            344666666666555554 45555666666666666555544 555666666666665555543 345555555555555


Q ss_pred             CCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (429)
Q Consensus       124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  203 (429)
                      |++..++. +..+++|++|++++|.++.+                       +.  +..+++|+.|++++|.++.++. +
T Consensus       117 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-----------------------~~--l~~l~~L~~L~l~~n~l~~~~~-l  169 (308)
T 1h6u_A          117 TQITDVTP-LAGLSNLQVLYLDLNQITNI-----------------------SP--LAGLTNLQYLSIGNAQVSDLTP-L  169 (308)
T ss_dssp             SCCCCCGG-GTTCTTCCEEECCSSCCCCC-----------------------GG--GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             CCCCCchh-hcCCCCCCEEECCCCccCcC-----------------------cc--ccCCCCccEEEccCCcCCCChh-h
Confidence            55554432 44445555555555544433                       32  3444445555555555544433 5


Q ss_pred             cCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccc
Q 014200          204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV  270 (429)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~  270 (429)
                      ..+++|+.|++++|.+..++. +..+++|++|++++|.++.+++ +..+++|+.|++++|.++..+.
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred             cCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence            555666666666666665543 5666777777777777776653 6667777777777777665443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=1.5e-21  Score=175.89  Aligned_cols=218  Identities=22%  Similarity=0.245  Sum_probs=154.2

Q ss_pred             cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCC
Q 014200           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQ  125 (429)
Q Consensus        48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~  125 (429)
                      .+++..+..+..+|..+.  +++++|++++|.++.++. .+.++++|++|++++|.+..++. .+.++++|++|++++|.
T Consensus        10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            345666666777776553  468888888888887655 77788888888888887776654 56777788888887777


Q ss_pred             CCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200          126 LKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (429)
Q Consensus       126 l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  203 (429)
                      +..++ ..+..+++|++|++++|.+..++. .+..+++|++|++++|.+..+.                      +|..+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----------------------l~~~~  145 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----------------------LPEYF  145 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----------------------CCGGG
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec----------------------Cchhh
Confidence            77554 445666666666666666654433 3455555555555555443321                      34556


Q ss_pred             cCCccCCeEeccCCcCccCC-ccccccCCCc----EEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhh--ccc
Q 014200          204 GSLSRLIRLDLHQNRILSIP-SSISGCCSLA----EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC--QLR  276 (429)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~----~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~  276 (429)
                      ..+++|+.|++++|.++.++ ..+..+++++    ++++++|.++.++.......+|+.|++++|.+++++...+  ..+
T Consensus       146 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  225 (276)
T 2z62_A          146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS  225 (276)
T ss_dssp             GGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred             ccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhccccc
Confidence            66777777777777777553 4566666666    8999999999887766666799999999999998877643  345


Q ss_pred             cCEEEccCCCCCC
Q 014200          277 LSVLDLSNNSLSG  289 (429)
Q Consensus       277 L~~l~l~~n~l~~  289 (429)
                      |+++++++|.++.
T Consensus       226 L~~L~l~~N~~~c  238 (276)
T 2z62_A          226 LQKIWLHTNPWDC  238 (276)
T ss_dssp             CCEEECCSSCBCC
T ss_pred             ccEEEccCCcccc
Confidence            9999999998875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=2.4e-21  Score=177.17  Aligned_cols=198  Identities=24%  Similarity=0.325  Sum_probs=167.4

Q ss_pred             HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (429)
Q Consensus         5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~   84 (429)
                      +..+++|+.|+++++.+.+++.  +.            .+++|++|++++|.++.++. +..+++|++|++++|.++.++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~--~~------------~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~  101 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIEG--VQ------------YLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS  101 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred             HHHcCCcCEEEeeCCCccCchh--hh------------ccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch
Confidence            4568899999999999998863  33            27889999999999999887 999999999999999999875


Q ss_pred             hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (429)
Q Consensus        85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~  164 (429)
                       .+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|+.
T Consensus       102 -~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~  177 (308)
T 1h6u_A          102 -AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTT  177 (308)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             -hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCE
Confidence             68899999999999999998865 8899999999999999998865 7888999999999999987765 788899999


Q ss_pred             EEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCc
Q 014200          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS  224 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~  224 (429)
                      |++++|.+..++.  +..+++|++|++++|.+..++. +..+++|+.|++++|.++..|.
T Consensus       178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred             EECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence            9999998887664  6677778888888887776653 6677777777777777665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=2.9e-21  Score=173.41  Aligned_cols=195  Identities=23%  Similarity=0.355  Sum_probs=110.3

Q ss_pred             ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCC
Q 014200           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSN  124 (429)
Q Consensus        47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~  124 (429)
                      .++++++++.++.+|..+.  +++++|++++|.++.++. +|.++++|++|++++|.+..++.. +.++++|++|++++|
T Consensus        18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            4455555555555554332  345555555555554443 455555555555555555554433 344555555555555


Q ss_pred             CCCcCCc-cccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCc-
Q 014200          125 QLKELPS-SLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-  201 (429)
Q Consensus       125 ~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-  201 (429)
                      .+..++. .+..+++|++|++++|.++.++ ..+..+++|++|++++|.+..++...+..+++|++|++++|.++.++. 
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  175 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG  175 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh
Confidence            5554443 2345555555555555555443 234555666666666666665555555566666666666666655543 


Q ss_pred             cccCCccCCeEeccCCcCccCCc-cccccCCCcEEEcCCCCCC
Q 014200          202 TIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALS  243 (429)
Q Consensus       202 ~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~  243 (429)
                      .+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus       176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             HhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            35566677777777777766543 4566777777777777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=2.2e-20  Score=167.68  Aligned_cols=197  Identities=25%  Similarity=0.371  Sum_probs=151.7

Q ss_pred             CCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCcc-ccCCCCCCEEEcCC
Q 014200           69 LLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASN  146 (429)
Q Consensus        69 ~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~  146 (429)
                      +.+.++++++.++.+|..+.  +++++|++++|.+..++. .+.++++|++|++++|.+..++.. +..+++|++|++++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            57789999999888876543  678999999998887765 588889999999999988887764 46788899999988


Q ss_pred             CccccCCc-cccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcc-ccCCccCCeEeccCCcCccCCc
Q 014200          147 NCITSLPE-DLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIPS  224 (429)
Q Consensus       147 ~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~  224 (429)
                      |.+..++. .+..+++|+.|++++|.+..++...+..+++|++|++++|.++.++.. +..+++|+.|++++|.+..++.
T Consensus        95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            88887654 467788888888888888877776677778888888888877766543 5677778888887777776653


Q ss_pred             -cccccCCCcEEEcCCCCCCccCh-hhcCCCCCCEEECCCCcCcc
Q 014200          225 -SISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKE  267 (429)
Q Consensus       225 -~~~~~~~L~~L~l~~n~i~~~~~-~~~~~~~L~~L~l~~n~l~~  267 (429)
                       .+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence             46677777777777777776654 36667777777777776653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.3e-21  Score=172.32  Aligned_cols=192  Identities=16%  Similarity=0.219  Sum_probs=92.4

Q ss_pred             CCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCc-CccCCc-cccCCCCcCEEecCC-CCCCcCC-ccccCCCCCCEEE
Q 014200           69 LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS-IMKIPD-EIGSATALVKFDCSS-NQLKELP-SSLGRCLNLSDFK  143 (429)
Q Consensus        69 ~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~-i~~l~~-~~~~~~~L~~L~l~~-~~l~~~~-~~~~~~~~L~~L~  143 (429)
                      ++++|++++|.++.++. .|.++++|++|++++|. ++.++. .+.++++|++|++++ |++..++ ..+..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44444444444444333 34444444444444443 443332 244444444444444 4444333 2334444444444


Q ss_pred             cCCCccccCCccccccCCCc---EEEccCC-cccccChhhhhcccccc-eeecCCccCCcCCccccCCccCCeEeccCCc
Q 014200          144 ASNNCITSLPEDLADCSKMS---KLDVEGN-KLTVLSNNLIASWTMLT-ELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (429)
Q Consensus       144 l~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  218 (429)
                      +++|.++.+|. +..+++|+   .|++++| .+..++...+..+++|+ ++++++|.++.+|......++|+.|++++|.
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~  190 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK  190 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence            44444444443 44444444   5555555 55555544455555555 5555555555444333233555566666653


Q ss_pred             -CccCC-cccccc-CCCcEEEcCCCCCCccChhhcCCCCCCEEECCCC
Q 014200          219 -ILSIP-SSISGC-CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (429)
Q Consensus       219 -~~~~~-~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n  263 (429)
                       ++.++ ..+..+ ++|++|++++|.++.+|..  .+++|+.|++.++
T Consensus       191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence             55443 344555 5666666666666555443  4455555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.86  E-value=4.4e-21  Score=188.20  Aligned_cols=217  Identities=24%  Similarity=0.287  Sum_probs=148.0

Q ss_pred             CCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCC
Q 014200          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (429)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n  240 (429)
                      +++.|++++|.+..++...   .++|++|++++|.++.+|   ..+++|+.|++++|.++.+|. +..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            4555555555555444321   245566666666665555   345677777777777777666 443  7888888888


Q ss_pred             CCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCC
Q 014200          241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG  320 (429)
Q Consensus       241 ~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~  320 (429)
                      .++.+|.   .+++|+.|++++|.++.++.  ...+|++|++++|.++++|. +.  ++|+.|++++|.++.++.  +.+
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~  200 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA--VPV  200 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC--CC-
T ss_pred             cCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh--HHH
Confidence            8877766   57788888888888887665  34568888888888888877 55  889999999999887775  221


Q ss_pred             CcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCcccc-CChhh
Q 014200          321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPEL  399 (429)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l  399 (429)
                      .    +                          ....+.|+.|++++|.|+.+|..++.+++|+.|+|++|.+++ +|..+
T Consensus       201 ~----L--------------------------~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l  250 (571)
T 3cvr_A          201 R----N--------------------------HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL  250 (571)
T ss_dssp             -------------------------------------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred             h----h--------------------------hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence            1    0                          011235699999999999999999999999999999999998 88887


Q ss_pred             cccccc-------eeeccccCCCcccc----ccccccccc
Q 014200          400 SSCASL-------QVKFSDLVTNKESC----ISGCYLYWN  428 (429)
Q Consensus       400 ~~l~~L-------~~L~~~l~~n~i~~----i~~~~~~~~  428 (429)
                      ..++..       -+++  ++++.+..    .++|...|.
T Consensus       251 ~~l~~~~~~~~~~~~~~--l~~~~~~~~~~p~~~~~~~Wl  288 (571)
T 3cvr_A          251 SQQTAQPDYHGPRIYFS--MSDGQQNTLHRPLADAVTAWF  288 (571)
T ss_dssp             HHHHHSCC---CEEECC--C----------CCSHHHHTTC
T ss_pred             HHhhcCccccCCeeEEe--ecccccccccccchhhHHHHh
Confidence            776542       1234  66654432    567888885

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.9e-21  Score=171.36  Aligned_cols=192  Identities=21%  Similarity=0.310  Sum_probs=168.6

Q ss_pred             CCccEEEcCCCCCCccch-hccCCCCCCEEECCCCC-CCCcch-hhhCCCCCcEeecCC-CcCccCC-ccccCCCCcCEE
Q 014200           45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK-LSELPA-AIGELHMLKSLDVSF-NSIMKIP-DEIGSATALVKF  119 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~-i~~~~~-~l~~l~~L~~L~l~~-~~i~~l~-~~~~~~~~L~~L  119 (429)
                      +++++|+++++.++.++. .|.++++|++|++++|. ++.++. +|.++++|++|++++ |.++.++ ..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            369999999999998887 68999999999999997 888876 889999999999998 8999886 458899999999


Q ss_pred             ecCCCCCCcCCccccCCCCCC---EEEcCCC-ccccCCc-cccccCCCc-EEEccCCcccccChhhhhcccccceeecCC
Q 014200          120 DCSSNQLKELPSSLGRCLNLS---DFKASNN-CITSLPE-DLADCSKMS-KLDVEGNKLTVLSNNLIASWTMLTELIASK  193 (429)
Q Consensus       120 ~l~~~~l~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~-~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  193 (429)
                      ++++|++..+|. +..+++|+   +|++++| .++.++. .+..+++|+ .+++++|.+..++...+.. ++|+++++++
T Consensus       111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred             eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence            999999999887 88888888   9999999 8887764 488899999 9999999999888776666 8999999999


Q ss_pred             cc-CCcCC-ccccCC-ccCCeEeccCCcCccCCccccccCCCcEEEcCCC
Q 014200          194 NL-LNGMP-ETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (429)
Q Consensus       194 ~~-l~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n  240 (429)
                      |+ ++.++ ..+..+ ++|+.|++++|.++.+|..  .+++|+.|+++++
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence            95 88775 457788 9999999999999988764  6889999999876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=5.3e-21  Score=171.82  Aligned_cols=199  Identities=24%  Similarity=0.369  Sum_probs=125.2

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecC
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCS  122 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~  122 (429)
                      +++|+.|+++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+..++.. +.++++|++|+++
T Consensus        40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            456777777777776655 4666777777777777776653 566777777777777777766543 5667777777777


Q ss_pred             CCCCCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCC
Q 014200          123 SNQLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (429)
Q Consensus       123 ~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  200 (429)
                      +|++..++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++...+..+++|++|++++|.++.++
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence            7777765543 56667777777777766655433 456667777777777666666555556666666666666665543


Q ss_pred             c-cccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC-ccChhhc
Q 014200          201 E-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELG  250 (429)
Q Consensus       201 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~  250 (429)
                      . .+..+++|+.|++++|++.      +.++.++.++++.|.++ .+|.+++
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          198 DGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             TTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             HHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCccc
Confidence            3 2455566666666665443      22444555555555444 3344443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=2e-22  Score=190.67  Aligned_cols=222  Identities=19%  Similarity=0.180  Sum_probs=129.1

Q ss_pred             CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCC-----cchhhhCCCCCcEeecCCCcCcc----CCccc------
Q 014200           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK----IPDEI------  110 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~-----~~~~l~~l~~L~~L~l~~~~i~~----l~~~~------  110 (429)
                      .++...++...+..++..+..+++|+.|++++|.++.     ++..+..+++|++|++++|.+..    +|..+      
T Consensus        10 ~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           10 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             CCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            3444445555555677778888999999999998874     33446788999999998875542    33333      


Q ss_pred             -cCCCCcCEEecCCCCCCc-----CCccccCCCCCCEEEcCCCcccc-----CCcccccc---------CCCcEEEccCC
Q 014200          111 -GSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITS-----LPEDLADC---------SKMSKLDVEGN  170 (429)
Q Consensus       111 -~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~-----~~~~l~~~---------~~L~~L~l~~~  170 (429)
                       ..+++|++|++++|.+..     ++..+..+++|++|++++|.++.     ++..+..+         ++|++|++++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence             577888888888887774     45566667777777777777652     22223333         67777777776


Q ss_pred             cccccCh----hhhhcccccceeecCCccCCc------CCccccCCccCCeEeccCCcCc-----cCCccccccCCCcEE
Q 014200          171 KLTVLSN----NLIASWTMLTELIASKNLLNG------MPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEF  235 (429)
Q Consensus       171 ~~~~~~~----~~~~~~~~L~~L~l~~~~l~~------~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L  235 (429)
                      .+.....    ..+..+++|++|++++|.+..      .+..+..+++|+.|++++|.++     .++..+..+++|++|
T Consensus       170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L  249 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL  249 (386)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence            6652221    123445555666665555541      1223444555555555555552     233444455555555


Q ss_pred             EcCCCCCCc-----cChhhcC--CCCCCEEECCCCcCcc
Q 014200          236 YMGNNALSA-----LPAELGK--LSKLGTLDLHSNQLKE  267 (429)
Q Consensus       236 ~l~~n~i~~-----~~~~~~~--~~~L~~L~l~~n~l~~  267 (429)
                      ++++|.++.     ++..+..  +++|+.|++++|.++.
T Consensus       250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            555555542     2333322  4555555555555543

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=4.3e-22  Score=188.47  Aligned_cols=226  Identities=18%  Similarity=0.195  Sum_probs=128.2

Q ss_pred             cCCccEEEcCCCCCCc-----cchhccCCCCCCEEECCCCCCCC----cchh-------hhCCCCCcEeecCCCcCcc--
Q 014200           44 AVDLQKLILAHNNIEK-----LKEDLRNLPLLTVLNVSHNKLSE----LPAA-------IGELHMLKSLDVSFNSIMK--  105 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~i~~----~~~~-------l~~l~~L~~L~l~~~~i~~--  105 (429)
                      +++|++|++++|.++.     ++..+..+++|++|++++|.+..    +|..       +..+++|++|++++|.+..  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            5566666666666652     23335566666666666654432    2222       2566666666666666653  


Q ss_pred             ---CCccccCCCCcCEEecCCCCCCc-----CCccccCC---------CCCCEEEcCCCccc--cCC---ccccccCCCc
Q 014200          106 ---IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRC---------LNLSDFKASNNCIT--SLP---EDLADCSKMS  163 (429)
Q Consensus       106 ---l~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~---------~~L~~L~l~~~~~~--~~~---~~l~~~~~L~  163 (429)
                         ++..+..+++|++|++++|.+..     ++..+..+         ++|++|++++|.++  .++   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence               44455666666666666666541     22222233         56666666666664  222   3445566666


Q ss_pred             EEEccCCccccc-----ChhhhhcccccceeecCCccC-----CcCCccccCCccCCeEeccCCcCcc-----CCcccc-
Q 014200          164 KLDVEGNKLTVL-----SNNLIASWTMLTELIASKNLL-----NGMPETIGSLSRLIRLDLHQNRILS-----IPSSIS-  227 (429)
Q Consensus       164 ~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~l-----~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~-  227 (429)
                      .|++++|.+...     .+..+..+++|++|++++|.+     ..+|..+..+++|+.|++++|.++.     ++..+. 
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            666666665521     111345566666666666666     2345555666666666666666653     233342 


Q ss_pred             -ccCCCcEEEcCCCCCCc-----cChhh-cCCCCCCEEECCCCcCcccc
Q 014200          228 -GCCSLAEFYMGNNALSA-----LPAEL-GKLSKLGTLDLHSNQLKEYC  269 (429)
Q Consensus       228 -~~~~L~~L~l~~n~i~~-----~~~~~-~~~~~L~~L~l~~n~l~~~~  269 (429)
                       .+++|++|++++|.++.     +|..+ ..+++|+.|++++|.+++..
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             26666666666666664     55554 44566666666666665433

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=2.5e-21  Score=181.39  Aligned_cols=103  Identities=15%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             eecCCCcCccC-CccccCCCCcCEEecCCCCCCcCC-----ccccCCC-CCCEEEcCCCccccC-Ccccccc-----CCC
Q 014200           96 LDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-----SSLGRCL-NLSDFKASNNCITSL-PEDLADC-----SKM  162 (429)
Q Consensus        96 L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~-~L~~L~l~~~~~~~~-~~~l~~~-----~~L  162 (429)
                      .+++.|.+... |..+...++|++|++++|.+...+     ..+..++ +|++|++++|.++.. +..+...     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            45666666633 333444445777777777766544     3445555 666666666666533 2223332     666


Q ss_pred             cEEEccCCcccccChhhhhcc-----cccceeecCCccCCc
Q 014200          163 SKLDVEGNKLTVLSNNLIASW-----TMLTELIASKNLLNG  198 (429)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~  198 (429)
                      ++|++++|.+...+...+...     ++|++|++++|.++.
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            666666666655444323222     455555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=7.2e-20  Score=164.42  Aligned_cols=206  Identities=22%  Similarity=0.319  Sum_probs=174.7

Q ss_pred             HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (429)
Q Consensus         5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~   84 (429)
                      +..+++++.|+++++.+.+++.  +.            .+++|++|++++|.++.++ .+..+++|++|++++|.++.++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~--l~------------~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~  101 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQG--IQ------------YLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLP  101 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTT--GG------------GCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCC
T ss_pred             cccccceeeeeeCCCCcccccc--cc------------cCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccC
Confidence            4567889999999999887763  22            3788999999999999875 7899999999999999999876


Q ss_pred             h-hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccC
Q 014200           85 A-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCS  160 (429)
Q Consensus        85 ~-~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~  160 (429)
                      . .+.++++|++|++++|.+..++.. +..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.. +..++
T Consensus       102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  181 (272)
T 3rfs_A          102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT  181 (272)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCc
Confidence            5 679999999999999999987655 78899999999999999987654 67899999999999999977544 68899


Q ss_pred             CCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCc-cCCccccccCC
Q 014200          161 KMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCS  231 (429)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~  231 (429)
                      +|+.|++++|.+..+++..+..+++|+.+++++|.+.      ..++.++.+++..|.+. .+|..++.++.
T Consensus       182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            9999999999999988877889999999999999664      34567888888888776 55666555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=4.5e-20  Score=181.07  Aligned_cols=182  Identities=25%  Similarity=0.303  Sum_probs=159.0

Q ss_pred             ccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCc
Q 014200          185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ  264 (429)
Q Consensus       185 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~  264 (429)
                      +++.|++++|.++.+|..+  +++|+.|++++|.++.+|   ..+++|++|++++|.++.+|. +..  +|+.|++++|.
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence            8999999999999888765  378999999999999888   557999999999999999887 554  99999999999


Q ss_pred             CccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCC
Q 014200          265 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT  344 (429)
Q Consensus       265 l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (429)
                      +++++.  ...+|+.|++++|.++++|.   .+++|+.|++++|.++.++.  +.                         
T Consensus       132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~-------------------------  179 (571)
T 3cvr_A          132 LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP-------------------------  179 (571)
T ss_dssp             CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC-------------------------
T ss_pred             CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh-------------------------
Confidence            999877  55679999999999999887   67899999999999987765  21                         


Q ss_pred             hhhHHhhhhccccccccccccCCccccCChhhhccCCC-------cEEeCCCCccccCChhhcccccceeeccccCCCcc
Q 014200          345 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI-------TKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKE  417 (429)
Q Consensus       345 ~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L-------~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i  417 (429)
                                  ++|+.|++++|+|+.+|. +..  +|       +.|+|++|+|+.+|..+..+++|++|+  +++|++
T Consensus       180 ------------~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~--L~~N~l  242 (571)
T 3cvr_A          180 ------------ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTII--LEDNPL  242 (571)
T ss_dssp             ------------TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEE--CCSSSC
T ss_pred             ------------CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEE--eeCCcC
Confidence                        378999999999999998 543  77       999999999999999999999999999  999999


Q ss_pred             cc-cccc
Q 014200          418 SC-ISGC  423 (429)
Q Consensus       418 ~~-i~~~  423 (429)
                      ++ +|+.
T Consensus       243 ~~~~p~~  249 (571)
T 3cvr_A          243 SSRIRES  249 (571)
T ss_dssp             CHHHHHH
T ss_pred             CCcCHHH
Confidence            88 5543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=4e-20  Score=169.45  Aligned_cols=219  Identities=17%  Similarity=0.144  Sum_probs=122.4

Q ss_pred             CCCEEECCCCCCCC--cch--hhhCCCCCcEeecCCCcCcc-CCccc--cCCCCcCEEecCCCCCCcC-C----ccccCC
Q 014200           69 LLTVLNVSHNKLSE--LPA--AIGELHMLKSLDVSFNSIMK-IPDEI--GSATALVKFDCSSNQLKEL-P----SSLGRC  136 (429)
Q Consensus        69 ~L~~L~l~~~~i~~--~~~--~l~~l~~L~~L~l~~~~i~~-l~~~~--~~~~~L~~L~l~~~~l~~~-~----~~~~~~  136 (429)
                      .++.+.+.++.+..  +..  .+..+++|++|++++|.+.. .|..+  ..+++|++|++++|.+... +    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            45556665555441  111  12234456666666665552 33334  5566666666666665531 1    123345


Q ss_pred             CCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccc---cC-hhhhhcccccceeecCCccCCcCCc----cccCCc
Q 014200          137 LNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTV---LS-NNLIASWTMLTELIASKNLLNGMPE----TIGSLS  207 (429)
Q Consensus       137 ~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~---~~-~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~  207 (429)
                      ++|++|++++|.+..++ ..+..+++|++|++++|.+..   ++ ...+..+++|++|++++|.++.++.    .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            66666666666665443 445566666666666665432   11 1112455666666666666654433    134556


Q ss_pred             cCCeEeccCCcCccC-Ccccccc---CCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEcc
Q 014200          208 RLIRLDLHQNRILSI-PSSISGC---CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS  283 (429)
Q Consensus       208 ~L~~L~l~~~~~~~~-~~~~~~~---~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~  283 (429)
                      +|++|++++|.+... |..+..+   ++|++|++++|.++.+|..+.  ++|++|++++|.+++++.....++|+.|+++
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~  302 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD  302 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence            666777777666654 4444444   567777777777766665543  5677777777777665443333457777777


Q ss_pred             CCCCCC
Q 014200          284 NNSLSG  289 (429)
Q Consensus       284 ~n~l~~  289 (429)
                      +|.+++
T Consensus       303 ~N~l~~  308 (310)
T 4glp_A          303 GNPFLV  308 (310)
T ss_dssp             STTTSC
T ss_pred             CCCCCC
Confidence            776653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=7.1e-21  Score=176.63  Aligned_cols=241  Identities=16%  Similarity=0.191  Sum_probs=139.3

Q ss_pred             ccEEEcCCCCCCccchhccCC--CCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCcc--CCccccCCCCcCEEecC
Q 014200           47 LQKLILAHNNIEKLKEDLRNL--PLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK--IPDEIGSATALVKFDCS  122 (429)
Q Consensus        47 L~~L~l~~~~i~~l~~~~~~~--~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~  122 (429)
                      +++++++++.+.  +..+..+  ++++.|+++++.+...+..+..+++|++|++++|.+..  ++..+..+++|++|+++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            556666655554  2233333  56666666666655444444456666666666665542  44555666666666666


Q ss_pred             CCCCC-cCCccccCCCCCCEEEcCCC-ccc--cCCccccccCCCcEEEccCC-cccccC-hhhhhccc-ccceeecCCcc
Q 014200          123 SNQLK-ELPSSLGRCLNLSDFKASNN-CIT--SLPEDLADCSKMSKLDVEGN-KLTVLS-NNLIASWT-MLTELIASKNL  195 (429)
Q Consensus       123 ~~~l~-~~~~~~~~~~~L~~L~l~~~-~~~--~~~~~l~~~~~L~~L~l~~~-~~~~~~-~~~~~~~~-~L~~L~l~~~~  195 (429)
                      +|.+. ..+..+..+++|++|++++| .++  .++..+..+++|++|++++| .++... ...+..++ +|++|++++|.
T Consensus       127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            66655 33445555666666666666 444  24444556666777777666 555321 22355566 66666666663


Q ss_pred             --C--CcCCccccCCccCCeEeccCCc-Cc-cCCccccccCCCcEEEcCCCC-CCc-cChhhcCCCCCCEEECCCCcCcc
Q 014200          196 --L--NGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYMGNNA-LSA-LPAELGKLSKLGTLDLHSNQLKE  267 (429)
Q Consensus       196 --l--~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l~~n~-i~~-~~~~~~~~~~L~~L~l~~n~l~~  267 (429)
                        +  ..++..+..+++|+.|++++|. ++ ..+..+..+++|++|++++|. ++. ....+..+++|+.|++++| +..
T Consensus       207 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~  285 (336)
T 2ast_B          207 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD  285 (336)
T ss_dssp             GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT
T ss_pred             ccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH
Confidence              3  2344455566777777777776 44 344566677777777777773 321 1234666777777777777 443


Q ss_pred             ccchhhccccCEEEccCCCCCCC
Q 014200          268 YCVEACQLRLSVLDLSNNSLSGL  290 (429)
Q Consensus       268 ~~~~~~~~~L~~l~l~~n~l~~l  290 (429)
                      -........++.|++++|.+++.
T Consensus       286 ~~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          286 GTLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             TCHHHHHHHSTTSEESCCCSCCT
T ss_pred             HHHHHHHhhCcceEEecccCccc
Confidence            22222223366677777777763

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.82  E-value=2.7e-20  Score=170.62  Aligned_cols=222  Identities=18%  Similarity=0.191  Sum_probs=179.6

Q ss_pred             CCCCCcEeecCCCcCcc--CCc--cccCCCCcCEEecCCCCCC-cCCccc--cCCCCCCEEEcCCCccccC-C----ccc
Q 014200           89 ELHMLKSLDVSFNSIMK--IPD--EIGSATALVKFDCSSNQLK-ELPSSL--GRCLNLSDFKASNNCITSL-P----EDL  156 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~--l~~--~~~~~~~L~~L~l~~~~l~-~~~~~~--~~~~~L~~L~l~~~~~~~~-~----~~l  156 (429)
                      ....++.+.+.++.+..  +..  .+..+++|++|++++|.+. ..|..+  ..+++|++|++++|.++.. +    ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            34457888888876651  111  1223577999999999988 445555  7899999999999998843 2    234


Q ss_pred             cccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCc---C--CccccCCccCCeEeccCCcCccCCc----ccc
Q 014200          157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG---M--PETIGSLSRLIRLDLHQNRILSIPS----SIS  227 (429)
Q Consensus       157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~--~~~~~~~~~L~~L~l~~~~~~~~~~----~~~  227 (429)
                      ..+++|++|++++|.+..++...+..+++|++|++++|.+..   +  +..+..+++|+.|++++|.++.++.    .+.
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            568999999999999998888778899999999999998743   2  3344688999999999999986554    257


Q ss_pred             ccCCCcEEEcCCCCCCcc-ChhhcCC---CCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEE
Q 014200          228 GCCSLAEFYMGNNALSAL-PAELGKL---SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKL  303 (429)
Q Consensus       228 ~~~~L~~L~l~~n~i~~~-~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L  303 (429)
                      .+++|++|++++|.++.. |..+..+   ++|++|++++|.++.++.... .+|++|++++|+++++|. +..+++|+.|
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L  299 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLSSNRLNRAPQ-PDELPEVDNL  299 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence            789999999999999976 7666665   799999999999998876654 689999999999999866 7889999999


Q ss_pred             EccCCCCCC
Q 014200          304 LLTGNPLRT  312 (429)
Q Consensus       304 ~l~~~~i~~  312 (429)
                      ++++|++++
T Consensus       300 ~L~~N~l~~  308 (310)
T 4glp_A          300 TLDGNPFLV  308 (310)
T ss_dssp             ECSSTTTSC
T ss_pred             ECcCCCCCC
Confidence            999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=7.3e-21  Score=178.26  Aligned_cols=197  Identities=20%  Similarity=0.229  Sum_probs=105.1

Q ss_pred             CCccEEEcCCCCCCccc-----hhccCCC-CCCEEECCCCCCCCc-chhhhCC-----CCCcEeecCCCcCccCCcc---
Q 014200           45 VDLQKLILAHNNIEKLK-----EDLRNLP-LLTVLNVSHNKLSEL-PAAIGEL-----HMLKSLDVSFNSIMKIPDE---  109 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~-----~~~~~~~-~L~~L~l~~~~i~~~-~~~l~~l-----~~L~~L~l~~~~i~~l~~~---  109 (429)
                      ++|++|++++|.++..+     ..+.+++ +|++|++++|.++.. +..+..+     ++|++|++++|.+...+..   
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            44777777777776544     3466666 677777777776644 2334332     7777777777776643322   


Q ss_pred             --ccCC-CCcCEEecCCCCCCcCCc-----cccC-CCCCCEEEcCCCcccc-----CCccccccC-CCcEEEccCCcccc
Q 014200          110 --IGSA-TALVKFDCSSNQLKELPS-----SLGR-CLNLSDFKASNNCITS-----LPEDLADCS-KMSKLDVEGNKLTV  174 (429)
Q Consensus       110 --~~~~-~~L~~L~l~~~~l~~~~~-----~~~~-~~~L~~L~l~~~~~~~-----~~~~l~~~~-~L~~L~l~~~~~~~  174 (429)
                        +..+ ++|++|++++|.+...+.     .+.. .++|++|++++|.++.     ++..+...+ +|++|++++|.++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              3444 667777777776664432     1222 2466667776666652     223333443 66666666666655


Q ss_pred             cChhhhhc----c-cccceeecCCccCCc-----CCccccC-CccCCeEeccCCcCccCC-----ccccccCCCcEEEcC
Q 014200          175 LSNNLIAS----W-TMLTELIASKNLLNG-----MPETIGS-LSRLIRLDLHQNRILSIP-----SSISGCCSLAEFYMG  238 (429)
Q Consensus       175 ~~~~~~~~----~-~~L~~L~l~~~~l~~-----~~~~~~~-~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~  238 (429)
                      .+...+..    . ++|++|++++|.++.     ++..+.. .++|+.|++++|.++..+     ..+..+++|+.|+++
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            44432222    2 355555555555543     2222222 234555555555544321     123344445555555


Q ss_pred             CCC
Q 014200          239 NNA  241 (429)
Q Consensus       239 ~n~  241 (429)
                      +|.
T Consensus       262 ~n~  264 (362)
T 3goz_A          262 YDI  264 (362)
T ss_dssp             HHH
T ss_pred             cCC
Confidence            544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=5.8e-19  Score=156.56  Aligned_cols=128  Identities=27%  Similarity=0.400  Sum_probs=75.9

Q ss_pred             ccceeecCCccCCcCCccccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCCCCccC-hhhcCCCCCCEEECCC
Q 014200          185 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHS  262 (429)
Q Consensus       185 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~  262 (429)
                      ..++++++++.++.+|..+.  +.++.|++++|.+..++ ..+..+++|++|++++|.++.++ ..+..+++|++|++++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            45667777777776665443  46777777777776553 35666777777777777766553 3456666677776666


Q ss_pred             CcCccccchhh--ccccCEEEccCCCCCCCCcc-ccCCCCCCEEEccCCCCCCcc
Q 014200          263 NQLKEYCVEAC--QLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLR  314 (429)
Q Consensus       263 n~l~~~~~~~~--~~~L~~l~l~~n~l~~l~~~-l~~~~~L~~L~l~~~~i~~~~  314 (429)
                      |.++.++...+  ..+|++|++++|.+++++.. +.++++|+.|++++|.++.++
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence            66665554322  22355555555555554332 455555555555555554443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.81  E-value=8.9e-19  Score=155.36  Aligned_cols=172  Identities=26%  Similarity=0.382  Sum_probs=106.4

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hh
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AI   87 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l   87 (429)
                      ..+.++++++.++++|..+.               +++++|+++++.++.++. .|.++++|++|++++|.++.++. .+
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~---------------~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   79 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP---------------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF   79 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC---------------TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             CCeEEecCCCCccccCCCCC---------------CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence            45667777777777766553               236777777777765554 46667777777777777665543 46


Q ss_pred             hCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCcc-ccCCCCCCEEEcCCCccccCCc-cccccCCCcE
Q 014200           88 GELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPE-DLADCSKMSK  164 (429)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~  164 (429)
                      .++++|++|++++|.+..++. .+..+++|++|++++|++..++.. +..+++|++|++++|.++.++. .+..+++|+.
T Consensus        80 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  159 (251)
T 3m19_A           80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT  159 (251)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCE
Confidence            667777777777776665543 356666777777776666665543 4556666666666666665543 3555666666


Q ss_pred             EEccCCcccccChhhhhcccccceeecCCccC
Q 014200          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  196 (429)
                      |++++|.+..++...+..+++|+.+++++|.+
T Consensus       160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            66666666555544445555555555555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=4.4e-19  Score=165.33  Aligned_cols=233  Identities=20%  Similarity=0.236  Sum_probs=169.7

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCC-Ccch-hhh
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLS-ELPA-AIG   88 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~-~~~~-~l~   88 (429)
                      ++++++++++++||..++               +++++|++++|+++.++. .|+++++|++|++++|.+. .+|. +|.
T Consensus        12 ~~v~C~~~~Lt~iP~~l~---------------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~   76 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP---------------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   76 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC---------------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred             CEEEecCCCCCccCcCcC---------------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence            678899999999988764               358999999999999986 5899999999999999875 4554 778


Q ss_pred             CCCCCcE-eecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCC-CccccCCc-ccccc-CCC
Q 014200           89 ELHMLKS-LDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASN-NCITSLPE-DLADC-SKM  162 (429)
Q Consensus        89 ~l~~L~~-L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~-~~~~~~~~-~l~~~-~~L  162 (429)
                      +++++.+ +.+..|.+..++ ..+..+++|++|++++|++..++. .+....++..+++.+ +.+..++. .+..+ ..+
T Consensus        77 ~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l  156 (350)
T 4ay9_X           77 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  156 (350)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             cchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhh
Confidence            8888776 445567888774 557889999999999998887764 344555677777755 45665543 34443 467


Q ss_pred             cEEEccCCcccccChhhhhcccccceeecC-CccCCcCCc-cccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCC
Q 014200          163 SKLDVEGNKLTVLSNNLIASWTMLTELIAS-KNLLNGMPE-TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN  240 (429)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n  240 (429)
                      +.|++++|.++.++...+ ...+++++.+. +|.++.+|. .+..+++|+.|++++|.++.+|.  ..+.+|+.|.+.++
T Consensus       157 ~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~  233 (350)
T 4ay9_X          157 VILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARST  233 (350)
T ss_dssp             EEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTC
T ss_pred             hhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccC
Confidence            888888888888776644 34577888876 466777764 46778888888888888887765  33556666665554


Q ss_pred             -CCCccChhhcCCCCCCEEECCCC
Q 014200          241 -ALSALPAELGKLSKLGTLDLHSN  263 (429)
Q Consensus       241 -~i~~~~~~~~~~~~L~~L~l~~n  263 (429)
                       .++.+| .+..+++|+.+++.++
T Consensus       234 ~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          234 YNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CCcCcCC-CchhCcChhhCcCCCC
Confidence             455666 3677778888887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=5.8e-19  Score=159.96  Aligned_cols=169  Identities=22%  Similarity=0.346  Sum_probs=88.8

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCC
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~  123 (429)
                      +++|++|+++++.+..++ .+..+++|++|++++|.++.++. +.++++|++|++++|.+..++. +..+++|++|++++
T Consensus        45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEH  121 (291)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTT
T ss_pred             cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCC
Confidence            345666666666665554 35556666666666666665544 5566666666666665555433 55556666666666


Q ss_pred             CCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (429)
Q Consensus       124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  203 (429)
                      |++..+ ..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+..+++  +..+++|+.|++++|.++.++. +
T Consensus       122 n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l  196 (291)
T 1h6t_A          122 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L  196 (291)
T ss_dssp             SCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G
T ss_pred             CcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h
Confidence            655554 2344555555555555555544 344445555555555555444433  4444444444444444444332 3


Q ss_pred             cCCccCCeEeccCCcCc
Q 014200          204 GSLSRLIRLDLHQNRIL  220 (429)
Q Consensus       204 ~~~~~L~~L~l~~~~~~  220 (429)
                      ..+++|+.|++++|++.
T Consensus       197 ~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          197 AGLKNLDVLELFSQECL  213 (291)
T ss_dssp             TTCTTCSEEEEEEEEEE
T ss_pred             ccCCCCCEEECcCCccc
Confidence            44444444444444433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=6.7e-20  Score=170.02  Aligned_cols=248  Identities=15%  Similarity=0.176  Sum_probs=190.4

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCC--cchh
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAA   86 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~--~~~~   86 (429)
                      ...+.+|++++.+.   +..+..+.          .++++.++++++.+...+..+..+++|++|++++|.+..  ++..
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~----------~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLL----------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHH----------HTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             hhheeeccccccCC---HHHHHhhh----------hccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence            45789999998875   33443321          167999999999988776667789999999999999873  6778


Q ss_pred             hhCCCCCcEeecCCCcCc-cCCccccCCCCcCEEecCCC-CCC--cCCccccCCCCCCEEEcCCC-cccc--CCcccccc
Q 014200           87 IGELHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLK--ELPSSLGRCLNLSDFKASNN-CITS--LPEDLADC  159 (429)
Q Consensus        87 l~~l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~-~l~--~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~l~~~  159 (429)
                      +..+++|++|++++|.+. ..+..+..+++|++|++++| .++  .++..+..+++|++|++++| .++.  ++..+..+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            899999999999999877 45667888999999999999 677  35666788999999999999 8873  56668888


Q ss_pred             C-CCcEEEccCCc--ccc-cChhhhhcccccceeecCCcc-CC-cCCccccCCccCCeEeccCCc-Ccc-CCccccccCC
Q 014200          160 S-KMSKLDVEGNK--LTV-LSNNLIASWTMLTELIASKNL-LN-GMPETIGSLSRLIRLDLHQNR-ILS-IPSSISGCCS  231 (429)
Q Consensus       160 ~-~L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~-l~-~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~  231 (429)
                      + +|++|++++|.  ++. ..+..+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. +.. ....+..+++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~  273 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT  273 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence            9 99999999994  432 112346788999999999998 54 455677888999999999995 321 1235788999


Q ss_pred             CcEEEcCCCCCCc-cChhhcCCCCCCEEECCCCcCccccchh
Q 014200          232 LAEFYMGNNALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEA  272 (429)
Q Consensus       232 L~~L~l~~n~i~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~  272 (429)
                      |++|++++| ++. ....+.  ..+..|++++|.+++..+..
T Consensus       274 L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          274 LKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             CCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred             CCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence            999999999 542 222222  23555568999988765543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=1.3e-18  Score=162.10  Aligned_cols=233  Identities=19%  Similarity=0.208  Sum_probs=144.2

Q ss_pred             cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCc-cCCc-cccCCCCcCE-EecCC
Q 014200           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIM-KIPD-EIGSATALVK-FDCSS  123 (429)
Q Consensus        48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~-~l~~-~~~~~~~L~~-L~l~~  123 (429)
                      ++++.++++++.+|..+  .+++++|++++|.|+.+|. +|+++++|++|++++|.+. .++. .|.+++++++ +.+..
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            67888888899998766  3689999999999998876 7899999999999999875 4543 4678888776 44566


Q ss_pred             CCCCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccC-CcccccChhhhhccc-ccceeecCCccCCcC
Q 014200          124 NQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEG-NKLTVLSNNLIASWT-MLTELIASKNLLNGM  199 (429)
Q Consensus       124 ~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~  199 (429)
                      |++..++ ..+..+++|++|++++|.+..++. .+....++..+++.+ +.+..++...+..+. .++.|++++|.++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i  169 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI  169 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred             CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence            7888764 567788888888888888876653 344455666777654 345555544333332 344455555554444


Q ss_pred             CccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCC-CCCCccCh-hhcCCCCCCEEECCCCcCccccchhhcccc
Q 014200          200 PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN-NALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRL  277 (429)
Q Consensus       200 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~i~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L  277 (429)
                      +.....                       ..+++++++.+ |.++.+|. +|+.+++|+.|++++|.++.++...+ .+|
T Consensus       170 ~~~~f~-----------------------~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~-~~L  225 (350)
T 4ay9_X          170 HNSAFN-----------------------GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL-ENL  225 (350)
T ss_dssp             CTTSST-----------------------TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC-TTC
T ss_pred             Chhhcc-----------------------ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh-ccc
Confidence            433333                       34444455442 34444433 34555555555555555555544322 235


Q ss_pred             CEEEccCC-CCCCCCccccCCCCCCEEEccC
Q 014200          278 SVLDLSNN-SLSGLPPEIGKMTTLRKLLLTG  307 (429)
Q Consensus       278 ~~l~l~~n-~l~~l~~~l~~~~~L~~L~l~~  307 (429)
                      ++|.+.++ +++.+|. +.++++|+.+++.+
T Consensus       226 ~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          226 KKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             CEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             hHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            55554433 3444543 55666666666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=2.6e-18  Score=155.60  Aligned_cols=176  Identities=23%  Similarity=0.305  Sum_probs=156.4

Q ss_pred             HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (429)
Q Consensus         5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~   84 (429)
                      +..+++++.|+++++.+.+++.  +.            .+++|++|++++|.++.++. +..+++|++|++++|.++.++
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~~~--~~------------~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~  106 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSVQG--IQ------------YLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLS  106 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGG
T ss_pred             hhhcCcccEEEccCCCcccChh--Hh------------cCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCCh
Confidence            4678899999999999998854  33            37889999999999998886 999999999999999999875


Q ss_pred             hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (429)
Q Consensus        85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~  164 (429)
                      . +..+++|++|++++|.+..+ +.+..+++|++|++++|++..+ ..+..+++|++|++++|.++.++. +..+++|+.
T Consensus       107 ~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~  182 (291)
T 1h6t_A          107 S-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQN  182 (291)
T ss_dssp             G-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             h-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCE
Confidence            4 89999999999999999987 4688899999999999999988 678899999999999999998765 888999999


Q ss_pred             EEccCCcccccChhhhhcccccceeecCCccCCcCCc
Q 014200          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE  201 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  201 (429)
                      |++++|.+..++.  +..+++|+.|++++|.+...|.
T Consensus       183 L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          183 LYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             EECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCCE
T ss_pred             EECCCCcCCCChh--hccCCCCCEEECcCCcccCCcc
Confidence            9999999998754  8889999999999998876553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=9e-19  Score=156.20  Aligned_cols=173  Identities=20%  Similarity=0.236  Sum_probs=139.0

Q ss_pred             cccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECC
Q 014200          182 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH  261 (429)
Q Consensus       182 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~  261 (429)
                      .+..+..+++.++.++.++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|.++.+++ +..+++|+.|+++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence            4456677778888777765 4667888899999999888877 67888999999999999988876 8889999999999


Q ss_pred             CCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccc
Q 014200          262 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA  341 (429)
Q Consensus       262 ~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (429)
                      +|.+++++.... .+|++|++++|.+++++ .+.++++|+.|++++|.+++++.                          
T Consensus        94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~--------------------------  145 (263)
T 1xeu_A           94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM--------------------------  145 (263)
T ss_dssp             SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG--------------------------
T ss_pred             CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH--------------------------
Confidence            999888766555 67999999999998875 48889999999999998876531                          


Q ss_pred             cCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCCh
Q 014200          342 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP  397 (429)
Q Consensus       342 ~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~  397 (429)
                                 ....++|+.|++++|.++.+ ..+..+++|+.|++++|.++..|.
T Consensus       146 -----------l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          146 -----------LGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             -----------GGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             -----------HccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCcc
Confidence                       11135788899999988877 567788999999999998886543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.1e-17  Score=165.81  Aligned_cols=187  Identities=19%  Similarity=0.274  Sum_probs=136.1

Q ss_pred             EccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc
Q 014200          166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL  245 (429)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~  245 (429)
                      .+..+.+..+..  ...++.|+.|+++++.+..++ .+..+++|+.|++++|.+..++. +..+++|+.|++++|.++.+
T Consensus        27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l  102 (605)
T 1m9s_A           27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL  102 (605)
T ss_dssp             HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             hccCCCcccccc--hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence            344444443322  456677777777777777665 36677788888888887777655 77788888888888887776


Q ss_pred             ChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHH
Q 014200          246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL  325 (429)
Q Consensus       246 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~  325 (429)
                      + .+..+++|+.|++++|.+..++......+|+.|++++|.++++ ..+..+++|+.|++++|.+..++.  +       
T Consensus       103 ~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l-------  171 (605)
T 1m9s_A          103 S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--L-------  171 (605)
T ss_dssp             T-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--G-------
T ss_pred             h-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--h-------
Confidence            5 5777888888888888888776555555688888888888877 567888888888888888765432  1       


Q ss_pred             HHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCC
Q 014200          326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP  396 (429)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~  396 (429)
                                                  ..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.+++.|
T Consensus       172 ----------------------------~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          172 ----------------------------AGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             ----------------------------TTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             ----------------------------ccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence                                        11357788888888888775 5778888999999988887743

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=8.8e-18  Score=149.77  Aligned_cols=167  Identities=23%  Similarity=0.272  Sum_probs=89.5

Q ss_pred             hhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhh
Q 014200            8 ARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAI   87 (429)
Q Consensus         8 ~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l   87 (429)
                      +.++..++++++.+++++.  +..            +++|++|+++++.++.++ .+..+++|+.|++++|.++.++. +
T Consensus        18 l~~l~~l~l~~~~i~~~~~--~~~------------l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l   81 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVS--QKE------------LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-L   81 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEEC--HHH------------HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-G
T ss_pred             HHHHHHHHhcCCCcccccc--hhh------------cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-h
Confidence            3445555566666555541  221            445666666666666555 45556666666666666665554 5


Q ss_pred             hCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEc
Q 014200           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDV  167 (429)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l  167 (429)
                      .++++|++|++++|.+..++....  ++|++|++++|++..++ .+..+++|++|++++|.++.++ .+..+++|+.|++
T Consensus        82 ~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           82 KDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDL  157 (263)
T ss_dssp             TTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEEC
T ss_pred             ccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEEC
Confidence            566666666666666655544322  55666666666555543 3455555555555555555443 3445555555555


Q ss_pred             cCCcccccChhhhhcccccceeecCCccC
Q 014200          168 EGNKLTVLSNNLIASWTMLTELIASKNLL  196 (429)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  196 (429)
                      ++|.+...  ..+..+++|+.+++++|.+
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence            55555444  1234444444444444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1e-17  Score=166.13  Aligned_cols=171  Identities=23%  Similarity=0.339  Sum_probs=110.4

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCC
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~  123 (429)
                      +++|+.|+++++.+..++ .+..+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence            455667777766666665 46666777777777776666654 666777777777777666554 466666777777777


Q ss_pred             CCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccc
Q 014200          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI  203 (429)
Q Consensus       124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  203 (429)
                      |.+..+ ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.+..+++  +..+++|+.|++++|.+..++ .+
T Consensus       119 N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l  193 (605)
T 1m9s_A          119 NGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-AL  193 (605)
T ss_dssp             SCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GG
T ss_pred             CCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HH
Confidence            666665 3455666677777777666655 455666667777776666665544  566666666666666666553 35


Q ss_pred             cCCccCCeEeccCCcCccC
Q 014200          204 GSLSRLIRLDLHQNRILSI  222 (429)
Q Consensus       204 ~~~~~L~~L~l~~~~~~~~  222 (429)
                      ..+++|+.|++++|.+...
T Consensus       194 ~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          194 AGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             TTCTTCSEEECCSEEEECC
T ss_pred             ccCCCCCEEEccCCcCcCC
Confidence            5666666666666665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.9e-17  Score=143.50  Aligned_cols=154  Identities=25%  Similarity=0.387  Sum_probs=99.3

Q ss_pred             EEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCC
Q 014200          234 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPL  310 (429)
Q Consensus       234 ~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i  310 (429)
                      .++++++.++.+|..+.  ++++.|++++|.++.++...+.  .+|++|++++|.++.+ +..+.++++|+.|++++|.+
T Consensus        15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            34444444444443322  3455555555555544432221  2355555555555553 55667777777777777777


Q ss_pred             CCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC-ChhhhccCCCcEEeCCC
Q 014200          311 RTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSR  389 (429)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~  389 (429)
                      +.++...|.+.                                   ++|+.|++++|.++.+ +..+..+++|++|+|++
T Consensus        93 ~~l~~~~f~~l-----------------------------------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  137 (220)
T 2v9t_B           93 TELPKSLFEGL-----------------------------------FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD  137 (220)
T ss_dssp             CCCCTTTTTTC-----------------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CccCHhHccCC-----------------------------------CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence            76665544332                                   4677778888877765 45566788899999999


Q ss_pred             CccccCC-hhhcccccceeeccccCCCccccccccccccc
Q 014200          390 NSIQELP-PELSSCASLQVKFSDLVTNKESCISGCYLYWN  428 (429)
Q Consensus       390 n~i~~~~-~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~  428 (429)
                      |+|++++ ..+..+++|++|+  +++|++.|  +|-+.|+
T Consensus       138 N~l~~~~~~~~~~l~~L~~L~--L~~N~~~c--~c~l~~l  173 (220)
T 2v9t_B          138 NKLQTIAKGTFSPLRAIQTMH--LAQNPFIC--DCHLKWL  173 (220)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEE--CCSSCEEC--SGGGHHH
T ss_pred             CcCCEECHHHHhCCCCCCEEE--eCCCCcCC--CCccHHH
Confidence            9888854 4577888899998  99999888  6777774

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=2e-17  Score=143.43  Aligned_cols=112  Identities=24%  Similarity=0.442  Sum_probs=71.9

Q ss_pred             cCEEEccCCCCCCCCc-cccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200          277 LSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL  355 (429)
Q Consensus       277 L~~l~l~~n~l~~l~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (429)
                      |++|++++|.+++++. .+.++++|+.|++++|.++.++...|.+                                   
T Consensus        59 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------------------  103 (220)
T 2v70_A           59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG-----------------------------------  103 (220)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-----------------------------------
T ss_pred             CCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-----------------------------------
Confidence            5555555555554332 4556666666666666665554433322                                   


Q ss_pred             ccccccccccCCccccC-ChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccccccccccc
Q 014200          356 SVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESCISGCYLYW  427 (429)
Q Consensus       356 ~~~L~~l~l~~~~i~~~-~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~  427 (429)
                      .++|+.|++++|.++.+ |..+..+++|++|+|++|++++ .|..+..+++|++|+  +++|+++|  +|-+.|
T Consensus       104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~c--~c~l~~  173 (220)
T 2v70_A          104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN--LLANPFNC--NCYLAW  173 (220)
T ss_dssp             CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE--CCSCCEEC--SGGGHH
T ss_pred             CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE--ecCcCCcC--CCchHH
Confidence            13566666666666644 5556677888888888888887 467777888888888  88888887  555555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=3.6e-17  Score=140.67  Aligned_cols=173  Identities=22%  Similarity=0.322  Sum_probs=125.9

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhC
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGE   89 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~   89 (429)
                      +.++++++.++.+|...+               +++++|+++++.++.++. .|..+++|++|++++|.++.++. .+..
T Consensus        10 ~~v~c~~~~l~~~p~~~~---------------~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~   74 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIP---------------AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK   74 (208)
T ss_dssp             TEEECCSSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             CEEEecCCCccCCCCCCC---------------CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCC
Confidence            567788888888876553               358888888888887765 36788888888888888887765 5678


Q ss_pred             CCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEE
Q 014200           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLD  166 (429)
Q Consensus        90 l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~  166 (429)
                      +++|++|++++|.+..++.. +.++++|++|++++|++..++.. +..+++|++|++++|.++.++.. +..+++|+.|+
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence            88888888888888877654 57788888888888888876653 56778888888888877766543 66777888888


Q ss_pred             ccCCcccccChhhhhcccccceeecCCccCC-cCCccccCC
Q 014200          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSL  206 (429)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~  206 (429)
                      +++|.+.       ..++.++.++++.|.++ .+|..+..+
T Consensus       155 l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          155 LHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             CCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ecCCCee-------cCCCCHHHHHHHHHhCCceeeccCccc
Confidence            8777543       23456667777666664 345544443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=3.4e-17  Score=153.15  Aligned_cols=171  Identities=25%  Similarity=0.302  Sum_probs=141.2

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchh-cc-CCCCCCEEECCCCCCCCcch-hhh
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED-LR-NLPLLTVLNVSHNKLSELPA-AIG   88 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~-~~~~L~~L~l~~~~i~~~~~-~l~   88 (429)
                      +.+++++++++.+|..++.               .++.|++++|.++.++.. +. .+++|+.|++++|.+..++. +|.
T Consensus        21 ~~l~c~~~~l~~iP~~~~~---------------~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~   85 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLPS---------------YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV   85 (361)
T ss_dssp             TEEECCSSCCSSCCSSCCT---------------TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CEEEeCCCCcCccCccCCC---------------CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc
Confidence            5789999999999886643               488999999999988764 65 89999999999999997764 789


Q ss_pred             CCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccCCccc----cccCCC
Q 014200           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDL----ADCSKM  162 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l----~~~~~L  162 (429)
                      ++++|++|++++|.+..++. .+.++++|++|++++|++..+ +..+..+++|++|++++|.++.++..+    ..+++|
T Consensus        86 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L  165 (361)
T 2xot_A           86 PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKL  165 (361)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTC
T ss_pred             CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcC
Confidence            99999999999999887755 478899999999999999866 457888899999999999998887654    568899


Q ss_pred             cEEEccCCcccccChhhhhcccc--cceeecCCccCC
Q 014200          163 SKLDVEGNKLTVLSNNLIASWTM--LTELIASKNLLN  197 (429)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~l~  197 (429)
                      +.|++++|.+..++...+..++.  ++.+++++|.+.
T Consensus       166 ~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          166 MLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            99999999998888777777776  477888888663

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=3.8e-17  Score=152.79  Aligned_cols=179  Identities=25%  Similarity=0.342  Sum_probs=104.5

Q ss_pred             ceeecCCccCCcCCccccCCccCCeEeccCCcCccCCc-ccc-ccCCCcEEEcCCCCCCccC-hhhcCCCCCCEEECCCC
Q 014200          187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SIS-GCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSN  263 (429)
Q Consensus       187 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~L~l~~n  263 (429)
                      +.++++++.++.+|..+.  +.++.|++++|.++.++. .+. .+++|++|++++|.++.++ ..+..+++|+.|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            345555555555554332  335556666555554432 233 5555555555555555443 23455555555555555


Q ss_pred             cCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccC
Q 014200          264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST  343 (429)
Q Consensus       264 ~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (429)
                      .++.++.                     ..+..+++|+.|++++|.++.++...|.+                       
T Consensus        99 ~l~~~~~---------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-----------------------  134 (361)
T 2xot_A           99 HLHTLDE---------------------FLFSDLQALEVLLLYNNHIVVVDRNAFED-----------------------  134 (361)
T ss_dssp             CCCEECT---------------------TTTTTCTTCCEEECCSSCCCEECTTTTTT-----------------------
T ss_pred             cCCcCCH---------------------HHhCCCcCCCEEECCCCcccEECHHHhCC-----------------------
Confidence            5444332                     23555666666666666665544333322                       


Q ss_pred             ChhhHHhhhhccccccccccccCCccccCChhh----hccCCCcEEeCCCCccccCC-hhhccccc--ceeeccccCCCc
Q 014200          344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEI----WEAGEITKLDLSRNSIQELP-PELSSCAS--LQVKFSDLVTNK  416 (429)
Q Consensus       344 ~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~----~~~~~L~~L~ls~n~i~~~~-~~l~~l~~--L~~L~~~l~~n~  416 (429)
                                  .++|+.|++++|.++.+|..+    ..+++|+.|||++|+|+++| ..+..++.  ++.|+  +++|+
T Consensus       135 ------------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~--l~~N~  200 (361)
T 2xot_A          135 ------------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY--LHNNP  200 (361)
T ss_dssp             ------------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEE--CCSSC
T ss_pred             ------------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEE--ecCCC
Confidence                        135666666666666666655    35788888888888888866 45667776  47888  99999


Q ss_pred             ccccccccccc
Q 014200          417 ESCISGCYLYW  427 (429)
Q Consensus       417 i~~i~~~~~~~  427 (429)
                      +.|  +|-++|
T Consensus       201 ~~C--~C~l~~  209 (361)
T 2xot_A          201 LEC--DCKLYQ  209 (361)
T ss_dssp             EEC--CHHHHH
T ss_pred             ccC--CcCcHH
Confidence            888  676654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=2e-17  Score=140.94  Aligned_cols=153  Identities=11%  Similarity=0.136  Sum_probs=104.5

Q ss_pred             cccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCC-CCccccCCCCCCEEEc
Q 014200          227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLL  305 (429)
Q Consensus       227 ~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l  305 (429)
                      ..+++|++|++++|.++.++ .+..+++|++|++++|.+..++......+|++|++++|.+++ .+..+..+++|+.|++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            44555555555555555555 455556666666666655555433334456677777776665 4566778888888888


Q ss_pred             cCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCc-cccCChhhhccCCCcE
Q 014200          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMN-LSAIPSEIWEAGEITK  384 (429)
Q Consensus       306 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-i~~~~~~~~~~~~L~~  384 (429)
                      ++|.+++..        +..                           ....++|++|++++|. ++.++ .+..+++|++
T Consensus       120 s~n~i~~~~--------~~~---------------------------l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~  163 (197)
T 4ezg_A          120 SHSAHDDSI--------LTK---------------------------INTLPKVNSIDLSYNGAITDIM-PLKTLPELKS  163 (197)
T ss_dssp             CSSBCBGGG--------HHH---------------------------HTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCE
T ss_pred             cCCccCcHh--------HHH---------------------------HhhCCCCCEEEccCCCCccccH-hhcCCCCCCE
Confidence            888875421        111                           1123578889999987 77777 6888999999


Q ss_pred             EeCCCCccccCChhhcccccceeeccccCCCcccc
Q 014200          385 LDLSRNSIQELPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       385 L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      |++++|++++++ .+..+++|++|+  +++|+|++
T Consensus       164 L~l~~n~i~~~~-~l~~l~~L~~L~--l~~N~i~~  195 (197)
T 4ezg_A          164 LNIQFDGVHDYR-GIEDFPKLNQLY--AFSQTIGG  195 (197)
T ss_dssp             EECTTBCCCCCT-TGGGCSSCCEEE--ECBC----
T ss_pred             EECCCCCCcChH-HhccCCCCCEEE--eeCcccCC
Confidence            999999999987 688999999999  99999875

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=1e-16  Score=139.85  Aligned_cols=148  Identities=24%  Similarity=0.358  Sum_probs=108.2

Q ss_pred             cCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCcc-chhccCCCCCCEEECCCCCCCCcch-hhh
Q 014200           11 SGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLTVLNVSHNKLSELPA-AIG   88 (429)
Q Consensus        11 l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~i~~~~~-~l~   88 (429)
                      -+.+++++++++++|..+.               ++|++|++++|.++.+ +..|..+++|+.|++++|.++.++. .|.
T Consensus        21 ~~~v~c~~~~l~~ip~~~~---------------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~   85 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP---------------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD   85 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC---------------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCEeEccCCCcCccCCCCC---------------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcc
Confidence            3567777777777776553               3577888888877766 3457777888888888888777764 567


Q ss_pred             CCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEE
Q 014200           89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLD  166 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~  166 (429)
                      .+++|++|++++|.++.++.. +..+++|++|++++|++..+|..+..+++|++|++++|.++.++. .+..+++|+.|+
T Consensus        86 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  165 (229)
T 3e6j_A           86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY  165 (229)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence            778888888888877776544 567778888888888777777777777778888887777776653 466677777777


Q ss_pred             ccCCccc
Q 014200          167 VEGNKLT  173 (429)
Q Consensus       167 l~~~~~~  173 (429)
                      +++|.+.
T Consensus       166 l~~N~~~  172 (229)
T 3e6j_A          166 LFGNPWD  172 (229)
T ss_dssp             CTTSCBC
T ss_pred             eeCCCcc
Confidence            7777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.72  E-value=4.7e-16  Score=147.20  Aligned_cols=326  Identities=12%  Similarity=0.144  Sum_probs=215.2

Q ss_pred             cCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCC-ccccC
Q 014200           36 GEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGS  112 (429)
Q Consensus        36 ~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~-~~~~~  112 (429)
                      +...+|.+|.+|+.+.+.. .++.|++ +|.+|++|+.+++.++ ++.++. +|.++++|+.+.+..+ +..+. ..|.+
T Consensus        62 Ig~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             hHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            3445566788899999974 4777765 6899999999999754 666654 8889999998877654 44333 33555


Q ss_pred             CCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeec
Q 014200          113 ATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIA  191 (429)
Q Consensus       113 ~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  191 (429)
                      +.. ........ +..+ ...+..|++|+.+.+..+...--...|..+.+|+.+.+..+ +..++...+..+..|+.+.+
T Consensus       139 ~~~-~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~  215 (394)
T 4fs7_A          139 CDF-KEITIPEG-VTVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF  215 (394)
T ss_dssp             CCC-SEEECCTT-CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred             ccc-cccccCcc-ccccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence            543 33333222 2222 24677888999998876543322345778888998888655 66677777888888888877


Q ss_pred             CCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccch
Q 014200          192 SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE  271 (429)
Q Consensus       192 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  271 (429)
                      ..+.. .+.........|+.+.+......-...++..+..++.+.+..+...--...+..+..++.+......+..... 
T Consensus       216 ~~~~~-~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F-  293 (394)
T 4fs7_A          216 PNSLY-YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTF-  293 (394)
T ss_dssp             CTTCC-EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTT-
T ss_pred             CCCce-EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccc-
Confidence            66533 2233344556788888765433233456788888988888766443334567788888888776654332211 


Q ss_pred             hhccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHh
Q 014200          272 ACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT  350 (429)
Q Consensus       272 ~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (429)
                      ....+|+.+.+..+ ++.+ ..+|.+|++|+.+++.++ ++.++...|.+.                             
T Consensus       294 ~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c-----------------------------  342 (394)
T 4fs7_A          294 YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGC-----------------------------  342 (394)
T ss_dssp             TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTC-----------------------------
T ss_pred             cccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCC-----------------------------
Confidence            12234788877654 5554 345788888888888644 777776666653                             


Q ss_pred             hhhccccccccccccCCccccCCh-hhhccCCCcEEeCCCCccccCChhhcccccceee
Q 014200          351 MATRLSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPPELSSCASLQVK  408 (429)
Q Consensus       351 ~~~~~~~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L  408 (429)
                            .+|+.+++..+ ++.+.+ ++..|++|+++++..+ ++.+..++.+|++|+++
T Consensus       343 ------~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          343 ------TSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             ------TTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             ------CCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence                  47788888765 665543 4557888888888754 44455677788888765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=7.8e-17  Score=137.20  Aligned_cols=149  Identities=16%  Similarity=0.205  Sum_probs=118.4

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCcc-CCccccCCCCcCEEecC
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDCS  122 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~~~~L~~L~l~  122 (429)
                      +++|++|+++++.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. .+..+..+++|++|+++
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            566888888888888877 6788888888888888776654 67788888888888888874 56678888888888888


Q ss_pred             CCCCCc-CCccccCCCCCCEEEcCCCc-cccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC
Q 014200          123 SNQLKE-LPSSLGRCLNLSDFKASNNC-ITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN  197 (429)
Q Consensus       123 ~~~l~~-~~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  197 (429)
                      +|++.. .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+..++  .+..+++|+++++++|.+.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence            888874 45677788888888888887 77765 6788888899999888888766  3778888888888888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=138.58  Aligned_cols=147  Identities=19%  Similarity=0.292  Sum_probs=122.8

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch--hccCCCCCCEEECCCCCCCCcch-hhh
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE--DLRNLPLLTVLNVSHNKLSELPA-AIG   88 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~i~~~~~-~l~   88 (429)
                      +.++++++.++.+|..++.               .+++|++++|.++.++.  .|..+++|+.|++++|.++.++. +|.
T Consensus        14 ~~l~~s~n~l~~iP~~~~~---------------~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~   78 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQ---------------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE   78 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCT---------------TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CEeEeCCCCcccCccCCCC---------------CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhC
Confidence            5789999999988876643               37899999999987743  47889999999999999887765 788


Q ss_pred             CCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccC-CccccccCCCcEE
Q 014200           89 ELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKL  165 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L  165 (429)
                      ++++|++|++++|.+..++.. +.++++|++|++++|++..+ +..+..+++|++|++++|.++.+ |..+..+++|+.|
T Consensus        79 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A           79 GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            999999999999988877654 78899999999999998876 56788888999999999988866 6678888899999


Q ss_pred             EccCCccc
Q 014200          166 DVEGNKLT  173 (429)
Q Consensus       166 ~l~~~~~~  173 (429)
                      ++++|.+.
T Consensus       159 ~L~~N~l~  166 (220)
T 2v70_A          159 NLLANPFN  166 (220)
T ss_dssp             ECCSCCEE
T ss_pred             EecCcCCc
Confidence            99888776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=1.7e-16  Score=137.55  Aligned_cols=147  Identities=18%  Similarity=0.302  Sum_probs=119.2

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhhhC
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAIGE   89 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~~   89 (429)
                      +.+++++++++.+|..++               +++++|++++|.++.++. .|..+++|+.|++++|.+..+ |..|.+
T Consensus        14 ~~v~c~~~~l~~iP~~l~---------------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~   78 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP---------------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG   78 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC---------------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CEEEcCCCCcCcCCCccC---------------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC
Confidence            568888888888887654               358889999998888776 688888999999999988866 568888


Q ss_pred             CCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCCCCcC-CccccCCCCCCEEEcCCCccccCCc-cccccCCCcEEE
Q 014200           90 LHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQLKEL-PSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLD  166 (429)
Q Consensus        90 l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~  166 (429)
                      +++|++|++++|.+..+|.. +.++++|++|++++|++..+ +..+..+++|++|++++|.++.++. .+..+++|+.++
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  158 (220)
T 2v9t_B           79 LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH  158 (220)
T ss_dssp             CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence            89999999999888888765 57788899999988888866 4567788888888888888886654 477788888888


Q ss_pred             ccCCccc
Q 014200          167 VEGNKLT  173 (429)
Q Consensus       167 l~~~~~~  173 (429)
                      +++|.+.
T Consensus       159 L~~N~~~  165 (220)
T 2v9t_B          159 LAQNPFI  165 (220)
T ss_dssp             CCSSCEE
T ss_pred             eCCCCcC
Confidence            8888765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.70  E-value=3.1e-16  Score=134.79  Aligned_cols=173  Identities=20%  Similarity=0.280  Sum_probs=123.9

Q ss_pred             ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCC
Q 014200           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSN  124 (429)
Q Consensus        47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~  124 (429)
                      -+.++.+++.++.+|..+  .+++++|++++|.++.++. .+.++++|++|++++|.+..++.. +..+++|++|++++|
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            367888888888887654  4689999999999887765 578899999999999988877654 577888999999888


Q ss_pred             CCCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcc
Q 014200          125 QLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (429)
Q Consensus       125 ~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  202 (429)
                      ++..++.. +..+++|++|++++|.++.++.. +..+++|+.|++++|.+..++...+..+++|+++++++|.+.     
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-----  161 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-----  161 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence            88877653 56778888888888887766543 566777888888777777666655566666666666666432     


Q ss_pred             ccCCccCCeEeccCCcCc-cCCcccc
Q 014200          203 IGSLSRLIRLDLHQNRIL-SIPSSIS  227 (429)
Q Consensus       203 ~~~~~~L~~L~l~~~~~~-~~~~~~~  227 (429)
                       ..+++++.|++..|.++ .+|..++
T Consensus       162 -~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          162 -CTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             -CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             -cCCCCHHHHHHHHHhCCceeeccCc
Confidence             23345555555555544 3344333

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.68  E-value=8.5e-16  Score=133.98  Aligned_cols=149  Identities=21%  Similarity=0.306  Sum_probs=127.8

Q ss_pred             ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCC
Q 014200           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSN  124 (429)
Q Consensus        47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~  124 (429)
                      -+.++.++++++.+|..+.  ++|+.|++++|.+..+ +..|.++++|++|++++|.+..++.. +..+++|++|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            6789999999999987554  8999999999999977 55889999999999999999988754 688999999999999


Q ss_pred             CCCcCCcc-ccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCC
Q 014200          125 QLKELPSS-LGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN  197 (429)
Q Consensus       125 ~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  197 (429)
                      ++..++.. +..+++|++|++++|.++.+|..+..+++|+.|++++|.+..++...+..+++|+.+++.+|.+.
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            99988654 67889999999999999998888888999999999999888887766777777888888777664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.67  E-value=1.1e-18  Score=171.93  Aligned_cols=120  Identities=23%  Similarity=0.279  Sum_probs=79.2

Q ss_pred             CCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCC
Q 014200          138 NLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN  217 (429)
Q Consensus       138 ~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~  217 (429)
                      .|+.|++++|.++.+|. +..+++|+.|++++|.+..+|. .+..+++|+.|++++|.++.+| .+..+++|+.|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            35666666666666654 6666666666666666665554 3666666666666666666665 5666777777777777


Q ss_pred             cCccC--CccccccCCCcEEEcCCCCCCccChh----hcCCCCCCEEEC
Q 014200          218 RILSI--PSSISGCCSLAEFYMGNNALSALPAE----LGKLSKLGTLDL  260 (429)
Q Consensus       218 ~~~~~--~~~~~~~~~L~~L~l~~n~i~~~~~~----~~~~~~L~~L~l  260 (429)
                      .++.+  |..+..+++|+.|++++|.++..|+.    +..+|+|+.|++
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            77766  66777777777777777777755433    344677777753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=2.4e-16  Score=160.09  Aligned_cols=195  Identities=20%  Similarity=0.259  Sum_probs=119.1

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhh
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~   88 (429)
                      ..++.|++.++.+..++...+....-        .--++..+++..+.+...+..+..+++|+.|++++|.+..+|..+.
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~L--------s~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~  244 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKL--------SQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF  244 (727)
T ss_dssp             ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred             CccceEEeeCCCCCcchhhHhhcCcc--------CcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence            45778888888887766655443110        0012333444445555556678999999999999999999998888


Q ss_pred             CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEcc
Q 014200           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~  168 (429)
                      ++++|++|++++|.+..+|..+.++++|++|++++|.+..+|..+..+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus       245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~  324 (727)
T 4b8c_D          245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVE  324 (727)
T ss_dssp             GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECT
T ss_pred             CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccChhhhhccc-ccceeecCCccCCc-CCccccCCccCCeEeccCC
Q 014200          169 GNKLTVLSNNLIASWT-MLTELIASKNLLNG-MPETIGSLSRLIRLDLHQN  217 (429)
Q Consensus       169 ~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~  217 (429)
                      +|.+....+..+.... ....+++++|.++. +|      ..++.|+++.+
T Consensus       325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             CCccCCCChHHHhhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence            9999876665554432 22346777777753 23      24555666555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=2e-17  Score=163.08  Aligned_cols=179  Identities=21%  Similarity=0.209  Sum_probs=116.5

Q ss_pred             cCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCc-------------ccccChhhhhcccccceee-cCCccCCcC
Q 014200          134 GRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-------------LTVLSNNLIASWTMLTELI-ASKNLLNGM  199 (429)
Q Consensus       134 ~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~l~~~  199 (429)
                      ..++.|+.|++++|.++.+|..++.+++|+.|++++|.             .....+..+..+++|+.|+ ++.+.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45667777777777777777777777777777765442             2223334456666777766 444433211


Q ss_pred             Cc------ccc--CCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccch
Q 014200          200 PE------TIG--SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE  271 (429)
Q Consensus       200 ~~------~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  271 (429)
                      +.      .+.  ....|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|+.|++++|.+++++..
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l  504 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV  504 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCccc
Confidence            10      000  01247778888887777765 7777788888888887777777777778888888887777776633


Q ss_pred             hhccccCEEEccCCCCCCC--CccccCCCCCCEEEccCCCCCCc
Q 014200          272 ACQLRLSVLDLSNNSLSGL--PPEIGKMTTLRKLLLTGNPLRTL  313 (429)
Q Consensus       272 ~~~~~L~~l~l~~n~l~~l--~~~l~~~~~L~~L~l~~~~i~~~  313 (429)
                      ....+|+.|++++|.++++  |..+..+++|+.|++++|+++++
T Consensus       505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            3334577777777777775  66677777777777777766543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.64  E-value=4.6e-16  Score=143.58  Aligned_cols=99  Identities=17%  Similarity=0.245  Sum_probs=62.1

Q ss_pred             cCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCC-ccccCCccCC-eEeccCCcCccC-CccccccCCCcEE
Q 014200          159 CSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLI-RLDLHQNRILSI-PSSISGCCSLAEF  235 (429)
Q Consensus       159 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~-~L~l~~~~~~~~-~~~~~~~~~L~~L  235 (429)
                      +++|+.+++++|.+..++...|.++.+|+++++.++ ++.++ ..|..+++|+ .+.+.+ .+..+ +.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            566777777666666666666666666777766665 54443 3456666666 666666 44444 3566666666666


Q ss_pred             EcCCCCCCccCh-hhcCCCCCCEEE
Q 014200          236 YMGNNALSALPA-ELGKLSKLGTLD  259 (429)
Q Consensus       236 ~l~~n~i~~~~~-~~~~~~~L~~L~  259 (429)
                      +++.+.++.++. +|..+++|+.+.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            666666666533 566666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.63  E-value=7e-15  Score=139.15  Aligned_cols=322  Identities=13%  Similarity=0.181  Sum_probs=211.5

Q ss_pred             hHHHHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCC
Q 014200            2 DRILKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKL   80 (429)
Q Consensus         2 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i   80 (429)
                      +.||.+|++|+.+.+.. +++.|+..+|.+            |.+|+.+++..+ ++.++. .|.+|++|+.+.+..+ +
T Consensus        64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~------------c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l  128 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPS-TVREIGEFAFEN------------CSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-L  128 (394)
T ss_dssp             TTTTTTCTTEEEEECCT-TCCEECTTTTTT------------CTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred             HHHhhCCCCceEEEeCC-CccCcchhHhhC------------CCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-e
Confidence            35788899999999974 478888888775            788999999754 777765 6899999998877654 4


Q ss_pred             CCcc-hhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccC-Cccc
Q 014200           81 SELP-AAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSL-PEDL  156 (429)
Q Consensus        81 ~~~~-~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~-~~~l  156 (429)
                      ..+. .+|.++..+.......  +..+ ...|.++.+|+.+.+..+ +..++ ..+..+++|+.+.+..+ ++.+ ...+
T Consensus       129 ~~i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F  204 (394)
T 4fs7_A          129 KSIGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCF  204 (394)
T ss_dssp             CEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTT
T ss_pred             eeecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhh
Confidence            4443 3666665444333222  2222 245778888888888754 34443 45677788888887665 3333 3456


Q ss_pred             cccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEE
Q 014200          157 ADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY  236 (429)
Q Consensus       157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~  236 (429)
                      ..+..|+.+.+..+. ..+... ......++.+.+....-..-...+..+..++.+.+..+...-...++..+..++.+.
T Consensus       205 ~~~~~L~~i~~~~~~-~~i~~~-~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          205 AECILLENMEFPNSL-YYLGDF-ALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             TTCTTCCBCCCCTTC-CEECTT-TTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEE
T ss_pred             ccccccceeecCCCc-eEeehh-hcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceec
Confidence            777788877765442 222222 334456777776543221112345677788888887665544456677888888777


Q ss_pred             cCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCc
Q 014200          237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTL  313 (429)
Q Consensus       237 l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~  313 (429)
                      .....+.  ...+..+.+|+.+.+..+ ++.+...++.  .+|+.+++..+ ++.+ ..+|.+|.+|+.+.+..+ ++.+
T Consensus       283 ~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I  357 (394)
T 4fs7_A          283 YGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKI  357 (394)
T ss_dssp             ECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEE
T ss_pred             cCceeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEe
Confidence            6554322  235677888888888654 5555555543  34888888643 6665 456889999999999776 7888


Q ss_pred             cccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEE
Q 014200          314 RSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL  385 (429)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L  385 (429)
                      +...|.+.                                   .+|+.+++..+ +..+..++.+|++|+.+
T Consensus       358 ~~~aF~~C-----------------------------------~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          358 GANAFQGC-----------------------------------INLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CTTTBTTC-----------------------------------TTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             hHHHhhCC-----------------------------------CCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            87777763                                   47888888643 44455567788888764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.1e-15  Score=127.66  Aligned_cols=133  Identities=20%  Similarity=0.258  Sum_probs=100.9

Q ss_pred             CEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCC
Q 014200          256 GTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE  335 (429)
Q Consensus       256 ~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  335 (429)
                      +.++++++.++.++.. .+.++++|++++|.++.+|..+.++++|+.|++++|.+++++...|.+               
T Consensus        13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~---------------   76 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN---------------   76 (193)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT---------------
T ss_pred             CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC---------------
Confidence            4566666666665543 234577888888888878777888888888888888887776554443               


Q ss_pred             CCcccccCChhhHHhhhhccccccccccccCCccccCCh-hhhccCCCcEEeCCCCccccCCh-hhcccccceeeccccC
Q 014200          336 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLV  413 (429)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~  413 (429)
                                          .++|++|++++|.|+.++. .+..+++|++|+|++|+|+.+|. .+..+++|++|+  ++
T Consensus        77 --------------------l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~  134 (193)
T 2wfh_A           77 --------------------MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA--IG  134 (193)
T ss_dssp             --------------------CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE--CC
T ss_pred             --------------------CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE--eC
Confidence                                2477888888888887664 56688999999999999998665 577889999999  99


Q ss_pred             CCccccccccccccc
Q 014200          414 TNKESCISGCYLYWN  428 (429)
Q Consensus       414 ~n~i~~i~~~~~~~~  428 (429)
                      +|++.|  +|-+.|.
T Consensus       135 ~N~~~C--~c~l~~l  147 (193)
T 2wfh_A          135 ANPLYC--DCNMQWL  147 (193)
T ss_dssp             SSCEEC--SGGGHHH
T ss_pred             CCCeec--CCcCHHH
Confidence            999988  6777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=2.2e-15  Score=127.57  Aligned_cols=60  Identities=23%  Similarity=0.311  Sum_probs=34.8

Q ss_pred             ccccccccCCccccCCh-hhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc
Q 014200          358 TSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       358 ~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      +|+.|++++|+++.++. .+..+++|++|++++|++++ .|..+..+++|++|+  +++|++++
T Consensus        79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~N~l~c  140 (192)
T 1w8a_A           79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN--LASNPFNC  140 (192)
T ss_dssp             TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE--CTTCCBCC
T ss_pred             cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE--eCCCCccC
Confidence            44555555555553332 24456666666666666666 455566666666666  66666665

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.3e-15  Score=126.14  Aligned_cols=131  Identities=18%  Similarity=0.199  Sum_probs=57.0

Q ss_pred             CCCEEECCCCCCC--CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCc-CCccccCCCCCCEEEcC
Q 014200           69 LLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDFKAS  145 (429)
Q Consensus        69 ~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~  145 (429)
                      +|+.|++++|.++  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|+++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            3444444444433  3333334444444444444444333 333344444444444444443 33333334444444444


Q ss_pred             CCccccCC--ccccccCCCcEEEccCCcccccCh---hhhhcccccceeecCCccCCcCC
Q 014200          146 NNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIASKNLLNGMP  200 (429)
Q Consensus       146 ~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~  200 (429)
                      +|.++.++  ..+..+++|+.|++++|.+...+.   ..+..+++|+++++++|...++|
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            44444332  334444455555555554444443   23444555555555555544443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.61  E-value=8.1e-14  Score=131.42  Aligned_cols=207  Identities=15%  Similarity=0.245  Sum_probs=92.6

Q ss_pred             CCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCC-ccccCCCCcCEEec
Q 014200           45 VDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDC  121 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~l  121 (429)
                      ..++.+.+. +.++.|+. +|.++ +|+.+.+..+ ++.++. +|.++ +|+.+.+.. .+..++ ..|.+|++|+.+++
T Consensus       113 ~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence            344444443 23444433 34443 4555555443 444433 44443 455555543 333332 23455555555555


Q ss_pred             CCCCCCcCCccccCCCCCCEEEcCCCccccCC-ccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcC-
Q 014200          122 SSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-  199 (429)
Q Consensus       122 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-  199 (429)
                      +.+++..++.....+.+|+.+.+..+ ++.++ ..|..+++|+.+++..+ +..++..+|.+ .+|+.+.+.. .++.+ 
T Consensus       188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~  263 (401)
T 4fdw_A          188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIA  263 (401)
T ss_dssp             TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEEC
T ss_pred             CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEC
Confidence            55555555444434455555555432 33222 23445555555555432 44444444444 3455554422 23222 


Q ss_pred             CccccCCccCCeEeccCCcCc-----cC-CccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECC
Q 014200          200 PETIGSLSRLIRLDLHQNRIL-----SI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLH  261 (429)
Q Consensus       200 ~~~~~~~~~L~~L~l~~~~~~-----~~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~  261 (429)
                      ...+..+++|+.+.+.++.+.     .+ +.+|.+|++|+.+.+.+ .++.+ ..+|..|.+|+.+.+.
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence            233444455555555444332     12 23445555555555542 24333 2234445555555553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=2.2e-14  Score=135.27  Aligned_cols=255  Identities=14%  Similarity=0.259  Sum_probs=178.0

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-h
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-A   86 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~   86 (429)
                      ..++.+.+.. +++.|+..+|.+            + +|+.+.+..+ ++.++. +|.++ +|+.+.+.+ .++.++. +
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~------------~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~a  175 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRN------------S-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDI  175 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTT------------C-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSST
T ss_pred             CCccEEEECC-ccCEehHhhccc------------C-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHH
Confidence            3445555543 456676666664            4 5888888654 776665 57764 688888875 5666654 7


Q ss_pred             hhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCc-cccccCCCcE
Q 014200           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSK  164 (429)
Q Consensus        87 l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~  164 (429)
                      |.+|++|+.+++..|.+..++.....+.+|+.+.+..+ +..++ ..+..|++|+.+.+..+ ++.++. .|.. .+|+.
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT  252 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred             hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence            88888888888888888877766555788888888744 66664 35778888888888764 444433 3444 68888


Q ss_pred             EEccCCcccccChhhhhcccccceeecCCccCC-----cC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEc
Q 014200          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-----GM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYM  237 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l  237 (429)
                      +.+. +.+..++...|.+|++|+.+.+.++...     .+ +..+..+++|+.+.+.. .+..+ ..+|.+|.+|+.+.+
T Consensus       253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          253 VKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             EEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred             EEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence            8884 4577777777888888888888777654     23 45677888888888884 45555 467888888998888


Q ss_pred             CCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhhc---cccCEEEccCCCC
Q 014200          238 GNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ---LRLSVLDLSNNSL  287 (429)
Q Consensus       238 ~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~~L~~l~l~~n~l  287 (429)
                      ..+ ++.+ ..+|..+ +|+.+++.+|....+....+.   ..++.+++..+.+
T Consensus       331 p~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          331 PAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             Ccc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            654 6655 4567888 899999988877665544332   3467777765543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3e-15  Score=123.92  Aligned_cols=132  Identities=19%  Similarity=0.210  Sum_probs=96.3

Q ss_pred             cCCccEEEcCCCCCC--ccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCcc-CCccccCCCCcCEEe
Q 014200           44 AVDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFD  120 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~~~~L~~L~  120 (429)
                      .+++++|++++|.++  .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            356777777777777  6776677777777788777777766 666777777778877777776 555566677777787


Q ss_pred             cCCCCCCcCC--ccccCCCCCCEEEcCCCccccCCc----cccccCCCcEEEccCCcccccC
Q 014200          121 CSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVEGNKLTVLS  176 (429)
Q Consensus       121 l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~~~~  176 (429)
                      +++|.+..++  ..+..+++|++|++++|.++.++.    .+..+++|+.|++++|.+..++
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            7777777665  566777777777777777776665    5677777777777777665544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.59  E-value=1.9e-15  Score=153.60  Aligned_cols=120  Identities=30%  Similarity=0.396  Sum_probs=95.2

Q ss_pred             CccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchh
Q 014200          193 KNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA  272 (429)
Q Consensus       193 ~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  272 (429)
                      .+.+...+..+..++.|+.|++++|.+..++..+..+++|++|+|++|.++.+|..+..+++|+.|++++|.++.++...
T Consensus       210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~  289 (727)
T 4b8c_D          210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAEL  289 (727)
T ss_dssp             ------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred             ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhh
Confidence            34444446667788889999999999888887777889999999999999988888999999999999999998876654


Q ss_pred             hc-cccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCC
Q 014200          273 CQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRT  312 (429)
Q Consensus       273 ~~-~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~  312 (429)
                      .. .+|++|+|++|.++.+|..+.++++|+.|++++|.++.
T Consensus       290 ~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          290 GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            44 34999999999999999999999999999999999854

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=4.6e-15  Score=120.17  Aligned_cols=123  Identities=23%  Similarity=0.287  Sum_probs=71.4

Q ss_pred             CCccEEEcCCCCCC--ccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCcc-CCccccCCCCcCEEec
Q 014200           45 VDLQKLILAHNNIE--KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK-IPDEIGSATALVKFDC  121 (429)
Q Consensus        45 ~~L~~L~l~~~~i~--~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~~~~L~~L~l  121 (429)
                      +++++|++++|.++  .+|..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            45666666666665  5555556666666666666666655 555566666666666666654 4444555666666666


Q ss_pred             CCCCCCcCC--ccccCCCCCCEEEcCCCccccCCc----cccccCCCcEEEcc
Q 014200          122 SSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLDVE  168 (429)
Q Consensus       122 ~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~l~  168 (429)
                      ++|.+..++  ..+..+++|++|++++|.++.++.    .+..+++|+.|+++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666655443  445555555555555555554443    34455555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=4.6e-15  Score=123.76  Aligned_cols=134  Identities=22%  Similarity=0.234  Sum_probs=92.7

Q ss_pred             CcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccc-cCCCCcC
Q 014200           39 DKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEI-GSATALV  117 (429)
Q Consensus        39 ~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~-~~~~~L~  117 (429)
                      ..+..+.++++|++++|.++.++......++|+.|++++|.++.+ +.+..+++|++|++++|.+..+|+.+ ..+++|+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            345556777888888777777654333334778888888777766 56677777777777777777766543 6777777


Q ss_pred             EEecCCCCCCcCCc--cccCCCCCCEEEcCCCccccCCcc----ccccCCCcEEEccCCccc
Q 014200          118 KFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPED----LADCSKMSKLDVEGNKLT  173 (429)
Q Consensus       118 ~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~  173 (429)
                      +|++++|.+..+|.  .+..+++|++|++++|.+..++..    +..+++|+.+++++|...
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            77777777776665  566777777777777777766653    666677777777666543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=2.1e-14  Score=121.48  Aligned_cols=123  Identities=22%  Similarity=0.326  Sum_probs=57.2

Q ss_pred             EEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCC
Q 014200           49 KLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLK  127 (429)
Q Consensus        49 ~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~  127 (429)
                      +++++++.++.+|..+.  +++++|++++|.++.+|..+.++++|++|++++|.++.++. .+.++++|++|++++|++.
T Consensus        14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence            34444444444443221  34444444444444444444444444444444444444432 2444444445555444444


Q ss_pred             cCCc-cccCCCCCCEEEcCCCccccCCc-cccccCCCcEEEccCCccc
Q 014200          128 ELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDVEGNKLT  173 (429)
Q Consensus       128 ~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~  173 (429)
                      .++. .+..+++|++|++++|.++.++. .+..+++|+.+++++|.+.
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            4432 34444555555555555554433 2444555555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.2e-14  Score=134.10  Aligned_cols=254  Identities=15%  Similarity=0.140  Sum_probs=157.5

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhC--------CCCCcEeecCCCcCccCCc-cccCC
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGE--------LHMLKSLDVSFNSIMKIPD-EIGSA  113 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~--------l~~L~~L~l~~~~i~~l~~-~~~~~  113 (429)
                      +++|++|+|++|.+......-..++.++.+.+..+   .+|+ +|.+        +++|+.+++.+ .++.+++ .|.+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~  123 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC  123 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC
T ss_pred             hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC
Confidence            45677777777766622111112222333444433   3433 6777        89999999888 7777754 47888


Q ss_pred             CCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCcc----ccC-CccccccCCCc-EEEccCCcccccChhhhhc---c
Q 014200          114 TALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCI----TSL-PEDLADCSKMS-KLDVEGNKLTVLSNNLIAS---W  183 (429)
Q Consensus       114 ~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~----~~~-~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~---~  183 (429)
                      ++|++++++.+.+..++. .+..+.++..+.......    ..+ ...|..+..|+ .+.+...  ..++...+..   .
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~--~~l~~~~~~~~~~~  201 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM--GKLEDEIMKAGLQP  201 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT--CCHHHHHHHTTCCG
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC--CcHHHHHhhcccCc
Confidence            999999998888876654 566666666665544221    111 22355666676 4544322  1222221211   3


Q ss_pred             cccceeecCCccCCcCCccc-cCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCCCCccC-hhhcCCCCCC-EEE
Q 014200          184 TMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALP-AELGKLSKLG-TLD  259 (429)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~-~L~  259 (429)
                      .++..+.+.+.-...-...+ ..+++|+.+++++|.+..++ .+|.+|++|+++++.+| ++.++ .+|..+++|+ .++
T Consensus       202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~  280 (329)
T 3sb4_A          202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE  280 (329)
T ss_dssp             GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence            34444544443211101111 23678888888888888775 56888888888888887 77664 4688888898 888


Q ss_pred             CCCCcCccccchhhcc--ccCEEEccCCCCCCCCc-cccCCCCCCEEEc
Q 014200          260 LHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPP-EIGKMTTLRKLLL  305 (429)
Q Consensus       260 l~~n~l~~~~~~~~~~--~L~~l~l~~n~l~~l~~-~l~~~~~L~~L~l  305 (429)
                      +.+ .++.+....+..  +|+.+++.+|.++.++. +|.+|++|+.++.
T Consensus       281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             Ecc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            888 777776665543  48889988888888754 6889999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.55  E-value=3e-14  Score=120.56  Aligned_cols=124  Identities=18%  Similarity=0.326  Sum_probs=63.2

Q ss_pred             cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch--hhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCCC
Q 014200           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA--AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSN  124 (429)
Q Consensus        48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~--~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~~  124 (429)
                      +++++++++++.+|..+..  ++++|++++|.++.++.  .+..+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            4445555555544443321  45555555555544432  245555555555555555544 334555555555555555


Q ss_pred             CCCcCCc-cccCCCCCCEEEcCCCccccC-CccccccCCCcEEEccCCccc
Q 014200          125 QLKELPS-SLGRCLNLSDFKASNNCITSL-PEDLADCSKMSKLDVEGNKLT  173 (429)
Q Consensus       125 ~l~~~~~-~~~~~~~L~~L~l~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~  173 (429)
                      ++..++. .+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            5554432 244555555555555555532 444555666666666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=1.3e-14  Score=117.47  Aligned_cols=126  Identities=22%  Similarity=0.264  Sum_probs=93.1

Q ss_pred             CCCCCCEEECCCCCCC--CcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCc-CCccccCCCCCCEE
Q 014200           66 NLPLLTVLNVSHNKLS--ELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKE-LPSSLGRCLNLSDF  142 (429)
Q Consensus        66 ~~~~L~~L~l~~~~i~--~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L  142 (429)
                      ..++++.|++++|.++  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3467888888888877  6777777888888888888887776 667778888888888888776 66656667788888


Q ss_pred             EcCCCccccCC--ccccccCCCcEEEccCCcccccCh---hhhhcccccceeecC
Q 014200          143 KASNNCITSLP--EDLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELIAS  192 (429)
Q Consensus       143 ~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  192 (429)
                      ++++|.++.++  ..+..+++|+.|++++|.++..+.   ..+..+++|+.++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888777653  567777777788877777776655   446666666666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.55  E-value=3.3e-13  Score=127.59  Aligned_cols=315  Identities=11%  Similarity=0.195  Sum_probs=174.2

Q ss_pred             CccCChhhhhhhccccCCCcccccC-CccEEEcCCCCCCccch-hccCCCCCCEEECCCCC---CCCcch-hhhCCCCCc
Q 014200           21 LRDVPNEVYKNFDEAGEGDKWWEAV-DLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNK---LSELPA-AIGELHMLK   94 (429)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~---i~~~~~-~l~~l~~L~   94 (429)
                      +++|++.+|..            |+ .|+.+.+.. .++.|.+ +|.+|.+|+.+.+..+.   ++.++. +|.++.+|+
T Consensus        51 Vt~Ig~~aF~~------------~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~  117 (394)
T 4gt6_A           51 VSKIGDRVFCN------------YKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELT  117 (394)
T ss_dssp             EEEECTTTTTT------------CCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCC
T ss_pred             eeEcCHhhccC------------CCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccce
Confidence            44566666654            53 488888864 4676755 68888888888887653   555644 788888888


Q ss_pred             EeecCCCcCccCC-ccccCCCCcCEEecCCCCCCcCC-ccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcc
Q 014200           95 SLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKELP-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKL  172 (429)
Q Consensus        95 ~L~l~~~~i~~l~-~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~  172 (429)
                      .+.+..+ +..++ ..+.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..+.........|+.+.+..+ .
T Consensus       118 ~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~  193 (394)
T 4gt6_A          118 DIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-V  193 (394)
T ss_dssp             BCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-C
T ss_pred             eeccCCc-cceehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCc-c
Confidence            8877654 44443 34677888888888654 34443 45677888888888654 3333333233467888887544 4


Q ss_pred             cccChhhhhcccccceeecCCccCCcCCccc--------------cCCccCCeEeccCCcCccCCccccccCCCcEEEcC
Q 014200          173 TVLSNNLIASWTMLTELIASKNLLNGMPETI--------------GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG  238 (429)
Q Consensus       173 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  238 (429)
                      ..+....+..+..+................+              .....+..+.+...-..-...+|..|..|+.+.+.
T Consensus       194 ~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp  273 (394)
T 4gt6_A          194 TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMP  273 (394)
T ss_dssp             CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECC
T ss_pred             cccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecc
Confidence            4455555677777766665544332221111              01112222222211111112345555555555554


Q ss_pred             CCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccc
Q 014200          239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSL  317 (429)
Q Consensus       239 ~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~  317 (429)
                      .+..+--..++..+++|+.+.+..                       .++.+ ..+|.+|.+|+.+.+.++ ++.++...
T Consensus       274 ~~~~~I~~~aF~~c~~L~~i~l~~-----------------------~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a  329 (394)
T 4gt6_A          274 DSVVSIGTGAFMNCPALQDIEFSS-----------------------RITELPESVFAGCISLKSIDIPEG-ITQILDDA  329 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCT-----------------------TCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred             cccceecCcccccccccccccCCC-----------------------cccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence            332211123345555555555431                       23333 234667777777777653 66666665


Q ss_pred             cCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCCh-hhhccCCCcEEeCCCCccccCC
Q 014200          318 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELP  396 (429)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~  396 (429)
                      |.+.                                   .+|+.+.+..+ ++.+.+ ++.+|.+|+.+++.++....  
T Consensus       330 F~~C-----------------------------------~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--  371 (394)
T 4gt6_A          330 FAGC-----------------------------------EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--  371 (394)
T ss_dssp             TTTC-----------------------------------TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--
T ss_pred             hhCC-----------------------------------CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--
Confidence            5552                                   46677777543 555544 44478888888888764322  


Q ss_pred             hhhcccccceeeccccCCCc
Q 014200          397 PELSSCASLQVKFSDLVTNK  416 (429)
Q Consensus       397 ~~l~~l~~L~~L~~~l~~n~  416 (429)
                      ..+..+..|+.+.  +..+.
T Consensus       372 ~~~~~~~~L~~i~--i~~~~  389 (394)
T 4gt6_A          372 NAISTDSGLQNLP--VAPGS  389 (394)
T ss_dssp             HTCBCCCCC-----------
T ss_pred             hhhhccCCCCEEE--eCCCC
Confidence            3456677777777  66554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=4.6e-14  Score=117.66  Aligned_cols=133  Identities=20%  Similarity=0.175  Sum_probs=101.5

Q ss_pred             hccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccc-cCCCCCCE
Q 014200           63 DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL-GRCLNLSD  141 (429)
Q Consensus        63 ~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~  141 (429)
                      .+..+++|+.|++++|.++.++......++|++|++++|.+..+ +.+..+++|++|++++|.+..+|..+ ..+++|++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            36678889999999998888765444445899999999988877 56788888999999888888776544 77888888


Q ss_pred             EEcCCCccccCCc--cccccCCCcEEEccCCcccccChh---hhhcccccceeecCCccC
Q 014200          142 FKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNN---LIASWTMLTELIASKNLL  196 (429)
Q Consensus       142 L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l  196 (429)
                      |++++|.++.++.  .+..+++|+.|++++|.+..++..   .+..+++|+.+++++|..
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            8888888877765  677788888888888877766543   356666677777666654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.49  E-value=3.7e-12  Score=120.37  Aligned_cols=307  Identities=11%  Similarity=0.197  Sum_probs=193.1

Q ss_pred             CCccch-hccCCC-CCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCc---CccCC-ccccCCCCcCEEecCCCCCCcC
Q 014200           57 IEKLKE-DLRNLP-LLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNS---IMKIP-DEIGSATALVKFDCSSNQLKEL  129 (429)
Q Consensus        57 i~~l~~-~~~~~~-~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~---i~~l~-~~~~~~~~L~~L~l~~~~l~~~  129 (429)
                      ++.|.+ +|.+++ .|+.+.+..+ ++.+.+ +|.+|.+|+.+.+..+.   ++.+. .+|.++.+|+.+.+..+ +..+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            445654 688885 5999999754 777755 89999999999997653   55564 34788999999888654 5555


Q ss_pred             C-ccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCcc
Q 014200          130 P-SSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSR  208 (429)
Q Consensus       130 ~-~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  208 (429)
                      + ..+..+.+|+.+.+..+...--...+..+..|+.+.+..+ +..++..++.. ..|+.+.+..+....-...+..+..
T Consensus       129 ~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~  206 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFA  206 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTT
T ss_pred             hhhhhhhhcccccccccceeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccc
Confidence            4 4678899999999976533323346788999999999654 66677665654 5788888866543333345667777


Q ss_pred             CCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCC
Q 014200          209 LIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNS  286 (429)
Q Consensus       209 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~  286 (429)
                      ++...........+...+..........+.         .+.....+..+.+.. .+..+....+.  ..|+.+.+..+.
T Consensus       207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~  276 (394)
T 4gt6_A          207 LSTITSDSESYPAIDNVLYEKSANGDYALI---------RYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV  276 (394)
T ss_dssp             CCEEEECCSSSCBSSSCEEEECTTSCEEEE---------ECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC
T ss_pred             cceecccccccccccceeeccccccccccc---------ccccccccceEEcCC-cceEcccceeeecccccEEeccccc
Confidence            777776655444333222111111100000         000111122222211 11111111111  124444443321


Q ss_pred             CCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccC
Q 014200          287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG  366 (429)
Q Consensus       287 l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~  366 (429)
                      .+--...+.+|++|+.+.+. +.++.++...|.+.                                   .+|+.+++..
T Consensus       277 ~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c-----------------------------------~~L~~i~lp~  320 (394)
T 4gt6_A          277 VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGC-----------------------------------ISLKSIDIPE  320 (394)
T ss_dssp             CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTC-----------------------------------TTCCEEECCT
T ss_pred             ceecCcccccccccccccCC-CcccccCceeecCC-----------------------------------CCcCEEEeCC
Confidence            11123467889999999996 56778887777663                                   5889999976


Q ss_pred             CccccCCh-hhhccCCCcEEeCCCCccccCC-hhhcccccceeeccccCCCcc
Q 014200          367 MNLSAIPS-EIWEAGEITKLDLSRNSIQELP-PELSSCASLQVKFSDLVTNKE  417 (429)
Q Consensus       367 ~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~-~~l~~l~~L~~L~~~l~~n~i  417 (429)
                      + ++.+.+ ++..|.+|+++.|..+ ++.+. .++.+|++|++++  +.++..
T Consensus       321 ~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~--~~~~~~  369 (394)
T 4gt6_A          321 G-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE--YSGSRS  369 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE--ESSCHH
T ss_pred             c-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE--ECCcee
Confidence            4 666644 5568999999999755 77754 5788999999999  988754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=4.5e-13  Score=111.72  Aligned_cols=124  Identities=22%  Similarity=0.358  Sum_probs=58.5

Q ss_pred             cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCC
Q 014200           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQ  125 (429)
Q Consensus        48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~  125 (429)
                      +.+++++++++.+|..+  .++|+.|++++|.++.++. .+..+++|++|++++|.+..++.. +..+++|++|++++|.
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            34444444444444322  1344444444444444432 334445555555555544444332 3444555555555555


Q ss_pred             CCcCCcc-ccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCccc
Q 014200          126 LKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLT  173 (429)
Q Consensus       126 l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~  173 (429)
                      ++.++.. +..+++|++|++++|.++.++.. +..+++|+.+++++|.+.
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            5444332 34445555555555555544433 344556666666666544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=4.2e-13  Score=111.88  Aligned_cols=60  Identities=25%  Similarity=0.367  Sum_probs=31.9

Q ss_pred             ccccccccCCccccCChh-hhccCCCcEEeCCCCccccCChh-hcccccceeeccccCCCcccc
Q 014200          358 TSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       358 ~L~~l~l~~~~i~~~~~~-~~~~~~L~~L~ls~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      +|+.|++++|.++.++.. +..+++|++|++++|+++++|.. +..+++|++|+  +++|++++
T Consensus        77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~--l~~N~~~~  138 (177)
T 2o6r_A           77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW--LHTNPWDC  138 (177)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE--CCSSCBCC
T ss_pred             ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE--ecCCCeec
Confidence            445555555555544433 33455566666666655554433 34555566666  66665555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=6.4e-15  Score=125.40  Aligned_cols=117  Identities=30%  Similarity=0.341  Sum_probs=75.6

Q ss_pred             CCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccC
Q 014200           56 NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGR  135 (429)
Q Consensus        56 ~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  135 (429)
                      .++.+|..+..+++|++|++++|.++.+| .+.++++|++|++++|.+..+|..+..+++|++|++++|++..+| .+..
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            34455556666777777777777766666 666677777777777766666665555666777777766666654 4555


Q ss_pred             CCCCCEEEcCCCccccCCc--cccccCCCcEEEccCCcccc
Q 014200          136 CLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTV  174 (429)
Q Consensus       136 ~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~  174 (429)
                      +++|++|++++|.++.++.  .+..+++|+.+++++|.+..
T Consensus       114 l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            6666777776666665432  45666667777776666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=3.9e-15  Score=126.71  Aligned_cols=148  Identities=20%  Similarity=0.256  Sum_probs=119.9

Q ss_pred             HHHhhhcCeeeccCCCCc-cCCh-----hhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCC
Q 014200            5 LKAARTSGSLNLSNRSLR-DVPN-----EVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHN   78 (429)
Q Consensus         5 ~~~~~~l~~L~l~~~~l~-~~~~-----~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~   78 (429)
                      +.....++.++++++.+. .+|.     ..+.            .+++|++|++++|.++.+| .+..+++|+.|++++|
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~------------~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLS------------TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN   80 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHH------------HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHh------------cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC
Confidence            455566777777776664 2222     1233            3788999999999999988 8899999999999999


Q ss_pred             CCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc--cccCCCCCCEEEcCCCccccCC-c-
Q 014200           79 KLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLP-E-  154 (429)
Q Consensus        79 ~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~-  154 (429)
                      .++.+|..+..+++|++|++++|.+..+| .+..+++|++|++++|.+..++.  .+..+++|++|++++|.+...+ . 
T Consensus        81 ~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~  159 (198)
T 1ds9_A           81 LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred             CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence            99999988888999999999999999876 58889999999999999997654  6889999999999999886432 1 


Q ss_pred             ---------cccccCCCcEEE
Q 014200          155 ---------DLADCSKMSKLD  166 (429)
Q Consensus       155 ---------~l~~~~~L~~L~  166 (429)
                               .+..+++|+.|+
T Consensus       160 ~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          160 NATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCSEEC
T ss_pred             cchHHHHHHHHHhCCCcEEEC
Confidence                     256677787776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=2.2e-12  Score=106.98  Aligned_cols=62  Identities=26%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             ccccccccCCccccCChhh-hccCCCcEEeCCCCccccCChh-hcccccceeeccccCCCcccccc
Q 014200          358 TSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPE-LSSCASLQVKFSDLVTNKESCIS  421 (429)
Q Consensus       358 ~L~~l~l~~~~i~~~~~~~-~~~~~L~~L~ls~n~i~~~~~~-l~~l~~L~~L~~~l~~n~i~~i~  421 (429)
                      +|+.|++++|+|+.+|... ..+++|++|+|++|+|+++|.. +..+++|++|+  +++|++.+.|
T Consensus        58 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~--L~~N~~~c~~  121 (174)
T 2r9u_A           58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY--LYNNPWDCEC  121 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE--CCSSCBCTTB
T ss_pred             CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE--eCCCCccccc
Confidence            4444444444444444433 3555566666666666554443 55556666666  6666665544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.37  E-value=2.7e-12  Score=106.14  Aligned_cols=61  Identities=23%  Similarity=0.443  Sum_probs=34.8

Q ss_pred             ccccccccCCccccCChhh-hccCCCcEEeCCCCccccCCh-hhcccccceeeccccCCCccccc
Q 014200          358 TSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLVTNKESCI  420 (429)
Q Consensus       358 ~L~~l~l~~~~i~~~~~~~-~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~~n~i~~i  420 (429)
                      +|+.|++++|+|+.++... ..+++|++|+|++|+|+++|. .+..+++|++|+  +++|++++.
T Consensus        55 ~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~--L~~N~~~c~  117 (170)
T 3g39_A           55 QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW--LLNNPWDCA  117 (170)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE--CCSSCBCTT
T ss_pred             cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE--eCCCCCCCC
Confidence            4455555555555554433 356666666666666666443 355666666666  666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=5.6e-12  Score=104.55  Aligned_cols=104  Identities=19%  Similarity=0.251  Sum_probs=68.7

Q ss_pred             cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCCC
Q 014200           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSNQ  125 (429)
Q Consensus        48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~~  125 (429)
                      +.+++++++++.+|..+.  ++|++|++++|.++.+ |..|.++++|++|++++|.+..+|.. +.++++|++|++++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            566666666666665443  5677777777776655 34666777777777777777666554 4667777777777777


Q ss_pred             CCcCCcc-ccCCCCCCEEEcCCCccccCC
Q 014200          126 LKELPSS-LGRCLNLSDFKASNNCITSLP  153 (429)
Q Consensus       126 l~~~~~~-~~~~~~L~~L~l~~~~~~~~~  153 (429)
                      +..++.. +..+++|++|++++|.+...+
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            7766553 666677777777777666443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=5e-12  Score=104.47  Aligned_cols=102  Identities=21%  Similarity=0.309  Sum_probs=56.4

Q ss_pred             ccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCc-chhhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEEecCCC
Q 014200           47 LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKFDCSSN  124 (429)
Q Consensus        47 L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L~l~~~  124 (429)
                      .++++++++.++.+|..+.  ++|+.|++++|.++.+ |..|.++++|++|++++|.+..++.. +.++++|++|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3455555555555554332  4555555555555554 33455556666666666555555443 355566666666666


Q ss_pred             CCCcCCc-cccCCCCCCEEEcCCCccc
Q 014200          125 QLKELPS-SLGRCLNLSDFKASNNCIT  150 (429)
Q Consensus       125 ~l~~~~~-~~~~~~~L~~L~l~~~~~~  150 (429)
                      ++..++. .+..+++|++|++++|.+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            6555544 3555566666666666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.29  E-value=3.6e-10  Score=106.13  Aligned_cols=138  Identities=12%  Similarity=0.166  Sum_probs=87.1

Q ss_pred             hhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCccC-hhhcCCCCCCE
Q 014200          180 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGT  257 (429)
Q Consensus       180 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~-~~~~~~~~L~~  257 (429)
                      +..+..++.+.+..+--..-...+..+..|+.+.+..+ ++.+ ..++..+.+++.+.+..+ ++.++ .+|..|.+|+.
T Consensus       213 f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          213 FSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             cccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            44455566655544321112234556677777777654 3333 356777777887777543 44443 45777888888


Q ss_pred             EECCCCcCccccchhhcc--ccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCC
Q 014200          258 LDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP  321 (429)
Q Consensus       258 L~l~~n~l~~~~~~~~~~--~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  321 (429)
                      +.+.++.++.+....+..  +|+.+++..+ ++.+ ..+|.+|++|+.+.+..+ ++.++...|.+.
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence            888777777666655543  4888887543 5555 345788888888888654 777777777764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=1.6e-12  Score=121.27  Aligned_cols=158  Identities=23%  Similarity=0.247  Sum_probs=102.0

Q ss_pred             CccCCeEeccCCcCccC-----Ccccc-ccCCCcEEEcCCCCCCc--cChhhcCCCCCCEEECCCCcCccccchhh----
Q 014200          206 LSRLIRLDLHQNRILSI-----PSSIS-GCCSLAEFYMGNNALSA--LPAELGKLSKLGTLDLHSNQLKEYCVEAC----  273 (429)
Q Consensus       206 ~~~L~~L~l~~~~~~~~-----~~~~~-~~~~L~~L~l~~n~i~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----  273 (429)
                      .+.++.|++++|.++..     ...+. .+++|++|++++|.++.  +......+++|+.|++++|.++.......    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            35688899998888732     12222 33688889998888873  22223345578888888888874332221    


Q ss_pred             ---ccccCEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCCh
Q 014200          274 ---QLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK  345 (429)
Q Consensus       274 ---~~~L~~l~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (429)
                         ..+|++|++++|.+++     +...+..+++|+.|++++|.+++.+.           .                  
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~-----------~------------------  201 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL-----------E------------------  201 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH-----------H------------------
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH-----------H------------------
Confidence               2458888888888765     34455777888888888887743210           0                  


Q ss_pred             hhHHhhhhccccccccccccCCccc-----cCChhhhccCCCcEEeCCCCcccc
Q 014200          346 EDLITMATRLSVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE  394 (429)
Q Consensus       346 ~~~~~~~~~~~~~L~~l~l~~~~i~-----~~~~~~~~~~~L~~L~ls~n~i~~  394 (429)
                        .+......+++|+.|++++|.|+     .+...+..+++|++|||++|.|++
T Consensus       202 --~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          202 --LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             --HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             --HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence              01112223457888888888877     344555567888888888888775

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.25  E-value=1.2e-09  Score=102.53  Aligned_cols=259  Identities=12%  Similarity=0.129  Sum_probs=126.7

Q ss_pred             ccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEe
Q 014200           43 EAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFD  120 (429)
Q Consensus        43 ~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~  120 (429)
                      ...+|+.+.+. ..++.|++ +|.+|.+|+.+.+..+ ++.++. +|.++ +|+.+.+..+ +..+++......+|+.+.
T Consensus        44 ~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~~i~  119 (379)
T 4h09_A           44 DRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLDDFE  119 (379)
T ss_dssp             GGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCSEEE
T ss_pred             cccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccCCccccc
Confidence            35678888886 35777765 5888888888888644 666654 77776 6777776543 555544433334788888


Q ss_pred             cCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCC
Q 014200          121 CSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP  200 (429)
Q Consensus       121 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  200 (429)
                      +..+ +..+........+++.+.+..+--..-...+..+..++.+.+............. ....          .....
T Consensus       120 lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~~~----------~~~~~  187 (379)
T 4h09_A          120 FPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LYNK----------NKTIL  187 (379)
T ss_dssp             CCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTE-EEET----------TSSEE
T ss_pred             CCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccce-eccc----------cccee
Confidence            8654 3444443333345666655443221122345666777777665443221111000 0000          00001


Q ss_pred             ccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhhc--ccc
Q 014200          201 ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRL  277 (429)
Q Consensus       201 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L  277 (429)
                      ..+.....+..+.+..........++..+..++.+.+..+ ++.+ ..++..+..|+.+.+..+ ++.+....+.  ..+
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l  265 (379)
T 4h09_A          188 ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL  265 (379)
T ss_dssp             EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred             ccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence            1122223333333333222222334444555555555332 2222 233445555555555443 3333322222  124


Q ss_pred             CEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCC
Q 014200          278 SVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNG  320 (429)
Q Consensus       278 ~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~  320 (429)
                      +.+.+..+ ++.+ ...+.+|++|+.+.+.++.++.++...|.+
T Consensus       266 ~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~  308 (379)
T 4h09_A          266 KTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD  308 (379)
T ss_dssp             CEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred             cccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence            55554322 3332 224556666666666666666665555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.9e-12  Score=120.85  Aligned_cols=160  Identities=17%  Similarity=0.180  Sum_probs=76.6

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCc--cchhccCCCCCCEEECCCCCCCCcc--
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK--LKEDLRNLPLLTVLNVSHNKLSELP--   84 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~~~~i~~~~--   84 (429)
                      +.++.|++++|.++..+...+.....       ..+++|++|++++|.++.  +......+++|+.|++++|.++...  
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~-------~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLG-------SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHS-------SCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHh-------hCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH
Confidence            45666666666655443333322100       012456666666665542  1111223345666666666655221  


Q ss_pred             ---hhh-hCCCCCcEeecCCCcCcc-----CCccccCCCCcCEEecCCCCCCc-----CCccccCCCCCCEEEcCCCccc
Q 014200           85 ---AAI-GELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCIT  150 (429)
Q Consensus        85 ---~~l-~~l~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~  150 (429)
                         ..+ ...++|++|++++|.++.     ++..+..+++|++|++++|.+..     ++..+...++|++|++++|.++
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence               122 234556666666665542     23334455566666666665542     2233444455555555555554


Q ss_pred             c-----CCccccccCCCcEEEccCCccccc
Q 014200          151 S-----LPEDLADCSKMSKLDVEGNKLTVL  175 (429)
Q Consensus       151 ~-----~~~~l~~~~~L~~L~l~~~~~~~~  175 (429)
                      .     ++..+..+++|++|++++|.++..
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            1     222333445555555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=7.7e-11  Score=109.35  Aligned_cols=111  Identities=23%  Similarity=0.303  Sum_probs=80.0

Q ss_pred             CEEEccCC-CCCCCCccccCCCCCCEEEccC-CCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200          278 SVLDLSNN-SLSGLPPEIGKMTTLRKLLLTG-NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL  355 (429)
Q Consensus       278 ~~l~l~~n-~l~~l~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (429)
                      ..++.+++ .++.+|. +..+++|+.|++++ |.++.++...|.+                                   
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~-----------------------------------   54 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRG-----------------------------------   54 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS-----------------------------------
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc-----------------------------------
Confidence            34577776 7777777 77778888888885 8887776554443                                   


Q ss_pred             ccccccccccCCccccCCh-hhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccccccccc
Q 014200          356 SVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWN  428 (429)
Q Consensus       356 ~~~L~~l~l~~~~i~~~~~-~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~  428 (429)
                      .++|+.|+|++|+|+.++. .+..+++|++|+|++|+|+++|........|++|+  +.+|++.+  +|-+.|.
T Consensus        55 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~--l~~N~~~c--~c~l~~~  124 (347)
T 2ifg_A           55 LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV--LSGNPLHC--SCALRWL  124 (347)
T ss_dssp             CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEE--CCSSCCCC--CGGGHHH
T ss_pred             ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEE--eeCCCccC--CCccHHH
Confidence            2477888888888886544 55678888888888888888666544433488888  88888888  5666653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.97  E-value=2.3e-09  Score=99.34  Aligned_cols=83  Identities=24%  Similarity=0.304  Sum_probs=39.1

Q ss_pred             CCccEEEcCC-CCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEec
Q 014200           45 VDLQKLILAH-NNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDC  121 (429)
Q Consensus        45 ~~L~~L~l~~-~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l  121 (429)
                      ++|++|+|++ |.++.++. .|..+++|+.|+|++|.++.++. .|.++++|++|++++|.+..+|........|++|++
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l  110 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVL  110 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEEC
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEe
Confidence            3455555553 55554442 34555555555555555554432 445555555555555555544433222222555555


Q ss_pred             CCCCCC
Q 014200          122 SSNQLK  127 (429)
Q Consensus       122 ~~~~l~  127 (429)
                      .+|.+.
T Consensus       111 ~~N~~~  116 (347)
T 2ifg_A          111 SGNPLH  116 (347)
T ss_dssp             CSSCCC
T ss_pred             eCCCcc
Confidence            444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=2.5e-09  Score=98.89  Aligned_cols=176  Identities=10%  Similarity=0.106  Sum_probs=85.1

Q ss_pred             cCCccCCeEeccCCcCc----------cCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchh-
Q 014200          204 GSLSRLIRLDLHQNRIL----------SIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-  272 (429)
Q Consensus       204 ~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-  272 (429)
                      ..+++|+.|.+......          .+...+..+|+|+.|.++++.-..++. +. +++|++|++..+.+..-.... 
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence            34567777777543221          122334556677777776652123332 22 566777777666654221111 


Q ss_pred             ---hccccCEEEccC--CC------CCCCCccc--cCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcc
Q 014200          273 ---CQLRLSVLDLSN--NS------LSGLPPEI--GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS  339 (429)
Q Consensus       273 ---~~~~L~~l~l~~--n~------l~~l~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (429)
                         ..++|++|+|+.  +.      +.++...+  ..+|+|+.|.+.+|.+.+-           ....           
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~-----------~~~~-----------  271 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV-----------VVEM-----------  271 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH-----------HHHH-----------
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH-----------HHHH-----------
Confidence               124566666642  11      11121222  2356677777766655310           0000           


Q ss_pred             cccCChhhHHhhhhccccccccccccCCcccc-----CChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccC
Q 014200          340 EASTTKEDLITMATRLSVTSKELSLEGMNLSA-----IPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLV  413 (429)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~-----~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~  413 (429)
                               +.. ....++|++|+|++|.++.     ++..+..+++|+.|+|++|.|++ ..+.+...- ...++  ++
T Consensus       272 ---------la~-a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~--~~  338 (362)
T 2ra8_A          272 ---------FLE-SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKID--VS  338 (362)
T ss_dssp             ---------HHH-CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEE--CC
T ss_pred             ---------HHh-CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEE--ec
Confidence                     000 0123566777777776662     34444556677777777776664 333333210 23455  66


Q ss_pred             CCc
Q 014200          414 TNK  416 (429)
Q Consensus       414 ~n~  416 (429)
                      ++.
T Consensus       339 ~~~  341 (362)
T 2ra8_A          339 DSQ  341 (362)
T ss_dssp             SBC
T ss_pred             CCc
Confidence            655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.81  E-value=1.9e-09  Score=90.11  Aligned_cols=107  Identities=21%  Similarity=0.257  Sum_probs=77.0

Q ss_pred             cCCccEEEcCCC-CCC-----ccchhccCCCCCCEEECCCCCCCC-----cchhhhCCCCCcEeecCCCcCcc-----CC
Q 014200           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMK-----IP  107 (429)
Q Consensus        44 ~~~L~~L~l~~~-~i~-----~l~~~~~~~~~L~~L~l~~~~i~~-----~~~~l~~l~~L~~L~l~~~~i~~-----l~  107 (429)
                      +++|++|++++| .+.     .+...+...++|++|++++|.++.     +...+...+.|++|++++|.+..     +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            677888888887 766     244456777888888888888773     34456677788888888887772     45


Q ss_pred             ccccCCCCcCEEec--CCCCCCc-----CCccccCCCCCCEEEcCCCccc
Q 014200          108 DEIGSATALVKFDC--SSNQLKE-----LPSSLGRCLNLSDFKASNNCIT  150 (429)
Q Consensus       108 ~~~~~~~~L~~L~l--~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~  150 (429)
                      ..+...++|++|++  ++|.+..     +...+...+.|++|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            56677778888888  7777762     3445566678888888888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.69  E-value=1.2e-08  Score=85.24  Aligned_cols=115  Identities=14%  Similarity=0.150  Sum_probs=91.7

Q ss_pred             cchhccCCCCCCEEECCCC-CCCC-----cchhhhCCCCCcEeecCCCcCc-----cCCccccCCCCcCEEecCCCCCCc
Q 014200           60 LKEDLRNLPLLTVLNVSHN-KLSE-----LPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLKE  128 (429)
Q Consensus        60 l~~~~~~~~~L~~L~l~~~-~i~~-----~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~l~~  128 (429)
                      +...+...++|++|++++| .++.     +...+...++|++|++++|.+.     .++..+...++|++|++++|.+..
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4445788999999999999 8873     4456788899999999999887     245556777899999999999883


Q ss_pred             -----CCccccCCCCCCEEEc--CCCcccc-----CCccccccCCCcEEEccCCcccc
Q 014200          129 -----LPSSLGRCLNLSDFKA--SNNCITS-----LPEDLADCSKMSKLDVEGNKLTV  174 (429)
Q Consensus       129 -----~~~~~~~~~~L~~L~l--~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~  174 (429)
                           +...+...+.|++|++  ++|.++.     +...+...++|++|++++|.+..
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence                 4566777889999999  8888872     44566777899999999987753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.60  E-value=4.9e-08  Score=90.25  Aligned_cols=58  Identities=24%  Similarity=0.268  Sum_probs=36.4

Q ss_pred             CCccCCeEeccCCcCcc-----CCccccccCCCcEEEcCCCCCCc-cChhhcC-CCCCCEEECCCCc
Q 014200          205 SLSRLIRLDLHQNRILS-----IPSSISGCCSLAEFYMGNNALSA-LPAELGK-LSKLGTLDLHSNQ  264 (429)
Q Consensus       205 ~~~~L~~L~l~~~~~~~-----~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~~-~~~L~~L~l~~n~  264 (429)
                      .+++|+.|+++.|.+..     ++..+..+++|+.|+++.|.++. ....+.. +  ...+++++++
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            45778888888777763     23344567888888888887772 2222332 2  3446777665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.10  E-value=2.1e-06  Score=71.20  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=68.1

Q ss_pred             cCCccEEEcCCC-CCC-----ccchhccCCCCCCEEECCCCCCC-----CcchhhhCCCCCcEeecCCCcCc-----cCC
Q 014200           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIP  107 (429)
Q Consensus        44 ~~~L~~L~l~~~-~i~-----~l~~~~~~~~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~i~-----~l~  107 (429)
                      .+.|++|+++++ .+.     .+.+.+.....|+.|+|++|.++     .+.+++...+.|++|++++|.|.     .+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            456777777764 555     34445667777777777777776     33456667777888888777776     334


Q ss_pred             ccccCCCCcCEEecCCCC---CC-----cCCccccCCCCCCEEEcCCCcc
Q 014200          108 DEIGSATALVKFDCSSNQ---LK-----ELPSSLGRCLNLSDFKASNNCI  149 (429)
Q Consensus       108 ~~~~~~~~L~~L~l~~~~---l~-----~~~~~~~~~~~L~~L~l~~~~~  149 (429)
                      +.+...+.|++|+++++.   +.     .+...+...+.|+.|+++.+..
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            556666678888886543   23     2334455666777777766543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.02  E-value=2.2e-06  Score=75.12  Aligned_cols=78  Identities=26%  Similarity=0.288  Sum_probs=50.4

Q ss_pred             cCCCCCCEEECCCCCCCCcc---hhhhCCCCCcEeecCCCcCccCCc--cccCCCCcCEEecCCCCCCc-CC-------c
Q 014200           65 RNLPLLTVLNVSHNKLSELP---AAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDCSSNQLKE-LP-------S  131 (429)
Q Consensus        65 ~~~~~L~~L~l~~~~i~~~~---~~l~~l~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l~~~~l~~-~~-------~  131 (429)
                      .++++|+.|++++|.+..++   ..+..+++|++|++++|.+..+..  .+..+ +|++|++.+|.+.. +|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            45677777777777776543   455677778888887777775522  23333 77788887777762 32       1


Q ss_pred             cccCCCCCCEEE
Q 014200          132 SLGRCLNLSDFK  143 (429)
Q Consensus       132 ~~~~~~~L~~L~  143 (429)
                      .+..+++|+.|+
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            245667777764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.90  E-value=2.1e-05  Score=68.94  Aligned_cols=105  Identities=21%  Similarity=0.242  Sum_probs=71.3

Q ss_pred             HhhhcCe--eeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccc---hhccCCCCCCEEECCCCCCC
Q 014200            7 AARTSGS--LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLK---EDLRNLPLLTVLNVSHNKLS   81 (429)
Q Consensus         7 ~~~~l~~--L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~---~~~~~~~~L~~L~l~~~~i~   81 (429)
                      ..+.|..  ++++.|....++..+ +....        .+++|++|+|++|.++.++   ..+..+++|+.|+|++|.+.
T Consensus       139 ~dp~L~~~~l~l~~N~~~~~~~~l-~i~~~--------~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLNRRSCMAATL-RIIEE--------NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             GCHHHHHTTCCCCTTSHHHHHHHH-HHHHH--------HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             CCcchhhcCccccCCHHHHHHHHH-HHHHh--------hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            3444554  667777655444322 11111        3678999999999988655   45678999999999999988


Q ss_pred             Ccch--hhhCCCCCcEeecCCCcCc-cCCc-------cccCCCCcCEEec
Q 014200           82 ELPA--AIGELHMLKSLDVSFNSIM-KIPD-------EIGSATALVKFDC  121 (429)
Q Consensus        82 ~~~~--~l~~l~~L~~L~l~~~~i~-~l~~-------~~~~~~~L~~L~l  121 (429)
                      .+.+  .+..+ +|++|++++|.+. .+|+       .+..+++|+.|+-
T Consensus       210 ~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          210 SERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             SGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             CchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            7632  33444 8999999999886 3442       3567889988863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.89  E-value=2.8e-06  Score=69.10  Aligned_cols=89  Identities=12%  Similarity=0.173  Sum_probs=57.8

Q ss_pred             cccCEEEccCCCCCCC-CccccCCCCCCEEEccCCC-CCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhh
Q 014200          275 LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA  352 (429)
Q Consensus       275 ~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (429)
                      ..|++||+++|.+++. ...+.+|++|+.|++++|. +++           ..+..+..                    .
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-----------~gL~~L~~--------------------~  109 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-----------GCLERLSQ--------------------L  109 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-----------HHHHHHHT--------------------C
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-----------HHHHHHHh--------------------c
Confidence            3599999999998872 3456889999999999986 432           22222110                    0


Q ss_pred             hccccccccccccCCc-cc-cCChhhhccCCCcEEeCCCCc-ccc
Q 014200          353 TRLSVTSKELSLEGMN-LS-AIPSEIWEAGEITKLDLSRNS-IQE  394 (429)
Q Consensus       353 ~~~~~~L~~l~l~~~~-i~-~~~~~~~~~~~L~~L~ls~n~-i~~  394 (429)
                      ...+++|++|+|++|. |+ .-...+..+++|++|+|++|. +++
T Consensus       110 ~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          110 ENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             ccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            0013467888888874 66 233455677888888888874 665

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.85  E-value=1.9e-05  Score=65.54  Aligned_cols=112  Identities=15%  Similarity=0.192  Sum_probs=85.8

Q ss_pred             chhccCCCCCCEEECCCC-CCCC-----cchhhhCCCCCcEeecCCCcCc-----cCCccccCCCCcCEEecCCCCCC--
Q 014200           61 KEDLRNLPLLTVLNVSHN-KLSE-----LPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK--  127 (429)
Q Consensus        61 ~~~~~~~~~L~~L~l~~~-~i~~-----~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~l~--  127 (429)
                      ...+.+.+.|+.|+++++ .+..     +.+++...+.|+.|++++|.+.     .+++.+...+.|++|+|++|.+.  
T Consensus        34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~  113 (197)
T 1pgv_A           34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE  113 (197)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence            334577889999999985 7773     4567888899999999999887     45566777889999999999988  


Q ss_pred             ---cCCccccCCCCCCEEEcCCC---ccc-----cCCccccccCCCcEEEccCCcc
Q 014200          128 ---ELPSSLGRCLNLSDFKASNN---CIT-----SLPEDLADCSKMSKLDVEGNKL  172 (429)
Q Consensus       128 ---~~~~~~~~~~~L~~L~l~~~---~~~-----~~~~~l~~~~~L~~L~l~~~~~  172 (429)
                         .+...+...+.|++|+++++   .+.     .+.+.+...+.|+.|+++.+..
T Consensus       114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence               34456677778999999865   333     2345577778999999987654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.85  E-value=1.5e-05  Score=61.79  Aligned_cols=63  Identities=25%  Similarity=0.390  Sum_probs=53.8

Q ss_pred             ccccccCCccc--cCChhhhccCCCcEEeCCCCccccCCh-hhcccccceeeccccCCCccccccccccccc
Q 014200          360 KELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLVTNKESCISGCYLYWN  428 (429)
Q Consensus       360 ~~l~l~~~~i~--~~~~~~~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~  428 (429)
                      ..++.++++++  .+|..+  -++|++|+|++|+|+.+|. .+..+++|++|+  |.+|++.+  +|-+.|.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~--L~~NP~~C--dC~l~~l   76 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAH--LGANPWRC--DCRLVPL   76 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEE--CCSSCCBC--SGGGHHH
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEE--ecCCCeec--cCccHHH
Confidence            57889999998  999654  3579999999999999765 467899999999  99999999  8888774

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.80  E-value=1.6e-05  Score=64.59  Aligned_cols=81  Identities=11%  Similarity=0.214  Sum_probs=53.9

Q ss_pred             cCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCc-Cccccchhh------ccccCEEEccCC-CCCC-CCccccCCC
Q 014200          229 CCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQ-LKEYCVEAC------QLRLSVLDLSNN-SLSG-LPPEIGKMT  298 (429)
Q Consensus       229 ~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~~------~~~L~~l~l~~n-~l~~-l~~~l~~~~  298 (429)
                      ...|++|++++|.++.. ...+..+++|++|++++|. +++......      ..+|++|++++| ++|+ -...+.+++
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            34677777777776632 3345677788888888774 553222211      235899999887 4776 123467889


Q ss_pred             CCCEEEccCCC
Q 014200          299 TLRKLLLTGNP  309 (429)
Q Consensus       299 ~L~~L~l~~~~  309 (429)
                      +|+.|++++|+
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            99999999986

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.98  E-value=0.00098  Score=51.45  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=16.0

Q ss_pred             CCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcC
Q 014200           70 LTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSI  103 (429)
Q Consensus        70 L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i  103 (429)
                      |+.|+|++|.|+.++. .|..+++|++|++++|.+
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4444444444444433 344444555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	429
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-08
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	5e-07
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.002
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.9 bits (198), Expect = 1e-17
 Identities = 58/280 (20%), Positives = 109/280 (38%), Gaps = 25/280 (8%)

Query: 68  PLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSSNQ 125
           P   +L++ +NK++E+       L  L +L +  N I KI P        L +   S NQ
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           LKELP  + +   L + +   N IT + + + +      +   G      S     ++  
Sbjct: 91  LKELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 186 LTELIA---SKNLLNGMPETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNA 241
           + +L     +   +  +P+  G    L  L L  N+I     +S+ G  +LA+  +  N+
Sbjct: 149 MKKLSYIRIADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 242 -LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPE------ 293
             +     L     L  L L++N+L +          + V+ L NN++S +         
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 266

Query: 294 -IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSR 332
              K  +   + L  NP++           P+  + +  R
Sbjct: 267 YNTKKASYSGVSLFSNPVQYWEIQ------PSTFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.9 bits (167), Expect = 1e-13
 Identities = 48/277 (17%), Positives = 106/277 (38%), Gaps = 23/277 (8%)

Query: 145 SNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETI 203
           S+  +  +P+DL      + LD++ NK+T + +    +   L  LI   N ++ + P   
Sbjct: 18  SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 204 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHS 262
             L +L RL L +N++  +P  +       E  +  N ++ +       L+++  ++L +
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQ--ELRVHENEITKVRKSVFNGLNQMIVVELGT 133

Query: 263 NQLKEYCVEACQL----RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 318
           N LK   +E        +LS + +++ +++ +P  +    +L +L L GN +  + ++ +
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASL 191

Query: 319 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 378
            G        L        D+ +      L  +                 L  +P  + +
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN-----------NNKLVKVPGGLAD 240

Query: 379 AGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTN 415
              I  + L  N+I  +            K +     
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 277

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 1e-12
 Identities = 55/325 (16%), Positives = 110/325 (33%), Gaps = 88/325 (27%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLT 71
            +  S+  L  VP ++  +                  L L +N I ++K+ D +NL  L 
Sbjct: 14  VVQCSDLGLEKVPKDLPPD---------------TALLDLQNNKITEIKDGDFKNLKNLH 58

Query: 72  VLNVSHNKLSEL-PAAIGELHMLKSLDVSFNSIMKIPDEI-------------------- 110
            L + +NK+S++ P A   L  L+ L +S N + ++P+++                    
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 118

Query: 111 -----GSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
                     +               +      LS  + ++  IT++P+ L     +++L
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTEL 176

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNL------------------------LNGMPE 201
            ++GNK+T +    +     L +L  S N                         L  +P 
Sbjct: 177 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 236

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 261
            +     +  + LH N I +I S+                    P    K +    + L 
Sbjct: 237 GLADHKYIQVVYLHNNNISAIGSND----------------FCPPGYNTKKASYSGVSLF 280

Query: 262 SNQLKEYCVEACQLR----LSVLDL 282
           SN ++ + ++    R     + + L
Sbjct: 281 SNPVQYWEIQPSTFRCVYVRAAVQL 305

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 2e-13
 Identities = 40/190 (21%), Positives = 81/190 (42%), Gaps = 8/190 (4%)

Query: 119 FDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNN 178
              ++NQ+ ++    G   NL +   + N +  +   LA  + ++ LD+  N+++ L+  
Sbjct: 202 LIATNNQISDITPL-GILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP- 258

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 238
            ++  T LTEL    N ++ +    G  +            L   S IS   +L    + 
Sbjct: 259 -LSGLTKLTELKLGANQISNISPLAGLTAL--TNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 239 NNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMT 298
            N +S +   +  L+KL  L   +N++ +    A    ++ L   +N +S L P +  +T
Sbjct: 316 FNNISDIS-PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLT 373

Query: 299 TLRKLLLTGN 308
            + +L L   
Sbjct: 374 RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.6 bits (161), Expect = 1e-12
 Identities = 62/361 (17%), Positives = 113/361 (31%), Gaps = 29/361 (8%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L      I+ + + +  L  LT +N S+N+L+++   +  L  L  + ++ N I  I
Sbjct: 46  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI 103

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                           +NQ+ ++              +SN              +     
Sbjct: 104 TPLANLTNL-TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            +   L  L+N                +        +  L+ L  L    N+I  I    
Sbjct: 163 NQVTDLKPLANLTTLERLD------ISSNKVSDISVLAKLTNLESLIATNNQISDITPLG 216

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
               +L E  +  N L  +   L  L+ L  LDL +NQ+      +   +L+ L L  N 
Sbjct: 217 I-LTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 274

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
           +S + P            L G    T      N             L        + +  
Sbjct: 275 ISNISP------------LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 322

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
             ++  T+L    + L      +S + S +     I  L    N I +L P L++   + 
Sbjct: 323 SPVSSLTKL----QRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLTP-LANLTRIT 376

Query: 407 V 407
            
Sbjct: 377 Q 377

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 41  WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSF 100
                +L  L L  NNI  +   + +L  L  L  ++NK+S++  ++  L  +  L    
Sbjct: 303 ISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGH 360

Query: 101 NSIMKIPDEIGSATALVKFDCSSN 124
           N I  +   + + T + +   +  
Sbjct: 361 NQISDLT-PLANLTRITQLGLNDQ 383

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 4e-10
 Identities = 38/206 (18%), Positives = 73/206 (35%), Gaps = 5/206 (2%)

Query: 109 EIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP-EDLADCSKMSKLDV 167
           E+    + ++ +C    L  LP  L +  + +    S N + +     L   +++++L++
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSIS 227
           +  +LT L  +         +L  ++     +         ++ +  ++   L + +   
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 228 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNN 285
                  +  GN   +  P  L    KL  L L +N L E           L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 286 SLSGLPPEIGKMTTLRKLLLTGNPLR 311
           SL  +P        L    L GNP  
Sbjct: 183 SLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 2e-08
 Identities = 35/199 (17%), Positives = 66/199 (33%), Gaps = 4/199 (2%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP-AAIGELHMLKSLDVSFNSIM 104
              ++     N+  L  DL      T+L++S N L     A +     L  L++    + 
Sbjct: 11  SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 105 KIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK 164
           K+  +             +                    + N   +     L    ++ +
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128

Query: 165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP 223
           L ++GN+L  L   L+     L +L  + N L  +    +  L  L  L L +N + +IP
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP 188

Query: 224 SSISGCCSLAEFYMGNNAL 242
               G   L   ++  N  
Sbjct: 189 KGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 19/208 (9%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKL-KEDLRNLPLLT 71
            +N   R+L  +P ++ K+                  L L+ N +       L     LT
Sbjct: 14  EVNCDKRNLTALPPDLPKD---------------TTILHLSENLLYTFSLATLMPYTRLT 58

Query: 72  VLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS 131
            LN+   +L++     G L +L +LD+S N +  +P    +  AL   D S N+L  LP 
Sbjct: 59  QLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 132 SLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTEL 189
              R L      +   N   T  P  L    K+ KL +  N LT L   L+     L  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 190 IASKNLLNGMPETIGSLSRLIRLDLHQN 217
           +  +N L  +P+       L    LH N
Sbjct: 178 LLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 6e-05
 Identities = 39/227 (17%), Positives = 75/227 (33%), Gaps = 17/227 (7%)

Query: 202 TIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDL 260
            +  ++  + ++  +  + ++P  +         ++  N L       L   ++L  L+L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 261 HSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 320
              +L +  V+     L  LDLS+N L  LP     +  L  L ++ N L +L    + G
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 321 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAG 380
                  YL+    +       T    L  ++                       +    
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA----------NNNLTELPAGLLNGLE 172

Query: 381 EITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYW 427
            +  L L  NS+  +P        L   F+ L  N   C   C + +
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHLLP--FAFLHGNPWLC--NCEILY 215

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.5 bits (137), Expect = 9e-10
 Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 11/252 (4%)

Query: 70  LTVLNVSHNKLS---ELPAAIGELHMLKS--LDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           +  L++S   L     +P+++  L  L    +    N +  IP  I   T L     +  
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 125 QLKELPSSLGRCLNL--SDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIAS 182
            +          +    +   + N    +LP  ++    +  +  +GN+++    +   S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 183 WTMLT--ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 240
           ++ L     I+   L   +P T  +L+                       +  + ++  N
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQL-RLSVLDLSNNSLSGLPPEIGKMT 298
           +L+    ++G    L  LDL +N++     +   QL  L  L++S N+L G  P+ G + 
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 299 TLRKLLLTGNPL 310
                    N  
Sbjct: 292 RFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 8e-04
 Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 52  LAHNNIE-KLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFN 101
           L +N I   L + L  L  L  LNVS N L       G L        + N
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 57.1 bits (136), Expect = 1e-09
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
             P L  LNVS+NKL ELPA    L   + L  SFN + ++P+   +   L +     N 
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVPELPQN---LKQLHVEYNP 335

Query: 126 LKELPSSLGRCLNL 139
           L+E P       +L
Sbjct: 336 LREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 5/73 (6%)

Query: 229 CCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS 288
             SL E  + NN L  LPA   +L +L       N L E  V      L  L +  N L 
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERL---IASFNHLAE--VPELPQNLKQLHVEYNPLR 337

Query: 289 GLPPEIGKMTTLR 301
             P     +  LR
Sbjct: 338 EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.7 bits (122), Expect = 6e-08
 Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 29  YKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG 88
           Y N               L++L +++N + +L      L     L  S N L+E+P    
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL---ERLIASFNHLAEVP---E 321

Query: 89  ELHMLKSLDVSFNSIMKIPDEIGSATAL 116
               LK L V +N + + PD   S   L
Sbjct: 322 LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.1 bits (115), Expect = 4e-07
 Identities = 52/338 (15%), Positives = 92/338 (27%), Gaps = 51/338 (15%)

Query: 14  LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVL 73
           L L+N  L  +P                     L+ L+ + N++ +L E  ++   L  L
Sbjct: 43  LELNNLGLSSLPELPPH----------------LESLVASCNSLTELPELPQS---LKSL 83

Query: 74  NVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSL 133
            V +N L  L      L  L   +     + ++ +        V  +         PS  
Sbjct: 84  LVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE 143

Query: 134 GRCLNLSDFKASNNCITSLPEDLADCSKMSK---------------------LDVEGNKL 172
                 +  +                   S                         E   L
Sbjct: 144 FIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNL 203

Query: 173 TVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
             L+     +  + T      +L                        +S           
Sbjct: 204 PFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELP 263

Query: 233 AEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP 292
              Y  N + + + +       L  L++ +N+L E  + A   RL  L  S N L+ +P 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRLERLIASFNHLAEVPE 321

Query: 293 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR 330
                  L++L +  NPLR           P  ++ LR
Sbjct: 322 LPQN---LKQLHVEYNPLREFPDI------PESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.5 bits (111), Expect = 1e-06
 Identities = 53/361 (14%), Positives = 98/361 (27%), Gaps = 49/361 (13%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
             +L L +  +  L E   +L     L  S N L+ELP        LKSL V  N++  +
Sbjct: 40  AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQS---LKSLLVDNNNLKAL 93

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
            D +      +    +  +      +      +     S   +  LP  L   +  +   
Sbjct: 94  SD-LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
            E  +L  L           +        L+      G+       +L     L+   + 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 227 SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 286
           +           +     +              L    + E            L   N S
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 287 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 346
            + +        +L +L ++ N L  L         PAL   L                 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIEL---------PALPPRL----------------- 306

Query: 347 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 406
                        + L     +L+ +P        + +L +  N ++E P    S   L+
Sbjct: 307 -------------ERLIASFNHLAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLR 350

Query: 407 V 407
           +
Sbjct: 351 M 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 57  IEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATAL 116
           + +L++ L        L +++  LS LP     L   +SL  S NS+ ++P+   S  +L
Sbjct: 29  VSRLRDCLDRQ--AHELELNNLGLSSLPELPPHL---ESLVASCNSLTELPELPQSLKSL 83

Query: 117 VKFDCSSNQLKELPSSLGRC 136
           +  + +   L +LP  L   
Sbjct: 84  LVDNNNLKALSDLPPLLEYL 103

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 5e-06
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 19/82 (23%)

Query: 13  SLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTV 72
            LN+SN  L ++P    +                L++LI + N++ ++ E  +N   L  
Sbjct: 288 ELNVSNNKLIELPALPPR----------------LERLIASFNHLAEVPELPQN---LKQ 328

Query: 73  LNVSHNKLSELPAAIGELHMLK 94
           L+V +N L E P     +  L+
Sbjct: 329 LHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 6e-04
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 361 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCI 420
           EL L  + LS++P        +  L  S NS+ ELP    S  SL V  ++L    +   
Sbjct: 42  ELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP 98

Query: 421 SGCYLYWN 428
              YL  +
Sbjct: 99  LLEYLGVS 106

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 269 CVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 319
            +  C  R    L+L+N  LS LP        L  L+ + N L  L     +
Sbjct: 31  RLRDCLDRQAHELELNNLGLSSLPELPPH---LESLVASCNSLTELPELPQS 79

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 2e-09
 Identities = 47/290 (16%), Positives = 93/290 (32%), Gaps = 26/290 (8%)

Query: 9   RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKED----L 64
               + +   + L+ VP  +                   Q++ L  N I  +        
Sbjct: 11  EPKVTTSCPQQGLQAVPVGIPAA---------------SQRIFLHGNRISHVPAASFRAC 55

Query: 65  RNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN 124
           RNL +L + +    ++         L     L  +       P        L        
Sbjct: 56  RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 125 QLKELPSS-LGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIAS 182
            L+EL          L      +N + +LP+D   D   ++ L + GN+++ +       
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175

Query: 183 WTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 240
              L  L+  +N +    P     L RL+ L L  N + ++   +++   +L    + +N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 241 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG 289
                       + L      S+++   C    +L    +  L+ N L G
Sbjct: 236 PWVCDCRARPLWAWLQKFRGSSSEVP--CSLPQRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 52/250 (20%), Positives = 85/250 (34%), Gaps = 11/250 (4%)

Query: 71  TVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFDCSSNQLKEL 129
              +     L  +P  I      + + +  N I  +P     +   L      SN L  +
Sbjct: 14  VTTSCPQQGLQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 130 PSSLGRCLNLSDFKASNNCITS---LPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTML 186
            ++    L L +    ++        P       ++  L ++   L  L   L      L
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 187 TELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSA 244
             L    N L  +  +T   L  L  L LH NRI S+P  +  G  SL    +  N ++ 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 245 L-PAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLR 301
           + P     L +L TL L +N L     EA      L  L L++N              L+
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251

Query: 302 KLLLTGNPLR 311
           K   + + + 
Sbjct: 252 KFRGSSSEVP 261

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 4/109 (3%)

Query: 48  QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIP 107
           + L LAH ++  L   L  L L+T L++SHN+L  LP A+  L  L+ L  S N++  + 
Sbjct: 1   RVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59

Query: 108 DEIGSATALVKFDCSSNQLKELP--SSLGRCLNLSDFKASNNCITSLPE 154
                          +N+L++      L  C  L       N +     
Sbjct: 60  GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 7e-08
 Identities = 31/125 (24%), Positives = 41/125 (32%), Gaps = 12/125 (9%)

Query: 212 LDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVE 271
           L L     L++   +     +    + +N L ALP  L  L  L  L    N L+     
Sbjct: 3   LHLAHKD-LTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61

Query: 272 ACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 329
           A   RL  L L NN L        +     L  L L GN L              + + L
Sbjct: 62  ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE---------EGIQERL 112

Query: 330 RSRLP 334
              LP
Sbjct: 113 AEMLP 117

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 5/115 (4%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNL 179
             +   L  L   L + L ++    S+N + +LP  LA    +  L    N L  +    
Sbjct: 4   HLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 180 IASWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIPSSISGCCSL 232
                 L EL+   N L      + + S  RL+ L+L  N +            +
Sbjct: 63  N--LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 10/123 (8%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKN 194
           R L+L+     +  +T L   L     ++ LD+  N+L  L   L A   +     +   
Sbjct: 1   RVLHLA-----HKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA 54

Query: 195 LLNGMPETIGSLSRLIRLDLHQNRI--LSIPSSISGCCSLAEFYMGNNALSALPAELGKL 252
                 + + +L RL  L L  NR+   +    +  C  L    +  N+L        +L
Sbjct: 55  --LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112

Query: 253 SKL 255
           +++
Sbjct: 113 AEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 13/136 (9%)

Query: 279 VLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENED 338
           VL L++  L+ L   + ++  +  L L+ N LR L  +L       +L+   + L   + 
Sbjct: 2   VLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 339 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE 398
                  ++L+            L    +  SA    +     +  L+L  NS+ +    
Sbjct: 61  VANLPRLQELL------------LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

Query: 399 LSSCASLQVKFSDLVT 414
               A +    S ++T
Sbjct: 109 QERLAEMLPSVSSILT 124

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.9 bits (112), Expect = 5e-07
 Identities = 28/178 (15%), Positives = 58/178 (32%), Gaps = 5/178 (2%)

Query: 120 DCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGN-KLTVLSNN 178
           DC+   LKE+P  +           +     S          + KL+++ N    +  N 
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73

Query: 179 LIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYM 237
              +  +    +    +     +    L +L  L+L+ N+I  + P S     SL    +
Sbjct: 74  FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

Query: 238 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEI 294
            +N  +           L    L+    +  C    ++R + + DL ++         
Sbjct: 134 ASNPFNCNCHLAWFAEWLRKKSLNGGAAR--CGAPSKVRDVQIKDLPHSEFKCSSENS 189

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 5/153 (3%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    +E+LK  +      +   +    L   P  +   ++   L+   +    +     
Sbjct: 4   LKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDP-DLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 112 SATALVKFDCSSNQL---KELPSSLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLDV 167
           +   L+  + S+N+L    ++ S + +  NL     S N + S  E D     K+ +L +
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWL 122

Query: 168 EGNKLTVLSNNLIASWTMLTELIASKNLLNGMP 200
           +GN L+    +     + + E       L+G  
Sbjct: 123 DGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE 155

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 44/339 (12%), Positives = 89/339 (26%), Gaps = 42/339 (12%)

Query: 43  EAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           E   L+   +   + + +   L     +  + +S N +       L   I     L+  +
Sbjct: 6   EGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 98  VSFNSIMKIPDEIGSA-TALVKFDCSSNQLKELPSSLGRCLNLSDF-------------- 142
            S     ++ DEI  A   L++      +L  +  S       +                
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 143 ---------------KASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLT 187
                           A      ++ +   +   +  +    N+L   S    A      
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 188 ELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA 247
            L+ +  ++       G    L+    +   +  +    +    L    +     S    
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 248 ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPE------IGKMTTLR 301
               L+        +  + +   +   + L  L L  N +              KM  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 302 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSE 340
            L L GN        +V+          R  L E +D E
Sbjct: 306 FLELNGNRFSEE-DDVVDEIREVFSTRGRGELDELDDME 343

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 27/193 (13%), Positives = 60/193 (31%), Gaps = 9/193 (4%)

Query: 47  LQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKI 106
           +  L      +  + E ++ L  L  L +  N++++L        + +            
Sbjct: 43  ITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 107 PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD 166
                 +   +    +        + L     L         I+ L          +   
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPL------AGLTNLQY 155

Query: 167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSI 226
           +      V     +A+ + LT L A  N ++ +   + SL  LI + L  N+I  +   +
Sbjct: 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS-PL 213

Query: 227 SGCCSLAEFYMGN 239
           +   +L    + N
Sbjct: 214 ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 33/241 (13%), Positives = 69/241 (28%), Gaps = 32/241 (13%)

Query: 66  NLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQ 125
            L     +    + +++      +L  + +L      +  I   +     L+  +   NQ
Sbjct: 17  ALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74

Query: 126 LKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTM 185
           + +L        NL+           L    A     S   ++     +     +A  + 
Sbjct: 75  ITDLA----PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 245
           L  L    N +  +    G  +       +     S  + ++    L      +N +S +
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDI 188

Query: 246 PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL 305
              L  L  L                        + L NN +S + P +   + L  + L
Sbjct: 189 S-PLASLPNL----------------------IEVHLKNNQISDVSP-LANTSNLFIVTL 224

Query: 306 T 306
           T
Sbjct: 225 T 225

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 3e-05
 Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 45  VDLQKLILAHNNI--EKLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLD 97
           +D+Q L +    +   +  E L  L    V+ +    L+E     + +A+     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 98  VSFNSI 103
           +  N +
Sbjct: 62  LRSNEL 67

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 17/103 (16%)

Query: 223 PSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEA----- 272
                    L   ++ +  +S     +L A L     L  LDL +N L +  +       
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 273 --CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 313
                 L  L L +   S    +      L+ L      LR +
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDR-----LQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 25/107 (23%)

Query: 93  LKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRC--LNLSDFKASNNCIT 150
           ++SLD+    +                  S  +  EL   L +C  + L D   +     
Sbjct: 4   IQSLDIQCEEL------------------SDARWAELLPLLQQCQVVRLDDCGLTEARCK 45

Query: 151 SLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTELIAS 192
            +   L     +++L++  N+L       +   L      + +L   
Sbjct: 46  DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 0.004
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLT-----VLSNNLIASWTMLTEL 189
           R L L+D   S++  +SL   L     + +LD+  N L       L  ++     +L +L
Sbjct: 372 RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 431

Query: 190 IASKNLLNG 198
           +      + 
Sbjct: 432 VLYDIYWSE 440

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 9e-05
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 1/102 (0%)

Query: 52  LAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIG 111
           L    IE+  +   N      L++   K+  +      L    ++D S N I K+     
Sbjct: 3   LTAELIEQAAQ-YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPL 61

Query: 112 SATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLP 153
                     ++   +          +L++   +NN +  L 
Sbjct: 62  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELG 103

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM-GNNALSALPAEL-GKLSKLGTLDLHS 262
                  L   ++  L     + G  +L E Y+     L  L       L +L  L +  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 263 NQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 311
           + L+    +A     RLS L+LS N+L  L  +  +  +L++L+L+GNPL 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.001
 Identities = 27/136 (19%), Positives = 48/136 (35%), Gaps = 4/136 (2%)

Query: 135 RCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK-LTVLSNNLIASWTMLTELIASK 193
                S  + + +        L     +++L +E  + L  L    +     L  L   K
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 194 NLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL--SALPAELG 250
           + L  + P+      RL RL+L  N + S+        SL E  +  N L  S     L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

Query: 251 KLSKLGTLDLHSNQLK 266
           +  + G   +   +L+
Sbjct: 126 RWEEEGLGGVPEQKLQ 141

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 24/187 (12%), Positives = 59/187 (31%), Gaps = 9/187 (4%)

Query: 46  DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMK 105
           +  K +L   N+        +L  +T L      +  +   +  L+ L  ++ S N +  
Sbjct: 19  EKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD 76

Query: 106 IPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL 165
           I         +     ++             L             +   D+     ++ L
Sbjct: 77  ITPLKNLTKLVDILMNNNQIADI------TPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 166 DVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS 225
           +        +S+    S     + +   +      + + +L+ L RLD+  N++  I   
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS-V 189

Query: 226 ISGCCSL 232
           ++   +L
Sbjct: 190 LAKLTNL 196

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 5/160 (3%)

Query: 177 NNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 236
            +++A+     EL      +  M  T+ +L     L L  N I  I  S+SG  +L    
Sbjct: 18  KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILS 76

Query: 237 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP--PEI 294
           +G N +  +         L  L +  NQ+         + L VL +SNN ++      ++
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKL 136

Query: 295 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 334
             +  L  LLL GNPL        N  T      +  RLP
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKE--NNATSEYRIEVVKRLP 174

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.004
 Identities = 9/45 (20%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 64  LRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP 107
                   +L++S  ++  LP+  +  L  L++   S  ++ K+P
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLP 239

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	429
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.83
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.9
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.79

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=3.2e-28  Score=228.16  Aligned_cols=321  Identities=24%  Similarity=0.348  Sum_probs=245.2

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCC
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~  123 (429)
                      +.+|++|++++++|+.+. .+..+++|++|++++|.++.+++ ++++++|++|++++|.+..+++ +.++++|+.+++.+
T Consensus        43 l~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~  119 (384)
T d2omza2          43 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  119 (384)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             hCCCCEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc-cccccccccccccc
Confidence            567999999999998874 67889999999999999988864 8899999999999998887754 78899999999988


Q ss_pred             CCCCcCCccccCCCCCCEEEcCCCccccCC--------------------ccccccCCCcEEEccCCcccccChhhhhcc
Q 014200          124 NQLKELPSSLGRCLNLSDFKASNNCITSLP--------------------EDLADCSKMSKLDVEGNKLTVLSNNLIASW  183 (429)
Q Consensus       124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  183 (429)
                      +.+..++. ......+.......+.+....                    ..+.............+....  ......+
T Consensus       120 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l  196 (384)
T d2omza2         120 NQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKL  196 (384)
T ss_dssp             SCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC--CGGGGGC
T ss_pred             cccccccc-ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccc--ccccccc
Confidence            88776543 233345555544433332110                    112222333333333333222  2235677


Q ss_pred             cccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCC
Q 014200          184 TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSN  263 (429)
Q Consensus       184 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n  263 (429)
                      +.++.+.++++.++.++. ....++|+.+++++|.+..++ .+..+++++.+++++|.++.+++ +..+++|++++++++
T Consensus       197 ~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~  273 (384)
T d2omza2         197 TNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN  273 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred             cccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCc
Confidence            888999999988877654 456678999999999888764 57788999999999999887764 778899999999999


Q ss_pred             cCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccC
Q 014200          264 QLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST  343 (429)
Q Consensus       264 ~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (429)
                      .+..++.......++.+.++.|.+++++ .+..+++++.+++++|.+++++.                            
T Consensus       274 ~l~~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~~----------------------------  324 (384)
T d2omza2         274 QISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDISP----------------------------  324 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCGG----------------------------
T ss_pred             ccCCCCcccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCcc----------------------------
Confidence            9988876666666999999999888864 47888999999999998876531                            


Q ss_pred             ChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCC
Q 014200          344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTN  415 (429)
Q Consensus       344 ~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n  415 (429)
                               ....++|++|++++|+++.++ .+..+++|++|++++|++++++. +.++++|++|+  +++|
T Consensus       325 ---------l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~--L~~N  383 (384)
T d2omza2         325 ---------VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLG--LNDQ  383 (384)
T ss_dssp             ---------GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEE--CCCE
T ss_pred             ---------cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEee--CCCC
Confidence                     112368999999999999877 58899999999999999999765 88999999999  9987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=2.2e-26  Score=215.55  Aligned_cols=324  Identities=23%  Similarity=0.347  Sum_probs=252.6

Q ss_pred             HHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch
Q 014200            6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (429)
Q Consensus         6 ~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~   85 (429)
                      +...++++|++++++++++. . ++            .+++|++|++++|+++.++ .++++++|++|++++|.+..++ 
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~-g-l~------------~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~-  104 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSID-G-VE------------YLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-  104 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCT-T-GG------------GCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-
T ss_pred             HHhCCCCEEECCCCCCCCcc-c-cc------------cCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccccc-
Confidence            34668999999999998873 2 22            2788999999999999997 4999999999999999998875 


Q ss_pred             hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCC--------------------ccccCCCCCCEEEcC
Q 014200           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELP--------------------SSLGRCLNLSDFKAS  145 (429)
Q Consensus        86 ~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~--------------------~~~~~~~~L~~L~l~  145 (429)
                      .++++++|+.|+++++.+..++.. .....+.......+.+..+.                    ..+............
T Consensus       105 ~l~~l~~L~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (384)
T d2omza2         105 PLANLTNLTGLTLFNNQITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS  183 (384)
T ss_dssp             GGTTCTTCCEEECCSSCCCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccchhhhhcccccccccccc
Confidence            488999999999999888765442 33344444443332222110                    111222222333333


Q ss_pred             CCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCcc
Q 014200          146 NNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS  225 (429)
Q Consensus       146 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  225 (429)
                      .+.. ........+++++.++++++.+..+.+  ...+++++++++++|.++.++ .+..+++++.+++.+|.+..++. 
T Consensus       184 ~~~~-~~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-  258 (384)
T d2omza2         184 SNKV-SDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-  258 (384)
T ss_dssp             SSCC-CCCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             cccc-ccccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-
Confidence            3322 223456778899999999998887754  567789999999999998875 57788999999999999987754 


Q ss_pred             ccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEc
Q 014200          226 ISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLL  305 (429)
Q Consensus       226 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l  305 (429)
                      +..+++|++++++++.++.+++ +..++.++.+.+..|.+.++.......+++++++++|++++++. +..+++|+.|++
T Consensus       259 ~~~~~~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L  336 (384)
T d2omza2         259 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF  336 (384)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred             ccccccCCEeeccCcccCCCCc-cccccccccccccccccccccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEEC
Confidence            7889999999999999988764 77889999999999999988776666779999999999999864 889999999999


Q ss_pred             cCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEE
Q 014200          306 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL  385 (429)
Q Consensus       306 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L  385 (429)
                      ++|.+++++.  +                                   ..+++|++|++++|+++.++. +..+++|++|
T Consensus       337 ~~n~l~~l~~--l-----------------------------------~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L  378 (384)
T d2omza2         337 ANNKVSDVSS--L-----------------------------------ANLTNINWLSAGHNQISDLTP-LANLTRITQL  378 (384)
T ss_dssp             CSSCCCCCGG--G-----------------------------------GGCTTCCEEECCSSCCCBCGG-GTTCTTCSEE
T ss_pred             CCCCCCCChh--H-----------------------------------cCCCCCCEEECCCCcCCCChh-hccCCCCCEe
Confidence            9999976541  1                                   123689999999999998875 7889999999


Q ss_pred             eCCCCc
Q 014200          386 DLSRNS  391 (429)
Q Consensus       386 ~ls~n~  391 (429)
                      +|++|.
T Consensus       379 ~L~~Na  384 (384)
T d2omza2         379 GLNDQA  384 (384)
T ss_dssp             ECCCEE
T ss_pred             eCCCCc
Confidence            999983

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.7e-24  Score=194.71  Aligned_cols=242  Identities=22%  Similarity=0.324  Sum_probs=190.8

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCc-chhh
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSEL-PAAI   87 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~-~~~l   87 (429)
                      ..+.+|+++.+++++|..++.               ++++|++++|+++.+++ +|.++++|++|++++|.+..+ |.+|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~~---------------~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLPP---------------DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCCT---------------TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             cCCEEEecCCCCCccCCCCCC---------------CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh
Confidence            457789999999999987643               48999999999999986 689999999999999998887 4578


Q ss_pred             hCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccc---cCCccccccCCCc
Q 014200           88 GELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT---SLPEDLADCSKMS  163 (429)
Q Consensus        88 ~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~---~~~~~l~~~~~L~  163 (429)
                      .++++|++|++++|+++.+|..+  ...++.+....+.+..++. .+.....+..+....+...   ..+..+..+++|+
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~  153 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  153 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hCCCccCEecccCCccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccC
Confidence            99999999999999999887653  4678889998888887754 3455667778887776544   2344577778888


Q ss_pred             EEEccCCcccccChhhhhcccccceeecCCccCCc-CCccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCC
Q 014200          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA  241 (429)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~  241 (429)
                      .+++++|.+..++..   ..++++++++++|.... .+..+..++.++.|++++|.+..+ +..+.++++|++|++++|.
T Consensus       154 ~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~  230 (305)
T d1xkua_         154 YIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK  230 (305)
T ss_dssp             EEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred             ccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc
Confidence            899888887776543   35678888888887754 355677778888888888888766 4567788888888888888


Q ss_pred             CCccChhhcCCCCCCEEECCCCcCccccch
Q 014200          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVE  271 (429)
Q Consensus       242 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  271 (429)
                      ++.+|.++..+++|+.|++++|+++.++..
T Consensus       231 L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~  260 (305)
T d1xkua_         231 LVKVPGGLADHKYIQVVYLHNNNISAIGSN  260 (305)
T ss_dssp             CSSCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             ccccccccccccCCCEEECCCCccCccChh
Confidence            888888888888888888888888776543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.3e-23  Score=188.51  Aligned_cols=247  Identities=24%  Similarity=0.335  Sum_probs=164.4

Q ss_pred             CccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccC-CccccCCCCcCEEecCC
Q 014200           46 DLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKFDCSS  123 (429)
Q Consensus        46 ~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L~l~~  123 (429)
                      ..+.++-++.+++.+|..+.  +++++|++++|.++.+|+ +|.++++|++|++++|.+..+ |..+.++++|+++++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            35777877777888887653  578888888888888875 678888888888888877766 44577788888888888


Q ss_pred             CCCCcCCccccCCCCCCEEEcCCCccccCCcc-ccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcc
Q 014200          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPED-LADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPET  202 (429)
Q Consensus       124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  202 (429)
                      |++..+|...  ...+..+...++.+..++.. +.....+..++...+.....                     ...+..
T Consensus        89 n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~---------------------~~~~~~  145 (305)
T d1xkua_          89 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------GIENGA  145 (305)
T ss_dssp             SCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG---------------------GBCTTG
T ss_pred             CccCcCccch--hhhhhhhhccccchhhhhhhhhhcccccccccccccccccc---------------------CCCccc
Confidence            8777776533  23566666666655544322 23333444444433321110                     111233


Q ss_pred             ccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhhc--cccCE
Q 014200          203 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSV  279 (429)
Q Consensus       203 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~  279 (429)
                      +..+++|+.+++++|.+..++..+  ++++++|++++|..+.. +..+..++.++.|++++|.+.+++...+.  .+|++
T Consensus       146 ~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         146 FQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee
Confidence            455566777777777766665432  56777778877776643 55677777888888888877766554332  34788


Q ss_pred             EEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccC
Q 014200          280 LDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN  319 (429)
Q Consensus       280 l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~  319 (429)
                      |++++|+++.+|..+.++++|+.|++++|+|+.++...|.
T Consensus       224 L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             EECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             eecccccccccccccccccCCCEEECCCCccCccChhhcc
Confidence            8888888888877788888888888888888777655543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.90  E-value=9.8e-24  Score=191.68  Aligned_cols=246  Identities=24%  Similarity=0.355  Sum_probs=150.9

Q ss_pred             cCEEecCCCCCC---cCCccccCCCCCCEEEcCC-Cccc-cCCccccccCCCcEEEccCCcccccChhhhhcccccceee
Q 014200          116 LVKFDCSSNQLK---ELPSSLGRCLNLSDFKASN-NCIT-SLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELI  190 (429)
Q Consensus       116 L~~L~l~~~~l~---~~~~~~~~~~~L~~L~l~~-~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  190 (429)
                      ++.|+++++.+.   .+|..+..+++|++|++++ |.+. .+|..+.++++|++|++++|.+.......+..        
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~--------  123 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ--------  123 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG--------
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccc--------
Confidence            444444444433   2344444555555555543 3333 44555555555555555555544433333333        


Q ss_pred             cCCccCCcCCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCC-CEEECCCCcCcc
Q 014200          191 ASKNLLNGMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKL-GTLDLHSNQLKE  267 (429)
Q Consensus       191 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L-~~L~l~~n~l~~  267 (429)
                                     +.+|+.++++.|.+. .+|..+..++.++.+++++|.++ .+|..+..+..+ +.+++++|.+++
T Consensus       124 ---------------~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         124 ---------------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             ---------------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             ---------------hhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccc
Confidence                           334444444444333 23444555555555555555555 445555555443 566666666654


Q ss_pred             ccchh-hccccCEEEccCCCCCC-CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCCh
Q 014200          268 YCVEA-CQLRLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK  345 (429)
Q Consensus       268 ~~~~~-~~~~L~~l~l~~n~l~~-l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (429)
                      ..... .......+++..+...+ ++..+..+++++.++++++.+...+...                            
T Consensus       189 ~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~----------------------------  240 (313)
T d1ogqa_         189 KIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----------------------------  240 (313)
T ss_dssp             ECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGC----------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc----------------------------
Confidence            43322 22335567777766655 5666777888888888888775432211                            


Q ss_pred             hhHHhhhhccccccccccccCCccc-cCChhhhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccc---c
Q 014200          346 EDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESC---I  420 (429)
Q Consensus       346 ~~~~~~~~~~~~~L~~l~l~~~~i~-~~~~~~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~---i  420 (429)
                              ...++|+.|++++|+++ .+|+.+..+++|++|||++|++++ +|+ ++++++|+.++  +++|+..+   +
T Consensus       241 --------~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~--l~~N~~l~g~pl  309 (313)
T d1ogqa_         241 --------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSA--YANNKCLCGSPL  309 (313)
T ss_dssp             --------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGG--TCSSSEEESTTS
T ss_pred             --------ccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHH--hCCCccccCCCC
Confidence                    11257889999999998 899999999999999999999997 886 68899999999  99998544   7


Q ss_pred             ccc
Q 014200          421 SGC  423 (429)
Q Consensus       421 ~~~  423 (429)
                      |+|
T Consensus       310 p~c  312 (313)
T d1ogqa_         310 PAC  312 (313)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            777

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.90  E-value=3.1e-21  Score=177.76  Aligned_cols=304  Identities=25%  Similarity=0.331  Sum_probs=161.3

Q ss_pred             hhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhh
Q 014200            9 RTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIG   88 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~   88 (429)
                      .++++|||++++++++|+.                .++|++|++++|+++.+|+.   ..+|+.|++++|.++.++..  
T Consensus        38 ~~l~~LdLs~~~L~~lp~~----------------~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l--   96 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL----------------PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL--   96 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC----------------CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC--
T ss_pred             cCCCEEEeCCCCCCCCCCC----------------CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh--
Confidence            3567777777777777642                24577777777777777643   34677777777776655431  


Q ss_pred             CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEcc
Q 014200           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVE  168 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~  168 (429)
                       .+.|++|++++|.+..+|. ++.+++|++++++++.+...+..   ...+..+.+..+..... ..+..++.++.+++.
T Consensus        97 -p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~-~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_          97 -PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYAD  170 (353)
T ss_dssp             -CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECC
T ss_pred             -ccccccccccccccccccc-hhhhccceeeccccccccccccc---cccccchhhcccccccc-ccccccccceecccc
Confidence             1357777777777776664 45667777777777666554432   23455555544433322 234555666667666


Q ss_pred             CCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChh
Q 014200          169 GNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE  248 (429)
Q Consensus       169 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~  248 (429)
                      ++.....+..    ....+.+......+..++. ...++.++.+.++++....++.   ...++..+.+..+.+...+. 
T Consensus       171 ~n~~~~~~~~----~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~---~~~~l~~~~~~~~~~~~~~~-  241 (353)
T d1jl5a_         171 NNSLKKLPDL----PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLPE-  241 (353)
T ss_dssp             SSCCSSCCCC----CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCCC-
T ss_pred             cccccccccc----ccccccccccccccccccc-cccccccccccccccccccccc---cccccccccccccccccccc-
Confidence            6654433221    1122233333333333332 3455666666666655544432   23345555555555543332 


Q ss_pred             hcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHH
Q 014200          249 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY  328 (429)
Q Consensus       249 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~  328 (429)
                        ..+.+...++..+.+..+...  .......++..+.+.+++.   .+++|++|++++|.+++++..            
T Consensus       242 --~~~~l~~~~~~~~~~~~l~~l--~~~~~~~~~~~~~~~~~~~---~~~~L~~L~Ls~N~l~~lp~~------------  302 (353)
T d1jl5a_         242 --LPQSLTFLDVSENIFSGLSEL--PPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL------------  302 (353)
T ss_dssp             --CCTTCCEEECCSSCCSEESCC--CTTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC------------
T ss_pred             --ccccccccccccccccccccc--cchhcccccccCccccccc---cCCCCCEEECCCCccCccccc------------
Confidence              223455555555544433221  1123444554444443322   345666666666666554321            


Q ss_pred             HHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCChhhhccCCCcEEeCCCCccccCCh
Q 014200          329 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP  397 (429)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~  397 (429)
                                                 .++|+.|++++|+|+.+|+.   +++|++|++++|+++.+|+
T Consensus       303 ---------------------------~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         303 ---------------------------PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             ---------------------------CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCC
T ss_pred             ---------------------------cCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCCCCc
Confidence                                       12556666666666665542   3456666666666665554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.89  E-value=2.1e-20  Score=172.14  Aligned_cols=304  Identities=27%  Similarity=0.313  Sum_probs=202.2

Q ss_pred             CCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCC
Q 014200           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~  124 (429)
                      .++++|++++++++.+|+.   .++|++|++++|.++.+|+.   ..+|+.|++++|.+..+++.   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            4688999999999988853   56899999999999888864   45788888998888776542   246889999998


Q ss_pred             CCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcccc
Q 014200          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG  204 (429)
Q Consensus       125 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  204 (429)
                      .+..+|. +..+++|++++++++.+...+..   ...+..+.+..+......  .+..++.++.+.+.++.....+... 
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~--~l~~l~~l~~L~l~~n~~~~~~~~~-  181 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLP-  181 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCC-
T ss_pred             ccccccc-hhhhccceeeccccccccccccc---cccccchhhccccccccc--cccccccceeccccccccccccccc-
Confidence            8888875 56788899999888877755443   345566666555433322  2455667777777777665544322 


Q ss_pred             CCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccC
Q 014200          205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN  284 (429)
Q Consensus       205 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~  284 (429)
                        ...+.+....+.+..++ .+..++.++.+++++|....++.   ...++..+.+.++.+...+..  ...+...++..
T Consensus       182 --~~~~~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~---~~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~~~  253 (353)
T d1jl5a_         182 --LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSE  253 (353)
T ss_dssp             --TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCS
T ss_pred             --ccccccccccccccccc-ccccccccccccccccccccccc---ccccccccccccccccccccc--ccccccccccc
Confidence              22344555544444443 24556677777777766655443   234566666666665543321  22355555555


Q ss_pred             CCCCCCCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccc
Q 014200          285 NSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSL  364 (429)
Q Consensus       285 n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l  364 (429)
                      +.+..+...   .......++..+.+..++                                       ..+++|++|++
T Consensus       254 ~~~~~l~~l---~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~L~~L~L  291 (353)
T d1jl5a_         254 NIFSGLSEL---PPNLYYLNASSNEIRSLC---------------------------------------DLPPSLEELNV  291 (353)
T ss_dssp             SCCSEESCC---CTTCCEEECCSSCCSEEC---------------------------------------CCCTTCCEEEC
T ss_pred             ccccccccc---cchhcccccccCcccccc---------------------------------------ccCCCCCEEEC
Confidence            444332211   112334445555443322                                       12368999999


Q ss_pred             cCCccccCChhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccc
Q 014200          365 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISG  422 (429)
Q Consensus       365 ~~~~i~~~~~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~  422 (429)
                      ++|+++++|..   +++|+.|++++|+|+++|+.   +++|++|+  +++|+++.+|+
T Consensus       292 s~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~--L~~N~L~~lp~  341 (353)
T d1jl5a_         292 SNNKLIELPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLH--VEYNPLREFPD  341 (353)
T ss_dssp             CSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEE--CCSSCCSSCCC
T ss_pred             CCCccCccccc---cCCCCEEECCCCcCCccccc---cCCCCEEE--CcCCcCCCCCc
Confidence            99999999863   67899999999999999864   46899999  99999999885

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-22  Score=177.01  Aligned_cols=199  Identities=28%  Similarity=0.398  Sum_probs=131.7

Q ss_pred             ceeecCCccCCcCCccccCCccCCeEeccCCcCccCC-ccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECCCCcC
Q 014200          187 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL  265 (429)
Q Consensus       187 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~~n~l  265 (429)
                      .+++.+++.++.+|..+.  +.++.|++++|.++.++ .+|..+++|++|++++|.++.++ .++.+++|+.|++++|.+
T Consensus        13 ~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCC
T ss_pred             eEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc-cccccccccccccccccc
Confidence            334444555555554332  34666666666666554 34566666666666666666554 235566666666666666


Q ss_pred             ccccchhhc-cccCEEEccCCCCCCC-CccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccC
Q 014200          266 KEYCVEACQ-LRLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEAST  343 (429)
Q Consensus       266 ~~~~~~~~~-~~L~~l~l~~n~l~~l-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (429)
                      +..+..... .+|+.+++++|.+..+ +..+..+++++.+++++|.++.++...+.+.                      
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l----------------------  147 (266)
T d1p9ag_          90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT----------------------  147 (266)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC----------------------
T ss_pred             cccccccccccccccccccccccceeeccccccccccccccccccccceecccccccc----------------------
Confidence            654443322 2366777777666664 3345667778888888888777665544432                      


Q ss_pred             ChhhHHhhhhccccccccccccCCccccCChh-hhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccc
Q 014200          344 TKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISG  422 (429)
Q Consensus       344 ~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~~~-~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~  422 (429)
                                   ++++.+++++|+++.++.. +..+++|++|+|++|+|+.+|+.+..+++|+.|+  |++|++.|  +
T Consensus       148 -------------~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~--L~~Np~~C--d  210 (266)
T d1p9ag_         148 -------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAF--LHGNPWLC--N  210 (266)
T ss_dssp             -------------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEE--CCSCCBCC--S
T ss_pred             -------------ccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEE--ecCCCCCC--C
Confidence                         4678888888888876644 5578889999999999888888888888999999  99999888  7


Q ss_pred             ccccc
Q 014200          423 CYLYW  427 (429)
Q Consensus       423 ~~~~~  427 (429)
                      |-+.|
T Consensus       211 C~~~~  215 (266)
T d1p9ag_         211 CEILY  215 (266)
T ss_dssp             GGGHH
T ss_pred             cchHH
Confidence            76665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=1e-22  Score=184.93  Aligned_cols=220  Identities=26%  Similarity=0.358  Sum_probs=166.7

Q ss_pred             CccEEEcCCCCCC---ccchhccCCCCCCEEECCC-CCCC-CcchhhhCCCCCcEeecCCCcCccC-CccccCCCCcCEE
Q 014200           46 DLQKLILAHNNIE---KLKEDLRNLPLLTVLNVSH-NKLS-ELPAAIGELHMLKSLDVSFNSIMKI-PDEIGSATALVKF  119 (429)
Q Consensus        46 ~L~~L~l~~~~i~---~l~~~~~~~~~L~~L~l~~-~~i~-~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~~~~L~~L  119 (429)
                      +++.|+++++.+.   .+|..+.++++|++|++++ |.+. .+|+.+.++++|++|++++|.+..+ +..+..+.+|+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            5888999988777   4778889999999999986 5655 7888899999999999999888754 4557788889999


Q ss_pred             ecCCCCCC-cCCccccCCCCCCEEEcCCCccc-cCCccccccCCC-cEEEccCCcccccChhhhhcccccceeecCCccC
Q 014200          120 DCSSNQLK-ELPSSLGRCLNLSDFKASNNCIT-SLPEDLADCSKM-SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL  196 (429)
Q Consensus       120 ~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  196 (429)
                      +++.|.+. .+|..+..++.++++++++|.+. .+|..+..+..+ +.+++++|.+....+..+..+.. ..+++..+..
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence            99888765 56778888889999999888877 677777777665 77888888877665554544433 3566666655


Q ss_pred             C-cCCccccCCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCC-ccChhhcCCCCCCEEECCCCcCc
Q 014200          197 N-GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLK  266 (429)
Q Consensus       197 ~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~~~~~L~~L~l~~n~l~  266 (429)
                      . .+|..+..+++++.+++.++.+...+..+..+++++.|++++|.++ .+|..+..+++|++|++++|.++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            3 3455666777788888887777655556677777888888888777 67777777777777777777766

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.3e-21  Score=173.01  Aligned_cols=193  Identities=28%  Similarity=0.326  Sum_probs=115.5

Q ss_pred             hcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcchhhh
Q 014200           10 TSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPAAIG   88 (429)
Q Consensus        10 ~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~~l~   88 (429)
                      .+.++|+++++++++|+.++               +++++|+|++|.++.++. .|.++++|++|++++|.++.++. +.
T Consensus        11 ~~~~v~C~~~~L~~iP~~lp---------------~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~   74 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDLP---------------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DG   74 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCCC---------------TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CS
T ss_pred             CCeEEEccCCCCCeeCcCcC---------------cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cc
Confidence            44556777777777776553               246777777777776664 46777777777777777766543 45


Q ss_pred             CCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccccCCc-cccccCCCcEEE
Q 014200           89 ELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCITSLPE-DLADCSKMSKLD  166 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~~L~~L~  166 (429)
                      .+++|++|++++|++..++..+.++++|++++++++.+..++. .+..+.+++++.+.+|.+..++. .+..+++++.++
T Consensus        75 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~  154 (266)
T d1p9ag_          75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS  154 (266)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcc
Confidence            6777777777777776666666667777777777666665432 34455566666666665554432 234455556666


Q ss_pred             ccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCc
Q 014200          167 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR  218 (429)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  218 (429)
                      +++|.++.++...+..+++|++|++++|+++.+|..+..+++|+.|++++|+
T Consensus       155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence            6555555555444444455555555555554444444444444444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-21  Score=173.77  Aligned_cols=238  Identities=25%  Similarity=0.318  Sum_probs=137.2

Q ss_pred             eeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCCcch-hhhCCC
Q 014200           14 LNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSELPA-AIGELH   91 (429)
Q Consensus        14 L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~   91 (429)
                      +++++++++++|..++.               ++++|+|++|+++.++. .|.++++|+.|+++++.+..++. .+..++
T Consensus        16 v~c~~~~L~~iP~~ip~---------------~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~   80 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIPA---------------ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA   80 (284)
T ss_dssp             EECCSSCCSSCCTTCCT---------------TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             EEcCCCCCCccCCCCCC---------------CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc
Confidence            45555556666654432               25666666666665554 35666666666666666554433 444555


Q ss_pred             CCcEeecCC-CcCccC-CccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccC
Q 014200           92 MLKSLDVSF-NSIMKI-PDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEG  169 (429)
Q Consensus        92 ~L~~L~l~~-~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~  169 (429)
                      .++.+.... +.+..+ +..+.++++|+++++++|.+..++.                      ..+....+|+.+++++
T Consensus        81 ~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~----------------------~~~~~~~~L~~l~l~~  138 (284)
T d1ozna_          81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP----------------------GLFRGLAALQYLYLQD  138 (284)
T ss_dssp             TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT----------------------TTTTTCTTCCEEECCS
T ss_pred             cccccccccccccccccchhhcccccCCEEecCCcccccccc----------------------cccchhcccchhhhcc
Confidence            555555432 244444 2334555555555555555443322                      2233344555555555


Q ss_pred             CcccccChhhhhcccccceeecCCccCCcC-CccccCCccCCeEeccCCcCccC-CccccccCCCcEEEcCCCCCCccC-
Q 014200          170 NKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALP-  246 (429)
Q Consensus       170 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~n~i~~~~-  246 (429)
                      |.++.++...+..++.+++|++++|.++.+ +..+..+++|+.+++++|.+..+ |..|..++++++|++++|.++.++ 
T Consensus       139 N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             ccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc
Confidence            555555444455555555566655555544 23456677777788887777755 567788888888888888888764 


Q ss_pred             hhhcCCCCCCEEECCCCcCccccchhhc-cccCEEEccCCCCC
Q 014200          247 AELGKLSKLGTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLS  288 (429)
Q Consensus       247 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~L~~l~l~~n~l~  288 (429)
                      .+++.+++|+.+++++|.+..-+..... ..++.+....+.+.
T Consensus       219 ~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~  261 (284)
T d1ozna_         219 EALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVP  261 (284)
T ss_dssp             HHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCB
T ss_pred             cccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceE
Confidence            4678888899999988887754332211 12554444444443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.1e-21  Score=169.64  Aligned_cols=223  Identities=22%  Similarity=0.322  Sum_probs=123.7

Q ss_pred             EEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCcc
Q 014200          142 FKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS  221 (429)
Q Consensus       142 L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~  221 (429)
                      +.+++..++.+|..+.  .++++|++++|.++.++...+.+++.|++++++++.+..++.                    
T Consensus        16 v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~--------------------   73 (284)
T d1ozna_          16 TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--------------------   73 (284)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT--------------------
T ss_pred             EEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc--------------------
Confidence            3444444444444332  345555555555555554444444444444444444433221                    


Q ss_pred             CCccccccCCCcEEEcC-CCCCCcc-ChhhcCCCCCCEEECCCCcCccccchhhc--cccCEEEccCCCCCCCC-ccccC
Q 014200          222 IPSSISGCCSLAEFYMG-NNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQ--LRLSVLDLSNNSLSGLP-PEIGK  296 (429)
Q Consensus       222 ~~~~~~~~~~L~~L~l~-~n~i~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~L~~l~l~~n~l~~l~-~~l~~  296 (429)
                        ..+...+.++++... .+.++.+ +..++.+++|++|++++|.+..+......  ..|+.+++++|++++++ ..+..
T Consensus        74 --~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~  151 (284)
T d1ozna_          74 --AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD  151 (284)
T ss_dssp             --TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             --ccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc
Confidence              222333444444332 2233333 33345555555555555555443332222  22566666666666653 34566


Q ss_pred             CCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccC-Chh
Q 014200          297 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSE  375 (429)
Q Consensus       297 ~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~-~~~  375 (429)
                      +++|+.|++++|.++.++...|.+.                                   ++|+.+++++|+++.+ |..
T Consensus       152 ~~~L~~L~l~~N~l~~l~~~~f~~l-----------------------------------~~L~~l~l~~N~l~~i~~~~  196 (284)
T d1ozna_         152 LGNLTHLFLHGNRISSVPERAFRGL-----------------------------------HSLDRLLLHQNRVAHVHPHA  196 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTC-----------------------------------TTCCEEECCSSCCCEECTTT
T ss_pred             ccchhhcccccCcccccchhhhccc-----------------------------------cccchhhhhhccccccChhH
Confidence            6677777777777766655554432                                   3667777777777643 566


Q ss_pred             hhccCCCcEEeCCCCcccc-CChhhcccccceeeccccCCCcccccccccccc
Q 014200          376 IWEAGEITKLDLSRNSIQE-LPPELSSCASLQVKFSDLVTNKESCISGCYLYW  427 (429)
Q Consensus       376 ~~~~~~L~~L~ls~n~i~~-~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~  427 (429)
                      +..+++|++||+++|++++ .+..++.+++|++|+  +++|+++|  +|-+.|
T Consensus       197 f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~--l~~N~l~C--~C~~~~  245 (284)
T d1ozna_         197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR--LNDNPWVC--DCRARP  245 (284)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEE--CCSSCEEC--SGGGHH
T ss_pred             hhhhhhcccccccccccccccccccccccccCEEE--ecCCCCCC--CccchH
Confidence            6777888888888888877 445677788888888  88888877  565655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-21  Score=187.57  Aligned_cols=368  Identities=18%  Similarity=0.182  Sum_probs=243.7

Q ss_pred             hhcCeeeccCCCCccCC-hhhhhhhccccCCCcccccCCccEEEcCCCCCC-----ccchhccCCCCCCEEECCCCCCCC
Q 014200            9 RTSGSLNLSNRSLRDVP-NEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE   82 (429)
Q Consensus         9 ~~l~~L~l~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~i~~   82 (429)
                      .+|+.||+++++++... ..+++.            ++++++|+|++|.++     .+...+..+++|+.|++++|.++.
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~------------l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~   69 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPL------------LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   69 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHH------------HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHh------------CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCCh
Confidence            46899999999987532 222333            677999999999887     345567899999999999998863


Q ss_pred             c-----chhhh-CCCCCcEeecCCCcCcc-----CCccccCCCCcCEEecCCCCCCcC-----Ccccc-CCCCCCEEEcC
Q 014200           83 L-----PAAIG-ELHMLKSLDVSFNSIMK-----IPDEIGSATALVKFDCSSNQLKEL-----PSSLG-RCLNLSDFKAS  145 (429)
Q Consensus        83 ~-----~~~l~-~l~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~-~~~~L~~L~l~  145 (429)
                      .     ...+. ..++|++|++++|.++.     ++..+..+++|++|++++|.+...     ...+. ...........
T Consensus        70 ~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~  149 (460)
T d1z7xw1          70 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLE  149 (460)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred             HHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccc
Confidence            2     22232 23579999999998873     345677899999999999987631     11111 12233344443


Q ss_pred             CCcccc-----CCccccccCCCcEEEccCCcccccChhhh-----hcccccceeecCCccCCcC-----CccccCCccCC
Q 014200          146 NNCITS-----LPEDLADCSKMSKLDVEGNKLTVLSNNLI-----ASWTMLTELIASKNLLNGM-----PETIGSLSRLI  210 (429)
Q Consensus       146 ~~~~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~-----~~~~~~~~~L~  210 (429)
                      ......     +...+.....++.++++++..........     ........+....+.....     ...+...+.++
T Consensus       150 ~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~  229 (460)
T d1z7xw1         150 YCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR  229 (460)
T ss_dssp             TSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCC
T ss_pred             ccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence            333221     11234556788889988776543221111     1123445566666554321     12344567788


Q ss_pred             eEeccCCcCcc------CCccccccCCCcEEEcCCCCCCc-----cChhhcCCCCCCEEECCCCcCccccch-----h--
Q 014200          211 RLDLHQNRILS------IPSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQLKEYCVE-----A--  272 (429)
Q Consensus       211 ~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~--  272 (429)
                      .+.+.++.+..      ..........++.+++++|.+..     ....+...+.++.+++++|.+......     .  
T Consensus       230 ~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~  309 (460)
T d1z7xw1         230 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE  309 (460)
T ss_dssp             EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTS
T ss_pred             ccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccc
Confidence            99999887652      12334567789999999998872     234467788999999999988632211     1  


Q ss_pred             hccccCEEEccCCCCCC-----CCccccCCCCCCEEEccCCCCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhh
Q 014200          273 CQLRLSVLDLSNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED  347 (429)
Q Consensus       273 ~~~~L~~l~l~~n~l~~-----l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (429)
                      ....++.+++++|.++.     +...+..+++|++|++++|.+++.+           +..+                  
T Consensus       310 ~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g-----------~~~l------------------  360 (460)
T d1z7xw1         310 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG-----------VREL------------------  360 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH-----------HHHH------------------
T ss_pred             cccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcc-----------cchh------------------
Confidence            12359999999998876     2234566789999999999874311           1111                  


Q ss_pred             HHhhhhccccccccccccCCccc-----cCChhhhccCCCcEEeCCCCcccc-----CChhhc-ccccceeeccccCCCc
Q 014200          348 LITMATRLSVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE-----LPPELS-SCASLQVKFSDLVTNK  416 (429)
Q Consensus       348 ~~~~~~~~~~~L~~l~l~~~~i~-----~~~~~~~~~~~L~~L~ls~n~i~~-----~~~~l~-~l~~L~~L~~~l~~n~  416 (429)
                       ........+.|++|++++|.|+     .+++.+..+++|++|||++|+|++     +.+.+. +..+|+.|+  +.+|.
T Consensus       361 -~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~--l~~~~  437 (460)
T d1z7xw1         361 -CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV--LYDIY  437 (460)
T ss_dssp             -HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE--CTTCC
T ss_pred             -hhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEE--CCCCC
Confidence             1111122357899999999998     356677789999999999999985     333343 344799999  99999


Q ss_pred             cccc
Q 014200          417 ESCI  420 (429)
Q Consensus       417 i~~i  420 (429)
                      +...
T Consensus       438 ~~~~  441 (460)
T d1z7xw1         438 WSEE  441 (460)
T ss_dssp             CCHH
T ss_pred             CCHH
Confidence            8863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=6.6e-19  Score=151.60  Aligned_cols=185  Identities=22%  Similarity=0.330  Sum_probs=93.4

Q ss_pred             CCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCC
Q 014200           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~  124 (429)
                      .+|++|++.+++++.++ .+.++++|++|++++|.+..++ .+..+++|+++++++|.++.++ .+..+++|+++.++++
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccc-cccccccccccccccccccccc-cccccccccccccccc
Confidence            34555555555555542 3455555555555555554442 2445555555555555444432 2344455555555444


Q ss_pred             CCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcccc
Q 014200          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG  204 (429)
Q Consensus       125 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  204 (429)
                      ....+ ..+..                       .+.++.+.++.+.+.....  +..+++++++++.+|.+...+ .+.
T Consensus       118 ~~~~~-~~~~~-----------------------~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-~l~  170 (227)
T d1h6ua2         118 QITDV-TPLAG-----------------------LSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-PLA  170 (227)
T ss_dssp             CCCCC-GGGTT-----------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGT
T ss_pred             ccccc-chhcc-----------------------ccchhhhhchhhhhchhhh--hccccccccccccccccccch-hhc
Confidence            43332 12223                       3444444444443332221  334444555555444443332 244


Q ss_pred             CCccCCeEeccCCcCccCCccccccCCCcEEEcCCCCCCccChhhcCCCCCCEEECC
Q 014200          205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH  261 (429)
Q Consensus       205 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~~L~~L~l~  261 (429)
                      .+++|+.|++++|.++.++. ++.+++|++|++++|.++++++ ++.+++|+.|+++
T Consensus       171 ~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         171 NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             ccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            55666666666666655432 5566666666666666666643 5666666666664

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.6e-18  Score=147.82  Aligned_cols=189  Identities=25%  Similarity=0.329  Sum_probs=145.2

Q ss_pred             HHHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcc
Q 014200            5 LKAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELP   84 (429)
Q Consensus         5 ~~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~   84 (429)
                      +..+++|+.|+++++++++++.  ++.            +++|++|++++|.+..+. .+..+++++.+++++|.++.++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~~--l~~------------l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIEG--VQY------------LNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCTT--GGG------------CTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSCCG
T ss_pred             HHHcCCcCEEECCCCCCCcchh--Hhc------------CCCCcEeecCCceeeccc-cccccccccccccccccccccc
Confidence            4567899999999999988743  333            788999999999999876 4899999999999999998874


Q ss_pred             hhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcE
Q 014200           85 AAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSK  164 (429)
Q Consensus        85 ~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~  164 (429)
                       .+.++++|++++++++....++ .+...+.++.+.++++.+... ..+..+++|+++.+++|.+...+ .+..+++|+.
T Consensus       102 -~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~-~l~~l~~L~~  177 (227)
T d1h6ua2         102 -AIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT-PLANLSKLTT  177 (227)
T ss_dssp             -GGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCE
T ss_pred             -cccccccccccccccccccccc-hhccccchhhhhchhhhhchh-hhhccccccccccccccccccch-hhccccccee
Confidence             5789999999999998776653 366788999999988877754 34567778888888888776543 3667788888


Q ss_pred             EEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEecc
Q 014200          165 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLH  215 (429)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~  215 (429)
                      |++++|.+..++.  +..+++|++|++++|+++.++. +..+++|+.|+++
T Consensus       178 L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~ls  225 (227)
T d1h6ua2         178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLT  225 (227)
T ss_dssp             EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEE
T ss_pred             cccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEee
Confidence            8888887776543  5566666666666666665542 5566666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-19  Score=173.32  Aligned_cols=341  Identities=20%  Similarity=0.190  Sum_probs=223.1

Q ss_pred             CccEEEcCCCCCCc--cchhccCCCCCCEEECCCCCCC-----CcchhhhCCCCCcEeecCCCcCcc-----CCcccc-C
Q 014200           46 DLQKLILAHNNIEK--LKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMK-----IPDEIG-S  112 (429)
Q Consensus        46 ~L~~L~l~~~~i~~--l~~~~~~~~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~i~~-----l~~~~~-~  112 (429)
                      +|+.|++++++++.  +...+..++++++|++++|.++     .++.+++.+++|++|++++|.++.     ++..+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            58999999999984  3445677899999999999987     335567899999999999998862     233333 2


Q ss_pred             CCCcCEEecCCCCCCc-----CCccccCCCCCCEEEcCCCccccC-----Ccccc-ccCCCcEEEccCCcccccCh----
Q 014200          113 ATALVKFDCSSNQLKE-----LPSSLGRCLNLSDFKASNNCITSL-----PEDLA-DCSKMSKLDVEGNKLTVLSN----  177 (429)
Q Consensus       113 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~l~-~~~~L~~L~l~~~~~~~~~~----  177 (429)
                      ..+|++|++++|+++.     ++..+..+++|++|++++|.+...     ...+. ....................    
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  162 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence            4579999999998873     345677889999999999987631     11111 12233344443333222111    


Q ss_pred             hhhhcccccceeecCCccCCc-----CCccc-cCCccCCeEeccCCcCccC-----CccccccCCCcEEEcCCCCCCc--
Q 014200          178 NLIASWTMLTELIASKNLLNG-----MPETI-GSLSRLIRLDLHQNRILSI-----PSSISGCCSLAEFYMGNNALSA--  244 (429)
Q Consensus       178 ~~~~~~~~L~~L~l~~~~l~~-----~~~~~-~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~n~i~~--  244 (429)
                      ..+.....++.+.++.+....     ....+ ........+.+..+.+...     ...+...+.++.+.++++.+..  
T Consensus       163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~  242 (460)
T d1z7xw1         163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG  242 (460)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence            112334566777776665421     11111 1223455677777655421     2334567788889888887652  


Q ss_pred             ----cChhhcCCCCCCEEECCCCcCccccch------hhccccCEEEccCCCCCC-----CCccc-cCCCCCCEEEccCC
Q 014200          245 ----LPAELGKLSKLGTLDLHSNQLKEYCVE------ACQLRLSVLDLSNNSLSG-----LPPEI-GKMTTLRKLLLTGN  308 (429)
Q Consensus       245 ----~~~~~~~~~~L~~L~l~~n~l~~~~~~------~~~~~L~~l~l~~n~l~~-----l~~~l-~~~~~L~~L~l~~~  308 (429)
                          ..........++.+++++|.+......      .....++.+++++|.+++     +...+ .....|+.+++++|
T Consensus       243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~  322 (460)
T d1z7xw1         243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC  322 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence                123345667899999999887643221      123348888998888764     11112 23457888888888


Q ss_pred             CCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccc-----cCChhhh-ccCCC
Q 014200          309 PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-----AIPSEIW-EAGEI  382 (429)
Q Consensus       309 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~-----~~~~~~~-~~~~L  382 (429)
                      .+....        ...                       ++......++|++|+|++|+++     .+++.+. ..+.|
T Consensus       323 ~l~~~~--------~~~-----------------------l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L  371 (460)
T d1z7xw1         323 SFTAAC--------CSH-----------------------FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVL  371 (460)
T ss_dssp             CCBGGG--------HHH-----------------------HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCC
T ss_pred             chhhhh--------hhh-----------------------cccccccccchhhhheeeecccCcccchhhhhhhcccCCC
Confidence            764321        111                       1122233468999999999987     3445554 46789


Q ss_pred             cEEeCCCCcccc-----CChhhcccccceeeccccCCCcccc
Q 014200          383 TKLDLSRNSIQE-----LPPELSSCASLQVKFSDLVTNKESC  419 (429)
Q Consensus       383 ~~L~ls~n~i~~-----~~~~l~~l~~L~~L~~~l~~n~i~~  419 (429)
                      +.|+|++|+|++     +++.+..+++|++|+  |++|+|++
T Consensus       372 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~--Ls~N~i~~  411 (460)
T d1z7xw1         372 RVLWLADCDVSDSSCSSLAATLLANHSLRELD--LSNNCLGD  411 (460)
T ss_dssp             CEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE--CCSSSCCH
T ss_pred             CEEECCCCCCChHHHHHHHHHHhcCCCCCEEE--CCCCcCCH
Confidence            999999999985     667788899999999  99999986

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.4e-17  Score=139.87  Aligned_cols=149  Identities=23%  Similarity=0.340  Sum_probs=87.2

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCC
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSS  123 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~  123 (429)
                      +.++++|+++++.++.++ .++.+++|++|++++|.++.++. ++++++|++|++++|.+..++. +.++++|+++++++
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~  115 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  115 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCS
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc-ccCCcccccccccccccccccc-cccccccccccccc
Confidence            345677777777766654 45666777777777776666543 6667777777777666665543 55666677776666


Q ss_pred             CCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcC
Q 014200          124 NQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM  199 (429)
Q Consensus       124 ~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  199 (429)
                      +....+ ..+..+++|+.+++++|.+..++ .+..+++++.+++.+|.++.+++  +.++++|++|++++|+++.+
T Consensus       116 ~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~--l~~l~~L~~L~ls~N~i~~i  187 (199)
T d2omxa2         116 NQITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI  187 (199)
T ss_dssp             SCCCCC-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred             cccccc-cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc--ccCCCCCCEEECCCCCCCCC
Confidence            665544 23455566666666666555443 34555566666665555554432  34444444444444444433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=4.2e-17  Score=138.15  Aligned_cols=163  Identities=21%  Similarity=0.343  Sum_probs=84.0

Q ss_pred             CCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCC
Q 014200           45 VDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (429)
Q Consensus        45 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~  124 (429)
                      .++++|+++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|+.+++.++
T Consensus        46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS
T ss_pred             cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-cccccccccccccccc
Confidence            34566666665555544 3455566666666666555543 2445556666666655555544 2455555555555555


Q ss_pred             CCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCcccccChhhhhcccccceeecCCccCCcCCcccc
Q 014200          125 QLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG  204 (429)
Q Consensus       125 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  204 (429)
                      .+..+ ..+..+++++.+++++|.++..+ .+..+++|+.+++++|.                        ++.++. +.
T Consensus       123 ~~~~~-~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~------------------------l~~i~~-l~  175 (210)
T d1h6ta2         123 GISDI-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ------------------------ISDIVP-LA  175 (210)
T ss_dssp             CCCCC-GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC------------------------CCCCGG-GT
T ss_pred             ccccc-ccccccccccccccccccccccc-ccccccccccccccccc------------------------cccccc-cc
Confidence            55443 23444455555555555444321 23344445555554444                        444332 44


Q ss_pred             CCccCCeEeccCCcCccCCccccccCCCcEEEcC
Q 014200          205 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG  238 (429)
Q Consensus       205 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  238 (429)
                      .+++|+.|++++|.++.++ .+.++++|++|+++
T Consensus       176 ~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEcc
Confidence            4555555555555555543 35555555555553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=9.5e-17  Score=135.90  Aligned_cols=165  Identities=24%  Similarity=0.324  Sum_probs=138.9

Q ss_pred             HhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchh
Q 014200            7 AARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAA   86 (429)
Q Consensus         7 ~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~   86 (429)
                      .+++++.|+++++.+++++.  ++            .+++|++|++++|.++.++ .++.+++|+.|++++|.++.++ .
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~--l~------------~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~  107 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG--IQ------------YLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-S  107 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-G
T ss_pred             HhcCccEEECcCCCCCCchh--Hh------------hCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-c
Confidence            46789999999999988753  22            2788999999999999887 5788999999999999999886 5


Q ss_pred             hhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEE
Q 014200           87 IGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLD  166 (429)
Q Consensus        87 l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~  166 (429)
                      +.++++|+.|++++|.+..++ .+..+++++.++++++.+... ..+..+++|+++++++|+++.++ .+..+++|+.|+
T Consensus       108 l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~-~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~  184 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLY  184 (210)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred             ccccccccccccccccccccc-ccccccccccccccccccccc-ccccccccccccccccccccccc-cccCCCCCCEEE
Confidence            889999999999999887764 578899999999999998865 45678899999999999998765 477889999999


Q ss_pred             ccCCcccccChhhhhcccccceeecC
Q 014200          167 VEGNKLTVLSNNLIASWTMLTELIAS  192 (429)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~L~~L~l~  192 (429)
                      +++|.++.++.  +.++++|++|+++
T Consensus       185 Ls~N~i~~l~~--l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         185 LSKNHISDLRA--LAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCBCGG--GTTCTTCSEEEEE
T ss_pred             CCCCCCCCChh--hcCCCCCCEEEcc
Confidence            99998877642  6677777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.9e-16  Score=132.82  Aligned_cols=163  Identities=23%  Similarity=0.376  Sum_probs=139.1

Q ss_pred             HHhhhcCeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch
Q 014200            6 KAARTSGSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA   85 (429)
Q Consensus         6 ~~~~~l~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~   85 (429)
                      ..+++++.|+++++++++++.  ++            .+++|++|++++|+++.++. ++++++|++|++++|.+..++ 
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~~--l~------------~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-  100 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSIDG--VE------------YLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-  100 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCTT--GG------------GCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-
T ss_pred             HHhcCCCEEECCCCCCCCccc--cc------------cCCCcCcCccccccccCccc-ccCCccccccccccccccccc-
Confidence            456889999999999988743  22            37889999999999998874 899999999999999988876 


Q ss_pred             hhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEE
Q 014200           86 AIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKL  165 (429)
Q Consensus        86 ~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L  165 (429)
                      .+.++++|++|+++++....+ +.+..+++|+.+++++|++..++ .+..+++|+.|++.+|.++.++ .+..+++|+.|
T Consensus       101 ~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L  177 (199)
T d2omxa2         101 PLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERL  177 (199)
T ss_dssp             GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEE
T ss_pred             ccccccccccccccccccccc-cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCc-cccCCCCCCEE
Confidence            488999999999999987765 44788999999999999988764 5788999999999999998775 57889999999


Q ss_pred             EccCCcccccChhhhhccccccee
Q 014200          166 DVEGNKLTVLSNNLIASWTMLTEL  189 (429)
Q Consensus       166 ~l~~~~~~~~~~~~~~~~~~L~~L  189 (429)
                      ++++|++++++.  +..+++|++|
T Consensus       178 ~ls~N~i~~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVSDISV--LAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             ECCCCCCCCCcc--ccCCCCCCcC
Confidence            999999988753  6777777654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=138.06  Aligned_cols=152  Identities=14%  Similarity=0.218  Sum_probs=90.8

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccch-hccCCCCCCEEECCCCCCCC-cc-hhhh
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKE-DLRNLPLLTVLNVSHNKLSE-LP-AAIG   88 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~i~~-~~-~~l~   88 (429)
                      +.+++++.+++++|+.++.               ++++|++++|.++.++. .|.++++|++|++++|.+.. ++ .+|.
T Consensus        11 ~~i~c~~~~l~~iP~~l~~---------------~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~   75 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLPR---------------NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   75 (242)
T ss_dssp             SEEEEESCSCSSCCSCSCS---------------CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE
T ss_pred             CEEEEeCCCCCCcCCCCCC---------------CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc
Confidence            5677887778888776643               47788888888887766 47778888888888877654 33 3677


Q ss_pred             CCCCCcEeecCC-CcCccC-CccccCCCCcCEEecCCCCCCcCCc--cccCCCCCCEEEcCCCccccCC-cccccc-CCC
Q 014200           89 ELHMLKSLDVSF-NSIMKI-PDEIGSATALVKFDCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLP-EDLADC-SKM  162 (429)
Q Consensus        89 ~l~~L~~L~l~~-~~i~~l-~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~-~~l~~~-~~L  162 (429)
                      ++++++++.+.. +.+..+ +..+.++++|++++++++++...+.  .+..+..+..+...++.+..++ ..+..+ ..+
T Consensus        76 ~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l  155 (242)
T d1xwdc1          76 NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES  155 (242)
T ss_dssp             SCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSC
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccc
Confidence            777878777654 355433 3446777777777777777665432  1222233333333444444332 122222 245


Q ss_pred             cEEEccCCcccccChh
Q 014200          163 SKLDVEGNKLTVLSNN  178 (429)
Q Consensus       163 ~~L~l~~~~~~~~~~~  178 (429)
                      +.+++++|.+..++..
T Consensus       156 ~~L~l~~n~l~~i~~~  171 (242)
T d1xwdc1         156 VILWLNKNGIQEIHNC  171 (242)
T ss_dssp             EEEECCSSCCCEECTT
T ss_pred             eeeecccccccccccc
Confidence            5555555555544443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.6e-16  Score=137.81  Aligned_cols=203  Identities=16%  Similarity=0.196  Sum_probs=128.0

Q ss_pred             ccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCcc-C-CccccCCCCcC
Q 014200           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMK-I-PDEIGSATALV  117 (429)
Q Consensus        41 ~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~-l-~~~~~~~~~L~  117 (429)
                      .+.|. -+.++.++..++.+|..+.  +++++|++++|.++.+|. +|.++++|++|++++|.+.. + +..+.++++++
T Consensus         5 ~C~C~-~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~   81 (242)
T d1xwdc1           5 ICHCS-NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   81 (242)
T ss_dssp             SEEEC-SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCC
T ss_pred             cCCCc-CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccc
Confidence            34454 3678888888888886553  579999999999998876 78999999999999997764 3 33577888999


Q ss_pred             EEecCC-CCCCcCC-ccccCCCCCCEEEcCCCccccCCc--cccccCCCcEEEccCCcccccChhhhhccc-ccceeecC
Q 014200          118 KFDCSS-NQLKELP-SSLGRCLNLSDFKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSNNLIASWT-MLTELIAS  192 (429)
Q Consensus       118 ~L~l~~-~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~  192 (429)
                      ++.+.. +.+..++ ..+..+++|+++++.++.+...+.  .+.....+..+...++.+..++...+.+++ .++.++++
T Consensus        82 ~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~  161 (242)
T d1xwdc1          82 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  161 (242)
T ss_dssp             EEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             cccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecc
Confidence            988753 5565443 456788888888888887775432  233344555555555556555544444432 45555555


Q ss_pred             CccCCcCCccccCCccCCeE-eccCCcCccCCc-cccccCCCcEEEcCCCCCCccC
Q 014200          193 KNLLNGMPETIGSLSRLIRL-DLHQNRILSIPS-SISGCCSLAEFYMGNNALSALP  246 (429)
Q Consensus       193 ~~~l~~~~~~~~~~~~L~~L-~l~~~~~~~~~~-~~~~~~~L~~L~l~~n~i~~~~  246 (429)
                      +++++.++.......+++.+ .+.+|.++.++. .|.++++|++|++++|.++.+|
T Consensus       162 ~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         162 KNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP  217 (242)
T ss_dssp             SSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC
T ss_pred             cccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC
Confidence            55555544433333443333 234444554432 3455555555555555555443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.60  E-value=1.3e-15  Score=126.91  Aligned_cols=124  Identities=19%  Similarity=0.317  Sum_probs=72.5

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCc-cch-hccCCCCCCEEECCCCCCCCcc-hhhh
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEK-LKE-DLRNLPLLTVLNVSHNKLSELP-AAIG   88 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~   88 (429)
                      ++++++++++++||..++.               ++++|++++|.++. ++. .|.++++|+.|++++|.+..++ ..+.
T Consensus        11 ~~v~Cs~~~L~~iP~~lp~---------------~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~   75 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIPL---------------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE   75 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT---------------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             CEEEEeCCCcCccCCCCCC---------------CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccc
Confidence            4566777777766665532               36666776666653 322 4566666666666666666443 3566


Q ss_pred             CCCCCcEeecCCCcCccCCc-cccCCCCcCEEecCCCCCCcCCc-cccCCCCCCEEEcCCCccc
Q 014200           89 ELHMLKSLDVSFNSIMKIPD-EIGSATALVKFDCSSNQLKELPS-SLGRCLNLSDFKASNNCIT  150 (429)
Q Consensus        89 ~l~~L~~L~l~~~~i~~l~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~  150 (429)
                      .+++|++|++++|++..+++ .|.++++|++|++++|+++.++. .+..+++|+++++++|.+.
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            66666666666666665543 35556666666666666665543 3444555555555555443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.7e-15  Score=130.90  Aligned_cols=242  Identities=15%  Similarity=0.218  Sum_probs=124.7

Q ss_pred             CeeeccCCCCccCChhhhhhhccccCCCcccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCC--cchhhhC
Q 014200           12 GSLNLSNRSLRDVPNEVYKNFDEAGEGDKWWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSE--LPAAIGE   89 (429)
Q Consensus        12 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~--~~~~l~~   89 (429)
                      +++|++++.+.   +.+......          ..+..+.+....+...........+|++|+++++.++.  +...+.+
T Consensus         3 ~~lDLs~~~l~---~~~l~~l~~----------~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~   69 (284)
T d2astb2           3 QTLDLTGKNLH---PDVTGRLLS----------QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQ   69 (284)
T ss_dssp             SEEECTTCBCC---HHHHHHHHH----------TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTT
T ss_pred             CEEECCCCCCC---chHHHHHHh----------ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHh
Confidence            57899988753   333333221          23455666554444322233445678888888887662  3456678


Q ss_pred             CCCCcEeecCCCcCc-cCCccccCCCCcCEEecCCC-CCCc--CCccccCCCCCCEEEcCCCc-cc--cCCcccc-ccCC
Q 014200           90 LHMLKSLDVSFNSIM-KIPDEIGSATALVKFDCSSN-QLKE--LPSSLGRCLNLSDFKASNNC-IT--SLPEDLA-DCSK  161 (429)
Q Consensus        90 l~~L~~L~l~~~~i~-~l~~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~~~~L~~L~l~~~~-~~--~~~~~l~-~~~~  161 (429)
                      +++|++|++++|.+. ..+..+..+++|++|+++++ .++.  +......+++|++|+++++. ++  .+...+. .+++
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            888888888888765 23445666777888887764 3431  11222345566666665542 22  1111111 1345


Q ss_pred             CcEEEccCCc--ccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCc-Cc-cCCccccccCCCcEEEc
Q 014200          162 MSKLDVEGNK--LTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR-IL-SIPSSISGCCSLAEFYM  237 (429)
Q Consensus       162 L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-~~-~~~~~~~~~~~L~~L~l  237 (429)
                      |+.|+++++.  ++...                      +......+++|++|++++|. ++ .....+..+++|++|++
T Consensus       150 L~~L~l~~~~~~i~~~~----------------------l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L  207 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSD----------------------LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL  207 (284)
T ss_dssp             CCEEECCSCGGGSCHHH----------------------HHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred             cchhhhccccccccccc----------------------ccccccccccccccccccccCCCchhhhhhcccCcCCEEEC
Confidence            5555555431  11110                      11112334556666665543 33 22344556667777777


Q ss_pred             CCC-CCCc-cChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCC
Q 014200          238 GNN-ALSA-LPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSG  289 (429)
Q Consensus       238 ~~n-~i~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~  289 (429)
                      ++| .+++ ....++.+++|+.|++.++ ++.-........+.++.+..+++++
T Consensus       208 ~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~i~~~~ls~  260 (284)
T d2astb2         208 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTT  260 (284)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCC
T ss_pred             CCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCccccccCccCCC
Confidence            665 4542 2334566677777777665 3322112121224444455555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.4e-15  Score=119.02  Aligned_cols=125  Identities=22%  Similarity=0.214  Sum_probs=74.2

Q ss_pred             ccccCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCcc-ccCCCCcCEE
Q 014200           41 WWEAVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDE-IGSATALVKF  119 (429)
Q Consensus        41 ~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~~~~L~~L  119 (429)
                      +.++.++++|++++|+|+.++..+..+++|+.|++++|.+..++ .+..+++|++|++++|.+..+++. +..+++|++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            33455566666666666666555556666666666666666553 356666666666666666665544 3456666666


Q ss_pred             ecCCCCCCcCCc--cccCCCCCCEEEcCCCccccCCc----cccccCCCcEEE
Q 014200          120 DCSSNQLKELPS--SLGRCLNLSDFKASNNCITSLPE----DLADCSKMSKLD  166 (429)
Q Consensus       120 ~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~----~l~~~~~L~~L~  166 (429)
                      ++++|++..++.  .+..+++|+++++++|+++..+.    .+..+++|+.||
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            666666665432  34555666666666665554442    244455555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=8.4e-16  Score=140.56  Aligned_cols=239  Identities=21%  Similarity=0.195  Sum_probs=141.5

Q ss_pred             ccchhccCCCCCCEEECCCCCCCC-----cchhhhCCCCCcEeecCCCcCccC-----------CccccCCCCcCEEecC
Q 014200           59 KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIMKI-----------PDEIGSATALVKFDCS  122 (429)
Q Consensus        59 ~l~~~~~~~~~L~~L~l~~~~i~~-----~~~~l~~l~~L~~L~l~~~~i~~l-----------~~~~~~~~~L~~L~l~  122 (429)
                      .+...+.+...++.|++++|.++.     +...+...++|+.++++++.....           ...+..+++|++|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            445557778888888888887762     334566778888888877644322           1223455666666666


Q ss_pred             CCCCCc-----CCccccCCCCCCEEEcCCCccccC-----CccccccCCCcEEEccCCcccccChhhhhcccccceeecC
Q 014200          123 SNQLKE-----LPSSLGRCLNLSDFKASNNCITSL-----PEDLADCSKMSKLDVEGNKLTVLSNNLIASWTMLTELIAS  192 (429)
Q Consensus       123 ~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  192 (429)
                      +|.+..     +...+..+++|++|++++|.+...     ...+..+               .........+.++.+.++
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~---------------~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL---------------AVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH---------------HHHHHHHTCCCCCEEECC
T ss_pred             ccccccccccchhhhhcccccchheeccccccccccccccccccccc---------------ccccccccCcccceeecc
Confidence            665542     122333445555555555544310     0000000               000001123345555555


Q ss_pred             CccCCc-----CCccccCCccCCeEeccCCcCcc------CCccccccCCCcEEEcCCCCCCc-----cChhhcCCCCCC
Q 014200          193 KNLLNG-----MPETIGSLSRLIRLDLHQNRILS------IPSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLG  256 (429)
Q Consensus       193 ~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~L~~L~l~~n~i~~-----~~~~~~~~~~L~  256 (429)
                      ++.++.     +...+...+.++.+++++|.+..      +...+..+++|+.|++++|.++.     +...+..+++|+
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccch
Confidence            554431     22234455677777777777652      23456777888888888888762     345567888888


Q ss_pred             EEECCCCcCccccchh--------hccccCEEEccCCCCCC-----CCcccc-CCCCCCEEEccCCCCCC
Q 014200          257 TLDLHSNQLKEYCVEA--------CQLRLSVLDLSNNSLSG-----LPPEIG-KMTTLRKLLLTGNPLRT  312 (429)
Q Consensus       257 ~L~l~~n~l~~~~~~~--------~~~~L~~l~l~~n~l~~-----l~~~l~-~~~~L~~L~l~~~~i~~  312 (429)
                      +|++++|.+++.....        ....+++|++++|.++.     +...+. ++++|+.|++++|.+.+
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            9999888887421111        12348899999998875     334443 67899999999998854

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=2.8e-14  Score=109.14  Aligned_cols=82  Identities=27%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCc--cccCCCCcCEEec
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPD--EIGSATALVKFDC  121 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~--~~~~~~~L~~L~l  121 (429)
                      +++|++|++++|.++.+|..+..+++|+.|++++|.++.+| .+..+++|++|++++|.+..++.  .+..+++|+++++
T Consensus        19 l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          19 LLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             GTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            33455555555555555444444555555555555544443 24444445555554444443331  2334444444444


Q ss_pred             CCCCC
Q 014200          122 SSNQL  126 (429)
Q Consensus       122 ~~~~l  126 (429)
                      ++|++
T Consensus        98 ~~N~i  102 (124)
T d1dcea3          98 QGNSL  102 (124)
T ss_dssp             TTSGG
T ss_pred             CCCcC
Confidence            44443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=1.6e-14  Score=120.16  Aligned_cols=123  Identities=22%  Similarity=0.279  Sum_probs=82.1

Q ss_pred             cceeecCCccCCcCCccccCCccCCeEeccCCcCcc-C-CccccccCCCcEEEcCCCCCCcc-ChhhcCCCCCCEEECCC
Q 014200          186 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS-I-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHS  262 (429)
Q Consensus       186 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~~L~~L~l~~  262 (429)
                      .++++.++++++.+|..+.  +.+++|++++|.++. + +..|..+++|++|++++|.+..+ +..+..+++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4567777777777776542  567778888887763 3 35567777777777777777755 44566777777777777


Q ss_pred             CcCccccchhhc--cccCEEEccCCCCCCCC-ccccCCCCCCEEEccCCCC
Q 014200          263 NQLKEYCVEACQ--LRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPL  310 (429)
Q Consensus       263 n~l~~~~~~~~~--~~L~~l~l~~n~l~~l~-~~l~~~~~L~~L~l~~~~i  310 (429)
                      |.+..+++..+.  .+|++|+|++|.++.++ .+|..+++|+++++++|++
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccc
Confidence            777776655432  33666777666666653 3456666666666666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=3.5e-14  Score=108.58  Aligned_cols=101  Identities=29%  Similarity=0.424  Sum_probs=57.7

Q ss_pred             cEEEcCCCCCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCC
Q 014200           48 QKLILAHNNIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLK  127 (429)
Q Consensus        48 ~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~  127 (429)
                      |.|++++|+++.++ .+.++++|++|++++|.++.+|+.+..+++|++|++++|.++.++ .+..+++|+++++++|++.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccC
Confidence            35666666666554 355666666666666666666555666666666666666666554 2555666666666666555


Q ss_pred             cCC--ccccCCCCCCEEEcCCCccc
Q 014200          128 ELP--SSLGRCLNLSDFKASNNCIT  150 (429)
Q Consensus       128 ~~~--~~~~~~~~L~~L~l~~~~~~  150 (429)
                      .++  ..+..+++|+++++++|+++
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCC
Confidence            443  23444455555555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=4.6e-15  Score=135.57  Aligned_cols=228  Identities=18%  Similarity=0.185  Sum_probs=109.2

Q ss_pred             cCCccEEEcCCCCCC-----ccchhccCCCCCCEEECCCCCCCC-----------cchhhhCCCCCcEeecCCCcCcc--
Q 014200           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----------LPAAIGELHMLKSLDVSFNSIMK--  105 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~i~~-----------~~~~l~~l~~L~~L~l~~~~i~~--  105 (429)
                      ..+++.|++++|.+.     .+...+...++|+.++++++....           +..++..+++|++|++++|.+..  
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            444555555555443     223334455555555555543321           11223445556666666555442  


Q ss_pred             ---CCccccCCCCcCEEecCCCCCCc-----CC---------ccccCCCCCCEEEcCCCccc-----cCCccccccCCCc
Q 014200          106 ---IPDEIGSATALVKFDCSSNQLKE-----LP---------SSLGRCLNLSDFKASNNCIT-----SLPEDLADCSKMS  163 (429)
Q Consensus       106 ---l~~~~~~~~~L~~L~l~~~~l~~-----~~---------~~~~~~~~L~~L~l~~~~~~-----~~~~~l~~~~~L~  163 (429)
                         +...+..+++|++|++++|.+..     +.         ......+.|+.+.++++.+.     .+...+..++.++
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               22233445556666665555431     00         01124456777777776655     2233455667888


Q ss_pred             EEEccCCcccccChhhhhcccccceeecCCccCCcCCccccCCccCCeEeccCCcCc-----cCCccccccCCCcEEEcC
Q 014200          164 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMG  238 (429)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~L~~L~l~  238 (429)
                      .+++++|.+...+...+                  +...+...++|+.|++++|.++     .+...+..+++|++|+++
T Consensus       190 ~L~L~~n~i~~~g~~~~------------------l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls  251 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHL------------------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  251 (344)
T ss_dssp             EEECCSSCCCHHHHHHH------------------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             ccccccccccccccccc------------------hhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence            88888877653211000                  0011223344445555554443     122334455555666666


Q ss_pred             CCCCCc-----cChhhcC--CCCCCEEECCCCcCcc-----ccchh--hccccCEEEccCCCCCC
Q 014200          239 NNALSA-----LPAELGK--LSKLGTLDLHSNQLKE-----YCVEA--CQLRLSVLDLSNNSLSG  289 (429)
Q Consensus       239 ~n~i~~-----~~~~~~~--~~~L~~L~l~~n~l~~-----~~~~~--~~~~L~~l~l~~n~l~~  289 (429)
                      +|.++.     +...+..  .+.|++|++++|.++.     +....  ..+.|++|++++|.+..
T Consensus       252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            655552     2222322  3456666666666552     11111  12246666666666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3e-14  Score=114.58  Aligned_cols=127  Identities=17%  Similarity=0.146  Sum_probs=99.2

Q ss_pred             hccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCCCCCcCCcc-ccCCCCCCE
Q 014200           63 DLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSNQLKELPSS-LGRCLNLSD  141 (429)
Q Consensus        63 ~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~  141 (429)
                      .+.+..++++|++++|.|+.++..+..+++|++|++++|.+..++ .+..+++|++|++++|++..++.. +..+++|++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccccccccc
Confidence            356778899999999999988777778899999999999888874 478888999999999998887654 356888888


Q ss_pred             EEcCCCccccCCc--cccccCCCcEEEccCCcccccCh---hhhhcccccceee
Q 014200          142 FKASNNCITSLPE--DLADCSKMSKLDVEGNKLTVLSN---NLIASWTMLTELI  190 (429)
Q Consensus       142 L~l~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~  190 (429)
                      |++++|.+..++.  .+..+++|+++++++|+++..+.   ..+..+++|+.|+
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888888876653  56778888888888888776553   2345556666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.8e-14  Score=125.48  Aligned_cols=197  Identities=18%  Similarity=0.159  Sum_probs=107.7

Q ss_pred             cccccceeecCCccCCc--CCccccCCccCCeEeccCCcCc-cCCccccccCCCcEEEcCCC-CCCc--cChhhcCCCCC
Q 014200          182 SWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN-ALSA--LPAELGKLSKL  255 (429)
Q Consensus       182 ~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~n-~i~~--~~~~~~~~~~L  255 (429)
                      ....|++++++++.+..  +...+..+++|++|++.+|.+. ..+..+..+++|++|++++| .++.  +......+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            33567777777766542  3344566677777777777665 22344566677777777765 4552  23334566777


Q ss_pred             CEEECCCC-cCcc--ccch--hhccccCEEEccCC--CCCC--CCccccCCCCCCEEEccCCC-CCCccccccCCCcHHH
Q 014200          256 GTLDLHSN-QLKE--YCVE--ACQLRLSVLDLSNN--SLSG--LPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPAL  325 (429)
Q Consensus       256 ~~L~l~~n-~l~~--~~~~--~~~~~L~~l~l~~n--~l~~--l~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~~  325 (429)
                      ++|+++++ .+++  +...  .....|++++++++  .+++  +.....+|++|+.|++++|. +++-.           
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-----------  192 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-----------  192 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG-----------
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh-----------
Confidence            77777765 3332  1111  11234777777664  2333  33344567777777777654 22100           


Q ss_pred             HHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCC-ccc-cCChhhhccCCCcEEeCCCCcccc--CChhhcc
Q 014200          326 LKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGM-NLS-AIPSEIWEAGEITKLDLSRNSIQE--LPPELSS  401 (429)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~-~i~-~~~~~~~~~~~L~~L~ls~n~i~~--~~~~l~~  401 (429)
                                             ... ...+++|++|++++| .++ .....+..+++|+.|++++| +++  ++.....
T Consensus       193 -----------------------~~~-l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~  247 (284)
T d2astb2         193 -----------------------FQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEA  247 (284)
T ss_dssp             -----------------------GGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHH
T ss_pred             -----------------------hhh-hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHh
Confidence                                   000 112357777777775 455 33445566777777777777 443  3332234


Q ss_pred             cccceeeccccCCCcccc
Q 014200          402 CASLQVKFSDLVTNKESC  419 (429)
Q Consensus       402 l~~L~~L~~~l~~n~i~~  419 (429)
                      +|+|   +  +..++++.
T Consensus       248 lp~L---~--i~~~~ls~  260 (284)
T d2astb2         248 LPHL---Q--INCSHFTT  260 (284)
T ss_dssp             STTS---E--ESCCCSCC
T ss_pred             Cccc---c--ccCccCCC
Confidence            4444   4  44455554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-12  Score=103.58  Aligned_cols=113  Identities=20%  Similarity=0.245  Sum_probs=75.0

Q ss_pred             cCEEEccCCCCCCCCccccCCCCCCEEEccCC-CCCCccccccCCCcHHHHHHHHhcCCCCCcccccCChhhHHhhhhcc
Q 014200          277 LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN-PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL  355 (429)
Q Consensus       277 L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (429)
                      .+.++.+++.+++.|..+..+++|++|+++++ .++.++...|.+.                                  
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l----------------------------------   55 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL----------------------------------   55 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSC----------------------------------
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccc----------------------------------
Confidence            34466666666666666666777777777655 3666665555442                                  


Q ss_pred             ccccccccccCCccccCC-hhhhccCCCcEEeCCCCccccCChhhcccccceeeccccCCCccccccccccccc
Q 014200          356 SVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQELPPELSSCASLQVKFSDLVTNKESCISGCYLYWN  428 (429)
Q Consensus       356 ~~~L~~l~l~~~~i~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~l~~l~~L~~L~~~l~~n~i~~i~~~~~~~~  428 (429)
                       ++|+.|++++|+|+.++ ..+..+++|++|+|++|+|+.+|.......+|+.|+  |++|++.|  +|-+.|+
T Consensus        56 -~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~--L~~Np~~C--~C~~~~l  124 (156)
T d2ifga3          56 -GELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELV--LSGNPLHC--SCALRWL  124 (156)
T ss_dssp             -CCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEE--CCSSCCCC--CGGGHHH
T ss_pred             -cccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccccccccc--cCCCcccC--CchHHHH
Confidence             46777777777777664 345567777777777777777666555555677777  77777776  6666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=1.7e-14  Score=120.17  Aligned_cols=125  Identities=30%  Similarity=0.334  Sum_probs=85.7

Q ss_pred             ccEEEcCCC--CCCccchhccCCCCCCEEECCCCCCCCcchhhhCCCCCcEeecCCCcCccCCccccCCCCcCEEecCCC
Q 014200           47 LQKLILAHN--NIEKLKEDLRNLPLLTVLNVSHNKLSELPAAIGELHMLKSLDVSFNSIMKIPDEIGSATALVKFDCSSN  124 (429)
Q Consensus        47 L~~L~l~~~--~i~~l~~~~~~~~~L~~L~l~~~~i~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~  124 (429)
                      .+.+++.+.  .+..++..+..+++|++|++++|.|+.++ .+.++++|++|++++|.+..++.....+++|++|++++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccc
Confidence            455555543  35566667777778888888877777764 477777888888887777777655555567777777777


Q ss_pred             CCCcCCccccCCCCCCEEEcCCCccccCC--ccccccCCCcEEEccCCccc
Q 014200          125 QLKELPSSLGRCLNLSDFKASNNCITSLP--EDLADCSKMSKLDVEGNKLT  173 (429)
Q Consensus       125 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~l~~~~~L~~L~l~~~~~~  173 (429)
                      ++..+ ..+..+++|++|++++|.++.++  ..+..+++|+.|++++|++.
T Consensus       104 ~i~~l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         104 QIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ECCCH-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccc-ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            77765 33556677777777777776554  24666777777777777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=1.7e-13  Score=114.04  Aligned_cols=131  Identities=16%  Similarity=0.181  Sum_probs=84.7

Q ss_pred             CCccChhhcCCCCCCEEECCCCcCccccchhhccccCEEEccCCCCCCCCccccCCCCCCEEEccCCCCCCccccccCCC
Q 014200          242 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP  321 (429)
Q Consensus       242 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~l~l~~n~l~~l~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~  321 (429)
                      +..++..+..+++|+.|++++|.++.++......+|++|++++|.+++++.....+++|+.|++++|.+++++       
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-------  109 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-------  109 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-------
T ss_pred             hhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhcccccccccccccccccccccccccccccccc-------
Confidence            3344455666666666666666666654433344566677766666666655555566777777777765431       


Q ss_pred             cHHHHHHHHhcCCCCCcccccCChhhHHhhhhccccccccccccCCccccCC--hhhhccCCCcEEeCCCCcccc-CCh-
Q 014200          322 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQE-LPP-  397 (429)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~i~~~~--~~~~~~~~L~~L~ls~n~i~~-~~~-  397 (429)
                         .+..                           .++|+.|++++|+|+.++  ..+..+++|+.|++++|+++. .+. 
T Consensus       110 ---~~~~---------------------------l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  159 (198)
T d1m9la_         110 ---GIEK---------------------------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             ---HHHH---------------------------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTT
T ss_pred             ---cccc---------------------------cccccccccccchhccccccccccCCCccceeecCCCccccCcccc
Confidence               1111                           246778888888887665  356788999999999998765 221 


Q ss_pred             ---------hhcccccceeec
Q 014200          398 ---------ELSSCASLQVKF  409 (429)
Q Consensus       398 ---------~l~~l~~L~~L~  409 (429)
                               .+..+|+|+.||
T Consensus       160 ~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         160 NATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             TTHHHHHHHHHHHCSSCCEES
T ss_pred             cchhhHHHHHHHHCCCcCEeC
Confidence                     256788898888

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.9e-11  Score=94.71  Aligned_cols=106  Identities=19%  Similarity=0.182  Sum_probs=64.9

Q ss_pred             cCCccEEEcCCCCCCccchhccCCCCCCEEECCCC-CCCCcch-hhhCCCCCcEeecCCCcCccCC-ccccCCCCcCEEe
Q 014200           44 AVDLQKLILAHNNIEKLKEDLRNLPLLTVLNVSHN-KLSELPA-AIGELHMLKSLDVSFNSIMKIP-DEIGSATALVKFD  120 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~L~l~~~-~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~-~~~~~~~~L~~L~  120 (429)
                      |...+.++.+++.+...|..+..+++|++|+++++ .++.++. +|.++++|+.|++++|.++.++ ..|..+++|++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            33445566666666666666666667777777554 3665543 5666777777777776666663 3466666666666


Q ss_pred             cCCCCCCcCCccccCCCCCCEEEcCCCcc
Q 014200          121 CSSNQLKELPSSLGRCLNLSDFKASNNCI  149 (429)
Q Consensus       121 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  149 (429)
                      +++|+++.++.......+|++|++++|.+
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             ccCCCCcccChhhhccccccccccCCCcc
Confidence            66666666655444444555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.25  E-value=3.6e-07  Score=72.70  Aligned_cols=58  Identities=26%  Similarity=0.271  Sum_probs=26.1

Q ss_pred             cCCccEEEcCCCCCC-----ccchhccCCCCCCEEECCCCCCCC-----cchhhhCCCCCcEeecCCC
Q 014200           44 AVDLQKLILAHNNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFN  101 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~i~~-----~~~~l~~l~~L~~L~l~~~  101 (429)
                      .++|++|++++|.+.     .+...+...+.|++|++++|.++.     +..++...+.|++|++++|
T Consensus        43 n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          43 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            344555555555444     122233444555555555554441     1223444444555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=6.1e-07  Score=70.96  Aligned_cols=77  Identities=23%  Similarity=0.202  Sum_probs=49.5

Q ss_pred             cCCccEEEcCCCCCCccc---hhccCCCCCCEEECCCCCCCCcch-hhhCCCCCcEeecCCCcCccCC--------cccc
Q 014200           44 AVDLQKLILAHNNIEKLK---EDLRNLPLLTVLNVSHNKLSELPA-AIGELHMLKSLDVSFNSIMKIP--------DEIG  111 (429)
Q Consensus        44 ~~~L~~L~l~~~~i~~l~---~~~~~~~~L~~L~l~~~~i~~~~~-~l~~l~~L~~L~l~~~~i~~l~--------~~~~  111 (429)
                      +++|++|++++|+++.++   ..+..+++|+.|++++|.+.++++ ...+..+|+.|++++|.+....        ..+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~  143 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE  143 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence            566777777777777543   335667777777777777777654 3334456777777777665331        1145


Q ss_pred             CCCCcCEEe
Q 014200          112 SATALVKFD  120 (429)
Q Consensus       112 ~~~~L~~L~  120 (429)
                      .+|+|+.|+
T Consensus       144 ~~P~L~~LD  152 (162)
T d1koha1         144 RFPKLLRLD  152 (162)
T ss_dssp             TSTTCCEET
T ss_pred             HCCCCCEEC
Confidence            577777764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.18  E-value=1e-06  Score=69.94  Aligned_cols=113  Identities=13%  Similarity=0.185  Sum_probs=64.3

Q ss_pred             cCCccEEEcCCC-CCC-----ccchhccCCCCCCEEECCCCCCC-----CcchhhhCCCCCcEeecCCCcCcc-----CC
Q 014200           44 AVDLQKLILAHN-NIE-----KLKEDLRNLPLLTVLNVSHNKLS-----ELPAAIGELHMLKSLDVSFNSIMK-----IP  107 (429)
Q Consensus        44 ~~~L~~L~l~~~-~i~-----~l~~~~~~~~~L~~L~l~~~~i~-----~~~~~l~~l~~L~~L~l~~~~i~~-----l~  107 (429)
                      .++|++|+++++ .++     .+...+...++|++|++++|.++     .+.+.+...+.|++|++++|.+..     +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            466777777653 344     23334667777888888877766     233455667777777777776652     23


Q ss_pred             ccccCCCCcCEEecCCCCCCcCCccccCCCCCCEEEcCCCccccCCccccccCCCcEEEccCCc
Q 014200          108 DEIGSATALVKFDCSSNQLKELPSSLGRCLNLSDFKASNNCITSLPEDLADCSKMSKLDVEGNK  171 (429)
Q Consensus       108 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~L~~L~l~~~~  171 (429)
                      ..+...+.|++|+++++.+..+....               ...+...+...+.|+.++++++.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~---------------~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQV---------------EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHH---------------HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHH---------------HHHHHHHHHhCCCccEeeCcCCC
Confidence            34555566666666655443321100               00123345556777777776553

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=1.5e-06  Score=68.68  Aligned_cols=65  Identities=20%  Similarity=0.109  Sum_probs=53.1

Q ss_pred             ccccccccccccCCccccCC---hhhhccCCCcEEeCCCCccccCCh-hhcccccceeeccccCCCccccc
Q 014200          354 RLSVTSKELSLEGMNLSAIP---SEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQVKFSDLVTNKESCI  420 (429)
Q Consensus       354 ~~~~~L~~l~l~~~~i~~~~---~~~~~~~~L~~L~ls~n~i~~~~~-~l~~l~~L~~L~~~l~~n~i~~i  420 (429)
                      ..+++|+.|++++|+|+.++   ..+..+++|+.|++++|.|+++++ .......|++|+  +++|++++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~--L~~Npl~~~  130 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELW--LDGNSLSDT  130 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCC--CTTSTTSSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceee--cCCCCcCcC
Confidence            34579999999999999664   456689999999999999998665 223446799999  999999874

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.90  E-value=3.2e-06  Score=66.96  Aligned_cols=104  Identities=23%  Similarity=0.295  Sum_probs=50.0

Q ss_pred             cCCccEEEcCC-CCCC-----ccchhccCCCCCCEEECCCCCCCC-----cchhhhCCCCCcEeecCCCcCc-----cCC
Q 014200           44 AVDLQKLILAH-NNIE-----KLKEDLRNLPLLTVLNVSHNKLSE-----LPAAIGELHMLKSLDVSFNSIM-----KIP  107 (429)
Q Consensus        44 ~~~L~~L~l~~-~~i~-----~l~~~~~~~~~L~~L~l~~~~i~~-----~~~~l~~l~~L~~L~l~~~~i~-----~l~  107 (429)
                      .++|++|++++ +.++     .+...+..+++|++|++++|.++.     +...+...+.++.+++++|.+.     .+.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            34555555554 2333     122234455556666666555541     2234445555666666555543     223


Q ss_pred             ccccCCCCcCEEecC--CCCCC-----cCCccccCCCCCCEEEcCCC
Q 014200          108 DEIGSATALVKFDCS--SNQLK-----ELPSSLGRCLNLSDFKASNN  147 (429)
Q Consensus       108 ~~~~~~~~L~~L~l~--~~~l~-----~~~~~~~~~~~L~~L~l~~~  147 (429)
                      ..+...++|+.++++  ++.+.     .+...+...++|++|++..+
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            344455555554443  33333     23334445566666666544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.79  E-value=1.2e-05  Score=63.54  Aligned_cols=106  Identities=13%  Similarity=0.172  Sum_probs=56.3

Q ss_pred             cCCCCCCEEECCCC-CCC-----CcchhhhCCCCCcEeecCCCcCc-----cCCccccCCCCcCEEecCCCCCC-----c
Q 014200           65 RNLPLLTVLNVSHN-KLS-----ELPAAIGELHMLKSLDVSFNSIM-----KIPDEIGSATALVKFDCSSNQLK-----E  128 (429)
Q Consensus        65 ~~~~~L~~L~l~~~-~i~-----~~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~L~l~~~~l~-----~  128 (429)
                      .+.++|++|+++++ .++     .+..++..+++|++|++++|.+.     .+...+...+.++.++++++.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            44566666666653 344     12234556666666666666554     22333445566666666666554     2


Q ss_pred             CCccccCCCCCCEEEcC--CCccc-----cCCccccccCCCcEEEccCC
Q 014200          129 LPSSLGRCLNLSDFKAS--NNCIT-----SLPEDLADCSKMSKLDVEGN  170 (429)
Q Consensus       129 ~~~~~~~~~~L~~L~l~--~~~~~-----~~~~~l~~~~~L~~L~l~~~  170 (429)
                      +...+...++|+.+++.  +|.+.     .+...+..+++|+.|++..+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            23444555666655443  33333     22334455666666666554