Citrus Sinensis ID: 014213

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
Protein Sequence
MGRNSGKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRIEEKMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNEKVNSLDIEQKYFENGNVGNGKEADKGSCCIDDWIIEFAQLIVQLGKHSHVQSKEGGLPHQRGFYRICTGTDKKCI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccccHHccccccccHHHHHHHHHHcccccccEEEEEEcccccEEEEccHHHHHHHHHHHccccccEEEEEEcccccccHHHHccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHEEHHcHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccHHccccccccccHHccccccccccccEEcccHcccccccEEccccccEEEEEEcEcccccccccEEEEEEcccEEEEEccccccHHHHHHHHHHHcccccEEEEEEEcccccEEEEEcHHHHHHHHHHccccccEEEEEEEEccccccccccccccccccccHHHccccccccccccccccccccHHHHHHHHHHHHHcccccHHccHHHHcHHHHHHHHHHcccHHHHcc
Coil and Loop (DISEMBL)
mgrnsgktkkqiggqsvggspkqikvgehspksydkdTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLlprnhidvsYLRSNMAACYMQMglseypraIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRglrvndtvielppeyveppvtsiapkVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRIEEKMAEDKVVVEEKisstednepkktvKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYrdeegdlvtitTDEELRWAEASAEMQGSVRLFVVgvnplqdplyerfknekvNSLDIEQKYfengnvgngkeadkgscciDDWIIEFAQLIVQLGKhshvqskegglphqrgfyrictgtdkkci
Flexible Loop (DISEMBL)
mgrnsgktkkqiggqsvggspkqikvgehspksydkdTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDlafrdvttvlnkepknimaaEIAERVKKElekrglrvndtvielppeyveppvtsiapkvvkektkkkkksnkveqkktgvkveekevdekiedkrvdgrieekmaedkvvveekisstednepkktvKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIkyrdeegdlvtITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNEKVNSLDIEQKYFEngnvgngkeadKGSCCIDDWIIEFAQLIVQLGKHSHVqskegglphqrgfyrictgtdkkci
Low Complexity Region (SEG)
MGRNSGKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGallkyekalkllPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPkvvkektkkkkksnkveqkktgvkveekevdekiedkrvdGRIEEKMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNEKVNSLDIEQKYFENGNVGNGKEADKGSCCIDDWIIEFAQLIVQLGKHSHVQSKEGGLPHQRGFYRICTGTDKKCI
Disordered region (IsUnstruct)
**********************************************************RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK**L*KRGLRVNDTVIELP**Y*******************************************************************************VKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNEKVNSLDIEQKYFENGNVGNGKEADKGSCCIDDWIIEFAQLIVQLGKHSHV*****GLPHQRGFYRICTG******
Disordered Region (DISOPRED)
***********************************************LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIA*****************************************************************************************************KKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLY*********************************CCIDDWIIEFAQLIVQLGKHSHVQSKEGGLPHQRGFYRICTGT**KC*
Disordered Region (DISEMBL)
******************************PKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVV*****************************KIEDKRVDGRIEEKMAEDKVV************PKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNEKVNSLDIEQKYFENGNVGNGKEADKGSCCIDDWIIEFAQLIVQLG**********GLPHQRGFYRICTGTDKKCI
Disordered Region (DISPRO)
********************PKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV***PPEYVEP*V***********************************DEKI******GRIEEKMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYER******************************SCCIDDWIIEFAQLIVQLGKHSHVQSKEGGLPHQRGFYRICTG******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRNSGKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRIEEKMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNEKVNSLDIEQKYFENGNVGNGKEADKGSCCIDDWIIEFAQLIVQLGKHSHVQSKEGGLPHQRGFYRICTGTDKKCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	429	2.2.26 [Sep-21-2011]
Q91Z38	292	Tetratricopeptide repeat	yes	no	0.307	0.452	0.370	2e-14
Q3ZBR5	292	Tetratricopeptide repeat	yes	no	0.307	0.452	0.370	4e-14
Q99614	292	Tetratricopeptide repeat	yes	no	0.307	0.452	0.362	4e-14
Q68F64	927	Protein unc-45 homolog B	N/A	no	0.279	0.129	0.357	7e-12
D7REX8	927	Protein unc-45 homolog B	no	no	0.279	0.129	0.349	5e-11
Q3KRD5	309	Mitochondrial import rece	no	no	0.277	0.385	0.376	2e-10
Q9CYG7	309	Mitochondrial import rece	no	no	0.277	0.385	0.376	3e-10
Q5RAP0	929	Protein unc-45 homolog A	no	no	0.242	0.111	0.401	3e-10
Q84JR9	682	TPR repeat-containing thi	no	no	0.268	0.168	0.338	4e-10
Q8CGY6	931	Protein unc-45 homolog B	no	no	0.291	0.134	0.341	6e-10

>sp|Q91Z38|TTC1_MOUSE Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 79/135 (58%), Gaps = 3/135 (2%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN-HIDVSYLRSNMAACYMQMGLSEYPR 103
           S +LKEEGN+ F++ D+  A   Y +AL++ P     D S L SN AA  M+    E   
Sbjct: 116 SAKLKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKE--T 173

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
           AI +C+ A+++ P Y +A+L+RA  YE  ++LD A  D  +VL K+P    A E   R+ 
Sbjct: 174 AITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRLP 233

Query: 164 KELEKRGLRVNDTVI 178
           K++E+R  R+ + ++
Sbjct: 234 KQIEERNERLKEEML 248

Mus musculus (taxid: 10090)

>sp|Q3ZBR5|TTC1_BOVIN Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 77/135 (57%), Gaps = 3/135 (2%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN-HIDVSYLRSNMAACYMQMGLSEYPR 103
           S  LKEEGN+ F+K D+  A   Y +AL+  P     D S L SN AA  M+    E   
Sbjct: 116 SSRLKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAAARMKQEKKEM-- 173

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
           AI +C+ A+++ P Y +A+L+RA  YE  ++LD A  D  ++L K+P    A E   R+ 
Sbjct: 174 AISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLP 233

Query: 164 KELEKRGLRVNDTVI 178
           K++E+R  R+ + ++
Sbjct: 234 KQIEERNERLKEEML 248

Bos taurus (taxid: 9913)

>sp|Q99614|TTC1_HUMAN Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 3/135 (2%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN-HIDVSYLRSNMAACYMQMGLSEYPR 103
           S  LKEEGN+ F+K D+  A   Y +AL++ P     + S L SN AA  M+    E   
Sbjct: 116 STRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEM-- 173

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
           AI++C+ A+++ P Y +A+L+RA  YE  ++LD A  D  ++L K+P    A E   R+ 
Sbjct: 174 AINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLP 233

Query: 164 KELEKRGLRVNDTVI 178
           K++E+R  R+ + ++
Sbjct: 234 KQIEERNERLKEEML 248

Homo sapiens (taxid: 9606)

>sp|Q68F64|UN45B_XENLA Protein unc-45 homolog B OS=Xenopus laevis GN=unc45b PE=2 SV=1

 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 3/123 (2%)

Query: 47  ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106
           +LKEEGNK FQ  D+G A+  Y KALKL+    +  + L  N +ACY++     Y +A  
Sbjct: 6   QLKEEGNKYFQSNDYGNAIECYSKALKLITDKKMK-AVLYRNRSACYLKQ--ENYIQAAA 62

Query: 107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166
           + + A++V     KAL +R +  E L +LD A++DV      EPKN    E+  R+   +
Sbjct: 63  DASKAIDVDASDIKALFRRCQALEKLGKLDQAYKDVQRCATLEPKNRTFLEMLHRLGSNI 122

Query: 167 EKR 169
           +++
Sbjct: 123 QEK 125

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell assembly.

Xenopus laevis (taxid: 8355)

>sp|D7REX8|UN45B_XENTR Protein unc-45 homolog B OS=Xenopus tropicalis GN=unc45b PE=1 SV=1

 Score = 69.3 bits (168), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 47  ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106
           +LKEEGNK FQ  ++G A+  Y KALKL+    +     R N +ACY++     Y +A  
Sbjct: 6   QLKEEGNKYFQSNEYGQAIQCYSKALKLITDKKMQAVLYR-NRSACYLKQ--DNYVQAAA 62

Query: 107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166
           + + A++V     KAL +R +  E L +LD A++DV      EPKN    E   R+   +
Sbjct: 63  DASKAIDVDASDIKALFRRCQALEKLGKLDQAYKDVQRCATLEPKNRTFLETLHRLGTNI 122

Query: 167 EKR 169
           +++
Sbjct: 123 QEK 125

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain (By similarity). Plays a role in sarcomere formation during muscle cell development.

Xenopus tropicalis (taxid: 8364)

>sp|Q3KRD5|TOM34_RAT Mitochondrial import receptor subunit TOM34 OS=Rattus norvegicus GN=Tomm34 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 6/125 (4%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLL-PRNHIDV---SYLRSNMAACYMQMGLSEY 101
           ++L+  GN+ F+   +G A   YE+AL+LL  R   D    S L SN AACY++ G    
Sbjct: 10  EQLRAAGNQNFRNGQYGEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDG--NC 67

Query: 102 PRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161
              I +C  AL + P   K LL+RA  YEAL +  LA+ D  TVL  +     A E   R
Sbjct: 68  TDCIKDCTSALALVPFSIKPLLRRASAYEALEKYSLAYVDYKTVLQIDNSVASALEGINR 127

Query: 162 VKKEL 166
           + + L
Sbjct: 128 ITRAL 132

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Rattus norvegicus (taxid: 10116)

>sp|Q9CYG7|TOM34_MOUSE Mitochondrial import receptor subunit TOM34 OS=Mus musculus GN=Tomm34 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 65/125 (52%), Gaps = 6/125 (4%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLL-PRNHIDV---SYLRSNMAACYMQMGLSEY 101
           ++L+  GN+ F+   +G A   YE+AL+LL  R   D    S L SN AACY++ G    
Sbjct: 10  EQLRAAGNQNFRNGQYGEASALYERALRLLQARGSADPEEESVLYSNRAACYLKDG--NC 67

Query: 102 PRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161
              I +C  AL + P   K LL+RA  YEAL +  LA+ D  TVL  +     A E   R
Sbjct: 68  TDCIKDCTSALALVPFSIKPLLRRASAYEALEKYALAYVDYKTVLQIDNSVASALEGINR 127

Query: 162 VKKEL 166
           + + L
Sbjct: 128 ITRAL 132

Plays a role in the import of cytosolically synthesized preproteins into mitochondria. Binds the mature portion of precursor proteins. Interacts with cellular components, and possesses weak ATPase activity. May be a chaperone-like protein that helps to keep newly synthesized precursors in an unfolded import compatible state.

Mus musculus (taxid: 10090)

>sp|Q5RAP0|UN45A_PONAB Protein unc-45 homolog A OS=Pongo abelii GN=UNC45A PE=2 SV=1

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 3/107 (2%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
           ++L++EGN+LF+  D+GGAL  Y +AL L      D + L  N AACY++  L +Y +A 
Sbjct: 7   EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-DQAVLHRNRAACYLK--LEDYDKAE 63

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
            E + A+E      KAL +R++  E L RLD A  D+   ++ EPKN
Sbjct: 64  TEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 110

May act as co-chaperone for HSP90 (Potential). Prevents the stimulation of HSP90AB1 ATPase activity by AHSA1. Positive factor in promoting PGR function in the cell (By similarity). May be necessary for proper folding of myosin (Potential). Necessary for normal cell proliferation. Necessary for normal myotube formation and myosin accumulation during muscle cell development. May play a role in erythropoiesis in stroma cells in the spleen.

Pongo abelii (taxid: 9601)

>sp|Q84JR9|TTL4_ARATH TPR repeat-containing thioredoxin TTL4 OS=Arabidopsis thaliana GN=TTL4 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 6/121 (4%)

Query: 49  KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHEC 108
           +  GN+LF    +  A + Y   LKL   N    S L  N AAC+ ++G+ E  +++ +C
Sbjct: 453 RTRGNELFSSGRYSEASVAYGDGLKLDAFN----SVLYCNRAACWFKLGMWE--KSVDDC 506

Query: 109 NLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168
           N AL + P Y+KALL+RA  Y  L R + A RD   +  + P +   AE  +R +  L  
Sbjct: 507 NQALRIQPSYTKALLRRAASYGKLGRWEDAVRDYEVLRKELPGDSEVAESLQRARNALSN 566

Query: 169 R 169
           +
Sbjct: 567 K 567

Involved in osmotic and salt stress tolerance. May play a role in the control of meristematic cell size during osmotic stress.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8CGY6|UN45B_MOUSE Protein unc-45 homolog B OS=Mus musculus GN=Unc45b PE=1 SV=1

 Score = 65.9 bits (159), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 72/129 (55%), Gaps = 4/129 (3%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           + +LKEEGN+ FQ +D+  A   Y +ALKL  ++   ++ L  N AAC ++M    Y +A
Sbjct: 6   AAQLKEEGNRHFQLQDYKAATKSYSQALKL-TKDKALLATLYRNRAACGLKM--ESYAQA 62

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164
             + + A+++     KAL +R +  E L +LD AF+DV      EP+N    E   R+  
Sbjct: 63  ASDASRAIDINSADIKALYRRCQALEHLGKLDQAFKDVQRCATLEPRNQNFQETLRRLNT 122

Query: 165 ELEKRGLRV 173
            ++++ LRV
Sbjct: 123 SIQEQ-LRV 130

Acts as a co-chaperone for HSP90 and is required for proper folding of the myosin motor domain. Plays a role in sarcomere formation during muscle cell development.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
224142491	674	predicted protein [Populus trichocarpa]	0.916	0.583	0.669	1e-145
359484683	714	PREDICTED: uncharacterized protein LOC10	0.948	0.570	0.645	1e-139
255583090	709	heat shock protein 70 (HSP70)-interactin	0.881	0.533	0.639	1e-132
449457955	711	PREDICTED: uncharacterized protein LOC10	0.881	0.531	0.632	1e-127
224142515	351	predicted protein [Populus trichocarpa]	0.764	0.934	0.708	1e-125
356546140	724	PREDICTED: uncharacterized protein LOC10	0.885	0.524	0.589	1e-123
296084546	660	unnamed protein product [Vitis vinifera]	0.825	0.536	0.582	1e-121
356532968	730	PREDICTED: uncharacterized protein LOC10	0.885	0.520	0.592	1e-116
356565151	725	PREDICTED: uncharacterized protein LOC10	0.888	0.525	0.596	1e-114
224092528	642	predicted protein [Populus trichocarpa]	0.839	0.560	0.572	1e-103

>gi|224142491|ref|XP_002324590.1| predicted protein [Populus trichocarpa] gi|222866024|gb|EEF03155.1| predicted protein [Populus trichocarpa]

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/402 (66%), Positives = 317/402 (78%), Gaps = 9/402 (2%)

Query: 1   MGRNSGKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRD 60
           M + +GK KKQ+G QS     KQ KVG +SPK+ DKDT VFI MSQELKEEGNKLFQKRD
Sbjct: 1   MAKENGKNKKQVGRQSSENDMKQPKVGNNSPKALDKDTAVFISMSQELKEEGNKLFQKRD 60

Query: 61  HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120
           H GA+LKYEKA+ LLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL+LEVTP YSK
Sbjct: 61  HEGAMLKYEKAINLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLSLEVTPKYSK 120

Query: 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180
           ALLKRARCYEALNRLDLA RDV+TVL  EP N MA+EI+ERVKK +E++GLRVNDTVIEL
Sbjct: 121 ALLKRARCYEALNRLDLAMRDVSTVLKMEPNNFMASEISERVKKTIEQKGLRVNDTVIEL 180

Query: 181 PPEYVEPPVTS------IAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVD 234
           PPEYVEPPV S         K   +K ++KK + + EQK  G +VE +   ++IE  RVD
Sbjct: 181 PPEYVEPPVASSKLAKQKTKKKKGKKVEEKKTAGETEQKMVGDEVEGQNAGKEIEYSRVD 240

Query: 235 GRIEEKMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRF 294
            ++E K AEDKVVVEEK+  TE  EPKK+VKLVFGEDIR AQLP+N +LLQLREVI+DRF
Sbjct: 241 SQLEGKKAEDKVVVEEKLRKTE--EPKKSVKLVFGEDIRWAQLPINCNLLQLREVIADRF 298

Query: 295 PSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNE 354
           P    +LIKYRD EGDLVTIT+DEELR  EASAE Q SV+L++V  NP +DP ++R   E
Sbjct: 299 PGSEEILIKYRDHEGDLVTITSDEELRGVEASAETQVSVKLYLVEANPKKDPSFDRLTLE 358

Query: 355 KVNSLDIEQKY-FENGNVGNGKEADKGSCCIDDWIIEFAQLI 395
           +V+ LDI+QK   ENGN+ NGK ++  S C D+W++EFA+L 
Sbjct: 359 EVHKLDIKQKLATENGNMENGKLSENRSYCFDEWLVEFAKLF 400

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484683|ref|XP_002262977.2| PREDICTED: uncharacterized protein LOC100248831 [Vitis vinifera]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/423 (64%), Positives = 314/423 (74%), Gaps = 16/423 (3%)

Query: 1   MGRNSGKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRD 60
           MG+ S K K Q GG+   G  KQ KVG++  + YDKDT VFI MSQELKEEGNKLFQKRD
Sbjct: 1   MGKQSLKKKNQGGGKPGDGKVKQSKVGDNGARPYDKDTAVFIEMSQELKEEGNKLFQKRD 60

Query: 61  HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120
           H GA+LKYEKALKLLPRNH+DV+YLRSNMAACYMQMGLS+YPRAIHECNLALEV P YSK
Sbjct: 61  HEGAMLKYEKALKLLPRNHVDVAYLRSNMAACYMQMGLSDYPRAIHECNLALEVAPKYSK 120

Query: 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180
           ALLKRARCYEALNRLDLA RDVTT+LN EP N+MA EI E VKK +EK+G++VND    L
Sbjct: 121 ALLKRARCYEALNRLDLALRDVTTILNMEPNNLMALEIGESVKKAIEKKGIKVNDRATNL 180

Query: 181 PPEYVEPPVTSIAPKVVKEKTK-KKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRIEE 239
            PEY  P   S +PKVVK KT+ KK +  + ++ +  V VEEK+ +EK+        +EE
Sbjct: 181 APEYFVPS-ASTSPKVVKAKTQKKKSEKIEEKKAENKVVVEEKKAEEKV-------VMEE 232

Query: 240 KMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRA 299
           K AEDKVVVEEKI+  E+ EPKKTVKLVFGEDIR AQLP+N SL +LREVI DRFPS RA
Sbjct: 233 KKAEDKVVVEEKINRVEEEEPKKTVKLVFGEDIRRAQLPVNCSLSELREVIRDRFPSSRA 292

Query: 300 VLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNE-KVNS 358
           VLIKYRD+EGDLVTITT+EEL+ AEAS   QGS+RL+VV VNP QDP +ER  NE   N 
Sbjct: 293 VLIKYRDQEGDLVTITTNEELKLAEASVGTQGSIRLYVVEVNPEQDPFFERVMNEVDANK 352

Query: 359 LDIEQKYFE-NGNVGNGKEADKGSCCIDDWIIEFAQLIVQLGKHSHVQSKEGGLPHQRG- 416
           +D++Q     NG VG  KE   GS  IDDWII+FAQL      H    S E    H+ G 
Sbjct: 353 IDMKQNNGTLNGTVGKCKETGIGSSYIDDWIIQFAQL---FKNHVGFDSDEYLDLHEHGI 409

Query: 417 -FY 418
            FY
Sbjct: 410 KFY 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583090|ref|XP_002532312.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis] gi|223527981|gb|EEF30064.1| heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/402 (63%), Positives = 305/402 (75%), Gaps = 24/402 (5%)

Query: 1   MGRNSGKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRD 60
           MG+ SGK  KQ GGQS   + KQ KVG +SPK+ D+DT VFI M+QELKEEGNKLFQKRD
Sbjct: 1   MGKQSGK--KQTGGQSGDSNVKQNKVGNNSPKATDEDTLVFISMAQELKEEGNKLFQKRD 58

Query: 61  HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120
           + GA++KYEKA+KLLP+NHIDVSYLR+NMAACY+QMG +EYPRAIHECNLALEVTP Y K
Sbjct: 59  YEGAMMKYEKAIKLLPKNHIDVSYLRTNMAACYIQMGQTEYPRAIHECNLALEVTPKYGK 118

Query: 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180
           ALLKRARCYE LNRLDLA RDV+ VL  EP N++A E+ ERVK  LE++GLRVNDTVIEL
Sbjct: 119 ALLKRARCYEGLNRLDLALRDVSMVLKMEPNNVIAIEVLERVKNALEQKGLRVNDTVIEL 178

Query: 181 PPEYVEPPVTSIAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRIEEK 240
           PPEYVEPP TS              K  K + +K   K  EK+  ++I DK+VD +IEEK
Sbjct: 179 PPEYVEPPSTS--------------KPIKEKMRKKKSKKVEKKTGDEIVDKKVDDQIEEK 224

Query: 241 MAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAV 300
             +DKVVVEEKISS  + EPK++VKLVFGEDIR AQL  N S LQL+EVI+DRFPS  AV
Sbjct: 225 QTKDKVVVEEKISSGME-EPKRSVKLVFGEDIRWAQLSHNCSFLQLKEVIADRFPSSGAV 283

Query: 301 LIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLY------ERFKNE 354
           LIKYRD+EGDLVTIT+DEELR AEASAE Q S+RL++V VNP QDPL+       + +  
Sbjct: 284 LIKYRDQEGDLVTITSDEELRLAEASAESQASIRLYLVKVNPYQDPLFEKPKEEGKEEEG 343

Query: 355 KVNSLDIEQKY-FENGNVGNGKEADKGSCCIDDWIIEFAQLI 395
           +V  L + Q    ENGN+   K+ D GSC ID+WI+EFA+L 
Sbjct: 344 EVKKLVMRQNVATENGNMEEHKKPDDGSCHIDEWIVEFAKLF 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457955|ref|XP_004146713.1| PREDICTED: uncharacterized protein LOC101217675 [Cucumis sativus] gi|449522602|ref|XP_004168315.1| PREDICTED: uncharacterized LOC101217675 [Cucumis sativus]

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/386 (63%), Positives = 298/386 (77%), Gaps = 8/386 (2%)

Query: 12  IGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKA 71
           IG +      K  + G+ S  +YDKD  +FI MSQ LK+EGNKLFQ RD  GA+LKY+KA
Sbjct: 12  IGDKFREAIAKHRQNGDGSCPTYDKDHVIFITMSQVLKDEGNKLFQSRDLEGAMLKYDKA 71

Query: 72  LKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEA 131
           LKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP YSKALLKRARCYE 
Sbjct: 72  LKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYEG 131

Query: 132 LNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTS 191
           L+RLDLA RDV  VLN EP NIMA EI+ER+ KE+E +G   +D  I+LP ++ E P +S
Sbjct: 132 LHRLDLALRDVKAVLNMEPNNIMALEISERLTKEIEMKGSNEDDVEIKLPLDFGELP-SS 190

Query: 192 IAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRIEEKMAEDKVVVEEK 251
           ++P+   ++  +KKK+N+  ++     ++EK+VDE +E+K+VD  +EEK AEDK+VVEEK
Sbjct: 191 VSPQKKPKEKNRKKKNNQKTKE----IIDEKKVDETVEEKKVDEMVEEKKAEDKLVVEEK 246

Query: 252 ISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDL 311
           IS+ E+  P  TVKLVFGEDIR AQLP++ +LLQLREVI DRFP+C AVLIKYRDEEGDL
Sbjct: 247 ISTQEET-PTNTVKLVFGEDIRWAQLPVDCTLLQLREVIRDRFPTCTAVLIKYRDEEGDL 305

Query: 312 VTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNEKVNSLDIEQ-KYFENGN 370
           VTITT+EELR AE S E QGSVR ++  VNP QDP Y+RFKN++V   ++E+   FENG+
Sbjct: 306 VTITTNEELRLAETSKESQGSVRFYIFEVNPEQDPFYQRFKNDEVAKCEVEENSIFENGH 365

Query: 371 VGNGKEADKGSCCIDDWIIEFAQLIV 396
               KE  K S CIDDWII+FAQL +
Sbjct: 366 ALKSKEI-KMSSCIDDWIIQFAQLFI 390

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142515|ref|XP_002324602.1| predicted protein [Populus trichocarpa] gi|222866036|gb|EEF03167.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/336 (70%), Positives = 270/336 (80%), Gaps = 8/336 (2%)

Query: 1   MGRNSGKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRD 60
           M + +GK KKQ+G QS     KQ KVG +SPK+ DKDT VFI MSQELKEEGNKLFQKRD
Sbjct: 1   MAKENGKNKKQVGRQSSENDMKQPKVGNNSPKALDKDTAVFISMSQELKEEGNKLFQKRD 60

Query: 61  HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120
           H GA+LKYEKA+ LLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL+LEVTP YSK
Sbjct: 61  HEGAMLKYEKAINLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLSLEVTPKYSK 120

Query: 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180
           ALLKRARCYEALNRLDLA RDV+TVL  EP N MA+EI+ERVKK +E++GLRVNDTVIEL
Sbjct: 121 ALLKRARCYEALNRLDLAMRDVSTVLKMEPNNFMASEISERVKKTIEQKGLRVNDTVIEL 180

Query: 181 PPEYVEPPVTS------IAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVD 234
           PPEYVEPPV S         K   +K ++KK + + EQK  G +VE +   ++IE  RVD
Sbjct: 181 PPEYVEPPVASSKLAKQKTKKKKGKKVEEKKTAGETEQKMVGDEVEGQNAGKEIEYSRVD 240

Query: 235 GRIEEKMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRF 294
            ++E K AEDKVVVEEK+  TE  EPKK+VKLVFGEDIR AQLP+N +LLQLREVI+DRF
Sbjct: 241 SQLEGKKAEDKVVVEEKLRKTE--EPKKSVKLVFGEDIRWAQLPINCNLLQLREVIADRF 298

Query: 295 PSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQ 330
           P    +LIKYRD EGDLVTIT+DEELR  EASAE Q
Sbjct: 299 PGSEEILIKYRDHEGDLVTITSDEELRGVEASAETQ 334

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546140|ref|XP_003541489.1| PREDICTED: uncharacterized protein LOC100807387 [Glycine max]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/409 (58%), Positives = 300/409 (73%), Gaps = 29/409 (7%)

Query: 6   GKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGAL 65
           GK KKQ+G     G     KVG+ SP++YD DT VFI MSQELK EGNKLFQKRD  G++
Sbjct: 2   GKKKKQVGEIGEDG-----KVGDSSPRAYDNDTMVFISMSQELKNEGNKLFQKRDLEGSI 56

Query: 66  LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125
           LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE+PRAIHEC+LAL+VTP YSKALLKR
Sbjct: 57  LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEFPRAIHECDLALQVTPKYSKALLKR 116

Query: 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYV 185
           ARCYEALNRLDLA RD +TV+  EP N+MA EI+E+VK  LE++GLRV+++VIELPP+YV
Sbjct: 117 ARCYEALNRLDLALRDASTVVKMEPNNVMALEISEKVKNALEEKGLRVSNSVIELPPDYV 176

Query: 186 EPPVTSIAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRI-------- 237
           EPP      K +KEKT+KKK S + E+   G K+ EK+ +EK EDK+ +G I        
Sbjct: 177 EPPNALPPEKALKEKTRKKKSSKEEEKAPDG-KIPEKQTEEKFEDKKAEGSIVVVEKKIN 235

Query: 238 -----------EEKMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQL 286
                      +EK A+ K V+EE+ +   +  PKKT KL+FG+DIR A+LP+N SL QL
Sbjct: 236 TPKKKKAKVKVDEKKADIKEVIEERSNGRREPVPKKTAKLIFGDDIRYAELPINCSLFQL 295

Query: 287 REVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDP 346
           REVI DRFP   AVL+KYRD+EGDLVT+T+D+ELRWAE  +   GS+RL++V   P QDP
Sbjct: 296 REVIHDRFPRLGAVLVKYRDQEGDLVTVTSDDELRWAETGS--NGSIRLYIVEATPEQDP 353

Query: 347 LYERFKNEKVNSLDIEQKYFENGNVGNGKEADKGSCCIDDWIIEFAQLI 395
           L+E+FK ++   + I   + ++G VG  KE    S CI+DWII+FA+L 
Sbjct: 354 LFEKFKVKEAEVVGINIAH-KSGCVGKAKEI-VSSSCIEDWIIQFAKLF 400

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084546|emb|CBI25567.3| unnamed protein product [Vitis vinifera]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/422 (58%), Positives = 274/422 (64%), Gaps = 68/422 (16%)

Query: 1   MGRNSGKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRD 60
           MG+ S K K Q GG+   G  KQ KVG++  + YDKDT VFI MSQELKEEGNKLFQKRD
Sbjct: 1   MGKQSLKKKNQGGGKPGDGKVKQSKVGDNGARPYDKDTAVFIEMSQELKEEGNKLFQKRD 60

Query: 61  HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK 120
           H GA+LKYEKALKLLPRNH+DV+YLRSNMAACYMQMGLS+YPRAIHECNLALEV P YSK
Sbjct: 61  HEGAMLKYEKALKLLPRNHVDVAYLRSNMAACYMQMGLSDYPRAIHECNLALEVAPKYSK 120

Query: 121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL 180
           ALLKRARCYEALNRLDLA RDVTT+LN EP N+MA EI E VKK +EK+G++VND    L
Sbjct: 121 ALLKRARCYEALNRLDLALRDVTTILNMEPNNLMALEIGESVKKAIEKKGIKVNDRATNL 180

Query: 181 PPEYVEPPVTSIAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRIEEK 240
            PEY                         V    T  KVEE                   
Sbjct: 181 APEYF------------------------VPSASTSPKVEE------------------- 197

Query: 241 MAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAV 300
                             EPKKTVKLVFGEDIR AQLP+N SL +LREVI DRFPS RAV
Sbjct: 198 ------------------EPKKTVKLVFGEDIRRAQLPVNCSLSELREVIRDRFPSSRAV 239

Query: 301 LIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDPLYERFKNE-KVNSL 359
           LIKYRD+EGDLVTITT+EEL+ AEAS   QGS+RL+VV VNP QDP +ER  NE   N +
Sbjct: 240 LIKYRDQEGDLVTITTNEELKLAEASVGTQGSIRLYVVEVNPEQDPFFERVMNEVDANKI 299

Query: 360 DIEQKYFE-NGNVGNGKEADKGSCCIDDWIIEFAQLIVQLGKHSHVQSKEGGLPHQRG-- 416
           D++Q     NG VG  KE   GS  IDDWII+FAQL      H    S E    H+ G  
Sbjct: 300 DMKQNNGTLNGTVGKCKETGIGSSYIDDWIIQFAQL---FKNHVGFDSDEYLDLHEHGIK 356

Query: 417 FY 418
           FY
Sbjct: 357 FY 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532968|ref|XP_003535041.1| PREDICTED: uncharacterized protein LOC100820306 [Glycine max]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/417 (59%), Positives = 296/417 (70%), Gaps = 37/417 (8%)

Query: 6   GKTKKQIGGQSVG-GSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGA 64
           GK KKQ+G  S   G+ K  KV + SP SYD DT  FI M+QELK+EGNK FQKRD  GA
Sbjct: 2   GKKKKQVGETSEDRGNHK--KVEDKSPNSYDNDTLAFISMAQELKDEGNKFFQKRDAEGA 59

Query: 65  LLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK 124
           L+KYEKALKLLPRNH+DVSYLRSNMAACYMQMGL EYPRAI ECNLALEV+P YSKAL+K
Sbjct: 60  LVKYEKALKLLPRNHVDVSYLRSNMAACYMQMGLGEYPRAIRECNLALEVSPKYSKALMK 119

Query: 125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEY 184
           RARC+EALNRLDLA +D++ VL  EP NIMA E+  +VK  LE RGL VNDT IELPP+Y
Sbjct: 120 RARCHEALNRLDLALKDLSAVLKIEPNNIMALEVLGKVKHALEDRGLIVNDTEIELPPDY 179

Query: 185 VEPPVTSIAPKVVKEKTKKKKK-------SNKVEQKKTGVKVEEKEVDEKIEDKRVDG-- 235
           VEPP   +  KVVK+KT KKK+       S+K+E+K+   K+EEK+ ++ I  K+  G  
Sbjct: 180 VEPPALPL-EKVVKQKTHKKKRNKEKVKASDKIEEKQAEEKLEEKKSEDSIVIKKAGGSL 238

Query: 236 --------------RIEEKMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNS 281
                         RI+EK  + K V+EEK +   ++ PKKT KL+FGEDIR A+LPLN 
Sbjct: 239 KEKKANKSKKKAKERIDEKKDDVKEVIEEKSNGRSEDIPKKTAKLIFGEDIRWAELPLNC 298

Query: 282 SLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVN 341
           SLLQLREVI DRFP   AVL+KYRD+EGDLVTIT+DEELRWAE  +  QGS+RL++V  N
Sbjct: 299 SLLQLREVICDRFPRLGAVLVKYRDQEGDLVTITSDEELRWAETGS--QGSIRLYIVEAN 356

Query: 342 PLQDPLYERF---KNEKVNSLDIEQKYFENGNVGNGKEADKGSCCIDDWIIEFAQLI 395
           P  DPL+E+F     EKVN+         NG+V   K+    S CI+DWII FAQL 
Sbjct: 357 PDHDPLFEKFNVKNGEKVNTYSSPV----NGSVVKAKDI-ISSSCIEDWIILFAQLF 408

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565151|ref|XP_003550808.1| PREDICTED: uncharacterized protein LOC100778972 [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 244/409 (59%), Positives = 299/409 (73%), Gaps = 28/409 (6%)

Query: 6   GKTKKQIGGQSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGAL 65
           GK KKQ+G     G     KVG+ SP++YD DT VFI MSQELK EGNKLFQKRD  GA+
Sbjct: 2   GKKKKQVGEIEEDG-----KVGDSSPRAYDNDTMVFISMSQELKNEGNKLFQKRDLEGAI 56

Query: 66  LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR 125
           LKYE ALKLLP+NHIDVSYLRSNMAACYMQMGLSE+PRAIHEC+LAL+VTP YSKALLKR
Sbjct: 57  LKYENALKLLPKNHIDVSYLRSNMAACYMQMGLSEFPRAIHECDLALQVTPKYSKALLKR 116

Query: 126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYV 185
           ARCYEALNR DLA RD +TV+  EP N+MA EI+E+VK  LE++GLRVNDT+IELPP+YV
Sbjct: 117 ARCYEALNRPDLALRDASTVVKMEPNNVMALEISEKVKSALEEKGLRVNDTIIELPPDYV 176

Query: 186 EPPVTSIAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRI-------- 237
           EPP      KV KEK +KKKKSNK E+K    K+ EK+ +EK E+K+ +G I        
Sbjct: 177 EPPDALPPEKVSKEKRRKKKKSNKEEEKAPDDKILEKQTEEKFEEKKAEGSIVVVEKKIN 236

Query: 238 -----------EEKMAEDKVVVEEKISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQL 286
                       EK  + K V+EE+ +   ++ PKK+ K +FG+DIR A+LP+N SL QL
Sbjct: 237 TSKKKKAKGKTNEKKTDIKEVIEERSNGRRNHVPKKSAKFIFGDDIRCAELPINCSLFQL 296

Query: 287 REVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQDP 346
           REVI DRFPS  AVL+KYRD+EGDLVTIT+D+ELRWAEA +   GS+RL++V   P QDP
Sbjct: 297 REVIQDRFPSLGAVLVKYRDQEGDLVTITSDDELRWAEAGS--NGSIRLYIVEATPEQDP 354

Query: 347 LYERFKNEKVNSLDIEQKYFENGNVGNGKEADKGSCCIDDWIIEFAQLI 395
           L+E+FK ++V  + +     ENG VG  KE    S CI+DWII+F++L 
Sbjct: 355 LFEKFKVKEVEVVGVNIAP-ENGCVGKAKEI-ISSSCIEDWIIQFSKLF 401

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092528|ref|XP_002309647.1| predicted protein [Populus trichocarpa] gi|222855623|gb|EEE93170.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/370 (57%), Positives = 267/370 (72%), Gaps = 10/370 (2%)

Query: 35  DKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYM 94
           D+DT +FI MSQELKEEGNKLFQ+RDH GA+LKYEKALKLLPRNHIDV+YLR+NMAACYM
Sbjct: 1   DEDTAIFINMSQELKEEGNKLFQRRDHEGAMLKYEKALKLLPRNHIDVAYLRTNMAACYM 60

Query: 95  QMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154
           QMGL EYPRAI ECNLALEV P YSKALLKRARCYEALNRLDLAFRDV  VL+ EP N+ 
Sbjct: 61  QMGLGEYPRAIIECNLALEVVPKYSKALLKRARCYEALNRLDLAFRDVNNVLSMEPNNMT 120

Query: 155 AAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKEKTKKKKKSNKVEQKK 214
             EI E VKK + ++G+  ++ +I L     E  V  +   V ++  KKKK S K E+KK
Sbjct: 121 GLEILESVKKAMSEKGISFDEKLIGL-DNVDETGVARLRKVVKEKVKKKKKISGKGEEKK 179

Query: 215 TGVKVEEKEVDEK----IEDKRVDGRIEEKMAEDKVVVEEKISSTEDNEPK---KTVKLV 267
            G KVEEK+V+ K    + +K+V   +++K    K + EEK+ + +  E K   KTVKLV
Sbjct: 180 IGGKVEEKKVENKDKVVVREKKVSPVVKDKEVVMKTIEEEKVVTKDVKEEKVIDKTVKLV 239

Query: 268 FGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA 327
           FGEDIR+A+LP N S+  LR+++ DRFP    VL+KYRD EGDL+TITT++ELR AE+S+
Sbjct: 240 FGEDIRMARLPANCSIGLLRDIVRDRFPGLNGVLMKYRDPEGDLITITTNDELRLAESSS 299

Query: 328 EMQGSVRLFVVGVNPLQDPLYERFKNEKVNSLDIEQK--YFENGNVGNGKEADKGSCCID 385
             QGS+R +VV V+  Q+P YE  + E+    D ++     ENGNVG   E +KGS  ID
Sbjct: 300 GAQGSLRFYVVEVSLDQEPAYEGMEIEEEVHEDAKKTSDVVENGNVGKSVEVEKGSNRID 359

Query: 386 DWIIEFAQLI 395
           DWI++FA+L 
Sbjct: 360 DWIVQFARLF 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	429
TAIR|locus:2059546	745	Phox1 "Phox1" [Arabidopsis tha	0.403	0.232	0.551	3.5e-79
TAIR|locus:2116677	811	Phox4 "Phox4" [Arabidopsis tha	0.403	0.213	0.540	6.3e-78
TAIR|locus:2149174	809	Phox3 "Phox3" [Arabidopsis tha	0.340	0.180	0.582	1.6e-77
TAIR|locus:2027104	751	Phox2 "Phox2" [Arabidopsis tha	0.386	0.221	0.372	9.7e-47
UNIPROTKB|Q3ZBR5	292	TTC1 "Tetratricopeptide repeat	0.307	0.452	0.340	2.1e-12
MGI|MGI:1914077	292	Ttc1 "tetratricopeptide repeat	0.307	0.452	0.340	2.8e-12
UNIPROTKB|Q99614	292	TTC1 "Tetratricopeptide repeat	0.307	0.452	0.333	4.9e-12
UNIPROTKB|F1RR38	292	TTC1 "Uncharacterized protein"	0.307	0.452	0.340	4.9e-12
RGD|1359604	292	Ttc1 "tetratricopeptide repeat	0.307	0.452	0.325	2.1e-11
UNIPROTKB|E1BWM0	296	TTC1 "Uncharacterized protein"	0.307	0.445	0.318	8.9e-11

TAIR|locus:2059546 Phox1 "Phox1" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 3.5e-79, Sum P(2) = 3.5e-79
 Identities = 96/174 (55%), Positives = 119/174 (68%)

Query:     3 RNSGKTKKQIGGQSVGGSPKQIKVGEHSP-KSYDKDTEVFIGMSQELKEEGNKLFQKRDH 61
             +N+  T+      S  G  K  K  + S  KS+D D  +FI  + ELKEEGNKLFQKRD+
Sbjct:     9 KNNNYTEMPPTESSTTGGGKTGKSFDRSATKSFDDDMTIFINRALELKEEGNKLFQKRDY 68

Query:    62 GGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA 121
              G            PR+H DV+YLR++MA+CYMQMGL EYP AI+ECNLALE +P +SKA
Sbjct:    69 EGAMFRYDKAVKLLPRDHGDVAYLRTSMASCYMQMGLGEYPNAINECNLALEASPRFSKA 128

Query:   122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND 175
             LLKRARCYEALN+LD AFRD   VLN EP+N+ A EI ERVKK L  +G+ V++
Sbjct:   129 LLKRARCYEALNKLDFAFRDSRVVLNMEPENVSANEIFERVKKVLVGKGIDVDE 182

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116677 Phox4 "Phox4" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 6.3e-78, Sum P(2) = 6.3e-78
 Identities = 94/174 (54%), Positives = 119/174 (68%)

Query:     3 RNSGKTKKQIGGQSVGGSPKQIKVGEHSP-KSYDKDTEVFIGMSQELKEEGNKLFQKRDH 61
             + + +T K   G   GG  K  K    S  + +D+D E+FI  + ELKEEGNKLFQKRDH
Sbjct:     8 KKNPETPKDASGGGGGGGGKSGKTYHRSTSRVFDEDMEIFISRALELKEEGNKLFQKRDH 67

Query:    62 GGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA 121
              G            P++HIDV+YLR++MA+CYMQMGL EYP AI ECNLALE +P YSKA
Sbjct:    68 EGAMLSFDKALKLLPKDHIDVAYLRTSMASCYMQMGLGEYPNAISECNLALEASPRYSKA 127

Query:   122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND 175
             L++R+RCYEALN+LD AFRD   VLN EP N+ A EI +RVKK L  +G+ V++
Sbjct:   128 LVRRSRCYEALNKLDYAFRDARIVLNMEPGNVSANEIFDRVKKVLVDKGIDVDE 181

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2149174 Phox3 "Phox3" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 1.6e-77, Sum P(2) = 1.6e-77
 Identities = 85/146 (58%), Positives = 114/146 (78%)

Query:    42 IGMSQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEY 101
             +  +Q LKEEGNKLFQKRD+ G            P++H++VS++R+N+A+CYMQ+   E+
Sbjct:   123 VSKAQGLKEEGNKLFQKRDYDGAMFKYGEAIKILPKDHVEVSHVRANVASCYMQLEPGEF 182

Query:   102 PRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161
              +AIHEC+LAL VTP ++KALLKRARCYEALN+LDLA RDV  V   +PKN MA+EI E+
Sbjct:   183 AKAIHECDLALSVTPDHNKALLKRARCYEALNKLDLALRDVCMVSKLDPKNPMASEIVEK 242

Query:   162 VKKELEKRGLRVNDTVIELPPEYVEP 187
             +K+ LE +GLR+N++VIELPP+YVEP
Sbjct:   243 LKRTLESKGLRINNSVIELPPDYVEP 268

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2027104 Phox2 "Phox2" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 9.7e-47, Sum P(3) = 9.7e-47
 Identities = 64/172 (37%), Positives = 94/172 (54%)

Query:     1 MGRNSGKTKKQIGGQSVGGSPKQIKV-GEHSPKSY-----DKDTEVFIGMSQELKEEGNK 54
             MG++ G+ KK  G  S        +  G   P +      D D  +F+  + ELKEEGNK
Sbjct:     1 MGKSGGRKKKSGGSNSNSSQVNSSETSGLSKPSTIVNGGVDFDASIFLKRAHELKEEGNK 60

Query:    55 LFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV 114
              FQ RD+ G            P++H D +   SN AAC MQM   +Y   I EC++AL+ 
Sbjct:    61 KFQARDYVGALEQYENGIKLIPKSHPDRAVFHSNRAACLMQMKPIDYESVISECSMALKS 120

Query:   115 TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166
              P +++ALL+RAR +EA+ + DLA +DV  +L  +P +  A EI++R+K  L
Sbjct:   121 QPGFTRALLRRARAFEAVGKFDLAVQDVNVLLGSDPNHKDAGEISKRLKTAL 172

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q3ZBR5 TTC1 "Tetratricopeptide repeat protein 1" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 46/135 (34%), Positives = 71/135 (52%)

Query:    45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRN-HIDVSYLRSNMAACYMQMGLSEYPR 103
             S  LKEEGN+ F+K D+              P     D S L SN AA  M+    E   
Sbjct:   116 SSRLKEEGNEQFKKGDYIEAESSYTRALQTCPSCFQKDRSVLFSNRAAARMKQEKKEM-- 173

Query:   104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
             AI +C+ A+++ P Y +A+L+RA  YE  ++LD A  D  ++L K+P    A E   R+ 
Sbjct:   174 AISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLP 233

Query:   164 KELEKRGLRVNDTVI 178
             K++E+R  R+ + ++
Sbjct:   234 KQIEERNERLKEEML 248

GO:0005778 "peroxisomal membrane" evidence=IEA

MGI|MGI:1914077 Ttc1 "tetratricopeptide repeat domain 1" [Mus musculus (taxid:10090)]

 Score = 185 (70.2 bits), Expect = 2.8e-12, P = 2.8e-12
 Identities = 46/135 (34%), Positives = 72/135 (53%)

Query:    45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRN-HIDVSYLRSNMAACYMQMGLSEYPR 103
             S +LKEEGN+ F++ D+              P     D S L SN AA  M+    E   
Sbjct:   116 SAKLKEEGNERFKRGDYMEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKE--T 173

Query:   104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
             AI +C+ A+++ P Y +A+L+RA  YE  ++LD A  D  +VL K+P    A E   R+ 
Sbjct:   174 AITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRLP 233

Query:   164 KELEKRGLRVNDTVI 178
             K++E+R  R+ + ++
Sbjct:   234 KQIEERNERLKEEML 248

GO:0003674 "molecular_function" evidence=ND

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q99614 TTC1 "Tetratricopeptide repeat protein 1" [Homo sapiens (taxid:9606)]

 Score = 183 (69.5 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 45/135 (33%), Positives = 72/135 (53%)

Query:    45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRN-HIDVSYLRSNMAACYMQMGLSEYPR 103
             S  LKEEGN+ F+K D+              P     + S L SN AA  M+    E   
Sbjct:   116 STRLKEEGNEQFKKGDYIEAESSYSRALEMCPSCFQKERSILFSNRAAARMKQDKKEM-- 173

Query:   104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
             AI++C+ A+++ P Y +A+L+RA  YE  ++LD A  D  ++L K+P    A E   R+ 
Sbjct:   174 AINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLP 233

Query:   164 KELEKRGLRVNDTVI 178
             K++E+R  R+ + ++
Sbjct:   234 KQIEERNERLKEEML 248

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0006457 "protein folding" evidence=NAS

GO:0051082 "unfolded protein binding" evidence=NAS

UNIPROTKB|F1RR38 TTC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 183 (69.5 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 46/135 (34%), Positives = 70/135 (51%)

Query:    45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRN-HIDVSYLRSNMAACYMQMGLSEYPR 103
             S  LKEEGN+ F+K D+              P     D S L SN AA  M+    E   
Sbjct:   116 SSRLKEEGNEQFKKGDYIEAESSYTRALQMCPSCFQKDRSILFSNRAAARMKQDKKEM-- 173

Query:   104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
             AI +C+ A+++ P Y +A+L+RA  YE  ++LD A  D  ++L K+P    A E   R+ 
Sbjct:   174 AISDCSKAIQLNPNYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLP 233

Query:   164 KELEKRGLRVNDTVI 178
             K++E R  R+ + ++
Sbjct:   234 KQIEDRNERLKEEML 248

GO:0005778 "peroxisomal membrane" evidence=IEA

RGD|1359604 Ttc1 "tetratricopeptide repeat domain 1" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 44/135 (32%), Positives = 71/135 (52%)

Query:    45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRN-HIDVSYLRSNMAACYMQMGLSEYPR 103
             S +LKEEGN+ F++ D+              P     D S L SN AA  M+    E   
Sbjct:   116 SAKLKEEGNEQFKRGDYVEAESSYSQALQMCPACFQKDRSVLFSNRAAARMKQDKKEM-- 173

Query:   104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
             AI +C+ A+++ P Y +A+L+RA  YE  ++LD A  D  ++L  +P    A E   R+ 
Sbjct:   174 AITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSILETDPSVHQAREACVRLP 233

Query:   164 KELEKRGLRVNDTVI 178
             K++E+R  R+ + ++
Sbjct:   234 KQIEERNERLKEEML 248

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IEA;ISO

UNIPROTKB|E1BWM0 TTC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 173 (66.0 bits), Expect = 8.9e-11, P = 8.9e-11
 Identities = 43/135 (31%), Positives = 71/135 (52%)

Query:    45 SQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRN-HIDVSYLRSNMAACYMQMGLSEYPR 103
             S  LKE+GN+ F+K D+G             P     D + L SN AA  M+   +E   
Sbjct:   120 STTLKEKGNEQFKKGDYGEAEDSYTKALQICPACFQKDRAVLFSNRAAAKMKQDKTE--A 177

Query:   104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
             A+++C+ A+E+ P Y +ALL+RA  +E   +LD A  D   +L K+P    A E   R+ 
Sbjct:   178 ALNDCSKAVELDPNYIRALLRRAELHEKTEKLDEALEDYKAILEKDPSVHQAREACMRLP 237

Query:   164 KELEKRGLRVNDTVI 178
             +++E+R  ++   ++
Sbjct:   238 RQIEERNEKLKKEML 252

GO:0005778 "peroxisomal membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0020037901 hypothetical protein (674 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	429
smart00666	81	smart00666, PB1, PB1 domain	8e-16
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-15
pfam00564	84	pfam00564, PB1, PB1 domain	1e-14
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-12
cd05992	81	cd05992, PB1, The PB1 domain is a modular domain m	6e-12
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	4e-10
cd06401	81	cd06401, PB1_TFG, The PB1 domain found in TFG prot	2e-06
cd06402	87	cd06402, PB1_p62, The PB1 domain is an essential p	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	9e-06
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	8e-05
cd06407	82	cd06407, PB1_NLP, A PB1 domain is present in NIN l	1e-04
cd06404	83	cd06404, PB1_aPKC, PB1 domain is an essential modu	4e-04
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	8e-04

>gnl|CDD|214770 smart00666, PB1, PB1 domain

 Score = 71.8 bits (177), Expect = 8e-16
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 263 TVKLVFGEDIRVAQLPLNSSLLQLREVISDRFP-SCRAVLIKYRDEEGDLVTITTDEELR 321
            VKL +G + R   +P + S   LR  ++ RF    ++  +KY+DE+GDLV++T+DE+L 
Sbjct: 3   DVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLE 62

Query: 322 --WAEASAEMQGSVRLFVV 338
               E  +     +RL V 
Sbjct: 63  EAIEEYDSLGSKKLRLHVF 81

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. Length = 81

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 70.9 bits (174), Expect = 3e-15
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
           + L   GN  ++  D+  AL  YEKAL+L P N         N+AA Y ++G  +Y  A+
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD----AYYNLAAAYYKLG--KYEEAL 54

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151
            +   ALE+ P  +KA       Y  L + + A       L  +P 
Sbjct: 55  EDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215996 pfam00564, PB1, PB1 domain

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 263 TVKLVFGEDI-RVAQLPLNSSLLQLREVISDRFPSCRA-VLIKYRDEEGDLVTITTDEEL 320
            VKL +G  I R   +    S  +LR  +  RF   R    +KY DE+GDLV+IT+DE+L
Sbjct: 3   RVKLRYGGGIRRFLSVSPGISFEELRSKVEQRFGLDRVDFKLKYPDEDGDLVSITSDEDL 62

Query: 321 R--WAEASAEMQGSVRLFVVGV 340
                EA +    ++RL V   
Sbjct: 63  EEAIEEARSLGSKTLRLHVFPA 84

Length = 84

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           ++ LK  GN LF+  D+  A+  YEKAL+L P N         N+A  Y+++G  +Y  A
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNA----EAYYNLALAYLKLG-KDYEEA 57

Query: 105 IHECNLALEVTP 116
           + +   ALE+ P
Sbjct: 58  LEDLEKALELDP 69

Length = 69

>gnl|CDD|99716 cd05992, PB1, The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

 Score = 60.8 bits (148), Expect = 6e-12
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 263 TVKLVFGEDIRVAQLPL-NSSLLQLREVISDRFPSCR-AVLIKYRDEEGDLVTITTDEEL 320
            VK+ +G +IR   +   + S   LR  I+++F     +  +KY DE+GDLVTI++DE+L
Sbjct: 2   RVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDL 61

Query: 321 R--WAEASAEMQGSVRLFV 337
                EA       +RLFV
Sbjct: 62  EEAIEEARRSGSKKLRLFV 80

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 81

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 47/147 (31%), Positives = 76/147 (51%), Gaps = 12/147 (8%)

Query: 48  LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHE 107
           LKE+GNK ++ +D   A+  Y KA++  P    D  Y  SN AAC+    L ++ + + +
Sbjct: 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKP----DPVYY-SNRAACHN--ALGDWEKVVED 182

Query: 108 CNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV-LNKEPKNIMAAEIAERVKKEL 166
              ALE+ P YSKAL +RA  Y+ L +   A  D+T   +    +N    + A+ V++ L
Sbjct: 183 TTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN---EQSAQAVERLL 239

Query: 167 EKRGLRVNDTVIELPPEYVEPPVTSIA 193
           +K        ++E  PE + P VT + 
Sbjct: 240 KKFAESKAKEILETKPENL-PSVTFVG 265

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|99722 cd06401, PB1_TFG, The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 264 VKLVFGEDIRVA-----QLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDE 318
           +K   G+DIR        +  +  LL ++ V   +  S   VLIKY+DE+GDL+TI    
Sbjct: 3   LKAQLGDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSS 62

Query: 319 ELRWAEASAEMQGSVRLFV 337
           +L +A   + +   + LFV
Sbjct: 63  DLSFAIQCSRIL-KLTLFV 80

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown. Length = 81

>gnl|CDD|99723 cd06402, PB1_p62, The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 270 EDIR--VAQLPLNSSLLQLREVISDRFPSCR--AVLIKYRDEEGDLVTITTDEELRWAEA 325
            +IR       +++S   L E ++  FPS R     + ++DEEGDLV  ++DEEL    A
Sbjct: 14  AEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEEL--VMA 71

Query: 326 SAEMQGSV-RLFV 337
              +     R+++
Sbjct: 72  LGSLNDDTFRIYI 84

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 87

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 88  NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
           N+   Y ++G  +Y  A+     ALE+ P  + A    A  Y  L + + A  D    L 
Sbjct: 5   NLGNLYYKLG--DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 148 KEPKNIMA 155
            +P N  A
Sbjct: 63  LDPDNAKA 70

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 5/126 (3%)

Query: 44  MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPR 103
           +++ L   G  L     +  AL   EKALKL P +  +      N+   Y+++G  +Y  
Sbjct: 166 LAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL---NLGLLYLKLG--KYEE 220

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
           A+     ALE+ P  ++AL   A     L R + A   +   L  +P           + 
Sbjct: 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLALLLLL 280

Query: 164 KELEKR 169
            E  + 
Sbjct: 281 AEALEL 286

Length = 291

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 81  DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN-RLDLAF 139
           D +    N+     ++G  +Y  AI     ALE+ P  ++A    A  Y  L    + A 
Sbjct: 1   DNAEALKNLGNALFKLG--DYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEAL 58

Query: 140 RDVTTVLNKEP 150
            D+   L  +P
Sbjct: 59  EDLEKALELDP 69

Length = 69

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)

Query: 79  HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-------PLYSKALLKRARCYEA 131
           H D++   +N+A    ++G  +Y  A+     ALE+        P  ++AL   AR Y A
Sbjct: 1   HPDLAAALNNLALVLRRLG--DYDEALELLEKALELARELGEDHPETARALNNLARLYLA 58

Query: 132 LNRLDLA 138
           L   D A
Sbjct: 59  LGDYDEA 65

Length = 78

>gnl|CDD|99728 cd06407, PB1_NLP, A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 263 TVKLVFGEDIRVAQLPLNSSLLQLREVISDRF--PSCRAVLIKYRDEEGDLVTITTDEEL 320
            VK  +GE+    +LP +    +L++ I+ RF      A  +KY D++ + V +T D +L
Sbjct: 2   RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADL 61

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. Length = 82

>gnl|CDD|99725 cd06404, PB1_aPKC, PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 6/81 (7%)

Query: 263 TVKLVFGEDIRVAQLPLNSSLLQLREVISD--RFPSCRAVLIKYRDEEGDLVTITTDEEL 320
            VK  +  DI +  +  + SL +L   + D  RF + +   +K+ DEEGD  TI++  EL
Sbjct: 2   RVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMEL 61

Query: 321 ----RWAEASAEMQGSVRLFV 337
               R  E + + + ++ +F 
Sbjct: 62  EEAFRLYELNKDSELNIHVFP 82

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The aPKC protein contains a type I/II PB1 domain. Length = 83

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 67  KYEKALK----LLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122
           +Y++ALK    L   +  +  Y    +AAC   +   EY  AI    LA  + P   +  
Sbjct: 32  RYDEALKLFQLLAAYDPYNSRYWLG-LAACCQMLK--EYEEAIDAYALAAALDPDDPRPY 88

Query: 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE 167
              A C  AL   + A + +   +    +N   +E+ ER +  LE
Sbjct: 89  FHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAMLE 133

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	429
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	99.97
KOG0553	304	consensus TPR repeat-containing protein [General f	99.86
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	99.85
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	99.83
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	99.81
KOG4234	271	consensus TPR repeat-containing protein [General f	99.76
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	99.74
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	99.73
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	99.72
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.71
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	99.69
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	99.67
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	99.67
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	99.67
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.66
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.64
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.62
PRK15359	144	type III secretion system chaperone protein SscB;	99.61
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.59
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.52
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.46
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.46
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.44
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.41
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.4
PRK11189	296	lipoprotein NlpI; Provisional	99.4
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.39
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.36
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	99.36
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.35
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.34
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.33
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.29
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	99.24
KOG1126	638	consensus DNA-binding cell division cycle control	99.23
PRK15359	144	type III secretion system chaperone protein SscB;	99.22
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.22
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	99.21
PRK12370	553	invasion protein regulator; Provisional	99.19
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.19
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.18
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.18
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.16
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.16
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.16
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.15
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.13
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.13
PRK11189	296	lipoprotein NlpI; Provisional	99.12
PRK12370	553	invasion protein regulator; Provisional	99.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.11
KOG1126	638	consensus DNA-binding cell division cycle control	99.11
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.1
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.1
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.09
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.08
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.07
KOG1125	579	consensus TPR repeat-containing protein [General f	99.06
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.04
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.04
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.03
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.03
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.03
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.02
PLN02789	320	farnesyltranstransferase	99.01
PRK10803	263	tol-pal system protein YbgF; Provisional	98.99
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.99
PRK15331	165	chaperone protein SicA; Provisional	98.96
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	98.92
PLN02789	320	farnesyltranstransferase	98.92
KOG2076	895	consensus RNA polymerase III transcription factor	98.92
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.91
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.9
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.9
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.85
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.83
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.8
PF13512	142	TPR_18: Tetratricopeptide repeat	98.8
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.78
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.78
PF13371	73	TPR_9: Tetratricopeptide repeat	98.78
KOG0553	304	consensus TPR repeat-containing protein [General f	98.76
KOG4555	175	consensus TPR repeat-containing protein [Function	98.76
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.75
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.72
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.72
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.69
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.69
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.69
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.68
KOG1125	579	consensus TPR repeat-containing protein [General f	98.68
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.67
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	98.67
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.67
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.66
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.65
PF13371	73	TPR_9: Tetratricopeptide repeat	98.64
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.63
PRK14574	822	hmsH outer membrane protein; Provisional	98.63
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.6
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.58
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.58
KOG2003	840	consensus TPR repeat-containing protein [General f	98.58
PF12688	120	TPR_5: Tetratrico peptide repeat	98.56
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.56
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.55
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.52
KOG2003	840	consensus TPR repeat-containing protein [General f	98.5
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.5
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.5
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.49
PRK11906	458	transcriptional regulator; Provisional	98.47
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.47
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.45
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.45
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.45
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.45
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.45
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	98.43
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.43
cd06395	91	PB1_Map2k5 PB1 domain is essential part of the mit	98.43
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.41
KOG1310	758	consensus WD40 repeat protein [General function pr	98.4
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.4
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.37
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.36
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.35
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.34
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.34
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.31
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.31
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.3
PRK14574	822	hmsH outer membrane protein; Provisional	98.3
KOG2076	895	consensus RNA polymerase III transcription factor	98.29
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.29
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.25
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.25
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.24
KOG1129	478	consensus TPR repeat-containing protein [General f	98.24
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.21
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.21
KOG0695	593	consensus Serine/threonine protein kinase [Signal	98.15
cd06399	92	PB1_P40 The PB1 domain is essential part of the p4	98.14
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.06
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.05
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.04
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.04
PRK11906	458	transcriptional regulator; Provisional	98.02
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.01
PF12688	120	TPR_5: Tetratrico peptide repeat	97.99
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.98
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.97
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.95
KOG1129	478	consensus TPR repeat-containing protein [General f	97.92
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.92
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.91
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.9
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.89
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.87
PF13428	44	TPR_14: Tetratricopeptide repeat	97.83
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.81
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.79
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.79
PRK10803	263	tol-pal system protein YbgF; Provisional	97.78
cd06405	79	PB1_Mekk2_3 The PB1 domain is present in the two m	97.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.75
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.75
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.75
KOG4234	271	consensus TPR repeat-containing protein [General f	97.74
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.7
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.69
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.69
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.68
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.68
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.67
PF13431	34	TPR_17: Tetratricopeptide repeat	97.64
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.64
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.61
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.55
PRK15331	165	chaperone protein SicA; Provisional	97.54
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.53
PF13428	44	TPR_14: Tetratricopeptide repeat	97.52
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.52
KOG4555	175	consensus TPR repeat-containing protein [Function	97.51
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.48
cd06411	78	PB1_p51 The PB1 domain is present in the p51 prote	97.45
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.43
PRK10941	269	hypothetical protein; Provisional	97.43
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.37
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.34
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.33
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.32
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.3
PF13431	34	TPR_17: Tetratricopeptide repeat	97.24
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.21
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.16
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.15
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.14
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.09
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.04
PF13512	142	TPR_18: Tetratricopeptide repeat	97.02
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.98
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.98
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.96
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.75
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.75
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.74
PRK04841	903	transcriptional regulator MalT; Provisional	96.72
PRK04841	903	transcriptional regulator MalT; Provisional	96.69
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.69
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.63
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.6
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.6
KOG3606	358	consensus Cell polarity protein PAR6 [Signal trans	96.57
KOG3364	149	consensus Membrane protein involved in organellar	96.55
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.53
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.44
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.42
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.38
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.36
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.32
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.3
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	96.27
KOG2471	696	consensus TPR repeat-containing protein [General f	96.26
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.24
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.23
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.18
PRK10941	269	hypothetical protein; Provisional	96.18
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.17
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.11
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.01
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.97
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.89
PLN03077	857	Protein ECB2; Provisional	95.85
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.84
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.83
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.83
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.82
PLN03218	1060	maturation of RBCL 1; Provisional	95.8
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.8
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.74
COG2912	269	Uncharacterized conserved protein [Function unknow	95.72
PLN03218	1060	maturation of RBCL 1; Provisional	95.72
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.68
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.68
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.61
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.58
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.57
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.53
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.49
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.46
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.44
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.43
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.18
PLN03077	857	Protein ECB2; Provisional	95.1
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.03
KOG1586	288	consensus Protein required for fusion of vesicles	94.81
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.76
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.72
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.64
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.55
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.51
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.4
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.37
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.11
KOG2471	696	consensus TPR repeat-containing protein [General f	94.08
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.08
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.07
KOG1585	308	consensus Protein required for fusion of vesicles	93.95
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.94
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	93.82
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.63
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.61
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.6
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.25
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.06
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.01
KOG1915	677	consensus Cell cycle control protein (crooked neck	93.0
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	92.94
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	92.8
KOG1586	288	consensus Protein required for fusion of vesicles	92.6
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.54
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	92.5
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	92.39
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.37
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	92.32
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	92.11
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.08
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.85
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.44
COG2912	269	Uncharacterized conserved protein [Function unknow	91.32
KOG3364	149	consensus Membrane protein involved in organellar	90.99
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	90.85
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	90.65
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.29
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.24
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.94
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.77
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	89.55
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.08
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	88.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	88.79
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	88.65
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	88.52
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.0
KOG1585	308	consensus Protein required for fusion of vesicles	87.81
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	87.73
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	87.26
KOG4814	872	consensus Uncharacterized conserved protein [Funct	87.2
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	87.03
KOG1310	758	consensus WD40 repeat protein [General function pr	86.53
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	85.88
COG3629	280	DnrI DNA-binding transcriptional activator of the	85.87
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	85.81
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	85.51
KOG0529	421	consensus Protein geranylgeranyltransferase type I	85.28
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	85.01
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	84.87
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	84.81
KOG2300	629	consensus Uncharacterized conserved protein [Funct	84.65
KOG2047	835	consensus mRNA splicing factor [RNA processing and	84.49
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	84.28
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	84.01
PHA02537	230	M terminase endonuclease subunit; Provisional	83.92
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	83.79
COG5191	435	Uncharacterized conserved protein, contains HAT (H	83.41
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.28
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.63
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	82.45
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	81.93
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	81.88
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	81.78
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.75
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	80.18
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	80.08

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=99.97  E-value=7.6e-31  Score=280.11  Aligned_cols=372  Identities=47%  Similarity=0.636  Sum_probs=282.9

Q ss_pred             CCCCCccCCCCCCCCCCCCCCCCC-----C-C-CCCCCCCCCc-hhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014213            1 MGRNSGKTKKQIGGQSVGGSPKQI-----K-V-GEHSPKSYDK-DTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKAL   72 (429)
Q Consensus         1 mgk~~~kkk~~~~~~~~~~~~~~~-----~-s-~~~~~~~~d~-d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kAL   72 (429)
                      ||++++|+++....-+...++...     . + ..+-....+. +..+++.++..++.+||.+|++++|.+|...|..++
T Consensus         1 ~~d~~~k~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~d~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~   80 (748)
T KOG4151|consen    1 MGDKTLKSKNNLDVLNDAENGAELVGEKSKKPKVLSIVKSLDDEDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAI   80 (748)
T ss_pred             CCccccccCCcccccccccccccccccccccchhhhhhhcccccchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhh
Confidence            899999998885532222221111     1 1 2222333334 778899999999999999999999999999999999


Q ss_pred             HhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213           73 KLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus        73 el~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      .+.|.++.+.+++++|++.|||++++++|..++.+|+.|+...|...++++.++.+|..+++++-|++++.-...++|.+
T Consensus        81 ~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~  160 (748)
T KOG4151|consen   81 KLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSN  160 (748)
T ss_pred             eeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            99999888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccc--cchhhhhhhhcccccC---cccccccc-----cchhhc
Q 014213          153 IMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSI--APKVVKEKTKKKKKSN---KVEQKKTG-----VKVEEK  222 (429)
Q Consensus       153 ~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~--~a~v~k~~~~~k~~~~---~~~~~~~~-----~~~~~~  222 (429)
                      .++...+.+++..+...+.+..+  .+++...+.|..+++  ++.+.+++..++++..   .+-.+...     .+.+. 
T Consensus       161 ~~~~eif~elk~ll~~~d~~s~~--~~~~~~~~~~vg~~~~~~~~i~l~rl~~~~~~~~~~~~~~~~~~~~~~~~v~~~-  237 (748)
T KOG4151|consen  161 VSASEIFEELKGLLELKDLASDE--SELPLEAVAPVGASPALIAKICLQRLYKSKKTDCVEAFLTKDGERLFKERVFED-  237 (748)
T ss_pred             chHHHHHHHHHHHHhhcCCcccc--ccCChhhhccccCchHHHHHHHHHHHhhhccchhHHhhcCCcHHhhhhhhhccC-
Confidence            99999999999999777777765  334444577776666  7788888887776332   11111111     11111 


Q ss_pred             cccccccccccc--chhHHHhhhhhh------hhhhhc-----ccccCCCCceeEEEEeCCceEEEEccCCccHHHHHHH
Q 014213          223 EVDEKIEDKRVD--GRIEEKMAEDKV------VVEEKI-----SSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREV  289 (429)
Q Consensus       223 ~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~-----~~~~~~~~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~  289 (429)
                      +++.+..+....  ++..........      .+.+.+     ...+...+++++|+++++|||+.++|.+|++..|+++
T Consensus       238 ~~d~~~~~~~~~~l~a~~~~~v~~~~~~~~~e~l~~~~l~~~~~~~e~~~~~~~~~~v~~~~i~laql~~~~~~~~lR~i  317 (748)
T KOG4151|consen  238 PSDLKFKKKSKCKLKAAQEDPVSDTVKVMDKEQLLEEILAVGGSQDELAQVWRTLKLVYGDDIRLAQLPLNCTVKILREI  317 (748)
T ss_pred             cccchhhhhhhhhhhhhcCCcccchhhhhhHHHHHHHhhcccccchHHhhhhhhhhhhhccHHHHHhcchhhchHHHHHH
Confidence            111111111000  111111111100      011100     0124567999999999999999999999999999999


Q ss_pred             HHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCC-cEEEEEEeeCCCCchhhhhhhhh-hccchhhhh-hhc
Q 014213          290 ISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQG-SVRLFVVGVNPLQDPLYERFKNE-KVNSLDIEQ-KYF  366 (429)
Q Consensus       290 v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~-~~rl~v~e~~~~~e~~~~~~~~~-~~~~~~~~~-~~~  366 (429)
                      |.+ ||.+..|+|||+|.+||+|||++.++|+|+.+.+...+ .+|+|+++++|+|+|.|...+.+ +....+.+- +..
T Consensus       318 i~~-~~~~~~v~ik~~~~~~~~vtit~~a~l~l~~sa~i~l~~~~r~~~ve~s~~qd~ry~s~~a~~ke~~i~d~~s~~a  396 (748)
T KOG4151|consen  318 IHS-FPSLRAVLIKYRDTEGDLVTITTTAELRLAESAVIKLGKTLRFYVVEVSPEQDPRYLSIDAELKELKIEDSSSSKA  396 (748)
T ss_pred             Hhc-ccchhhheeeeccCCcceeeeeehhhhhhhhHHHHHHHHHhhhheeecCccccchhhccccchhhhhccccchHHH
Confidence            999 99999999999999999999999999999999988777 79999999999999999887766 666677766 777


Q ss_pred             ccCCCCCCCC
Q 014213          367 ENGNVGNGKE  376 (429)
Q Consensus       367 ~~g~~~~~~~  376 (429)
                      .||..+.+.+
T Consensus       397 ln~l~~~~~~  406 (748)
T KOG4151|consen  397 LNGLKGDAVE  406 (748)
T ss_pred             HHhhhccccc
Confidence            7777754443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=3.7e-21  Score=187.77  Aligned_cols=125  Identities=30%  Similarity=0.454  Sum_probs=119.5

Q ss_pred             HHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 014213           40 VFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS  119 (429)
Q Consensus        40 ~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~  119 (429)
                      .....|+.|+.+||.+++.++|++|+..|++||+++|+++.    +|+|||++|++|  |+|+.|+.+|..||.+||.++
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV----yycNRAAAy~~L--g~~~~AVkDce~Al~iDp~ys  149 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV----YYCNRAAAYSKL--GEYEDAVKDCESALSIDPHYS  149 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch----HHHHHHHHHHHh--cchHHHHHHHHHHHhcChHHH
Confidence            34588999999999999999999999999999999999995    999999999999  999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                      ++|.|+|.+|..+|+|.+|++.|++||.++|+|...+..|..+...+.+..
T Consensus       150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999998886644

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=99.85  E-value=3.1e-21  Score=157.03  Aligned_cols=77  Identities=26%  Similarity=0.435  Sum_probs=73.3

Q ss_pred             CceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhc--------cCC
Q 014213          260 PKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAE--------MQG  331 (429)
Q Consensus       260 ~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~--------~~~  331 (429)
                      ++++|||||++|+|.++||++++|.+|.++|+++|+...+|+|||+|| ||+|||+|++||++|+++|+        .+|
T Consensus         1 ~~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~~~~~iKykDE-GD~iti~sq~DLd~Ai~~a~~~~~~~~~~~~   79 (86)
T cd06408           1 RKIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFKRRLKIKMKDD-GDMITMGDQDDLDMAIDTARSEARKQGSDMG   79 (86)
T ss_pred             CcEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCCCceEEEEEcC-CCCccccCHHHHHHHHHHHHHHHHhhccccc
Confidence            478999999999999999999999999999999999999999999998 99999999999999999984        478


Q ss_pred             cEEEEE
Q 014213          332 SVRLFV  337 (429)
Q Consensus       332 ~~rl~v  337 (429)
                      ++++||
T Consensus        80 ~~e~w~   85 (86)
T cd06408          80 KLEIWV   85 (86)
T ss_pred             ceeeec
Confidence            999998

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=99.83  E-value=1.3e-20  Score=150.75  Aligned_cols=66  Identities=33%  Similarity=0.502  Sum_probs=60.3

Q ss_pred             eEEEEeCCceEEEEccCC-ccHHHHHHHHHhhC----CCCCceEEEEECCCCCEEEecChHHHHHHHHhhc
Q 014213          263 TVKLVFGEDIRVAQLPLN-SSLLQLREVISDRF----PSCRAVLIKYRDEEGDLVTITTDEELRWAEASAE  328 (429)
Q Consensus       263 ~vK~~~~~DiR~~~i~~~-~~~~~L~~~v~~kf----~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~  328 (429)
                      -||++||+|||++.+|.+ |+|.+|+++|++.|    |+.+.|.|||+|+|||||||||++||++|++++.
T Consensus         2 iiK~~~g~DiR~~~~~~~~~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~dGDlVTIts~~dL~~A~~~~~   72 (81)
T cd06401           2 ILKAQLGDDIRRIPIHNEDITYDELLLMMQRVFRGKLGSSDDVLIKYKDEDGDLITIFDSSDLSFAIQCSR   72 (81)
T ss_pred             eEEEEeCCeEEEEeccCccccHHHHHHHHHHHhccccCCcccEEEEEECCCCCEEEeccHHHHHHHHhcCc
Confidence            589999999999999985 89999999997555    5668999999999999999999999999999864

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=99.81  E-value=1e-19  Score=148.77  Aligned_cols=77  Identities=34%  Similarity=0.495  Sum_probs=70.3

Q ss_pred             eeEEEEe-----CCceEEEEc--cCCccHHHHHHHHHhhCCCCC--ceEEEEECCCCCEEEecChHHHHHHHHhhccCCc
Q 014213          262 KTVKLVF-----GEDIRVAQL--PLNSSLLQLREVISDRFPSCR--AVLIKYRDEEGDLVTITTDEELRWAEASAEMQGS  332 (429)
Q Consensus       262 ~~vK~~~-----~~DiR~~~i--~~~~~~~~L~~~v~~kf~~~~--~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~  332 (429)
                      ++||+..     ..|||||.|  +.+++|.+|+++|+++||.++  +|+|||+|+|||+|||+|++||+||++++. .+.
T Consensus         1 ~~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~-~~~   79 (87)
T cd06402           1 LTVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN-DDT   79 (87)
T ss_pred             CeEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC-CCc
Confidence            3678876     368999998  777899999999999999887  899999999999999999999999999976 789


Q ss_pred             EEEEEEe
Q 014213          333 VRLFVVG  339 (429)
Q Consensus       333 ~rl~v~e  339 (429)
                      +||||++
T Consensus        80 ~RlyI~~   86 (87)
T cd06402          80 FRIYIKE   86 (87)
T ss_pred             EEEEEEe
Confidence            9999997

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.76  E-value=1e-17  Score=155.69  Aligned_cols=132  Identities=33%  Similarity=0.535  Sum_probs=122.4

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS  119 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~  119 (429)
                      .+..+..++.+||.+|.+|+|++|...|..||++.|.-+. .++.+|.|+|+|++++  +.++.||.+|.+||+++|.|.
T Consensus        91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl--~k~e~aI~dcsKaiel~pty~  168 (271)
T KOG4234|consen   91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL--RKWESAIEDCSKAIELNPTYE  168 (271)
T ss_pred             HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh--hhHHHHHHHHHhhHhcCchhH
Confidence            4678899999999999999999999999999999997554 5789999999999999  999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|+.|||.+|..+..|++|+.+|++.+.++|.+..+...+.++-..+.++...+.
T Consensus       169 kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmK  223 (271)
T KOG4234|consen  169 KALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMK  223 (271)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888876555544

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=99.74  E-value=1.4e-17  Score=135.52  Aligned_cols=77  Identities=27%  Similarity=0.374  Sum_probs=71.0

Q ss_pred             eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC--CceEEEEECCCCCEEEecChHHHHHHHHhhcc--CCcEEEEE
Q 014213          262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC--RAVLIKYRDEEGDLVTITTDEELRWAEASAEM--QGSVRLFV  337 (429)
Q Consensus       262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~--~~~~iky~DedgDliti~~~~dl~~a~~~~~~--~~~~rl~v  337 (429)
                      ++||++||+|++++.||++++|.+|++.|+++|+..  .+|.|||.|+|||+|+|+||+||+.|+..+..  ...++|+|
T Consensus         1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v   80 (82)
T cd06407           1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLV   80 (82)
T ss_pred             CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEe
Confidence            489999999999999999999999999999999765  58999999999999999999999999998754  45699998


Q ss_pred             E
Q 014213          338 V  338 (429)
Q Consensus       338 ~  338 (429)
                      .
T Consensus        81 ~   81 (82)
T cd06407          81 H   81 (82)
T ss_pred             e
Confidence            6

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>smart00666 PB1 PB1 domain

Probab=99.73  E-value=1.9e-17  Score=133.57  Aligned_cols=78  Identities=35%  Similarity=0.540  Sum_probs=71.5

Q ss_pred             ceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHHHHHHHhhcc--CCcEEEEE
Q 014213          261 KKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEELRWAEASAEM--QGSVRLFV  337 (429)
Q Consensus       261 ~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl~~a~~~~~~--~~~~rl~v  337 (429)
                      +++||++|++|+|++.+|.+++|.+|+.+|.++|+.. ..|.|+|+|+|||+|||+|++||.+|++.+..  ...++|||
T Consensus         1 ~~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~Dl~~a~~~~~~~~~~~l~l~v   80 (81)
T smart00666        1 TVDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDEDLEEAIEEYDSLGSKKLRLHV   80 (81)
T ss_pred             CccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHHHHHHHHHHHHHcCCceEEEEe
Confidence            4689999999999999999999999999999999865 58999999999999999999999999999865  46799988


Q ss_pred             E
Q 014213          338 V  338 (429)
Q Consensus       338 ~  338 (429)
                      .
T Consensus        81 ~   81 (81)
T smart00666       81 F   81 (81)
T ss_pred             C
Confidence            4

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=99.72  E-value=3.8e-17  Score=132.39  Aligned_cols=79  Identities=41%  Similarity=0.610  Sum_probs=73.3

Q ss_pred             ceeEEEEeCCceEE-EEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHHHHHHHhhcc--CCcEEEE
Q 014213          261 KKTVKLVFGEDIRV-AQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEELRWAEASAEM--QGSVRLF  336 (429)
Q Consensus       261 ~~~vK~~~~~DiR~-~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl~~a~~~~~~--~~~~rl~  336 (429)
                      |++||++|++|+|+ +.++.+++|.+|+..|+.+|+.. ..|.|+|+|+|||+|||+||+||.+|++.+..  .+.+|||
T Consensus         1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dgD~V~i~sd~Dl~~a~~~~~~~~~~~lrl~   80 (84)
T PF00564_consen    1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDGDLVTISSDEDLQEAIEQAKESGSKTLRLF   80 (84)
T ss_dssp             SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTSSEEEESSHHHHHHHHHHHHHCTTSCEEEE
T ss_pred             CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCCCEEEeCCHHHHHHHHHHHHhcCCCcEEEE
Confidence            68999999999999 99999999999999999999876 88999999999999999999999999999854  3579999


Q ss_pred             EEe
Q 014213          337 VVG  339 (429)
Q Consensus       337 v~e  339 (429)
                      |++
T Consensus        81 v~~   83 (84)
T PF00564_consen   81 VQD   83 (84)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            985

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.7e-16  Score=160.66  Aligned_cols=141  Identities=30%  Similarity=0.389  Sum_probs=123.8

Q ss_pred             CCCCCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHH
Q 014213           27 GEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-----------DVSYLRSNMAACYMQ   95 (429)
Q Consensus        27 ~~~~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-----------~~a~l~~nrA~~y~k   95 (429)
                      ...++|.+...  .-+..|...++.||.||+.|+|..|+..|.+|+........           .+..+|.|+|+||++
T Consensus       192 ~~~~s~~~~~~--e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lK  269 (397)
T KOG0543|consen  192 KEDESWKMFAE--ERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLK  269 (397)
T ss_pred             CcccccccchH--HHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            34455555554  45699999999999999999999999999999998874321           135789999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213           96 MGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL  171 (429)
Q Consensus        96 l~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~  171 (429)
                      |  ++|..|+..|+++|+++|+|.+|+||+|.||..+|+|+.|..+|++|++++|+|..+...+..+...+.+...
T Consensus       270 l--~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~  343 (397)
T KOG0543|consen  270 L--KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEE  343 (397)
T ss_pred             h--hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9  9999999999999999999999999999999999999999999999999999999999999998887765443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.4e-16  Score=163.41  Aligned_cols=130  Identities=37%  Similarity=0.562  Sum_probs=112.3

Q ss_pred             CCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213           31 PKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL  110 (429)
Q Consensus        31 ~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~  110 (429)
                      ...+..+..  ++.|..++++||.+|..|.|++||.+|++||++.|+.+.    +|+||++||..+  |+|++.+++|++
T Consensus       103 ~~a~~~e~~--~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi----FYsNraAcY~~l--gd~~~Vied~Tk  174 (606)
T KOG0547|consen  103 KKAMLKEER--LKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI----FYSNRAACYESL--GDWEKVIEDCTK  174 (606)
T ss_pred             hhccChHHH--HHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch----hhhhHHHHHHHH--hhHHHHHHHHHH
Confidence            333444444  599999999999999999999999999999999999874    999999999999  999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhh
Q 014213          111 ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP--KNIMAAEIAERVKKELEKR  169 (429)
Q Consensus       111 ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P--~n~~a~~~La~l~~~l~e~  169 (429)
                      ||+++|++++||+|||.+++.+|++++|+.++. ++.+.-  .|.+..-.+.++++.++.+
T Consensus       175 ALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~t-v~ci~~~F~n~s~~~~~eR~Lkk~a~~  234 (606)
T KOG0547|consen  175 ALELNPDYVKALLRRASAHEQLGKFDEALFDVT-VLCILEGFQNASIEPMAERVLKKQAMK  234 (606)
T ss_pred             HhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhh-HHHHhhhcccchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987 444432  4666777777777777543

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=99.69  E-value=1.5e-16  Score=128.33  Aligned_cols=77  Identities=19%  Similarity=0.239  Sum_probs=70.9

Q ss_pred             eeEEEEeCCceEEEEccC--CccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhcc-CCcEEEEEE
Q 014213          262 KTVKLVFGEDIRVAQLPL--NSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEM-QGSVRLFVV  338 (429)
Q Consensus       262 ~~vK~~~~~DiR~~~i~~--~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~-~~~~rl~v~  338 (429)
                      ++|||+|++|+++|.+++  +++|.+|...|+++|... +|.|||.|+|||+|||+||.||+.|+.++.. +..+|++|.
T Consensus         1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~-~f~lKYlDde~e~v~lssd~eLeE~~rl~~~~~~~l~~~v~   79 (81)
T cd06396           1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN-DIQIKYVDEENEEVSVNSQGEYEEALKSAVRQGNLLQMNVY   79 (81)
T ss_pred             CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC-cceeEEEcCCCCEEEEEchhhHHHHHHHHHhCCCEEEEEEe
Confidence            589999999999999999  889999999999999766 9999999999999999999999999999854 455899887


Q ss_pred             e
Q 014213          339 G  339 (429)
Q Consensus       339 e  339 (429)
                      |
T Consensus        80 ~   80 (81)
T cd06396          80 E   80 (81)
T ss_pred             c
Confidence            5

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=99.67  E-value=2.8e-16  Score=126.47  Aligned_cols=77  Identities=38%  Similarity=0.512  Sum_probs=70.9

Q ss_pred             eeEEEEeCCceEEEEcc-CCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHHHHHHHhhc--cCCcEEEEE
Q 014213          262 KTVKLVFGEDIRVAQLP-LNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEELRWAEASAE--MQGSVRLFV  337 (429)
Q Consensus       262 ~~vK~~~~~DiR~~~i~-~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl~~a~~~~~--~~~~~rl~v  337 (429)
                      ++||++|++|+|++.+| .+++|.+|+.+|+++|+.. ..|.|+|+|+|||+|||+|++||++|++.+.  ..+.++|||
T Consensus         1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd~Dl~~a~~~~~~~~~~~l~l~v   80 (81)
T cd05992           1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSDEDLEEAIEEARRSGSKKLRLFV   80 (81)
T ss_pred             CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCHHHHHHHHHHHhhcCCccEEEEe
Confidence            46999999999999999 9999999999999999765 7899999999999999999999999999986  467899987


Q ss_pred             E
Q 014213          338 V  338 (429)
Q Consensus       338 ~  338 (429)
                      .
T Consensus        81 ~   81 (81)
T cd05992          81 F   81 (81)
T ss_pred             C
Confidence            3

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=99.67  E-value=3.6e-16  Score=125.74  Aligned_cols=68  Identities=29%  Similarity=0.316  Sum_probs=63.5

Q ss_pred             eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCC--ceEEEEECCCCCEEEecChHHHHHHHHhhcc
Q 014213          262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCR--AVLIKYRDEEGDLVTITTDEELRWAEASAEM  329 (429)
Q Consensus       262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~--~~~iky~DedgDliti~~~~dl~~a~~~~~~  329 (429)
                      ++||++|++||+++.++.+++|.+|.++|++.|+...  +|+|||+|||||.|||+||+||.||+.+...
T Consensus         1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~   70 (83)
T cd06404           1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYEL   70 (83)
T ss_pred             CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999997665  7999999999999999999999999988643

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=99.67  E-value=5.7e-16  Score=128.36  Aligned_cols=77  Identities=27%  Similarity=0.424  Sum_probs=69.7

Q ss_pred             eEEEEeCCceEEEEccC-----CccHHHHHHHHHhhCCCC--CceEEEEECCCCCEEEecChHHHHHHHHhh---ccCCc
Q 014213          263 TVKLVFGEDIRVAQLPL-----NSSLLQLREVISDRFPSC--RAVLIKYRDEEGDLVTITTDEELRWAEASA---EMQGS  332 (429)
Q Consensus       263 ~vK~~~~~DiR~~~i~~-----~~~~~~L~~~v~~kf~~~--~~~~iky~DedgDliti~~~~dl~~a~~~~---~~~~~  332 (429)
                      .|||.|++|+|||.+|.     +++|.+|.++|++.|...  ..|.|+|+|+|||+|||+|++||.+|+++.   ....+
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~   81 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNP   81 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCce
Confidence            69999999999999996     699999999999999655  589999999999999999999999999985   23567


Q ss_pred             EEEEEEe
Q 014213          333 VRLFVVG  339 (429)
Q Consensus       333 ~rl~v~e  339 (429)
                      +||.|+-
T Consensus        82 lrl~v~~   88 (91)
T cd06398          82 LRIDVTV   88 (91)
T ss_pred             EEEEEEE
Confidence            9999984

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=8.7e-16  Score=159.24  Aligned_cols=118  Identities=31%  Similarity=0.497  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.+.+.++.||.+|+.|+|..|+..|++||..+|+++.    +|+|||.||.+|  +.|..|+.+|+.+++++|++.++|
T Consensus       356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~----lYsNRAac~~kL--~~~~~aL~Da~~~ieL~p~~~kgy  429 (539)
T KOG0548|consen  356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR----LYSNRAACYLKL--GEYPEALKDAKKCIELDPNFIKAY  429 (539)
T ss_pred             hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhcCchHHHHH
Confidence            44788899999999999999999999999999999984    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      +|.|.|+..+.+|+.|++.|.+++.++|++..+...+.++..++
T Consensus       430 ~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  430 LRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999876

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.64  E-value=1e-15  Score=151.87  Aligned_cols=125  Identities=28%  Similarity=0.413  Sum_probs=117.2

Q ss_pred             chhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 014213           36 KDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT  115 (429)
Q Consensus        36 ~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld  115 (429)
                      .=...+|+.+.+++++||.||++|.|++|+.||.+++.++|.++.    +|.|||.+|+++  ..|..|..+|+.|+.++
T Consensus        88 ~I~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV----~~~NRA~AYlk~--K~FA~AE~DC~~AiaLd  161 (536)
T KOG4648|consen   88 PIAQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV----YHINRALAYLKQ--KSFAQAEEDCEAAIALD  161 (536)
T ss_pred             HHHHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc----chhhHHHHHHHH--HHHHHHHHhHHHHHHhh
Confidence            334567899999999999999999999999999999999999995    999999999999  99999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          116 PLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       116 P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      -.|.+||.||+.+-..||...+|..+|+.+|.|+|++.+....++.+...+
T Consensus       162 ~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~  212 (536)
T KOG4648|consen  162 KLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR  212 (536)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence            999999999999999999999999999999999999999888888876644

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.62  E-value=9.2e-15  Score=149.20  Aligned_cols=118  Identities=19%  Similarity=0.330  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..|+.+|+.+|..|+|++|+..|.+||+++|.+..    +|+++|.||+++  |+|++|+.+|++|+.++|++..+|++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~----a~~~~a~~~~~~--g~~~eAl~~~~~Al~l~P~~~~a~~~   75 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE----LYADRAQANIKL--GNFTEAVADANKAIELDPSLAKAYLR   75 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            456899999999999999999999999999999885    999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      +|.+|..+|+|++|+.+|++++.++|++..+...+..+...+..
T Consensus        76 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         76 KGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999888854

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.61  E-value=1.9e-14  Score=128.59  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .+...|..+++.|+|++|+..|++++.++|.+..    +|.++|.++..+  |+|++|+..|++++.++|+++.+++++|
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~lg~~~~~~--g~~~~A~~~y~~Al~l~p~~~~a~~~lg   99 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR----AHIALAGTWMML--KEYTTAINFYGHALMLDASHPEPVYQTG   99 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            3667899999999999999999999999999885    999999999999  9999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      .||..+|++++|+..|++++.+.|+++.++..++.++..+.
T Consensus       100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~  140 (144)
T PRK15359        100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD  140 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998887664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=5.2e-15  Score=153.53  Aligned_cols=113  Identities=26%  Similarity=0.390  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      |.++++.||.+|..|+|+.|+.+|.+||.++|.++.    +|+|+++||..+  ++|.+|+.+..++++++|+|+++|.+
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv----lySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r   75 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV----LYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSR   75 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc----hhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHH
Confidence            578999999999999999999999999999999996    999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      +|.++..+|+|++|+..|.+.|+.+|+|...+..+..++
T Consensus        76 ~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   76 KGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             hHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999988

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=5.1e-14  Score=142.51  Aligned_cols=124  Identities=27%  Similarity=0.356  Sum_probs=114.5

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k  120 (429)
                      ..+....+++.||.+|++|+|..|.++|.+||.++|.+....+.+|.|||.++.++  |+..+||.+|+.|+.|||.+.+
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL--grl~eaisdc~~Al~iD~syik  322 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL--GRLREAISDCNEALKIDSSYIK  322 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc--CCchhhhhhhhhhhhcCHHHHH
Confidence            34777889999999999999999999999999999998877889999999999999  9999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      ||+++|.||..+++|++|+++|++|++++-+ ...+..+.++...|.
T Consensus       323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk  368 (486)
T KOG0550|consen  323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK  368 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence            9999999999999999999999999999876 667777777766665

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.46  E-value=1.9e-12  Score=112.15  Aligned_cols=115  Identities=23%  Similarity=0.297  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..+++.|+|++|+..|+.++.++|.+..    ++.++|.+|+.+  +++++|+..+++++.++|+++..++.+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~la~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~l   91 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR----YWLGLAACCQML--KEYEEAIDAYALAAALDPDDPRPYFHA   91 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence            45788999999999999999999999999999875    999999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      |.+|..+|+++.|+..|++++.++|++.........+...+
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            99999999999999999999999999998887777776654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.1e-12  Score=125.52  Aligned_cols=143  Identities=22%  Similarity=0.280  Sum_probs=121.9

Q ss_pred             CCCCCCCCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCCc------cHHHHHHHH
Q 014213           24 IKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL--------PRNHI------DVSYLRSNM   89 (429)
Q Consensus        24 ~~s~~~~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~--------P~~~~------~~a~l~~nr   89 (429)
                      |......+|.++.|+.+  +....+.++||.+|..|+|.+|..+|..||-..        |.+++      ....++.|.
T Consensus       159 P~qYq~e~WqlsddeKm--kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy  236 (329)
T KOG0545|consen  159 PSQYQRETWQLSDDEKM--KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNY  236 (329)
T ss_pred             chhhccccccCCchHhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhH
Confidence            44467789999999887  888999999999999999999999999998654        44443      135689999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHh
Q 014213           90 AACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM-AAEIAERVKKELEK  168 (429)
Q Consensus        90 A~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~-a~~~La~l~~~l~e  168 (429)
                      +.|++..  |+|-+++..|...|...|.+.+|||+||.|+...-+.++|..+|.++|.++|.-.. +...+..+..++.+
T Consensus       237 ~QC~L~~--~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~e  314 (329)
T KOG0545|consen  237 CQCLLKK--EEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAE  314 (329)
T ss_pred             HHHHhhH--HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            9999999  99999999999999999999999999999999999999999999999999997543 44555555555544


Q ss_pred             hc
Q 014213          169 RG  170 (429)
Q Consensus       169 ~~  170 (429)
                      +.
T Consensus       315 k~  316 (329)
T KOG0545|consen  315 KQ  316 (329)
T ss_pred             hh
Confidence            43

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.44  E-value=2.5e-12  Score=139.66  Aligned_cols=105  Identities=31%  Similarity=0.461  Sum_probs=98.1

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ...|..+++.|+.+|+.|+|++|+..|++||.+.|. +    .+|+|+|.||+++  |+|++|+.+|++||+++|++.++
T Consensus       124 ~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~----~~~~n~a~~~~~l--~~~~~Ai~~~~~al~l~p~~~~a  196 (615)
T TIGR00990       124 KKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P----VYYSNRAACHNAL--GDWEKVVEDTTAALELDPDYSKA  196 (615)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h----HHHHHHHHHHHHh--CCHHHHHHHHHHHHHcCCCCHHH
Confidence            377889999999999999999999999999999995 3    3899999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                      |+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus       197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       197 LNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999998888876543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.41  E-value=4.4e-13  Score=140.96  Aligned_cols=151  Identities=20%  Similarity=0.177  Sum_probs=132.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      -+.+|.++||+|-..+.|+.|+.+|.+|+.+.|++..    +|.|+|-.|...  |..+-||..|++||+++|+++.||.
T Consensus       251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~----a~gNla~iYyeq--G~ldlAI~~Ykral~~~P~F~~Ay~  324 (966)
T KOG4626|consen  251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV----AHGNLACIYYEQ--GLLDLAIDTYKRALELQPNFPDAYN  324 (966)
T ss_pred             chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh----hccceEEEEecc--ccHHHHHHHHHHHHhcCCCchHHHh
Confidence            3467899999999999999999999999999999886    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcc---cccchhhhhh
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVT---SIAPKVVKEK  200 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~---~~~a~v~k~~  200 (429)
                      ++|.++..+|+..+|+++|.+||.+.|+++++..+|+.++..++.-+.+..-+...|.   +.|.-+   .-++.+.+++
T Consensus       325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqq  401 (966)
T KOG4626|consen  325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQ  401 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhc
Confidence            9999999999999999999999999999999999999999999988888776665664   444433   3455666655


Q ss_pred             hhc
Q 014213          201 TKK  203 (429)
Q Consensus       201 ~~~  203 (429)
                      ++-
T Consensus       402 gnl  404 (966)
T KOG4626|consen  402 GNL  404 (966)
T ss_pred             ccH
Confidence            543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.40  E-value=8.9e-12  Score=112.90  Aligned_cols=116  Identities=15%  Similarity=0.132  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.-+.+...|..+++.|++++|...|+-.+.++|.+..    .|.|+|.|+-.+  |+|++||..|.+|+.++|+++.++
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~----y~~gLG~~~Q~~--g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD----YWFRLGECCQAQ--KHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHH
Confidence            34467899999999999999999999999999999985    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      ++.|.||..+|+.+.|...|+.|+.+.-.++.......++..
T Consensus       107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~  148 (157)
T PRK15363        107 WAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEK  148 (157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHH
Confidence            999999999999999999999999987555444444444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.40  E-value=5.7e-12  Score=125.31  Aligned_cols=105  Identities=21%  Similarity=0.188  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+.++|..+...|++++|+..|++|++++|+++.    +|+++|.+|..+  |+|++|+..|+++++++|++..+|+
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~  136 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD----AYNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAYL  136 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3566889999999999999999999999999999885    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                      ++|.+|...|++++|+.+|++++.++|+++.
T Consensus       137 ~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        137 NRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999974

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=1.6e-12  Score=128.87  Aligned_cols=111  Identities=26%  Similarity=0.356  Sum_probs=103.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.|..+++.||.||+..+|..|+.+|.++|...-.++...+++|+|||+|.+-+  |+|..||.+|.+|+.++|++.+||
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l--~NyRs~l~Dcs~al~~~P~h~Ka~  156 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYL--GNYRSALNDCSAALKLKPTHLKAY  156 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHHhcCcchhhhh
Confidence            578999999999999999999999999999998888877789999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA  155 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a  155 (429)
                      +|-|.|+..|.++++|+.+++..+.++-....+
T Consensus       157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~  189 (390)
T KOG0551|consen  157 IRGAKCLLELERFAEAVNWCEEGLQIDDEAKKA  189 (390)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            999999999999999999999988776544433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.36  E-value=2.4e-12  Score=135.49  Aligned_cols=133  Identities=20%  Similarity=0.256  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .|..+.++||.+...|.+++|...|.+|++..|.-.    .+++|+|..|-+.  |++++|+..|.+||+++|.+..+|.
T Consensus       353 hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a----aa~nNLa~i~kqq--gnl~~Ai~~YkealrI~P~fAda~~  426 (966)
T KOG4626|consen  353 HADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA----AAHNNLASIYKQQ--GNLDDAIMCYKEALRIKPTFADALS  426 (966)
T ss_pred             cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh----hhhhhHHHHHHhc--ccHHHHHHHHHHHHhcCchHHHHHH
Confidence            455566666666666666666666666666666554    3778888888777  8888888888888888888888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc--cccCCC
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT--VIELPP  182 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~--~~~L~p  182 (429)
                      ++|..|..+|+...|+++|.+|+.++|..+++..+|+.+++.-+.-..++..+  +.+|.|
T Consensus       427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            88888888888888888888888888888888888888877777666665533  444444

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=99.36  E-value=4.5e-12  Score=101.07  Aligned_cols=66  Identities=20%  Similarity=0.200  Sum_probs=60.6

Q ss_pred             eEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHHHHHHHhhc
Q 014213          263 TVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEELRWAEASAE  328 (429)
Q Consensus       263 ~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl~~a~~~~~  328 (429)
                      ++|+.|++|+|||.+|...+|..|.+++...|... ..|.|+|-|+|||.|||+|++||+.++..+.
T Consensus         2 ~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~~~~~~   68 (82)
T cd06397           2 QFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDFYRLSH   68 (82)
T ss_pred             eEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHHHHhcc
Confidence            68999999999999999999999999999999433 2599999999999999999999999998753

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.35  E-value=8.9e-12  Score=135.33  Aligned_cols=128  Identities=16%  Similarity=0.094  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..++..|++++|+..|+++|+++|.+..    .|.++|.+|+.+  |+|++|+..++++++++|+++.+|+
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~----~~~~la~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~  403 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ----SYIKRASMNLEL--GDPDKAEEDFDKALKLNSEDPDIYY  403 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3456788899999999999999999999999998774    899999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV  177 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~  177 (429)
                      .+|.+|..+|++++|+.+|++++.++|++..++..++.++..+++...+.....
T Consensus       404 ~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~  457 (615)
T TIGR00990       404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR  457 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999998887777766433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.34  E-value=2.8e-11  Score=113.96  Aligned_cols=112  Identities=21%  Similarity=0.183  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHH-HHcCCCC--HHHHHHHHHHHHHhCCCCHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACY-MQMGLSE--YPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y-~kl~~g~--y~eAi~~~~~ALeldP~~~k  120 (429)
                      .+..|...|..|...|+|++|+..|.+|+++.|++..    ++.++|.++ ...  |+  +++|+..++++++++|++..
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~----~~~~lA~aL~~~~--g~~~~~~A~~~l~~al~~dP~~~~  145 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE----LYAALATVLYYQA--GQHMTPQTREMIDKALALDANEVT  145 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCCChh
Confidence            3455788888888999999999999999999988875    888888874 666  66  58899999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      +++.+|.++..+|+|++|+.+|++++.++|.+..-...+..
T Consensus       146 al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~  186 (198)
T PRK10370        146 ALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVES  186 (198)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence            99999999999999999999999999888866544444443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.33  E-value=2.1e-12  Score=133.24  Aligned_cols=122  Identities=25%  Similarity=0.353  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..|..++++++.+|...+|+.|+..|.+||+++|+...    ++.||+.+|++.  ++|..|+.++.+|++++|.+.++|
T Consensus         2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~----~~anRa~a~lK~--e~~~~Al~Da~kaie~dP~~~K~Y   75 (476)
T KOG0376|consen    2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI----YFANRALAHLKV--ESFGGALHDALKAIELDPTYIKAY   75 (476)
T ss_pred             chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee----eechhhhhheee--chhhhHHHHHHhhhhcCchhhhee
Confidence            35788999999999999999999999999999999986    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                      +++|.++..++++.+|+.+|+....+.|+.+.+...+.++.....+++
T Consensus        76 ~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   76 VRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             eeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999998886543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.29  E-value=1.1e-10  Score=97.67  Aligned_cols=113  Identities=17%  Similarity=0.214  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKAL  122 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl  122 (429)
                      ..+...|..++..|+|++|+..|.+++...|.+.. ...+++.+|.++++.  ++|++|+..|..++...|++   ..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQ--GKYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            46889999999999999999999999999987642 235788899999999  99999999999999999885   6789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      +.+|.+|..+|++++|+..+++++...|++..+.....+
T Consensus        80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  118 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR  118 (119)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence            999999999999999999999999999999887665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=99.24  E-value=3.9e-11  Score=98.19  Aligned_cols=70  Identities=31%  Similarity=0.401  Sum_probs=63.1

Q ss_pred             CCceEEEEccCCccHHHHHHHHHhhCCCC----CceEEEEECCCCCEEEecChHHHHHHHHhhccCC--cEEEEEE
Q 014213          269 GEDIRVAQLPLNSSLLQLREVISDRFPSC----RAVLIKYRDEEGDLVTITTDEELRWAEASAEMQG--SVRLFVV  338 (429)
Q Consensus       269 ~~DiR~~~i~~~~~~~~L~~~v~~kf~~~----~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~--~~rl~v~  338 (429)
                      .+++.|+.+.++.++.+|++.|.+||+..    ..|.|+|.|+|||+|.||||+||..|+..++..|  .++|+|.
T Consensus         9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT~D~DL~e~v~iar~~g~~~v~L~v~   84 (86)
T cd06409           9 KGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLITSDSDLVAAVLVARSAGLKKLDLHLH   84 (86)
T ss_pred             CCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEeccchHHHHHHHHHHcCCCEEEEEEe
Confidence            67899999999999999999999999755    5799999999999999999999999999986654  4888886

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.23  E-value=1.3e-11  Score=130.92  Aligned_cols=132  Identities=20%  Similarity=0.308  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      .+.|...||-|--+++|+.|+.+|++||.++|+..    ++|..+|.-+...  .+|+.|...|+.||.++|++..|||.
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----YayTLlGhE~~~~--ee~d~a~~~fr~Al~~~~rhYnAwYG  494 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----YAYTLLGHESIAT--EEFDKAMKSFRKALGVDPRHYNAWYG  494 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----hhhhhcCChhhhh--HHHHhHHHHHHhhhcCCchhhHHHHh
Confidence            45789999999999999999999999999999877    6888899998888  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCCC
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPP  182 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p  182 (429)
                      +|.+|...++++.|.-.|++|+.++|.|......++.++.+++....++.  +++.-|+|
T Consensus       495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~  554 (638)
T KOG1126|consen  495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP  554 (638)
T ss_pred             hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999998887777  56666664

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.22  E-value=4.9e-11  Score=106.57  Aligned_cols=106  Identities=14%  Similarity=0.086  Sum_probs=97.0

Q ss_pred             HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213           66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV  145 (429)
Q Consensus        66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA  145 (429)
                      ..|++|++++|.+       +.++|.++.++  |+|++|+..|++++.++|.+..+|+.+|.++..+|++++|+..|+++
T Consensus        14 ~~~~~al~~~p~~-------~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A   84 (144)
T PRK15359         14 DILKQLLSVDPET-------VYASGYASWQE--GDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA   84 (144)
T ss_pred             HHHHHHHHcCHHH-------HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            5689999999974       35689999999  99999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          146 LNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       146 L~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      +.++|+++.++..++.++..+++...+.......+
T Consensus        85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al  119 (144)
T PRK15359         85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAI  119 (144)
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999998888877444433

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=6.7e-11  Score=121.54  Aligned_cols=118  Identities=19%  Similarity=0.218  Sum_probs=113.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYE  130 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~  130 (429)
                      .||-|--+++++.|+.+|++||+++|....    +|..+|.-|+.|  .+...|+..|++|++++|.+.+|||.+|++|.
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~----aWTLmGHEyvEm--KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLS----AWTLMGHEYVEM--KNTHAAIESYRRAVDINPRDYRAWYGLGQAYE  409 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhH----HHHHhhHHHHHh--cccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence            489999999999999999999999999884    999999999999  99999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          131 ALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       131 ~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      -|+-+.=|+-+|++|+.+-|+++..|..++.++..+.....|..
T Consensus       410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999999999999999999999999988888777

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=99.21  E-value=8e-11  Score=93.83  Aligned_cols=74  Identities=27%  Similarity=0.386  Sum_probs=66.9

Q ss_pred             eEEEEeCCceEEEEccCC--ccHHHHHHHHHhhCC-CCCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEEEE
Q 014213          263 TVKLVFGEDIRVAQLPLN--SSLLQLREVISDRFP-SCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVV  338 (429)
Q Consensus       263 ~vK~~~~~DiR~~~i~~~--~~~~~L~~~v~~kf~-~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~v~  338 (429)
                      .||..|+.|.||+.++.+  .+|.+|...|...+. ..-+|.|+|-|.+|||++|++|+.+..|++++.  -.+||+|+
T Consensus         2 eVKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l~~~~f~i~Y~D~~gDLLPInNDdNf~kAlssa~--plLRl~iq   78 (80)
T cd06403           2 EVKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHIPNVDFLIGYTDPHGDLLPINNDDNFLKALSSAN--PLLRIFIQ   78 (80)
T ss_pred             ceecccCCeEEEEEeccccCcCHHHHHHHHHHHhCCCCCcEEEEEeCCCCCEecccCcHHHHHHHHcCC--CceEEEEE
Confidence            589999999999999998  899999999999993 235799999999999999999999999999873  46999997

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>PRK12370 invasion protein regulator; Provisional

Probab=99.19  E-value=2.3e-10  Score=123.26  Aligned_cols=118  Identities=14%  Similarity=0.014  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC  128 (429)
Q Consensus        49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a  128 (429)
                      ...|..+...|++++|+..|++|++++|++..    +|+++|.+|..+  |++++|+..++++++++|.+..+++.++.+
T Consensus       342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~--G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        342 GLLGLINTIHSEYIVGSLLFKQANLLSPISAD----IKYYYGWNLFMA--GQLEEALQTINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            34444455555555555555555555554442    444455555554  555555555555555555544444444444


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhhccc
Q 014213          129 YEALNRLDLAFRDVTTVLNKE-PKNIMAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       129 y~~LG~~deAl~~~~kAL~l~-P~n~~a~~~La~l~~~l~e~~~a  172 (429)
                      ++.+|++++|+..+++++... |+++.++..++.++..+++...|
T Consensus       416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA  460 (553)
T PRK12370        416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA  460 (553)
T ss_pred             HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence            444555555555555554442 44444444455444444443333

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=8.3e-11  Score=112.38  Aligned_cols=100  Identities=22%  Similarity=0.306  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..++++++.||.+|....|..|+.+|.+||.++|..+.    +|.|+|.||+++  .+|+.+..+|.+|++++|+.++++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~----Y~tnralchlk~--~~~~~v~~dcrralql~~N~vk~h   81 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS----YYTNRALCHLKL--KHWEPVEEDCRRALQLDPNLVKAH   81 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcch----hhhhHHHHHHHh--hhhhhhhhhHHHHHhcChHHHHHH
Confidence            45688999999999999999999999999999998874    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      |-+|.++.....|++|+..+.+|+.+
T Consensus        82 ~flg~~~l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   82 YFLGQWLLQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHH
Confidence            99999999999999999999999776

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.18  E-value=5.5e-10  Score=101.97  Aligned_cols=125  Identities=15%  Similarity=0.113  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..++..|+|++|+..|++++...|.+..    ++..+|.+|+.+  |++++|+..+++++++.|.+..+++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~  103 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL----AYLALALYYQQL--GELEKAEDSFRRALTLNPNNGDVLN  103 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHH
Confidence            3567888999999999999999999999999998764    888899999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhhccccc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKE--PKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~--P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+|.+|...|++++|+..|++++...  |.....+..++.++...++...+..
T Consensus       104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  156 (234)
T TIGR02521       104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK  156 (234)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999864  4556677778888877776665555

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.18  E-value=3.3e-10  Score=87.16  Aligned_cols=99  Identities=31%  Similarity=0.428  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .+...|..++..|++++|+..|.++++..|.+.    .++.++|.+|...  +++++|+..+++++.+.|.+..+++.+|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~   75 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKL--GKYEEALEDYEKALELDPDNAKAYYNLG   75 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCcchhHHHHHH
Confidence            367899999999999999999999999999876    4889999999999  9999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      .++..+|+++.|...+.+++.+.|.
T Consensus        76 ~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          76 LAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999998874

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.16  E-value=1.3e-10  Score=89.81  Aligned_cols=65  Identities=25%  Similarity=0.357  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN-RLDLAFRDVTTVLNKEP  150 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG-~~deAl~~~~kAL~l~P  150 (429)
                      .+|.++|.+++.+  ++|++|+..|+++++++|+++.+|+++|.||..+| ++++|+.+|+++++++|
T Consensus         4 ~~~~~~g~~~~~~--~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQ--GDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHT--THHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4666777777777  77777777777777777777777777777777777 57777777777777766

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.16  E-value=1.2e-09  Score=99.72  Aligned_cols=107  Identities=27%  Similarity=0.276  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+...|..++..|+|++|+.+|.+++.+.|... ..+.++.++|.+|..+  |+|++|+..+.+++.+.|.+..++
T Consensus        33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASN--GEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHH
Confidence            5567789999999999999999999999999987643 2346899999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 014213          123 LKRARCYEALNR--------------LDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       123 ~~rA~ay~~LG~--------------~deAl~~~~kAL~l~P~n  152 (429)
                      +.+|.+|..+|+              +++|++.+++++.++|++
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999999988              678888889999999887

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.16  E-value=2.7e-10  Score=107.31  Aligned_cols=117  Identities=10%  Similarity=0.059  Sum_probs=106.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--
Q 014213           58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY-EALNR--  134 (429)
Q Consensus        58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay-~~LG~--  134 (429)
                      .++.++++..|.++|+.+|++..    +|.++|.+|+.+  |++++|+..|++|+.++|++..+++.+|.++ ...|+  
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~----~w~~Lg~~~~~~--g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~  125 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSE----QWALLGEYYLWR--NDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHM  125 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCC
Confidence            56779999999999999999986    999999999999  9999999999999999999999999999985 67787  


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       135 ~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      +++|...++++++++|++..++..++.+...+++...++......|
T Consensus       126 ~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370        126 TPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             cHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5999999999999999999999999999999998888887443333

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.15  E-value=1e-09  Score=100.16  Aligned_cols=124  Identities=17%  Similarity=0.098  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CCCHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PLYSKAL  122 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~~~kAl  122 (429)
                      +..+...|..++..|++++|+..|.+++++.|.+..    ++.++|.+|+.+  |++++|+..+.+++...  |.....+
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~  138 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD----VLNNYGTFLCQQ--GKYEQAMQQFEQAIEDPLYPQPARSL  138 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHc--ccHHHHHHHHHHHHhccccccchHHH
Confidence            445678899999999999999999999999998774    889999999999  99999999999999864  5667889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +.+|.+|..+|++++|...|.+++..+|++..++..++.++...++...+..
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999988887666655

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.15  E-value=3e-10  Score=125.04  Aligned_cols=130  Identities=8%  Similarity=-0.071  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..++..|....+.|.|++|+..++.++++.|.+..    ++.+++.++.++  +++++|+..+++++..+|++..+++.
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~----a~~~~a~~L~~~--~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE----AFILMLRGVKRQ--QGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHh--ccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            566788999999999999999999999999999885    999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      +|.++..+|+|++|+..|++++..+|+++.++..++.+++.+++...|...+...+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998877777444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.13  E-value=1.3e-10  Score=89.67  Aligned_cols=67  Identities=30%  Similarity=0.460  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCC
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEVTP  116 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALeldP  116 (429)
                      .|..|...|..++..|+|++|+..|++||+++|.+..    +|+++|.||+.+  | +|.+|+.+++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~----~~~~~g~~~~~~--~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE----AYYNLGLAYMKL--GKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH----HHHHHHHHHHHT--TTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHh--CccHHHHHHHHHHHHHcCc
Confidence            4678999999999999999999999999999999885    999999999999  9 79999999999999998

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.13  E-value=7.1e-10  Score=126.36  Aligned_cols=125  Identities=15%  Similarity=0.081  Sum_probs=98.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY  129 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay  129 (429)
                      ..+..++..|++++|+..|.+|++++|. .    .++.++|.++.++  |++++|+..+++++.++|+++.+++++|.++
T Consensus       581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~----~a~~~LA~~l~~l--G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL  653 (987)
T PRK09782        581 WLHAQRYIPGQPELALNDLTRSLNIAPS-A----NAYVARATIYRQR--HNVPAAVSDLRAALELEPNNSNYQAALGYAL  653 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCC-H----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3444555568888888888888888884 4    3778888888888  8888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      ..+|++++|+..|++++.++|+++.++..++.++..+++...+..  +++..+.
T Consensus       654 ~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        654 WDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            888888888888888888888888888888888888877666665  3344444

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.12  E-value=5.6e-10  Score=111.05  Aligned_cols=117  Identities=15%  Similarity=0.065  Sum_probs=106.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 014213           59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA  138 (429)
Q Consensus        59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deA  138 (429)
                      +..+.++..+.++|...|-+++..+.+|+++|.+|..+  |++.+|+.+|+++++++|+++.+|+.+|.+|..+|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSL--GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            46788999999999877766666678999999999999  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213          139 FRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV  177 (429)
Q Consensus       139 l~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~  177 (429)
                      +..|+++++++|++..++..++.++...++...+.....
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~  156 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL  156 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999999999988888777777443

>PRK12370 invasion protein regulator; Provisional

Probab=99.12  E-value=7.1e-10  Score=119.44  Aligned_cols=111  Identities=14%  Similarity=-0.019  Sum_probs=98.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 014213           58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDL  137 (429)
Q Consensus        58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~de  137 (429)
                      .+++++|+..|++|++++|+++.    +|..+|.++..+  |++++|+..|++|++++|+++.+|+.+|.+|..+|++++
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~e  390 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQ----ALGLLGLINTIH--SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEE  390 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            35589999999999999999985    899999999999  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          138 AFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       138 Al~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |+..|++++.++|.++.+...+..+...+++...+..
T Consensus       391 Ai~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~  427 (553)
T PRK12370        391 ALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR  427 (553)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence            9999999999999998776665555555565554444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.11  E-value=1e-09  Score=104.13  Aligned_cols=113  Identities=18%  Similarity=0.218  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK---  120 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k---  120 (429)
                      .+..+...|..++..|+|++|+..|++++...|.++ ....+++++|.+|+.+  ++|++|+..++++++..|++..   
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~a~~~la~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-YAEQAQLDLAYAYYKS--GDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-hHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCCchHH
Confidence            346789999999999999999999999999999875 2234788999999999  9999999999999999998776   


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213          121 ALLKRARCYEAL--------NRLDLAFRDVTTVLNKEPKNIMAAEIA  159 (429)
Q Consensus       121 Al~~rA~ay~~L--------G~~deAl~~~~kAL~l~P~n~~a~~~L  159 (429)
                      +++.+|.++..+        |+++.|+..|++++..+|++..+...+
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            799999999987        889999999999999999997665444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=3.9e-10  Score=119.95  Aligned_cols=131  Identities=15%  Similarity=0.191  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .-.+|+-.|..|+++++|+.|.-.|++|++++|.+..    +.+..|..|.++  |+.++|+..+++|+.++|.++-.-|
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv----i~~~~g~~~~~~--k~~d~AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV----ILCHIGRIQHQL--KRKDKALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh----HHhhhhHHHHHh--hhhhHHHHHHHHHHhcCCCCchhHH
Confidence            3455777777777777777777777777777777774    677777777777  7777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      .+|.++..+++|++|+..+++.-.+.|++..++..++++++.++....|+......+
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~  618 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL  618 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence            777777777777777777777777777777777777777777777777766554444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.10  E-value=2.3e-09  Score=97.36  Aligned_cols=108  Identities=20%  Similarity=0.158  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+...|..++..|+|++|+..|.+|+.+.|... ..+.+|.++|.+|..+  |++++|+..|.+|+.++|.+..++
T Consensus        33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-~~~~~~~~lg~~~~~~--g~~~eA~~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-DRSYILYNIGLIHTSN--GEHTKALEYYFQALERNPFLPQAL  109 (168)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-hhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCcHHHH
Confidence            5678899999999999999999999999999987533 3456899999999999  999999999999999999999999


Q ss_pred             HHHHHHHH-------HcCCHH-------HHHHHHHHHHHhCCCCH
Q 014213          123 LKRARCYE-------ALNRLD-------LAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       123 ~~rA~ay~-------~LG~~d-------eAl~~~~kAL~l~P~n~  153 (429)
                      +.+|.+|.       .+|+++       +|+..|++++.++|.+.
T Consensus       110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            99999999       777766       55666667777888654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.10  E-value=1.1e-09  Score=124.70  Aligned_cols=113  Identities=11%  Similarity=0.093  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +...|..+.+.|++++|+..|.+|+.++|++..    ++.++|.++..+  |++++|+..|++|++++|+++.+++++|.
T Consensus       612 ~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~----a~~nLG~aL~~~--G~~eeAi~~l~~AL~l~P~~~~a~~nLA~  685 (987)
T PRK09782        612 YVARATIYRQRHNVPAAVSDLRAALELEPNNSN----YQAALGYALWDS--GDIAQSREMLERAHKGLPDDPALIRQLAY  685 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            344444444444444444444444444444442    444444444444  44444444444444444444444444444


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      +|..+|++++|+.+|++++.++|++..+....+.+....
T Consensus       686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~  724 (987)
T PRK09782        686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR  724 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence            444444444444444444444444444444444444433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.09  E-value=1.1e-09  Score=104.33  Aligned_cols=134  Identities=18%  Similarity=0.091  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+....++|..|++.|++..|...+++||+.+|.+..    +|..||..|.++  |+.+.|-+.|++|+.++|++...+
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~----a~~~~A~~Yq~~--Ge~~~A~e~YrkAlsl~p~~GdVL  106 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL----AHLVRAHYYQKL--GENDLADESYRKALSLAPNNGDVL  106 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHc--CChhhHHHHHHHHHhcCCCccchh
Confidence            45677889999999999999999999999999999885    899999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHhhccccc--cccccCCC
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNK--EPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPP  182 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l--~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p  182 (429)
                      .+.|--++..|+|++|...|++|+..  -|.....+.+++.|-...++.+.+..  .+..+++|
T Consensus       107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp  170 (250)
T COG3063         107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP  170 (250)
T ss_pred             hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc
Confidence            99999999999999999999999985  35667889999999988887776666  34444554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=7.9e-10  Score=114.36  Aligned_cols=123  Identities=22%  Similarity=0.198  Sum_probs=113.2

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      -.+|..|.-.|..+|-.|++-+|...++.+|.++|.+..    +|..||.+|+..  .+-.+-..+|++|..+||.++..
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~----lyI~~a~~y~d~--~~~~~~~~~F~~A~~ldp~n~dv  396 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS----LYIKRAAAYADE--NQSEKMWKDFNKAEDLDPENPDV  396 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch----HHHHHHHHHhhh--hccHHHHHHHHHHHhcCCCCCch
Confidence            577899999999999999999999999999999999884    799999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                      ||.||+.+.-+++|++|+.+|+++++|+|+|.-++..+.-+..+++.-.
T Consensus       397 YyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~  445 (606)
T KOG0547|consen  397 YYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA  445 (606)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888887777766665433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.07  E-value=7.9e-10  Score=110.38  Aligned_cols=107  Identities=25%  Similarity=0.312  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      ++...+.|+.++.+|+|.+|+..|..|++.+|++..    +++.||.+|+.|  |+-..|+.+++++|++.|++.-|-..
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~----aifrRaT~yLAm--Gksk~al~Dl~rVlelKpDF~~ARiQ  111 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ----AIFRRATVYLAM--GKSKAALQDLSRVLELKPDFMAARIQ  111 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH----HHHHHHHHHhhh--cCCccchhhHHHHHhcCccHHHHHHH
Confidence            466889999999999999999999999999999884    889999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE  157 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~  157 (429)
                      ||.++..+|.++.|..+|+.+|..+|++....+
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~e  144 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLE  144 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcchhHH
Confidence            999999999999999999999999997654433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=3.2e-10  Score=119.08  Aligned_cols=127  Identities=17%  Similarity=0.201  Sum_probs=108.5

Q ss_pred             hHHHHhHHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 014213           38 TEVFIGMSQELK---------EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHEC  108 (429)
Q Consensus        38 ~~~~l~~A~~lk---------~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~  108 (429)
                      ...||+.|..+-         -+|..|+-.|+|+.|+.+|+.||...|++..    +|+.+|+.+..-  .++.+||..|
T Consensus       414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~----lWNRLGAtLAN~--~~s~EAIsAY  487 (579)
T KOG1125|consen  414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL----LWNRLGATLANG--NRSEEAISAY  487 (579)
T ss_pred             HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH----HHHHhhHHhcCC--cccHHHHHHH
Confidence            344555555443         5799999999999999999999999999984    999999999988  8999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHHHhhc
Q 014213          109 NLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN----------IMAAEIAERVKKELEKRG  170 (429)
Q Consensus       109 ~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n----------~~a~~~La~l~~~l~e~~  170 (429)
                      ++||++.|.|+++.|++|.+|..+|.|++|+.+|-.||.+.+.+          ..+|..|..+...++...
T Consensus       488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            99999999999999999999999999999999999999997651          246677766665554433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.04  E-value=2e-09  Score=118.29  Aligned_cols=122  Identities=15%  Similarity=0.072  Sum_probs=107.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHhCCCCHHHHHHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPR----AIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~e----Ai~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..|..++..|++++|+..|.+++.+.|.+..    ++.++|.+|..+  |++++    |+..|+++++++|++..++..+
T Consensus       217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~----~~~~Lg~~l~~~--G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~l  290 (656)
T PRK15174        217 LAVDTLCAVGKYQEAIQTGESALARGLDGAA----LRRSLGLAYYQS--GRSREAKLQAAEHWRHALQFNSDNVRIVTLY  290 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHc--CCchhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            3477888899999999999999999988764    888899999998  99885    8999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV  177 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~  177 (429)
                      |.+|..+|++++|+..+++++.++|+++.++..++.++..+++...+.....
T Consensus       291 g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~  342 (656)
T PRK15174        291 ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV  342 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999888887777766443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.04  E-value=8.7e-10  Score=107.89  Aligned_cols=123  Identities=20%  Similarity=0.170  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..|...|..+.+.|++++|+..|++||+++|++..    ++..++.++..+  |+++++...+.......|.++..+..+
T Consensus       147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~----~~~~l~~~li~~--~~~~~~~~~l~~~~~~~~~~~~~~~~l  220 (280)
T PF13429_consen  147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD----ARNALAWLLIDM--GDYDEAREALKRLLKAAPDDPDLWDAL  220 (280)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH----HHHHHHHHHCTT--CHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHC--CChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            45778899999999999999999999999999885    788888888888  999998888888888888888889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |.+|..+|++++|+..|++++..+|+|+..+..++.++...++...|+.
T Consensus       221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             HHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999999999999998877765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.03  E-value=2.4e-09  Score=117.69  Aligned_cols=131  Identities=13%  Similarity=0.056  Sum_probs=115.7

Q ss_pred             HHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           46 QELKEEGNKLFQKRDHGG----ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyee----Al~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ..+...|..|+..|++++    |+..|++|+.++|.+..    ++.++|.+++..  |++++|+..++++++++|++..+
T Consensus       247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~----a~~~lg~~l~~~--g~~~eA~~~l~~al~l~P~~~~a  320 (656)
T PRK15174        247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVR----IVTLYADALIRT--GQNEKAIPLLQQSLATHPDLPYV  320 (656)
T ss_pred             HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHH
Confidence            446678999999999986    89999999999998874    899999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc--cccCCC
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT--VIELPP  182 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~--~~~L~p  182 (429)
                      ++.+|.+|..+|++++|+..|++++..+|++..+...++.++..+++...+....  +..+.|
T Consensus       321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            9999999999999999999999999999999877777788888888777766633  344444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.03  E-value=7.3e-10  Score=89.40  Aligned_cols=84  Identities=29%  Similarity=0.403  Sum_probs=73.8

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 014213           57 QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLD  136 (429)
Q Consensus        57 ~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~d  136 (429)
                      ..|+|+.|+..|++++...|.+.  ...++.++|.||+++  |+|++|+..+++ +..+|.+...++.+|.||..+|+|+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~--~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~   75 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQ--GKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYE   75 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHT--THHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HH
T ss_pred             CCccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHC--CCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHH
Confidence            36899999999999999999643  124677799999999  999999999999 8899999999999999999999999


Q ss_pred             HHHHHHHHH
Q 014213          137 LAFRDVTTV  145 (429)
Q Consensus       137 eAl~~~~kA  145 (429)
                      +|+..|+++
T Consensus        76 eAi~~l~~~   84 (84)
T PF12895_consen   76 EAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999999875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.03  E-value=1.2e-09  Score=94.45  Aligned_cols=110  Identities=18%  Similarity=0.140  Sum_probs=99.5

Q ss_pred             HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213           66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV  145 (429)
Q Consensus        66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA  145 (429)
                      +.|++++.+.|.+..    +...+|.++...  |++++|+..+++++.++|.+..+++++|.+|..+|++++|+..|+++
T Consensus         4 ~~~~~~l~~~p~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~   77 (135)
T TIGR02552         4 ATLKDLLGLDSEQLE----QIYALAYNLYQQ--GRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA   77 (135)
T ss_pred             hhHHHHHcCChhhHH----HHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468899999998874    788999999999  99999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          146 LNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       146 L~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      +.++|.+...+..++.++..+++...+..  .....+.
T Consensus        78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999988777766  3344444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.02  E-value=4.4e-09  Score=101.70  Aligned_cols=127  Identities=17%  Similarity=0.083  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +...|..++..|+|.+|+..+.+|..+.|+++.    +|+.+|.+|.++  |++++|...|.+|+++.|..+..+.++|.
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~----~~~~lgaaldq~--Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgm  176 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE----AWNLLGAALDQL--GRFDEARRAYRQALELAPNEPSIANNLGM  176 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCChh----hhhHHHHHHHHc--cChhHHHHHHHHHHHhccCCchhhhhHHH
Confidence            555899999999999999999999999999997    999999999999  99999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      .|...|+++.|...+..+....+.+..+..+++.+....++...+-.--.+++
T Consensus       177 s~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         177 SLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            99999999999999999999999999999999999988887666544333334

>PLN02789 farnesyltranstransferase

Probab=99.01  E-value=6.5e-09  Score=105.00  Aligned_cols=116  Identities=12%  Similarity=-0.040  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHhCCCCHHH
Q 014213           45 SQELKEEGNKLFQKR-DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE--YPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~g-dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~--y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ...|..+|..+...+ ++++|+..+++++..+|++..    +|.+++.++.++  +.  +.+++..++++|+++|++..|
T Consensus        71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq----aW~~R~~~l~~l--~~~~~~~el~~~~kal~~dpkNy~A  144 (320)
T PLN02789         71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ----IWHHRRWLAEKL--GPDAANKELEFTRKILSLDAKNYHA  144 (320)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH----HhHHHHHHHHHc--CchhhHHHHHHHHHHHHhCcccHHH
Confidence            345667777777777 578888888888888887774    788888888777  55  367788888888888888888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      |..|+.++..+|+|++|+.++.++|+++|.|..++..+..+...+
T Consensus       145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            888888888888888888888888888888888888888776654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.99  E-value=3.6e-08  Score=96.99  Aligned_cols=114  Identities=13%  Similarity=0.057  Sum_probs=98.9

Q ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHH
Q 014213           46 QELKEEGNKL-FQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL---YSKA  121 (429)
Q Consensus        46 ~~lk~~Gn~l-f~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~---~~kA  121 (429)
                      ...++.+..+ +..|+|++|+..|+..|...|++. ....+++.+|.+|+..  |+|++|+..|..++...|+   .+.+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-~a~~A~y~LG~~y~~~--g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-YQPNANYWLGQLNYNK--GKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-chHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            3456666665 667999999999999999999874 2235788999999999  9999999999999998887   5779


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      ++++|.+|..+|+++.|+..|++++...|++..+.....++
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            99999999999999999999999999999998877666554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=6e-09  Score=107.39  Aligned_cols=123  Identities=20%  Similarity=0.231  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..|-..|..|....+-..|+..|++||+++|.+..    +|+.+|.+|--|  +...=|+-+|++|+++.|.+++.|..+
T Consensus       365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR----AWYGLGQaYeim--~Mh~YaLyYfqkA~~~kPnDsRlw~aL  438 (559)
T KOG1155|consen  365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR----AWYGLGQAYEIM--KMHFYALYYFQKALELKPNDSRLWVAL  438 (559)
T ss_pred             HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH----HHhhhhHHHHHh--cchHHHHHHHHHHHhcCCCchHHHHHH
Confidence            34567899999999999999999999999999984    999999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |.||..+++.++|+.+|.+|+...-.+..++..++.+++.+++...+..
T Consensus       439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence            9999999999999999999999988899999999999999987666554

>PRK15331 chaperone protein SicA; Provisional

Probab=98.96  E-value=1.1e-08  Score=93.30  Aligned_cols=116  Identities=11%  Similarity=0.022  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .-+.+...|-.+|+.|+|++|...|.-...++|.++.    .+..+|.|+..+  ++|++|+..|..|..++++++...|
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~----Y~~GLaa~~Q~~--k~y~~Ai~~Y~~A~~l~~~dp~p~f  109 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD----YTMGLAAVCQLK--KQFQKACDLYAVAFTLLKNDYRPVF  109 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHH--HHHHHHHHHHHHHHHcccCCCCccc
Confidence            3467888999999999999999999999999999985    889999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      ..|.||..+|+...|+..|..++. .|.+..........+..+
T Consensus       110 ~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l  151 (165)
T PRK15331        110 FTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEAL  151 (165)
T ss_pred             hHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHH
Confidence            999999999999999999999999 566665555544444444

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=98.92  E-value=6.2e-09  Score=83.88  Aligned_cols=75  Identities=20%  Similarity=0.263  Sum_probs=66.9

Q ss_pred             eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCC-CCceEEEEECCCC-CEEEecChHHHHHHHHhhccCCcEEEEEEe
Q 014213          262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPS-CRAVLIKYRDEEG-DLVTITTDEELRWAEASAEMQGSVRLFVVG  339 (429)
Q Consensus       262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~-~~~~~iky~Dedg-Dliti~~~~dl~~a~~~~~~~~~~rl~v~e  339 (429)
                      -.|||||.. +..|.+|..++|.+|.++|++|+.. ...+.+.|+|++. ++|.+ +++||+.|.+.+. .|.+.||+..
T Consensus         3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~~v~l-~d~dle~aws~~~-~~~lTLwC~~   79 (80)
T cd06406           3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGEDVIL-SDTNMEDVWSQAK-DGCLTLWCTL   79 (80)
T ss_pred             eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCCccCc-ChHHHHHHHHhhc-CCeEEEEEec
Confidence            479999975 9999999999999999999999965 5679999999885 89888 9999999999965 6889999874

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PLN02789 farnesyltranstransferase

Probab=98.92  E-value=7.7e-09  Score=104.44  Aligned_cols=132  Identities=14%  Similarity=0.039  Sum_probs=113.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213           55 LFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEVTPLYSKALLKRARCYEALN  133 (429)
Q Consensus        55 lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG  133 (429)
                      +...+.+++|+..+.++|.++|.+.    ++|.+++.++..+  + .+++++..++++++.+|++..+|+.|+.++..+|
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~y----taW~~R~~iL~~L--~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNY----TVWHFRRLCLEAL--DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHHc--chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcC
Confidence            5667899999999999999999988    4999999999999  7 6899999999999999999999999999999999


Q ss_pred             CH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccch
Q 014213          134 RL--DLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPK  195 (429)
Q Consensus       134 ~~--deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~  195 (429)
                      +.  ++++.++++++.++|.|-.++...+.+...++....++......|.   ..|.....|..
T Consensus       121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~---~d~~N~sAW~~  181 (320)
T PLN02789        121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE---EDVRNNSAWNQ  181 (320)
T ss_pred             chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCchhHHHH
Confidence            74  7899999999999999999999999999999877777664333333   23444555543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.92  E-value=3e-08  Score=108.69  Aligned_cols=131  Identities=19%  Similarity=0.146  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+..+||.+|..|++++|+..+.++|+.+|.+..    +|..+|.+|-++  |+.++|+..+..|-.++|.+...|.+
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~----ay~tL~~IyEqr--Gd~eK~l~~~llAAHL~p~d~e~W~~  212 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI----AYYTLGEIYEQR--GDIEKALNFWLLAAHLNPKDYELWKR  212 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHHc--ccHHHHHHHHHHHHhcCCCChHHHHH
Confidence            467889999999999999999999999999999996    999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCC
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELP  181 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~  181 (429)
                      +|.-...+|.+..|.-+|.+|++++|.+.........++..+|+...|+..+..-++
T Consensus       213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~  269 (895)
T KOG2076|consen  213 LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ  269 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999988886655554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.91  E-value=8.9e-09  Score=119.80  Aligned_cols=125  Identities=17%  Similarity=0.145  Sum_probs=105.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---------
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK---------  120 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k---------  120 (429)
                      ..|..++..|++++|+..|+++++++|.+..    ++..+|.+|+++  |++++|+..|+++++++|++..         
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~----a~~~Lg~~~~~~--g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~  347 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE----ALGALGQAYSQQ--GDRARAVAQFEKALALDPHSSNRDKWESLLK  347 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence            4588899999999999999999999998875    888999999999  9999999999999999987643         


Q ss_pred             -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          121 -----ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       121 -----Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                           .+..+|.++...|++++|+..|++++.++|++..++..++.++..+++...+.......|
T Consensus       348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL  412 (1157)
T PRK11447        348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL  412 (1157)
T ss_pred             hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                 224557888899999999999999999999999999999999888887777766443333

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.91  E-value=4.8e-09  Score=80.20  Aligned_cols=64  Identities=25%  Similarity=0.259  Sum_probs=53.6

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213           88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus        88 nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                      .+|..+++.  |+|++|+..|+++++.+|++..+++.+|.++..+|++++|+..|++++.++|+++
T Consensus         2 ~~a~~~~~~--g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQ--GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHC--THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            467788888  8888888888888888888888888888888888888888888888888888875

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.91  E-value=2.6e-08  Score=108.68  Aligned_cols=124  Identities=18%  Similarity=0.143  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|++++..+|.+..    ++..+|.+++..  |+|++|+..+++++..+|.+..+++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~  198 (899)
T TIGR02917       125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY----AKLGLAQLALAE--NRFDEARALIDEVLTADPGNVDALLL  198 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh----hHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            456788999999999999999999999999998774    888999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.++...|++++|+..|++++.++|++..++..+..++...++...+..
T Consensus       199 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~  248 (899)
T TIGR02917       199 KGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEK  248 (899)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999888888877765554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.90  E-value=1.5e-08  Score=117.92  Aligned_cols=123  Identities=15%  Similarity=0.106  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +...|..++..|++++|+..|++++.++|.+..    ++.++|.+|+.+  |++++|+..|+++++++|++..++..++.
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~----a~~~Lg~~~~~~--g~~~eA~~~y~~aL~~~p~~~~a~~~L~~  427 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSY----AVLGLGDVAMAR--KDYAAAERYYQQALRMDPGNTNAVRGLAN  427 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456789999999999999999999999998874    888999999999  99999999999999999999887665544


Q ss_pred             ------------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          128 ------------------------------------------CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       128 ------------------------------------------ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                                                                ++...|++++|+..|++++.++|+++.++..++.++..
T Consensus       428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                                      44567999999999999999999999999999999999


Q ss_pred             HHhhccccccc
Q 014213          166 LEKRGLRVNDT  176 (429)
Q Consensus       166 l~e~~~a~~e~  176 (429)
                      +++...+....
T Consensus       508 ~G~~~~A~~~l  518 (1157)
T PRK11447        508 AGQRSQADALM  518 (1157)
T ss_pred             cCCHHHHHHHH
Confidence            88877776633

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.90  E-value=2.1e-08  Score=112.10  Aligned_cols=118  Identities=16%  Similarity=0.168  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..+...|++++|+..|+++|.++|.+..    ++.+++.++...  |++++|+..+++++..+|++.. ++.+
T Consensus        50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~l~~~--g~~~eA~~~l~~~l~~~P~~~~-~~~l  122 (765)
T PRK10049         50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILTLADA--GQYDEALVKAKQLVSGAPDKAN-LLAL  122 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence            34788999999999999999999999999999875    788999999999  9999999999999999999999 9999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                      |.+|...|++++|+..|++++.+.|++..++..++.++...+...
T Consensus       123 a~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049        123 AYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence            999999999999999999999999999999998888776544433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.90  E-value=3.6e-08  Score=93.54  Aligned_cols=128  Identities=16%  Similarity=0.093  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCCCCH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM------GLSEYPRAIHECNLALEVTPLYS  119 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl------~~g~y~eAi~~~~~ALeldP~~~  119 (429)
                      ..+...|..+++.|++++|+..|+++++..|++.. ...+++++|.+|+.+      .++++++|+..+++++..+|++.
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  149 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPD-ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE  149 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence            35678899999999999999999999999998773 334688899999874      22689999999999999999986


Q ss_pred             HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHHhhccccc
Q 014213          120 KAL-----------------LKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       120 kAl-----------------~~rA~ay~~LG~~deAl~~~~kAL~l~P~n---~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .++                 +.+|.+|...|++.+|+..|++++...|++   +.++..++.++..+++...+..
T Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~  224 (235)
T TIGR03302       150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD  224 (235)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            542                 467889999999999999999999997765   5789999999999988776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.89  E-value=9e-09  Score=102.94  Aligned_cols=128  Identities=23%  Similarity=0.260  Sum_probs=112.6

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      +++.....+-+......++|.++++.+++.++.+|.....+...+--++.||..-  +++.+||..|.++|+++|+++.+
T Consensus       266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d--~~~~eAiqqC~evL~~d~~dv~~  343 (504)
T KOG0624|consen  266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED--EQFGEAIQQCKEVLDIDPDDVQV  343 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc--CCHHHHHHHHHHHHhcCchHHHH
Confidence            3556666677888999999999999999999999986553333455678899888  99999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL  171 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~  171 (429)
                      |--||.+|..-..|+.|+.+|++|+.++|+|..++..+.+++....+.+.
T Consensus       344 l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~k  393 (504)
T KOG0624|consen  344 LCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQSGK  393 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999887765443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.85  E-value=5e-08  Score=98.78  Aligned_cols=129  Identities=14%  Similarity=0.052  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ....+...+..+...|+|++|+..|.+++...|.+.. ..+.++.++|.++...  +++++|+..|+++++.+|++..++
T Consensus       140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~  217 (389)
T PRK11788        140 AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR--GDLDAARALLKKALAADPQCVRAS  217 (389)
T ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHhHCcCCHHHH
Confidence            3456777888888889999999999988888876543 2344677888888888  889999999999988888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhhccccc
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKN-IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n-~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +.+|.+|...|++++|+..|++++..+|.+ ..++..+..++..+++...+..
T Consensus       218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  270 (389)
T PRK11788        218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE  270 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence            888999988999999999999988888876 3456677777777666555544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.84  E-value=3.9e-08  Score=107.34  Aligned_cols=122  Identities=20%  Similarity=0.237  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      ...+...|..++..|+|++|+..|.+++...|.+.     .+.+++.+|.++  |++++|+..+++++..+|++..+++.
T Consensus       703 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~l~~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~  775 (899)
T TIGR02917       703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ-----NAIKLHRALLAS--GNTAEAVKTLEAWLKTHPNDAVLRTA  775 (899)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCch-----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45577789999999999999999999999988763     667788899888  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|..+|++++|+..|++++...|+++.++..++.++..+++ ..+..
T Consensus       776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~  824 (899)
T TIGR02917       776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALE  824 (899)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHH
Confidence            99999999999999999999999999999998888888877766 33444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.83  E-value=5e-08  Score=98.77  Aligned_cols=103  Identities=11%  Similarity=-0.009  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .+...|..++..|++++|+..|+.++...+........++.++|.+|+.+  |+|++|+..+.++++.+|.+..++..++
T Consensus        71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~--g~~~~A~~~~~~~l~~~~~~~~~~~~la  148 (389)
T PRK11788         71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA--GLLDRAEELFLQLVDEGDFAEGALQQLL  148 (389)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34444555555555555555555444432211111122344445555544  5555555555555544444444555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      .+|...|++++|+..+++++...|.
T Consensus       149 ~~~~~~g~~~~A~~~~~~~~~~~~~  173 (389)
T PRK11788        149 EIYQQEKDWQKAIDVAERLEKLGGD  173 (389)
T ss_pred             HHHHHhchHHHHHHHHHHHHHhcCC
Confidence            5555555555555555554444443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.80  E-value=7.2e-08  Score=92.11  Aligned_cols=121  Identities=18%  Similarity=0.067  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PLYSKALLKR  125 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~~~kAl~~r  125 (429)
                      +-.++..|-..|+.+.|-+.|++|+.+.|++..    +++|-|.-+...  |+|++|...|++|+..-  |..+..|-++
T Consensus        72 ~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd----VLNNYG~FLC~q--g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~  145 (250)
T COG3063          72 HLVRAHYYQKLGENDLADESYRKALSLAPNNGD----VLNNYGAFLCAQ--GRPEEAMQQFERALADPAYGEPSDTLENL  145 (250)
T ss_pred             HHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc----hhhhhhHHHHhC--CChHHHHHHHHHHHhCCCCCCcchhhhhh
Confidence            556788889999999999999999999999996    999999999998  99999999999998742  4567899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |.|....|+++.|..+|+++|.++|+++.+...+.+.+..-++...+..
T Consensus       146 G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         146 GLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             HHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            9999999999999999999999999999999999888877776665544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.80  E-value=1.2e-07  Score=84.79  Aligned_cols=113  Identities=22%  Similarity=0.299  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---H
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK---A  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k---A  121 (429)
                      +..+...|...++.|+|.+|+..|+......|... ....+...++.+|++.  ++|++|+..+++-|+++|.++.   |
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~-ya~qAqL~l~yayy~~--~~y~~A~a~~~rFirLhP~hp~vdYa   86 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE-YAEQAQLDLAYAYYKQ--GDYEEAIAAYDRFIRLHPTHPNVDYA   86 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc-ccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCCCccHH
Confidence            36799999999999999999999999999999754 2335778899999999  9999999999999999998855   8


Q ss_pred             HHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213          122 LLKRARCYEALNR---------------LDLAFRDVTTVLNKEPKNIMAAEIAE  160 (429)
Q Consensus       122 l~~rA~ay~~LG~---------------~deAl~~~~kAL~l~P~n~~a~~~La  160 (429)
                      ||.+|.+++.+..               ...|+.+|+.++..-|++.-+.....
T Consensus        87 ~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~  140 (142)
T PF13512_consen   87 YYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARK  140 (142)
T ss_pred             HHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            9999999999987               88999999999999999887655443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=4.3e-08  Score=103.11  Aligned_cols=117  Identities=22%  Similarity=0.263  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI---DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~---~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+.+.|-.+|..+.|.+|+..|+.++...+....   -+..+++|+|.+|.++  +.|++||..+++||.+.|.++.+|-
T Consensus       416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl--~~~~eAI~~~q~aL~l~~k~~~~~a  493 (611)
T KOG1173|consen  416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL--NKYEEAIDYYQKALLLSPKDASTHA  493 (611)
T ss_pred             hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH--hhHHHHHHHHHHHHHcCCCchhHHH
Confidence            3678899999999999999999999854433221   1345799999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      ..|.+|..+|+++.|+.+|.++|.+.|+|..+...|..+...
T Consensus       494 sig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  494 SIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            999999999999999999999999999999888888866554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.4e-07  Score=93.26  Aligned_cols=118  Identities=19%  Similarity=0.108  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM-GLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl-~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      .++.|.-.|..|+..|++..|+..|.+|+++.|++++    ++..+|.+++.. +...-.++...++++|.+||.+++++
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~----~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral  230 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE----ILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL  230 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence            4556889999999999999999999999999999996    777777776654 23457889999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      +.+|..++..|+|.+|+..+++.|.+.|.+..-...+++....
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~  273 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR  273 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence            9999999999999999999999999999887666665554433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.78  E-value=7.9e-08  Score=106.12  Aligned_cols=105  Identities=9%  Similarity=-0.092  Sum_probs=97.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.+..+.+.++.+++.+++++|+..+++++..+|++..    .++++|.|+.++  |+|++|+..|++++..+|++..++
T Consensus       118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~----~~~~~a~~l~~~--g~~~~A~~~y~~~~~~~p~~~~~~  191 (694)
T PRK15179        118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR----EILLEAKSWDEI--GQSEQADACFERLSRQHPEFENGY  191 (694)
T ss_pred             CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH----HHHHHHHHHHHh--cchHHHHHHHHHHHhcCCCcHHHH
Confidence            34456778999999999999999999999999999985    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                      +.+|.++..+|+.++|...|++|+.+...-.
T Consensus       192 ~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        192 VGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            9999999999999999999999999865443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.78  E-value=3.9e-08  Score=76.50  Aligned_cols=69  Identities=29%  Similarity=0.434  Sum_probs=52.1

Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           91 ACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus        91 ~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      ..|++.  ++|++|+..+++++.++|+++.+|+.+|.+|..+|++.+|+.+|++++++.|+++.+....+.
T Consensus         3 ~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    3 QIYLQQ--EDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHhC--CCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            456666  778888888888888888888888888888888888888888888888888877776655543

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.76  E-value=1.8e-08  Score=99.25  Aligned_cols=101  Identities=20%  Similarity=0.213  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      -+-+-|.-+|+-  ++|.+|+..|++||+++|.++-.|-+||.+|..||.|+.|+++++.||.++|+...+|..++.++.
T Consensus        83 ~LK~eGN~~m~~--~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~  160 (304)
T KOG0553|consen   83 SLKNEGNKLMKN--KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL  160 (304)
T ss_pred             HHHHHHHHHHHh--hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            345667778887  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccccccCCCCCCCCCcc
Q 014213          165 ELEKRGLRVNDTVIELPPEYVEPPVT  190 (429)
Q Consensus       165 ~l~e~~~a~~e~~~~L~p~~~~P~~~  190 (429)
                      .+++...++..+.+.|+   ..|..+
T Consensus       161 ~~gk~~~A~~aykKaLe---ldP~Ne  183 (304)
T KOG0553|consen  161 ALGKYEEAIEAYKKALE---LDPDNE  183 (304)
T ss_pred             ccCcHHHHHHHHHhhhc---cCCCcH
Confidence            99998888886555554   445544

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.76  E-value=2.4e-07  Score=81.85  Aligned_cols=104  Identities=26%  Similarity=0.248  Sum_probs=95.0

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k  120 (429)
                      .++...++-.+|..+...|+.++|++.|.+||.+.|..+    ++|+|+|.+|.-.  |+.++|+.++++|+++..+-.+
T Consensus        39 ~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra----SayNNRAQa~RLq--~~~e~ALdDLn~AleLag~~tr  112 (175)
T KOG4555|consen   39 AIKASRELELKAIALAEAGDLDGALELFGQALCLAPERA----SAYNNRAQALRLQ--GDDEEALDDLNKALELAGDQTR  112 (175)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch----HhhccHHHHHHHc--CChHHHHHHHHHHHHhcCccch
Confidence            468888899999999999999999999999999999887    5999999999888  9999999999999999865443


Q ss_pred             ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213          121 ----ALLKRARCYEALNRLDLAFRDVTTVLNKEP  150 (429)
Q Consensus       121 ----Al~~rA~ay~~LG~~deAl~~~~kAL~l~P  150 (429)
                          +|..||..|..+|+-+.|..+|+.|-.+-.
T Consensus       113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence                789999999999999999999999988754

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.75  E-value=2.2e-08  Score=76.45  Aligned_cols=64  Identities=27%  Similarity=0.287  Sum_probs=59.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS  119 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~  119 (429)
                      .+|..+++.|+|++|+..|+++++..|.+..    ++..+|.|++.+  |++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE----AWYLLGRILYQQ--GRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH----HHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCC
Confidence            5799999999999999999999999999875    999999999999  999999999999999999875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3.1e-08  Score=101.02  Aligned_cols=136  Identities=21%  Similarity=0.204  Sum_probs=118.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--------VSYLRSNMAACYMQMGLSEYPRAIHECNLALEV  114 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--------~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel  114 (429)
                      ..+..++.+|..++-..+.+.|+..|+++|+++|.....        .--.+-++|.-.++-  |.|..|...|..||.+
T Consensus       201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~--G~y~~A~E~Yteal~i  278 (486)
T KOG0550|consen  201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN--GNYRKAYECYTEALNI  278 (486)
T ss_pred             chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc--cchhHHHHHHHHhhcC
Confidence            456778899999999999999999999999999986541        122456677777777  9999999999999999


Q ss_pred             CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          115 TPLY----SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       115 dP~~----~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      +|.+    .+.|++||.++..+|+.++|+.+++.|++|+|.-..++...++++..+++.+.++.+....+
T Consensus       279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~  348 (486)
T KOG0550|consen  279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM  348 (486)
T ss_pred             CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9985    55799999999999999999999999999999999999999999999999999998554443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.72  E-value=4.2e-07  Score=88.37  Aligned_cols=127  Identities=19%  Similarity=0.208  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKA  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kA  121 (429)
                      +..+...|..++..|+|++|+..|++++...|..+ ....+..++|.+|+++  ++|++|+..+++.++..|++   ..+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~--~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKN--ADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            45688999999999999999999999999999875 3445568899999999  99999999999999999987   457


Q ss_pred             HHHHHHHHHHcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhccccc
Q 014213          122 LLKRARCYEALNR------------------LDLAFRDVTTVLNKEPKNI---MAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       122 l~~rA~ay~~LG~------------------~deAl~~~~kAL~l~P~n~---~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|.++..+++                  ...|+..|+..+..-|++.   .+...+..+...|.++...+.
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia  182 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVA  182 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999866651                  3578999999999999875   566666777777776665544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.69  E-value=2.4e-07  Score=103.63  Aligned_cols=108  Identities=16%  Similarity=0.012  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .+..+|..+...|++++|+..|++++...|.+..    ++.++|.+++.+  |++++|+..+++++.++|++..+++.+|
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~----l~~~lA~l~~~~--g~~~~A~~~l~~al~l~Pd~~~l~~~~a  434 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG----LRIDYASVLQAR--GWPRAAENELKKAEVLEPRNINLEVEQA  434 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhc--CCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence            4567888999999999999999999999999975    999999999999  9999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAE  160 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La  160 (429)
                      .++..+|++++|+..++++++..|+++.+...-.
T Consensus       435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~  468 (765)
T PRK10049        435 WTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR  468 (765)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            9999999999999999999999999997655433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.69  E-value=1.3e-07  Score=102.48  Aligned_cols=129  Identities=16%  Similarity=0.039  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .|...+..+...+.-++|..+..+|-.++|-.+    ..|+.+|.++...  |.+.+|...|..|+.++|+++.....+|
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~----~~~~~~G~~~~~~--~~~~EA~~af~~Al~ldP~hv~s~~Ala  725 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSA----SVYYLRGLLLEVK--GQLEEAKEAFLVALALDPDHVPSMTALA  725 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH----HHHHHhhHHHHHH--HhhHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            344555556666666777778888877777655    4777778888777  8888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          127 RCYEALNRLDLAFR--DVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       127 ~ay~~LG~~deAl~--~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      .+|...|+...|..  .+..++.++|.|..+|..++.+.+.+|+-..+.+  ..+..|+
T Consensus       726 ~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  726 ELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            88888887777777  7788888888888888888888888877666665  3345553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.69  E-value=1.9e-07  Score=71.46  Aligned_cols=88  Identities=23%  Similarity=0.261  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      +++++|.+++..  |++++|+..+.+++...|.+..+++.+|.+|...+++++|+..|++++.+.|.+..++..++.++.
T Consensus         2 ~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYKL--GDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHH--hcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            578899999999  999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHhhccccc
Q 014213          165 ELEKRGLRVN  174 (429)
Q Consensus       165 ~l~e~~~a~~  174 (429)
                      .+++...+..
T Consensus        80 ~~~~~~~a~~   89 (100)
T cd00189          80 KLGKYEEALE   89 (100)
T ss_pred             HHHhHHHHHH
Confidence            8877665544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.68  E-value=1.4e-07  Score=87.30  Aligned_cols=100  Identities=20%  Similarity=0.182  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 014213           61 HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--------LSEYPRAIHECNLALEVTPLYSKALLKRARCYEAL  132 (429)
Q Consensus        61 yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--------~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~L  132 (429)
                      |+.|...|+.++..+|.++.    .+++=|.+++.|-        ...+++|+.-+++||.++|+...|++.+|.||..+
T Consensus         7 FE~ark~aea~y~~nP~Dad----nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDAD----NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHH----HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            67899999999999999886    5666666665540        02467899999999999999999999999999988


Q ss_pred             CC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          133 NR-----------LDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       133 G~-----------~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      +.           |+.|..+|++|+..+|+|...+..|....+
T Consensus        83 A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   83 AFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             HhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence            75           788999999999999999999988887654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.68  E-value=5.8e-08  Score=102.34  Aligned_cols=133  Identities=17%  Similarity=0.135  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH----------------------------------------
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV----------------------------------------   82 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~----------------------------------------   82 (429)
                      +.++.|.-+|......++-..|+..+.+|++++|++-..+                                        
T Consensus       317 ~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~  396 (579)
T KOG1125|consen  317 QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE  396 (579)
T ss_pred             HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence            6788899999999999999999999999999998875411                                        


Q ss_pred             ---------------------------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           83 ---------------------------------SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY  129 (429)
Q Consensus        83 ---------------------------------a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay  129 (429)
                                                       +.+++.+|..|.-.  ++|++|+.+|+.||+.+|.+...|.++|-.+
T Consensus       397 ~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls--~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL  474 (579)
T KOG1125|consen  397 DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS--GEFDRAVDCFEAALQVKPNDYLLWNRLGATL  474 (579)
T ss_pred             cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc--hHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence                                             23667778887777  8999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213          130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV  177 (429)
Q Consensus       130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~  177 (429)
                      ..-.+..+|+..|.+||+|-|+-..++.+++..+..++....|+....
T Consensus       475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            999999999999999999999999999999999988888877776443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.67  E-value=9.1e-07  Score=83.38  Aligned_cols=128  Identities=16%  Similarity=0.214  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---H
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS---K  120 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~---k  120 (429)
                      .+..+...|..+++.|+|.+|+..|+..+...|.+. ....+...+|.+|++.  ++|..|+..+++.+...|++.   .
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~-~a~~A~l~la~a~y~~--~~y~~A~~~~~~fi~~yP~~~~~~~   80 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP-YAPQAQLMLAYAYYKQ--GDYEEAIAAYERFIKLYPNSPKADY   80 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCcchhh
Confidence            357899999999999999999999999999999865 4456778899999999  999999999999999999864   5


Q ss_pred             HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhccccc
Q 014213          121 ALLKRARCYEALN-----------RLDLAFRDVTTVLNKEPKNI---MAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       121 Al~~rA~ay~~LG-----------~~deAl~~~~kAL~l~P~n~---~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |+|.+|.+++.+.           ....|+..|+..+..-|++.   .+...+..+...|.++...+.
T Consensus        81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia  148 (203)
T PF13525_consen   81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA  148 (203)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999987764           24589999999999999985   566667778887776665544

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=98.67  E-value=1.5e-07  Score=79.06  Aligned_cols=75  Identities=25%  Similarity=0.447  Sum_probs=63.2

Q ss_pred             eEEEEe-CCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEE--CCCCC-EEEecChHHHHHHHHhhc----cCCcEE
Q 014213          263 TVKLVF-GEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYR--DEEGD-LVTITTDEELRWAEASAE----MQGSVR  334 (429)
Q Consensus       263 ~vK~~~-~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~--DedgD-liti~~~~dl~~a~~~~~----~~~~~r  334 (429)
                      .-|+.| |+|+|.+.|+.+++|.+|+.++.+.|.....+.|||.  ++|-| ||+|+||+||..-++...    ....+|
T Consensus        14 dg~l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~~~lky~Lp~edld~Lisv~~DeDl~~M~~e~~~~~~~~~rir   93 (97)
T cd06410          14 DGQLRYVGGETRIVSVDRSISFKELVSKLSELFGAGVVVTLKYQLPDEDLDALISVSNDEDLKNMMEEYDRLSGGSARLR   93 (97)
T ss_pred             CCCEEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCceEEEEEcCCCCcceeEEecCcHHHHHHHHhhccccCCCceEE
Confidence            345655 9999999999999999999999999977766999998  88888 999999999988877654    445566


Q ss_pred             EEE
Q 014213          335 LFV  337 (429)
Q Consensus       335 l~v  337 (429)
                      +|+
T Consensus        94 vfl   96 (97)
T cd06410          94 VFL   96 (97)
T ss_pred             EEE
Confidence            665

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.67  E-value=3.5e-07  Score=95.17  Aligned_cols=68  Identities=26%  Similarity=0.234  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT  115 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld  115 (429)
                      +..+.++|+.|+..|+|++|+..|++||+++|++.+ ...+|+|+|.||..+  |++++|+.++++|+++.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae-A~~A~yNLAcaya~L--Gr~dEAla~LrrALels  142 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE-AQAAYYNKACCHAYR--EEGKKAADCLRTALRDY  142 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH-HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhc
Confidence            457999999999999999999999999999999874 113699999999999  99999999999999983

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.66  E-value=8.3e-08  Score=73.60  Aligned_cols=64  Identities=25%  Similarity=0.337  Sum_probs=51.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      |+|++|+..|++++..+|++..+++.+|.||...|++++|...+++++..+|+++.++..++.+
T Consensus         5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            7888888888888888888888888888888888888888888888888888877777666553

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.65  E-value=1.1e-07  Score=97.30  Aligned_cols=94  Identities=15%  Similarity=0.118  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213           86 RSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus        86 ~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      +...|..++..  ++|++|+..|++||+++|++..+|+.+|.+|..+|++++|+.++++|+.++|++..++..++.++..
T Consensus         5 l~~~a~~a~~~--~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          5 LEDKAKEAFVD--DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            45678888888  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccc--cccccCC
Q 014213          166 LEKRGLRVN--DTVIELP  181 (429)
Q Consensus       166 l~e~~~a~~--e~~~~L~  181 (429)
                      +++...|..  +.+..+.
T Consensus        83 lg~~~eA~~~~~~al~l~  100 (356)
T PLN03088         83 LEEYQTAKAALEKGASLA  100 (356)
T ss_pred             hCCHHHHHHHHHHHHHhC
Confidence            998777776  4445555

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.64  E-value=2.3e-07  Score=72.11  Aligned_cols=70  Identities=31%  Similarity=0.370  Sum_probs=64.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      .+.|++.++|+.|+..+++++.++|.++.    +|..+|.||+++  |+|.+|+.+++++++.+|++..+..-++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~--g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPE----LWLQRARCLFQL--GRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            46899999999999999999999999885    999999999999  99999999999999999999888766654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.63  E-value=2.2e-07  Score=84.40  Aligned_cols=112  Identities=12%  Similarity=-0.030  Sum_probs=95.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHH
Q 014213           52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARC  128 (429)
Q Consensus        52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~a  128 (429)
                      .+.+|-...|..+...+...++..+.+.  .+.+|+++|.++..+  |+|++|+..|.+|+.+.|+.   ..+|+++|.+
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~   81 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSE--GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI   81 (168)
T ss_pred             ccccccccccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence            3556666778888888866666555433  467899999999999  99999999999999997763   4589999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          129 YEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       129 y~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      |..+|++++|+..|++++.++|.+...+..++.++..++
T Consensus        82 ~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         82 HTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999988555

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.63  E-value=4e-07  Score=102.28  Aligned_cols=125  Identities=15%  Similarity=0.055  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+...++.+...++.|+|..|+..|.++++.+|.+..   .++ .++.++..+  |++++|+..|++++.-+|.+..++.
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~---av~-dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~ll  106 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG---QVD-DWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLA  106 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh---hHH-HHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHH
Confidence            3456889999999999999999999999999999863   123 666777777  8888888888888844444555555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+|.+|..+|+|+.|+..|++++..+|+++.++..+..++..+++...++.
T Consensus       107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~  157 (822)
T PRK14574        107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK  157 (822)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence            557788888888888888888888888888888777666666655555444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.62  E-value=2.1e-07  Score=84.59  Aligned_cols=90  Identities=11%  Similarity=0.009  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      ..+.+|..++..  |++++|...|+.++.++|.+...|+++|.|+..+|+|.+|+..|.+|+.++|+++.+...++.++-
T Consensus        37 ~lY~~A~~ly~~--G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         37 TLYRYAMQLMEV--KEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            445588888888  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccc
Q 014213          165 ELEKRGLRVNDT  176 (429)
Q Consensus       165 ~l~e~~~a~~e~  176 (429)
                      .+++...+....
T Consensus       115 ~lG~~~~A~~aF  126 (157)
T PRK15363        115 ACDNVCYAIKAL  126 (157)
T ss_pred             HcCCHHHHHHHH
Confidence            998877766633

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=7.2e-07  Score=92.82  Aligned_cols=125  Identities=15%  Similarity=0.112  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      ....+-.+..+|..|++++|+..++..+...|+|+    +++..++..++..  +++++|++.+.+++.++|...-..++
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----~~~~~~~~i~~~~--nk~~~A~e~~~kal~l~P~~~~l~~~  379 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP----YYLELAGDILLEA--NKAKEAIERLKKALALDPNSPLLQLN  379 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHc--CChHHHHHHHHHHHhcCCCccHHHHH
Confidence            34567788899999999999999999999999998    5888899999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND  175 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e  175 (429)
                      +|.+|...|++.+|+..++..+.-+|+++..|..|++.+..++....+...
T Consensus       380 ~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         380 LAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            999999999999999999999999999999999999999999876666553

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.58  E-value=1.5e-06  Score=85.02  Aligned_cols=114  Identities=17%  Similarity=0.141  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKAL  122 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl  122 (429)
                      ..+++.+..+++.|+|.+|...|..-|...|++. ..+.+++-+|.|++.+  |+|++|...|..++.-.|++   +.++
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~-~~~nA~yWLGe~~y~q--g~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST-YTPNAYYWLGESLYAQ--GDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-ccchhHHHHHHHHHhc--ccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            4489999999999999999999999999999865 3345677789999999  99999999999999988776   5679


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      +.+|.|...+|+.++|...|+.+++--|+...+......+
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999887665554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.58  E-value=2.9e-08  Score=99.33  Aligned_cols=107  Identities=19%  Similarity=0.304  Sum_probs=100.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213           39 EVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY  118 (429)
Q Consensus        39 ~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~  118 (429)
                      ....++|...+-.+..++..|.++.|++.|..||.++|....    +|.+++.++++|  +.+..||.+|..|++++|+.
T Consensus       108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~----l~~kr~sv~lkl--~kp~~airD~d~A~ein~Ds  181 (377)
T KOG1308|consen  108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI----LYAKRASVFLKL--KKPNAAIRDCDFAIEINPDS  181 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh----hcccccceeeec--cCCchhhhhhhhhhccCccc
Confidence            344588899999999999999999999999999999998875    999999999999  99999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      .+.|--++.+...+|+|++|-.++..|.+++-+
T Consensus       182 a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  182 AKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             ccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999753

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.58  E-value=1.1e-07  Score=97.94  Aligned_cols=132  Identities=17%  Similarity=0.078  Sum_probs=84.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 014213           59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA  138 (429)
Q Consensus        59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deA  138 (429)
                      .+|.+|-.+-+.|+.++..++.    ++.|.|..-+.-  |+|++|...|..||.-+..+..|+|+.|..+..+|++++|
T Consensus       470 k~~~~aqqyad~aln~dryn~~----a~~nkgn~~f~n--gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldea  543 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAA----ALTNKGNIAFAN--GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEA  543 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHH----HhhcCCceeeec--CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHH
Confidence            3566666666666666665553    556666554444  6777777777777766666667777777777777777777


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhhhh
Q 014213          139 FRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKE  199 (429)
Q Consensus       139 l~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~k~  199 (429)
                      +.+|-+...+--++.+++..++.++..|+....+++...+...   +.|++++.+.+++-=
T Consensus       544 ld~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s---lip~dp~ilskl~dl  601 (840)
T KOG2003|consen  544 LDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS---LIPNDPAILSKLADL  601 (840)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---cCCCCHHHHHHHHHH
Confidence            7777666666666667777777777766666666654443333   556666666665553

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.56  E-value=1.6e-06  Score=75.65  Aligned_cols=99  Identities=19%  Similarity=0.060  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL---YSKAL  122 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~---~~kAl  122 (429)
                      ..+++.|..+-..|+.++|+..|++|+...+... .+..++.++|.+|..+  |++++|+..++.++...|+   +....
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~L--G~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNL--GRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            3578899999999999999999999999766544 4567889999999999  9999999999999999888   77888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLN  147 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~  147 (429)
                      .-++.++..+|++++|+..+-.++.
T Consensus        79 ~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   79 VFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8899999999999999999988886

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.56  E-value=2.2e-07  Score=96.64  Aligned_cols=64  Identities=19%  Similarity=0.160  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA---LLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA---l~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      +.+|+|+|.+|+++  |+|++|+..|++||+++|++..+   ||++|.||..+|++++|+.+|++|+.+
T Consensus        75 a~a~~NLG~AL~~l--GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSK--GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            35999999999999  99999999999999999999865   999999999999999999999999998

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.55  E-value=1.6e-07  Score=72.02  Aligned_cols=67  Identities=27%  Similarity=0.288  Sum_probs=60.7

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           55 LFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        55 lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +++.|+|++|+..|++++..+|.+..    ++..+|.||++.  |++++|...+.+++..+|+++..+..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~--g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQ--GQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHT--T-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            57899999999999999999999886    889999999999  99999999999999999998777776664

...

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.52  E-value=1.5e-07  Score=92.03  Aligned_cols=124  Identities=18%  Similarity=0.109  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLL--PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~--P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      +......++..++++++...+.++....  +.++    .+|..+|.+|.+.  |++++|+..+++||+++|++..++..+
T Consensus       113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~a~~~~~~--G~~~~A~~~~~~al~~~P~~~~~~~~l  186 (280)
T PF13429_consen  113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA----RFWLALAEIYEQL--GDPDKALRDYRKALELDPDDPDARNAL  186 (280)
T ss_dssp             -----H-HHHTT-HHHHHHHHHHHHH-T---T-H----HHHHHHHHHHHHC--CHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            4445566778888888888888877644  2232    4777888888888  888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV  177 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~  177 (429)
                      +.++...|+++++...+.......|+++..+..++.++..+++...|.....
T Consensus       187 ~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~  238 (280)
T PF13429_consen  187 AWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE  238 (280)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence            8888888888888888888777778888888888888888887777766433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.50  E-value=2.2e-07  Score=95.70  Aligned_cols=124  Identities=15%  Similarity=0.074  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+.+.||..|.+|+++.|++.|.+||.-+..-.    .+++|+|..+-.+  |+.++|+..|-+.-.+--++...++.
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~----ealfniglt~e~~--~~ldeald~f~klh~il~nn~evl~q  563 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT----EALFNIGLTAEAL--GNLDEALDCFLKLHAILLNNAEVLVQ  563 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH----HHHHHhcccHHHh--cCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            56678999999999999999999999998665433    4889999999999  99999999999887777789999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|..+.+...|++.+..+.++-|+++.++..|+.++..-+++..+..
T Consensus       564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq  613 (840)
T KOG2003|consen  564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ  613 (840)
T ss_pred             HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence            99999999999999999999999999999999999999998888877765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.50  E-value=1.4e-06  Score=77.51  Aligned_cols=129  Identities=19%  Similarity=0.118  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---H
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---S  119 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~  119 (429)
                      ..+...+......+..+++..+...++..+.-.|... ....++..+|.+++..  |+|++|+..++.++...|+.   .
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~-ya~~A~l~lA~~~~~~--g~~~~A~~~l~~~~~~~~d~~l~~   85 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP-YAALAALQLAKAAYEQ--GDYDEAKAALEKALANAPDPELKP   85 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCHHHHH
Confidence            4567777788888888888888888888888888763 2234667788888888  88888888888888877654   4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccc
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND  175 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e  175 (429)
                      .+.+++|.++...|+|++|+..++. +.-.+-.+.+...++.++...++...+...
T Consensus        86 ~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~  140 (145)
T PF09976_consen   86 LARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA  140 (145)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            5788888888888888888888865 333444567888888888888777666553

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.50  E-value=2.7e-07  Score=87.71  Aligned_cols=106  Identities=21%  Similarity=0.195  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      .+|.-++++|+.|=..|-+.-|-..|+++|.+.|.-+.    +++.+|..+..-  |+|+.|.+.|+..+++||.+--|.
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~----vfNyLG~Yl~~a--~~fdaa~eaFds~~ELDp~y~Ya~  136 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE----VFNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAH  136 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH----HHHHHHHHHHhc--ccchHHHHHhhhHhccCCcchHHH
Confidence            56677889999999999999999999999999998885    899999999998  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                      .+||.+++--|+|..|.+++.+...-+|+++-
T Consensus       137 lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         137 LNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             hccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            99999999999999999999999999999873

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.49  E-value=1.7e-06  Score=92.88  Aligned_cols=134  Identities=13%  Similarity=0.080  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHh
Q 014213           44 MSQELKEEGNKLFQKRD---HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGL------SEYPRAIHECNLALEV  114 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gd---yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~------g~y~eAi~~~~~ALel  114 (429)
                      .|-.+..+|..++..++   +..|+.+|++|++++|+++.    +|..++.||.....      .++..+.....+++.+
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~----a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY----AQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            34567888888887666   88999999999999999874    77777777755410      1234556666666664


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCCC
Q 014213          115 --TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPP  182 (429)
Q Consensus       115 --dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p  182 (429)
                        +|..+.+|.-+|..+...|++++|...|++|+.++| +..++..++.++...|+...+..  +++..|+|
T Consensus       414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence              777888999999999999999999999999999999 57899999999999988777777  45666664

>PRK11906 transcriptional regulator; Provisional

Probab=98.47  E-value=1.6e-06  Score=90.48  Aligned_cols=130  Identities=12%  Similarity=-0.007  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHH---HhCCCCCccHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHh
Q 014213           48 LKEEGNKLFQKRD---HGGALLKYEKAL---KLLPRNHIDVSYLRSNMAACYMQMG-------LSEYPRAIHECNLALEV  114 (429)
Q Consensus        48 lk~~Gn~lf~~gd---yeeAl~~Y~kAL---el~P~~~~~~a~l~~nrA~~y~kl~-------~g~y~eAi~~~~~ALel  114 (429)
                      +.-+|...+..+.   .+.|+.+|.+|+   .++|....    +|+.+|.||+.+.       .....+|+..+.+|+++
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~----a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel  333 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE----CYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI  333 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH----HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc
Confidence            4556666655554   467899999999   88887774    8999999998751       23456788899999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          115 TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       115 dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      +|.++.|++.+|.++...++++.|+..|++|+.++|+.+.++...+.+...-++...+..  +++..|+
T Consensus       334 d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs  402 (458)
T PRK11906        334 TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE  402 (458)
T ss_pred             CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999888877666655  5555665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.47  E-value=5.4e-06  Score=73.67  Aligned_cols=98  Identities=18%  Similarity=0.110  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      .......|..++..|+|++|+..|+.++...|.. .....++..+|.+++..  |+|++|+..++. +.-.+-.+.++..
T Consensus        48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA~~~~~~--~~~d~Al~~L~~-~~~~~~~~~~~~~  123 (145)
T PF09976_consen   48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRLARILLQQ--GQYDEALATLQQ-IPDEAFKALAAEL  123 (145)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHHc--CCHHHHHHHHHh-ccCcchHHHHHHH
Confidence            4456678999999999999999999999987543 34556788899999999  999999999966 3333445668889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVL  146 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL  146 (429)
                      +|.+|...|++++|...|++||
T Consensus       124 ~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  124 LGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHhC
Confidence            9999999999999999999885

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=3.3e-06  Score=88.03  Aligned_cols=113  Identities=20%  Similarity=0.164  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +-..|..++..+++.+|++.|++++.++|....    +..|+|.+|+++  |++.+|+..++..+.-+|+++..|..+|+
T Consensus       343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~----l~~~~a~all~~--g~~~eai~~L~~~~~~~p~dp~~w~~LAq  416 (484)
T COG4783         343 LELAGDILLEANKAKEAIERLKKALALDPNSPL----LQLNLAQALLKG--GKPQEAIRILNRYLFNDPEDPNGWDLLAQ  416 (484)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHhc--CChHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence            445688999999999999999999999999874    999999999999  99999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      +|..+|+-.+|+..+-..+.+..+-..+...+.++...+
T Consensus       417 ay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         417 AYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999988888888877776655

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.45  E-value=4.1e-07  Score=71.84  Aligned_cols=65  Identities=22%  Similarity=0.351  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213           82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-------PLYSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus        82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-------P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      .+.++.++|.+|..+  |+|++|+..|++++++.       |....+++++|.+|..+|++++|+.++++|+++
T Consensus         4 ~a~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYREL--GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            456777777777777  77777777777777552       122456777777777777777777777777765

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.45  E-value=2.5e-06  Score=77.91  Aligned_cols=85  Identities=16%  Similarity=0.111  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEI  158 (429)
Q Consensus        82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~  158 (429)
                      .+.+++++|.+|+.+  |+|++|+..|++++.+.|+.   ..+++.+|.+|..+|++++|+..|++++.+.|++..++..
T Consensus        34 ~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQAD--GEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            456889999999999  99999999999999988764   4689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 014213          159 AERVKKELEK  168 (429)
Q Consensus       159 La~l~~~l~e  168 (429)
                      ++.++..+++
T Consensus       112 lg~~~~~~g~  121 (172)
T PRK02603        112 IAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHcCC
Confidence            9988877655

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.45  E-value=1.4e-06  Score=72.75  Aligned_cols=88  Identities=19%  Similarity=0.120  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAAEI  158 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n---~~a~~~  158 (429)
                      .++++|..++..  |+|++|+..|..++..+|++   ..+++.+|.+|...|++++|+..|+.++...|++   ..++..
T Consensus         4 ~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         4 AYYDAALLVLKA--GDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            678899999999  99999999999999999887   5799999999999999999999999999999986   578888


Q ss_pred             HHHHHHHHHhhccccc
Q 014213          159 AERVKKELEKRGLRVN  174 (429)
Q Consensus       159 La~l~~~l~e~~~a~~  174 (429)
                      ++.++..+++...+..
T Consensus        82 ~~~~~~~~~~~~~A~~   97 (119)
T TIGR02795        82 LGMSLQELGDKEKAKA   97 (119)
T ss_pred             HHHHHHHhCChHHHHH
Confidence            8999888877666555

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.45  E-value=1.3e-06  Score=84.72  Aligned_cols=120  Identities=15%  Similarity=0.098  Sum_probs=106.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC  128 (429)
Q Consensus        49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a  128 (429)
                      ....+.++..|+-+.++....+++...|.+..    ++.-.|..+.+.  |+|.+|+..+++|..++|+++++|..+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~----ll~~~gk~~~~~--g~~~~A~~~~rkA~~l~p~d~~~~~~lgaa  143 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE----LLAAQGKNQIRN--GNFGEAVSVLRKAARLAPTDWEAWNLLGAA  143 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHH----HHHHHHHHHHHh--cchHHHHHHHHHHhccCCCChhhhhHHHHH
Confidence            34677788888888888888888887887764    555588888888  999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          129 YEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       129 y~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |..+|++++|-..|.+++++.|+++.+..+++-.+..-++...+..
T Consensus       144 ldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~  189 (257)
T COG5010         144 LDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET  189 (257)
T ss_pred             HHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999888887766655

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=5.8e-07  Score=90.46  Aligned_cols=126  Identities=29%  Similarity=0.334  Sum_probs=111.1

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CC------------CccHHHHHHHHHHHHHHcCCCCHHHHH
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLP---RN------------HIDVSYLRSNMAACYMQMGLSEYPRAI  105 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P---~~------------~~~~a~l~~nrA~~y~kl~~g~y~eAi  105 (429)
                      .+..+...++.|+..|++++|..|+..|.++++...   .+            ...+..++.|++.|-+++  +.|..|+
T Consensus       218 ~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~--~~~~~a~  295 (372)
T KOG0546|consen  218 ALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKV--KGRGGAR  295 (372)
T ss_pred             hhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccc--cCCCcce
Confidence            357888899999999999999999999999998753   11            112356788899999999  9999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       106 ~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      ..+..+++.++...++||+++.+|..+.++++|+++++.+....|++......+..+...+.+
T Consensus       296 ~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~  358 (372)
T KOG0546|consen  296 FRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQ  358 (372)
T ss_pred             eccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999999999999988888887776644

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.43  E-value=2.2e-06  Score=85.88  Aligned_cols=103  Identities=21%  Similarity=0.174  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH---------------------------------HHHHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV---------------------------------SYLRSNMAAC   92 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~---------------------------------a~l~~nrA~~   92 (429)
                      +....+|..++..|++++|+..|+++++..|.+....                                 ..++.++|.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            3455689999999999999999999999999876300                                 1222334444


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213           93 YMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP  150 (429)
Q Consensus        93 y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P  150 (429)
                      ++.+  |++++|+..|+++++++|++..+++.+|.+|+..|++++|+..+++++.+.|
T Consensus       124 ~~~~--G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         124 LEEA--GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHc--CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            4444  4555555555555555555544455555555555555555555555554444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd06395 PB1_Map2k5 PB1 domain is essential part of the mitogen-activated protein kinase kinase 5 (Map2k5, alias MEK5) one of the key member of the signaling kinases cascade which involved in angiogenesis and early cardiovascular development

Probab=98.43  E-value=4.9e-07  Score=72.27  Aligned_cols=67  Identities=21%  Similarity=0.315  Sum_probs=59.8

Q ss_pred             ceeEEEEeCCceEEEEc-cCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh
Q 014213          261 KKTVKLVFGEDIRVAQL-PLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA  327 (429)
Q Consensus       261 ~~~vK~~~~~DiR~~~i-~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~  327 (429)
                      -++||..-|+|+-|.+- |..++|.++.+.|++..|....-..-|.|||||.||+-||+||+--+++.
T Consensus         2 VIRIk~p~gg~vDw~V~~~~~L~F~DvL~~I~~vlp~aT~tAFeYEDE~gDRITVRSDeEm~AMlsyy   69 (91)
T cd06395           2 VIRIKIPNGGAVDWTVQSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSYY   69 (91)
T ss_pred             eEEEeCCCCCcccccccCcccccHHHHHHHHHHhcccccccceeeccccCCeeEecchHHHHHHHHHH
Confidence            36899999999999885 46699999999999999999999999999999999999999998666543

The PB1 domain of Map2k5 interacts with the PB1 domain of another members of kinase cascade MEKK2 (or MEKK3). A canonical PB1-PB1 interaction, involving heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The Map2k5 protein contains a type I PB1 domain.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.41  E-value=1.4e-06  Score=68.68  Aligned_cols=70  Identities=23%  Similarity=0.350  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLL---PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV  114 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~---P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel  114 (429)
                      ..+..+.+.|..|+..|+|++|+..|++|+.+.   +.+.+..+.++.|+|.||..+  |++++|+..+++|+++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRL--GDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhh
Confidence            356789999999999999999999999999873   333345688999999999999  9999999999999986

...

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.40  E-value=1.2e-06  Score=91.76  Aligned_cols=114  Identities=25%  Similarity=0.318  Sum_probs=100.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCC
Q 014213           39 EVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-LSEYPRAIHECNLALEVTPL  117 (429)
Q Consensus        39 ~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~-~g~y~eAi~~~~~ALeldP~  117 (429)
                      -.+...++.++.+||..|-.+....|+..|.+++...|...    .+|.|+|+++|+-+ .|+.-.|+.+|..|++++|.
T Consensus       368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~----~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s  443 (758)
T KOG1310|consen  368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI----YLLENRAAALMKRKWRGDSYLALRDCHVALRLNPS  443 (758)
T ss_pred             hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh----HHHHhHHHHHHhhhccccHHHHHHhHHhhccCChH
Confidence            34456778899999999999999999999999999999877    49999999999853 35777899999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213          118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA  156 (429)
Q Consensus       118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~  156 (429)
                      ..+|+|+++.|+..++++.+|+.+...+....|.+....
T Consensus       444 ~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~  482 (758)
T KOG1310|consen  444 IQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQ  482 (758)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence            999999999999999999999999887777788665433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.40  E-value=2.4e-06  Score=94.68  Aligned_cols=119  Identities=15%  Similarity=0.095  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-HHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY-SKALLK  124 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~-~kAl~~  124 (429)
                      ..+.-.++-+|-.|+|..+...+..|+...-..+ ..+-.++.+|.+|..+  |+|++|..+|.+++..+|++ .-+++.
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~-~~aes~Y~~gRs~Ha~--Gd~ekA~~yY~~s~k~~~d~~~l~~~G  347 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKS-IKAESFYQLGRSYHAQ--GDFEKAFKYYMESLKADNDNFVLPLVG  347 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHccCCCCccccccc
Confidence            4466778889999999999999999998774433 3455688899999999  99999999999999999998 888999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      +|+.|...|+++.|..+|++++...|++......++.++...+
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            9999999999999999999999999999999999999988774

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=4.7e-06  Score=88.07  Aligned_cols=124  Identities=19%  Similarity=0.230  Sum_probs=86.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------CCCHHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-------PLYSKALL  123 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-------P~~~kAl~  123 (429)
                      .|..|.+.+++.-|-..|.+|+.+.|.++-    ++.-+|.+.+..  +.|.+|+.+|..+++.-       +.|...+.
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl----v~~Elgvvay~~--~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~  459 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPL----VLHELGVVAYTY--EEYPEALKYFQKALEVIKSVLNEKIFWEPTLN  459 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcch----hhhhhhheeehH--hhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence            344444444445555555555555554442    445555555555  56666666666666221       23556689


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      ++|.+|+.++++++|+..|+++|.+.|.++.++..++-++..++....|+...-..|
T Consensus       460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL  516 (611)
T KOG1173|consen  460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL  516 (611)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998888887443333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.36  E-value=3.6e-06  Score=91.50  Aligned_cols=105  Identities=19%  Similarity=0.091  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHhCCCCHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH--ECNLALEVTPLYSKA  121 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~--~~~~ALeldP~~~kA  121 (429)
                      -+..|+..|..+..+|.+.+|...|..|+.++|++.+    ....+|.||++.  |+-.-|..  ....|+++||.+.+|
T Consensus       683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~----s~~Ala~~lle~--G~~~la~~~~~L~dalr~dp~n~ea  756 (799)
T KOG4162|consen  683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP----SMTALAELLLEL--GSPRLAEKRSLLSDALRLDPLNHEA  756 (799)
T ss_pred             hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHh--CCcchHHHHHHHHHHHhhCCCCHHH
Confidence            3455788999999999999999999999999999986    778899999999  65555555  999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                      ||.+|.++..+|+.+.|.++|..|+.+++.+|.
T Consensus       757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  757 WYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999999998863

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.35  E-value=3.8e-06  Score=84.15  Aligned_cols=99  Identities=13%  Similarity=-0.013  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----HHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY----SKAL  122 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~----~kAl  122 (429)
                      .+...|..+...|++++|+..|++++++.|.+..    ++..+|.+|...  |++++|+..+.+++...|..    ...|
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~----~~~~la~i~~~~--g~~~eA~~~l~~~l~~~~~~~~~~~~~~  189 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW----AVHAVAHVLEMQ--GRFKEGIAFMESWRDTWDCSSMLRGHNW  189 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHc--CCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence            3456788999999999999999999999999874    889999999999  99999999999999998743    2457


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      +.+|.++..+|++++|+..|++++...|.
T Consensus       190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         190 WHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence            78999999999999999999999888774

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.34  E-value=4.7e-06  Score=88.89  Aligned_cols=128  Identities=19%  Similarity=0.154  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLP----RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-----  115 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P----~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-----  115 (429)
                      +..++..|..|...++|.+|+..|++||.+.-    .+++..+.++.|+|.+|...  |+|.+|...|++|+++-     
T Consensus       241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--GKf~EA~~~~e~Al~I~~~~~~  318 (508)
T KOG1840|consen  241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--GKFAEAEEYCERALEIYEKLLG  318 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc--CChHHHHHHHHHHHHHHHHhhc
Confidence            44456799999999999999999999999764    45667889999999999999  99999999999999873     


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHHhhccccc
Q 014213          116 ---PLYSKALLKRARCYEALNRLDLAFRDVTTVLNKE-----PKN---IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       116 ---P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~-----P~n---~~a~~~La~l~~~l~e~~~a~~  174 (429)
                         |.-...+..++..+..++++++|+..+.+++++-     +.|   +.....+++++..+++...+.+
T Consensus       319 ~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~  388 (508)
T KOG1840|consen  319 ASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE  388 (508)
T ss_pred             cChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence               3345578899999999999999999999999872     233   5678888999988887666555

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.34  E-value=8.2e-06  Score=81.56  Aligned_cols=124  Identities=19%  Similarity=0.132  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH-IDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~-~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ++...-+.|-+.++|+.|++.-.+.+.+.+... ..++.+||-+|..++.-  .+.+.|+..+.+|++.+|++++|-.-+
T Consensus       143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~--~~~d~A~~~l~kAlqa~~~cvRAsi~l  220 (389)
T COG2956         143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS--SDVDRARELLKKALQADKKCVRASIIL  220 (389)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHhhCccceehhhhh
Confidence            345566778888889999988888888877543 36889999999999988  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHhhccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKN-IMAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n-~~a~~~La~l~~~l~e~~~a  172 (429)
                      |.++...|+|+.|++.++++++.+|.- +++...+..++..+++.+..
T Consensus       221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~  268 (389)
T COG2956         221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG  268 (389)
T ss_pred             hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            999999999999999999999999985 57888899999998875543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=1.2e-06  Score=94.69  Aligned_cols=120  Identities=14%  Similarity=0.127  Sum_probs=105.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY  129 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay  129 (429)
                      ..|+..+.+++|++|...++..++++|-...    .|+++|.|++++  +++..|..+|.+++.++|++..+|.+++.+|
T Consensus       490 ~~~~~~~~~~~fs~~~~hle~sl~~nplq~~----~wf~~G~~ALql--ek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  490 SLALLILSNKDFSEADKHLERSLEINPLQLG----TWFGLGCAALQL--EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             hhccccccchhHHHHHHHHHHHhhcCccchh----HHHhccHHHHHH--hhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            3445556779999999999999999998775    889999999999  9999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccc
Q 014213          130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND  175 (429)
Q Consensus       130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e  175 (429)
                      ..+++-.+|...+.+|++.+-.+..+|++..-+...+++...+...
T Consensus       564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A  609 (777)
T KOG1128|consen  564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKA  609 (777)
T ss_pred             HHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHH
Confidence            9999999999999999999988889999888888888776666553

>TIGR00540 hemY_coli hemY protein

Probab=98.31  E-value=2e-05  Score=81.93  Aligned_cols=126  Identities=18%  Similarity=0.051  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-HH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS-KA  121 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~-kA  121 (429)
                      +++.....+|...+..|+|+.|.....++.+..|...    ..+...|.++.++  |+++.|...+.++.+..|++. .+
T Consensus        82 ~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~----~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~  155 (409)
T TIGR00540        82 RKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV----LNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILV  155 (409)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHH
Confidence            4677778899999999999999999999999888654    3556678888888  999999999999999999985 46


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ...++..+...|+++.|+..+++.++..|+++.++..+..++...++...+..
T Consensus       156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~  208 (409)
T TIGR00540       156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD  208 (409)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence            66679999999999999999999999999999999999999999988776655

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=8.4e-06  Score=80.72  Aligned_cols=116  Identities=16%  Similarity=0.076  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HH
Q 014213           60 DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNR---LD  136 (429)
Q Consensus        60 dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~---~d  136 (429)
                      ..+..+...+.-|..+|+|.+    -|..+|.+||.+  +++..|...|.+|+++.|+++..+..+|.+++....   -.
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~e----gW~~Lg~~ym~~--~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta  210 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAE----GWDLLGRAYMAL--GRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTA  210 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHh--cchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccH
Confidence            366777888999999999997    888999999999  999999999999999999999999999998876653   56


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCC
Q 014213          137 LAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELP  181 (429)
Q Consensus       137 eAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~  181 (429)
                      +|...|++++.++|+|..++..++......++...+...-..-|+
T Consensus       211 ~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         211 KARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            899999999999999999999999999999888887774343443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.30  E-value=7.8e-06  Score=92.09  Aligned_cols=114  Identities=14%  Similarity=0.070  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +...|..+...|+|++|+..|+++++.+|.++.    ++..++.+|..+  +++++|+..+.+++..+|.+... ..++.
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~----~l~gLa~~y~~~--~q~~eAl~~l~~l~~~dp~~~~~-l~lay  177 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPD----LISGMIMTQADA--GRGGVVLKQATELAERDPTVQNY-MTLSY  177 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHhhc--CCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence            444577888899999999999999999999875    667788899998  99999999999999999985554 55566


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      ++..++++.+|+..|++++.++|++..++..+-.+...++-
T Consensus       178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~  218 (822)
T PRK14574        178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI  218 (822)
T ss_pred             HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            66667888779999999999999999988887777666643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.29  E-value=1.4e-05  Score=88.17  Aligned_cols=100  Identities=20%  Similarity=0.189  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      ...|...|..|=++|+.+.|+..+-.|-.++|.+.+    .|..++....++  |++.+|+-+|.+||+++|.+.+.+++
T Consensus       173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e----~W~~ladls~~~--~~i~qA~~cy~rAI~~~p~n~~~~~e  246 (895)
T KOG2076|consen  173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE----LWKRLADLSEQL--GNINQARYCYSRAIQANPSNWELIYE  246 (895)
T ss_pred             hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhc--ccHHHHHHHHHHHHhcCCcchHHHHH
Confidence            455778899999999999999999999999999997    888889988898  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEP  150 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P  150 (429)
                      ++..|..+|++..|+..|.+++.+.|
T Consensus       247 rs~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  247 RSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.29  E-value=8e-06  Score=90.66  Aligned_cols=119  Identities=14%  Similarity=0.111  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      -+|+.++..|..|+..|+|++|..+|.+++..+|++..   ..++.+|..|+..  |+++.|+..|++++...|++..++
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~---l~~~GlgQm~i~~--~dle~s~~~fEkv~k~~p~~~etm  379 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV---LPLVGLGQMYIKR--GDLEESKFCFEKVLKQLPNNYETM  379 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc---ccccchhHHHHHh--chHHHHHHHHHHHHHhCcchHHHH
Confidence            45777999999999999999999999999999999853   4577788888888  999999999999999999999999


Q ss_pred             HHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          123 LKRARCYEALN----RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       123 ~~rA~ay~~LG----~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      .-+|..|...+    ..+.|...+.+++...|.+..++..++.++..-
T Consensus       380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~  427 (1018)
T KOG2002|consen  380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT  427 (1018)
T ss_pred             HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence            99999999987    678999999999999999999999999987654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.27  E-value=1.1e-05  Score=91.01  Aligned_cols=115  Identities=12%  Similarity=-0.076  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH----
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS----  119 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~----  119 (429)
                      ....+....+.+...+++++|+..+..+++..|+...    +|+.+|..|++.  +++.+|...  .++.+-+.+.    
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~----~yy~~G~l~~q~--~~~~~~~lv--~~l~~~~~~~~~~~  101 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS----ALYISGILSLSR--RPLNDSNLL--NLIDSFSQNLKWAI  101 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee----hHHHHHHHHHhh--cchhhhhhh--hhhhhcccccchhH
Confidence            3456778888888999999999999999999999885    888889899888  888877766  6777666665    


Q ss_pred             ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          120 ---------------KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       120 ---------------kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                                     .||+.+|.||..+|++++|...|+++|.++|+|+.++..++-.+...
T Consensus       102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720        102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence                           89999999999999999999999999999999999999999877666

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.25  E-value=1e-05  Score=86.36  Aligned_cols=128  Identities=18%  Similarity=0.118  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR----NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT----  115 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~----~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld----  115 (429)
                      -|..+.++|..|+..|+|++|..+|++|+++.-.    ++++.+..+++++..+..+  ++|++|+..+.+++.+-    
T Consensus       282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~--~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSM--NEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHhhc
Confidence            4567899999999999999999999999998643    4556788999999999999  99999999999998763    


Q ss_pred             -C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHhhcccc
Q 014213          116 -P---LYSKALLKRARCYEALNRLDLAFRDVTTVLNKE--------PKNIMAAEIAERVKKELEKRGLRV  173 (429)
Q Consensus       116 -P---~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~--------P~n~~a~~~La~l~~~l~e~~~a~  173 (429)
                       +   .-.+.+-++|.+|..+|+|.+|.+.|++|+.+.        +.....+..++..+..++.+..+.
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence             2   336789999999999999999999999999874        334567778888887776655443

>TIGR00540 hemY_coli hemY protein

Probab=98.25  E-value=1.6e-05  Score=82.55  Aligned_cols=126  Identities=8%  Similarity=-0.110  Sum_probs=102.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH--HH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS--KA  121 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~--kA  121 (429)
                      ....+...|..+...|++++|+..++++++..|++....  +..-+...+  +.+++...++..++++++..|+++  ..
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~--~~~l~~~~~--l~~~~~~~~~~~~e~~lk~~p~~~~~~l  337 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS--LPLCLPIPR--LKPEDNEKLEKLIEKQAKNVDDKPKCCI  337 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch--hHHHHHhhh--cCCCChHHHHHHHHHHHHhCCCChhHHH
Confidence            345567788999999999999999999999999877311  012222233  334899999999999999999999  88


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          122 LLKRARCYEALNRLDLAFRDVT--TVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~--kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +..+|.++..+|+|++|.++|+  .+++..|++..+ ..++.++..+++...+..
T Consensus       338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~A~~  391 (409)
T TIGR00540       338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDKAEAAA  391 (409)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHHHHH
Confidence            8899999999999999999999  588888987764 489999998887666655

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.24  E-value=3.3e-05  Score=80.10  Aligned_cols=125  Identities=14%  Similarity=0.044  Sum_probs=102.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHH-HHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNM-AACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nr-A~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      +++.....+|...+..|+|+.|.....++-+..+ ++    .++..+ +.+..+.  |+++.|...+.++.+.+|++.-+
T Consensus        82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p----~l~~llaA~aA~~~--g~~~~A~~~l~~A~~~~~~~~~~  154 (398)
T PRK10747         82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADHAE-QP----VVNYLLAAEAAQQR--GDEARANQHLERAAELADNDQLP  154 (398)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccc-ch----HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCcchHH
Confidence            5777888999999999999999966666544322 22    244444 4444777  99999999999999999998544


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          122 -LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       122 -l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                       ....+..+...|+++.|+..+++++..+|+++.++..+..++...++...+..
T Consensus       155 ~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~  208 (398)
T PRK10747        155 VEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD  208 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence             45569999999999999999999999999999999999999999988776653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=2e-06  Score=86.00  Aligned_cols=117  Identities=15%  Similarity=0.103  Sum_probs=91.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH------------------------------HHHHHHHHHHHHHcCCCC
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDV------------------------------SYLRSNMAACYMQMGLSE  100 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~------------------------------a~l~~nrA~~y~kl~~g~  100 (429)
                      .+..+-..+++++|+++|..++++.|.+.+.+                              .-+++|+|.|-+--  ++
T Consensus       296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya--qQ  373 (478)
T KOG1129|consen  296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA--QQ  373 (478)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh--cc
Confidence            34444445556666666666666665543311                              24899999999888  99


Q ss_pred             HHHHHHHHHHHHHhCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213          101 YPRAIHECNLALEVTP--L-YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus       101 y~eAi~~~~~ALeldP--~-~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                      |+-++..+.+|+...-  . -...||++|.+....|++..|.++|+-||..+|+|.+++.+++-+..+-++-
T Consensus       374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCch
Confidence            9999999999998753  2 4678999999999999999999999999999999999999999988766543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.21  E-value=6.5e-06  Score=88.12  Aligned_cols=139  Identities=12%  Similarity=0.013  Sum_probs=113.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .++.+....|..++|...+...+.+|.-.|.+++    .+...|..+..|  |+-++|...+..++..|+...-.|.-+|
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge----slAmkGL~L~~l--g~~~ea~~~vr~glr~d~~S~vCwHv~g   82 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE----SLAMKGLTLNCL--GKKEEAYELVRLGLRNDLKSHVCWHVLG   82 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch----hHHhccchhhcc--cchHHHHHHHHHHhccCcccchhHHHHH
Confidence            4677788888899999999999999999998887    556678888888  9999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccc
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAP  194 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a  194 (429)
                      ..+..-.+|++|+.+|+.||.++|+|.+.+.-++-++..|++........-.-|.   ..|.--+.|-
T Consensus        83 l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq---l~~~~ra~w~  147 (700)
T KOG1156|consen   83 LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ---LRPSQRASWI  147 (700)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH---hhhhhHHHHH
Confidence            9999999999999999999999999999999999998888876655554433443   3344444443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=2.9e-05  Score=75.43  Aligned_cols=114  Identities=19%  Similarity=0.071  Sum_probs=101.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC  128 (429)
Q Consensus        49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a  128 (429)
                      +-.|..+=..|+|++|+++|+..|+-+|.+..    +|-..-+..-.+  |.--+||...+.-++.-+.+..||..++..
T Consensus        90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v----~~KRKlAilka~--GK~l~aIk~ln~YL~~F~~D~EAW~eLaei  163 (289)
T KOG3060|consen   90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTV----IRKRKLAILKAQ--GKNLEAIKELNEYLDKFMNDQEAWHELAEI  163 (289)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHhccCcchhH----HHHHHHHHHHHc--CCcHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34577778899999999999999999998874    555554555556  888999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          129 YEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       129 y~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      |..+|+|+.|.-+++.++-+.|.++.....++.++.-++.
T Consensus       164 Y~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg  203 (289)
T KOG3060|consen  164 YLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG  203 (289)
T ss_pred             HHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999888864

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.15  E-value=8.7e-06  Score=81.83  Aligned_cols=94  Identities=23%  Similarity=0.299  Sum_probs=74.5

Q ss_pred             cCCCCceeEEEEeCCceEEEEccCCccHHHHHHHHHhhC--CCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCCc-
Q 014213          256 EDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRF--PSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGS-  332 (429)
Q Consensus       256 ~~~~~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf--~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~-  332 (429)
                      ++....+++|++|+.||....+.+.++|.+|...|++--  -....|++||.|||||-+||+|+.||..|+.++..... 
T Consensus        10 ~g~~~~vrlka~y~g~i~i~~~~p~~~~e~~~~~vrd~c~~h~~q~~t~kwideegdp~tv~sqmeleea~r~~~~~~d~   89 (593)
T KOG0695|consen   10 EGSGGRVRLKAHYGGDIFITSVDPATTFEELCEEVRDMCRLHQQQPLTLKWIDEEGDPCTVSSQMELEEAFRLARQCRDE   89 (593)
T ss_pred             CCCCccEEEEEeecCcEEEEeccCcccHHHHHHHHHHHHHHhhcCCceeEeecCCCCcceechhhhHHHHHHHHHhcccc
Confidence            344568999999999999999999999999999999854  45567999999999999999999999999998755444 


Q ss_pred             -EEEEEEeeCCCCchhhhh
Q 014213          333 -VRLFVVGVNPLQDPLYER  350 (429)
Q Consensus       333 -~rl~v~e~~~~~e~~~~~  350 (429)
                       +-++|....| .-|.++.
T Consensus        90 el~ihvf~~~p-e~pglpc  107 (593)
T KOG0695|consen   90 ELIIHVFPSTP-EQPGLPC  107 (593)
T ss_pred             ceEEEEccCCC-CCCCCCC
Confidence             4444443333 3454443

>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis

Probab=98.14  E-value=1.1e-05  Score=65.76  Aligned_cols=57  Identities=26%  Similarity=0.434  Sum_probs=46.9

Q ss_pred             CceEEEEcc----CCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh
Q 014213          270 EDIRVAQLP----LNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA  327 (429)
Q Consensus       270 ~DiR~~~i~----~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~  327 (429)
                      -+||-+.|.    ...+|.+|...+++.|+ ...+.+-|+|.|||||-|-||+|+.+-+.-+
T Consensus        13 ~~~rdi~vee~l~~~P~~kdLl~lmr~~f~-~~dIaLNYrD~EGDLIRllddeDv~LMV~~~   73 (92)
T cd06399          13 STIRDIAVEEDLSSTPLLKDLLELTRREFQ-REDIALNYRDAEGDLIRLLSDEDVALMVRQS   73 (92)
T ss_pred             ccccceEeecccccCccHHHHHHHHHHHhc-hhheeeeeecCCCCEEEEcchhhHHHHHHHH
Confidence            345555543    44699999999999995 6699999999999999999999997776655

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.06  E-value=4.6e-06  Score=67.09  Aligned_cols=75  Identities=24%  Similarity=0.284  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213           99 SEYPRAIHECNLALEVTPL--YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~--~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ++|+.|+..++++++.+|.  +...++.+|.||+.+|+|++|+..+++ +..+|.+......+++++..+++...++.
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            8999999999999999995  466788899999999999999999999 88999999999999999999988776654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.05  E-value=7.1e-05  Score=74.98  Aligned_cols=122  Identities=16%  Similarity=0.151  Sum_probs=103.3

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-HH
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY-SK  120 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~-~k  120 (429)
                      +..|+-+-+.+..+....+++.|+..+.+|+..+|+..-    +-..+|..++..  |+|+.|+..++.+++.||++ +.
T Consensus       177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR----Asi~lG~v~~~~--g~y~~AV~~~e~v~eQn~~yl~e  250 (389)
T COG2956         177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR----ASIILGRVELAK--GDYQKAVEALERVLEQNPEYLSE  250 (389)
T ss_pred             hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee----hhhhhhHHHHhc--cchHHHHHHHHHHHHhChHHHHH
Confidence            367888999999999999999999999999999998874    666789999999  99999999999999999998 55


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                      .+-.+..||..+|+.++.+..+.++....++. .+...+..+...+....
T Consensus       251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~-~~~l~l~~lie~~~G~~  299 (389)
T COG2956         251 VLEMLYECYAQLGKPAEGLNFLRRAMETNTGA-DAELMLADLIELQEGID  299 (389)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc-cHHHHHHHHHHHhhChH
Confidence            78888999999999999999999999988764 34444444444443333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.04  E-value=4.2e-05  Score=79.50  Aligned_cols=108  Identities=19%  Similarity=0.121  Sum_probs=96.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 014213           58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDL  137 (429)
Q Consensus        58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~de  137 (429)
                      .++|+.|+..|++..+.+|.       +..-+|.+|+.+  ++..+|+....++|..+|.+...+..-|..|...++++.
T Consensus       182 t~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~--~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE-------VAVLLARVYLLM--NEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            56799999999998888774       334578888888  899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          138 AFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       138 Al~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |+..+++|+.+.|++...|..|+.++..+++...|+.
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl  289 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALL  289 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999999999999999999999999999988777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.5e-05  Score=80.32  Aligned_cols=112  Identities=14%  Similarity=0.060  Sum_probs=97.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..|+--|..+|...+|..|+.+-.++|+.+|++.+    ++...|.++.++  ++.++|+-.|+.|..+.|.....|
T Consensus       298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~----alilKG~lL~~~--~R~~~A~IaFR~Aq~Lap~rL~~Y  371 (564)
T KOG1174|consen  298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE----ALILKGRLLIAL--ERHTQAVIAFRTAQMLAPYRLEIY  371 (564)
T ss_pred             cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch----HHHhccHHHHhc--cchHHHHHHHHHHHhcchhhHHHH
Confidence            34667788888888889999999999999999998886    778888888888  899999999999999999888889


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAE  160 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La  160 (429)
                      -.+-.||.+.|++.+|+-..+.++..-|+++.++..++
T Consensus       372 ~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  372 RGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            88889999999999999888888888888888877775

>PRK11906 transcriptional regulator; Provisional

Probab=98.02  E-value=5e-05  Score=79.45  Aligned_cols=92  Identities=12%  Similarity=-0.069  Sum_probs=84.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 014213           58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDL  137 (429)
Q Consensus        58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~de  137 (429)
                      ..+-.+|+..-.+|++++|.|+    .++..+|.++...  ++++.|+..+++|+.++|++..+||.+|..+...|+.++
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da----~a~~~~g~~~~~~--~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~  390 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDG----KILAIMGLITGLS--GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEE  390 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHhh--cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHH
Confidence            3456789999999999999998    4888899988888  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHH
Q 014213          138 AFRDVTTVLNKEPKNIMA  155 (429)
Q Consensus       138 Al~~~~kAL~l~P~n~~a  155 (429)
                      |+..+++|+.++|.-..+
T Consensus       391 a~~~i~~alrLsP~~~~~  408 (458)
T PRK11906        391 ARICIDKSLQLEPRRRKA  408 (458)
T ss_pred             HHHHHHHHhccCchhhHH
Confidence            999999999999976544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.01  E-value=6.8e-05  Score=77.71  Aligned_cols=122  Identities=9%  Similarity=-0.071  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ......+..+...|++++|.....++++..| ++.        +...|..+..+++++++..++..++..|+++..++.+
T Consensus       264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~--------l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~l  334 (398)
T PRK10747        264 ALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER--------LVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTL  334 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH--------HHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            3455678999999999999999999999444 442        2223333333899999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTV  177 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~  177 (429)
                      |..+...++|++|..+|++++++.|++.. ...++.++..+++...+...+.
T Consensus       335 grl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~  385 (398)
T PRK10747        335 GQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRR  385 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999998765 4578999999988777766443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.99  E-value=6.5e-05  Score=65.60  Aligned_cols=91  Identities=18%  Similarity=0.075  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPL---YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK---NIMAAEI  158 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~---~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~---n~~a~~~  158 (429)
                      +++++|.+|-.+  |+.++|+..|++|+.....   -..+++.+|.+|..+|++++|+..+++++...|+   +......
T Consensus         3 ~~~~~A~a~d~~--G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    3 ALYELAWAHDSL--GREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             hHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            678999999999  9999999999999997644   3679999999999999999999999999999898   7778878


Q ss_pred             HHHHHHHHHhhcccccccc
Q 014213          159 AERVKKELEKRGLRVNDTV  177 (429)
Q Consensus       159 La~l~~~l~e~~~a~~e~~  177 (429)
                      ++.+...+++...++....
T Consensus        81 ~Al~L~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLL   99 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHH
Confidence            8888888887777766443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.98  E-value=0.00011  Score=76.28  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      ..-.+..++..++..+|+..+.++|...|.+..    ++...|..+++.  ++|+.|+..+++|+.+.|+...+|+.+|.
T Consensus       203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~----LL~~Qa~fLl~k--~~~~lAL~iAk~av~lsP~~f~~W~~La~  276 (395)
T PF09295_consen  203 AVLLARVYLLMNEEVEAIRLLNEALKENPQDSE----LLNLQAEFLLSK--KKYELALEIAKKAVELSPSEFETWYQLAE  276 (395)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhc--CCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            445688888899999999999999999998874    888889999998  99999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 014213          128 CYEALNRLDLAFRDVTTVLN  147 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~  147 (429)
                      ||..+|+|++|+..++.+--
T Consensus       277 ~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  277 CYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HHHhcCCHHHHHHHHhcCcC
Confidence            99999999999977664433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.97  E-value=0.00027  Score=61.63  Aligned_cols=99  Identities=14%  Similarity=0.221  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--------VSYLRSNMAACYMQMGLSEYPRAIHECNLALE------  113 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--------~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe------  113 (429)
                      ....|...++.|.|++|...|.+|++..-.-++.        -+.+|..++.++..|  |+|++++....+||.      
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L--gry~e~L~sA~~aL~YFNRRG   89 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL--GRYDECLQSADRALRYFNRRG   89 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHhhcc
Confidence            3456778889999999999999999987544331        367889999999999  999999999999984      


Q ss_pred             -hCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          114 -VTPL----YSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       114 -ldP~----~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                       ++.+    |+.+.+++|.++..+|+.++|+..|+++-.+
T Consensus        90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence             4444    6778899999999999999999999988765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.97  E-value=8.6e-05  Score=79.85  Aligned_cols=87  Identities=15%  Similarity=0.082  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHh--CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 014213           61 HGGALLKYEKALKL--LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA  138 (429)
Q Consensus        61 yeeAl~~Y~kALel--~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deA  138 (429)
                      ...|.....+++.+  +|.++    .+|.-+|..++..  |++++|...+++|+.++| +..+|..+|.+|...|++++|
T Consensus       400 l~~a~~~~~~a~al~~~~~~~----~~~~ala~~~~~~--g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA  472 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLP----RIYEILAVQALVK--GKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLA  472 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCCh----HHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHH
Confidence            44556666666664  44444    4777788888877  999999999999999999 578999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHH
Q 014213          139 FRDVTTVLNKEPKNIM  154 (429)
Q Consensus       139 l~~~~kAL~l~P~n~~  154 (429)
                      +..|++|+.++|.++.
T Consensus       473 ~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        473 ADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHhcCCCCch
Confidence            9999999999999875

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=7.2e-05  Score=76.78  Aligned_cols=97  Identities=14%  Similarity=0.125  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+.+.+..+.+.++|..|+..++++|+++|+|.-    +++.+|.||+.+  ++|+.|+.+|++|++++|.|-.+..-+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K----ALyRrG~A~l~~--~e~~~A~~df~ka~k~~P~Nka~~~el  331 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK----ALYRRGQALLAL--GEYDLARDDFQKALKLEPSNKAARAEL  331 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh----HHHHHHHHHHhh--ccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            44678899999999999999999999999999995    999999999999  999999999999999999998888888


Q ss_pred             HHHHHHcCCHHHH-HHHHHHHHHh
Q 014213          126 ARCYEALNRLDLA-FRDVTTVLNK  148 (429)
Q Consensus       126 A~ay~~LG~~deA-l~~~~kAL~l  148 (429)
                      ..|.....++.+. -+.|.+.+..
T Consensus       332 ~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  332 IKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc
Confidence            7777776666544 5556655554

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.92  E-value=3e-05  Score=77.72  Aligned_cols=123  Identities=15%  Similarity=0.041  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +......|-.-.+...|+..|.+.|+..|.+.    ++++..|..|-.|  +++++|++.|..++.++|.++.++--.|.
T Consensus       259 fllLskvY~ridQP~~AL~~~~~gld~fP~~V----T~l~g~ARi~eam--~~~~~a~~lYk~vlk~~~~nvEaiAcia~  332 (478)
T KOG1129|consen  259 FLLLSKVYQRIDQPERALLVIGEGLDSFPFDV----TYLLGQARIHEAM--EQQEDALQLYKLVLKLHPINVEAIACIAV  332 (478)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhhhhhcCCchh----hhhhhhHHHHHHH--HhHHHHHHHHHHHHhcCCccceeeeeeee
Confidence            33444445555555555555555555555544    3556666666666  66666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT  176 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~  176 (429)
                      -|+.-++.+.|+.+|++.|++--.+++...+++.|...-++........
T Consensus       333 ~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  333 GYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             ccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence            6666666666666666666666666666666666665555555555433

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.00022  Score=69.49  Aligned_cols=114  Identities=17%  Similarity=0.138  Sum_probs=100.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC  128 (429)
Q Consensus        49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a  128 (429)
                      +.+-..+-..|+--+|+.....-++..+++++    +|..+|..|+.+  ++|+.|.-++++.+-++|-++..+.++|..
T Consensus       124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E----AW~eLaeiY~~~--~~f~kA~fClEE~ll~~P~n~l~f~rlae~  197 (289)
T KOG3060|consen  124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQE----AWHELAEIYLSE--GDFEKAAFCLEELLLIQPFNPLYFQRLAEV  197 (289)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH----HHHHHHHHHHhH--hHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            33444455667777999999999999999997    999999999999  999999999999999999999999999999


Q ss_pred             HHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          129 YEALN---RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       129 y~~LG---~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      ++-+|   ++..|..+|.++++++|.+..++..+-.+..++.+
T Consensus       198 ~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~  240 (289)
T KOG3060|consen  198 LYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ  240 (289)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence            99888   57789999999999999888888877777666643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.91  E-value=6.7e-05  Score=80.56  Aligned_cols=125  Identities=12%  Similarity=0.013  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      +.+.+--.|..+...|+-++|..+...+++.++.++.    +|--+|..+-.-  .+|++||.+|+.||.++|+|...|+
T Consensus        40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v----CwHv~gl~~R~d--K~Y~eaiKcy~nAl~~~~dN~qilr  113 (700)
T KOG1156|consen   40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV----CWHVLGLLQRSD--KKYDEAIKCYRNALKIEKDNLQILR  113 (700)
T ss_pred             cchhHHhccchhhcccchHHHHHHHHHHhccCcccch----hHHHHHHHHhhh--hhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            3344556789999999999999999999999999995    999999999888  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      -++....++++|+.....-.+.|++.|++...|..++.....++++..+..
T Consensus       114 DlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen  114 DLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988777665

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=0.00014  Score=74.98  Aligned_cols=142  Identities=13%  Similarity=0.126  Sum_probs=114.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHH-------------------
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA-------------------  104 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eA-------------------  104 (429)
                      ....|.-+|+.+.+.+++++|+-.|..|+.+.|..-.    +|-.+-.||+..  +.+.+|                   
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~----~Y~GL~hsYLA~--~~~kEA~~~An~~~~~~~~sA~~Lt  406 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE----IYRGLFHSYLAQ--KRFKEANALANWTIRLFQNSARSLT  406 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH----HHHHHHHHHHhh--chHHHHHHHHHHHHHHhhcchhhhh
Confidence            3456888999999999999999999999999997764    666677777766  555554                   


Q ss_pred             -----------------HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          105 -----------------IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       105 -----------------i~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                                       ...++++|.++|.|.+|...+|..+..-|++.+++..++++|..-|+. ..+..++.+..+..
T Consensus       407 L~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~N  485 (564)
T KOG1174|consen  407 LFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQN  485 (564)
T ss_pred             hhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhh
Confidence                             445555566788999999999999999999999999999999988865 57788899999999


Q ss_pred             hhccccccccccCCCCCCCCCcccccch
Q 014213          168 KRGLRVNDTVIELPPEYVEPPVTSIAPK  195 (429)
Q Consensus       168 e~~~a~~e~~~~L~p~~~~P~~~~~~a~  195 (429)
                      +.+.++..+...|.   .+|.....+.+
T Consensus       486 e~Q~am~~y~~ALr---~dP~~~~sl~G  510 (564)
T KOG1174|consen  486 EPQKAMEYYYKALR---QDPKSKRTLRG  510 (564)
T ss_pred             hHHHHHHHHHHHHh---cCccchHHHHH
Confidence            98888887777775   55666544433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.89  E-value=2.5e-05  Score=84.67  Aligned_cols=76  Identities=17%  Similarity=0.170  Sum_probs=73.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213           99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ++|.++...++..++++|-....||++|.|..+++++..|..+|.+++.++|+|..+|.++..++..++++..+..
T Consensus       499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR  574 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998887776

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.87  E-value=0.00058  Score=66.66  Aligned_cols=125  Identities=18%  Similarity=0.179  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---H
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK---A  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k---A  121 (429)
                      +..|.++|...++.|+|.+|+..|+......|.++-. -.+...++.++++-  ++|+.|+...++-+.+.|.++.   +
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~--~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKN--GEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            4689999999999999999999999999999976632 45667889999998  9999999999999999998755   6


Q ss_pred             HHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhhccc
Q 014213          122 LLKRARCYEALNR--------LDLAFRDVTTVLNKEPKNI---MAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       122 l~~rA~ay~~LG~--------~deAl~~~~kAL~l~P~n~---~a~~~La~l~~~l~e~~~a  172 (429)
                      +|.+|.++...=+        ..+|+..|+.++.--|++.   .+...+..+...|.+...+
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~  172 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA  172 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            8888988764432        4589999999999999975   4555555555666544433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.83  E-value=3.9e-05  Score=54.58  Aligned_cols=42  Identities=29%  Similarity=0.262  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|+.++..+++
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456666777777777777777777777777777666666554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.82  E-value=9e-05  Score=74.04  Aligned_cols=124  Identities=14%  Similarity=0.058  Sum_probs=78.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--LSEYPRAIHECNLALEVTPLYSKALLKRARC  128 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a  128 (429)
                      .-..|+..++++.|...+..+-+.+.+ .     +..+++.+|..+.  -..+.+|...|+...+..+..+..+..+|.|
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~-----~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~  210 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQIDED-S-----ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC  210 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCCSCC-H-----HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-H-----HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            344667777888887777776665432 2     3445555444432  2357788888887666666777777778888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          129 YEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       129 y~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      +..+|+|++|...+..|+..+|+++.++.++..+...++....+.......|
T Consensus       211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            8888888888888888888888888777777777666666644444333334

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.81  E-value=3.5e-05  Score=51.33  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      ++|+++|.+|..+|++++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45556666666666666666666666666554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.79  E-value=6e-05  Score=84.05  Aligned_cols=129  Identities=15%  Similarity=0.089  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH--------------------------------HHHHHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV--------------------------------SYLRSNMAA   91 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~--------------------------------a~l~~nrA~   91 (429)
                      .|..+--.|..|..--|...|..+|++|.++++.+.+..                                ..-|..+|.
T Consensus       491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP  570 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence            345566778888877788899999999999998765421                                112344777


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213           92 CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL  171 (429)
Q Consensus        92 ~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~  171 (429)
                      .|+.-  +++..|+.+++-|++.+|.+..+|..+|.+|-..|+|.-|++.|.+|..++|.+.-+..-.+.+...+++...
T Consensus       571 yyLea--~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  571 YYLEA--HNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             cccCc--cchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence            77776  8999999999999999999999999999999999999999999999999999998888888888888887666


Q ss_pred             ccc
Q 014213          172 RVN  174 (429)
Q Consensus       172 a~~  174 (429)
                      ++.
T Consensus       649 ald  651 (1238)
T KOG1127|consen  649 ALD  651 (1238)
T ss_pred             HHH
Confidence            655

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.79  E-value=0.00096  Score=58.83  Aligned_cols=101  Identities=20%  Similarity=0.179  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc------c------------HHHHHHHHHHHHHHcCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI------D------------VSYLRSNMAACYMQMGLSEYPRAIH  106 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~------~------------~a~l~~nrA~~y~kl~~g~y~eAi~  106 (429)
                      -..+...|......++...++..|.+|+.+...+.-      .            ...+...++..+...  |++++|+.
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~--~~~~~a~~   83 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEA--GDYEEALR   83 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHH
Confidence            345666788888999999999999999998754321      1            134566677778888  99999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213          107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN  147 (429)
Q Consensus       107 ~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~  147 (429)
                      .|.+++.++|.+-.+|..+-.+|..+|++.+|+..|+++..
T Consensus        84 ~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   84 LLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.78  E-value=0.0002  Score=70.63  Aligned_cols=90  Identities=14%  Similarity=-0.041  Sum_probs=76.9

Q ss_pred             HHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 014213           84 YLRSNMAACY-MQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAA  156 (429)
Q Consensus        84 ~l~~nrA~~y-~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n---~~a~  156 (429)
                      ..+++.|..+ ++.  ++|++|+..|+..+...|+.   +.++|.+|.+|+..|+|++|+..|++++...|++   +.++
T Consensus       143 ~~~Y~~A~~l~~~~--~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDK--SRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            4566777776 556  89999999999999999998   5899999999999999999999999999998875   6777


Q ss_pred             HHHHHHHHHHHhhcccccc
Q 014213          157 EIAERVKKELEKRGLRVND  175 (429)
Q Consensus       157 ~~La~l~~~l~e~~~a~~e  175 (429)
                      ..++.++..+++...+...
T Consensus       221 ~klg~~~~~~g~~~~A~~~  239 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAV  239 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHH
Confidence            7778888888776666653

>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development

Probab=97.76  E-value=0.00026  Score=56.19  Aligned_cols=74  Identities=18%  Similarity=0.321  Sum_probs=64.7

Q ss_pred             eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh---ccCCcEEEEEE
Q 014213          262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA---EMQGSVRLFVV  338 (429)
Q Consensus       262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~---~~~~~~rl~v~  338 (429)
                      ++||+-|.++-|.+++|.-+-|.||..++...|+  -.+.+.|.. ..=+|.|.+++||+-|+...   ..++++||.+.
T Consensus         1 vRiKfE~~gEKRIi~f~RPvkf~dl~~kv~~afG--q~mdl~ytn-~eL~iPl~~Q~DLDkAie~ld~s~~~ksLRilL~   77 (79)
T cd06405           1 VRIKFEHNGEKRIIQFPRPVKFKDLQQKVTTAFG--QPMDLHYTN-NELLIPLKNQEDLDRAIELLDRSPHMKSLRILLS   77 (79)
T ss_pred             CeEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeEEEec-ccEEEeccCHHHHHHHHHHHccCccccceeEeEe
Confidence            4899999999999999999999999999999994  578999998 44889999999999998765   44567888765

The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.75  E-value=0.00096  Score=62.85  Aligned_cols=124  Identities=19%  Similarity=0.183  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHhCC
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG---------LSEYPRAIHECNLALEVTP  116 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~---------~g~y~eAi~~~~~ALeldP  116 (429)
                      ..+...|..+|+.|+|..|+..|++-++..|+++ ....+++.+|.|++.+.         .....+|+..|+..+..-|
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP  121 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP  121 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc
Confidence            4467889999999999999999999999999877 45677888999987761         1224589999999999999


Q ss_pred             CCHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHHhhc
Q 014213          117 LYSKA-----------------LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA---EIAERVKKELEKRG  170 (429)
Q Consensus       117 ~~~kA-----------------l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~---~~La~l~~~l~e~~  170 (429)
                      +...+                 -+..|.-|...|.|..|+.-|+.++.--|+...+.   ..+...+..++...
T Consensus       122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~  195 (203)
T PF13525_consen  122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ  195 (203)
T ss_dssp             TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence            85432                 25568889999999999999999999999987654   44445555554433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.75  E-value=0.00017  Score=81.50  Aligned_cols=97  Identities=13%  Similarity=0.132  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-----cH----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-----DV----------SYLRSNMAACYMQMGLSEYPRAIHECNLA  111 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-----~~----------a~l~~nrA~~y~kl~~g~y~eAi~~~~~A  111 (429)
                      .+.-.|..+++.+++.+|...  .++...+.+..     ..          -.+++.+|.||-+|  |++++|+..|+++
T Consensus        67 ~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~--g~~~ka~~~yer~  142 (906)
T PRK14720         67 ALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKL--NENKKLKGVWERL  142 (906)
T ss_pred             hHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHc--CChHHHHHHHHHH
Confidence            366778888888888888776  77777766551     00          14888999999999  9999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       112 LeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      |+++|+++.++.++|..|... ++++|+.++.+|+..
T Consensus       143 L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        143 VKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence            999999999999999999999 999999999999875

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.75  E-value=0.00057  Score=73.47  Aligned_cols=37  Identities=16%  Similarity=0.131  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH   79 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~   79 (429)
                      ++...+-.+|..+++.|++++|...|...|..+|.+.
T Consensus        36 Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~   72 (517)
T PF12569_consen   36 DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY   72 (517)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence            5555677789999999999999999999999998876

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=9.7e-05  Score=69.83  Aligned_cols=90  Identities=21%  Similarity=0.191  Sum_probs=78.6

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           90 AACYMQMGLSEYPRAIHECNLALEVTPLYS-----KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus        90 A~~y~kl~~g~y~eAi~~~~~ALeldP~~~-----kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      |.-++.-  |+|++|..-|..||++.|..+     -.|.++|.|+..++.++.|+.++.+|+.|+|.+..++...+.++.
T Consensus       102 GN~~F~n--gdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye  179 (271)
T KOG4234|consen  102 GNELFKN--GDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE  179 (271)
T ss_pred             HHHhhhc--ccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence            4455555  999999999999999998754     368999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccccccccCC
Q 014213          165 ELEKRGLRVNDTVIELP  181 (429)
Q Consensus       165 ~l~e~~~a~~e~~~~L~  181 (429)
                      .+.....++.++-.-|.
T Consensus       180 k~ek~eealeDyKki~E  196 (271)
T KOG4234|consen  180 KMEKYEEALEDYKKILE  196 (271)
T ss_pred             hhhhHHHHHHHHHHHHH
Confidence            99888888886654443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.70  E-value=0.00033  Score=69.28  Aligned_cols=124  Identities=18%  Similarity=0.157  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--
Q 014213           43 GMSQELKEEGNKLFQK-RDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL--  117 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~-gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~--  117 (429)
                      ..|..+.+.|..|... |+++.|+..|.+|+++...+..  ....++.+.|.++.++  ++|++|+..|+++....-.  
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l--~~y~~A~~~~e~~~~~~l~~~  189 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL--GRYEEAIEIYEEVAKKCLENN  189 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHTCCCHC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHhhccc
Confidence            4566788889988888 9999999999999998654332  3466888999999999  9999999999999875321  


Q ss_pred             ----CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHh
Q 014213          118 ----YS-KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI--MAAEIAERVKKELEK  168 (429)
Q Consensus       118 ----~~-kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~--~a~~~La~l~~~l~e  168 (429)
                          .. ..+++.+.|+..+|++-.|...|++....+|...  .=...+..+......
T Consensus       190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~  247 (282)
T PF14938_consen  190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE  247 (282)
T ss_dssp             TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence                12 3467888999999999999999999999999543  223455666666654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.69  E-value=0.0023  Score=62.27  Aligned_cols=122  Identities=16%  Similarity=0.141  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-------------C---HHHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-------------E---YPRAIHECNLA  111 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-------------~---y~eAi~~~~~A  111 (429)
                      ....|..+|+.++|.+|+..|++.+++.|+++ ....+++.+|.|++.+..+             +   ..+|+..++..
T Consensus        72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l  150 (243)
T PRK10866         72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL  150 (243)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999887 4667888899997666211             1   35788999999


Q ss_pred             HHhCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHhhc
Q 014213          112 LEVTPLYSK---A--------------LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM---AAEIAERVKKELEKRG  170 (429)
Q Consensus       112 LeldP~~~k---A--------------l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~---a~~~La~l~~~l~e~~  170 (429)
                      ++.-|+..-   |              -+..|.-|...|.|..|+.-++.++.--|+.+.   ++..+...+..++...
T Consensus       151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~  229 (243)
T PRK10866        151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNA  229 (243)
T ss_pred             HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChH
Confidence            999997533   2              244577799999999999999999999988765   4455555555554433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=9.8e-05  Score=48.73  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      .+|+.+|.+|..+|++++|+.+|++++.++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            466777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.68  E-value=0.00011  Score=81.92  Aligned_cols=116  Identities=14%  Similarity=0.139  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..|..+|-.|...+++.+|+..|+.|++.+|++..    +|..+|.+|..-  |.|..|+..|++|..++|.+.-+-|..
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n----~W~gLGeAY~~s--Gry~~AlKvF~kAs~LrP~s~y~~fk~  636 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN----LWLGLGEAYPES--GRYSHALKVFTKASLLRPLSKYGRFKE  636 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCchhHH----HHHHHHHHHHhc--CceehHHHhhhhhHhcCcHhHHHHHHH
Confidence            44667899999999999999999999999999986    999999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      |.....+|+|.+|+..+.+.+.--.....+...++.+..++.
T Consensus       637 A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a  678 (1238)
T KOG1127|consen  637 AVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA  678 (1238)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            999999999999999999999877777777777777766653

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.68  E-value=0.00019  Score=77.43  Aligned_cols=149  Identities=18%  Similarity=0.033  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      |..-++...-.++.++|+.++++||+..|..+.    +|..+|..+.++  ++.+.|...|...+...|..+..|+.++.
T Consensus       654 ~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K----l~lmlGQi~e~~--~~ie~aR~aY~~G~k~cP~~ipLWllLak  727 (913)
T KOG0495|consen  654 WMKSANLERYLDNVEEALRLLEEALKSFPDFHK----LWLMLGQIEEQM--ENIEMAREAYLQGTKKCPNSIPLWLLLAK  727 (913)
T ss_pred             hHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH----HHHHHhHHHHHH--HHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence            333444445556667777777777777776663    677777777777  77777777777777777777777777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhhh--hhhhccc
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVK--EKTKKKK  205 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~k--~~~~~k~  205 (429)
                      .-...|..-.|...++++.--+|.|...|...-+...+.+....+-...+..|.   --|..+..|+.-+.  .++++|-
T Consensus       728 leEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ---ecp~sg~LWaEaI~le~~~~rkT  804 (913)
T KOG0495|consen  728 LEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ---ECPSSGLLWAEAIWLEPRPQRKT  804 (913)
T ss_pred             HHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccchhHHHHHHhccCcccch
Confidence            777777777777777777777777766665555555555555544444445554   34556666663322  4455444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.67  E-value=7.8e-05  Score=49.59  Aligned_cols=33  Identities=27%  Similarity=0.408  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY  118 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~  118 (429)
                      .+|+++|.+|+.+  ++|++|+..|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQL--GDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHh--CCchHHHHHHHHHHHHCcCC
Confidence            4678888888888  88888888888888888863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.64  E-value=6.3e-05  Score=50.95  Aligned_cols=32  Identities=22%  Similarity=0.215  Sum_probs=26.4

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014213          108 CNLALEVTPLYSKALLKRARCYEALNRLDLAF  139 (429)
Q Consensus       108 ~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl  139 (429)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            67788888888888888888888888888875

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.64  E-value=5.9e-05  Score=76.07  Aligned_cols=93  Identities=18%  Similarity=0.205  Sum_probs=78.4

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213           87 SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus        87 ~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      --+|.-|++.  |.|++||.+|.+++.++|-++-.+.+||.+|..+.+|..|..+|..|+.|+-.-.-++...+.++..|
T Consensus       101 KE~GN~yFKQ--gKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  101 KERGNTYFKQ--GKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHhhhhhhhc--cchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            4578899999  99999999999999999999999999999999999999999999999999877777777777777777


Q ss_pred             Hhhccccc--cccccCC
Q 014213          167 EKRGLRVN--DTVIELP  181 (429)
Q Consensus       167 ~e~~~a~~--e~~~~L~  181 (429)
                      +.-..+-.  +....|+
T Consensus       179 g~~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALE  195 (536)
T ss_pred             hhHHHHHHhHHHHHhhC
Confidence            65444444  3344454

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=7.4e-05  Score=72.13  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=70.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213           99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ..|..||..|.+||-++|..+..|.++|.||..+.+|+....++++|+.++||...+...++...........++.
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~   99 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK   99 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999999998888776666555

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.55  E-value=0.00026  Score=70.79  Aligned_cols=93  Identities=19%  Similarity=0.264  Sum_probs=61.6

Q ss_pred             CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHH
Q 014213           60 DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRL-DLA  138 (429)
Q Consensus        60 dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~-deA  138 (429)
                      .+.+|...|++.....+.++    .+++.+|.|++.+  |+|++|...+..|+..+|.++.++.++..|...+|+. +.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~----~~lng~A~~~l~~--~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTP----KLLNGLAVCHLQL--GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SH----HHHHHHHHHHHHC--T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             hHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHh--CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence            47777777777555444443    3667777777777  7777777777777777777777777777777777777 445


Q ss_pred             HHHHHHHHHhCCCCHHHHHH
Q 014213          139 FRDVTTVLNKEPKNIMAAEI  158 (429)
Q Consensus       139 l~~~~kAL~l~P~n~~a~~~  158 (429)
                      -+++......+|+++.....
T Consensus       256 ~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  256 ERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHHHHHCHHHTTTSHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHH
Confidence            56666666677777655443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=97.54  E-value=0.00031  Score=64.42  Aligned_cols=88  Identities=6%  Similarity=-0.109  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213           86 RSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus        86 ~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      .+..|.-+++.  |+|++|...|+.....+|-+++.++.+|-|+..+++|+.|+..|-.|..++++++......+.++-.
T Consensus        40 iY~~Ay~~y~~--Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         40 LYAHAYEFYNQ--GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            34567777888  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccc
Q 014213          166 LEKRGLRVND  175 (429)
Q Consensus       166 l~e~~~a~~e  175 (429)
                      +++...|..-
T Consensus       118 l~~~~~A~~~  127 (165)
T PRK15331        118 MRKAAKARQC  127 (165)
T ss_pred             hCCHHHHHHH
Confidence            9988777663

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.53  E-value=0.00051  Score=51.44  Aligned_cols=50  Identities=24%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                      ..+|.+|.+++.+|+|+.|+.+++.+|+++|+|..+......+...+...
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~kd   51 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQKD   51 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhcc
Confidence            35789999999999999999999999999999999999999988877553

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.52  E-value=0.00024  Score=50.46  Aligned_cols=41  Identities=20%  Similarity=0.120  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      ++..+|.+|..+  |++++|+..|+++++.+|+++.+++.+|.
T Consensus         3 ~~~~la~~~~~~--G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    3 AWLALARAYRRL--GQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            678899999999  99999999999999999999999998875

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.52  E-value=0.00081  Score=68.35  Aligned_cols=113  Identities=21%  Similarity=0.201  Sum_probs=80.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc---H-------------------------------------------HH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHID---V-------------------------------------------SY   84 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~---~-------------------------------------------a~   84 (429)
                      .|.-+|..|+|++|+..|.-+...+..+.+.   +                                           .+
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~  142 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT  142 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence            4778899999999999999888754333320   0                                           11


Q ss_pred             HH-----------HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213           85 LR-----------SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus        85 l~-----------~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                      ++           +.-+.-||++   +|++||+.|.+.|.-+|.+...-..+|.||+.+.-|+-+-+.+.-.|..-|+.+
T Consensus       143 fh~~LqD~~EdqLSLAsvhYmR~---HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSt  219 (557)
T KOG3785|consen  143 FHSSLQDTLEDQLSLASVHYMRM---HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDST  219 (557)
T ss_pred             HHHHHhhhHHHHHhHHHHHHHHH---HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcH
Confidence            11           1122335554   778888888888888888777777788888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHH
Q 014213          154 MAAEIAERVKKEL  166 (429)
Q Consensus       154 ~a~~~La~l~~~l  166 (429)
                      .+....+-...++
T Consensus       220 iA~NLkacn~fRl  232 (557)
T KOG3785|consen  220 IAKNLKACNLFRL  232 (557)
T ss_pred             HHHHHHHHHHhhh
Confidence            8777777655555

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.51  E-value=0.00054  Score=60.92  Aligned_cols=86  Identities=15%  Similarity=0.070  Sum_probs=69.7

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHH
Q 014213           87 SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI----MAAEIAERV  162 (429)
Q Consensus        87 ~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~----~a~~~La~l  162 (429)
                      -.-|.+...-  |+.+.|++-|.++|.+.|..+.+|.+||++|...|+.++|+.++++|+++..+..    .++...+.+
T Consensus        47 El~~valaE~--g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l  124 (175)
T KOG4555|consen   47 ELKAIALAEA--GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL  124 (175)
T ss_pred             HHHHHHHHhc--cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            3345566666  9999999999999999999999999999999999999999999999999965432    355566677


Q ss_pred             HHHHHhhccccc
Q 014213          163 KKELEKRGLRVN  174 (429)
Q Consensus       163 ~~~l~e~~~a~~  174 (429)
                      +..++....+..
T Consensus       125 yRl~g~dd~AR~  136 (175)
T KOG4555|consen  125 YRLLGNDDAARA  136 (175)
T ss_pred             HHHhCchHHHHH
Confidence            777765444433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.48  E-value=0.0049  Score=53.07  Aligned_cols=117  Identities=26%  Similarity=0.250  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHhCC---CCHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA-CYMQMGLSEYPRAIHECNLALEVTP---LYSK  120 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~-~y~kl~~g~y~eAi~~~~~ALeldP---~~~k  120 (429)
                      ...+...|..+...+++..|+..+..++...+.+..    .....+. +|..+  +++..|+..+.+++..+|   ....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~  168 (291)
T COG0457          95 AEALLNLGLLLEALGKYEEALELLEKALALDPDPDL----AEALLALGALYEL--GDYEEALELYEKALELDPELNELAE  168 (291)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCccchHH
Confidence            344666777777777777888888887777666532    3333444 67777  788888888888877666   3566


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPK-NIMAAEIAERVKKELE  167 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~-n~~a~~~La~l~~~l~  167 (429)
                      .++.++..+...++++.|+..+.+++...|. ...+...+..++...+
T Consensus       169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            6666677777777888888888888888777 5666666666666555

>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein

Probab=97.45  E-value=0.0014  Score=52.85  Aligned_cols=66  Identities=21%  Similarity=0.294  Sum_probs=55.4

Q ss_pred             EEEEccCCccHHHHHHHHHhhCCCC-CceEEEEECCCC--CEEEecChHHHHHHHHhhccCCcEEEEEEe
Q 014213          273 RVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRDEEG--DLVTITTDEELRWAEASAEMQGSVRLFVVG  339 (429)
Q Consensus       273 R~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~Dedg--Dliti~~~~dl~~a~~~~~~~~~~rl~v~e  339 (429)
                      .-+.+|...+|.+|++.|.+||+.. ...++-|+++++  .||.|+-+++++-|-+.+. .|.+.||+++
T Consensus         9 Vai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~~~~~v~l~~e~~me~aW~~v~-~~~ltLwcq~   77 (78)
T cd06411           9 VALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGEDGHWVPISGEESLQRAWQDVA-DGPRGLQLQC   77 (78)
T ss_pred             EEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCCCccEeecCcchHHHHHHHhcc-CCceEEEEec
Confidence            3455899999999999999999644 448999998877  5888888999999999854 7889999975

p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.43  E-value=0.0011  Score=71.61  Aligned_cols=115  Identities=14%  Similarity=0.108  Sum_probs=90.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCccH-----------------------------HHHHHHHHHHHHHcCCCCHH
Q 014213           52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDV-----------------------------SYLRSNMAACYMQMGLSEYP  102 (429)
Q Consensus        52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~-----------------------------a~l~~nrA~~y~kl~~g~y~  102 (429)
                      +..++..||...|...+..|++.+|++.+-+                             ..+|..-+...--+  ++.+
T Consensus       591 ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~l--d~~e  668 (913)
T KOG0495|consen  591 AKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYL--DNVE  668 (913)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHh--hhHH
Confidence            4466677777777777777777777654310                             12344444444445  8899


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          103 RAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       103 eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      +|+..|+++|+.-|++.+.|+.+|+++..+++.+.|...|...++.-|+....|..++.+....+.
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~  734 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ  734 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999999999999999998877754

>PRK10941 hypothetical protein; Provisional

Probab=97.43  E-value=0.0015  Score=64.65  Aligned_cols=81  Identities=16%  Similarity=0.276  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus        82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      +...+.|+-.+|++.  ++|+.|+.++++.+.++|+++.-+.-||.+|.++|.+..|+.+++..+...|+++.+......
T Consensus       180 l~Rml~nLK~~~~~~--~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        180 IRKLLDTLKAALMEE--KQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            456788999999999  999999999999999999999999999999999999999999999999999999987766665


Q ss_pred             HHH
Q 014213          162 VKK  164 (429)
Q Consensus       162 l~~  164 (429)
                      +..
T Consensus       258 l~~  260 (269)
T PRK10941        258 IHS  260 (269)
T ss_pred             HHH
Confidence            543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.37  E-value=0.00046  Score=71.22  Aligned_cols=123  Identities=15%  Similarity=0.120  Sum_probs=90.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----CCCCHH--H
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV----TPLYSK--A  121 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel----dP~~~k--A  121 (429)
                      +.||.||-.|+|++|+..-+.-|++......  ..-.+|+|+|.||.-+  |+|+.|++.|.+++.+    .-.-..  .
T Consensus       200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl--g~fe~A~ehYK~tl~LAielg~r~vEAQs  277 (639)
T KOG1130|consen  200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL--GNFELAIEHYKLTLNLAIELGNRTVEAQS  277 (639)
T ss_pred             ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh--cccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence            5689999999999999998888887654332  1235889999999999  9999999999876543    333333  4


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHhhccccc
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEP------KNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P------~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      -|.+|..|.-+.++..|+.++.+-|.+.-      ....+.+.++..+.++++...++.
T Consensus       278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~  336 (639)
T KOG1130|consen  278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY  336 (639)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence            57788888888888888888888776632      234566667777777766555543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.34  E-value=0.00053  Score=45.13  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY  118 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~  118 (429)
                      +++.+|.+|+.+  |+|++|+..|+++++++|++
T Consensus         3 ~~~~lg~~~~~~--~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    3 AWYYLGQAYYQL--GNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHT--T-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHh--CCHHHHHHHHHHHHHHCcCC
Confidence            556666666666  66666666666666666653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.33  E-value=0.0049  Score=57.96  Aligned_cols=116  Identities=16%  Similarity=0.125  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLL-PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--SKA  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~-P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--~kA  121 (429)
                      .+.....|+.+...|+|.+|...|++++.-. ..++    .++..++.+.+.+  +++..|...++...+.+|..  +..
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~--~~~A~a~~tLe~l~e~~pa~r~pd~  162 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAI--QEFAAAQQTLEDLMEYNPAFRSPDG  162 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhh--ccHHHHHHHHHHHhhcCCccCCCCc
Confidence            3445678999999999999999999998743 2333    4778899999999  99999999999999999874  667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      .+.+|.+|..+|++..|...|+-+++..|+- .+..........++
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qg  207 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQG  207 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhc
Confidence            8888999999999999999999999998864 44444444444444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.32  E-value=0.0009  Score=66.18  Aligned_cols=130  Identities=17%  Similarity=0.143  Sum_probs=95.2

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CC
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PL  117 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~  117 (429)
                      ...+..+...|+.|-..++|.+|..+|.+|.++.-.  +....+..|.+.+.||.+   .++.+|+..+++|+++-  -.
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~---~~~~~Ai~~~~~A~~~y~~~G  108 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK---GDPDEAIECYEKAIEIYREAG  108 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHhcC
Confidence            356677888899999999999999999999887643  333456788888888877   49999999999999873  11


Q ss_pred             ----CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHHhhccccc
Q 014213          118 ----YSKALLKRARCYEAL-NRLDLAFRDVTTVLNKEP--KN----IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       118 ----~~kAl~~rA~ay~~L-G~~deAl~~~~kAL~l~P--~n----~~a~~~La~l~~~l~e~~~a~~  174 (429)
                          -.+++.++|.+|... |+++.|+..|++|+.+--  +.    ..++..++.++..+++...++.
T Consensus       109 ~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~  176 (282)
T PF14938_consen  109 RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIE  176 (282)
T ss_dssp             -HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHH
Confidence                256799999999998 999999999999998722  11    2344555566666665555544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.30  E-value=0.00048  Score=65.99  Aligned_cols=107  Identities=14%  Similarity=0.059  Sum_probs=86.7

Q ss_pred             HHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213           68 YEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN  147 (429)
Q Consensus        68 Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~  147 (429)
                      ..+.|....-..+.++.+++-||..|-.+  |-+.-|.-+++++|.+.|+-+.++..+|.-+...|+|+.|.+.|+-+++
T Consensus        50 lsqlL~~~~l~~eeRA~l~fERGvlYDSl--GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E  127 (297)
T COG4785          50 MSQILASRALTDEERAQLLFERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE  127 (297)
T ss_pred             HHHHHHhccCChHHHHHHHHHhcchhhhh--hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc
Confidence            34444433334446788999999999999  9999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHhhccccccc
Q 014213          148 KEPKNIMAAEIAERVKKELEKRGLRVNDT  176 (429)
Q Consensus       148 l~P~n~~a~~~La~l~~~l~e~~~a~~e~  176 (429)
                      ++|...-+..+.+....--++...+..+.
T Consensus       128 LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~  156 (297)
T COG4785         128 LDPTYNYAHLNRGIALYYGGRYKLAQDDL  156 (297)
T ss_pred             cCCcchHHHhccceeeeecCchHhhHHHH
Confidence            99998877776665444444555555543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.24  E-value=0.00025  Score=48.04  Aligned_cols=34  Identities=35%  Similarity=0.557  Sum_probs=31.2

Q ss_pred             HHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHH
Q 014213           67 KYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH  106 (429)
Q Consensus        67 ~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~  106 (429)
                      +|++||+++|+++.    +|+|+|.+|...  |++++|++
T Consensus         1 ~y~kAie~~P~n~~----a~~nla~~~~~~--g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAE----AYNNLANLYLNQ--GDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHH----HHHHHHHHHHHC--cCHHhhcC
Confidence            48999999999996    999999999999  99999873

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.21  E-value=0.0096  Score=51.24  Aligned_cols=108  Identities=25%  Similarity=0.262  Sum_probs=88.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Q 014213           54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL-YSKALLKRARCYEAL  132 (429)
Q Consensus        54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~-~~kAl~~rA~ay~~L  132 (429)
                      .++..|+++.|+..|.+++...|... .....+..++..+...  +++..|+..+.+++...+. ...++..++.++...
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELN-ELAEALLALGALLEAL--GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCcc-chHHHHHHhhhHHHHh--cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence            88999999999999999998777301 1123555566667777  8999999999999999999 799999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          133 NRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       133 G~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      +.++.|+..+..++...|........+.....
T Consensus       216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         216 GKYEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            99999999999999999986666666666555

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.16  E-value=0.00071  Score=44.71  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      ++|+.+|.+|..+|++++|+.+|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            467777777777777777777777777777743

...

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=0.002  Score=65.59  Aligned_cols=106  Identities=19%  Similarity=0.251  Sum_probs=82.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 014213           53 NKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEAL  132 (429)
Q Consensus        53 n~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~L  132 (429)
                      ..+..++||..|+..++-.+.++....   ..+-.-+|.||+.+  |+|++|+..|+.+.+-+-.+.+.+.++|.|+.-+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE---~~~~lWia~C~fhL--gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL  104 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEE---DSLQLWIAHCYFHL--GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL  104 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhh---HHHHHHHHHHHHhh--ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH
Confidence            356678999999999998886654333   13444569999999  9999999999999998877899999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          133 NRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       133 G~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      |.|.+|.....+|    |.++-....+-.+-..++
T Consensus       105 g~Y~eA~~~~~ka----~k~pL~~RLlfhlahkln  135 (557)
T KOG3785|consen  105 GQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLN  135 (557)
T ss_pred             HHHHHHHHHHhhC----CCChHHHHHHHHHHHHhC
Confidence            9999998766554    556655555555444443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.14  E-value=0.0025  Score=65.91  Aligned_cols=125  Identities=17%  Similarity=0.109  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC------CCH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLP--RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP------LYS  119 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P--~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP------~~~  119 (429)
                      +-+.||.+.-.|+|+.|++.|..++.+.-  .+...-+...+.+|..|.-+  .+|+.||.+..+-|.+..      --.
T Consensus       238 ~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll--~e~~kAI~Yh~rHLaIAqeL~DriGe~  315 (639)
T KOG1130|consen  238 HSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL--KEVQKAITYHQRHLAIAQELEDRIGEL  315 (639)
T ss_pred             hcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            45789999999999999999998877653  22222344556699999999  999999999998776542      357


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC-CHHHHHHHHHHHHHHHhhccccc
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNK-----EPK-NIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l-----~P~-n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ++++.+|.+|-.+|..+.|+.+.+..+.+     +|. ...++.++..+...++.....+.
T Consensus       316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~  376 (639)
T KOG1130|consen  316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVD  376 (639)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCC
Confidence            89999999999999999999999988876     333 44577788888887877665554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.09  E-value=0.014  Score=60.59  Aligned_cols=98  Identities=18%  Similarity=0.389  Sum_probs=78.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------C--ccH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213           49 KEEGNKLFQKRDHGGALLKYEKALKLLPRN--------H--IDV----SYLRSNMAACYMQMGLSEYPRAIHECNLALEV  114 (429)
Q Consensus        49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~--------~--~~~----a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel  114 (429)
                      ...|..+|++++|..|+..|..||++....        +  .++    +.+-..+..||++|  ++.+-|+....+.|-+
T Consensus       180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~--rkpdlALnh~hrsI~l  257 (569)
T PF15015_consen  180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRM--RKPDLALNHSHRSINL  257 (569)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhc--CCCchHHHHHhhhhhc
Confidence            346667777777877777777777776431        1  122    34567789999999  9999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          115 TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       115 dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      +|.+..-+++.|.|+..|.+|.+|-+.+.-|.-+
T Consensus       258 nP~~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  258 NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998887665543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.04  E-value=0.011  Score=63.68  Aligned_cols=98  Identities=16%  Similarity=0.011  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+.-.+.-|-..|+|++|+.+.++||+..|...+    +|...|.+|-.+  |++.+|...++.|-.+|+.+--.-..-
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e----ly~~KarilKh~--G~~~~Aa~~~~~Ar~LD~~DRyiNsK~  268 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE----LYMTKARILKHA--GDLKEAAEAMDEARELDLADRYINSKC  268 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHhCChhhHHHHHHH
Confidence            45667788888889999999999999999998876    888899999998  999999999999999998877777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKE  149 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~  149 (429)
                      +..+...|+.++|...+.....-+
T Consensus       269 aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  269 AKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhcCCC
Confidence            888888899999988887766544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.02  E-value=0.0045  Score=55.62  Aligned_cols=71  Identities=17%  Similarity=0.252  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE---------------YPRAIHECNLAL  112 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~---------------y~eAi~~~~~AL  112 (429)
                      ...+|..||+.++|++|+..|++-|++.|.++ ....+++.+|.+++.+  ..               ...|+.+|...+
T Consensus        50 qL~l~yayy~~~~y~~A~a~~~rFirLhP~hp-~vdYa~Y~~gL~~~~~--~~~~~~~~~~~drD~~~~~~A~~~f~~lv  126 (142)
T PF13512_consen   50 QLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP-NVDYAYYMRGLSYYEQ--DEGSLQSFFRSDRDPTPARQAFRDFEQLV  126 (142)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC-CccHHHHHHHHHHHHH--hhhHHhhhcccccCcHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999877 4667888899999998  55               889999999999


Q ss_pred             HhCCCCHHH
Q 014213          113 EVTPLYSKA  121 (429)
Q Consensus       113 eldP~~~kA  121 (429)
                      ..-|+..-|
T Consensus       127 ~~yP~S~ya  135 (142)
T PF13512_consen  127 RRYPNSEYA  135 (142)
T ss_pred             HHCcCChhH
Confidence            999987543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.0042  Score=66.61  Aligned_cols=104  Identities=17%  Similarity=0.183  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH-----------------------------HHHHHHHHHHHHHc
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV-----------------------------SYLRSNMAACYMQM   96 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~-----------------------------a~l~~nrA~~y~kl   96 (429)
                      ..++..-|.+.+.++|++|+....+.|...|++...+                             .+..+-.|.|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            3466667777788888888888888888777654321                             12335678888888


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213           97 GLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus        97 ~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                        +..++|+..++   .+++...+++..+|++++.+|+|++|+..|+..++-+-++.+
T Consensus        93 --nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   93 --NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             --ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence              88888888887   567777788888888888999999999888888876555443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.98  E-value=0.0053  Score=65.35  Aligned_cols=98  Identities=21%  Similarity=0.112  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH--HH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL--KR  125 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~--~r  125 (429)
                      +..+|..+...|+.++|+..|++|+.....-..-...+++.++.||+-+  .+|++|...+.+.++.+ +|.+++|  -.
T Consensus       270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~--~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~  346 (468)
T PF10300_consen  270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQ--HDWEEAAEYFLRLLKES-KWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHH--chHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence            5677888888999999999999888533322222245788899999988  89999998888888744 5667654  44


Q ss_pred             HHHHHHcCCH-------HHHHHHHHHHHHh
Q 014213          126 ARCYEALNRL-------DLAFRDVTTVLNK  148 (429)
Q Consensus       126 A~ay~~LG~~-------deAl~~~~kAL~l  148 (429)
                      |.||..+++.       ++|...|.++-.+
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            7888888888       5555555554443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.017  Score=57.68  Aligned_cols=115  Identities=19%  Similarity=0.211  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH----------------
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL----------------  110 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~----------------  110 (429)
                      ....++..++..|++.+|...|..++...|.+..    +...++.||..+  |+++.|...+..                
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~----~~~~la~~~l~~--g~~e~A~~iL~~lP~~~~~~~~~~l~a~  209 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSE----AKLLLAECLLAA--GDVEAAQAILAALPLQAQDKAAHGLQAQ  209 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccch----HHHHHHHHHHHc--CChHHHHHHHHhCcccchhhHHHHHHHH
Confidence            3566788999999999999999999999999975    777899999999  888766554443                


Q ss_pred             ------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHH
Q 014213          111 ------------------ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP--KNIMAAEIAERVKKELE  167 (429)
Q Consensus       111 ------------------ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P--~n~~a~~~La~l~~~l~  167 (429)
                                        .+..+|++..+-+.+|..|...|++++|++.+-..+..+-  .+..++..+-.+...++
T Consensus       210 i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         210 IELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence                              1234789999999999999999999999999888887754  34567777777666654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.75  E-value=0.039  Score=56.85  Aligned_cols=123  Identities=17%  Similarity=0.016  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-CHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL-YSKA  121 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~-~~kA  121 (429)
                      .+|...-++|..-+..|+|..|.....++-+..+..    ...|.--|.+--++  |+++.|-.+..+|-+..++ ....
T Consensus        82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p----~l~~l~aA~AA~qr--gd~~~an~yL~eaae~~~~~~l~v  155 (400)
T COG3071          82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP----VLAYLLAAEAAQQR--GDEDRANRYLAEAAELAGDDTLAV  155 (400)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch----HHHHHHHHHHHHhc--ccHHHHHHHHHHHhccCCCchHHH
Confidence            567778889999999999999999988866554432    24555555566667  9999999999999999544 4677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL  171 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~  171 (429)
                      +..++..+...|+++.|...+..++.+.|.++.++....+++-.++....
T Consensus       156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~  205 (400)
T COG3071         156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQA  205 (400)
T ss_pred             HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHH
Confidence            89999999999999999999999999999999999999999988876543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0082  Score=60.67  Aligned_cols=113  Identities=16%  Similarity=0.115  Sum_probs=87.3

Q ss_pred             HcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 014213           57 QKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL----YSKALLKRARCYE  130 (429)
Q Consensus        57 ~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~----~~kAl~~rA~ay~  130 (429)
                      ..|++..-...+ ++|..+|.  .+...|--|---|.-|++-  .+|..|+..|+.+|.....    +.-.|.+||-|..
T Consensus        54 ~~gd~~~~~~~L-qslK~da~E~ep~E~Aen~KeeGN~~fK~--Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~  130 (390)
T KOG0551|consen   54 SEGDPNPDNVCL-QSLKADAEEGEPHEQAENYKEEGNEYFKE--KRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL  130 (390)
T ss_pred             CCCCCCccHHHH-HHhhhccccCChHHHHHHHHHHhHHHHHh--hhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH
Confidence            345554444433 44555543  2324566677789999998  9999999999999988644    3557999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccc
Q 014213          131 ALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       131 ~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a  172 (429)
                      .+|+|..|+.++.+|+.++|.+.-++..-+.+.-.|..-..+
T Consensus       131 ~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a  172 (390)
T KOG0551|consen  131 YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEA  172 (390)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHH
Confidence            999999999999999999999998888888887777664433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.74  E-value=0.0029  Score=67.75  Aligned_cols=110  Identities=17%  Similarity=0.090  Sum_probs=95.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY  129 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay  129 (429)
                      +.|.-.-..|+...|+.++..|+.+.|....   .-..|+|...++-  +-.-.|-..+.++|.++...+-.+|-+|.+|
T Consensus       612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~---v~~v~la~~~~~~--~~~~da~~~l~q~l~~~~sepl~~~~~g~~~  686 (886)
T KOG4507|consen  612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQD---VPLVNLANLLIHY--GLHLDATKLLLQALAINSSEPLTFLSLGNAY  686 (886)
T ss_pred             cccceeeecCCcHHHHHHHHHHhccChhhhc---ccHHHHHHHHHHh--hhhccHHHHHHHHHhhcccCchHHHhcchhH
Confidence            3344444689999999999999999997553   4568899999888  8889999999999999988888999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      ..+.+.+.|++.|+.|+.++|+++...+.+..+..
T Consensus       687 l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  687 LALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999888877655

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.72  E-value=0.032  Score=63.24  Aligned_cols=124  Identities=15%  Similarity=0.018  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------CHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL------YSK  120 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~------~~k  120 (429)
                      ....|..++..|+|++|...+.+++...+.... ....+++++|.++..+  |++++|+..+.+++.+...      ...
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~--G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK--GELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            445788899999999999999999997665432 1345678899999988  9999999999999976432      134


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHhhcccc
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPK--------NIMAAEIAERVKKELEKRGLRV  173 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~--------n~~a~~~La~l~~~l~e~~~a~  173 (429)
                      ++..+|.++...|++++|...+++++.+...        .......++.+....++...+.
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~  593 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAE  593 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            6788899999999999999999999986221        1223344555555555554443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.69  E-value=0.025  Score=64.04  Aligned_cols=125  Identities=11%  Similarity=0.003  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL------  117 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~------  117 (429)
                      ..+...|..++..|++++|...|.+++........  ....++.++|.+++..  |++++|...+.+++.+...      
T Consensus       492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~--G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ--GFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhccccc
Confidence            34567888899999999999999999987654322  2345678899999998  9999999999999986321      


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhhccc
Q 014213          118 --YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK-----NIMAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       118 --~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~-----n~~a~~~La~l~~~l~e~~~a  172 (429)
                        ....+..+|.++...|++++|...+.+++.+...     ...++..++.+....++...+
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  631 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNA  631 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHH
Confidence              2334667899999999999999999999886332     123344455555555544433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.69  E-value=0.013  Score=57.69  Aligned_cols=87  Identities=15%  Similarity=-0.004  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 014213           86 RSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAAEIA  159 (429)
Q Consensus        86 ~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n---~~a~~~L  159 (429)
                      .++.|.-+++.  |+|..|...|..-+..-|+.   +.|+|-+|.+++.+|+|++|...|..+++-.|.+   ++++.-+
T Consensus       144 ~Y~~A~~~~ks--gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYKS--GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            67889999999  99999999999999998875   6799999999999999999999999999998865   5778888


Q ss_pred             HHHHHHHHhhccccc
Q 014213          160 ERVKKELEKRGLRVN  174 (429)
Q Consensus       160 a~l~~~l~e~~~a~~  174 (429)
                      +.+...+++...|-.
T Consensus       222 g~~~~~l~~~d~A~a  236 (262)
T COG1729         222 GVSLGRLGNTDEACA  236 (262)
T ss_pred             HHHHHHhcCHHHHHH
Confidence            888888877666544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.63  E-value=0.0051  Score=62.85  Aligned_cols=131  Identities=16%  Similarity=0.110  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-------
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY-------  118 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~-------  118 (429)
                      +...|+.+...+.|+.+++.|+.|+++.-++...  --.++..++..|.++  .+|++|+-...+|+++.-.+       
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l--~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL--KDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH--HhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            4458999999999999999999999987654431  134678899999999  99999999999999875321       


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHHhhccccccccccC
Q 014213          119 ---SKALLKRARCYEALNRLDLAFRDVTTVLNKE--PKN----IMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       119 ---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~--P~n----~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                         .-++|+++.+|..+|++..|.+++++|.++.  -.|    .....-++.++...++...++..+....
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence               2368999999999999999999999998763  233    3455667778877777666666554443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.03  Score=60.21  Aligned_cols=107  Identities=17%  Similarity=0.111  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------------------CccHHHHHHHHHHHHHHcCCC
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRN---------------------------HIDVSYLRSNMAACYMQMGLS   99 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~---------------------------~~~~a~l~~nrA~~y~kl~~g   99 (429)
                      .+-.+|..+|+.++|++|+..|+..++-+..+                           +++....++|.|-.+...  |
T Consensus       112 ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~--g  189 (652)
T KOG2376|consen  112 LLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIEN--G  189 (652)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhc--c
Confidence            35568999999999999999999986654322                           222245778898888888  9


Q ss_pred             CHHHHHHHHHHHHHhC-------CCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014213          100 EYPRAIHECNLALEVT-------PLY---S-----KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA  155 (429)
Q Consensus       100 ~y~eAi~~~~~ALeld-------P~~---~-----kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a  155 (429)
                      +|.+|++.+..|+.+.       -.+   +     .....++.+|..+|+..+|...|...++.+|.+...
T Consensus       190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~  260 (652)
T KOG2376|consen  190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPS  260 (652)
T ss_pred             cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchH
Confidence            9999999999995442       111   1     245677899999999999999999999988766543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.60  E-value=0.0039  Score=41.07  Aligned_cols=31  Identities=29%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPL  117 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~  117 (429)
                      +|..+|.+|..+  |++++|+..++++++++|+
T Consensus         3 ~~~~lg~~y~~~--~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQL--GDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHT--TSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC
Confidence            566667777776  7777777777777776664

...

>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]

Probab=96.57  E-value=0.0027  Score=62.13  Aligned_cols=81  Identities=28%  Similarity=0.379  Sum_probs=69.4

Q ss_pred             CCCceeEEEEeCCceEEEEccCC--ccHHHHHHHHHhhCCC-CCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEE
Q 014213          258 NEPKKTVKLVFGEDIRVAQLPLN--SSLLQLREVISDRFPS-CRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVR  334 (429)
Q Consensus       258 ~~~~~~vK~~~~~DiR~~~i~~~--~~~~~L~~~v~~kf~~-~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~r  334 (429)
                      ..-++.||--|+.+-|+|.+|.+  .+|.+|...|+..--. .-.|+|-|-|.-|||..|+.||-|.-|++++++  -+|
T Consensus        15 ~~~~veVKSKFdaEfRRfsl~r~~~~~f~~F~~Lv~~~H~i~nvdvllgY~d~hgDLLPinNDDn~~ka~~sa~P--lLR   92 (358)
T KOG3606|consen   15 DSSTVEVKSKFDAEFRRFSLPRHSASSFDEFYSLVEHLHHIPNVDVLLGYADTHGDLLPINNDDNLHKALSSARP--LLR   92 (358)
T ss_pred             CcceEEeeccccchhheecccccCcccHHHHHHHHHHHhcCCCceEEEEEecCCCceecccCchhHHHHhhccCc--hhh
Confidence            35588899999999999999887  5899998888877632 345999999999999999999999999998764  589


Q ss_pred             EEEEee
Q 014213          335 LFVVGV  340 (429)
Q Consensus       335 l~v~e~  340 (429)
                      |+|+.-
T Consensus        93 ~~iQkr   98 (358)
T KOG3606|consen   93 LLIQKR   98 (358)
T ss_pred             hhhhhh
Confidence            998854

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=96.55  E-value=0.016  Score=51.68  Aligned_cols=86  Identities=22%  Similarity=0.239  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           85 LRSNMAACYMQMG-LSEYPRAIHECNLALE-VTPL-YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus        85 l~~nrA~~y~kl~-~g~y~eAi~~~~~ALe-ldP~-~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      ..+|+|.|+.+.. ..+..+.|..++..+. -.|. ....+|.+|..++.+++|+.|+.+++..|..+|+|.++...-..
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~  113 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKET  113 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            5577888877651 1246678888888886 4554 35678999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 014213          162 VKKELEKRG  170 (429)
Q Consensus       162 l~~~l~e~~  170 (429)
                      ++..+...+
T Consensus       114 ied~itkeg  122 (149)
T KOG3364|consen  114 IEDKITKEG  122 (149)
T ss_pred             HHHHHhhcc
Confidence            999886544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.54  E-value=0.018  Score=54.34  Aligned_cols=124  Identities=17%  Similarity=0.134  Sum_probs=102.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE-VTPLYSKALLKRARCY  129 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe-ldP~~~kAl~~rA~ay  129 (429)
                      .+..+-+.=|.+.++....+.+...|...     -++.+|.+...+  |+|.+|...|.+++. +-..+...++.+|.+.
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~~ApTvq-----nr~rLa~al~el--Gr~~EA~~hy~qalsG~fA~d~a~lLglA~Aq  134 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELAIAPTVQ-----NRYRLANALAEL--GRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQ  134 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHhhchhHH-----HHHHHHHHHHHh--hhhhhhHHHHHHHhccccCCCHHHHHHHHHHH
Confidence            34455566778888888888888888765     456789999999  999999999999986 6678899999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhhccccccccccCC
Q 014213          130 EALNRLDLAFRDVTTVLNKEPK--NIMAAEIAERVKKELEKRGLRVNDTVIELP  181 (429)
Q Consensus       130 ~~LG~~deAl~~~~kAL~l~P~--n~~a~~~La~l~~~l~e~~~a~~e~~~~L~  181 (429)
                      ..++++.+|...+++..+.+|.  .+.....+++++..++..+.+-......++
T Consensus       135 fa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         135 FAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             HhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            9999999999999999999985  567788889999988877766554444443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.53  E-value=0.0045  Score=40.22  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      .|+|++|.||..+|++++|+..|++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367888888888888888888888888888864

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.0074  Score=58.89  Aligned_cols=95  Identities=14%  Similarity=0.141  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEV-----------TPL-------YSKALLKRARCYEALNRLDLAFRDVTTV  145 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel-----------dP~-------~~kAl~~rA~ay~~LG~~deAl~~~~kA  145 (429)
                      .++...|.-++++  |+|.+|...|..|+..           +|.       ....|++.++|+...|+|-++++.+...
T Consensus       179 ~~l~q~GN~lfk~--~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei  256 (329)
T KOG0545|consen  179 PVLHQEGNRLFKL--GRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI  256 (329)
T ss_pred             HHHHHhhhhhhhh--ccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence            4566788899999  9999999999998743           222       3347899999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          146 LNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       146 L~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      |..+|.|.-|+...+.+..+.=..+.|..+....|
T Consensus       257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL  291 (329)
T KOG0545|consen  257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVL  291 (329)
T ss_pred             HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            99999999999888888776655555555444444

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.42  E-value=0.0017  Score=68.16  Aligned_cols=86  Identities=16%  Similarity=0.098  Sum_probs=75.7

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213           87 SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus        87 ~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      -+-+.-++.-  .+|+.|+..|.+||+++|+++..+-+|+.++...++|..|+.++.+|++++|...-++...+.+..++
T Consensus         8 k~ean~~l~~--~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l   85 (476)
T KOG0376|consen    8 KNEANEALKD--KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL   85 (476)
T ss_pred             hhHHhhhccc--chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence            3455666666  89999999999999999999999999999999999999999999999999999888888887888888


Q ss_pred             Hhhccccc
Q 014213          167 EKRGLRVN  174 (429)
Q Consensus       167 ~e~~~a~~  174 (429)
                      ++...+..
T Consensus        86 ~~~~~A~~   93 (476)
T KOG0376|consen   86 GEFKKALL   93 (476)
T ss_pred             HHHHHHHH
Confidence            77666655

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.034  Score=54.94  Aligned_cols=116  Identities=19%  Similarity=0.113  Sum_probs=51.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HhCC--CCHHHHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL----EVTP--LYSKALL  123 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL----eldP--~~~kAl~  123 (429)
                      -..+.+...+.|.-.+..|.+.++.+|...+   .+.+.++...|+.  |+.+.|-..++++-    .++-  ...-.+.
T Consensus       182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p---~L~s~Lgr~~MQ~--GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~  256 (366)
T KOG2796|consen  182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEP---QLLSGLGRISMQI--GDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM  256 (366)
T ss_pred             HHHHHHhcchhhhhhHHHHHHHHHhCCcccH---HHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence            3444555555555555555555555533322   2444444444544  55555555444221    1221  1122333


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                      +.+.+|...++|.+|...|.+++..+|.++.+....+-|..-+++..
T Consensus       257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~  303 (366)
T KOG2796|consen  257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLK  303 (366)
T ss_pred             hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHH
Confidence            33444444444445555555555555544444444444444444333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.36  E-value=0.085  Score=52.12  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=67.6

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k  120 (429)
                      +.+.|+.|...+.   ..+.+.+|.-.|++--+..|..+.    +.+..|.|++.+  ++|++|......||.-++.++.
T Consensus       172 LtQLA~awv~la~---ggek~qdAfyifeE~s~k~~~T~~----llnG~Av~~l~~--~~~eeAe~lL~eaL~kd~~dpe  242 (299)
T KOG3081|consen  172 LTQLAQAWVKLAT---GGEKIQDAFYIFEELSEKTPPTPL----LLNGQAVCHLQL--GRYEEAESLLEEALDKDAKDPE  242 (299)
T ss_pred             HHHHHHHHHHHhc---cchhhhhHHHHHHHHhcccCCChH----HHccHHHHHHHh--cCHHHHHHHHHHHHhccCCCHH
Confidence            3455555554433   344567777777776664444442    667777777777  7777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHH
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTT-VLNKEPKNIM  154 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~k-AL~l~P~n~~  154 (429)
                      ++.++-.+-..+|.-.++...+-. ....+|.++-
T Consensus       243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  243 TLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            777777777777766655544433 3344565553

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.32  E-value=0.059  Score=55.56  Aligned_cols=115  Identities=15%  Similarity=0.022  Sum_probs=97.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY  129 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay  129 (429)
                      ..+..+.+.|++++|.....++++..-+..         +...+-+++++++..=+...++.+...|+++..++.+|..|
T Consensus       268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---------L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~  338 (400)
T COG3071         268 AYAERLIRLGDHDEAQEIIEDALKRQWDPR---------LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA  338 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccChh---------HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            456677889999999999999998755322         44555666779999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          130 EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       130 ~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ...+.|.+|-.+|+.|++.-|+ ...+..++.+...+++...+..
T Consensus       339 ~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~  382 (400)
T COG3071         339 LKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ  382 (400)
T ss_pred             HHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence            9999999999999999999875 5677888888888887655544

>smart00028 TPR Tetratricopeptide repeats

Probab=96.30  E-value=0.0062  Score=37.32  Aligned_cols=31  Identities=26%  Similarity=0.343  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      +|+++|.+|..+++++.|+..|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455555555555555555555555555543

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=96.27  E-value=0.031  Score=45.31  Aligned_cols=68  Identities=22%  Similarity=0.309  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV  114 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel  114 (429)
                      .+....++|..+|...+.++|+..+.+||+..++.+ ++..++-.+..+|+.+  |+|.+++....+=+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~--Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEW--GKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999998744 6888888899999999  9999999887665554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.26  E-value=0.016  Score=61.21  Aligned_cols=123  Identities=15%  Similarity=0.052  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCCCCc--c--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-h-----
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKA-LKLLPRNHI--D--VSYLRSNMAACYMQMGLSEYPRAIHECNLALE-V-----  114 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kA-Lel~P~~~~--~--~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe-l-----  114 (429)
                      ..+..+.+.+|-.|+|..|+..+... |...|....  .  .-.+|+|+|-.++++  +.|.-++-.|.+||+ .     
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~--~~y~~~~~~F~kAL~N~c~qL~  318 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQL--GCYQASSVLFLKALRNSCSQLR  318 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeeh--hhHHHHHHHHHHHHHHHHHHHh
Confidence            34567788889999999999876543 333443111  1  123568999999999  999999999999996 1     


Q ss_pred             ---CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          115 ---TP---------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       115 ---dP---------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                         .|         .....+|+.|..|...|+.-+|.++|.+++..--.|+..|..++++...-.+..
T Consensus       319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~  386 (696)
T KOG2471|consen  319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKG  386 (696)
T ss_pred             ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhh
Confidence               12         345679999999999999999999999999999999999999999886554443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.24  E-value=0.023  Score=52.98  Aligned_cols=69  Identities=16%  Similarity=0.122  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          100 EYPRAIHECNLALEVTPLYSKALLKRARCYEALNR----------LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       100 ~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~----------~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      -|+.|...++.+...+|.+..++++=|.++..|.+          +++|+.-|++||.++|+...++..++.++..++.
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            37899999999999999999999999999998855          4678888999999999999999999999988864

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.04  Score=54.46  Aligned_cols=105  Identities=19%  Similarity=0.177  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKA----LKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kA----Lel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      .-....|...++-||-+.|-.+|+..    -.++....  -..++-|.+..|+-.  ++|..|...+++.++.||.++.+
T Consensus       213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~--~~~V~~n~a~i~lg~--nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQG--KIMVLMNSAFLHLGQ--NNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccch--hHHHHhhhhhheecc--cchHHHHHHHhhccccCCCchhh
Confidence            34557899999999999999999843    33333222  135677788888776  99999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                      ..+.|.|+..+|+..+|++..+.++...|....
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence            999999999999999999999999999997543

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.18  E-value=0.1  Score=49.31  Aligned_cols=102  Identities=11%  Similarity=0.010  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK-ALLK  124 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k-Al~~  124 (429)
                      ......+-.++..+++++|+..++.++.. |.+...-+.+-.++|.+.+++  +.+++|+..++..  .++.|.. .--.
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLArvq~q~--~k~D~AL~~L~t~--~~~~w~~~~~el  164 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQ-TKDENLKALAALRLARVQLQQ--KKADAALKTLDTI--KEESWAAIVAEL  164 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHHHHHHh--hhHHHHHHHHhcc--ccccHHHHHHHH
Confidence            34567788999999999999999999975 444444456778889999999  9999999877543  2233322 3567


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      +|.+|...|+-++|...|.+++..+++.
T Consensus       165 rGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         165 RGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            7999999999999999999999998543

>PRK10941 hypothetical protein; Provisional

Probab=96.18  E-value=0.043  Score=54.42  Aligned_cols=78  Identities=18%  Similarity=0.126  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      -+.+.-..|.+.++|+.|+.+.+..+.+.|.++.    -+.-||.+|.++  +.+..|+.+++..++..|+.+.+..-+.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~----e~RDRGll~~qL--~c~~~A~~DL~~fl~~~P~dp~a~~ik~  256 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY----EIRDRGLIYAQL--DCEHVALSDLSYFVEQCPEDPISEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            3556677899999999999999999999999984    778899999999  9999999999999999999998877665


Q ss_pred             HHHH
Q 014213          127 RCYE  130 (429)
Q Consensus       127 ~ay~  130 (429)
                      ++..
T Consensus       257 ql~~  260 (269)
T PRK10941        257 QIHS  260 (269)
T ss_pred             HHHH
Confidence            5543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.17  E-value=0.04  Score=61.13  Aligned_cols=115  Identities=6%  Similarity=-0.087  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +...-..+...|++++|...|+...+..+-.+.  ...|..+..+|.+.  |++++|...+++. ...| +...|..+..
T Consensus       429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~--~~~y~~li~~l~r~--G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~  502 (697)
T PLN03081        429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR--AMHYACMIELLGRE--GLLDEAYAMIRRA-PFKP-TVNMWAALLT  502 (697)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC--ccchHhHHHHHHhc--CCHHHHHHHHHHC-CCCC-CHHHHHHHHH
Confidence            666677788888899999988888764322221  12566677888888  8888888877653 2334 3556888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      ++...|+++.|...+++++.++|++...+..+..++...++
T Consensus       503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~  543 (697)
T PLN03081        503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR  543 (697)
T ss_pred             HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC
Confidence            88888888888888888888888877766666666655543

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.11  E-value=0.042  Score=59.71  Aligned_cols=100  Identities=16%  Similarity=0.210  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      .|++.+..+|+..+|..+++.|...+...|.+..  +.+.+..+++.||+.+  .+.++|.+.+.+|=+.+|..+-.-+.
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L--~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKL--EQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHhhccccHHHHHH
Confidence            3678899999999999999999999999997655  3577889999999999  99999999999999999999988888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      .-.+...-|.-++|+....+....
T Consensus       434 ~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  434 MLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhh
Confidence            888999999999999998877655

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=0.06  Score=54.08  Aligned_cols=103  Identities=16%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213           54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN  133 (429)
Q Consensus        54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG  133 (429)
                      .+.+..+|++|+.+...-.+..|.+..    .++.+|.||+..  .+|..|..+|++.-.+.|...+.-+.-|+.++..+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rA----gLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~   92 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRA----GLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC   92 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchH----HHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence            346778999999999999999998774    788999999999  99999999999999999999998888899999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          134 RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       134 ~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      .+..|+......    -++...+...-.+..++
T Consensus        93 i~ADALrV~~~~----~D~~~L~~~~lqLqaAI  121 (459)
T KOG4340|consen   93 IYADALRVAFLL----LDNPALHSRVLQLQAAI  121 (459)
T ss_pred             ccHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Confidence            999998765433    33444444444444444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.97  E-value=0.029  Score=42.00  Aligned_cols=42  Identities=21%  Similarity=0.245  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC  128 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a  128 (429)
                      +++.+|..++++  |+|.+|+..++.+|+++|++..|......+
T Consensus         3 ~lY~lAig~ykl--~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKL--GEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHT--T-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHh--hhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            567799999999  999999999999999999998876555443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.89  E-value=0.075  Score=53.56  Aligned_cols=116  Identities=20%  Similarity=0.160  Sum_probs=81.3

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      .+.|......+......|+.+.|...|..|+.++|.++.    ++..+|...-.-  .+.-+|-.+|.+||.++|.+.+|
T Consensus       113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~----~L~e~G~f~E~~--~~iv~ADq~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ----ILIEMGQFREMH--NEIVEADQCYVKALTISPGNSEA  186 (472)
T ss_pred             hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH----HHHHHhHHHHhh--hhhHhhhhhhheeeeeCCCchHH
Confidence            355555566777788899999999999999999999985    777777765544  77888999999999999999999


Q ss_pred             HHHHHHHH---HHc-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 014213          122 LLKRARCY---EAL-NRLDLAFRDVTTVLNKEPK-NIMAAEIAERVK  163 (429)
Q Consensus       122 l~~rA~ay---~~L-G~~deAl~~~~kAL~l~P~-n~~a~~~La~l~  163 (429)
                      +.+|+...   ..+ .++=..+......+..-|. |...+....+.+
T Consensus       187 LvnR~RT~plV~~iD~r~l~svdskrd~~~~i~~sN~ALRR~m~EtY  233 (472)
T KOG3824|consen  187 LVNRARTTPLVSAIDRRMLRSVDSKRDEFNHIQHSNTALRRMMRETY  233 (472)
T ss_pred             HhhhhccchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            99987533   222 2344455555555544443 344444444433

>PLN03077 Protein ECB2; Provisional

Probab=95.85  E-value=0.12  Score=58.73  Aligned_cols=108  Identities=8%  Similarity=-0.031  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---CCCCHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKL--LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV---TPLYSK  120 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel--~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel---dP~~~k  120 (429)
                      ..|......|.+.|+.++|+..|++.++.  .|+..     .|..+-.++.+.  |.+++|+..++...+.   .| +..
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-----T~~~ll~a~~~~--g~v~ea~~~f~~M~~~~gi~P-~~~  626 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-----TFISLLCACSRS--GMVTQGLEYFHSMEEKYSITP-NLK  626 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-----cHHHHHHHHhhc--ChHHHHHHHHHHHHHHhCCCC-chH
Confidence            45888899999999999999999998874  45443     445555567777  9999999999998843   34 457


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      .|..+..+|...|++++|.+.+++. .+.|+ ..+|..+-..+
T Consensus       627 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac  667 (857)
T PLN03077        627 HYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNAC  667 (857)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHH
Confidence            8899999999999999999999875 35665 45555555544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.84  E-value=0.03  Score=46.36  Aligned_cols=67  Identities=15%  Similarity=0.055  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhhc
Q 014213          104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN--IMAAEIAERVKKELEKRG  170 (429)
Q Consensus       104 Ai~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n--~~a~~~La~l~~~l~e~~  170 (429)
                      .+..++.+++.+|++..+.|.+|.++...|++++|++.+-.++..+|+.  ..++..+-.+...++...
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            3567778888888888888888888888888888888888888887754  667777777777776533

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.83  E-value=0.076  Score=45.77  Aligned_cols=97  Identities=13%  Similarity=0.149  Sum_probs=74.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG---------LSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~---------~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      .+..+|.+|+|-.|++..+..+...+++.. .+.++.-.|..++++.         .--.-.++..+.++..+.|.....
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~-~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~   80 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDES-SWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS   80 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCc-hHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence            567899999999999999999999887663 2245666666665541         012445888889999999998888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      +|.+|.-+...-.|++++.-.+++|.+
T Consensus        81 L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   81 LFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            888888877777888888888888876

>smart00028 TPR Tetratricopeptide repeats

Probab=95.83  E-value=0.014  Score=35.66  Aligned_cols=31  Identities=26%  Similarity=0.486  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPL  117 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~  117 (429)
                      ++.++|.+|+.+  ++++.|+..+++++.++|.
T Consensus         3 ~~~~~a~~~~~~--~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKL--GDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHH--hhHHHHHHHHHHHHccCCC
Confidence            567788888888  8888888888888887775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.82  E-value=0.029  Score=56.44  Aligned_cols=77  Identities=18%  Similarity=0.097  Sum_probs=67.6

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213           87 SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus        87 ~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      .+.|.-..+.  |+.++|...|+.|+.++|+++.++...|...+.-.+.-+|-++|-+||.++|.|..++.+.++....
T Consensus       120 l~~A~~~~~~--Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~pl  196 (472)
T KOG3824|consen  120 LKAAGRSRKD--GKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPL  196 (472)
T ss_pred             HHHHHHHHhc--cchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchH
Confidence            3444444455  9999999999999999999999999999999999999999999999999999999999888874433

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.80  E-value=0.22  Score=58.34  Aligned_cols=93  Identities=10%  Similarity=-0.027  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----hCCCCHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLL--PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE----VTPLYSKA  121 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~--P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe----ldP~~~kA  121 (429)
                      |...-..|.+.|++++|+..|.......  |+.     ..|+.+..+|.+.  |++++|...+.+...    +.|+ ...
T Consensus       510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-----vTYnsLI~a~~k~--G~~deA~~lf~eM~~~~~gi~PD-~vT  581 (1060)
T PLN03218        510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-----VVFNALISACGQS--GAVDRAFDVLAEMKAETHPIDPD-HIT  581 (1060)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhcCCCCCc-HHH
Confidence            3344445555666666666665554432  221     2444455555555  555555555555543    2232 334


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      |..+-.+|...|++++|++.|+.....
T Consensus       582 ynaLI~ay~k~G~ldeA~elf~~M~e~  608 (1060)
T PLN03218        582 VGALMKACANAGQVDRAKEVYQMIHEY  608 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            444445555555555555555555544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.80  E-value=0.017  Score=39.19  Aligned_cols=28  Identities=21%  Similarity=0.177  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      +|.++|.+|..+|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4566666666666666666666664443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.026  Score=56.61  Aligned_cols=92  Identities=18%  Similarity=0.210  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----CC---
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT----PL---  117 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld----P~---  117 (429)
                      |..+++.|-.+|+.|+|+.|+..|+.|++...-++-    +-+|+|.|+++-  ++|..|+....+.++..    |.   
T Consensus       144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl----lAYniALaHy~~--~qyasALk~iSEIieRG~r~HPElgI  217 (459)
T KOG4340|consen  144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL----LAYNLALAHYSS--RQYASALKHISEIIERGIRQHPELGI  217 (459)
T ss_pred             cchhccchheeeccccHHHHHHHHHHHHhhcCCCch----hHHHHHHHHHhh--hhHHHHHHHHHHHHHhhhhcCCccCc
Confidence            455778888999999999999999999998877774    667899999988  99999998887776542    21   


Q ss_pred             ----------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 014213          118 ----------------------YSKALLKRARCYEALNRLDLAFRDV  142 (429)
Q Consensus       118 ----------------------~~kAl~~rA~ay~~LG~~deAl~~~  142 (429)
                                            -..|+...+-+++..++++.|.+.+
T Consensus       218 Gm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  218 GMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             cceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence                                  1235666677888888888876554

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.72  E-value=0.066  Score=52.91  Aligned_cols=81  Identities=19%  Similarity=0.290  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus        82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      ...+..|+=..|++.  ++++.|.....+.+.++|.++.-+.-+|.+|.++|.+.-|+.++...+..-|+.+.+.....+
T Consensus       180 l~rll~~lk~~~~~e--~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         180 LSRLLRNLKAALLRE--LQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHh--hchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            456778888889998  999999999999999999999999999999999999999999999999999999887666555


Q ss_pred             HHH
Q 014213          162 VKK  164 (429)
Q Consensus       162 l~~  164 (429)
                      +..
T Consensus       258 l~~  260 (269)
T COG2912         258 LLE  260 (269)
T ss_pred             HHH
Confidence            443

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.72  E-value=0.25  Score=57.84  Aligned_cols=114  Identities=8%  Similarity=-0.062  Sum_probs=61.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 014213           49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV--TPLYSKALLKRA  126 (429)
Q Consensus        49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel--dP~~~kAl~~rA  126 (429)
                      ...-..|.+.|++++|+..|+...+......   ...|+.+..+|.+.  |++++|+..|....+.  .|+ ...|..+.
T Consensus       583 naLI~ay~k~G~ldeA~elf~~M~e~gi~p~---~~tynsLI~ay~k~--G~~deAl~lf~eM~~~Gv~PD-~~TynsLI  656 (1060)
T PLN03218        583 GALMKACANAGQVDRAKEVYQMIHEYNIKGT---PEVYTIAVNSCSQK--GDWDFALSIYDDMKKKGVKPD-EVFFSALV  656 (1060)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence            3344456666666666666666665542111   13555566666666  6666666666665554  333 44555566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHh
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKE-PKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~-P~n~~a~~~La~l~~~l~e  168 (429)
                      .+|...|++++|++.++.+.+.. +.+...+..+-..+...++
T Consensus       657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~  699 (1060)
T PLN03218        657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN  699 (1060)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Confidence            66666666666666666666542 1233444444444444443

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.68  E-value=0.017  Score=55.95  Aligned_cols=56  Identities=21%  Similarity=0.271  Sum_probs=43.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213           98 LSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus        98 ~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                      .++++.|.+.|++|+++.|.|...|+++|.-....|+++.|.+.|++.|+++|.+-
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            37777777777888888888877888888777778888888888888888777653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.68  E-value=0.095  Score=58.20  Aligned_cols=115  Identities=7%  Similarity=-0.118  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CCHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLL--PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP--LYSK  120 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~--P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP--~~~k  120 (429)
                      ...|......|.+.|++++|+..|++.++..  |+.     ..|..+-.++.+.  |.+++|...++...+..+  .+..
T Consensus       391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~-----~T~~~ll~a~~~~--g~~~~a~~~f~~m~~~~g~~p~~~  463 (697)
T PLN03081        391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNH-----VTFLAVLSACRYS--GLSEQGWEIFQSMSENHRIKPRAM  463 (697)
T ss_pred             eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHhcC--CcHHHHHHHHHHHHHhcCCCCCcc
Confidence            3458888999999999999999999988753  332     3566666777777  999999999999886432  2345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      .|..+..+|...|++++|++.+++. ...|+ ...|..+-..+...+.
T Consensus       464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~  509 (697)
T PLN03081        464 HYACMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKN  509 (697)
T ss_pred             chHhHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC
Confidence            7888899999999999999998864 23454 4556666666555543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.61  E-value=0.067  Score=56.82  Aligned_cols=114  Identities=19%  Similarity=0.100  Sum_probs=83.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---------------
Q 014213           52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP---------------  116 (429)
Q Consensus        52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP---------------  116 (429)
                      -..+.+..+++.-+.+-.+||+++|+-+.    +|.-+|.-..    ....+|...+.+|++...               
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAd----AYILLAEEeA----~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~  246 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCAD----AYILLAEEEA----STIVEAEELLRQAVKAGEASLGKSQFLQHHGHF  246 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhH----HHhhcccccc----cCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence            34567899999999999999999997663    6665654321    235666666666664421               


Q ss_pred             ------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhhcccc
Q 014213          117 ------L----YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK--NIMAAEIAERVKKELEKRGLRV  173 (429)
Q Consensus       117 ------~----~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~--n~~a~~~La~l~~~l~e~~~a~  173 (429)
                            .    ...+-+++|.|...+|+.++|++.++..++..|.  +..++.++-.++-.++..+.+.
T Consensus       247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q  315 (539)
T PF04184_consen  247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQ  315 (539)
T ss_pred             hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHH
Confidence                  0    1335578899999999999999999999998885  5667777777777666555443

The molecular function of this protein is uncertain.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.58  E-value=0.081  Score=46.48  Aligned_cols=64  Identities=16%  Similarity=0.079  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL  112 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL  112 (429)
                      .....+...+..+...|++++|+..+.+++.++|.+..    +|..+-.+|..+  |++.+|+..|++..
T Consensus        60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~----~~~~lm~~~~~~--g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEE----AYRLLMRALAAQ--GRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH----HHHHHHHHHHHT--T-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHC--cCHHHHHHHHHHHH
Confidence            44455667788899999999999999999999999885    889999999999  99999999998764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.57  E-value=0.83  Score=41.93  Aligned_cols=113  Identities=16%  Similarity=0.011  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      ...|.+........++.+++...+...-.+.|+..+    +...-|..|+..  |+|.+|+..++.+.+-.|.++-+--.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e----~~~~~~~l~i~r--~~w~dA~rlLr~l~~~~~~~p~~kAL   83 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE----LDLFDGWLHIVR--GDWDDALRLLRELEERAPGFPYAKAL   83 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHh--CCHHHHHHHHHHHhccCCCChHHHHH
Confidence            456888888999999999999999998889999886    666678888887  99999999999999999999988888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      ++.|++.+|+..-=. +...++...+ ++.+......+...
T Consensus        84 lA~CL~~~~D~~Wr~-~A~evle~~~-d~~a~~Lv~~Ll~~  122 (160)
T PF09613_consen   84 LALCLYALGDPSWRR-YADEVLESGA-DPDARALVRALLAR  122 (160)
T ss_pred             HHHHHHHcCChHHHH-HHHHHHhcCC-ChHHHHHHHHHHHh
Confidence            899999999887654 3445666544 66666666655543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.53  E-value=0.18  Score=48.31  Aligned_cols=96  Identities=18%  Similarity=0.118  Sum_probs=73.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCC---CCCccHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHhCCC------
Q 014213           54 KLFQKRDHGGALLKYEKALKLLP---RNHIDVSYLRSNMAACYMQMGLSE-------YPRAIHECNLALEVTPL------  117 (429)
Q Consensus        54 ~lf~~gdyeeAl~~Y~kALel~P---~~~~~~a~l~~nrA~~y~kl~~g~-------y~eAi~~~~~ALeldP~------  117 (429)
                      .+-..+.+++|+..|.-||-..-   ..+...+.++..+|.+|-.+  ++       +..|+..|.+|++....      
T Consensus        86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~--~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~  163 (214)
T PF09986_consen   86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDL--GDEENEKRFLRKALEFYEEAYENEDFPIEGMD  163 (214)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHHHhCcCCCCCch
Confidence            56667889999999998876532   23334678888899999888  77       45566667777665432      


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      ....+|.+|..++.+|++++|++.|.+++..--.
T Consensus       164 ~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  164 EATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            2578899999999999999999999999987433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.073  Score=54.18  Aligned_cols=95  Identities=18%  Similarity=0.189  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc----------------------------------HHHHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID----------------------------------VSYLRSNMAAC   92 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~----------------------------------~a~l~~nrA~~   92 (429)
                      ..-..+..++.+|++.+|...+++.|.-.|.+-..                                  ..+++-..|.+
T Consensus       105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg  184 (491)
T KOG2610|consen  105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG  184 (491)
T ss_pred             hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence            34455778889999999999999999888875420                                  02344445555


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014213           93 YMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVT  143 (429)
Q Consensus        93 y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~  143 (429)
                      ++..  |-|++|...+++|++++|.+..|...++.++...|++.+++++..
T Consensus       185 L~E~--g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  185 LEEC--GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             HHHh--ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence            5555  566666666666666666666666666666666666665555544

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.46  E-value=0.0038  Score=63.20  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=70.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccc
Q 014213           99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND  175 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e  175 (429)
                      |.++.||..|..||.++|.....|-.|+.+|..|++...|+.+|..|+.++|+...-+...+.+...++....+...
T Consensus       128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999988888888888888776655553

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.44  E-value=0.52  Score=46.29  Aligned_cols=118  Identities=16%  Similarity=0.132  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHhCCCCHH-
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG------LSEYPRAIHECNLALEVTPLYSK-  120 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~------~g~y~eAi~~~~~ALeldP~~~k-  120 (429)
                      ....+-.+++.++|++|+...++-+.+.|+++ ....+++.+|.+++..-      +.-..+|+..+...|+.-|+..- 
T Consensus        74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya  152 (254)
T COG4105          74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-NADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA  152 (254)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence            56788999999999999999999999999887 46677778888877641      12246788899999999887421 


Q ss_pred             --------------HH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          121 --------------AL--LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       121 --------------Al--~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                                    |.  +..|.-|...|.|-.|..-++.+++--|+...+...|..+....
T Consensus       153 ~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY  214 (254)
T COG4105         153 PDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAY  214 (254)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence                          12  33477888999999999999999999888776666665554444

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.43  E-value=0.17  Score=56.85  Aligned_cols=92  Identities=21%  Similarity=0.179  Sum_probs=75.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213           54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN  133 (429)
Q Consensus        54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG  133 (429)
                      .....++|..|+....+.++..|+..    ++...-|..+.++  |.+++|...++..-...+++-..+--+-.||..++
T Consensus        18 d~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~--gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~   91 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRL--GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG   91 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHh--cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence            45677889999999999999999866    4666678888888  99999994444444455677788888889999999


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 014213          134 RLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       134 ~~deAl~~~~kAL~l~P~  151 (429)
                      ++++|+..|++++.-+|+
T Consensus        92 ~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   92 KLDEAVHLYERANQKYPS  109 (932)
T ss_pred             hhhHHHHHHHHHHhhCCc
Confidence            999999999999999998

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.18  E-value=0.23  Score=50.68  Aligned_cols=69  Identities=13%  Similarity=-0.060  Sum_probs=44.1

Q ss_pred             CCHHHHHHHHHHHHHh-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213           99 SEYPRAIHECNLALEV-TPL---YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus        99 g~y~eAi~~~~~ALel-dP~---~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      |+.......+++.+.. +|+   ++-..-..|.++...|-|++|.+..+++++++|.+..+....+-+...-+
T Consensus       151 G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~  223 (491)
T KOG2610|consen  151 GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNG  223 (491)
T ss_pred             cchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcc
Confidence            5555555555555544 433   24444455677778888888888888888888877776666666654433

>PLN03077 Protein ECB2; Provisional

Probab=95.10  E-value=0.35  Score=55.00  Aligned_cols=115  Identities=7%  Similarity=-0.065  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +...-..+.+.|++++|...|+...+..+-.+.  ...|..+..+|.+.  |++++|...++.. .+.|+ ...|..+-.
T Consensus       592 ~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~--~~~y~~lv~~l~r~--G~~~eA~~~~~~m-~~~pd-~~~~~aLl~  665 (857)
T PLN03077        592 FISLLCACSRSGMVTQGLEYFHSMEEKYSITPN--LKHYACVVDLLGRA--GKLTEAYNFINKM-PITPD-PAVWGALLN  665 (857)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhC--CCHHHHHHHHHHC-CCCCC-HHHHHHHHH
Confidence            333345677889999999999998854332221  13678888999998  9999999988764 45665 556666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      ++..-++.+.|....+++++++|++...+..+..++...++
T Consensus       666 ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~  706 (857)
T PLN03077        666 ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK  706 (857)
T ss_pred             HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence            78888999999999999999999999988888877765543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.03  E-value=0.044  Score=37.11  Aligned_cols=25  Identities=32%  Similarity=0.458  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014213           86 RSNMAACYMQMGLSEYPRAIHECNLAL  112 (429)
Q Consensus        86 ~~nrA~~y~kl~~g~y~eAi~~~~~AL  112 (429)
                      |.++|.+|.++  |+|++|+..|+++|
T Consensus         2 l~~Lg~~~~~~--g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQ--GDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHC--T-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence            34455555555  55555555555533

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.81  E-value=0.8  Score=44.74  Aligned_cols=124  Identities=15%  Similarity=0.117  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----
Q 014213           48 LKEEGNKLFQK-RDHGGALLKYEKALKLLPRNHID--VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS-----  119 (429)
Q Consensus        48 lk~~Gn~lf~~-gdyeeAl~~Y~kALel~P~~~~~--~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~-----  119 (429)
                      +++.|..|=.. .+++.|+.+|++|-+....+...  ...++...|..-.++  ++|.+||..|++.....-++.     
T Consensus       116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l--eqY~~Ai~iyeqva~~s~~n~LLKys  193 (288)
T KOG1586|consen  116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL--EQYSKAIDIYEQVARSSLDNNLLKYS  193 (288)
T ss_pred             hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccchHHHhH
Confidence            44666666555 78999999999999987754421  123445555555566  899999999998876654432     


Q ss_pred             -H-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHhhcccc
Q 014213          120 -K-ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA--EIAERVKKELEKRGLRV  173 (429)
Q Consensus       120 -k-Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~--~~La~l~~~l~e~~~a~  173 (429)
                       + -++..|.|+....+.-.+-..+++...++|+....+  ..+..+...+.+...+.
T Consensus       194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d~e~  251 (288)
T KOG1586|consen  194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQDIEK  251 (288)
T ss_pred             HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhhHHH
Confidence             2 356668899998999999999999999999765443  45566666666554443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.76  E-value=0.15  Score=50.45  Aligned_cols=123  Identities=17%  Similarity=0.080  Sum_probs=88.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------CCCCccHHHHHHHHHHHHHHc--CCCCHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLL-------------------------PRNHIDVSYLRSNMAACYMQM--GLSEYP  102 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~-------------------------P~~~~~~a~l~~nrA~~y~kl--~~g~y~  102 (429)
                      .-|..+...++|++|+........+.                         -.-.+  -..+..+|.+|.++  +-+.+.
T Consensus       113 ~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~q  190 (299)
T KOG3081|consen  113 LAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQ  190 (299)
T ss_pred             HhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhh
Confidence            34677888888888886654422211                         10000  12344456555554  124688


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          103 RAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       103 eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .|.-.|+..-+.-|..+..+...|.|+..+|+|++|...++.||.-++++++++.++-.+-..++.......
T Consensus       191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence            888888888887777888999999999999999999999999999999999999988877776665544444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.72  E-value=0.058  Score=34.79  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPL  117 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~  117 (429)
                      +++++|.||.++  |++++|+..+++++...|+
T Consensus         2 a~~~~a~~~~~~--g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKL--GDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHH--CHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCcC
Confidence            456677777776  7777777777777776665

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.64  E-value=0.57  Score=43.46  Aligned_cols=100  Identities=11%  Similarity=-0.006  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CCHHH-
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP--LYSKA-  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP--~~~kA-  121 (429)
                      ...+.++|+-|++-|+++.|+..|.++.+...... ....++.++-.+.+-+  ++|..+.....+|-.+-.  .++.. 
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~-~~id~~l~~irv~i~~--~d~~~v~~~i~ka~~~~~~~~d~~~~  112 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG-HKIDMCLNVIRVAIFF--GDWSHVEKYIEKAESLIEKGGDWERR  112 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH-HHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhccchHHHH
Confidence            45688999999999999999999999888754332 3445556666666667  999999999998876532  22222 


Q ss_pred             ---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213          122 ---LLKRARCYEALNRLDLAFRDVTTVLN  147 (429)
Q Consensus       122 ---l~~rA~ay~~LG~~deAl~~~~kAL~  147 (429)
                         .-..|.++...++|..|-..|-.++.
T Consensus       113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  113 NRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence               22336777788899999877766553

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.55  E-value=0.24  Score=40.92  Aligned_cols=66  Identities=18%  Similarity=0.172  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCH
Q 014213           64 ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--SKALLKRARCYEALNRL  135 (429)
Q Consensus        64 Al~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--~kAl~~rA~ay~~LG~~  135 (429)
                      .+..+++++..+|++..    +.+.+|.+++..  |+|++|+..+-.+++.+++|  ..+--.+-.++..+|.-
T Consensus         7 ~~~al~~~~a~~P~D~~----ar~~lA~~~~~~--g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLD----ARYALADALLAA--GDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HH----HHHHHHHHHHHT--T-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            46678999999999985    888999999999  99999999999999999887  34444444555555543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.51  E-value=0.16  Score=52.22  Aligned_cols=99  Identities=22%  Similarity=0.229  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc------cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC------
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI------DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT------  115 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~------~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld------  115 (429)
                      +...|..+-+.+||+.|+.+..+|+++......      .+...++.++.+|-.+  |+...|.+.|++|.++.      
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~--G~LgdA~e~C~Ea~klal~~Gdr  242 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLL--GRLGDAMECCEEAMKLALQHGDR  242 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHh--cccccHHHHHHHHHHHHHHhCCh
Confidence            456788888999999999999999998654331      2345667788888888  99999999999998774      


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          116 PLYSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       116 P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      |.+...+.-+|.+|..+|+.+.|..-|+.|...
T Consensus       243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            456677888899999999999999999999875

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.40  E-value=0.45  Score=47.16  Aligned_cols=101  Identities=14%  Similarity=-0.032  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      |....+..-+.+..+.|-..|.+|+...+...    .+|...|..-++. .++...|...|++++..-|.+...|+....
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~----~vy~~~A~~E~~~-~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~   78 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTY----HVYVAYALMEYYC-NKDPKRARKIFERGLKKFPSDPDFWLEYLD   78 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T----HHHHHHHHHHHHT-CS-HHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            44455555555568889999999985433334    3666666665553 166666999999999999999999999889


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                      -+..+++.+.|...|++++..-|...
T Consensus        79 ~l~~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   79 FLIKLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             HHHHhCcHHHHHHHHHHHHHhcCchh
Confidence            99999999999999999998877655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.37  E-value=0.4  Score=51.18  Aligned_cols=104  Identities=13%  Similarity=-0.008  Sum_probs=80.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcC
Q 014213           58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS----KALLKRARCYEALN  133 (429)
Q Consensus        58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~----kAl~~rA~ay~~LG  133 (429)
                      ..+.+.|.......+...|+..    ..+...|..+...  |+.++|+..+++++.....+.    -.++.+|.|+..+.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~----lfl~~~gR~~~~~--g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~  319 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSA----LFLFFEGRLERLK--GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH  319 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHh--cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc
Confidence            4456778888888888889876    3677788888888  999999999999996554443    36899999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHH
Q 014213          134 RLDLAFRDVTTVLNKEPKNIMAAEIAER-VKKELE  167 (429)
Q Consensus       134 ~~deAl~~~~kAL~l~P~n~~a~~~La~-l~~~l~  167 (429)
                      +|++|..+|.+.++.+.-....+..+.- ++..++
T Consensus       320 ~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~  354 (468)
T PF10300_consen  320 DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG  354 (468)
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence            9999999999999976655554444444 444343

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.11  E-value=1.6  Score=43.32  Aligned_cols=124  Identities=15%  Similarity=0.084  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--C-C---
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV--T-P---  116 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel--d-P---  116 (429)
                      ..+..+...+..+.+.|.++.|...+.++....+........+..-.+..+...  |+..+|+..+...+..  . +   
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~--g~~~~Ai~~L~~~~~~~~~~~~~~  221 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQ--GEQEEAIQKLRELLKCRLSKNIDS  221 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhhhcccc
Confidence            445678888999999999999999999999877433221223555567777777  9999999988887771  1 0   


Q ss_pred             ----------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213          117 ----------------------------LYSKALLKRARCYEAL------NRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus       117 ----------------------------~~~kAl~~rA~ay~~L------G~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                                                  ...++++.+|.-...+      +.+++++..|..++.++|+...++..++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence                                        1235677777777777      888999999999999999999999998888


Q ss_pred             HHHHHh
Q 014213          163 KKELEK  168 (429)
Q Consensus       163 ~~~l~e  168 (429)
                      ...+-+
T Consensus       302 ~~~~~~  307 (352)
T PF02259_consen  302 NDKLLE  307 (352)
T ss_pred             HHHHHH
Confidence            776643

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.08  E-value=0.069  Score=56.62  Aligned_cols=86  Identities=16%  Similarity=0.070  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------CCCCC-----ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALK-L--------LPRNH-----IDVSYLRSNMAACYMQMGLSEYPRAIHECNL  110 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALe-l--------~P~~~-----~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~  110 (429)
                      ...+++.|-.+|+.|.|.-+..+|.+||+ .        .|.-.     .-.--+++|.|..|+.+  |+.-.|.++|.+
T Consensus       283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~--grPl~AfqCf~~  360 (696)
T KOG2471|consen  283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHS--GRPLLAFQCFQK  360 (696)
T ss_pred             heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhc--CCcHHHHHHHHH
Confidence            34467889999999999999999999996 1        11100     01124788999999999  999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHc
Q 014213          111 ALEVTPLYSKALLKRARCYEAL  132 (429)
Q Consensus       111 ALeldP~~~kAl~~rA~ay~~L  132 (429)
                      +...--.+++.|+|+|.|+..-
T Consensus       361 av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  361 AVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHH
Confidence            9999999999999999998753

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.08  E-value=0.068  Score=51.84  Aligned_cols=60  Identities=22%  Similarity=0.186  Sum_probs=54.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 014213           54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS  119 (429)
Q Consensus        54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~  119 (429)
                      .+++.+|++.|.+.|.+|+++.|....    .|+.+|....+.  |+++.|...|++.|+++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~----gwfR~g~~~eka--g~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAA----GWFRLGEYTEKA--GEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhh----hhhhcchhhhhc--ccHHHHHHHHHHHHcCCcccc
Confidence            467889999999999999999998774    899999999998  999999999999999999764

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.07  E-value=0.16  Score=54.93  Aligned_cols=101  Identities=14%  Similarity=0.097  Sum_probs=86.8

Q ss_pred             HHHHHHH-HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           50 EEGNKLF-QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC  128 (429)
Q Consensus        50 ~~Gn~lf-~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a  128 (429)
                      ..+..|+ .+|+..+|+.+|..|+.+.|....++  ++..+|..+.++  |...+|--.+..|+.-.|....-+|.++.+
T Consensus       217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi--~lLSlaTiL~Ra--G~sadA~iILhAA~~dA~~~t~n~y~l~~i  292 (886)
T KOG4507|consen  217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNKDI--ALLSLATVLHRA--GFSADAAVILHAALDDADFFTSNYYTLGNI  292 (886)
T ss_pred             HHHHHHHHHcCChhhhhHHHHHHhhhCCcccccc--hhhhHHHHHHHc--ccccchhheeehhccCCccccccceeHHHH
Confidence            4444444 48999999999999999999866544  566799999999  999999988899998888887789999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          129 YEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       129 y~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                      |.+++.|...+..|..+++..|....
T Consensus       293 ~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  293 YAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             HHHHhhhhhhhhhhhhhhccCcchhH
Confidence            99999999999999999999997644

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.95  E-value=1.9  Score=42.51  Aligned_cols=116  Identities=16%  Similarity=0.045  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----CCC
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV-----TPL  117 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel-----dP~  117 (429)
                      |..+...++.|-...+|+.|-.++.+|++...++..  +.+..|-..+...-.+  ..+.++...+++|..+     .|+
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~--~klsEvvdl~eKAs~lY~E~Gspd  108 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKEL--SKLSEVVDLYEKASELYVECGSPD  108 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHhCCcc
Confidence            455666677777889999999999999977665543  2344555555556666  8899999999999876     355


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Q 014213          118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEP---KNIMAAEIAERV  162 (429)
Q Consensus       118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P---~n~~a~~~La~l  162 (429)
                      -.-.-+.+|--....-+.++|++.|++++.+--   ....+...++.+
T Consensus       109 tAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~  156 (308)
T KOG1585|consen  109 TAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC  156 (308)
T ss_pred             hHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence            444444444444556789999999999987733   334444444443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.94  E-value=0.29  Score=40.44  Aligned_cols=58  Identities=16%  Similarity=0.225  Sum_probs=26.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213           55 LFQKRDHGGALLKYEKALKLLPRNHI-----DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV  114 (429)
Q Consensus        55 lf~~gdyeeAl~~Y~kALel~P~~~~-----~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel  114 (429)
                      ....|+|.+|++.+.+.+........     ....+..++|.++..+  |++++|+..+++|+++
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~--G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRF--GHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence            34556666666665555555443221     1123334444444444  4444444444444443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.82  E-value=0.73  Score=45.66  Aligned_cols=114  Identities=16%  Similarity=0.133  Sum_probs=97.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 014213           55 LFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNR  134 (429)
Q Consensus        55 lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~  134 (429)
                      +++...-..|+.+-..+|.++|.+..    +|..|-.|+-.| ..+..+-+.+.++.++-+|.+...|..|-.+...+|+
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYT----VW~yRr~iL~~l-~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d  127 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYT----VWQYRRVILRHL-MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD  127 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccch----HHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC
Confidence            34455567899999999999999984    777777777666 2577888999999999999999999999999999999


Q ss_pred             HH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccc
Q 014213          135 LD-LAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRV  173 (429)
Q Consensus       135 ~d-eAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~  173 (429)
                      +. .-+...+.++..+..|--+|...+.+....+....+.
T Consensus       128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL  167 (318)
T KOG0530|consen  128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL  167 (318)
T ss_pred             cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence            88 8899999999999999999999999998887644433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.63  E-value=1  Score=44.85  Aligned_cols=106  Identities=17%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCC-----------------------------CccHHHHHHHHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALK-LLPRN-----------------------------HIDVSYLRSNMAACYMQ   95 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALe-l~P~~-----------------------------~~~~a~l~~nrA~~y~k   95 (429)
                      ....+.+..++..|+..+|+......+. .....                             ....+.++..+|.....
T Consensus       185 ~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~  264 (352)
T PF02259_consen  185 RVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE  264 (352)
T ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHh
Confidence            3456778888899999999999988888 22111                             01234555666655555


Q ss_pred             c----CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 014213           96 M----GLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRL-----------------DLAFRDVTTVLNKEPK  151 (429)
Q Consensus        96 l----~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~-----------------deAl~~~~kAL~l~P~  151 (429)
                      +    ..+.+++++..|..|+.++|.+.++|+..|..+..+=..                 ..|+..|-+++.+.+.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  265 LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            4    457889999999999999999999999999877655221                 3488888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.61  E-value=0.16  Score=34.25  Aligned_cols=29  Identities=28%  Similarity=0.354  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEV  114 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel  114 (429)
                      .++.|+|.+|..+  |+|++|+..+++++.+
T Consensus         3 ~~~~~la~~~~~~--g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQ--GRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHC--T-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--hhcchhhHHHHHHHHH
Confidence            3455555555555  5555555555555543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.60  E-value=1.1  Score=48.70  Aligned_cols=106  Identities=18%  Similarity=0.038  Sum_probs=82.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCCCHHHHHHH----
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE-YPRAIHECNLALEVTPLYSKALLKR----  125 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~-y~eAi~~~~~ALeldP~~~kAl~~r----  125 (429)
                      ....+...++...|+.....++..+|.+..    ++.|++.+.+..  +. +.-++..+..+....|++..++..+    
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~L~~ale~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  146 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCP----AVQNLAAALELD--GLQFLALADISEIAEWLSPDNAEFLGHLIRFY  146 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccch----HHHHHHHHHHHh--hhHHHHHHHHHHHHHhcCcchHHHHhhHHHHH
Confidence            445556677777888888888888888886    888888887776  54 4445555556889999988876666    


Q ss_pred             --HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213          126 --ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus       126 --A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                        +..+..+++..++..++.+++.+.|.++.+...+...
T Consensus       147 ~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         147 QLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence              8888888899999999999999999887766666555

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.25  E-value=1  Score=47.94  Aligned_cols=119  Identities=14%  Similarity=0.092  Sum_probs=96.5

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCC
Q 014213           57 QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--SKALLKRARCYEALNR  134 (429)
Q Consensus        57 ~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--~kAl~~rA~ay~~LG~  134 (429)
                      ...|.+.+-..|+.+|++.|.-.-..+.+|...|.-..+.  -+...|...+-.||...|.+  .+.|.   ..-..|++
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq--~~l~~ARkiLG~AIG~cPK~KlFk~YI---elElqL~e  452 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQ--LNLTGARKILGNAIGKCPKDKLFKGYI---ELELQLRE  452 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHH--cccHHHHHHHHHHhccCCchhHHHHHH---HHHHHHhh
Confidence            5678889999999999999987766777888777777776  89999999999999999974  23333   23457789


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccC
Q 014213          135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       135 ~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                      ++.....|++.|...|.|-.+|...+.+...|++...+-.-....+
T Consensus       453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi  498 (677)
T KOG1915|consen  453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAI  498 (677)
T ss_pred             HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999987665554333334

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.06  E-value=4.1  Score=40.21  Aligned_cols=106  Identities=11%  Similarity=0.057  Sum_probs=78.1

Q ss_pred             HhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC----C---C---ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213           42 IGMSQELKEEGNKLFQKR-DHGGALLKYEKALKLLPR----N---H---IDVSYLRSNMAACYMQMGLSEYPRAIHECNL  110 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~g-dyeeAl~~Y~kALel~P~----~---~---~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~  110 (429)
                      ...+..+++-|..++.++ +|+.|+..+++|+++...    .   +   +.+..++..++.+|+..  +.++... -|..
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~--~~~~~~~-ka~~  108 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEW--DTYESVE-KALN  108 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcC--CChHHHH-HHHH
Confidence            388899999999999999 999999999999998421    1   1   13567888899999998  6655333 3444


Q ss_pred             HHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213          111 ALEV----TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP  150 (429)
Q Consensus       111 ALel----dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P  150 (429)
                      +++.    -|+.+..++..=.++...++.+++.+.+.+.+..-+
T Consensus       109 ~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  109 ALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            4433    477666664444444458899999999999888654

It is also involved in sporulation [].

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.01  E-value=0.23  Score=33.48  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          119 SKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      ..++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357899999999999999999999999976

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=93.00  E-value=0.97  Score=48.13  Aligned_cols=99  Identities=18%  Similarity=0.082  Sum_probs=87.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC  128 (429)
Q Consensus        49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a  128 (429)
                      ..-|.---.++++..|-..|++||..+-.+.+    +|...+.+-|+-  .....|...+++|+.+-|.--+.||..-..
T Consensus        77 ikYaqwEesq~e~~RARSv~ERALdvd~r~it----LWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   77 IKYAQWEESQKEIQRARSVFERALDVDYRNIT----LWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhcccccch----HHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            33344444678899999999999999988885    999999998887  999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213          129 YEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       129 y~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                      -..||+...|.+.|++=+...|+..
T Consensus       151 EE~LgNi~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  151 EEMLGNIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             HHHhcccHHHHHHHHHHHcCCCcHH
Confidence            9999999999999999999999753

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=92.94  E-value=0.67  Score=44.39  Aligned_cols=89  Identities=17%  Similarity=0.070  Sum_probs=66.4

Q ss_pred             HHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213           40 VFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL  117 (429)
Q Consensus        40 ~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~  117 (429)
                      ..|+.|--++..|+......=+..|+..|.+|++....  ...+...+.+.+|..+.++  |++++|+.++.+++...-.
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrl--g~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRL--GNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHcCCCC
Confidence            45566777777777666666688999999999987654  3334567888899999999  9999999999999976533


Q ss_pred             C-HHHHHHHHHHHH
Q 014213          118 Y-SKALLKRARCYE  130 (429)
Q Consensus       118 ~-~kAl~~rA~ay~  130 (429)
                      . ...+..+|+-+.
T Consensus       198 s~~~~l~~~AR~~w  211 (214)
T PF09986_consen  198 SKEPKLKDMARDQW  211 (214)
T ss_pred             CCcHHHHHHHHHHH
Confidence            3 246666665443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=92.80  E-value=1.5  Score=49.59  Aligned_cols=108  Identities=15%  Similarity=0.054  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      ....|..+++.|++++|+.+. +++...+.+..   ..+.-+-.||-.+  +++++|...|++++..+|. -.-++.+-.
T Consensus        46 ~vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~---~tLq~l~~~y~d~--~~~d~~~~~Ye~~~~~~P~-eell~~lFm  118 (932)
T KOG2053|consen   46 KVLKALSLFRLGKGDEALKLL-EALYGLKGTDD---LTLQFLQNVYRDL--GKLDEAVHLYERANQKYPS-EELLYHLFM  118 (932)
T ss_pred             HHHHHHHHHHhcCchhHHHHH-hhhccCCCCch---HHHHHHHHHHHHH--hhhhHHHHHHHHHHhhCCc-HHHHHHHHH
Confidence            345788999999999999544 55555554432   3566788999999  9999999999999999999 888999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      ||.+-+.|..=-+.--+..+.-|+++-.....-.+
T Consensus       119 ayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl  153 (932)
T KOG2053|consen  119 AYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL  153 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence            99999999876666666666788887654444443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.60  E-value=1.2  Score=43.66  Aligned_cols=104  Identities=15%  Similarity=0.133  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLP--RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P--~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k  120 (429)
                      +.+.-+...||.|-...+|..|=..|-+|-++--  .+..+.++.|.-.+.||-+   .+..+|+..+++|+++--+-.+
T Consensus        32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk---~~~~eAv~cL~~aieIyt~~Gr  108 (288)
T KOG1586|consen   32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK---VDPEEAVNCLEKAIEIYTDMGR  108 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc---cChHHHHHHHHHHHHHHHhhhH
Confidence            3345566667777778889999888988876543  2333567889999999977   6999999999999999755333


Q ss_pred             ------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Q 014213          121 ------ALLKRARCYEAL-NRLDLAFRDVTTVLNKE  149 (429)
Q Consensus       121 ------Al~~rA~ay~~L-G~~deAl~~~~kAL~l~  149 (429)
                            -+..+|..|+.- .+++.|+.+|+.|-..-
T Consensus       109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y  144 (288)
T KOG1586|consen  109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY  144 (288)
T ss_pred             HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence                  355778888755 89999999999988763

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.54  E-value=1.4  Score=36.19  Aligned_cols=51  Identities=14%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             CCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213           99 SEYPRAIHECNLALEVTPL---------YSKALLKRARCYEALNRLDLAFRDVTTVLNKE  149 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~---------~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~  149 (429)
                      ++|..|++.+.+.++....         ..-+++++|.++..+|++++|+..+++|+.+.
T Consensus        12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen   12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            9999999988888765421         34688999999999999999999999999884

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=92.50  E-value=1.9  Score=42.74  Aligned_cols=105  Identities=12%  Similarity=0.047  Sum_probs=76.9

Q ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH--H-HHH
Q 014213           48 LKEEGNKLFQ-KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS--K-ALL  123 (429)
Q Consensus        48 lk~~Gn~lf~-~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~--k-Al~  123 (429)
                      |..-|..-+. .++.+.|...|+.+++..|.+..    +|..-...+..+  ++...|...|++++..-|...  + .|-
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----~~~~Y~~~l~~~--~d~~~aR~lfer~i~~l~~~~~~~~iw~  111 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----FWLEYLDFLIKL--NDINNARALFERAISSLPKEKQSKKIWK  111 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH----HHHHHHHHHHHT--T-HHHHHHHHHHHCCTSSCHHHCHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHh--CcHHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            5555665455 77888899999999999999875    555555667777  999999999999998876654  3 444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEI  158 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~  158 (429)
                      +...-=...|+++......+++..+-|.+......
T Consensus       112 ~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f  146 (280)
T PF05843_consen  112 KFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF  146 (280)
T ss_dssp             HHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence            44555567889999999999999999986554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=92.39  E-value=0.86  Score=52.60  Aligned_cols=116  Identities=10%  Similarity=0.159  Sum_probs=87.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-----LSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~-----~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      -.+.++....|+.|+..|.+...-.|.-.+-+ -+.+..|.+.+..-     +..+.+|+..|++. .-.|.-+--|+..
T Consensus       481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  558 (932)
T PRK13184        481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGY-EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGK  558 (932)
T ss_pred             CcHHHHhhHHHHHHHHHHHHHhhcCCCcccch-HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhH
Confidence            35677788999999999999999999755421 13344555544320     12477777777654 3345666779999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      |.+|..+|+|++-+++|.-|++.-|+++..-.....+..+|.+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (932)
T PRK13184        559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE  601 (932)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888888777777754

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.37  E-value=4.9  Score=36.59  Aligned_cols=109  Identities=15%  Similarity=0.035  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+.+.........++.++.......--+-|+..+    +...-+..|+..  |+|.+|+..++...+-.+.++-+--.+
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e----~d~~dg~l~i~r--g~w~eA~rvlr~l~~~~~~~p~~kAL~   84 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKE----LDMFDGWLLIAR--GNYDEAARILRELLSSAGAPPYGKALL   84 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc----cchhHHHHHHHc--CCHHHHHHHHHhhhccCCCchHHHHHH
Confidence            44556666666799999999998888888899886    666677888887  999999999999999998888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      +.|++.+|+.+-=. +...++...+ ++++......+
T Consensus        85 A~CL~al~Dp~Wr~-~A~~~le~~~-~~~a~~Lv~al  119 (153)
T TIGR02561        85 ALCLNAKGDAEWHV-HADEVLARDA-DADAVALVRAL  119 (153)
T ss_pred             HHHHHhcCChHHHH-HHHHHHHhCC-CHhHHHHHHHH
Confidence            99999999977643 3344554433 44544444443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=92.32  E-value=0.69  Score=37.60  Aligned_cols=66  Identities=15%  Similarity=0.301  Sum_probs=47.3

Q ss_pred             EEccCCccHHHHHHHHHhhCCC-CCceEEEEE-CCCCCEEEecChHHHHHHHHhhccCCcEEEEEEeeCC
Q 014213          275 AQLPLNSSLLQLREVISDRFPS-CRAVLIKYR-DEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNP  342 (429)
Q Consensus       275 ~~i~~~~~~~~L~~~v~~kf~~-~~~~~iky~-DedgDliti~~~~dl~~a~~~~~~~~~~rl~v~e~~~  342 (429)
                      ..+|.++++.+|..++...|+. ...++|.|+ |.+|..+...++|+-.  +.......-++|+|.+.+|
T Consensus        18 kr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~--L~~y~~~dg~~i~V~D~~p   85 (87)
T PF14560_consen   18 KRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDAT--LGSYGIKDGMRIHVVDTNP   85 (87)
T ss_dssp             EEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSB--CCHHT-STTEEEEEEE-T-
T ss_pred             EEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccE--eecCCCCCCCEEEEEeCCC
Confidence            4489999999999999999964 466999999 6777777777665531  2222333449999998876

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=92.11  E-value=1.7  Score=46.51  Aligned_cols=94  Identities=14%  Similarity=0.045  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHH
Q 014213           62 GGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNR-LDLAFR  140 (429)
Q Consensus        62 eeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~-~deAl~  140 (429)
                      ..-+..|..|+...+.+..    +|++-.. |++. .+.|.+.-..|.++|...|+++..|..-|.-.+..+. .+.|..
T Consensus        88 ~rIv~lyr~at~rf~~D~~----lW~~yi~-f~kk-~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRa  161 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVK----LWLSYIA-FCKK-KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARA  161 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHH----HHHHHHH-HHHH-hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHH
Confidence            3456789999998888774    6665433 3333 1569999999999999999999999999988877776 899999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHH
Q 014213          141 DVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus       141 ~~~kAL~l~P~n~~a~~~La~  161 (429)
                      .|.++|..+|+++..+...=+
T Consensus       162 lflrgLR~npdsp~Lw~eyfr  182 (568)
T KOG2396|consen  162 LFLRGLRFNPDSPKLWKEYFR  182 (568)
T ss_pred             HHHHHhhcCCCChHHHHHHHH
Confidence            999999999999987765544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.08  E-value=1.7  Score=45.41  Aligned_cols=94  Identities=20%  Similarity=0.064  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      ...++....-.|+|++|-..|+..+. +|...     ++-.+|..+...+.|.++.|+++..+|-+..|.-..++...-.
T Consensus       123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-----llGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe  196 (531)
T COG3898         123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETR-----LLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE  196 (531)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH-----HHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence            45678888889999999999987665 45432     3344454444444599999999999999999999999999889


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 014213          128 CYEALNRLDLAFRDVTTVLN  147 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~  147 (429)
                      .....|+|+.|++.++....
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHH
Confidence            99999999999999977654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.85  E-value=1.7  Score=46.59  Aligned_cols=60  Identities=13%  Similarity=0.072  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL--YSKALLKRARCYEALNRLDLAFRDVTTV  145 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~--~~kAl~~rA~ay~~LG~~deAl~~~~kA  145 (429)
                      .+...+|.|.-++  |+.++||..+...++..|.  +....+++-.||..++.|.++-..+.+.
T Consensus       260 y~KrRLAmCarkl--Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  260 YAKRRLAMCARKL--GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhHHHHHHHHHHh--CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            4556677777777  7777777777777766654  4556777777777777777776666654

The molecular function of this protein is uncertain.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.44  E-value=2.4  Score=44.36  Aligned_cols=96  Identities=17%  Similarity=0.069  Sum_probs=73.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC---CCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           54 KLFQKRDHGGALLKYEKALKLL---PRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCY  129 (429)
Q Consensus        54 ~lf~~gdyeeAl~~Y~kALel~---P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay  129 (429)
                      .....|+|+.|+.+.+......   +...+ .++.++...+...+.   .+...|..+...++.+.|++..+-.--+.+|
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld---adp~~Ar~~A~~a~KL~pdlvPaav~AAral  273 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD---ADPASARDDALEANKLAPDLVPAAVVAARAL  273 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcCCccchHHHHHHHHH
Confidence            4557788888888877554432   22111 245666666666555   4888999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC
Q 014213          130 EALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       130 ~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      ...|+...+-..++.+-+.+|+-
T Consensus       274 f~d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         274 FRDGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             HhccchhhhhhHHHHHHhcCCCh
Confidence            99999999999999999998853

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.32  E-value=1.1  Score=44.49  Aligned_cols=75  Identities=21%  Similarity=0.191  Sum_probs=64.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC  128 (429)
Q Consensus        49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a  128 (429)
                      .+.=+.|...++++.|+.+-++.|.++|.++.    -+.-+|.+|.++  |.+.-|+.++...++..|+.+.+-.-++..
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~----eirDrGliY~ql--~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l  258 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPY----EIRDRGLIYAQL--GCYHVALEDLSYFVEHCPDDPIAEMIRAQL  258 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChh----hccCcHHHHHhc--CCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence            34446788999999999999999999999984    567799999999  999999999999999999998877666554


Q ss_pred             H
Q 014213          129 Y  129 (429)
Q Consensus       129 y  129 (429)
                      .
T Consensus       259 ~  259 (269)
T COG2912         259 L  259 (269)
T ss_pred             H
Confidence            3

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.99  E-value=0.8  Score=41.11  Aligned_cols=77  Identities=18%  Similarity=0.144  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           48 LKEEGNKLFQKRD---HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        48 lk~~Gn~lf~~gd---yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      .++.+-.+....+   -.+.+..++..++-  .+++.+-.+.+.+|..|.++  ++|+.++.+++..|+.+|+|..|.-.
T Consensus        35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRl--keY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   35 QFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRL--KEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHH--hhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            4555666665444   56688888888872  22222234566699999999  99999999999999999999887655


Q ss_pred             HHHH
Q 014213          125 RARC  128 (429)
Q Consensus       125 rA~a  128 (429)
                      .-.+
T Consensus       111 k~~i  114 (149)
T KOG3364|consen  111 KETI  114 (149)
T ss_pred             HHHH
Confidence            4433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=90.85  E-value=5.3  Score=41.60  Aligned_cols=66  Identities=17%  Similarity=0.073  Sum_probs=42.6

Q ss_pred             HHHHHHHH---cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCCCC
Q 014213           50 EEGNKLFQ---KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-------LSEYPRAIHECNLALEVTPLY  118 (429)
Q Consensus        50 ~~Gn~lf~---~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~-------~g~y~eAi~~~~~ALeldP~~  118 (429)
                      ..|..+-+   .|+.+.|+..+..++.......+   -.++-+|..|-.+-       ....++||..|.++.+++|++
T Consensus       184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~---d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  184 QYAFALNRRNKPGDREKALQILLPVLESDENPDP---DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh---HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            34555555   78999999998886665443332   25555555553321       134778999999998888743

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=90.65  E-value=1.1  Score=39.52  Aligned_cols=66  Identities=17%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL------------YSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~------------~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      +..|..++....++.-|.|++|...|.+|+++.-.            +.-.+-.++.++..||+|++++...+++|..
T Consensus         7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y   84 (144)
T PF12968_consen    7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY   84 (144)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            34555566555555458999999999999987522            2335778899999999999999988888864

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.29  E-value=3.9  Score=37.61  Aligned_cols=86  Identities=10%  Similarity=-0.026  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      ..+..+..+-++.  ++.+++...+...--+.|.+...-.--|..+...|+|.+|+..|+.+..-.|..+.+...++.|+
T Consensus        11 ~gLie~~~~al~~--~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen   11 GGLIEVLSVALRL--GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             HHHHHHHHHHHcc--CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            3445555555666  89999988888888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcc
Q 014213          164 KELEKRGL  171 (429)
Q Consensus       164 ~~l~e~~~  171 (429)
                      ..+++...
T Consensus        89 ~~~~D~~W   96 (160)
T PF09613_consen   89 YALGDPSW   96 (160)
T ss_pred             HHcCChHH
Confidence            88876543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.24  E-value=1.6  Score=43.86  Aligned_cols=53  Identities=23%  Similarity=0.204  Sum_probs=46.7

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014213           89 MAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVT  143 (429)
Q Consensus        89 rA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~  143 (429)
                      -+.-.+..  |++.+|...+..+++.+|.+..+.+.++.||...|+.+.|...+.
T Consensus       140 ~~~~~~~~--e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~  192 (304)
T COG3118         140 EAKELIEA--EDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILA  192 (304)
T ss_pred             Hhhhhhhc--cchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHH
Confidence            45556666  999999999999999999999999999999999999988876554

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.94  E-value=2.9  Score=43.75  Aligned_cols=106  Identities=18%  Similarity=0.078  Sum_probs=86.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----C
Q 014213           59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN----R  134 (429)
Q Consensus        59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG----~  134 (429)
                      .-.++-+.+-..||+.+|+..    .+|.-|..++.+...-++..=+..|+++|++||.+.-+|..|-.++....    .
T Consensus        89 ~~ld~eL~~~~~~L~~npksY----~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~  164 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSY----GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL  164 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence            356777888889999999887    48999999998874445899999999999999999888766655554333    2


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       135 ~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      ..+-+++..+++.-++.|-.+|.....+...+-.
T Consensus       165 ~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~  198 (421)
T KOG0529|consen  165 EKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHP  198 (421)
T ss_pred             chhHHHHHHHHHhccchhhhHHHHHHHHHHHhcc
Confidence            6788999999999999999999999998887643

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.77  E-value=8.2  Score=42.10  Aligned_cols=106  Identities=26%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           48 LKEEGNKLFQKR-----DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-LSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        48 lk~~Gn~lf~~g-----dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~-~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ....|..|++..     ++..|+.+|.+|-.+...+      +.+++|.||+.-. ..++..|..+|..|...  .+..|
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~------a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A  362 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD------AQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILA  362 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch------HHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHH
Confidence            446788888743     7899999999999986544      5578999998841 13578999999888655  47899


Q ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213          122 LLKRARCYEAL----NRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus       122 l~~rA~ay~~L----G~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      .+++|.||..=    -+...|..+|.+|....  ++.+...+....
T Consensus       363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~  406 (552)
T KOG1550|consen  363 IYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY  406 (552)
T ss_pred             HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence            99999999743    37899999999999987  455555555443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=89.55  E-value=11  Score=36.73  Aligned_cols=108  Identities=23%  Similarity=0.105  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc---CCC--CHHHHHHHHHHHHHhCC
Q 014213           46 QELKEEGNKLFQ----KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM---GLS--EYPRAIHECNLALEVTP  116 (429)
Q Consensus        46 ~~lk~~Gn~lf~----~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl---~~g--~y~eAi~~~~~ALeldP  116 (429)
                      ......|..|+.    ..|+.+|+..|.+|.+..-...   +.+..+++.+|..-   .--  +...|+..+.+|-... 
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-  185 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-  185 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence            356677887777    5589999999999998744322   12356677777652   001  3347888888887776 


Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213          117 LYSKALLKRARCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAE  160 (429)
Q Consensus       117 ~~~kAl~~rA~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La  160 (429)
                       +..+.+++|.+|..    ..++.+|...|.+|-....  ..+...+.
T Consensus       186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~  230 (292)
T COG0790         186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG  230 (292)
T ss_pred             -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence             78899999988854    2378999999999998865  55555555

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.08  E-value=13  Score=39.79  Aligned_cols=98  Identities=13%  Similarity=0.105  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCccH---------------------------------------
Q 014213           43 GMSQELKEEGNKLFQKRD-HGGALLKYEKALKLLPRNHIDV---------------------------------------   82 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gd-yeeAl~~Y~kALel~P~~~~~~---------------------------------------   82 (429)
                      ..+.-+..-+..++..|. -+.|++....+++..|.+-+-.                                       
T Consensus       377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~  456 (549)
T PF07079_consen  377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT  456 (549)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence            445667777888888888 6778888888888877653200                                       


Q ss_pred             ---HHHHHHHHHH--HHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014213           83 ---SYLRSNMAAC--YMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVT  143 (429)
Q Consensus        83 ---a~l~~nrA~~--y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~  143 (429)
                         +-+-+.++.+  ++..  |+|.++.-++.=..+++| .+.+|..+|.|+....+|++|..++.
T Consensus       457 i~e~eian~LaDAEyLysq--gey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~  519 (549)
T PF07079_consen  457 ISEEEIANFLADAEYLYSQ--GEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ  519 (549)
T ss_pred             ccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence               1122233333  2333  999999999999999999 89999999999999999999998876

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=88.93  E-value=2.3  Score=34.48  Aligned_cols=70  Identities=14%  Similarity=0.196  Sum_probs=48.1

Q ss_pred             ceEEEE--ccCCccHHHHHHHHHhhCCC-CCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEEEEeeCC
Q 014213          271 DIRVAQ--LPLNSSLLQLREVISDRFPS-CRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNP  342 (429)
Q Consensus       271 DiR~~~--i~~~~~~~~L~~~v~~kf~~-~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~v~e~~~  342 (429)
                      ..+...  +|.+.++.+|.+++...|+. ....+|-|.|.+|..|..-++|+-.  +.......-.+|+|+..+|
T Consensus        11 ~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~--L~~y~~~dg~~IhVvD~~p   83 (84)
T cd01789          11 DSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDAL--LGSYPVDDGCRIHVIDVSG   83 (84)
T ss_pred             CceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccE--eeeccCCCCCEEEEEeCCC
Confidence            355555  89999999999999999953 5668888788787776644333322  2222223338999998776

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=88.79  E-value=3.4  Score=49.03  Aligned_cols=115  Identities=12%  Similarity=-0.012  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      |...-|....-|.-+.....|++|.++....     .+|..++-.|-+.  +.+++|.+.+++-+.---.-.+.|...|.
T Consensus      1500 WiA~lNlEn~yG~eesl~kVFeRAcqycd~~-----~V~~~L~~iy~k~--ek~~~A~ell~~m~KKF~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1500 WIAYLNLENAYGTEESLKKVFERACQYCDAY-----TVHLKLLGIYEKS--EKNDEADELLRLMLKKFGQTRKVWIMYAD 1572 (1710)
T ss_pred             HHHHHhHHHhhCcHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHh--hcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence            3333343334455566666777877775433     3677777778777  88888888888877776666777888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhh
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPK--NIMAAEIAERVKKELEKR  169 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~--n~~a~~~La~l~~~l~e~  169 (429)
                      .+...++-++|...+.+||+.-|.  +.......+.+....++.
T Consensus      1573 fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred             HHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            888888888888888888888886  666666666666666543

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=88.65  E-value=2.3  Score=46.26  Aligned_cols=122  Identities=16%  Similarity=0.103  Sum_probs=89.6

Q ss_pred             HHcCCH-HHHHHHHHHHHHhCCCCCccHHHHHHH-HHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213           56 FQKRDH-GGALLKYEKALKLLPRNHIDVSYLRSN-MAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN  133 (429)
Q Consensus        56 f~~gdy-eeAl~~Y~kALel~P~~~~~~a~l~~n-rA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG  133 (429)
                      +..+.. ..|+..|..-+.++|.++.   .++.+ ++..+..+  +....++-....++..+|.+..++.++|.++...|
T Consensus        41 l~~~~~~~~~~~a~~~~~~~~~~~~~---llla~~lsi~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~  115 (620)
T COG3914          41 LNAEGLQALAIYALLLGIAINDVNPE---LLLAAFLSILLAPL--ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDG  115 (620)
T ss_pred             hcccCchhHHHHHHHccCccCCCCHH---HHHHHHHHhhcccc--ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhh
Confidence            333443 4477778877888888775   21222 56677777  88889999999999999999999999999999988


Q ss_pred             CHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHHHHHhhccccc--cccccCCC
Q 014213          134 RLDLAFRDVTT-VLNKEPKNIMAAEIA------ERVKKELEKRGLRVN--DTVIELPP  182 (429)
Q Consensus       134 ~~deAl~~~~k-AL~l~P~n~~a~~~L------a~l~~~l~e~~~a~~--e~~~~L~p  182 (429)
                      ..-.++..+.. ++...|+|..+...+      +++...++..+.+..  +....+.|
T Consensus       116 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p  173 (620)
T COG3914         116 LQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLP  173 (620)
T ss_pred             hHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence            77776666665 999999999988888      666666665444433  33444543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=88.52  E-value=1.6  Score=42.02  Aligned_cols=62  Identities=13%  Similarity=-0.114  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       104 Ai~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      |+.+|.+|+.+.|.+...|..+|..+...|+.=.|+-+|-+++...-..+.+..++..+...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56788888888888888888888888888888888888888887655557777777777665

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.00  E-value=7.7  Score=39.22  Aligned_cols=91  Identities=12%  Similarity=-0.017  Sum_probs=65.5

Q ss_pred             HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 014213           66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGL----------SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRL  135 (429)
Q Consensus        66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~----------g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~  135 (429)
                      ..|++.++-+|.+..    +|..+....-.+-.          .-.+..+..+++||+.+|++...++.+=.++..+...
T Consensus         6 ~el~~~v~~~P~di~----~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~   81 (321)
T PF08424_consen    6 AELNRRVRENPHDIE----AWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS   81 (321)
T ss_pred             HHHHHHHHhCcccHH----HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence            457788888888775    55444443333200          1145677888889999998888888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213          136 DLAFRDVTTVLNKEPKNIMAAEIAE  160 (429)
Q Consensus       136 deAl~~~~kAL~l~P~n~~a~~~La  160 (429)
                      +....-+++++..+|++...|...-
T Consensus        82 ~~l~~~we~~l~~~~~~~~LW~~yL  106 (321)
T PF08424_consen   82 EKLAKKWEELLFKNPGSPELWREYL  106 (321)
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHH
Confidence            8888889999998888877665543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.81  E-value=5.4  Score=39.39  Aligned_cols=96  Identities=14%  Similarity=0.099  Sum_probs=47.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHhC--CCCHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHID--VSYLRSNMAACYMQMGLSEYPRAIHECNLA----LEVT--PLYSKAL  122 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--~a~l~~nrA~~y~kl~~g~y~eAi~~~~~A----Leld--P~~~kAl  122 (429)
                      ++.....+-++++|+..|++++.+...+..+  -.-++...+..|.++  ..|.+|-..+.+-    ++.+  |...+++
T Consensus       116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl--~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~  193 (308)
T KOG1585|consen  116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL--EKFTEAATAFLKEGVAADKCDAYNSQCKAY  193 (308)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh--HHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence            3444445555666666666665554433221  122444455555555  5555554444332    2222  2333444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      ...-.+|..+.+|..|...|+...++
T Consensus       194 va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  194 VAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHHhhHHHHHHHHHHhcchhcC
Confidence            44444445555666666666665554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=87.73  E-value=5.4  Score=39.37  Aligned_cols=100  Identities=16%  Similarity=0.135  Sum_probs=74.4

Q ss_pred             HHHcCCHHHHHHHHHHHHHhC----CCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh----CC------C--
Q 014213           55 LFQKRDHGGALLKYEKALKLL----PRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEV----TP------L--  117 (429)
Q Consensus        55 lf~~gdyeeAl~~Y~kALel~----P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALel----dP------~--  117 (429)
                      +...|+++.|..+|.++=.+.    |......+..++|.|...+..  + +|+.|+.++++|+++    ..      +  
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~--~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~   80 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSK--KDKYEEAVKWLQRAYDILEKPGKMDKLSPDGS   80 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHhhhhccccCCcHH
Confidence            467899999999999997665    333335688899999999998  8 999999999999988    21      1  


Q ss_pred             --CHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCCCHHHH
Q 014213          118 --YSKALLKRARCYEALNRLDL---AFRDVTTVLNKEPKNIMAA  156 (429)
Q Consensus       118 --~~kAl~~rA~ay~~LG~~de---Al~~~~kAL~l~P~n~~a~  156 (429)
                        ....+..++.+|...+.++.   |+..++.+-.-.|+.+...
T Consensus        81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence              23467888999998887654   4444444445567766665

It is also involved in sporulation [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.26  E-value=9.1  Score=36.46  Aligned_cols=127  Identities=17%  Similarity=0.144  Sum_probs=85.1

Q ss_pred             HHHHHHHcCCHH---HHHHHHHHHHHhCCCCCcc-----------------HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 014213           51 EGNKLFQKRDHG---GALLKYEKALKLLPRNHID-----------------VSYLRSNMAACYMQMGLSEYPRAIHECNL  110 (429)
Q Consensus        51 ~Gn~lf~~gdye---eAl~~Y~kALel~P~~~~~-----------------~a~l~~nrA~~y~kl~~g~y~eAi~~~~~  110 (429)
                      .|=.|++..+-+   +|-..|++++.......+.                 -......+|..+...  +++++|+..++.
T Consensus        37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~--~~~d~A~aqL~~  114 (207)
T COG2976          37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEA--NNLDKAEAQLKQ  114 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhh--ccHHHHHHHHHH
Confidence            345555555444   6777788877765222111                 122335567778888  999999999999


Q ss_pred             HHHhCCC-CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhhccccccccccCC
Q 014213          111 ALEVTPL-YSK--ALLKRARCYEALNRLDLAFRDVTTVLNKEPK-NIMAAEIAERVKKELEKRGLRVNDTVIELP  181 (429)
Q Consensus       111 ALeldP~-~~k--Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~-n~~a~~~La~l~~~l~e~~~a~~e~~~~L~  181 (429)
                      ++....+ +.+  +-+|+|.++..+|.+++|+..++....  ++ .+......+.++-.++++..+...+...|.
T Consensus       115 ~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~  187 (207)
T COG2976         115 ALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALE  187 (207)
T ss_pred             HHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHH
Confidence            9865543 233  568899999999999999988764332  11 223456677788888888777776666664

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.20  E-value=3.1  Score=45.79  Aligned_cols=74  Identities=20%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTP------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE  157 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~  157 (429)
                      .++.|-|.-++++  .+|..+++.|...+..-|      ++.+....++.||..+.++|.|++++..|-+.+|.++-...
T Consensus       355 ~iLWn~A~~~F~~--~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~  432 (872)
T KOG4814|consen  355 TLLWNTAKKLFKM--EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL  432 (872)
T ss_pred             HHHHHhhHHHHHH--HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            4667788899999  999999999999987654      46778888999999999999999999999999998875444


Q ss_pred             HH
Q 014213          158 IA  159 (429)
Q Consensus       158 ~L  159 (429)
                      .+
T Consensus       433 ~~  434 (872)
T KOG4814|consen  433 LM  434 (872)
T ss_pred             HH
Confidence            33

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.03  E-value=0.99  Score=31.45  Aligned_cols=29  Identities=10%  Similarity=-0.009  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      ..|..+|.+-...++|+.|+.+|+++|.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            35778888888888899999998888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=86.53  E-value=1.4  Score=47.41  Aligned_cols=76  Identities=24%  Similarity=0.124  Sum_probs=67.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213           99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALN---RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG---~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +.+..||..|.++++..|+....|-++|.+|...+   +.-.|+.++..|+.++|....++..++++...+.....+..
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~  466 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS  466 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence            45788999999999999999999999999988754   67789999999999999999999999999999988777665

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.93  E-value=15  Score=40.16  Aligned_cols=110  Identities=16%  Similarity=0.054  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHH-------hCCCCCccHHHHHHHHHHHHHHcC--CC-CHHHHHHHHH
Q 014213           45 SQELKEEGNKLFQ-----KRDHGGALLKYEKALK-------LLPRNHIDVSYLRSNMAACYMQMG--LS-EYPRAIHECN  109 (429)
Q Consensus        45 A~~lk~~Gn~lf~-----~gdyeeAl~~Y~kALe-------l~P~~~~~~a~l~~nrA~~y~kl~--~g-~y~eAi~~~~  109 (429)
                      +......|..++.     .+|.+.|+.+|..|.+       ..  ++    .+.+.+|.||++-.  .. ++..|+..+.
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~----~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~  317 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LP----PAQYGLGRLYLQGLGVEKIDYEKALKLYT  317 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CC----ccccHHHHHHhcCCCCccccHHHHHHHHH
Confidence            3334455665554     3789999999999987       22  22    26678999999831  13 6788999998


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          110 LALEVTPLYSKALLKRARCYEALN---RLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       110 ~ALeldP~~~kAl~~rA~ay~~LG---~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      +|-.+.  ++.+.+.+|.+|..-.   ++..|..+|..|...  .+..+...++.++.
T Consensus       318 ~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~  371 (552)
T KOG1550|consen  318 KAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE  371 (552)
T ss_pred             HHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence            887665  6788899999998766   578999999988875  67788888888765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=85.88  E-value=10  Score=45.36  Aligned_cols=113  Identities=16%  Similarity=-0.045  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCCcc---HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKL-LPRNHID---VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY  118 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel-~P~~~~~---~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~  118 (429)
                      .-+..|.+-=.-+++.++.+.|-..+++||.. +++..++   ++.+|.|+=.+|     |.-+.....|++|.+.. +-
T Consensus      1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y-----G~eesl~kVFeRAcqyc-d~ 1529 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY-----GTEESLKKVFERACQYC-DA 1529 (1710)
T ss_pred             CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh-----CcHHHHHHHHHHHHHhc-ch
Confidence            44556777777788889999999999999885 4544432   456666666665     55566677777777765 34


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213          119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus       119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      ...|..+..+|..-+++++|.+.|+..++---.....|..++.
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYAD 1572 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHH
Confidence            6778889999999999999999998888765444445544443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=85.87  E-value=3.5  Score=41.20  Aligned_cols=64  Identities=16%  Similarity=0.169  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      ..++..++..+...  ++++.++..+++.+..+|-+-.+|.++=.+|+..|+...|+..|++.-.+
T Consensus       153 ~~~l~~lae~~~~~--~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIAC--GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhc--ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            35667778888887  88888889999999999988888888888999999988888888766553

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=85.81  E-value=3  Score=40.24  Aligned_cols=62  Identities=23%  Similarity=0.172  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213           64 ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEA  131 (429)
Q Consensus        64 Al~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~  131 (429)
                      |..+|.+|+.+.|.+..    .|+.+|..+...  ++.-.|+-.|-+++-..--+..|.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~----p~nQLAvl~~~~--~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGN----PYNQLAVLASYQ--GDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSH----HHHHHHHHHHHT--T-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCC----cccchhhhhccc--cchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999985    999999999998  999999999999998776678888888888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=85.51  E-value=4.1  Score=36.62  Aligned_cols=55  Identities=16%  Similarity=0.152  Sum_probs=44.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccc
Q 014213          118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a  172 (429)
                      -....+.+|......|+|..|+..++.++..+|+|..++...+.++..++.....
T Consensus        69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~  123 (141)
T PF14863_consen   69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN  123 (141)
T ss_dssp             CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence            3466788889999999999999999999999999999999999999999765543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.28  E-value=24  Score=37.19  Aligned_cols=114  Identities=14%  Similarity=0.057  Sum_probs=84.7

Q ss_pred             HHHHHHcCCH-HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC----------CCCHHHHHHHHHHHHHhCCCCHH
Q 014213           52 GNKLFQKRDH-GGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG----------LSEYPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        52 Gn~lf~~gdy-eeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~----------~g~y~eAi~~~~~ALeldP~~~k  120 (429)
                      =...-..|.| .+++..=.+.+..+|...    ++|+.+-.++....          ..-+++-+.....+|..+|+...
T Consensus        35 i~~~r~~~~yd~e~l~lt~~ll~~npe~~----t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~  110 (421)
T KOG0529|consen   35 IQKKREAKEYDEEHLELTSELLEKNPEFY----TVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG  110 (421)
T ss_pred             HHHHHhccccchHHHHHHHHHHhhCchhh----hhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH
Confidence            3344455666 567777777888888655    36666555554320          02345566777889999999999


Q ss_pred             HHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213          121 ALLKRARCYEALNR--LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus       121 Al~~rA~ay~~LG~--~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                      +|+.|..++...+.  +..-++.++++|+.+|.|-.+|....-+.......
T Consensus       111 aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen  111 AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            99999999998874  68889999999999999999998888877666543

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=85.01  E-value=8.2  Score=39.91  Aligned_cols=101  Identities=17%  Similarity=0.042  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-C----CHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP-L----YSKA  121 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP-~----~~kA  121 (429)
                      .+..-...+.++|-|..|++...-.+.++|.+.+    +...+..-|+.++.++|+=-+..++....... .    .+..
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP----~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~  180 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP----LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF  180 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc----chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH
Confidence            4556667788999999999999999999998432    33333344444445899888888887665322 1    3357


Q ss_pred             HHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 014213          122 LLKRARCYEALNRL---------------DLAFRDVTTVLNKEPK  151 (429)
Q Consensus       122 l~~rA~ay~~LG~~---------------deAl~~~~kAL~l~P~  151 (429)
                      -|.+|.|+..+++-               +.|-..+.+|+..-|.
T Consensus       181 a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  181 AFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            78899999999998               8999999999998774

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=84.87  E-value=3  Score=28.63  Aligned_cols=33  Identities=15%  Similarity=0.024  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 014213          120 KALLKRARCYEALNRLDLAFRD--VTTVLNKEPKN  152 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~--~~kAL~l~P~n  152 (429)
                      +.++.+|..+...|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566667777777777777777  43666666543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.81  E-value=24  Score=33.38  Aligned_cols=115  Identities=11%  Similarity=0.014  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHhCCCCHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA-LEVTPLYSKALLKR  125 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~A-LeldP~~~kAl~~r  125 (429)
                      .....|..+.++|+-..|+..|+++-.-.|--..-+-.++..-+..++.-  |.|+....-.+-. -.-+|-...|--.+
T Consensus        96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~--gsy~dV~srvepLa~d~n~mR~sArEAL  173 (221)
T COG4649          96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN--GSYDDVSSRVEPLAGDGNPMRHSAREAL  173 (221)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc--ccHHHHHHHhhhccCCCChhHHHHHHHH
Confidence            35567888899999999999999987765533222223444445555555  8898866544321 12334445566667


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      |.+-+.-|+|..|...|..... +.+.+......+.+..
T Consensus       174 glAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml  211 (221)
T COG4649         174 GLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML  211 (221)
T ss_pred             hHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence            8888999999999999997776 4445554445444443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.65  E-value=15  Score=39.48  Aligned_cols=98  Identities=19%  Similarity=0.103  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCCCC-----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL-EVTPLY-----  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL-eldP~~-----  118 (429)
                      +......|.....-+.|+.|...|..|+++..... ..+.+-.|+|..|++.  ++-+    ++-+++ .+.|.+     
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~d-l~a~~nlnlAi~YL~~--~~~e----d~y~~ld~i~p~nt~s~s  439 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESID-LQAFCNLNLAISYLRI--GDAE----DLYKALDLIGPLNTNSLS  439 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHH-HHHHHHHhHHHHHHHh--ccHH----HHHHHHHhcCCCCCCcch
Confidence            44556778888889999999999999999876433 3677889999999987  5433    233333 355553     


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213          119 -----SKALLKRARCYEALNRLDLAFRDVTTVLNKE  149 (429)
Q Consensus       119 -----~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~  149 (429)
                           ..++|-.|.-.+..+++.||...+.+.|++.
T Consensus       440 sq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  440 SQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence                 2368888998899999999999999999986

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=84.49  E-value=19  Score=40.05  Aligned_cols=143  Identities=15%  Similarity=0.006  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP----------  116 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP----------  116 (429)
                      -|...|..|-..|+.+.|-..|++|+...=...++++.+|++-|..-++-  .+++.|+...++|+.+--          
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh--~~~~~Al~lm~~A~~vP~~~~~~~yd~~  466 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH--ENFEAALKLMRRATHVPTNPELEYYDNS  466 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh--hhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence            36778888899999999999999999876666667888999888776666  899999998888875521          


Q ss_pred             --------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCC
Q 014213          117 --------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPPEYVE  186 (429)
Q Consensus       117 --------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p~~~~  186 (429)
                              +..+.|...+.....+|-++.-...|++.+.|-=..|....+.+..+..-..-..+..  ++.+.|-   .-
T Consensus       467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF---k~  543 (835)
T KOG2047|consen  467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF---KW  543 (835)
T ss_pred             CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC---CC
Confidence                    2345667777778888888888888999998887788777777766554433333333  4455553   33


Q ss_pred             CCcccccc
Q 014213          187 PPVTSIAP  194 (429)
Q Consensus       187 P~~~~~~a  194 (429)
                      |.--..|.
T Consensus       544 p~v~diW~  551 (835)
T KOG2047|consen  544 PNVYDIWN  551 (835)
T ss_pred             ccHHHHHH
Confidence            44444554

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=84.28  E-value=31  Score=36.16  Aligned_cols=116  Identities=15%  Similarity=0.052  Sum_probs=74.1

Q ss_pred             CCCCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCC------
Q 014213           28 EHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLS------   99 (429)
Q Consensus        28 ~~~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g------   99 (429)
                      .+....+..+..+     ..++..|+.+|-.|||+-|+..|+-+..-.-++..  ..+.++-..|.|++.++..      
T Consensus       196 ~~~~~~Y~~~S~E-----~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~  270 (414)
T PF12739_consen  196 NPSQNYYSADSPE-----AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIR  270 (414)
T ss_pred             CcccCccCCCChH-----HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccc
Confidence            3444555556555     56889999999999999999999998885544332  2345556666676666211      


Q ss_pred             --C----HHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          100 --E----YPRAIHECNLA----LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       100 --~----y~eAi~~~~~A----LeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                        .    ++.|...|..+    .....--.++.+..+.++..++.+.+|...+-+....
T Consensus       271 ~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~  329 (414)
T PF12739_consen  271 KDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE  329 (414)
T ss_pred             cccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence              1    23333344432    1111233556777788888999988887777666654

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=84.01  E-value=8.9  Score=39.62  Aligned_cols=78  Identities=15%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             HHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh--------------CC---------------CCHHHH
Q 014213           72 LKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV--------------TP---------------LYSKAL  122 (429)
Q Consensus        72 Lel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel--------------dP---------------~~~kAl  122 (429)
                      |...|.+.+    .+..++..+.+.  |++..|...+++||=.              ++               .+..|+
T Consensus        33 l~~~PyHid----tLlqls~v~~~~--gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal  106 (360)
T PF04910_consen   33 LQKNPYHID----TLLQLSEVYRQQ--GDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLAL  106 (360)
T ss_pred             HHHCCCcHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHH
Confidence            455676664    677788888888  9999998888888621              11               124478


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPK-NIMA  155 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~-n~~a  155 (429)
                      ++....+...|.+.-|++.++-.++++|. ++-.
T Consensus       107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g  140 (360)
T PF04910_consen  107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLG  140 (360)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcch
Confidence            88999999999999999999999999998 6643

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=83.92  E-value=6.9  Score=38.07  Aligned_cols=109  Identities=19%  Similarity=0.054  Sum_probs=62.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCCcc----H----HHHHHHHHHHHHHcCCCC-HHHHH-HHHHHHHH-hC-CCCHHHHH
Q 014213           56 FQKRDHGGALLKYEKALKLLPRNHID----V----SYLRSNMAACYMQMGLSE-YPRAI-HECNLALE-VT-PLYSKALL  123 (429)
Q Consensus        56 f~~gdyeeAl~~Y~kALel~P~~~~~----~----a~l~~nrA~~y~kl~~g~-y~eAi-~~~~~ALe-ld-P~~~kAl~  123 (429)
                      |.-|+|+.|+....-||+..-.-++.    .    +--...-+......  |. ++-.. ..+..... .+ |+-+.|-+
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~a--g~~~e~~~~~~~~~l~~~~dmpd~vrAKl  171 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASA--GESVEPYFLRVFLDLTTEWDMPDEVRAKL  171 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHc--CCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence            46788999999999999987443321    1    11112222223333  33 11111 11111111 11 56566655


Q ss_pred             HH--HHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          124 KR--ARCYE---------ALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       124 ~r--A~ay~---------~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      .+  |..+.         ..+++..|+..+++|+.++|+ ..+...+.++...+.
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr  225 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK  225 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence            54  44442         345788999999999999975 456666777777664

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=83.79  E-value=12  Score=34.24  Aligned_cols=81  Identities=9%  Similarity=-0.051  Sum_probs=69.5

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213           88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus        88 nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      ....+-+..  .+..++.......--+-|+....-.--|..+...|+|.+|+..|+....-.|..+-+...++.|...++
T Consensus        15 ~~~~~aL~~--~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        15 EVLMYALRS--ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHhc--CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            333444445  888888888887778899999999999999999999999999999999999999999999999999997


Q ss_pred             hhc
Q 014213          168 KRG  170 (429)
Q Consensus       168 e~~  170 (429)
                      +..
T Consensus        93 Dp~   95 (153)
T TIGR02561        93 DAE   95 (153)
T ss_pred             ChH
Confidence            644

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=83.41  E-value=2.3  Score=43.24  Aligned_cols=90  Identities=11%  Similarity=-0.018  Sum_probs=70.2

Q ss_pred             HHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 014213           67 KYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK-RARCYEALNRLDLAFRDVTTV  145 (429)
Q Consensus        67 ~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~-rA~ay~~LG~~deAl~~~~kA  145 (429)
                      .|.++-...|+++.    +|...++...+.  +.|.+.-..|.+++...|.++..|.. -+.-|...++++.+...|.++
T Consensus        95 ~~~R~tnkff~D~k----~w~~y~~Y~~k~--k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~g  168 (435)
T COG5191          95 ELYRSTNKFFNDPK----IWSQYAAYVIKK--KMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKG  168 (435)
T ss_pred             eeehhhhcCCCCcH----HHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhh
Confidence            34444455566663    666555444444  88999999999999999999998877 566788899999999999999


Q ss_pred             HHhCCCCHHHHHHHHHH
Q 014213          146 LNKEPKNIMAAEIAERV  162 (429)
Q Consensus       146 L~l~P~n~~a~~~La~l  162 (429)
                      |.++|.++..|...-+.
T Consensus       169 lR~N~~~p~iw~eyfr~  185 (435)
T COG5191         169 LRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             hccCCCCchHHHHHHHH
Confidence            99999999887765553

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.28  E-value=1.5  Score=27.50  Aligned_cols=24  Identities=33%  Similarity=0.146  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 014213          120 KALLKRARCYEALNRLDLAFRDVT  143 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~  143 (429)
                      .+++.+|.+|..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355666666666777666666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.63  E-value=3.4  Score=31.95  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=29.6

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL   75 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~   75 (429)
                      ++.|..+...|..+=+.|+|++|+.+|.+|++..
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l   35 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYL   35 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            5678888899999999999999999999988864

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=82.45  E-value=8.5  Score=41.38  Aligned_cols=98  Identities=16%  Similarity=0.139  Sum_probs=78.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 014213           53 NKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEAL  132 (429)
Q Consensus        53 n~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~L  132 (429)
                      ...+..||.-.|-.....+|+-.|.++.    .-..++..+..+  |+|+.|.++..-+-.+-..-.+++.-+-..+..+
T Consensus       297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~----~i~l~~~i~~~l--g~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l  370 (831)
T PRK15180        297 TKQLADGDIIAASQQLFAALRNQQQDPV----LIQLRSVIFSHL--GYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL  370 (831)
T ss_pred             HHHhhccCHHHHHHHHHHHHHhCCCCch----hhHHHHHHHHHh--hhHHHHHHHhhchhhhhcCCchHHHHHHHhhhch
Confidence            4456789999999999999999999885    445567788888  9999999988777666566667777788889999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH
Q 014213          133 NRLDLAFRDVTTVLNKEPKNIMAA  156 (429)
Q Consensus       133 G~~deAl~~~~kAL~l~P~n~~a~  156 (429)
                      |++++|+......|.-+-.++++.
T Consensus       371 ~r~~~a~s~a~~~l~~eie~~ei~  394 (831)
T PRK15180        371 ARWREALSTAEMMLSNEIEDEEVL  394 (831)
T ss_pred             hhHHHHHHHHHHHhccccCChhhe
Confidence            999999998888887655555543

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.93  E-value=3.4  Score=32.73  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=30.2

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL   75 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~   75 (429)
                      ++..|..+...|...=..|+|++|+.+|..|++..
T Consensus         2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l   36 (75)
T cd02678           2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYF   36 (75)
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            56788889999999999999999999999888764

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=81.88  E-value=0.44  Score=45.57  Aligned_cols=58  Identities=24%  Similarity=0.344  Sum_probs=0.0

Q ss_pred             CceeEEEEeCC-ce-EEEEccCCccHHHHHHHHHhhC---CC------------------CCceEEEEECCCCCEEEecC
Q 014213          260 PKKTVKLVFGE-DI-RVAQLPLNSSLLQLREVISDRF---PS------------------CRAVLIKYRDEEGDLVTITT  316 (429)
Q Consensus       260 ~~~~vK~~~~~-Di-R~~~i~~~~~~~~L~~~v~~kf---~~------------------~~~~~iky~DedgDliti~~  316 (429)
                      ....|||+... .| |.|=|..--+|.+|...+.+-|   ..                  ...+.|-|.|.||||..++|
T Consensus       108 ~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L~~MF~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~Y~D~egd~mlvGD  187 (215)
T PF02309_consen  108 SRSYVKVNMDGVPIGRKVDLSAYSSYEELSSALEKMFSCFSIEQCGSHGLNESGLLDLLNGSEYVLVYEDKEGDWMLVGD  187 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceeEEEecCcccceecCHHHhhCHHHHHHHHHHhcCCCCccccccccccchhhccccCCcceeEEEECCCCCEEEecC
Confidence            35778888755 54 4444666789999999999999   21                  12478999999999999998


Q ss_pred             h
Q 014213          317 D  317 (429)
Q Consensus       317 ~  317 (429)
                      .
T Consensus       188 ~  188 (215)
T PF02309_consen  188 V  188 (215)
T ss_dssp             -
T ss_pred             C
Confidence            6

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=81.78  E-value=4.2  Score=47.92  Aligned_cols=128  Identities=17%  Similarity=0.149  Sum_probs=96.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR----NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT---  115 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~----~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld---  115 (429)
                      ..+....+.|......+.+.+|.+ ..+++.+..+    -+.+.+.+|..++..|.++  +++++|+..+.+|.-+.   
T Consensus       930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~--~d~~~Ai~~~~ka~ii~eR~ 1006 (1236)
T KOG1839|consen  930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL--GDNQEAIAQQRKACIISERV 1006 (1236)
T ss_pred             chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh--cchHHHHHhcccceeeechh
Confidence            556778889999999999998888 6666665542    1224567899999999999  99999999999887553   


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhhcccc
Q 014213          116 -----PLYSKALLKRARCYEALNRLDLAFRDVTTVLNK--------EPKNIMAAEIAERVKKELEKRGLRV  173 (429)
Q Consensus       116 -----P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l--------~P~n~~a~~~La~l~~~l~e~~~a~  173 (429)
                           |+...+|.+++...........|+..+.+++.+        .|.-.....+++.+...+++...++
T Consensus      1007 ~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al 1077 (1236)
T KOG1839|consen 1007 LGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTAL 1077 (1236)
T ss_pred             ccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHH
Confidence                 556778999999889999999999999988876        3544445455666655555444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.75  E-value=5.3  Score=28.69  Aligned_cols=25  Identities=28%  Similarity=0.328  Sum_probs=19.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLN  147 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~  147 (429)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677888888888888888888774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=80.18  E-value=9.9  Score=40.01  Aligned_cols=99  Identities=15%  Similarity=0.096  Sum_probs=59.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRN-----HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~-----~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      -.-..+.-.|||..|+...+. |+++...     +.-..++++..|.|||.|  ++|.+|+..+...|-.--+....+..
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMl--rRY~DAir~f~~iL~yi~r~k~~~~~  203 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLML--RRYADAIRTFSQILLYIQRTKNQYHQ  203 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            344566678999999987654 3333221     111235778899999999  99999999999887533222222333


Q ss_pred             HHHHHHHcC-CHHHHHHHHHHHHHhCCC
Q 014213          125 RARCYEALN-RLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       125 rA~ay~~LG-~~deAl~~~~kAL~l~P~  151 (429)
                      +..-|-.+. ..+.....+--++.+.|.
T Consensus       204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  204 RSYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            333333322 334455555556677774

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=80.08  E-value=2.6  Score=44.22  Aligned_cols=60  Identities=15%  Similarity=0.119  Sum_probs=45.8

Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHH-------H-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213           87 SNMAACYMQMGLSEYPRAIHECNLA-------L-EVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus        87 ~nrA~~y~kl~~g~y~eAi~~~~~A-------L-eldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      ..+...|.-+  |+|..|+...+-.       + .+-+.++..+|..|.||..+++|.+|++.|...|..
T Consensus       126 igLlRvh~LL--GDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  126 IGLLRVHCLL--GDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHhc--cCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666  9999999876532       1 123457788999999999999999999999988753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	429
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		2e-07
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		4e-05
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		6e-05
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		6e-05
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		2e-04
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		5e-04
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		5e-04

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 46  QELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
           ++L++EGN+LF+  D+GG                 D + L  N AAC+++  L +Y +A 
Sbjct: 29  EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-DQAVLHRNRAACHLK--LEDYDKAE 85
Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
            E + A+E      KAL +R++  E L RLD A  D+   ++ EPKN
Sbjct: 86  TEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 44  MSQELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPR 103
           ++QE K +GN+ F+K D+              P N I    L SN AAC  +  L E+ R
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI----LYSNRAACLTK--LMEFQR 65
Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE 157
           A+ +C+  + +   + K  +++A C  A+     A R     L  +P N  A E
Sbjct: 66  ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 47  ELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106
           +LK  GN  F  ++               P   +      SN++ACY+  G  +  + I 
Sbjct: 23  QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV----FYSNISACYISTG--DLEKVIE 76
Query: 107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV-LNKEPKNIMAAEIAERVKKE 165
               ALE+ P +SKALL+RA   E+L     A  D++ + LN +      A I   +++ 
Sbjct: 77  FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD---FDGASIEPMLERN 133
Query: 166 LEKRGLRV 173
           L K+ ++V
Sbjct: 134 LNKQAMKV 141

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 47  ELKEEGNKLFQKRDHGGXXXXXXXXXXXXPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106
           +LK  GN  F  ++               P   +      SN++ACY+  G  +  + I 
Sbjct: 27  QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV----FYSNISACYISTG--DLEKVIE 80
Query: 107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV-LNKEPKNIMAAEIAERVKKE 165
               ALE+ P +SKALL+RA   E+L     A  D++ + LN +      A I   +++ 
Sbjct: 81  FTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGD---FDGASIEPMLERN 137
Query: 166 LEKRGLRV 173
           L K+ ++V
Sbjct: 138 LNKQAMKV 145

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 88  NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
           N+A C+++  L  +  AI  CN ALE+     K L +R   + A+N  +LA  D   VL 
Sbjct: 201 NLAMCHLK--LQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQ 258
Query: 148 KEPKNIMA----AEIAERVKKEL 166
             P N  A    A   +R++++L
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQL 281

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 88  NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
           N+ AC ++M  S++  A+  C  ALE+ P  +KAL +RA+ ++ L   D A  D+     
Sbjct: 278 NIGACKLKM--SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335
Query: 148 KEPKN 152
             P++
Sbjct: 336 IAPED 340

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 88  NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
           N+A C+++  L  +  AI  CN ALE+     K L +R   + A+N  +LA  D   VL 
Sbjct: 201 NLAMCHLK--LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 258
Query: 148 KEPKNIMA----AEIAERVKKEL 166
             P N  A    A   +R++++L
Sbjct: 259 LYPNNKAAKTQLAVCQQRIRRQL 281

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	429
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-36
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-28
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-28
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-26
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-26
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	8e-26
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-24
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-23
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-22
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	7e-21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-20
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-19
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-17
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	9e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-16
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	4e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	7e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	7e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	6e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-08
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-07
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	5e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	9e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-05
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	2e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	2e-06
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	5e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	8e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-06
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	4e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	8e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-05
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	2e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	8e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	9e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-04
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-04
1pqs_A	77	Cell division control protein 24; alpha and beta p	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	5e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-04

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  129 bits (326), Expect = 3e-36
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 18  GGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR 77
           G S               +         ++L++EGN+LF+  D+GGAL  Y +AL L   
Sbjct: 1   GSSGSSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT 60

Query: 78  NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDL 137
              D + L  N AAC++++   +Y +A  E + A+E      KAL +R++  E L RLD 
Sbjct: 61  PQ-DQAVLHRNRAACHLKLE--DYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQ 117

Query: 138 AFRDVTTVLNKEPKNIMAAEIAERVKKEL 166
           A  D+   ++ EPKN +  E    +    
Sbjct: 118 AVLDLQRCVSLEPKNKVFQEALRNISGPS 146

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  108 bits (272), Expect = 1e-28
 Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 6/133 (4%)

Query: 32  KSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA 91
             +   + +   ++  +K +GN+ FQK D+  A+  Y +A+K  P++      L SN AA
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK----LYSNRAA 58

Query: 92  CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151
           CY ++   E+  A+ +C   +++ P + K   ++A   EA+     A       L+ +  
Sbjct: 59  CYTKLL--EFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS 116

Query: 152 NIMAAEIAERVKK 164
              AA+  +R   
Sbjct: 117 CKEAADGYQRCMM 129

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  108 bits (271), Expect = 1e-28
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 44  MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPR 103
           ++QE K +GN+ F+K D+  A+  Y +A+K  P N I    L SN AAC  ++   E+ R
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI----LYSNRAACLTKLM--EFQR 65

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
           A+ +C+  + +   + K  +++A C  A+     A R     L  +P N  A E      
Sbjct: 66  ALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

Query: 164 K 164
           +
Sbjct: 126 R 126

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  108 bits (273), Expect = 2e-28
 Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           ++ELK + N  F+ +D+  A+  Y +A++L P N I       N +  Y++     Y  A
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI----YYGNRSLAYLRTE--CYGYA 66

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164
           + +   A+E+   Y K   +RA    AL +   A RD  TV+  +P +  A    +   K
Sbjct: 67  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126

Query: 165 ELEKRG 170
            ++++ 
Sbjct: 127 IVKQKA 132

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  105 bits (263), Expect = 2e-27
 Identities = 32/128 (25%), Positives = 57/128 (44%), Gaps = 9/128 (7%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           ++E + EG + F K D   A+  Y + +K  P +        SN AA   ++    +P A
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR----GYSNRAAALAKLM--SFPEA 57

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAAEIAER 161
           I +CN A+E  P + +A +++A    A+     A   +     K+ +      A EI + 
Sbjct: 58  IADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 117

Query: 162 VKKELEKR 169
             K  ++R
Sbjct: 118 YYKASQQR 125

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  104 bits (261), Expect = 3e-27
 Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 44  MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPR 103
              ELKE+GNK     +   AL  Y +A+KL P NH+    L SN +A Y + G  +Y +
Sbjct: 3   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV----LYSNRSAAYAKKG--DYQK 56

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
           A  +    +++ P + K   ++A   E LNR + A R     L  E  N    E  + ++
Sbjct: 57  AYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116

Query: 164 K 164
            
Sbjct: 117 A 117

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  103 bits (258), Expect = 1e-26
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 8/127 (6%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           +QELKE+GN+LF  R +  A   Y +A+   P   +      +N A CY++M   +  +A
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV----YYTNRALCYLKMQ--QPEQA 62

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN--IMAAEIAERV 162
           + +C  ALE+     KA     +C   +   D A  ++    +   +       +I   +
Sbjct: 63  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 122

Query: 163 KKELEKR 169
           +   +KR
Sbjct: 123 RIAKKKR 129

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  105 bits (262), Expect = 7e-26
 Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 14/227 (6%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           +QELKE+GN+LF  R +  A   Y +A+   P   +      +N A CY++  + +  +A
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV----YYTNRALCYLK--MQQPEQA 57

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN--IMAAEIAERV 162
           + +C  ALE+     KA     +C   +   D A  ++    +   +       +I   +
Sbjct: 58  LADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117

Query: 163 KKELEKRGLRVNDTVIELPPE---YVEPPVTSIAPKVVKEKTKKKKKSNKVEQKKTGVKV 219
           +   +KR   + +  I    E   Y+   + +   + ++E  +  +        +     
Sbjct: 118 RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC 177

Query: 220 EEKEVDEKIED-KRVDGRIEEKMAEDKV--VVEEKISSTEDNEPKKT 263
            E + D+ + D   +  +++EK  +  +   +  KIS     EP  T
Sbjct: 178 IEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCIT 224

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  101 bits (254), Expect = 8e-26
 Identities = 38/166 (22%), Positives = 60/166 (36%), Gaps = 13/166 (7%)

Query: 31  PKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMA 90
           P+S     E     S +LK EGN    ++++  A+  Y +AL + P N I      SN A
Sbjct: 2   PRSMAPTPE-----SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI----YLSNRA 52

Query: 91  ACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP 150
           A Y   G  ++ +A  +  LA  V P YSKA  +       +     A       +  E 
Sbjct: 53  AAYSASG--QHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110

Query: 151 KNIMAA--EIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAP 194
                A     E  K+++E+          ++             P
Sbjct: 111 NGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGASRGAGGMP 156

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 99.2 bits (248), Expect = 2e-25
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 6/124 (4%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           ++ LK EGN+  +  +   A+  Y KA++L P N +       N AA Y ++G   Y  A
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV----YFCNRAAAYSKLG--NYAGA 65

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164
           + +C  A+ + P YSKA  +      +LN+   A       L  +P N       +  + 
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 165 ELEK 168
           +L +
Sbjct: 126 KLRE 129

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 97.1 bits (242), Expect = 4e-24
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 16/142 (11%)

Query: 42  IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSY--------------LRS 87
           +   + L+++GN+LF ++D+  A+  Y  AL  L    +                  L +
Sbjct: 8   LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYA 67

Query: 88  NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
           NM+ CY+ +G  +   A    +  L+      KAL +RA+   A  +LD A  D+  +L 
Sbjct: 68  NMSQCYLNIG--DLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125

Query: 148 KEPKNIMAAEIAERVKKELEKR 169
             P          ++  E    
Sbjct: 126 NHPAAASVVAREMKIVTERRAE 147

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 96.8 bits (241), Expect = 1e-23
 Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 14/149 (9%)

Query: 33  SYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSY-------- 84
            YD   E  +  + ++KEEGN+ F+K +   A++KY++AL                    
Sbjct: 26  IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 85

Query: 85  ----LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFR 140
                  N+A CY +    +YP+AI   +  L++     KAL K          L+ A  
Sbjct: 86  IEISCNLNLATCYNKNK--DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143

Query: 141 DVTTVLNKEPKNIMAAEIAERVKKELEKR 169
           ++    +  P N+      E    +L++ 
Sbjct: 144 NLYKAASLNPNNLDIRNSYELCVNKLKEA 172

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 90.8 bits (226), Expect = 3e-22
 Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 15/132 (11%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
            + KE GN  ++K+D   AL  Y+KA +L P N        +N AA Y + G  +Y +  
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT----YITNQAAVYFEKG--DYNKCR 58

Query: 106 HECNLALEVTP-------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEI 158
             C  A+EV           +KA  +    Y    +   A       L +     +  + 
Sbjct: 59  ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118

Query: 159 --AERVKKELEK 168
             AE++ KE E+
Sbjct: 119 QQAEKILKEQER 130

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 95.7 bits (238), Expect = 3e-22
 Identities = 47/240 (19%), Positives = 87/240 (36%), Gaps = 48/240 (20%)

Query: 31  PKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--------- 81
            +S++ ++E  +  S  +KE G   F++  +  ALL+Y+K +  L               
Sbjct: 133 KESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQ 192

Query: 82  --VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAF 139
                   N+A C++++    +  AI  CN ALE+     K L +R   + A+N  +LA 
Sbjct: 193 ALRLASHLNLAMCHLKLQ--AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR 250

Query: 140 RDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKE 199
            D   VL   P N       +  K +L                               ++
Sbjct: 251 ADFQKVLQLYPNN-------KAAKTQLAV----------------------------CQQ 275

Query: 200 KTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRIEEKMAEDKVVVEEKISSTEDNE 259
           + +++    K        ++ E+E   K E    D   + +M E++        S  + E
Sbjct: 276 RIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQSQVETE 335

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 86.2 bits (214), Expect = 7e-21
 Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 12/114 (10%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
            ++ KE+GN LF++  +  A+  Y++ +   P+N +      SN A   +++G  EY +A
Sbjct: 4   FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV----GYSNKAMALIKLG--EYTQA 57

Query: 105 IHECNLALEVTPLYSKALLKRA------RCYEALNRLDLAFRDVTTVLNKEPKN 152
           I  C   L  T       ++            A+  + +   +V  +     ++
Sbjct: 58  IQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYDRS 111

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 93.2 bits (232), Expect = 1e-20
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 14/188 (7%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           ++ELK + N  F+ +D+  A+  Y +A++L P N I       N +  Y++     Y  A
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI----YYGNRSLAYLR--TECYGYA 59

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164
           + +   A+E+   Y K   +RA    AL +   A RD  TV+  +P +  A    +   K
Sbjct: 60  LGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119

Query: 165 ELEKRGLRVNDTVIELPPEYVE-PPVTSIA-------PKVVKEKTKKKKKSNKVEQKKTG 216
            ++++         E     V+   + S+        PK+   K         ++  K  
Sbjct: 120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQ 179

Query: 217 VKVEEKEV 224
            K+  K  
Sbjct: 180 KKLHRKCA 187

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 84.6 bits (210), Expect = 4e-20
 Identities = 32/130 (24%), Positives = 59/130 (45%), Gaps = 18/130 (13%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
              K+ GN  ++++D   A + Y+KA++L P N     +  +N AA Y +    ++   +
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT---FY-NNKAAVYFEEK--KFAECV 62

Query: 106 HECNLALEVTP-------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEI 158
             C  A+EV         L +KA+ +    ++  N L LA +     L++     +  ++
Sbjct: 63  QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKV 122

Query: 159 AERVKKELEK 168
                KELEK
Sbjct: 123 -----KELEK 127

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 90.0 bits (224), Expect = 5e-20
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
            +L E   +L +   +  A  KYE  +K  P         +  +  C+ +    +   AI
Sbjct: 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDE--KPVEAI 292

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165
             C+  L++ P    AL  RA  Y      D A +D          +    E  E+ ++ 
Sbjct: 293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352

Query: 166 LEK 168
           L++
Sbjct: 353 LKQ 355

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 6/124 (4%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
           ++  E G KL        AL ++  A+   P N           A  ++ MG  +   A+
Sbjct: 4   EKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMG--KSKAAL 57

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165
            +    + +   ++ A L+R        +LD A  D   VL   P      E   ++ K 
Sbjct: 58  PDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117

Query: 166 LEKR 169
            E +
Sbjct: 118 DEMQ 121

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
            Q L+ +    F   D+  A+   +K L++   +    + LR   A C+++ G  E  +A
Sbjct: 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWD----AELRELRAECFIKEG--EPRKA 173

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164
           I +   A ++    ++A  K +  Y  L   +L+  +V   L  +  +       ++VKK
Sbjct: 174 ISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK 233

Query: 165 ELEKR 169
             +  
Sbjct: 234 LNKLI 238

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 13/115 (11%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRN-----------HIDVSYLRSNMAACYMQMGLSE 100
           G+ L ++     A   ++K LK  P               D      + A         +
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGA--D 135

Query: 101 YPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           Y  AI   +  LEV    ++    RA C+        A  D+      +  N  A
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 24/153 (15%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
                ++ +   A+   + A KL   N    ++    ++  Y Q+G  ++  ++ E    
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTE--AFY--KISTLYYQLG--DHELSLSEVREC 214

Query: 112 LEVTPLYSKA------------LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIA 159
           L++   + +             L++ A       R   A     +V+  EP        +
Sbjct: 215 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274

Query: 160 ER----VKKELEK--RGLRVNDTVIELPPEYVE 186
           +        + EK    +R+   V+++ P+ V 
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVN 307

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 89.0 bits (221), Expect = 1e-19
 Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 28/195 (14%)

Query: 1   MGRNSGKTKKQI---------GGQSVGGSPKQIKVGEHSPKSYDKDTEV-----FIGMSQ 46
           +     K  K            G   G  PK      H     D D ++      + +S+
Sbjct: 165 VEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISE 224

Query: 47  ELKEEGNKLFQKRDHGGALLKYEKALKLL----------PRNHIDVSY--LRSNMAACYM 94
           +LK  GN  F+ ++   A+ KY K L+ +              +         N+ AC +
Sbjct: 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL 284

Query: 95  QMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154
           +  +S++  A+  C  ALE+ P  +KAL +RA+ ++ L   D A  D+       P++  
Sbjct: 285 K--MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342

Query: 155 AAEIAERVKKELEKR 169
                 +VK++++ +
Sbjct: 343 IQAELLKVKQKIKAQ 357

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 87.8 bits (217), Expect = 2e-19
 Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 15/155 (9%)

Query: 28  EHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSY--- 84
           +      D   E  IG +   K +GN LF++     A+ +YE A+  +  + +   Y   
Sbjct: 162 KEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKY 221

Query: 85  ----------LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNR 134
                        N+AAC +++    Y  AI  CN+ L       KAL +R +    L +
Sbjct: 222 QDMALAVKNPCHLNIAACLIKLK--RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQ 279

Query: 135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR 169
           +D A  D        P +         + ++ +  
Sbjct: 280 MDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 87.0 bits (216), Expect = 8e-19
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 2/142 (1%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
            +L E   +L +   +  A  KYE  +K  P         +  +  C+ +    +   AI
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDE--KPVEAI 315

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165
             C+  L++ P    AL  RA  Y      D A +D  T       +    E  E+ ++ 
Sbjct: 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375

Query: 166 LEKRGLRVNDTVIELPPEYVEP 187
           L++   R    ++ +     + 
Sbjct: 376 LKQSQKRDYYKILGVKRNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 86.3 bits (214), Expect = 1e-18
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 6/126 (4%)

Query: 42  IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEY 101
           +   ++  E G KL        AL ++  A+   P N+I         A  ++ MG  + 
Sbjct: 23  MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI----AYYRRATVFLAMG--KS 76

Query: 102 PRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER 161
             A+ +    +++   ++ A L+R        +LD A  D   VL   P      E   +
Sbjct: 77  KAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136

Query: 162 VKKELE 167
           + K  E
Sbjct: 137 LIKSDE 142

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
           Q L+ +    F   D+  A+   +K L++   +      LR   A C+++ G  E  +AI
Sbjct: 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA----ELRELRAECFIKEG--EPRKAI 197

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165
            +   A ++    ++A  K +  Y  L   +L+  +V   L  +  +       ++VKK 
Sbjct: 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257

Query: 166 LEKR 169
            +  
Sbjct: 258 NKLI 261

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 29/174 (16%), Positives = 57/174 (32%), Gaps = 14/174 (8%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNH---------IDVSYLRSNMAACYMQMGLSEYP 102
           G+ L ++     A   ++K LK  P  +         I    ++   +      G  +Y 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 103 RAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV 162
            AI   +  LEV    ++    RA C+        A  D+      +  N  A      +
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220

Query: 163 KKELEK--RGLRVNDTVIELPPEYVEPPVTSIAPKVVKEKTKKKKKSNKVEQKK 214
             +L      L      ++L  ++          K VK+  K  + + ++ +  
Sbjct: 221 YYQLGDHELSLSEVRECLKLDQDHKR---CFAHYKQVKKLNKLIESAEELIRDG 271

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 83.3 bits (206), Expect = 2e-17
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           +  LK++GN+ F+ + +  A+  Y  AL+L   +   V Y  SN++ACY+ +G  +  + 
Sbjct: 6   ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DP--VFY--SNLSACYVSVG--DLKKV 58

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV-LNKEPKNIMAAEIAERVK 163
           +     ALE+ P YSK LL+RA   E L +   A  D++ + LN +  +     + ER  
Sbjct: 59  VEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNL 118

Query: 164 KELE----KRGLRVNDTVIELPPEYVEPPVTSIAPKVVKEKTKKKKKS 207
            +      K      DT    P E    P      K     +     S
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.5 bits (178), Expect = 6e-14
 Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 7/135 (5%)

Query: 21  PKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI 80
            K  ++ E      ++D ++   ++  L+  G   F K D  GA    +KA++L PR + 
Sbjct: 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN- 271

Query: 81  DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFR 140
             SY    MA         +     +  + AL++    S     R +    L   D A +
Sbjct: 272 --SY--IYMALIMADRN--DSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGK 325

Query: 141 DVTTVLNKEPKNIMA 155
           D       +P+NI  
Sbjct: 326 DFDKAKELDPENIFP 340

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 16/148 (10%)

Query: 32  KSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA 91
             + +    F    +        L  K D   AL +Y+ A++L  +      Y    +A 
Sbjct: 359 TLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG--IY--VGIAP 414

Query: 92  CYMQMG-------LSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTT 144
              +         +  +  A +    A ++ P   +A +  A+       +D A      
Sbjct: 415 LVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474

Query: 145 VL-----NKEPKNIMAAEIAERVKKELE 167
                   +E    +    A +V++ + 
Sbjct: 475 SADLARTMEEKLQAITFAEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 17/104 (16%), Positives = 32/104 (30%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G   F  +++  A   ++KA +L P N     +    +A    +    ++       + A
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPEN----IFPYIQLACLAYREN--KFDDCETLFSEA 364

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
               P   +     A      N  D A +     +  E K    
Sbjct: 365 KRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 82.8 bits (204), Expect = 2e-17
 Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 37/226 (16%)

Query: 29  HSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSY---- 84
            + +S++ DT+  +  +  +KE+G   F+   +  A+++Y K +  L   +         
Sbjct: 252 KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKA 311

Query: 85  -------LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDL 137
                     N+A CY+++   EY +A+  C+ AL +     K L +R      +N  + 
Sbjct: 312 SESFLLAAFLNLAMCYLKLR--EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 369

Query: 138 AFRDVTTVLNKEPKNIMAAEIAERVKKEL------EKRGLRVNDTVIELPPEYVEPPVTS 191
           A  D   VL   P+N  A       +K+       ++R                     +
Sbjct: 370 AKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYA------------------N 411

Query: 192 IAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKEVDEKIEDKRVDGRI 237
           +  K  ++  K++      ++   GV  E+    + +E+++ +G +
Sbjct: 412 MFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEKPEGHV 457

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 78.6 bits (194), Expect = 7e-16
 Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 7/124 (5%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           + +LK  GN  F  ++   A+  Y+ A++L P     V Y  SN++ACY+  G  +  + 
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP--VFY--SNISACYISTG--DLEKV 78

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV-LNKEPKNIMAAEIAERVK 163
           I     ALE+ P +SKALL+RA   E+L     A  D++ + LN +        + ER  
Sbjct: 79  IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNL 138

Query: 164 KELE 167
            +  
Sbjct: 139 NKQA 142

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 22/135 (16%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 21  PKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI 80
            K   +      +   D  +    +  L   G   F K +   A +  ++++ L P  + 
Sbjct: 219 TKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPN- 277

Query: 81  DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFR 140
             SY    +A                    A+++ P Y      R + Y  L     A  
Sbjct: 278 --SY--IFLALTLADKE--NSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 141 DVTTVLNKEPKNIMA 155
           D     +  P+N+  
Sbjct: 332 DFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 16/96 (16%), Positives = 27/96 (28%), Gaps = 2/96 (2%)

Query: 60  DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS 119
            H        +   L P      +    N    +       +  AI     A+E+ P   
Sbjct: 2   SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAK--NFNEAIKYYQYAIELDPNEP 59

Query: 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
                 + CY +   L+      T  L  +P +  A
Sbjct: 60  VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA 95

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 6/101 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
              L  K +       ++KA+ L P  +    Y   +    Y  +   +Y  A  +   A
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNP-EYPPTYY---HRGQMYFILQ--DYKNAKEDFQKA 336

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
             + P      ++ A       +   +         K P  
Sbjct: 337 QSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G   F  +D+  A   ++KA  L P N     Y    +A    + G  ++  +    N  
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVY--PY--IQLACLLYKQG--KFTESEAFFNET 370

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
               P   +     A         D A +        E      
Sbjct: 371 KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.1 bits (188), Expect = 7e-16
 Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 6/137 (4%)

Query: 32  KSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA 91
           K  + +  V    ++E + EG + F K D   A+  Y + +K  P +     Y  SN AA
Sbjct: 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR--GY--SNRAA 181

Query: 92  CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151
              ++    +P AI +CN A+E  P + +A +++A    A+     A   +     K+ +
Sbjct: 182 ALAKLM--SFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAE 239

Query: 152 NIMAAEIAERVKKELEK 168
               +   E  +   + 
Sbjct: 240 VNNGSSAREIDQLYYKA 256

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 73.0 bits (180), Expect = 8e-15
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 10/145 (6%)

Query: 44  MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPR 103
           M+ + K EGNK ++ R    A+  Y KA +L      D++YL +N AA   + G  EY  
Sbjct: 4   MADKEKAEGNKFYKARQFDEAIEHYNKAWELHK----DITYL-NNRAAAEYEKG--EYET 56

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
           AI   N A+E            ++ +  +        D+   +    K++     A+ + 
Sbjct: 57  AISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-IL 115

Query: 164 KELEK--RGLRVNDTVIELPPEYVE 186
            +L    + L+  +    + PE  E
Sbjct: 116 TKLRNAEKELKKAEAEAYVNPEKAE 140

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 10/104 (9%), Positives = 31/104 (29%), Gaps = 7/104 (6%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
                +  +    L   +K ++   +     S      A    ++      + + +    
Sbjct: 79  SKSFARIGNAYHKLGDLKKTIEYYQK-----SLTEHRTADILTKLR--NAEKELKKAEAE 131

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
             V P  ++      + Y   +    A +  T ++ + P++   
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 6/123 (4%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
           ++L   G   +Q      A   ++    L   +     Y    + AC   +G   Y +A+
Sbjct: 19  EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA---RYF-LGLGACRQSLG--LYEQAL 72

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165
              +    +     +     A C+  L  LD A     +             +A R    
Sbjct: 73  QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132

Query: 166 LEK 168
           LE 
Sbjct: 133 LEA 135

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 6/84 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G        +  AL  Y     +             + A C++Q+G  +   A      A
Sbjct: 59  GACRQSLGLYEQALQSYSYGALMDINEP--RFPF--HAAECHLQLG--DLDGAESGFYSA 112

Query: 112 LEVTPLYSKALLKRARCYEALNRL 135
             +           AR    L  +
Sbjct: 113 RALAAAQPAHEALAARAGAMLEAV 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 13/122 (10%), Positives = 32/122 (26%), Gaps = 10/122 (8%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
            ++       + K     A + +         N          +AA Y      ++ +A 
Sbjct: 37  DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV----DYIMGLAAIYQIKE--QFQQAA 90

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165
               +A  +       +    +C   L     A      V+          ++  + +  
Sbjct: 91  DLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE----KLKIKAQSY 146

Query: 166 LE 167
           L+
Sbjct: 147 LD 148

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 17/155 (10%)

Query: 47  ELKEEGNKLFQKRDHGGALLKYEKALKLLPRN------------HIDVSYLRSNMAACYM 94
           E+ ++ +   +   +G A+  + + + L                    S L + +A  Y 
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 95  QMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154
           +     Y +A       L+  P     L   A       +   A R    +L  E  N+ 
Sbjct: 66  KNR--NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123

Query: 155 AAE---IAERVKKELEKRGLRVNDTVIELPPEYVE 186
           A         +  E EK+ L  +   +  P +   
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 7/119 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
                 +     AL  YEK L+L   +++  +     +   Y      +  + +      
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQLEA-DNLAANI---FLGNYYYLTA-EQEKKKLETDYKK 149

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAE--RVKKELEK 168
           L        A  +         R + A   +  V+ + P       + +  R++KE+ +
Sbjct: 150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVNR 208

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHI---DVSYLRSNMAACYMQMGLSEYPRAIHEC 108
           G   F K D   A+  ++ AL L+ +        +   +N+   Y ++    Y  AI   
Sbjct: 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK--MYDAAIDAL 539

Query: 109 NLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           N  L ++   +      A  Y       LA   +   L   P  IMA
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 20/114 (17%)

Query: 32  KSYDK-------DTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSY 84
           + + K           +IG +     EG        H  A+  Y  A +L    H+   Y
Sbjct: 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGE-------HDQAISAYTTAARLFQGTHL--PY 444

Query: 85  LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA 138
           L   +   +MQ+G      A      +  +       L +        + +  A
Sbjct: 445 L--FLGMQHMQLG--NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTA 494

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 11/124 (8%), Positives = 30/124 (24%), Gaps = 6/124 (4%)

Query: 32  KSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA 91
            +Y   ++      + L           D       Y  ++  L ++      L    A 
Sbjct: 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSS----DLLLCKAD 313

Query: 92  CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151
                    +   +      LE+ P                   +  +     ++++ P+
Sbjct: 314 TLFVRS--RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE 371

Query: 152 NIMA 155
             + 
Sbjct: 372 KAVT 375

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G           A   + K+  + P+     +++    A  +   G  E+ +AI     A
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGP--AWI--GFAHSFAIEG--EHDQAISAYTTA 433

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
             +        L     +  L  + LA   + +       + + 
Sbjct: 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 32  KSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA 91
           + Y          S  L  + + LF +      L    K L++ P  ++DV        A
Sbjct: 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYP---LHLA 347

Query: 92  CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA 138
              + G  E  +     N  ++  P  +   L     Y  +N++  A
Sbjct: 348 SLHESG--EKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G+   + + +  A+    + L L   +    + + + +A  Y+         AI   + +
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTND----ANVHTAIALVYLHKK--IPGLAITHLHES 576

Query: 112 LEVTPLYSKALLKRARCYE 130
           L ++P    A     R  E
Sbjct: 577 LAISPNEIMASDLLKRALE 595

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 25/205 (12%), Positives = 60/205 (29%), Gaps = 34/205 (16%)

Query: 15  QSVGGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKL 74
             +G +    K  +++ K   +D  + +  +      G       +   A   Y++AL +
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMV 229

Query: 75  LPRNHIDVSYLRSN--------------------------MAACYMQMGLSEYPR----- 103
             + +     L SN                                 + L++        
Sbjct: 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELR 289

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
              +   ++      S  LL +A      +R        T +L  +P N+    +     
Sbjct: 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349

Query: 164 KELEKRG--LRVNDTVIELPPEYVE 186
            E  ++     +++ +++  PE   
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAV 374

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 7/122 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSY-----LRSNMAACYMQMGLSEYPRAIH 106
           G   FQ  +   A   +  AL+ +     +V+      L +N+     ++   +Y  A+ 
Sbjct: 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK--KYAEALD 257

Query: 107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166
               AL + P  +         +  +   + A     T L     +  +  +     +  
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMY 317

Query: 167 EK 168
             
Sbjct: 318 IG 319

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G+   + + +  AL  + +AL L+P+N    +   S +   +  MG   +  A+   + A
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQN----ASTYSAIGYIHSLMG--NFENAVDYFHTA 296

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAF 139
           L +    + ++     C E       A+
Sbjct: 297 LGLRRDDTFSVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G+    + +H  A+  Y  A +L+   H  +  L   +   Y          A    + A
Sbjct: 132 GHSFAVESEHDQAMAAYFTAAQLMKGCH--LPML--YIGLEYGLTN--NSKLAERFFSQA 185

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLA 138
           L + P     + +             A
Sbjct: 186 LSIAPEDPFVMHEVGVVAFQNGEWKTA 212

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 7/105 (6%)

Query: 52  GNKLF-QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL 110
           G         +  A     KA  L                  +      E+ +A+     
Sbjct: 97  GCYYLMVGHKNEHARRYLSKATTLEKTYG----PAWIAYGHSFAVES--EHDQAMAAYFT 150

Query: 111 ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           A ++       +L     Y   N   LA R  +  L+  P++   
Sbjct: 151 AAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFV 195

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 14/112 (12%)

Query: 33  SYDKDTEVFIGMSQELKEE--------GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSY 84
           SY+K +E  I  S +  +E          + +   D           ++  P  H     
Sbjct: 2   SYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLP 60

Query: 85  LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLD 136
           +        +++   +     +  +  +++ P    +       Y  +   +
Sbjct: 61  VHIG---TLVELN--KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN 107

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 59.2 bits (143), Expect = 7e-11
 Identities = 22/125 (17%), Positives = 37/125 (29%), Gaps = 6/125 (4%)

Query: 44  MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPR 103
             ++L       +Q   +  A   ++    L   +    S     + AC   MG  +Y  
Sbjct: 20  TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD----SRFFLGLGACRQAMG--QYDL 73

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
           AIH  +    +     +     A C      L  A   +              E++ RV 
Sbjct: 74  AIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133

Query: 164 KELEK 168
             LE 
Sbjct: 134 SMLEA 138

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 8/137 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G            L    +A  L P+    V+   ++       +      R +     A
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQV--VAI--ASHDGGKQALE--TVQRLLPVLCQA 370

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK--R 169
             +TP    A+       +AL  +      +       P+ ++A    +  K+ LE   R
Sbjct: 371 HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQR 430

Query: 170 GLRVNDTVIELPPEYVE 186
            L V      L P+ V 
Sbjct: 431 LLPVLCQAHGLTPQQVV 447

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 12/139 (8%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G            L    +A  L P+    V+   ++ +     +      R +     A
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQV--VAI--ASNSGGKQALE--TVQRLLPVLCQA 302

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER--VKKELEK- 168
             +TP    A+       +AL  +      +       P+ ++A  IA     K+ LE  
Sbjct: 303 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA--IASHDGGKQALETV 360

Query: 169 -RGLRVNDTVIELPPEYVE 186
            R L V      L PE V 
Sbjct: 361 QRLLPVLCQAHGLTPEQVV 379

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 9e-09
 Identities = 24/137 (17%), Positives = 41/137 (29%), Gaps = 8/137 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G            L    +A  L P+    V+   ++       +      R +     A
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQV--VAI--ASNGGGKQALE--TVQRLLPVLCQA 234

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK--R 169
             +TP    A+       +AL  +      +       P+ ++A       K+ LE   R
Sbjct: 235 HGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQR 294

Query: 170 GLRVNDTVIELPPEYVE 186
            L V      L P+ V 
Sbjct: 295 LLPVLCQAHGLTPQQVV 311

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 8/143 (5%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
             +                L    +A  L P+    V+   ++       +      R +
Sbjct: 73  VAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV--VAI--ASHDGGKQALE--TVQRLL 126

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE 165
                A  +TP    A+       +AL  +      +       P+ ++A       K+ 
Sbjct: 127 PVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQA 186

Query: 166 LEK--RGLRVNDTVIELPPEYVE 186
           LE   R L V      L P+ V 
Sbjct: 187 LETVQRLLPVLCQAHGLTPQQVV 209

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 21/157 (13%), Positives = 39/157 (24%), Gaps = 8/157 (5%)

Query: 32  KSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA 91
               +   +       +                L    +A  L P   +       +   
Sbjct: 93  PVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP-EQVVAIA---SHDG 148

Query: 92  CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151
               +        +     A  +TP    A+       +AL  +      +       P+
Sbjct: 149 GKQALE--TVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 206

Query: 152 NIMAAEIAERVKKELEK--RGLRVNDTVIELPPEYVE 186
            ++A       K+ LE   R L V      L P+ V 
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 243

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 6/105 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G            L    +A  L P     V+   ++       +      R +     A
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQV--VAI--ASHDGGKQALE--TVQRLLPVLCQA 438

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA 156
             +TP    A+        AL  +          L     + + A
Sbjct: 439 HGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVA 483

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 13/130 (10%)

Query: 64  ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-----LSEYPRAIHECNLALEVTPLY 118
           A+  +  AL   P N      L                 L    R +     A  +TP  
Sbjct: 52  AVHAWRNALTGAPLN------LTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQ 105

Query: 119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK--RGLRVNDT 176
             A+       +AL  +      +       P+ ++A    +  K+ LE     L V   
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165

Query: 177 VIELPPEYVE 186
              L PE V 
Sbjct: 166 AHGLTPEQVV 175

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 23/137 (16%), Positives = 39/137 (28%), Gaps = 8/137 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
                        L    +A  L P     V+   ++       +      R +     A
Sbjct: 233 DGGKQALETMQRLLPVLCQAHGLPPDQV--VAI--ASNIGGKQALE--TVQRLLPVLCQA 286

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK--R 169
             +TP    A+       +AL  +      +       P  ++A    +  K+ LE   R
Sbjct: 287 HGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQR 346

Query: 170 GLRVNDTVIELPPEYVE 186
            L V      L P+ V 
Sbjct: 347 LLPVLCQAHGLTPDQVV 363

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 9e-08
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 8/137 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
                        L    +A  L P     V+   ++       +      R +     A
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQV--VAI--ASHGGGKQALE--TVQRLLPVLCQA 320

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK--R 169
             +TP    A+       +AL  +      +       P  ++A       K+ LE   R
Sbjct: 321 HGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQR 380

Query: 170 GLRVNDTVIELPPEYVE 186
            L V      L P+ V 
Sbjct: 381 LLPVLCQAHGLTPDQVV 397

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 12/139 (8%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G            L    +A  L P          ++       +      R +     A
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQV----VAIASNGGGKQALE--TVQRLLPVLCQA 591

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER--VKKELEK- 168
             +T +   A+       +AL  +      +       P  ++A  IA     K+ LE  
Sbjct: 592 HGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA--IASHDGGKQALETV 649

Query: 169 -RGLRVNDTVIELPPEYVE 186
            R L V      L P+ V 
Sbjct: 650 QRLLPVLCQAHGLTPDQVV 668

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 9e-07
 Identities = 22/157 (14%), Positives = 39/157 (24%), Gaps = 8/157 (5%)

Query: 32  KSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA 91
               +   +       +                L    +A  L P     V+   ++   
Sbjct: 484 PVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQV--VAI--ASNGG 539

Query: 92  CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151
               +      R +     A  +TP    A+       +AL  +      +         
Sbjct: 540 GKQALET--VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597

Query: 152 NIMAAEIAERVKKELEK--RGLRVNDTVIELPPEYVE 186
            ++A       K+ LE   R L V      L P  V 
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVV 634

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 23/136 (16%), Positives = 38/136 (27%), Gaps = 7/136 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G            L    +A  L P + +              +  L    R +     A
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTP-DQVVAIASHDGG-----KQALETVQRLLPVLCQA 354

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA-AEIAERVKKELEKRG 170
             +TP    A+       +AL  +      +       P  ++A A    +   E  +R 
Sbjct: 355 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRL 414

Query: 171 LRVNDTVIELPPEYVE 186
           L V      L P+ V 
Sbjct: 415 LPVLCQAHGLTPDQVV 430

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 24/176 (13%), Positives = 42/176 (23%), Gaps = 18/176 (10%)

Query: 18  GGSPKQIKVGEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR 77
            G  + ++  +       +   +       +                L    +A  L P 
Sbjct: 606 IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP- 664

Query: 78  NHIDVSYLRSNMAACYMQMG-----LSEYPRAIHECNLALEVTPLYSKALLKRARCYEAL 132
                     +        G     L    R +     A  +T     A+       +AL
Sbjct: 665 ----------DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714

Query: 133 NRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK--RGLRVNDTVIELPPEYVE 186
             +      +       P  ++A       K+ LE   R L V      L P  V 
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVV 770

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 22/129 (17%), Positives = 38/129 (29%), Gaps = 10/129 (7%)

Query: 64  ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-----LSEYPRAIHECNLALEVTPLY 118
           AL   ++ L +L + H     L  +              L    R +        +TP  
Sbjct: 815 ALETVQRLLPVLCQAH----GLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQ 870

Query: 119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA-AEIAERVKKELEKRGLRVNDTV 177
             A+       +AL  +      +          ++A A    +   E  +R L V    
Sbjct: 871 VVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQD 930

Query: 178 IELPPEYVE 186
             L P+ V 
Sbjct: 931 HGLTPDQVV 939

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 25/130 (19%), Positives = 36/130 (27%), Gaps = 13/130 (10%)

Query: 64  ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-----LSEYPRAIHECNLALEVTPLY 118
           A+     AL   P N      L                 L    R +     A  +TP  
Sbjct: 172 AVHASRNALTGAPLN------LTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQ 225

Query: 119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK--RGLRVNDT 176
             A+       +AL  +      +       P  ++A       K+ LE   R L V   
Sbjct: 226 VVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQ 285

Query: 177 VIELPPEYVE 186
              L P+ V 
Sbjct: 286 AHGLTPDQVV 295

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.3 bits (140), Expect = 3e-09
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
            + L Q+     AL+ Y++A+++ P          SNM     +M   +   A+     A
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFA----DAYSNMGNTLKEMQ--DVQGALQCYTRA 103

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           +++ P ++ A    A  ++    +  A     T L  +P    A
Sbjct: 104 IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 8/109 (7%)

Query: 64  ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123
              + E  L     N +    LR  +   Y +    ++  A+     AL+  P YS A  
Sbjct: 4   ITERLEAMLAQGTDNML----LRFTLGKTYAEHE--QFDAALPHLRAALDFDPTYSVAWK 57

Query: 124 KRARCYEALNRLDLAFRDVTTVLNKEPKN--IMAAEIAERVKKELEKRG 170
              +  +       A +   + L            +  +   + L +  
Sbjct: 58  WLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLARED 106

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.0 bits (136), Expect = 9e-09
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 10/138 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
            ++ +Q  D   A     +  +  P ++  V      +++ + Q       R+ H   LA
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQEP-DNTGVLL---LLSSIHFQCR--RLDRSAHFSTLA 59

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE---IAERVKKELEK 168
           ++  PL ++A       Y+   +L  A       L  +P  I        A     ++E 
Sbjct: 60  IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119

Query: 169 RGLRVNDTVIELPPEYVE 186
             ++   + ++  P+   
Sbjct: 120 -AVQAYVSALQYNPDLYC 136

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           GN   ++     A+  Y  AL+L P + ID      N+AA  +  G  +   A+     A
Sbjct: 74  GNVYKERGQLQEAIEHYRHALRLKP-DFIDGYI---NLAAALVAAG--DMEGAVQAYVSA 127

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           L+  P             +AL RL+ A       +  +P   +A
Sbjct: 128 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.9 bits (133), Expect = 2e-08
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           GN L + R    A+  Y +AL L P NH  V     N+A  Y + G      AI     A
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSP-NHAVVHG---NLACVYYEQG--LIDLAIDTYRRA 263

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           +E+ P +  A    A   +    +  A     T L   P +  +
Sbjct: 264 IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 26/104 (25%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
            N L +K     A   Y  AL+L P  H D      N+A    + G      A+     A
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCP-THADSLN---NLANIKREQG--NIEEAVRLYRKA 331

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           LEV P ++ A    A   +   +L  A       +   P    A
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.7 bits (130), Expect = 5e-08
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           GN L        A   Y KA++  P     V++  SN+   +   G  E   AIH    A
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFA--VAW--SNLGCVFNAQG--EIWLAIHHFEKA 195

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           + + P +  A +      +     D A       L+  P + + 
Sbjct: 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
            N   ++ +   A+  Y KAL++ P    + +   SN+A+   Q G  +   A+     A
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFP----EFAAAHSNLASVLQQQG--KLQEALMHYKEA 365

Query: 112 LEVTPLYSKALLKRARCYEAL 132
           + ++P ++ A        + +
Sbjct: 366 IRISPTFADAYSNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 88  NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
            +A    Q G  ++  A   C       P  +  LL  +  +    RLD +    T  + 
Sbjct: 4   ELAHREYQAG--DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 148 KEPKNIMA 155
           + P    A
Sbjct: 62  QNPLLAEA 69

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G  L +K     A+ +Y+ A+       +D+      + + +   G   +P AI      
Sbjct: 81  GKILMKKGQDSLAIQQYQAAVDRDT-TRLDMYG---QIGSYFYNKG--NFPLAIQYMEKQ 134

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           +  T    K   +  + Y        A      VL  +P   + 
Sbjct: 135 IRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 9/107 (8%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL- 110
            + LF+  ++  A+  + K       +     Y+ +  A CY ++   +Y  A  +    
Sbjct: 10  ADFLFKNNNYAEAIEVFNKLEAKKYNSP----YIYNRRAVCYYELA--KYDLAQKDIETY 63

Query: 111 --ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
              +  T   S       +      +  LA +     ++++   +  
Sbjct: 64  FSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 9/104 (8%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G+  + K +   A+   EK ++    +     +    +   Y      EY +A       
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKV--F--YELGQAYYYNK--EYVKADSSFVKV 168

Query: 112 LEVTPLYSKALLKRARCYEALN---RLDLAFRDVTTVLNKEPKN 152
           LE+ P      L RAR   A +   +  LA      ++      
Sbjct: 169 LELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 8/86 (9%)

Query: 54  KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-----LSEYPRAIHEC 108
                   G A   YEK +++           +  +      +        +  +A    
Sbjct: 188 AQDPDTKQGLAKPYYEKLIEVCAPGGAK---YKDELIEANEYIAYYYTINRDKVKADAAW 244

Query: 109 NLALEVTPLYSKALLKRARCYEALNR 134
              L + P   KA+       E  + 
Sbjct: 245 KNILALDPTNKKAIDGLKMKLEHHHH 270

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 28/157 (17%), Positives = 48/157 (30%), Gaps = 8/157 (5%)

Query: 32  KSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA 91
           K Y   TE          EEG K  ++ D    +L  E A+   P    +       +  
Sbjct: 52  KGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQ---FLGI 107

Query: 92  CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151
              +        AI      LE+ P   KAL+  A  Y   +    A   +   + + PK
Sbjct: 108 TQAENE--NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165

Query: 152 NIMAAEIAERVKKELEKRG--LRVNDTVIELPPEYVE 186
                +  +       +       +  +  +   Y+E
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLE 202

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G       +   A+  +  AL + P ++     L + + A       SE   A+     A
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYS----LWNRLGATLANGDRSE--EAVEAYTRA 273

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
           LE+ P + ++          L     A  +  T L+ + K+
Sbjct: 274 LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 50.5 bits (121), Expect = 4e-08
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 6/102 (5%)

Query: 50  EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECN 109
           EEG  + +  +   A L +E   +  P    +      ++     +    +   AI   N
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWR---SLGLTQAENE--KDGLAIIALN 75

Query: 110 LALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151
            A  + P         A  +   +  + A   +   L  +P+
Sbjct: 76  HARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 5e-08
 Identities = 56/386 (14%), Positives = 117/386 (30%), Gaps = 108/386 (27%)

Query: 78  NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC---YEALNR 134
           +H+D           Y  + LS +  A  + N   +      K++L +        + + 
Sbjct: 5   HHMDFET--GEHQYQYKDI-LSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDA 60

Query: 135 LDLAFRDVTTVLNKEPKNIMAA--E---------IAERVKKELEKRGLRVNDTVIELPPE 183
           +    R   T+L+K  + ++    E         +   +K E  +  +     + +    
Sbjct: 61  VSGTLRLFWTLLSK-QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119

Query: 184 YVEPPVTSIAPKVVKEKTKKKKKSNKVEQKK--TGVKVEE-----KEV-------DEKIE 229
           Y +  V   A   V       K    + + +    V ++      K           K++
Sbjct: 120 YNDNQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 230 DKRVDGRI------EEKMAEDKVVVEEKI------SSTEDNEPKKTVKLVFGEDIR---- 273
            K  D +I           E  + + +K+      + T  ++    +KL     I+    
Sbjct: 178 CKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELR 235

Query: 274 --VAQLPLNSSLLQLREV----ISDRF-PSCRAVLIKYRDEE------GDLVTITTDEEL 320
             +   P  + LL L  V      + F  SC+ +L+  R ++          T  + +  
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-ILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 321 RWAEASAEMQGSVRLF--------------VVGVNPL---------QDPL-----YERFK 352
                  E      L               V+  NP          +D L     ++   
Sbjct: 295 SMTLTPDE---VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 353 NEKVN-----SLDI-----EQKYFEN 368
            +K+      SL++      +K F+ 
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDR 377

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 57/383 (14%), Positives = 113/383 (29%), Gaps = 120/383 (31%)

Query: 46  QELKEEGNKLFQKRDHGGALL-----KYEKALK---------LLPRN------------- 78
             ++ E  +L + + +   LL     +  KA           L  R              
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 79  HIDVSYLRSNMA--------ACYMQMGLSEYPRAIHECN-LALEV----------TPLYS 119
           HI + +    +           Y+     + PR +   N   L +          T    
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 120 KAL----LKRAR--CYEALNRLDL--AFRDVTTVLNKE---PKNIMA-------AEIAER 161
           K +    L          L   +    F  + +V       P  +++             
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 162 VKKELEKRGL---RVNDTVIELPPEYVEPPVTSIAPKVVKEKTKKKKKSNK--VEQKKTG 216
           V  +L K  L   +  ++ I +P  Y+E          +K K + +   ++  V+     
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLE----------LKVKLENEYALHRSIVDH---- 452

Query: 217 VKVEEKEVDEKIEDKRVDGRI-------------EEKMAEDKVV------VEEKI--SST 255
             + +    + +    +D                 E+M   ++V      +E+KI   ST
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512

Query: 256 EDNEPKKTVKLVFGEDIR------VAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEG 309
             N     +  +  + ++          P    L+     I D  P     LI    +  
Sbjct: 513 AWNASGSILNTL--QQLKFYKPYICDNDPKYERLV---NAILDFLPKIEENLI--CSKYT 565

Query: 310 DLVTIT--TDEELRWAEASAEMQ 330
           DL+ I    ++E  + EA  ++Q
Sbjct: 566 DLLRIALMAEDEAIFEEAHKQVQ 588

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G           A   + +AL + P +  +V      +     Q G   +  A    +  
Sbjct: 50  GVLYDSLGLRALARNDFSQALAIRP-DMPEVFN---YLGIYLTQAG--NFDAAYEAFDSV 103

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
           LE+ P Y+ A L R        R  LA  D+      +P +
Sbjct: 104 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 22/140 (15%), Positives = 35/140 (25%), Gaps = 12/140 (8%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G  L Q  +   A   ++  L+L P  +    Y   N        G      A  +    
Sbjct: 84  GIYLTQAGNFDAAYEAFDSVLELDPTYN----YAHLNRGIALYYGG--RDKLAQDDLLAF 137

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL 171
            +  P      L      + L+    A   +     K  K      I E     + ++ L
Sbjct: 138 YQDDPNDPFRSLWLYLAEQKLDEKQ-AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTL 196

Query: 172 RVN-----DTVIELPPEYVE 186
                        L     E
Sbjct: 197 MERLKADATDNTSLAEHLSE 216

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 3/112 (2%)

Query: 57  QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP 116
           QK D   A    ++  +   +     + +   +     Q  +        +      +  
Sbjct: 156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER---LKADATDNTSLAE 212

Query: 117 LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK 168
             S+      + Y +L  LD A       +     N +    A      L +
Sbjct: 213 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 264

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 2/104 (1%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
              L         L + E+ L        + + L       Y  +G      A ++ + A
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--LRALARNDFSQA 69

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           L + P   +               D A+    +VL  +P    A
Sbjct: 70  LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 20/176 (11%), Positives = 50/176 (28%), Gaps = 23/176 (13%)

Query: 28  EHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRS 87
             +   Y  +        +   EEG  + +  +   A L +E   +  P    +      
Sbjct: 4   LQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWR--- 59

Query: 88  NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
           ++     +    +   AI   N A  + P         A  +   +  + A   +   L 
Sbjct: 60  SLGLTQAENE--KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 117

Query: 148 KEPKNIMAAEIAERVKKELEKRGLRVNDTV-----------------IELPPEYVE 186
            +P+      +  +   +++   ++  D                   +E+ P   +
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ 173

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 21/141 (14%), Positives = 45/141 (31%), Gaps = 20/141 (14%)

Query: 32  KSYDK-------DTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSY 84
                       D ++   +       G       ++  A     +A++L P +      
Sbjct: 159 TLLHAALEMNPNDAQLHASL-------GVLYNLSNNYDSAAANLRRAVELRPDDA----Q 207

Query: 85  LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTT 144
           L + + A        +   A+   N AL++ P Y + +   A  Y  +++ DLA + +  
Sbjct: 208 LWNKLGATLANGNRPQ--EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265

Query: 145 VLNKEPKNIMAAEIAERVKKE 165
            +  +         A R    
Sbjct: 266 AIYMQVGGTTPTGEASREATR 286

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 51  EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL 110
           E        ++         AL++ P N   +     ++   Y       Y  A      
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHA---SLGVLYNLSN--NYDSAAANLRR 197

Query: 111 ALEVTPLYSKALLKRARCYEALNRLDLA 138
           A+E+ P  ++   K        NR   A
Sbjct: 198 AVELRPDDAQLWNKLGATLANGNRPQEA 225

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 7/122 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMA-ACYMQMGLSEYPRAIHECNL 110
           G     + D+  +LL Y +AL+L   N      L + +A   Y Q       +     + 
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENA----ELYAALATVLYYQASQHMTAQTRAMIDK 106

Query: 111 ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK--KELEK 168
           AL +      AL+  A           A      V++     I   ++ E +   K L++
Sbjct: 107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQR 166

Query: 169 RG 170
           R 
Sbjct: 167 RS 168

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 52.2 bits (125), Expect = 2e-07
 Identities = 12/104 (11%), Positives = 25/104 (24%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
            +      D     +  ++ L L P +        + +           +  A      A
Sbjct: 30  ADAELGMGDTTAGEMAVQRGLALHPGHPE----AVARLGRVRWTQQ--RHAEAAVLLQQA 83

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
            +  P +    L      E   + + A    T      P+    
Sbjct: 84  SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 50.6 bits (121), Expect = 6e-07
 Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 6/96 (6%)

Query: 60  DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS 119
           D    LL+   A++  P++ +        +A   + MG  +           L + P + 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFV----AWLMLADAELGMG--DTTAGEMAVQRGLALHPGHP 57

Query: 120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           +A+ +  R      R   A   +    +  P++   
Sbjct: 58  EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A Length = 89

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 257 DNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISD--RFPSCRAVLIKYRDEEGDLVTI 314
               +  VK  +  DI +     + S   L   + D   F + +   +K+ DEEGD  T+
Sbjct: 2   PLGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTV 61

Query: 315 TTDEELRWAEASAEMQ 330
           ++  EL  A    E+ 
Sbjct: 62  SSQLELEEAFRLYELN 77

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 50  EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECN 109
           EEG +  Q+ D   A+L +E A++  P  H++       +     +    +   AI    
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQ---YLGTTQAENE--QELLAISALR 122

Query: 110 LALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
             LE+ P    AL+  A  +   +    A   +   L   P  
Sbjct: 123 RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 7/129 (5%)

Query: 32  KSYDKDTEVFIGMSQELKE-----EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLR 86
            + + D + +  +  EL+E          +           Y+K  +    N +      
Sbjct: 8   SAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQP 67

Query: 87  SNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVL 146
                  +Q G  + P A+     A++  P + +A            +  LA   +   L
Sbjct: 68  FEEGLRRLQEG--DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 125

Query: 147 NKEPKNIMA 155
             +P N  A
Sbjct: 126 ELKPDNQTA 134

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 51  EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL 110
               L            +  A++L P   ID   ++  +   +   G  EY +A+     
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDP-TSID-PDVQCGLGVLFNLSG--EYDKAVDCFTA 242

Query: 111 ALEVTPLYSKALLKRARCYEALNRLDLA 138
           AL V P       K        N+ + A
Sbjct: 243 ALSVRPNDYLLWNKLGATLANGNQSEEA 270

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 48.6 bits (116), Expect = 9e-07
 Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 17/119 (14%)

Query: 44  MSQELKEE------GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG 97
           MS  L E       G     K+D  GAL  +        R          N+   Y  + 
Sbjct: 1   MS--LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRIC-------FNIGCMYTILK 51

Query: 98  LSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA 156
                 A      ++      + A  +R   Y    + DLA +D+   L +   N +  
Sbjct: 52  --NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 14/87 (16%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRS------------NMAACYMQMGLS 99
           G   +Q   +  A+   ++AL  L  N +    +              N+A  Y +    
Sbjct: 78  GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE-- 135

Query: 100 EYPRAIHECNLALEVTPLYSKALLKRA 126
           E+ +A  +  LA  +      + + +A
Sbjct: 136 EWKKAEEQLALATSMKSEPRHSKIDKA 162

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 27/158 (17%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE----------- 100
                +K +   A+   +KAL+ +P N    +YL   +  CY                  
Sbjct: 254 AKFYRRKDEPDKAIELLKKALEYIPNN----AYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

Query: 101 ------YPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM 154
                    A+     A E      +     A  +   ++ + A        +KE   + 
Sbjct: 310 RKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA 369

Query: 155 AAEIAERVKKELEKRGLRVNDTV------IELPPEYVE 186
              +  R       +    +  +      +++  +  E
Sbjct: 370 KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 54  KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS--EYPRAIHECNLA 111
           +L        A+    +A++L P N     YL+  +A    +M     E          A
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLNPDNQ----YLKVLLALKLHKMREEGEEEGEGEKLVEEA 239

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           LE  P  +  L   A+ Y   +  D A   +   L   P N   
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus} Length = 117

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 265 KLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCR--AVLIKYRDEEGDLVTITTDEELRW 322
              F  +             +L   ++  FP+ R       YR E GDLV  ++DEEL  
Sbjct: 41  SFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTM 100

Query: 323 AEASAEMQGSVRLFVV 338
           A +  +     R+++ 
Sbjct: 101 AMSYVK-DDIFRIYIK 115

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 43  GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYP 102
               EL  EG +L +  D    +  +E A+++   +   +S + S +   Y  +   +Y 
Sbjct: 7   ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYA 64

Query: 103 RAIHECNLALEVT------PLYSKALLKRARCYEALNRLDLA 138
           +A+   +  L +          +KA        + L   D A
Sbjct: 65  KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 106

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 64  ALLKYEKALKL-LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL 122
           A+  YEKA+   L    +   YL   + + +  +G  EY +A       ++  P +    
Sbjct: 9   AVPYYEKAIASGLQGKDLAECYL--GLGSTFRTLG--EYRKAEAVLANGVKQFPNHQALR 64

Query: 123 LKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
           +  A     L R +     +  ++ +   +
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDD 94

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 8/102 (7%)

Query: 43  GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYP 102
            M  EL  EG +L    D    +  ++ A++    +   +S + S +   Y  +G  +Y 
Sbjct: 46  SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG--DYN 103

Query: 103 RAIHECNLALEVT------PLYSKALLKRARCYEALNRLDLA 138
           +A+      L +          +K+        + + R D A
Sbjct: 104 KAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEA 145

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECN 109
           GN L        A +  E+ L L  +  + +       N+   Y   G  ++    +   
Sbjct: 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG--KHLGQRNPGK 190

Query: 110 LALEVTPLYSKALLKRARCYE-AL 132
              +V    ++A+      Y+  L
Sbjct: 191 FGDDVKEALTRAV----EFYQENL 210

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 14/83 (16%)

Query: 44  MSQELKEE----------GNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAA 91
           ++ EL E           GN      +   A+  + + L +     + I  +    ++  
Sbjct: 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGN 351

Query: 92  CYMQMGLSEYPRAIHECNLALEV 114
            +  +G   + RA+      L++
Sbjct: 352 AHSAIG--GHERALKYAEQHLQL 372

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 6/137 (4%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G  L++++ +  A  +  +A +          +   N+    +QM   +  +A      +
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVF--ENLGLVSLQMK--KPAQAKEYFEKS 167

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG- 170
           L +        L+ A           A +          +N  +  +  R+ K  E R  
Sbjct: 168 LRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT 227

Query: 171 -LRVNDTVIELPPEYVE 186
                  +  L P  +E
Sbjct: 228 AASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 6/103 (5%)

Query: 53  NKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL 112
           +     R          K  K       +       +   Y+Q G     +A      AL
Sbjct: 11  SSGLVPRGSHMGDQNPLKTDKGRD----EARDAYIQLGLGYLQRG--NTEQAKVPLRKAL 64

Query: 113 EVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           E+ P  + A    A  ++      LA  +    L  + +N   
Sbjct: 65  EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 6/87 (6%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G    Q+ +   A +   KAL++ P +  D       +A  +      E   A  E   A
Sbjct: 44  GLGYLQRGNTEQAKVPLRKALEIDP-SSADAHA---ALAVVFQTEM--EPKLADEEYRKA 97

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLA 138
           L      ++ L           R + A
Sbjct: 98  LASDSRNARVLNNYGGFLYEQKRYEEA 124

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 8/99 (8%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
            EL  EG +L +  D    +  +E A+++   +   +S + S +   Y  +   +Y +A+
Sbjct: 6   LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--DYAKAL 63

Query: 106 HECNLALEVT------PLYSKALLKRARCYEALNRLDLA 138
              +  L +          +KA        + L   D A
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA 102

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B Length = 102

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 266 LVFGEDIRVAQLPLNSSLLQLREVISDRFPSCR--AVLIKYRDEEGDLVTITTDEELRWA 323
             F  +             +L   ++  FP+ R       YR E GDLV  ++DEEL  A
Sbjct: 27  FCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELTMA 86

Query: 324 EASAEMQGSVRLFVV 338
            +  +     R+++ 
Sbjct: 87  MSYVK-DDIFRIYIK 100

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           GN    K  +  A   +EKAL+     + D+ Y    +    +++   +   A+     A
Sbjct: 98  GNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFY---MLGTVLVKLE--QPKLALPYLQRA 151

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           +E+    ++A  +   C      LD A      V  ++P +  A
Sbjct: 152 VELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
            N L    +   AL  Y+KAL+L   +     Y        Y+      Y  A      A
Sbjct: 64  ANLLSSVNELERALAFYDKALELDS-SAATAYY---GAGNVYVVKE--MYKEAKDMFEKA 117

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           L                   L +  LA   +   +     +  A
Sbjct: 118 LRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
             +  +  D+  A   + KA++              N A     +   E  RA+   + A
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYI---NFANLLSSVN--ELERALAFYDKA 83

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
           LE+    + A       Y        A       L    +N   
Sbjct: 84  LELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 6/104 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G  L +      AL   ++A++L   N  +  +       C    G      A+ +    
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNE-NDTEARF---QFGMCLANEG--MLDEALSQFAAV 185

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
            E  P ++ A       Y      + A   +   ++ +P +++A
Sbjct: 186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 64  ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--LSEYPRAIHECNLALEVTPLYSKA 121
           +   +  +  L+PR     S++ S      M  G    +Y +A      A+E     +  
Sbjct: 4   SHHHHHHSSGLVPRG----SHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP 59

Query: 122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA 155
            +  A    ++N L+ A       L  +     A
Sbjct: 60  YINFANLLSSVNELERALAFYDKALELDSSAATA 93

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 6/83 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G  L  +     AL ++    +  P  H D  Y   N    Y         +A+   + A
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDP-GHADAFY---NAGVTYAYKE--NREKALEMLDKA 219

Query: 112 LEVTPLYSKALLKRARCYEALNR 134
           +++ P +  AL  +       + 
Sbjct: 220 IDIQPDHMLALHAKKLLGHHHHH 242

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 44.9 bits (105), Expect = 8e-06
 Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 17/145 (11%)

Query: 42  IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR--------NHIDVSYLRSNMAACY 93
           +  +     +  +     ++  A     +A+++           +    ++  + +A   
Sbjct: 8   VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 67

Query: 94  MQMG-----LSEYPRAIHECNLALEVTP----LYSKALLKRARCYEALNRLDLAFRDVTT 144
             +      L    +A+H  N   E+      L+  A+  RA   + L R   A  +   
Sbjct: 68  AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127

Query: 145 VLNKEPKNIMAAEIAERVKKELEKR 169
           V+    +        ER+ +    R
Sbjct: 128 VVEMIEERKGETPGKERMMEVAIDR 152

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 12/103 (11%), Positives = 28/103 (27%), Gaps = 8/103 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G   +   ++  ++  +EKA++L P                   +    Y  A+   N  
Sbjct: 13  GVLQYDAGNYTESIDLFEKAIQLDP-EESKYWL---MKGKALYNLE--RYEEAVDCYNYV 66

Query: 112 LEVTP--LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
           + V            +A     +   ++           E  +
Sbjct: 67  INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A Length = 85

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 253 SSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLV 312
           SST   +  K +K  + +DI    L  +++  +LR  I+ R  +     ++ +  +G   
Sbjct: 5   SSTSGLKTTK-IKFYYKDDIFALMLKGDTTYKELRSKIAPRIDT-DNFKLQTKLFDGSGE 62

Query: 313 TITTDEELRWA 323
            I TD ++   
Sbjct: 63  EIKTDSQVSNI 73

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 7/102 (6%)

Query: 64  ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL 123
           A   +++              L +  AAC+M  G   +  A      AL+    + + L+
Sbjct: 185 AYYIFQEMADKCSPT----LLLLNGQAACHMAQG--RWEAAEGVLQEALDKDSGHPETLI 238

Query: 124 KRARCYEALNRLDLAFRDVTTVLNKE-PKNIMAAEIAERVKK 164
                 + L +         + L      +    E   +   
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEND 280

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECN 109
           G   F ++++  A+  Y +A K LP   + I+ +     +A  Y  M   +   +++   
Sbjct: 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--QTHVSMYHIL 165

Query: 110 LALEVTPLYSKALLKRARCYEALNRLDLAFRD 141
            AL+   +Y    L   R  ++L  +   + D
Sbjct: 166 QALD---IYQNHPLYSIRTIQSLFVIAGNYDD 194

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 11/113 (9%)

Query: 52  GNKLFQKRDHGGALLK--------YEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPR 103
           GN       + G   K        Y +A K+  +   +   L  N A  +       Y  
Sbjct: 220 GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD-LHLNRATLHKYEE--SYGE 276

Query: 104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA 156
           A+   + A  + P + +   +  +  E L+RL            K+ ++++ +
Sbjct: 277 ALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGS 329

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 8/108 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G   ++K D   A   +  AL     N + +     N++    Q+              +
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCK-NKVSL----QNLSMVLRQLQTDSGDEHSRHVMDS 198

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIA 159
           +        A+        +   L  A+  +     + PK    A  A
Sbjct: 199 VR---QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 5/102 (4%)

Query: 52  GNKLF-QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL 110
           G  L  +      ++  ++KAL         ++    N   C  + G  ++  A      
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTPYIAN--LNKGICSAKQG--QFGLAEAYLKR 138

Query: 111 ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
           +L   P +  A  + AR      +L  A        ++    
Sbjct: 139 SLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVL 180

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 85  LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA 138
           +++ +A  YM+    +Y +A      AL+  P    A L RA  Y+ L   D A
Sbjct: 10  IKTQLAMEYMRGQ--DYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 7/88 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
             +  + +D+  A    E ALK  P  +          A  Y  +      +A      A
Sbjct: 15  AMEYMRGQDYRQATASIEDALKSDP-KNELAWL---VRAEIYQYLK--VNDKAQESFRQA 68

Query: 112 LEVTPLYSKALLKRARC-YEALNRLDLA 138
           L + P  ++            LNR   +
Sbjct: 69  LSIKPDSAEINNNYGWFLCGRLNRPAES 96

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECN 109
           G     +R++  A+  ++KA   L    + I+ +     M+  Y  M   +   ++    
Sbjct: 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--QTYFSMDYAR 167

Query: 110 LALEVTPLYSKALLKRARCYEALNRLDLAFRD 141
            A E   +Y +      R  +  +     F D
Sbjct: 168 QAYE---IYKEHEAYNIRLLQCHSLFATNFLD 196

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECN 109
                  + +  A+  ++KA  +         +     N+  C       +Y  AI    
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS--QYEDAIPYFK 248

Query: 110 LALEVT------PLYSKALLKRARCYEALNRLDLA 138
            A+ V       P   +A     + +  L ++D A
Sbjct: 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA 283

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           GN  +++ D+  A+  Y+KAL+L P    +  Y   N+   Y + G  +Y  AI     A
Sbjct: 42  GNAYYKQGDYDEAIEYYQKALELDP-RSAEAWY---NLGNAYYKQG--DYDEAIEYYQKA 95

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN 152
           LE+ P  ++A       Y      D A       L  +P++
Sbjct: 96  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 38.9 bits (92), Expect = 6e-04
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           GN  +++ D+  A+  Y+KAL+L P    +  Y   N+   Y + G  +Y  AI     A
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALELDP-RSAEAWY---NLGNAYYKQG--DYDEAIEYYQKA 61

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLA 138
           LE+ P  ++A       Y      D A
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEA 88

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G       +   A    ++AL L     I     RS +A  Y+ MG      A+ +   A
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDTPEI-----RSALAELYLSMG--RLDEALAQYAKA 177

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLAFR 140
           LE  P      ++ A       + + A R
Sbjct: 178 LEQAPKDLDLRVRYASALLLKGKAEEAAR 206

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G +L+    +  AL  +E+ALK  P    +  Y    +A   +++G      A+      
Sbjct: 12  GVQLYALGRYDAALTLFERALKENP-QDPEALY---WLARTQLKLG--LVNPALENGKTL 65

Query: 112 LEVTPLYSKALLKRARCYEALNR 134
           +  TP Y    +  +  Y AL R
Sbjct: 66  VARTPRYLGGYMVLSEAYVALYR 88

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B Length = 98

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 261 KKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVL------IKYRDEEGDLVTI 314
                     +I    +    +   L   I+ +  +           IKY+DE+GD V +
Sbjct: 13  NNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVL 72

Query: 315 TTDEELRWA 323
            +DE+   A
Sbjct: 73  GSDEDWNVA 81

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 6/87 (6%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G    +   +  A++  E+         +DV+    ++   Y++ G     R       +
Sbjct: 15  GISHAKAGRYSQAVMLLEQVYDADA-FDVDVAL---HLGIAYVKTG--AVDRGTELLERS 68

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLA 138
           L   P   K        Y  + + DLA
Sbjct: 69  LADAPDNVKVATVLGLTYVQVQKYDLA 95

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G    Q + +  A+    K  +  P  + +V +    +      +G   +  AI    +A
Sbjct: 83  GLTYVQVQKYDLAVPLLIKVAEANP-INFNVRF---RLGVALDNLG--RFDEAIDSFKIA 136

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLA 138
           L + P   K     A  YE + R + A
Sbjct: 137 LGLRPNEGKVHRAIAFSYEQMGRHEEA 163

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           G    +           E++L   P +++ V+     +   Y+Q+   +Y  A+      
Sbjct: 49  GIAYVKTGAVDRGTELLERSLADAP-DNVKVAT---VLGLTYVQVQ--KYDLAVPLLIKV 102

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLA 138
            E  P+      +     + L R D A
Sbjct: 103 AEANPINFNVRFRLGVALDNLGRFDEA 129

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A Length = 77

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 271 DIRVAQLPLNSSLLQLREVISDRFPSC------RAVLIKYRDEEGDLVTITTDEELRWA 323
           +I    +    +   L   I+ +  +           IKY+DE+GD V + +DE+   A
Sbjct: 2   EIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVA 60

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 47  ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106
           +  +   +L  + D   AL   E+ L+  P    +  Y    M   Y ++G  ++ +A++
Sbjct: 2   DQLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYY---LMGNAYRKLG--DWQKALN 56

Query: 107 ECNLALEVTPLYSKA 121
               A+E+ P     
Sbjct: 57  NYQSAIELNPDSPAL 71

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 4/90 (4%)

Query: 81  DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFR 140
           +  + R  +A  +++       RA+      +E  P Y        + YE L+R D A  
Sbjct: 5   EDPFTRYALAQEHLKHD--NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 141 DVTTVLNKEPK--NIMAAEIAERVKKELEK 168
                +    +          +  K + E 
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEG 92

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 52  GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLA 111
           GN  +++ D+  A+  Y+KAL+L P N+ +  Y   N+   Y + G  +Y  AI     A
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELDP-NNAEAWY---NLGNAYYKQG--DYDEAIEYYQKA 69

Query: 112 LEVTPLYSKALLKRARCYEALNRLDLA 138
           LE+ P  ++A       Y      D A
Sbjct: 70  LELDPNNAEAWYNLGNAYYKQGDYDEA 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	429
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.85
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.79
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	99.79
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.77
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	99.77
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.76
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	99.75
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	99.73
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.73
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.69
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.67
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.67
1pqs_A	77	Cell division control protein 24; alpha and beta p	99.66
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.66
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.65
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.65
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.65
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.64
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.64
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.63
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.62
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.62
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.61
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.61
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	99.6
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.6
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.58
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.58
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.58
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.51
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.5
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.5
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.48
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.47
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.45
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.45
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.45
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.44
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.44
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.44
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.44
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.43
2bkf_A	87	Zinc-finger protein NBR1 (NEXT to breast cancer 1;	99.43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.42
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.42
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.4
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.4
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.4
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.4
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.39
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.39
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.39
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.39
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.38
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.38
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.38
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.38
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.37
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.36
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.36
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.36
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.36
1wj6_A	101	KIAA0049 protein, RSGI RUH-024; PB1 domain, protei	99.36
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.36
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.35
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.35
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.34
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.33
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.33
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.32
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.3
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.3
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.3
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.29
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.29
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.28
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.26
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.26
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.26
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.25
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.25
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.23
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.22
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.21
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.21
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.21
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.2
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.2
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.19
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.19
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.18
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.18
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.17
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.16
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.14
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.11
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.1
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.1
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.08
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.03
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.03
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.02
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	99.01
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.01
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.0
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.0
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.99
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.99
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.99
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.99
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.98
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.98
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.96
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.96
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.96
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.95
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.95
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.93
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.93
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.93
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.91
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.91
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.9
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.9
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.89
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.89
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.89
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.89
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.88
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.87
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	98.85
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.83
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.83
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.83
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.81
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.8
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.79
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.77
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.77
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.76
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.75
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.74
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.74
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.73
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.72
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.69
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.67
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.65
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.63
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.61
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.6
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.59
1ip9_A	85	BEM1 protein; ubiquitin alpha/beta roll, signaling	98.59
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.52
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.48
2cu1_A	103	Mitogen-activated protein kinase kinase kinase 2;	98.42
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.41
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.4
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.37
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.34
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.28
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.26
2npt_A	106	Dual specificity mitogen-activated protein kinase;	98.23
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.16
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.09
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.08
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.04
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.95
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.95
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.93
2jrh_A	94	Mitogen-activated protein kinase kinase kinase 3;	97.92
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.91
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.9
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.86
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.75
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.74
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.72
2npt_B	100	Mitogen-activated protein kinase kinase kinase 2;	97.72
2c60_A	111	Human mitogen-activated protein kinase kinase kina	97.71
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.7
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.63
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.56
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.53
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.32
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.97
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.83
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.57
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.38
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.23
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.0
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	95.95
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.95
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.84
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.41
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.37
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.24
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.96
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.61
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.09
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.02
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.27
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.64
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.37
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	89.53
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	89.44
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	87.33
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.33
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.08
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	84.76
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	84.76
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	84.5
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	83.48
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	80.42
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	80.05

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.85  E-value=3.1e-20  Score=158.75  Aligned_cols=115  Identities=31%  Similarity=0.499  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.|..++++|+.||+.|+|++|+..|++||+++|.+..    +|.++|.||+++  |+|++|+.+|++||+++|+++.+|
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI----LYSNRAACLTKL--MEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHhhHHHhh--ccHHHHHHHHHHHHHhhhhhhHHH
Confidence            34678999999999999999999999999999999885    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      +++|.+|..+|++++|+.+|+++++++|++..++..++.++
T Consensus        85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999988764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.79  E-value=7.8e-19  Score=153.75  Aligned_cols=129  Identities=25%  Similarity=0.342  Sum_probs=116.0

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCC------ccHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKL--------LPRNH------IDVSYLRSNMAACYMQMGLSEYPRAIHE  107 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel--------~P~~~------~~~a~l~~nrA~~y~kl~~g~y~eAi~~  107 (429)
                      ++.+..++++|+.+|+.|+|++|+..|.+||.+        .|.+.      +....+|+|+|.||+++  |+|++|+.+
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--~~~~~A~~~   85 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI--GDLHEAEET   85 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH--TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc--CcHHHHHHH
Confidence            477899999999999999999999999999999        33321      12346999999999999  999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHhhccc
Q 014213          108 CNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI-MAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       108 ~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~-~a~~~La~l~~~l~e~~~a  172 (429)
                      |++||+++|.++.+|+++|.+|..+|++++|+.+|++++.++|++. .+...+..+...+.+....
T Consensus        86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~  151 (162)
T 3rkv_A           86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKAD  151 (162)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 7888999998888665443

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=99.79  E-value=4.4e-19  Score=148.30  Aligned_cols=78  Identities=28%  Similarity=0.424  Sum_probs=70.9

Q ss_pred             ceeEEEEe------CCceEEEEccCC-----------ccHHHHHHHHHhhCCCCCc--eEEEEECCCCCEEEecChHHHH
Q 014213          261 KKTVKLVF------GEDIRVAQLPLN-----------SSLLQLREVISDRFPSCRA--VLIKYRDEEGDLVTITTDEELR  321 (429)
Q Consensus       261 ~~~vK~~~------~~DiR~~~i~~~-----------~~~~~L~~~v~~kf~~~~~--~~iky~DedgDliti~~~~dl~  321 (429)
                      .++||+.+      +.|||||.++.+           .+|.+|+++|++.||.+.+  |+|+|+|+|||||||+||+||.
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~~f~l~Y~DedGDlItiSsDeEL~   84 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDEELT   84 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHHHHH
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHHHHH
Confidence            68999999      579999999753           4899999999999987765  9999999999999999999999


Q ss_pred             HHHHhhccCCcEEEEEEe
Q 014213          322 WAEASAEMQGSVRLFVVG  339 (429)
Q Consensus       322 ~a~~~~~~~~~~rl~v~e  339 (429)
                      +|++++. .+.+||||++
T Consensus        85 ~Al~~~~-~~~lRlyVke  101 (102)
T 2kkc_A           85 MAMSYVK-DDIFRIYIKE  101 (102)
T ss_dssp             HHHHHCC-SSEEEEEEEE
T ss_pred             HHHHhcC-CCeEEEEEEc
Confidence            9999976 7799999986

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.77  E-value=9.9e-19  Score=157.97  Aligned_cols=125  Identities=14%  Similarity=0.098  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--------cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--------DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV  114 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--------~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel  114 (429)
                      .+|..+++.|+.+|+.|+|++|+..|++||+++|.++.        ..+.+|+|+|.|+.++  |+|++|+.+|++||++
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L--gr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL--RSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHh
Confidence            67899999999999999999999999999999998421        1245999999999999  9999999999999999


Q ss_pred             -------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213          115 -------TPLYSKAL----LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus       115 -------dP~~~kAl----~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                             +|++.++|    +++|.+|..+|++++|+.+|++|+.++|++..+...+..++..+.+.
T Consensus        87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~  152 (159)
T 2hr2_A           87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR  152 (159)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred             hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence                   99999999    99999999999999999999999999999999888888888877543

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=99.77  E-value=1.8e-18  Score=147.51  Aligned_cols=81  Identities=27%  Similarity=0.376  Sum_probs=71.4

Q ss_pred             CCCceeEEEEeC------CceEEEEccCC-----------ccHHHHHHHHHhhCCCCCc--eEEEEECCCCCEEEecChH
Q 014213          258 NEPKKTVKLVFG------EDIRVAQLPLN-----------SSLLQLREVISDRFPSCRA--VLIKYRDEEGDLVTITTDE  318 (429)
Q Consensus       258 ~~~~~~vK~~~~------~DiR~~~i~~~-----------~~~~~L~~~v~~kf~~~~~--~~iky~DedgDliti~~~~  318 (429)
                      .+-+++||+.+.      .|||||.++.+           .+|.+|+++|++.||.+++  |+|+|+|+|||||||+||+
T Consensus        17 ~~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~~f~l~YkDEdGDlItISsDe   96 (117)
T 2ktr_A           17 HMGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPGGFQAHYRAERGDLVAFSSDE   96 (117)
T ss_dssp             ---CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSSCEEEEEECTTCCEEEECSHH
T ss_pred             ccccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCCcEEEEEECCCCCEEEecCHH
Confidence            356799999995      79999999754           3999999999999987765  9999999999999999999


Q ss_pred             HHHHHHHhhccCCcEEEEEEe
Q 014213          319 ELRWAEASAEMQGSVRLFVVG  339 (429)
Q Consensus       319 dl~~a~~~~~~~~~~rl~v~e  339 (429)
                      ||.||++++. .+.+||||++
T Consensus        97 EL~~Al~~~~-~~~lRlyVke  116 (117)
T 2ktr_A           97 ELTMAMSYVK-DDIFRIYIKE  116 (117)
T ss_dssp             HHHHHHHHCC-SSEEEEEEEE
T ss_pred             HHHHHHHhcC-CCeEEEEEEe
Confidence            9999999976 6789999986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.5e-17  Score=139.10  Aligned_cols=117  Identities=23%  Similarity=0.368  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+++.|+.++..|+|++|+..|+++|+++|.+..    +|.++|.||+.+  |+|++|+..|+++++++|+++.+|+
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~   76 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR----GYSNRAAALAKL--MSFPEAIADCNKAIEKDPNFVRAYI   76 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4678999999999999999999999999999999875    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKE------PKNIMAAEIAERVKKEL  166 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~------P~n~~a~~~La~l~~~l  166 (429)
                      ++|.+|..+|++++|+.+|++++.++      |++..++..+..+...+
T Consensus        77 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           77 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999      99999999999887653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=1.8e-17  Score=141.27  Aligned_cols=115  Identities=23%  Similarity=0.342  Sum_probs=103.3

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--  118 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--  118 (429)
                      ..+.|..++++|+.+|+.|+|++|+..|++||+++|.+..    +|+|+|.||+.+  |+|++|+.+|++||+++|++  
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~----~~~nlg~~~~~~--~~~~~A~~~~~~al~~~~~~~~   77 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT----FYNNKAAVYFEE--KKFAECVQFCEKAVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHhHHHHHHHh--hhHHHHHHHHHHHHHhCcccch
Confidence            3467889999999999999999999999999999999874    999999999999  99999999999999999875  


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213          119 -----SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus       119 -----~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                           ..+|+++|.+|..+|++++|+.+|+++|.+.|+ +.....+..+
T Consensus        78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence                 468999999999999999999999999999885 5555554443

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=99.75  E-value=2.1e-18  Score=142.51  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=69.9

Q ss_pred             ceeEEEEeC--------CceEEEEccCCccHHHHHHHHHhhCCCC------CceEEEEECCCCCEEEecChHHHHHHHHh
Q 014213          261 KKTVKLVFG--------EDIRVAQLPLNSSLLQLREVISDRFPSC------RAVLIKYRDEEGDLVTITTDEELRWAEAS  326 (429)
Q Consensus       261 ~~~vK~~~~--------~DiR~~~i~~~~~~~~L~~~v~~kf~~~------~~~~iky~DedgDliti~~~~dl~~a~~~  326 (429)
                      .+.|||+|+        +|+|.++||.+++|.+|.++|++||...      +.++|||+|||||+|||.||+||+||+++
T Consensus         5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~   84 (98)
T 1q1o_A            5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM   84 (98)
T ss_dssp             CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred             cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence            489999999        8899999999999999999999999532      56899999999999999999999999998


Q ss_pred             hcc--CCcEEEEE
Q 014213          327 AEM--QGSVRLFV  337 (429)
Q Consensus       327 ~~~--~~~~rl~v  337 (429)
                      +++  .|.|+|||
T Consensus        85 ~~e~~~~~l~Iwv   97 (98)
T 1q1o_A           85 LAENNEKFLNIRL   97 (98)
T ss_dssp             HHHTTCCEEEEEE
T ss_pred             HHhhhcCeEEEEE
Confidence            643  58899998

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=99.73  E-value=1.6e-17  Score=135.55  Aligned_cols=80  Identities=24%  Similarity=0.263  Sum_probs=71.3

Q ss_pred             CCceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC--CceEEEEECCCCCEEEecChHHHHHHHHhhcc--CCcEE
Q 014213          259 EPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC--RAVLIKYRDEEGDLVTITTDEELRWAEASAEM--QGSVR  334 (429)
Q Consensus       259 ~~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~--~~~~iky~DedgDliti~~~~dl~~a~~~~~~--~~~~r  334 (429)
                      ...++||++|.+|||++.+|.+++|.+|.++|++.|+..  .+|+|||+|||||+|||+||+||.+|+.+...  ...+.
T Consensus         4 ~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~~l~   83 (89)
T 1vd2_A            4 GSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELL   83 (89)
T ss_dssp             SSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCCCEE
T ss_pred             CCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCCCEE
Confidence            346899999999999999999999999999999999764  66999999999999999999999999998743  34577


Q ss_pred             EEEE
Q 014213          335 LFVV  338 (429)
Q Consensus       335 l~v~  338 (429)
                      |+|.
T Consensus        84 ihvf   87 (89)
T 1vd2_A           84 IHVF   87 (89)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            7775

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.73  E-value=7.7e-17  Score=141.24  Aligned_cols=122  Identities=26%  Similarity=0.278  Sum_probs=112.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+...|+.++..|+|++|+..|+++|+++|.+..    +|+++|.||+.+  |+|++|+..|+++++++|++..+|
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~   82 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI----YLSNRAAAYSAS--GQHEKAAEDAELATVVDPKYSKAW   82 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34678999999999999999999999999999999874    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHhhc
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIM--AAEIAERVKKELEKRG  170 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~--a~~~La~l~~~l~e~~  170 (429)
                      +++|.+|..+|++++|+.+|++++.++|++..  ....+..++..+.+..
T Consensus        83 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           83 SRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999977  6666677777776543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.71  E-value=5.5e-16  Score=139.90  Aligned_cols=143  Identities=23%  Similarity=0.321  Sum_probs=125.2

Q ss_pred             CCCCCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc------------HHHHHHHHHHHHH
Q 014213           27 GEHSPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID------------VSYLRSNMAACYM   94 (429)
Q Consensus        27 ~~~~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~------------~a~l~~nrA~~y~   94 (429)
                      .....+.++.+.  .+..+..++..|+.++..|+|++|+..|.+|+.+.|.++..            ...++.++|.||+
T Consensus        22 ~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~   99 (198)
T 2fbn_A           22 AKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN   99 (198)
T ss_dssp             CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555444  44889999999999999999999999999999999987610            1258999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccc
Q 014213           95 QMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRV  173 (429)
Q Consensus        95 kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~  173 (429)
                      .+  |+|++|+..|++++.++|++..+++++|.+|..+|++++|+.+|++++.++|++..++..++.++..+++...+.
T Consensus       100 ~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          100 KN--KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             HT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             Hh--cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99  999999999999999999999999999999999999999999999999999999999999999999987665543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.70  E-value=4e-16  Score=138.52  Aligned_cols=104  Identities=13%  Similarity=0.053  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..+++.|+|++|+..|++++.++|.++.    +|.++|.||..+  |+|++|+..|++|+.++|+++.+|+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~----~~~~lg~~~~~~--g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD----YIMGLAAIYQIK--EQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHH--ccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            3467999999999999999999999999999999985    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                      ++|.||..+|++++|+.+|++++.+.|+.+
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999875

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.69  E-value=1.5e-16  Score=139.25  Aligned_cols=117  Identities=12%  Similarity=0.004  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..|++.|+|++|+..|++||+++|+++.    +|.++|.||..+  |++++|+..|+++++++|+++.+|+
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK----AHRFLGLLYELE--ENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CchHHHHHHHHHHHHhCCCCHHHHH
Confidence            3445778999999999999999999999999999885    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          124 KRARCYEALNRLDLAFRD-VTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~-~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      ++|.+|..+|++++|... +++|++++|+++.++..++++....
T Consensus       104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            999999999999887765 5899999999999998888876543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.68  E-value=7.8e-16  Score=134.67  Aligned_cols=119  Identities=17%  Similarity=0.130  Sum_probs=110.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..++..|+|++|+..|.+++.++|.++.    +|.++|.||..+  |+|++|+..|++++.++|+++.+++
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR----FFLGLGACRQAM--GQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCchHHH
Confidence            3567889999999999999999999999999999885    899999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      ++|.+|..+|++++|+..|++++.++|+++.......++...+..
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  138 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA  138 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999998887777777766654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.67  E-value=8.7e-16  Score=132.04  Aligned_cols=118  Identities=16%  Similarity=0.120  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|.+++.++|.+..    +|.++|.||+.+  |+|++|+..|++++.++|+++.+++.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~   91 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR----YFLGLGACRQSL--GLYEQALQSYSYGALMDINEPRFPFH   91 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            456889999999999999999999999999999885    899999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      +|.+|..+|++++|+..|++++.++|+++.......++...+..
T Consensus        92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  135 (142)
T 2xcb_A           92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA  135 (142)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999998888777777766653

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.67  E-value=1.5e-15  Score=150.37  Aligned_cols=131  Identities=27%  Similarity=0.339  Sum_probs=120.5

Q ss_pred             HHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 014213           40 VFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-----------DVSYLRSNMAACYMQMGLSEYPRAIHEC  108 (429)
Q Consensus        40 ~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-----------~~a~l~~nrA~~y~kl~~g~y~eAi~~~  108 (429)
                      .....+..++..|+.++..|+|++|+..|++||.++|.+..           ..+.+|+|+|.||+++  |+|++|+..|
T Consensus       142 ~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~~  219 (336)
T 1p5q_A          142 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL--QAFSAAIESC  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHH
Confidence            34467889999999999999999999999999999998840           1136999999999999  9999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccc
Q 014213          109 NLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       109 ~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a  172 (429)
                      ++||+++|++..+|+++|.+|..+|++++|+.+|++++.++|++..++..++.++..+++...+
T Consensus       220 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          220 NKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998876554

>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A

Probab=99.66  E-value=6e-17  Score=128.81  Aligned_cols=68  Identities=21%  Similarity=0.275  Sum_probs=62.1

Q ss_pred             CceEEEEccCCccHHHHHHHHHhhCCCC------CceEEEEECCCCCEEEecChHHHHHHHHhhc--cCCcEEEEE
Q 014213          270 EDIRVAQLPLNSSLLQLREVISDRFPSC------RAVLIKYRDEEGDLVTITTDEELRWAEASAE--MQGSVRLFV  337 (429)
Q Consensus       270 ~DiR~~~i~~~~~~~~L~~~v~~kf~~~------~~~~iky~DedgDliti~~~~dl~~a~~~~~--~~~~~rl~v  337 (429)
                      .|+|.++||++++|.+|.++|++||...      +.++|||+|||||+|||.||+||+||+++++  .+|.|+|||
T Consensus         1 ~D~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~~~~~~~~leiWv   76 (77)
T 1pqs_A            1 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLNIRL   76 (77)
T ss_dssp             CCEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHHHHCCCEEEEEC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHHHhhhcCeEEEEE
Confidence            4899999999999999999999999743      7799999999999999999999999999763  368899997

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.66  E-value=8.5e-16  Score=158.68  Aligned_cols=133  Identities=23%  Similarity=0.311  Sum_probs=117.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 014213           39 EVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-----------DVSYLRSNMAACYMQMGLSEYPRAIHE  107 (429)
Q Consensus        39 ~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-----------~~a~l~~nrA~~y~kl~~g~y~eAi~~  107 (429)
                      ......+..++++|+.+++.|+|++|+..|.+||.++|.+..           ....+|+|+|.||+++  ++|++|+..
T Consensus       262 ~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~~~  339 (457)
T 1kt0_A          262 KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL--REYTKAVEC  339 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh--cCHHHHHHH
Confidence            334578889999999999999999999999999999998741           1246999999999999  999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccc
Q 014213          108 CNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRV  173 (429)
Q Consensus       108 ~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~  173 (429)
                      |++||+++|++.++|+++|.+|..+|+|++|+.+|++|+.++|++..++..++.++..+++...+.
T Consensus       340 ~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          340 CDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999988765443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.65  E-value=2.8e-15  Score=125.58  Aligned_cols=118  Identities=26%  Similarity=0.339  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|.+++.++|.+..    +++++|.||+.+  |+|++|+..+++++.++|+++.+++.
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV----YYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH----HHHHHHHHHHHh--cCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            567999999999999999999999999999999874    999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHh
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPK-----NIMAAEIAERVKKELEK  168 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~-----n~~a~~~La~l~~~l~e  168 (429)
                      +|.+|..+|++++|+..|++++.++|+     +..+...+..+......
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~  131 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN  131 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998     78888888887776643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.65  E-value=8e-16  Score=168.59  Aligned_cols=148  Identities=16%  Similarity=0.184  Sum_probs=131.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..|.++|+.|.+.|+|++|+..|++||+++|++..    +|+|+|.+|.++  |+|++|+..|++||+++|++..+|
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~----a~~nLg~~l~~~--g~~~eA~~~~~~Al~l~P~~~~a~   80 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA----AHSNLASVLQQQ--GKLQEALMHYKEAIRISPTFADAY   80 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHH
Confidence            45678999999999999999999999999999999885    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc--cccCCCCCCCCCcccccchhhhhh
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT--VIELPPEYVEPPVTSIAPKVVKEK  200 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~--~~~L~p~~~~P~~~~~~a~v~k~~  200 (429)
                      +++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++...|+...  +.++.     |..+..+..++...
T Consensus        81 ~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-----P~~~~a~~~L~~~l  155 (723)
T 4gyw_A           81 SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-----PDFPDAYCNLAHCL  155 (723)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCChHHHhhhhhHH
Confidence            999999999999999999999999999999999999999999999888777744  44454     44445555555444


Q ss_pred             h
Q 014213          201 T  201 (429)
Q Consensus       201 ~  201 (429)
                      .
T Consensus       156 ~  156 (723)
T 4gyw_A          156 Q  156 (723)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-14  Score=122.45  Aligned_cols=116  Identities=36%  Similarity=0.519  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|++++++.|.+. ....++.++|.+|+.+  ++|++|+..|++++.++|++..+++.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-DQAVLHRNRAACHLKL--EDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-HHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            46789999999999999999999999999999752 2235899999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      +|.+|..+|++++|+..|++++.++|++..++..+..+.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999998888764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.64  E-value=9e-15  Score=117.41  Aligned_cols=116  Identities=31%  Similarity=0.422  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+...|..++..|+|++|+..|++++...|.+..    ++.++|.+|+.+  |+|++|+..+++++.++|.+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~   75 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV----LYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGY   75 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHhh--ccHHHHHHHHHHHHHhCcccHHHH
Confidence            35678999999999999999999999999999998874    899999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      +.+|.+|..+|++++|+..|++++.++|++..++..++.+..
T Consensus        76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           76 SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999999999999999999999999999998887753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.64  E-value=3.2e-15  Score=137.05  Aligned_cols=118  Identities=15%  Similarity=0.104  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHH----------------HHHHHHHcCCCCHHHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSN----------------MAACYMQMGLSEYPRAIHEC  108 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~n----------------rA~~y~kl~~g~y~eAi~~~  108 (429)
                      +..+..+|..++..|+|++|+..|+++++++|.+..    +|++                +|.+|..+  |+|++|+..|
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~   77 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE----MYYWTNVDKNSEISSKLATELALAYKKN--RNYDKAYLFY   77 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH----HHHHHHSCTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHhhhcchhhhhHHHHHHHHHHHHHC--CCHHHHHHHH
Confidence            567889999999999999999999999999998775    7777                99999999  9999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          109 NLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       109 ~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      +++++++|+++.+|+.+|.+|..+|++++|+.+|++++.++|++..++..++.++...++
T Consensus        78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999999999999999876654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.63  E-value=8e-15  Score=120.78  Aligned_cols=117  Identities=27%  Similarity=0.410  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|++++.+.|.+..    ++.++|.+|+.+  +++++|+..+++++.++|.+..+++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK----LYSNRAACYTKL--LEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH----HHHHHHHHHTTT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            357999999999999999999999999999998874    899999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      +|.+|..+|++++|+..|++++.++|++..++..++.++..++
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999998887553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.62  E-value=3.3e-15  Score=150.74  Aligned_cols=134  Identities=25%  Similarity=0.414  Sum_probs=119.3

Q ss_pred             hHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------CccHHHHHHHHHHHHHHcCCCCHHHHH
Q 014213           38 TEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN------------HIDVSYLRSNMAACYMQMGLSEYPRAI  105 (429)
Q Consensus        38 ~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~------------~~~~a~l~~nrA~~y~kl~~g~y~eAi  105 (429)
                      ....+..+..++..|+.++..|+|++|+..|++||++.+..            .+....+|+|+|.||+++  ++|++|+
T Consensus       216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--g~~~~A~  293 (370)
T 1ihg_A          216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM--SDWQGAV  293 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHH
Confidence            34456889999999999999999999999999999944331            112346999999999999  9999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccc
Q 014213          106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRV  173 (429)
Q Consensus       106 ~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~  173 (429)
                      ..|++||+++|++.++|+++|.+|..+|++++|+.+|++|+.++|++..++..++.++..+++...+.
T Consensus       294 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          294 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999887665543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.62  E-value=2.6e-14  Score=116.54  Aligned_cols=120  Identities=27%  Similarity=0.380  Sum_probs=113.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+...|..++..|+|++|+..|.+++...|.+..    ++.++|.+|..+  |++++|+..+.+++.++|++..++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A           10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV----YFCNRAAAYSKL--GNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHh--hchHHHHHHHHHHHhcCccCHHHH
Confidence            45678999999999999999999999999999998864    899999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      +.+|.+|..+|++++|+..|++++.++|++..++..++.++..+++
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999887754

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.61  E-value=3.2e-14  Score=121.93  Aligned_cols=126  Identities=25%  Similarity=0.355  Sum_probs=114.1

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      +..+..+...|..++..|+|++|+..|.+++.+.|.+..    ++.++|.+|+.+  |+|++|+..+.+++.++|.+..+
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~   83 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI----YYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKG   83 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHH
Confidence            478899999999999999999999999999999998874    899999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHHhhcccc
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV--KKELEKRGLRV  173 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l--~~~l~e~~~a~  173 (429)
                      ++.+|.+|..+|++++|+..|++++.++|++..++..+..+  +...++...++
T Consensus        84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~  137 (166)
T 1a17_A           84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI  137 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988666666  44444444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=6.1e-15  Score=130.25  Aligned_cols=150  Identities=14%  Similarity=0.094  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..|.+.|+.++..|+|++|+..|++||+++|++..    ++.++|.+|+.+  |++++|+..+.+++..+|.+..+++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~   77 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE----TLLKLGKTYMDI--GLPNDAIESLKKFVVLDTTSAEAYY   77 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHhcCchhHHHHH
Confidence            3456899999999999999999999999999999885    899999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhhhhhhh
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKEKTK  202 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~k~~~~  202 (429)
                      .+|.++...++++.|+..+.+++.++|++..++..++.++..+++...|+......+.   ..|..+..+..++....+
T Consensus        78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS---IKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH---hcchhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988888877777663333332   234444555555554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.61  E-value=1.6e-16  Score=139.05  Aligned_cols=126  Identities=16%  Similarity=0.036  Sum_probs=111.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYE  130 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~  130 (429)
                      +|..+..+|+++.|+..|.+++...|.++.    .++++|.+|+++  |+|++|+..|+++|+++|+++.+|+.+|.+|.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~----~~~~la~~y~~~--~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   76 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSI----KGFYFAKLYYEA--KEYDLAKKYICTYINVQERDPKAHRFLGLLYE   76 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHT----THHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            578888999999999999999999887764    888999999999  99999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc---cccccCCC
Q 014213          131 ALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN---DTVIELPP  182 (429)
Q Consensus       131 ~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~---e~~~~L~p  182 (429)
                      .+|++++|+.+|++++.++|+++.++..++.++..+++...+..   +++..++|
T Consensus        77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A           77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP  131 (150)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred             HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999999999999999987654433   45666764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=6.5e-15  Score=134.75  Aligned_cols=144  Identities=16%  Similarity=0.166  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLP-RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P-~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      ..++..|..++..|+|++|+..|++++++.| .+.    .+++++|.||+.+  |+|++|+..|++++.++|.+..+|+.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~   81 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNI--KKYKEAADYFDIAIKKNYNLANAYIG   81 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCSHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHh--hcHHHHHHHHHHHHHhCcchHHHHHH
Confidence            5689999999999999999999999999998 666    4788899999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHhhccccccccccCCCCCCCCC--cccccch
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNI-------MAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPP--VTSIAPK  195 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~-------~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~--~~~~~a~  195 (429)
                      +|.+|..+|++++|+..|++++.++|++.       .++..++.++..+++...+.......+.   ..|.  .+..+..
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~  158 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS  158 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence            99999999999999999999999999999       5577777777777777777664444443   3344  3344444


Q ss_pred             hhh
Q 014213          196 VVK  198 (429)
Q Consensus       196 v~k  198 (429)
                      ++.
T Consensus       159 l~~  161 (228)
T 4i17_A          159 LGV  161 (228)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=99.60  E-value=3.3e-15  Score=120.53  Aligned_cols=77  Identities=30%  Similarity=0.402  Sum_probs=69.9

Q ss_pred             CceeEEEEeCCceEEEEccCC--ccHHHHHHHHHhhCCCC-CceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEE
Q 014213          260 PKKTVKLVFGEDIRVAQLPLN--SSLLQLREVISDRFPSC-RAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLF  336 (429)
Q Consensus       260 ~~~~vK~~~~~DiR~~~i~~~--~~~~~L~~~v~~kf~~~-~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~  336 (429)
                      ..+.||..|+.|+|||.|+.+  .+|.+|...|+..|+.. .+|.|.|.|+|||||||++||+|.+|++++.+  .+||+
T Consensus         5 ~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~p--lLRl~   82 (86)
T 1wmh_B            5 SIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPP--PLRLL   82 (86)
T ss_dssp             CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSSSS--CEEEE
T ss_pred             CEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeecCHHHHHHHHHhCCC--cEEEE
Confidence            468899999999999999866  89999999999999732 26999999999999999999999999999854  89999


Q ss_pred             EE
Q 014213          337 VV  338 (429)
Q Consensus       337 v~  338 (429)
                      |+
T Consensus        83 Iq   84 (86)
T 1wmh_B           83 VQ   84 (86)
T ss_dssp             EE
T ss_pred             EE
Confidence            97

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.60  E-value=6.7e-15  Score=135.75  Aligned_cols=125  Identities=19%  Similarity=0.154  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|+|++|+..|+++|.++|.+..    ++.++|.+|.++  |++++|+..++++++++|++..+++.+
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~l   79 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPE----ALYWLARTQLKL--GLVNPALENGKTLVARTPRYLGGYMVL   79 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            45888999999999999999999999999999885    899999999999  999999999999999999999999999


Q ss_pred             HHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc
Q 014213          126 ARCYEAL-----------NRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT  176 (429)
Q Consensus       126 A~ay~~L-----------G~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~  176 (429)
                      |.+|..+           |++++|+..|++++.++|++..++..++.++..+++...+....
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~  141 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASL  141 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHH
Confidence            9999999           99999999999999999999999999999999988877776633

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.60  E-value=3.4e-15  Score=151.70  Aligned_cols=150  Identities=13%  Similarity=0.020  Sum_probs=131.6

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCCCHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE-YPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~-y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ..+..+...|..++..|+|++|+..|++||.++|.+..    +|+++|.+|..+  |+ |++|+..|++||+++|++..+
T Consensus        95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~----a~~~~g~~l~~~--g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT----VWHFRRVLLKSL--QKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH----HHHHHHHHHHHc--ccCHHHHHHHHHHHHHHCCCCHHH
Confidence            45677999999999999999999999999999999885    999999999999  96 999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhhhhhh
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKEKT  201 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~k~~~  201 (429)
                      |+++|.+|..+|++++|+.+|++||.++|++..++..++.++..+++...++......|.   ..|.....|..++....
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~  245 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVIS  245 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988877774433332   23455556655554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.58  E-value=2e-15  Score=149.81  Aligned_cols=128  Identities=24%  Similarity=0.384  Sum_probs=98.6

Q ss_pred             hHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-------------cHHHHHHHHHHHHHHcCCCCHHHH
Q 014213           38 TEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-------------DVSYLRSNMAACYMQMGLSEYPRA  104 (429)
Q Consensus        38 ~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-------------~~a~l~~nrA~~y~kl~~g~y~eA  104 (429)
                      ....+..+..++.+|+.++..|+|++|+..|.+||.+.|.+..             ....+|+|+|.||+++  ++|++|
T Consensus       172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~--g~~~~A  249 (338)
T 2if4_A          172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL--KRYDEA  249 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT--TCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc--CCHHHH
Confidence            3445688999999999999999999999999999999997541             0013899999999999  999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       105 i~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      +..|+++|+++|++.++|+++|.+|..+|+|++|+.+|++++.++|++..++..+..+.....
T Consensus       250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~  312 (338)
T 2if4_A          250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK  312 (338)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998865553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.58  E-value=1.1e-14  Score=123.14  Aligned_cols=102  Identities=16%  Similarity=0.081  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .+...|..++..|++++|+..|+++++++|.+..    +|.++|.+|..+  |++++|+..|++|++++|++..+++.+|
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~la   92 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE----AWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALA   92 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4778999999999999999999999999999885    999999999999  9999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                      .+|..+|++++|+..|++++.++|++..
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           93 VSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999998753

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.58  E-value=5.4e-14  Score=114.87  Aligned_cols=119  Identities=25%  Similarity=0.319  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-----
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY-----  118 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~-----  118 (429)
                      .+..+...|..++..|+|++|+..|.+++.+.|.+..    ++.++|.+|+.+  |+|++|+..+++++.+.|.+     
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~   76 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT----YITNQAAVYFEK--GDYNKCRELCEKAIEVGRENREDYR   76 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH----HHHHHHHHHHHh--ccHHHHHHHHHHHHhhccccchhHH
Confidence            4678999999999999999999999999999998874    899999999999  99999999999999999887     


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213          119 --SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus       119 --~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                        ..+++.+|.+|..+|++++|+..|++++.+.| +..+...+..+...+++.
T Consensus        77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence              99999999999999999999999999999999 688999999988877653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.58  E-value=5.8e-14  Score=116.29  Aligned_cols=117  Identities=14%  Similarity=0.058  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKAL  122 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl  122 (429)
                      ..+...|..++..|+|++|+..|.+++...|.+. ....++.++|.+|+.+  |+|++|+..|++++..+|++   ..++
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~~~lg~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGV-YTPNALYWLGESYYAT--RNFQLAEAQFRDLVSRYPTHDKAAGGL   79 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSST-THHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCc-ccHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHCCCCcccHHHH
Confidence            3577899999999999999999999999999876 2334889999999999  99999999999999999999   8999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      +.+|.+|..+|++++|+..|++++...|++..+......+...
T Consensus        80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888777776543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.57  E-value=2.6e-14  Score=156.67  Aligned_cols=125  Identities=17%  Similarity=0.128  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+.++|+.|++.|+|++|+..|++||+++|++..    +|+|+|.+|..+  |++++|+..|++||+++|++..+|+
T Consensus        42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~----a~~nLg~~l~~~--g~~~~A~~~~~kAl~l~P~~~~a~~  115 (723)
T 4gyw_A           42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD----AYSNMGNTLKEM--QDVQGALQCYTRAIQINPAFADAHS  115 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3566889999999999999999999999999999885    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++...+..
T Consensus       116 ~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A          116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence            999999999999999999999999999999999999999998887655544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.55  E-value=2.7e-13  Score=109.48  Aligned_cols=116  Identities=25%  Similarity=0.323  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|++++|+..|.+++...|.+..    ++.++|.+|..+  |++++|+..+++++.++|.+..+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~   82 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE----AWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYN   82 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH----HHHHHHHHHHHh--CCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            466889999999999999999999999999998764    889999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      +|.+|..+|++++|+..|++++.++|++..++..++.++..+
T Consensus        83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999998887654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.55  E-value=5.3e-14  Score=129.71  Aligned_cols=123  Identities=17%  Similarity=0.072  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 014213           45 SQELKEEGNKLFQK-----------RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE  113 (429)
Q Consensus        45 A~~lk~~Gn~lf~~-----------gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe  113 (429)
                      +..+...|..++..           |++++|+..|++|++++|.+..    ++.++|.+|..+  |++++|+..|+++++
T Consensus        73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~  146 (217)
T 2pl2_A           73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP----LHLQRGLVYALL--GERDKAEASLKQALA  146 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHc--CChHHHHHHHHHHHh
Confidence            34678899999999           9999999999999999999885    999999999999  999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          114 VTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       114 ldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ++ +++.+++.+|.+|..+|++++|+..|++++.++|+++.++..++.++..+++...+..
T Consensus       147 ~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          147 LE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             HC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred             cc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence            99 9999999999999999999999999999999999999999999999988887776655

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=1.1e-14  Score=148.00  Aligned_cols=119  Identities=9%  Similarity=-0.039  Sum_probs=113.0

Q ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           44 MSQELKEEGNKLFQKRD-HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gd-yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      .+..|..+|..++..|+ |++|+..|++||.++|++..    +|+++|.+|..+  |+|++|+..|++||+++|++..+|
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~----a~~~~g~~~~~~--g~~~eAl~~~~kal~ldP~~~~a~  203 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ----VWHHRRVLVEWL--RDPSQELEFIADILNQDAKNYHAW  203 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHHhCccCHHHH
Confidence            35568899999999997 99999999999999999985    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      +++|.+|..+|++++|+.+|+++|.++|++..++..++.++..+..
T Consensus       204 ~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          204 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999988543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.53  E-value=1.8e-13  Score=120.68  Aligned_cols=131  Identities=16%  Similarity=0.145  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|++++|+..|.+++...|.+..    ++.++|.++...  ++++.|+..+.+++.++|.+..+++.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~a~~~~~~a~~~~~~~~~~~~~  112 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE----AYYILGSANFMI--DEKQAAIDALQRAIALNTVYADAYYK  112 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCccchHHHHH
Confidence            456889999999999999999999999999999875    889999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      +|.+|..+|++++|+..|++++.++|++..++..++.++..+++...|..  .++.+++
T Consensus       113 lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          113 LGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999998877777  4445554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.51  E-value=1.2e-13  Score=132.99  Aligned_cols=102  Identities=28%  Similarity=0.423  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..++..|+.++..|+|++|+..|++|+.++|.+..    +++++|.+|+.+  |+|++|+..|++|++++|++..++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~   77 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV----YYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFF   77 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH----HHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            567999999999999999999999999999998874    999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      +|.+|..+|++++|+.+|++++.++|++
T Consensus        78 lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           78 LGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999976

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.50  E-value=4.2e-14  Score=147.12  Aligned_cols=126  Identities=25%  Similarity=0.347  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.+..+...|+.++..|+|++|+..|++|++++|.+..    +|.++|.+|+++  |+|++|+..|++|++++|++..+|
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~l~p~~~~~~   77 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI----YYGNRSLAYLRT--ECYGYALGDATRAIELDKKYIKGY   77 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH----HHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCCHHHH
Confidence            45677888999999999999999999999999999874    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHHhhccccc
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV--KKELEKRGLRVN  174 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l--~~~l~e~~~a~~  174 (429)
                      +++|.+|..+|++++|+..|+++++++|++..++..++.+  +...++...|..
T Consensus        78 ~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~  131 (477)
T 1wao_1           78 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  131 (477)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999988  555566666555

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.50  E-value=1.1e-13  Score=126.44  Aligned_cols=118  Identities=12%  Similarity=-0.019  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH------
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS------  119 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~------  119 (429)
                      ..+...|..++..|+|++|+..|++|++++|.+..    ++.++|.+|..+  |+|++|+..++++++++|++.      
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~  116 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN----AYIGKSAAYRDM--KNNQEYIATLTEGIKAVPGNATIEKLY  116 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH----HHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            34667999999999999999999999999998774    899999999999  999999999999999999999      


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhh
Q 014213          120 -KALLKRARCYEALNRLDLAFRDVTTVLNKEPK--NIMAAEIAERVKKELEKR  169 (429)
Q Consensus       120 -kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~--n~~a~~~La~l~~~l~e~  169 (429)
                       .+|+.+|.++..+|++++|+..|++++.++|+  +..++..++.++..++..
T Consensus       117 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          117 AIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence             67999999999999999999999999999999  999999999999877765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.48  E-value=9.9e-14  Score=125.08  Aligned_cols=104  Identities=17%  Similarity=0.172  Sum_probs=94.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           57 QKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEY----------PRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        57 ~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y----------~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      +.+.|++|+..|++|++++|.+..    +|+|+|.+++.+  +++          ++|+..|++||+++|++..+|+++|
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~ae----a~~n~G~~l~~l--~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG   87 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDAD----NLTRWGGVLLEL--SQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--HHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHh--cccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence            446789999999999999999986    999999999998  775          5999999999999999999999999


Q ss_pred             HHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          127 RCYEALN-----------RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       127 ~ay~~LG-----------~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      .+|..+|           ++++|+.+|++|+.++|++..++..+..+.+..
T Consensus        88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~  138 (158)
T 1zu2_A           88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  138 (158)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             HHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence            9999885           899999999999999999999888887765543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.47  E-value=3.9e-13  Score=120.80  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+...|+.++..|+|++|+..|.+++  .| ++    .+++++|.+|+.+  |+|++|+..|++++.++|.+..+|
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~   74 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HS----RICFNIGCMYTIL--KNMTEAEKAFTRSINRDKHLAVAY   74 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-Ch----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCccchHHH
Confidence            456678999999999999999999999995  33 33    5899999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNI----------------MAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~----------------~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      +++|.+|..+|++++|+.+|++++.+.|.+.                .++..++.++..+++...+..  .++..+.
T Consensus        75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999988877                999999999999988777766  3444444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.45  E-value=1.7e-12  Score=118.79  Aligned_cols=90  Identities=14%  Similarity=0.016  Sum_probs=77.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYE  130 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~  130 (429)
                      .|..++..|+|++|+..|+++|+++|.+..    ++.++|.+|+.+  |++++|+..|+++++++|+++.+|+.+|.+|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVD----CLEACAEMQVCR--GQEKDALRMYEKILQLEADNLAANIFLGNYYY  133 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999885    999999999999  99999999999999999999999999998886


Q ss_pred             HcCC--HHHHHHHHHHHH
Q 014213          131 ALNR--LDLAFRDVTTVL  146 (429)
Q Consensus       131 ~LG~--~deAl~~~~kAL  146 (429)
                      ..|+  ...+...|.+++
T Consensus       134 ~~~~~~~~~~~~~~~~~~  151 (208)
T 3urz_A          134 LTAEQEKKKLETDYKKLS  151 (208)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             HHhHHHHHHHHHHHHHHh
Confidence            6543  233444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.45  E-value=1.5e-12  Score=114.53  Aligned_cols=115  Identities=21%  Similarity=0.181  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHH-HHHcCCCCH--HHHHHHHHHHHHhCCCCHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAAC-YMQMGLSEY--PRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~-y~kl~~g~y--~eAi~~~~~ALeldP~~~k  120 (429)
                      .+..+...|..++..|+|++|+..|.+++.++|.+..    ++.++|.+ |+..  |++  ++|+..+++++.++|.+..
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~l~~~~--~~~~~~~A~~~~~~al~~~p~~~~  116 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE----LYAALATVLYYQA--SQHMTAQTRAMIDKALALDSNEIT  116 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH----HHHHHHHHHHHHT--TTCCCHHHHHHHHHHHHHCTTCHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhCCCcHH
Confidence            3467889999999999999999999999999998874    88999999 8888  998  9999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          121 ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       121 Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      +++.+|.+|..+|++++|+..|++++.++|++......+..+..
T Consensus       117 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A          117 ALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            99999999999999999999999999999998766655555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.45  E-value=1.7e-12  Score=105.38  Aligned_cols=123  Identities=22%  Similarity=0.256  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|++++|+..|.+++...|.+.    .++.++|.++...  |++++|+..+++++...|.+..+++.+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l   75 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNL   75 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch----hHHHHHHHHHHHh--cCHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            4577889999999999999999999999999876    4888999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |.+|..+|++++|+..+++++.+.|.+..++..++.++..+++...+..
T Consensus        76 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  124 (136)
T 2fo7_A           76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE  124 (136)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence            9999999999999999999999999999999999998887776555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.44  E-value=5.7e-13  Score=106.02  Aligned_cols=101  Identities=14%  Similarity=0.099  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL--YSKALLK  124 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~--~~kAl~~  124 (429)
                      .+...|..++..|+|++|+..|++++++.|.+..    ++.++|.+|+.+  |+|++|+..++++++++|.  +..+++.
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK----YWLMKGKALYNL--ERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            4678899999999999999999999999998874    899999999999  9999999999999999999  9999999


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHhCCCCH
Q 014213          125 RARCYEAL-NRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       125 rA~ay~~L-G~~deAl~~~~kAL~l~P~n~  153 (429)
                      +|.+|..+ |++++|+.++++++...|++.
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            99999999 999999999999999999763

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.44  E-value=8.9e-14  Score=118.43  Aligned_cols=104  Identities=17%  Similarity=0.205  Sum_probs=93.3

Q ss_pred             HHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213           72 LKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus        72 Lel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      ..++|...    ..+.++|.+|++.  |+|++|+..|++||+++|.++.+|+++|.||..+|++++|+.+|++++.++|+
T Consensus         6 a~inP~~a----~~~~~~G~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~   79 (126)
T 4gco_A            6 AYINPELA----QEEKNKGNEYFKK--GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK   79 (126)
T ss_dssp             -CCCHHHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHCHHHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh
Confidence            34566544    5899999999999  99999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhhccccccc--cccCC
Q 014213          152 NIMAAEIAERVKKELEKRGLRVNDT--VIELP  181 (429)
Q Consensus       152 n~~a~~~La~l~~~l~e~~~a~~e~--~~~L~  181 (429)
                      +..++..++.++..+++...+....  +..++
T Consensus        80 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           80 FIKGYIRKAACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            9999999999999999888877744  44454

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.44  E-value=1.1e-13  Score=114.91  Aligned_cols=101  Identities=12%  Similarity=0.052  Sum_probs=87.7

Q ss_pred             HcCCHHHHHHHHHHHHHhC---CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213           57 QKRDHGGALLKYEKALKLL---PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN  133 (429)
Q Consensus        57 ~~gdyeeAl~~Y~kALel~---P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG  133 (429)
                      ..|+|++|+..|++||++.   |.+.    .++.++|.+|+.+  |+|++|+..++++++++|+++.+++.+|.+|..+|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~----~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g   75 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLA----ECYLGLGSTFRTL--GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG   75 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC
Confidence            4689999999999999994   5444    5899999999999  99999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213          134 RLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus       134 ~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      ++++|+..|++++.+.|+++.+......+.
T Consensus        76 ~~~~A~~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           76 RYEQGVELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999999999998766554443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.44  E-value=3.9e-12  Score=121.01  Aligned_cols=122  Identities=21%  Similarity=0.267  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ......|..++..|++++|+..|++++...|.+......++.++|.+|..+  |++++|+..|+++++++|+++.+++.+
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~  312 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD--EKPVEAIRICSEVLQMEPDNVNALKDR  312 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            345567999999999999999999999999997754455688899999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                      |.+|..+|++++|+..|++++.++|++..++..+..++..+++.
T Consensus       313 ~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999888653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.43  E-value=7.2e-13  Score=122.79  Aligned_cols=143  Identities=9%  Similarity=0.048  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CCC-HHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PLY-SKAL  122 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~~-~kAl  122 (429)
                      ..+...|..++..|+|++|+..|+++++.+|.+..    ++.++|.+|+.+  |+|++|+..++++++..  |.. ..+|
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~   77 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY----IYNRRAVCYYEL--AKYDLAQKDIETYFSKVNATKAKSADF   77 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST----THHHHHHHHHHT--TCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhccCchhHHHHHH
Confidence            34778899999999999999999999999998886    888899999999  99999999999999832  222 5568


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhh
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVV  197 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~  197 (429)
                      +.+|.+|..+|++++|+..|++++.++|++..++..++.++..+++...+.......+.   ..|.....+..++
T Consensus        78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~  149 (272)
T 3u4t_A           78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELG  149 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999998887777774444443   3455555555444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.43  E-value=4.3e-12  Score=109.17  Aligned_cols=123  Identities=14%  Similarity=0.136  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|++++|+..|.+++...|.+..    ++.++|.+|..+  |++++|+..+++++.++|.+..+++.+
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~  116 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK----VATVLGLTYVQV--QKYDLAVPLLIKVAEANPINFNVRFRL  116 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHh--cCHHHHHHHHHHHHhcCcHhHHHHHHH
Confidence            34666777777777777777777777777776653    667777777777  777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |.+|..+|++++|+..|++++.+.|.+..++..++.++..+++...+..
T Consensus       117 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A          117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777777777777777777777777777776665554444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.43  E-value=2e-13  Score=147.76  Aligned_cols=144  Identities=17%  Similarity=0.005  Sum_probs=127.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|+|++|+..|++|++++|.+..    +|+++|.+|+.+  |+|++|+..|++|++++|++..+|+++
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~~~~~l  507 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR----LVWYRAVAELLT--GDYDSATKHFTEVLDTFPGELAPKLAL  507 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCSHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            46788999999999999999999999999999885    999999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhhhh
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKE  199 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~k~  199 (429)
                      |.+|..+|++++ +.+|++|++++|++..++..++.++..+++...|.......+.   ..|.....+..++..
T Consensus       508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPP---TSRHFTTARLTSAVT  577 (681)
T ss_dssp             HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT---TSTTHHHHHHHHHHH
T ss_pred             HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc---cCcccHHHHHHHHHH
Confidence            999999999999 9999999999999999999999999999988888775544443   335444444444433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.43  E-value=3.9e-14  Score=125.62  Aligned_cols=110  Identities=7%  Similarity=-0.082  Sum_probs=100.8

Q ss_pred             HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213           66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV  145 (429)
Q Consensus        66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA  145 (429)
                      ..|.+++.++|.+..    +++++|.+++++  |+|++|+..|++++.++|.++.+|+.+|.+|..+|+|++|+.+|+++
T Consensus        23 ~~l~~al~l~p~~~~----~~~~lg~~~~~~--g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           23 ATLKDINAIPDDMMD----DIYSYAYDFYNK--GRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             CCTGGGCCSCHHHHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHhCCCHHHHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            557888888998775    899999999999  99999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          146 LNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       146 L~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      +.++|+++.++..++.++..+++...|..  .++..+.
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999998888777  4444444

>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A

Probab=99.43  E-value=9.9e-13  Score=105.82  Aligned_cols=79  Identities=23%  Similarity=0.326  Sum_probs=71.4

Q ss_pred             CceeEEEEeCCceEEEEccC--CccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhcc-CCcEEEE
Q 014213          260 PKKTVKLVFGEDIRVAQLPL--NSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEM-QGSVRLF  336 (429)
Q Consensus       260 ~~~~vK~~~~~DiR~~~i~~--~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~-~~~~rl~  336 (429)
                      ..+++||+|.+|+++|.|.-  +.++.+|...|...|. +..|+|||.|||||.|+|+|+.|+..|+.++.. .+.|++.
T Consensus         5 ~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~-L~~~~ikY~DEenD~v~i~Sq~E~eEAlkva~k~~n~L~m~   83 (87)
T 2bkf_A            5 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-LNTIQIKYLDEENEEVSINSQGEYEEALKMAVKQGNQLQMQ   83 (87)
T ss_dssp             CCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT-CSSEEEEEECTTSCEEEECSHHHHHHHHHHHHHTTTEEEEE
T ss_pred             ceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcC-CCceEEEEEcCCCCEEEEecHHHHHHHHHHhccCCCEEEEE
Confidence            57899999999999988855  8999999999999995 569999999999999999999999999999876 5568888


Q ss_pred             EEe
Q 014213          337 VVG  339 (429)
Q Consensus       337 v~e  339 (429)
                      |.+
T Consensus        84 v~~   86 (87)
T 2bkf_A           84 VHE   86 (87)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            865

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.42  E-value=2.6e-12  Score=116.96  Aligned_cols=112  Identities=24%  Similarity=0.385  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|++++.+.|.+..    ++.++|.+|..+  |+|++|+..++++++++|++..+|+.
T Consensus       139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~  212 (258)
T 3uq3_A          139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR----GYSNRAAALAKL--MSFPEAIADCNKAIEKDPNFVRAYIR  212 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHh--CCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            345667777788888888888888888888777663    777788888777  78888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKE------PKNIMAAEIAERV  162 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~------P~n~~a~~~La~l  162 (429)
                      +|.+|..+|++++|+..|++++.++      |++..++..+.++
T Consensus       213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            8888888888888888888888877      7777776666554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.42  E-value=5.9e-13  Score=124.61  Aligned_cols=128  Identities=16%  Similarity=0.168  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKA  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kA  121 (429)
                      +..+...|..++..|+|++|+..|++++...|.++ ....+++++|.||+++  |+|++|+..|++++.+.|++   ..+
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~--~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQN--KEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            45789999999999999999999999999999873 2235899999999999  99999999999999998854   779


Q ss_pred             HHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHHHhhcccccc
Q 014213          122 LLKRARCYEA--------LNRLDLAFRDVTTVLNKEPKNIMAA-----------------EIAERVKKELEKRGLRVND  175 (429)
Q Consensus       122 l~~rA~ay~~--------LG~~deAl~~~~kAL~l~P~n~~a~-----------------~~La~l~~~l~e~~~a~~e  175 (429)
                      ++.+|.+|..        +|++++|+..|++++.+.|++..+.                 ..++.++..+++...++..
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  170 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT  170 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            9999999999        9999999999999999999987666                 5667888877777776663

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.42  E-value=5.7e-12  Score=114.73  Aligned_cols=128  Identities=16%  Similarity=0.185  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------------CCccHHHHHHHHHHHHHHcCCCCHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPR----------------------NHIDVSYLRSNMAACYMQMGLSEYP  102 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~----------------------~~~~~a~l~~nrA~~y~kl~~g~y~  102 (429)
                      +..+...|..++..|++++|+..|++++.+.|.                      ..+....++.++|.+|+.+  |+|+
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  156 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK--SDWP  156 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh--cCHH
Confidence            577889999999999999999999999997664                      2223456899999999999  9999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          103 RAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       103 eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|+..+++++.++|.+..+++.+|.+|..+|++++|+..|++++.++|++..++..++.++..+++...+..
T Consensus       157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999987766665

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.42  E-value=1e-12  Score=137.74  Aligned_cols=124  Identities=10%  Similarity=0.005  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|++|++++|.+..    ++.++|.+|..+  |+|++|+..|+++++++|++..+|++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~   96 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE----AVARLGRVRWTQ--QRHAEAAVLLQQASDAAPEHPGIALW   96 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            467899999999999999999999999999998874    999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---Hhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL---EKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l---~e~~~a~~  174 (429)
                      +|.+|..+|++++|+..|++++.++|++..++..++.++..+   ++...+..
T Consensus        97 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~  149 (568)
T 2vsy_A           97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSA  149 (568)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence            999999999999999999999999999999999999999999   77666655

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.40  E-value=4e-12  Score=122.70  Aligned_cols=121  Identities=16%  Similarity=0.084  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|+|++|+..|++++.+.|.+..    ++.++|.+|..+  |++++|+..|+++++++|.+..+++.+
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l  291 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL----LWNKLGATLANG--NQSEEAVAAYRRALELQPGYIRSRYNL  291 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            44555666666666666666666666666665543    566666666666  666666666666666666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHhhccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKN-----------IMAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n-----------~~a~~~La~l~~~l~e~~~a  172 (429)
                      |.+|..+|++++|+..|++++.+.|++           ..++..++.++..+++...+
T Consensus       292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            666666666666666666666666655           56666666666666554443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.40  E-value=4.2e-12  Score=115.10  Aligned_cols=124  Identities=15%  Similarity=0.029  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|++++|+..|.+++.+.|.+..    ++.++|.+|..+  |++++|+..++++++++|.+..+++.
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~la~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~  130 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSAAT----AYYGAGNVYVVK--EMYKEAKDMFEKALRAGMENGDLFYM  130 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH----HHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            456778899999999999999999999999988764    888899999998  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|..+|++++|+..|++++.+.|++..++..++.++..+++...+..
T Consensus       131 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999888887666655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.40  E-value=7.5e-12  Score=115.56  Aligned_cols=124  Identities=18%  Similarity=0.121  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..++..|+|++|+..|++++.+.|.+..    ++.++|.+|+.+  |+|++|+..+++++.++|.+..+++
T Consensus        42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~  115 (275)
T 1xnf_A           42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE----VFNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAHL  115 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHhcCccccHHHH
Confidence            4567889999999999999999999999999998874    899999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+|.+|..+|++++|+..|++++.++|++......+..+ ...++...+..
T Consensus       116 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~  165 (275)
T 1xnf_A          116 NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKE  165 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHH
Confidence            999999999999999999999999999998766655544 33454444444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.40  E-value=1.5e-12  Score=112.03  Aligned_cols=125  Identities=13%  Similarity=0.086  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..++..|++++|+..|++++...|.+.    .++.++|.+|+.+  |++++|+..+++++.++|.+..+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~   80 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----DVALHLGIAYVKT--GAVDRGTELLERSLADAPDNVKVAT   80 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            356788999999999999999999999999999876    4889999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+|.+|...|++++|+..|++++.+.|.+..++..++.++..+++...+..
T Consensus        81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  131 (186)
T 3as5_A           81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID  131 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence            999999999999999999999999999999999999999988887666655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.39  E-value=2.7e-12  Score=116.38  Aligned_cols=124  Identities=19%  Similarity=0.113  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|++++|+..|++++++.|.+..    ++.++|.+|+.+  |++++|+..+++++.++|.+..+++.
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~  164 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD----LFYMLGTVLVKL--EQPKLALPYLQRAVELNENDTEARFQ  164 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH----HHHHHHHHHHHT--SCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCccHHHHHH
Confidence            345678899999999999999999999999998874    899999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|..+|++++|+..|++++.+.|++..++..++.++..+++...+..
T Consensus       165 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  214 (243)
T 2q7f_A          165 FGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE  214 (243)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHH
Confidence            99999999999999999999999999999999999999999988777666

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.39  E-value=1.4e-12  Score=119.82  Aligned_cols=125  Identities=16%  Similarity=0.112  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..++..|+|++|+..|++++.+.|.+..    ++.++|.+|..+  |++++|+..++++++++|.+..+++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~  109 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD----AHAALAVVFQTE--MEPKLADEEYRKALASDSRNARVLN  109 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCcHHHHH
Confidence            3677899999999999999999999999999998764    889999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLN--KEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~--l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+|.+|..+|++++|+..|++++.  ..|.+..++..++.++..+++...+..
T Consensus       110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  162 (252)
T 2ho1_A          110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE  162 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999  888889999999999888877666655

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.39  E-value=1.9e-12  Score=123.15  Aligned_cols=124  Identities=19%  Similarity=0.184  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|++++..+|.+..    ++.++|.+|+.+  |+|++|+..+++++.++|++..+++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~   76 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI----AYYRRATVFLAM--GKSKAALPDLTKVIALKMDFTAARLQ   76 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcchHHHH
Confidence            467899999999999999999999999999998874    899999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHH------------HHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEP---KNIMAAEIAE------------RVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P---~n~~a~~~La------------~l~~~l~e~~~a~~  174 (429)
                      +|.+|..+|++++|+..|++++.++|   ++..++..+.            .++...++...+..
T Consensus        77 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  141 (359)
T 3ieg_A           77 RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT  141 (359)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            99999999999999999999999999   8888888774            45555555444444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.39  E-value=7.1e-13  Score=137.14  Aligned_cols=147  Identities=14%  Similarity=0.027  Sum_probs=124.5

Q ss_pred             HHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           44 MSQELKEEGNKLFQKRDH-GGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdy-eeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      .+..+...|..++..|+| ++|+..|++|++++|.+..    +|.++|.+|+.+  |+|++|+..|++|++++|+ ..++
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~-~~~~  173 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE----AWNQLGEVYWKK--GDVTSAHTCFSGALTHCKN-KVSL  173 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHTTCCC-HHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC-HHHH
Confidence            356688999999999999 9999999999999999875    999999999999  9999999999999999999 7999


Q ss_pred             HHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------Hhhccccccc--cccCCCC
Q 014213          123 LKRARCYEAL---------NRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL--------EKRGLRVNDT--VIELPPE  183 (429)
Q Consensus       123 ~~rA~ay~~L---------G~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l--------~e~~~a~~e~--~~~L~p~  183 (429)
                      +.+|.+|..+         |++++|+..|++++.++|++..++..++.++..+        ++...|....  +..+.| 
T Consensus       174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-  252 (474)
T 4abn_A          174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR-  252 (474)
T ss_dssp             HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG-
T ss_pred             HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC-
Confidence            9999999999         9999999999999999999999999999999988        7777766633  444432 


Q ss_pred             CCCCCcccccchhhhh
Q 014213          184 YVEPPVTSIAPKVVKE  199 (429)
Q Consensus       184 ~~~P~~~~~~a~v~k~  199 (429)
                       ..+..+..+..++..
T Consensus       253 -~~~~~~~~~~~lg~~  267 (474)
T 4abn_A          253 -KASSNPDLHLNRATL  267 (474)
T ss_dssp             -GGGGCHHHHHHHHHH
T ss_pred             -CcccCHHHHHHHHHH
Confidence             111444445444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.38  E-value=4e-12  Score=124.87  Aligned_cols=124  Identities=18%  Similarity=0.084  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..+...|++++|+..|++++.++|.+..    ++.++|.++..+  |++++|+..+.+++.++|++..+++.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~  242 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD----AYINLGNVLKEA--RIFDRAVAAYLRALSLSPNHAVVHGN  242 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTT--TCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence            445666666666666666666666666666665543    555555555555  55555555555555555555555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|..+|++++|+..|++++.++|+++.++..++.++..+++...+..
T Consensus       243 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  292 (388)
T 1w3b_A          243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED  292 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            55555555555555555555555555555555555555555544444333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.38  E-value=8e-12  Score=116.87  Aligned_cols=119  Identities=18%  Similarity=0.161  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHhCC
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQ--------MGLSEYPRAIHECNLALEVTP  116 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~k--------l~~g~y~eAi~~~~~ALeldP  116 (429)
                      +..+...|..++..|+|++|+..|++++.+.|.++ ....+++++|.||+.        +  |++++|+..|++++...|
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~~~~--~~~~~A~~~~~~~l~~~p  128 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-RVPQAEYERAMCYYKLSPPYELDQ--TDTRKAIEAFQLFIDRYP  128 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHCCCTTSCC--HHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-hhHHHHHHHHHHHHHhcccccccc--hhHHHHHHHHHHHHHHCc
Confidence            56788999999999999999999999999999775 345688999999999        8  999999999999999999


Q ss_pred             CCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Q 014213          117 LYSKAL-----------------LKRARCYEALNRLDLAFRDVTTVLNKEPK---NIMAAEIAERVKKEL  166 (429)
Q Consensus       117 ~~~kAl-----------------~~rA~ay~~LG~~deAl~~~~kAL~l~P~---n~~a~~~La~l~~~l  166 (429)
                      ++..++                 +.+|.+|..+|++++|+..|++++...|+   ...++..++.++..+
T Consensus       129 ~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          129 NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            986655                 89999999999999999999999999998   467899999999887

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.38  E-value=3e-12  Score=125.79  Aligned_cols=124  Identities=22%  Similarity=0.227  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..+...|++++|+..|.+++.+.|.+..    ++.++|.+|..+  |++++|+..++++++++|+++.+|+.
T Consensus       203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~  276 (388)
T 1w3b_A          203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV----VHGNLACVYYEQ--GLIDLAIDTYRRAIELQPHFPDAYCN  276 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            455667777777777777777777777777776653    667777777777  77777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|..+|++++|+..|++++.+.|++..++..++.++...++...+..
T Consensus       277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  326 (388)
T 1w3b_A          277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR  326 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            77777777777777777777777777777777777777766665555554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.38  E-value=5.3e-12  Score=113.34  Aligned_cols=104  Identities=13%  Similarity=0.027  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH-----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS-----  119 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~-----  119 (429)
                      +..+...|..++..|+|++|+..|++|+.++|.+..    +++++|.+|+.+  |+|++|+..|++++++.|.+.     
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~lg~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~  110 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV----AYFQRGMLYYQT--EKYDLAIKDLKEALIQLRGNQLIDYK  110 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH----HHHHHHHHHHHc--ccHHHHHHHHHHHHHhCCCccHHHHH
Confidence            357899999999999999999999999999998874    899999999999  999999999999999888776     


Q ss_pred             -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          120 -----------KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       120 -----------kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                                 .+++++|.+|..+|++++|+.+|++++.++|++..
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence                       99999999999999999999999999999997643

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.37  E-value=3.8e-12  Score=122.63  Aligned_cols=125  Identities=12%  Similarity=0.033  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-------------
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL-------------  110 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~-------------  110 (429)
                      .+..+...|..++..|++++|+..|++++.++|++..    ++.++|.+|+.+  |++++|+..+++             
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~~~~~--g~~~~A~~~l~~~~~~~p~~~~~~~  189 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE----IGLLLAETLIAL--NRSEDAEAVLXTIPLQDQDTRYQGL  189 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHHHT--TCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh----HHHHHHHHHHHC--CCHHHHHHHHHhCchhhcchHHHHH
Confidence            3466889999999999999999999999999999985    899999999999  999887655544             


Q ss_pred             ---------------------HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHH
Q 014213          111 ---------------------ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN--IMAAEIAERVKKELE  167 (429)
Q Consensus       111 ---------------------ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n--~~a~~~La~l~~~l~  167 (429)
                                           ++.++|++..+++.+|.+|...|++++|+..|++++.++|++  ..++..+..++..++
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence                                 466677777777777777777777777777777777777776  677777777777776


Q ss_pred             hhccccc
Q 014213          168 KRGLRVN  174 (429)
Q Consensus       168 e~~~a~~  174 (429)
                      +...+..
T Consensus       270 ~~~~a~~  276 (287)
T 3qou_A          270 TGDALAS  276 (287)
T ss_dssp             TTCHHHH
T ss_pred             CCCcHHH
Confidence            5544443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.37  E-value=7.6e-13  Score=116.41  Aligned_cols=126  Identities=11%  Similarity=0.136  Sum_probs=109.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARC-Y  129 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~a-y  129 (429)
                      .++.++..|+|++|+..|.+++..+|.+..    ++.++|.+|+.+  |+|++|+..|++++.++|.+..+++.+|.+ |
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~   89 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQNSE----QWALLGEYYLWQ--NDYSNSLLAYRQALQLRGENAELYAALATVLY   89 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCSCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            445567889999999999999999998874    899999999999  999999999999999999999999999999 8


Q ss_pred             HHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCCC
Q 014213          130 EALNRL--DLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPP  182 (429)
Q Consensus       130 ~~LG~~--deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p  182 (429)
                      ...|++  ++|+..|++++.++|++..++..++.++..+++...+..  ..+..+.|
T Consensus        90 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  146 (177)
T 2e2e_A           90 YQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS  146 (177)
T ss_dssp             HHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred             HhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence            899999  999999999999999999999999999999988777766  44455543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=5.6e-12  Score=112.40  Aligned_cols=125  Identities=18%  Similarity=0.093  Sum_probs=114.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..++..|++++|+..|.+++++.|.+..    ++..+|.+|..+  |++++|+..+++++.++|.+..+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~   80 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL----AWLVRAEIYQYL--KVNDKAQESFRQALSIKPDSAEINN   80 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH----HHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCChHHHH
Confidence            3467889999999999999999999999999998874    889999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          124 KRARCYEAL-NRLDLAFRDVTTVLN--KEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       124 ~rA~ay~~L-G~~deAl~~~~kAL~--l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+|.+|..+ |++++|+..|++++.  ..|.+..++..++.++..+++...+..
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  134 (225)
T 2vq2_A           81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA  134 (225)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999 999999999999999  677778999999999988887766655

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.36  E-value=3.6e-12  Score=123.94  Aligned_cols=101  Identities=22%  Similarity=0.171  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|+|++|+..|++++.++|.+..    ++.++|.+|..+  |+|++|+..|+++++++|++..+|+.+
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l  139 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE----AWQFLGITQAEN--ENEQAAIVALQRCLELQPNNLKALMAL  139 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            45788899999999999999999999999998874    889999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      |.+|..+|++++|+..|++++.+.|++
T Consensus       140 ~~~~~~~g~~~~A~~~~~~al~~~p~~  166 (365)
T 4eqf_A          140 AVSYTNTSHQQDACEALKNWIKQNPKY  166 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCHHH
T ss_pred             HHHHHccccHHHHHHHHHHHHHhCccc
Confidence            999999999999999888888877653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.36  E-value=4.1e-13  Score=107.93  Aligned_cols=92  Identities=26%  Similarity=0.368  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC------
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY------  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~------  118 (429)
                      +..+...|..++..|+|++|+..|++|++++|.+..    ++.++|.||+.+  |+|++|+..|+++++++|++      
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~   77 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV----GYSNKAMALIKL--GEYTQAIQMCQQGLRYTSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCccHHHHH
Confidence            345556666666666666666666666666665543    556666666666  66666666666666666665      


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHH
Q 014213          119 SKALLKRARCYEALNRLDLAFRDV  142 (429)
Q Consensus       119 ~kAl~~rA~ay~~LG~~deAl~~~  142 (429)
                      ..+++++|.++..+|+++.|+..+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHH
Confidence            556666666666666555554443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.36  E-value=6.3e-12  Score=118.66  Aligned_cols=123  Identities=15%  Similarity=0.062  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---------CCC
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT---------PLY  118 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld---------P~~  118 (429)
                      +...|..++..|++++|+..|++++.+.|.+.    .++.++|.+|..+  |+|++|+..+++++.+.         |.+
T Consensus       162 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  235 (330)
T 3hym_B          162 MLYIGLEYGLTNNSKLAERFFSQALSIAPEDP----FVMHEVGVVAFQN--GEWKTAEKWFLDALEKIKAIGNEVTVDKW  235 (330)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTTSCSCTTTTC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHc--ccHHHHHHHHHHHHHHhhhccccccccHH
Confidence            44566666666666666666666666666655    3667777777777  77777777777777765         556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc
Q 014213          119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT  176 (429)
Q Consensus       119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~  176 (429)
                      ..+++.+|.+|..+|++++|+..|++++.++|++..++..++.++..+++...+....
T Consensus       236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  293 (330)
T 3hym_B          236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYF  293 (330)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHH
Confidence            6677777777777777777777777777777777777777777777777666655533

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.36  E-value=4.4e-12  Score=123.29  Aligned_cols=124  Identities=17%  Similarity=0.075  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +..+...|..+...|++++|+..|++++.+.|.  +.    .++.++|.+|..+  |+|++|+..++++++++|++..+|
T Consensus       177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~----~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~  250 (365)
T 4eqf_A          177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP----DLQTGLGVLFHLS--GEFNRAIDAFNAALTVRPEDYSLW  250 (365)
T ss_dssp             ------------CCHHHHHHHHHHHHHHHHSCSSCCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCH----HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHH
Confidence            444556667777777777777777777777776  33    3666777777777  777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +.+|.+|..+|++++|+..|++++.++|++..++..++.++..+++...+..
T Consensus       251 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          251 NRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            7777777777777777777777777777777777777777776665555444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.36  E-value=1.6e-11  Score=122.05  Aligned_cols=124  Identities=22%  Similarity=0.260  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|++++|+..|++++.+.|.++.....++.++|.+|.++  |++++|+..|++++.++|++..+|+.+
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~p~~~~~~~~l  335 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD--EKPVEAIRVCSEVLQMEPDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            344666999999999999999999999999987654456889999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL  171 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~  171 (429)
                      |.+|..+|++++|+.+|++++.++|++..++..++.+...++....
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~  381 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQK  381 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999999999999999999888876443

>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=99.36  E-value=2.2e-12  Score=106.13  Aligned_cols=80  Identities=24%  Similarity=0.341  Sum_probs=72.7

Q ss_pred             CCceeEEEEeCCceEEEEcc--CCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhcc-CCcEEE
Q 014213          259 EPKKTVKLVFGEDIRVAQLP--LNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEM-QGSVRL  335 (429)
Q Consensus       259 ~~~~~vK~~~~~DiR~~~i~--~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~-~~~~rl  335 (429)
                      ...+++||+|.+|+++|.|.  .+.++.+|...|...|. +..|+|||.|||||.|+|+|++|+.+|+.++.. .+.|++
T Consensus        12 ~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~-L~~~~IkY~DEenD~V~i~Sq~E~eEAlkva~k~~n~L~m   90 (101)
T 1wj6_A           12 EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-LNTIQIKYLDEENEEVSINSQGEYEEALKMAVKQGNQLQM   90 (101)
T ss_dssp             CSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHC-CSSBCCEEECTTSCEECCCSHHHHHHHHHHHHHHTSEEEE
T ss_pred             CccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcC-CCceEEEEecCCCCEEEEecHHHHHHHHHHhccCCCEEEE
Confidence            57899999999999998884  48999999999999995 669999999999999999999999999999876 566888


Q ss_pred             EEEe
Q 014213          336 FVVG  339 (429)
Q Consensus       336 ~v~e  339 (429)
                      .|.+
T Consensus        91 ~V~~   94 (101)
T 1wj6_A           91 QVHE   94 (101)
T ss_dssp             ECCB
T ss_pred             EEee
Confidence            8876

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.36  E-value=5.2e-12  Score=125.59  Aligned_cols=114  Identities=21%  Similarity=0.226  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+...|..++..|+|++|+..|++++...|.+..    +++++|.+|+.+  |++++|+..++++++++|++..++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~   97 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI----AYYRRATVFLAM--GKSKAALPDLTKVIQLKMDFTAAR   97 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHhcCCCcHHHH
Confidence            34677999999999999999999999999999998874    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNI---MAAEIAERV  162 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~---~a~~~La~l  162 (429)
                      +.+|.+|..+|++++|+..|++++.++|++.   .++..+..+
T Consensus        98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            9999999999999999999999999999998   777666443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.35  E-value=3.8e-12  Score=117.45  Aligned_cols=110  Identities=14%  Similarity=0.202  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH---H
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK---A  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k---A  121 (429)
                      +..+...|..++..|+|++|+..|++++...|.++. ...+++++|.+|+++  |+|++|+..|+++++..|++..   +
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~a~~~lg~~~~~~--~~~~~A~~~~~~~l~~~P~~~~~~~a   80 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKN--ADLPLAQAAIDRFIRLNPTHPNIDYV   80 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHCcCCCcHHHH
Confidence            456889999999999999999999999999997652 235789999999999  9999999999999999999865   8


Q ss_pred             HHHHHHHHHH------------------cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213          122 LLKRARCYEA------------------LNRLDLAFRDVTTVLNKEPKNIMAAE  157 (429)
Q Consensus       122 l~~rA~ay~~------------------LG~~deAl~~~~kAL~l~P~n~~a~~  157 (429)
                      ++.+|.+|..                  +|++++|+..|++++...|++..+..
T Consensus        81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            9999999987                  57899999999999999999976653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.35  E-value=4.2e-13  Score=117.17  Aligned_cols=110  Identities=13%  Similarity=-0.036  Sum_probs=100.3

Q ss_pred             HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213           66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV  145 (429)
Q Consensus        66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA  145 (429)
                      ..|.+++.++|.+..    +++++|.+++..  |+|++|+..|++++.++|.++.+|+.+|.+|..+|++++|+.+|+++
T Consensus         8 ~~~~~al~~~p~~~~----~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A            8 GTIAMLNEISSDTLE----QLYSLAFNQYQS--GXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             CSHHHHTTCCHHHHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHhhHH----HHHHHHHHHHHc--CChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            568899999997764    889999999999  99999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          146 LNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       146 L~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      +.++|+++.++..++.++..+++...+..  .++..+.
T Consensus        82 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           82 AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            99999999999999999999998877776  3344454

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.35  E-value=1e-11  Score=113.98  Aligned_cols=124  Identities=13%  Similarity=-0.013  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hCCCCHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE--VTPLYSKAL  122 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe--ldP~~~kAl  122 (429)
                      +..+...|..++..|++++|+..|.+++.+.|.+..    ++.++|.+|..+  |++++|+..+++++.  ..|.+..++
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~  144 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR----VLNNYGGFLYEQ--KRYEEAYQRLLEASQDTLYPERSRVF  144 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHTTCTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH----HHHHHHHHHHHH--hHHHHHHHHHHHHHhCccCcccHHHH
Confidence            345678899999999999999999999999998764    899999999999  999999999999999  889999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +.+|.+|..+|++++|+..|++++.+.|.+..++..++.++..+++...+..
T Consensus       145 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  196 (252)
T 2ho1_A          145 ENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ  196 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999999999999999887776665

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.34  E-value=1.5e-11  Score=113.93  Aligned_cols=114  Identities=15%  Similarity=0.169  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +...|..++..|++++|+..|+++++++|.+..    ++.++|.+|+.+  |+|++|+..++++++++|.+..+++.+|.
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~  150 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD----MYGQIGSYFYNK--GNFPLAIQYMEKQIRPTTTDPKVFYELGQ  150 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHT--TCHHHHHHHHGGGCCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH----HHHHHHHHHHHc--cCHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence            344444444444444444444444444444442    444444444444  44444444444444444444444444442


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      .++..+++++|+..|++++.++|++..++..++.++..++
T Consensus       151 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~  190 (272)
T 3u4t_A          151 AYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD  190 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence            2222334444444444454444444444444444444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=5.6e-12  Score=130.38  Aligned_cols=125  Identities=12%  Similarity=0.030  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc------CCCCHHHHHHHHHH
Q 014213           46 QELKEEGNKLFQK---------RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM------GLSEYPRAIHECNL  110 (429)
Q Consensus        46 ~~lk~~Gn~lf~~---------gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl------~~g~y~eAi~~~~~  110 (429)
                      ..+...|..++..         |+|++|+..|++|++++|.+..    +|+++|.+|+.+      ..|+|++|+..|++
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~  246 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQ  246 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence            4678889999999         9999999999999999999885    899999999875      12689999999999


Q ss_pred             HHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          111 ALEVTP---LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       111 ALeldP---~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |++++|   .++.+|+++|.+|..+|++++|+.+|++++.++|++..++..++.++..+++...++.
T Consensus       247 al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          247 AEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999   9999999999999999999999999999999999999999999999999987766654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.33  E-value=1.8e-11  Score=115.33  Aligned_cols=124  Identities=16%  Similarity=0.192  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|++++|+..|.+++.+.|.+..    ++.++|.+|..+  |++++|+..++++++++|++..+++.
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~  245 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ----LWNKLGATLANG--NRPQEALDAYNRALDINPGYVRVMYN  245 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            455778899999999999999999999999998774    889999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPK------------NIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~------------n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|..+|++++|+..|++++.+.|+            +..++..++.++..+++...+..
T Consensus       246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  307 (327)
T 3cv0_A          246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL  307 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence            999999999999999999999999999            78899999999988877665544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.33  E-value=5.6e-12  Score=111.75  Aligned_cols=121  Identities=12%  Similarity=0.057  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .+...|..++..|++++|+..|++++.++|.+..    ++.++|.+|+.+  |++++|+..+++++.++| ++..+..++
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~~~~~--g~~~~A~~~~~~a~~~~p-~~~~~~~~~   80 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD----VKLAKADCLLET--KQFELAQELLATIPLEYQ-DNSYKSLIA   80 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH----HHHHHHHHHHHT--TCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHC--CCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence            3566777778888888888888888888887764    777788888877  777777777776666666 555444444


Q ss_pred             HHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          127 RCY-EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       127 ~ay-~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+. ...+....|+..|++++.++|++..++..++.++..+++...+..
T Consensus        81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~  129 (176)
T 2r5s_A           81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE  129 (176)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence            332 122223345666666666666666666666666666655555544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.32  E-value=1.9e-11  Score=100.30  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014213           62 GGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRD  141 (429)
Q Consensus        62 eeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~  141 (429)
                      +.|+..|.++++.+|.+..    +++++|.+|+.+  |+|++|+..|++++.++|.+..+|+.+|.+|..+|++++|+..
T Consensus         2 ~~a~~~~~~al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~   75 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNML----LRFTLGKTYAEH--EQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQA   75 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3688999999999998874    999999999999  9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCC--CHHHHHHHHHHHHHHHh
Q 014213          142 VTTVLNKEPK--NIMAAEIAERVKKELEK  168 (429)
Q Consensus       142 ~~kAL~l~P~--n~~a~~~La~l~~~l~e  168 (429)
                      |++++.+.|.  +..+...+..+...++.
T Consensus        76 ~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           76 WESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence            9999999884  55666666666666643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.30  E-value=1.4e-11  Score=118.50  Aligned_cols=127  Identities=12%  Similarity=0.016  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCCC----
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQ-MGLSEYPRAIHECNLALEVTPLY----  118 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~k-l~~g~y~eAi~~~~~ALeldP~~----  118 (429)
                      ..+.+.|+.|...|+|++|+.+|++|+.+.|....  ..+.++.++|.+|.. +  |+|++|+..|++|+++.|..    
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~l--g~~~~A~~~~~~Al~~~~~~~~~~  155 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL--HDYAKAIDCYELAGEWYAQDQSVA  155 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHhCCChH
Confidence            34445555555555555555555555555443221  123345555555555 4  55555555555555554432    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHHHhhccccc
Q 014213          119 --SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM-------AAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       119 --~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~-------a~~~La~l~~~l~e~~~a~~  174 (429)
                        ..+|.++|.+|..+|+|++|+.+|++++.+.|++..       ++..++.++..+++...+..
T Consensus       156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  220 (292)
T 1qqe_A          156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR  220 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence              334555555555555555555555555555554332       23444444444444433333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.30  E-value=2.8e-11  Score=114.24  Aligned_cols=122  Identities=15%  Similarity=-0.010  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           47 ELKEEGNKLFQKR-DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        47 ~lk~~Gn~lf~~g-dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      .+...|..++..| ++++|+..|++++.++|.+..    ++.++|.+|..+  |++++|+..+++++++.|.+..+++.+
T Consensus        92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l  165 (330)
T 3hym_B           92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP----AWIAYGHSFAVE--SEHDQAMAAYFTAAQLMKGCHLPMLYI  165 (330)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHHhccccHHHHHHH
Confidence            3555666666666 666666666666666666553    566666666666  666666666666666666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |.+|..+|++++|+..|++++.++|++..++..++.++..+++...+..
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence            6666666666666666666666666666666666666666554444433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.30  E-value=3.7e-11  Score=120.80  Aligned_cols=105  Identities=30%  Similarity=0.460  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.+..++..|+.+++.|+|++|+..|++++..+| +.    .++.++|.||+.+  |+|++|+..|+++++++|++..+|
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~----~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~   76 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DP----VFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVL   76 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cH----HHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHH
Confidence            5788999999999999999999999999999998 34    4899999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                      +.+|.+|..+|++++|+..|++++.+.|.+..
T Consensus        77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            99999999999999999999999999996644

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.29  E-value=8.5e-12  Score=135.04  Aligned_cols=137  Identities=12%  Similarity=-0.019  Sum_probs=118.2

Q ss_pred             HHcCCHHHHHHHHHHHH--------HhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           56 FQKRDHGGALLKYEKAL--------KLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        56 f~~gdyeeAl~~Y~kAL--------el~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +..|++++|+..|++++        ..+|.+..    ++.++|.+|+.+  |+|++|+..|+++++++|++..+|+.+|.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~----~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~  475 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVE----LPLMEVRALLDL--GDVAKATRKLDDLAERVGWRWRLVWYRAV  475 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchh----HHHHHHHHHHhc--CCHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence            78999999999999999        89999885    899999999999  99999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhhhhhhh
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKEKTK  202 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~k~~~~  202 (429)
                      +|..+|++++|+.+|++|++++|++..++..++.++..+++... .......+.   ..|.....+..++....+
T Consensus       476 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~  546 (681)
T 2pzi_A          476 AELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSA  546 (681)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998777 664433332   234444555555554443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.29  E-value=8.1e-11  Score=113.51  Aligned_cols=89  Identities=17%  Similarity=0.079  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      .++.++|.+|..+  |+|++|+..+++++.++|++..+|+.+|.+|..+|++++|+..|++++.++|++..++..++.++
T Consensus       218 ~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          218 DVQCGLGVLFNLS--GEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  295 (368)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3455555555555  56666666666666666655556666666666666666666666666666665555555555555


Q ss_pred             HHHHhhccccc
Q 014213          164 KELEKRGLRVN  174 (429)
Q Consensus       164 ~~l~e~~~a~~  174 (429)
                      ..+++...+..
T Consensus       296 ~~~g~~~~A~~  306 (368)
T 1fch_A          296 INLGAHREAVE  306 (368)
T ss_dssp             HHHTCHHHHHH
T ss_pred             HHCCCHHHHHH
Confidence            55554444433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.28  E-value=4.2e-11  Score=110.42  Aligned_cols=128  Identities=13%  Similarity=0.089  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc----------------CCCCHHHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM----------------GLSEYPRAIHECN  109 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl----------------~~g~y~eAi~~~~  109 (429)
                      ..+...|..++..|+|++|+..|++++++.|.+.. ...+++++|.+|+.+                ..|++++|+..|+
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  120 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS  120 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence            46888999999999999999999999999998763 334788899998862                1278999999999


Q ss_pred             HHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHhh
Q 014213          110 LALEVTPLYSKAL-----------------LKRARCYEALNRLDLAFRDVTTVLNKEPKNI---MAAEIAERVKKELEKR  169 (429)
Q Consensus       110 ~ALeldP~~~kAl-----------------~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~---~a~~~La~l~~~l~e~  169 (429)
                      ++++..|++..++                 +.+|.+|...|++++|+..|++++...|+++   .++..++.++..+++.
T Consensus       121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence            9999999987654                 6789999999999999999999999999986   6788899999999877


Q ss_pred             ccccc
Q 014213          170 GLRVN  174 (429)
Q Consensus       170 ~~a~~  174 (429)
                      ..+..
T Consensus       201 ~~A~~  205 (225)
T 2yhc_A          201 AQAEK  205 (225)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.26  E-value=9.4e-11  Score=94.98  Aligned_cols=101  Identities=26%  Similarity=0.367  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|++++|+..|.+++...|.+..    ++.++|.+|..+  |++++|+..+++++...|.+..+++.+
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l  109 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE----AWYNLGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYNL  109 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH----HHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45777899999999999999999999999998764    889999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      |.+|..+|++++|+..|++++.++|++
T Consensus       110 a~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          110 GNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999864

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.26  E-value=6.3e-11  Score=105.51  Aligned_cols=125  Identities=16%  Similarity=0.079  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hCCCCHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE--VTPLYSKAL  122 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe--ldP~~~kAl  122 (429)
                      +..+...|..++..|++++|+..|.+++.+.|.+..    ++.++|.+|..+ .|++++|+..++++++  ..|.+..++
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~  116 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE----INNNYGWFLCGR-LNRPAESMAYFDKALADPTYPTPYIAN  116 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTT-TCCHHHHHHHHHHHHTSTTCSCHHHHH
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHh-cCcHHHHHHHHHHHHcCcCCcchHHHH
Confidence            345566666666666666666666666666666553    566666666542 1566666666666666  445556666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +.+|.+|..+|++++|+..|++++.+.|++..++..++.++..+++...+..
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  168 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY  168 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence            6666666666666666666666666666666666666666666655544444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.26  E-value=5.9e-12  Score=107.88  Aligned_cols=110  Identities=9%  Similarity=-0.050  Sum_probs=96.2

Q ss_pred             HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213           66 LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV  145 (429)
Q Consensus        66 ~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA  145 (429)
                      ..|.+++.++|.+..    .++++|.+++..  |+|++|+..|++++.++|+++.+|+.+|.+|..+|++++|+.+|+++
T Consensus         5 ~~l~~al~~~p~~~~----~~~~~a~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   78 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLE----QLYALGFNQYQA--GKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYG   78 (142)
T ss_dssp             ----CCTTCCHHHHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHcCCHHHHH----HHHHHHHHHHHH--ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            457788888887664    888999999999  99999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHhhcccccc--ccccCC
Q 014213          146 LNKEPKNIMAAEIAERVKKELEKRGLRVND--TVIELP  181 (429)
Q Consensus       146 L~l~P~n~~a~~~La~l~~~l~e~~~a~~e--~~~~L~  181 (429)
                      +.++|+++.++..++.++..+++...+...  .+..+.
T Consensus        79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999987777663  344443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.25  E-value=3.3e-11  Score=111.24  Aligned_cols=125  Identities=14%  Similarity=0.040  Sum_probs=111.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 014213           55 LFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNR  134 (429)
Q Consensus        55 lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~  134 (429)
                      +...|+|++|+..|+++++..+.+.+..+.++.++|.+|+.+  |+|++|+..|++++.++|.+..+|+.+|.+|..+|+
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence            334688999999999999987655545667999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       135 ~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      +++|+..|++++.++|++..++..++.++..+++...+..  .+...+.
T Consensus        93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  141 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD  141 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999987776666  3344444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.25  E-value=6.8e-11  Score=114.52  Aligned_cols=133  Identities=12%  Similarity=-0.043  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      ...+...|..|.+.|++++|+..|+++++++|.+..    .....+.+.+..+.|++++|+..|+++++.+|+++.+|+.
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~----~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~  205 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL----TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG  205 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH----HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            456778899999999999999999999999987541    2121222222223389999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccc---ccccccCC
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRV---NDTVIELP  181 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~---~e~~~~L~  181 (429)
                      +|.+|..+|++++|+..|++++.++|+++.++..++.+...+++...+.   ..+...+.
T Consensus       206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999998887654332   24455555

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.23  E-value=4.9e-11  Score=109.45  Aligned_cols=128  Identities=17%  Similarity=0.080  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLL-----PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV----  114 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~-----P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel----  114 (429)
                      .+..+...|..++..|+|++|+..|.+++.+.     +. .+..+.++.++|.+|..+  |+|++|+..+.+++.+    
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-HPAVAATLNNLAVLYGKR--GKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH
Confidence            45667889999999999999999999999985     32 224567899999999999  9999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          115 ----TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK--------EPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       115 ----dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l--------~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                          +|....+++.+|.+|..+|++++|+..|++++.+        .|....++..++.++..+++...+..
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  190 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET  190 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence                5777889999999999999999999999999999        77778899999999999887666655

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.22  E-value=2.8e-11  Score=100.56  Aligned_cols=91  Identities=14%  Similarity=0.185  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      +..+.++|.+++..  |+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|++++.++|++..++..++.+
T Consensus         4 a~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTK--SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            45789999999999  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccc
Q 014213          163 KKELEKRGLRVND  175 (429)
Q Consensus       163 ~~~l~e~~~a~~e  175 (429)
                      +..+++...+...
T Consensus        82 ~~~~~~~~~A~~~   94 (126)
T 3upv_A           82 QIAVKEYASALET   94 (126)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHHhCHHHHHHH
Confidence            9999887777663

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.22  E-value=1.9e-11  Score=103.67  Aligned_cols=98  Identities=12%  Similarity=0.096  Sum_probs=83.2

Q ss_pred             cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------
Q 014213           81 DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIM------  154 (429)
Q Consensus        81 ~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~------  154 (429)
                      +.+.++.++|.+|++.  |+|++|+..|++||+++|+++.+|+++|.+|..+|+|++|+.+|++++.++|++..      
T Consensus         6 d~A~a~~~lG~~~~~~--~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a   83 (127)
T 4gcn_A            6 DAAIAEKDLGNAAYKQ--KDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIA   83 (127)
T ss_dssp             HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHH
Confidence            3467899999999999  99999999999999999999999999999999999999999999999999987743      


Q ss_pred             -HHHHHHHHHHHHHhhccccccccccC
Q 014213          155 -AAEIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       155 -a~~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                       ++..++.++..+++...++......|
T Consensus        84 ~~~~~lg~~~~~~~~~~~A~~~~~kal  110 (127)
T 4gcn_A           84 KAMSRAGNAFQKQNDLSLAVQWFHRSL  110 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             55666667777766666666433333

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.21  E-value=1.1e-10  Score=98.24  Aligned_cols=95  Identities=8%  Similarity=0.012  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      .++++|.++++.  |++++|+..++++++++|++..+|+.+|.+|..+|++++|+..|++++.++|++..++..++.++.
T Consensus        19 ~~~~~g~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKL--ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            467899999999  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccc--cccccCC
Q 014213          165 ELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       165 ~l~e~~~a~~--e~~~~L~  181 (429)
                      .+++...+..  .++..+.
T Consensus        97 ~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC--
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            9998877766  3344444

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.21  E-value=6.5e-11  Score=120.15  Aligned_cols=126  Identities=15%  Similarity=0.086  Sum_probs=116.7

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ...+..+...|..++..|++++|+..|.+++.+.|. .    .++.++|.+|+.+  |+|++|+..+++++.++|++..+
T Consensus       240 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~  312 (537)
T 3fp2_A          240 ENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P----NSYIFLALTLADK--ENSQEFFKFFQKAVDLNPEYPPT  312 (537)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H----HHHHHHHHHTCCS--SCCHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c----hHHHHHHHHHHHh--cCHHHHHHHHHHHhccCCCCHHH
Confidence            355677999999999999999999999999999997 4    4888999999998  99999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ++.+|.+|..+|++++|+..|++++.++|++..++..++.++..+++...+..
T Consensus       313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  365 (537)
T 3fp2_A          313 YYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA  365 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999887776666

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.21  E-value=1.5e-10  Score=92.69  Aligned_cols=91  Identities=11%  Similarity=0.053  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN------IMAA  156 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n------~~a~  156 (429)
                      +..+.++|.+++.+  |+|++|+..|++++.++|.++.+|+++|.+|..+|++++|+.+|++++.++|++      ..++
T Consensus         4 ~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQ--GLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            35789999999999  999999999999999999999999999999999999999999999999999999      8899


Q ss_pred             HHHHHHHHHHHhhcccccc
Q 014213          157 EIAERVKKELEKRGLRVND  175 (429)
Q Consensus       157 ~~La~l~~~l~e~~~a~~e  175 (429)
                      ..++.++..++....++..
T Consensus        82 ~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHhHhhhHhH
Confidence            9999999998866665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.20  E-value=4.3e-11  Score=112.78  Aligned_cols=108  Identities=15%  Similarity=0.096  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|+|++|+..|++++...|.+..    ++.++|.+|..+  |++++|+..++++++++|.+..+++.+
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l   95 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE----AWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAAL   95 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence            45788999999999999999999999999998774    889999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIA  159 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~L  159 (429)
                      |.+|..+|++++|+..|++++.+.|.+..++..+
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  129 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVN  129 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence            9999999999999999999999999987766665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.20  E-value=7.3e-11  Score=116.08  Aligned_cols=124  Identities=18%  Similarity=0.148  Sum_probs=114.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CC
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV------TP  116 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel------dP  116 (429)
                      ..+..+...|..++..|+|++|+..|++++++.|.+....+.++.++|.+|+.+  |+|++|+..+++++++      .|
T Consensus        46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYL--GDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHccCch
Confidence            567788999999999999999999999999999988765667899999999999  9999999999999998      67


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHh
Q 014213          117 LYSKALLKRARCYEALNRLDLAFRDVTTVLNK------EPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       117 ~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l------~P~n~~a~~~La~l~~~l~e  168 (429)
                      ....+++.+|.+|..+|++++|+..|++++.+      .|....++..++.++..+++
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            78899999999999999999999999999998      56667788999999988888

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.19  E-value=5.4e-11  Score=103.77  Aligned_cols=98  Identities=21%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus        82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      .+..+.++|.+|+..  |+|++|+..|+++++++|.+..+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.
T Consensus        10 ~a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMAR--KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            456899999999999  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccccc--ccccCC
Q 014213          162 VKKELEKRGLRVND--TVIELP  181 (429)
Q Consensus       162 l~~~l~e~~~a~~e--~~~~L~  181 (429)
                      ++..+++...+...  ++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhC
Confidence            99999988777773  344444

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.19  E-value=2.2e-11  Score=127.51  Aligned_cols=113  Identities=13%  Similarity=0.078  Sum_probs=88.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 014213           58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDL  137 (429)
Q Consensus        58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~de  137 (429)
                      .|++++|+..|+++++++|.+..    ++.++|.+|+.+  |+|++|+..++++++++|++..+|+.+|.+|..+|++++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~   75 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFV----AWLMLADAELGM--GDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAE   75 (568)
T ss_dssp             -------------------CCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            47899999999999999998875    999999999999  999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc
Q 014213          138 AFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT  176 (429)
Q Consensus       138 Al~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~  176 (429)
                      |+..|++++.++|++..++..++.++..+++...+....
T Consensus        76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  114 (568)
T 2vsy_A           76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY  114 (568)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999998877776633

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.19  E-value=9.4e-11  Score=118.99  Aligned_cols=123  Identities=11%  Similarity=0.039  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|+|++|+..|.+++.+.|.+..    ++.++|.+|..+  |+|++|+..+++++.++|.+..+++.+
T Consensus       277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l  350 (537)
T 3fp2_A          277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP----TYYHRGQMYFIL--QDYKNAKEDFQKAQSLNPENVYPYIQL  350 (537)
T ss_dssp             HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCSHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHH----HHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45778899999999999999999999999998875    899999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |.+|..+|++++|+..|++++.++|++..++..++.++..+++...+..
T Consensus       351 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  399 (537)
T 3fp2_A          351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK  399 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            9999999999999999999999999999999999999999887776665

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.19  E-value=8.5e-11  Score=112.96  Aligned_cols=137  Identities=7%  Similarity=-0.057  Sum_probs=114.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN--HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--  118 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~--~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--  118 (429)
                      +.+..+...|+.|...|+|++|+..|.+|+++.+..  +...+.+|.++|.+|..+  |+|++|+..|++|+++.|..  
T Consensus        35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~Al~l~~~~g~  112 (292)
T 1qqe_A           35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG--GNSVNAVDSLENAIQIFTHRGQ  112 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHcCC
Confidence            444566777889999999999999999999997543  223467899999999999  99999999999999998754  


Q ss_pred             ----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          119 ----SKALLKRARCYEAL-NRLDLAFRDVTTVLNKEPKN------IMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       119 ----~kAl~~rA~ay~~L-G~~deAl~~~~kAL~l~P~n------~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                          ..+|.++|.+|... |++++|+.+|++|+.+.|.+      ..++..++.++..+++...|+.  .++..+.
T Consensus       113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  188 (292)
T 1qqe_A          113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence                56899999999995 99999999999999998854      4578888999998888777776  4445554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.18  E-value=3.5e-10  Score=113.53  Aligned_cols=123  Identities=15%  Similarity=0.006  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN-----HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT----  115 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~-----~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld----  115 (429)
                      +..+...|..++..|+|++|+..|++|+++.+..     ....+..|.|+|.+|..+  |+|++|+..+++++.+.    
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~--g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM--GRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhHhcc
Confidence            4457789999999999999999999999985321     123456899999999999  99999999999999874    


Q ss_pred             ----CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213          116 ----PLYSKALLKRARCYEALN--RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus       116 ----P~~~kAl~~rA~ay~~LG--~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                          +..+.++..+|.++..+|  +|++|+.+|++|+.++|+++.++..++.+...++..
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW  188 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence                456889999999888765  699999999999999999999999999988777654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.18  E-value=2.8e-11  Score=109.17  Aligned_cols=96  Identities=16%  Similarity=0.118  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL-------YSK-----ALLKRARCYEALNRLDLAFRDVTTVLNK--  148 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~-------~~k-----Al~~rA~ay~~LG~~deAl~~~~kAL~l--  148 (429)
                      +..+.++|.+++++  |+|++|+..|++||+++|+       +..     +|+++|.|+..+|+|++|+.+|++||.+  
T Consensus        11 a~~~~~~G~~l~~~--g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQLVA--GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            56789999999999  9999999999999999999       555     9999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHHHhhccccccccccC
Q 014213          149 -----EPKNIMAA----EIAERVKKELEKRGLRVNDTVIEL  180 (429)
Q Consensus       149 -----~P~n~~a~----~~La~l~~~l~e~~~a~~e~~~~L  180 (429)
                           +|++..+|    ..++.++..+++...++..+...|
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence                 99999999    999999999999888888544333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.17  E-value=4.1e-10  Score=87.11  Aligned_cols=78  Identities=23%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      ++.++|.+|+.+  ++|++|+..|++++.++|.+..+++.+|.+|..+|++++|+..|++++.++|++..++..++.++.
T Consensus        11 ~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           11 AWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            444555555555  555555555555555555555555555555555555555555555555555555555555544443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.16  E-value=3.9e-10  Score=109.19  Aligned_cols=100  Identities=13%  Similarity=0.073  Sum_probs=91.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 014213           54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN  133 (429)
Q Consensus        54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG  133 (429)
                      .+...|++++|+..|+++++..|.++.    +++++|.+|+++  |+|++|+..+++++.++|+++.+|+++|.++..+|
T Consensus       175 l~~~~~~~~eA~~~~~~~l~~~p~~~~----~~~~la~~~~~~--g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          175 LAAGGEKLQDAYYIFQEMADKCSPTLL----LLNGQAACHMAQ--GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHhCchHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            334568999999999999999998874    999999999999  99999999999999999999999999999999999


Q ss_pred             CHHH-HHHHHHHHHHhCCCCHHHHHHH
Q 014213          134 RLDL-AFRDVTTVLNKEPKNIMAAEIA  159 (429)
Q Consensus       134 ~~de-Al~~~~kAL~l~P~n~~a~~~L  159 (429)
                      ++++ +..++++++.++|+++.+....
T Consensus       249 ~~~eaa~~~~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          249 KPPEVTNRYLSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            9976 5689999999999999877643

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.16  E-value=2.6e-10  Score=95.35  Aligned_cols=130  Identities=13%  Similarity=0.107  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH--IDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--  118 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~--~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--  118 (429)
                      ..+..+...|..++..|+|++|+..|.+++.+.+...  ...+.++.++|.+|+.+  |+|++|+..+++++.+.+..  
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~   84 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFL--GEFETASEYYKKTLLLARQLKD   84 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCC
Confidence            4567899999999999999999999999999977533  23456899999999999  99999999999999886543  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhhccccc
Q 014213          119 ----SKALLKRARCYEALNRLDLAFRDVTTVLNKEPK------NIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       119 ----~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~------n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                          ..+++.+|.+|..+|++++|+..+++++.+.+.      ...++..++.++..+++...+..
T Consensus        85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  150 (164)
T 3ro3_A           85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  150 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence                678999999999999999999999999987432      24567777888877776555544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.15  E-value=5.8e-10  Score=86.24  Aligned_cols=84  Identities=25%  Similarity=0.326  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..++..|+|++|+..|.+++.+.|.+..    ++.++|.+|+.+  |++++|+..++++++++|.+..+++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~   81 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE----AWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAKQ   81 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHH--hhHHHHHHHHHHHHhcCCCCHHHHH
Confidence            5778999999999999999999999999999998874    899999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 014213          124 KRARCYEALN  133 (429)
Q Consensus       124 ~rA~ay~~LG  133 (429)
                      .+|.++..+|
T Consensus        82 ~l~~~~~~~g   91 (91)
T 1na3_A           82 NLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            9999998765

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.15  E-value=1.2e-10  Score=97.14  Aligned_cols=96  Identities=18%  Similarity=0.217  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      ..++++|.+++..  |+|++|+..|++++.++|++..+|+.+|.+|..+|++++|+.+|++++.++|++..++..++.++
T Consensus        10 ~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B           10 QELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--CcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            5889999999999  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccc--cccccCC
Q 014213          164 KELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       164 ~~l~e~~~a~~--e~~~~L~  181 (429)
                      ..+++...+..  ..+..+.
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHC
Confidence            99988777666  3344443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.14  E-value=2.2e-10  Score=107.07  Aligned_cols=122  Identities=19%  Similarity=0.168  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CCCC
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV------TPLY  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel------dP~~  118 (429)
                      +..+...|..++..|+|++|+..|++++.+.|.+....+.++.++|.+|+.+  |+|++|+..+++++.+      .|..
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~   82 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--HDYAKALEYHHHDLTLARTIGDQLGE   82 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhhcccccHHH
Confidence            4678889999999999999999999999999988765667899999999999  9999999999999988      4556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHh
Q 014213          119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN------IMAAEIAERVKKELEK  168 (429)
Q Consensus       119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n------~~a~~~La~l~~~l~e  168 (429)
                      ..+++.+|.+|..+|++++|+..|++++.+.|..      ..++..++.++..+++
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            7899999999999999999999999999986643      3377788888888777

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.14  E-value=2.6e-10  Score=117.81  Aligned_cols=124  Identities=11%  Similarity=0.031  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      ...+...|..|.+.|++++|+..|++++...|.+..    ++.+++.+|.+.  |++++|+..++++++++|.++.+|+.
T Consensus       407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~  480 (597)
T 2xpi_A          407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL----PYLFLGMQHMQL--GNILLANEYLQSSYALFQYDPLLLNE  480 (597)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            445666777777777777777777777777776653    666666666666  67777777777777777766666767


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNK------EPKN-IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l------~P~n-~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|...|++++|+..|++++.+      +|++ ..++..++.++...++...+..
T Consensus       481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~  537 (597)
T 2xpi_A          481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID  537 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence            777777777777777777666666      4543 5666666666666665554444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.13  E-value=9.2e-11  Score=93.27  Aligned_cols=67  Identities=12%  Similarity=0.185  Sum_probs=32.9

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           88 NMAACYMQMGLSEYPRAIHECNLALEVTPLYSK-ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA  156 (429)
Q Consensus        88 nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k-Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~  156 (429)
                      ++|.+++..  |+|++|+..|+++++++|++.. +++.+|.+|..+|++++|+..|++++.++|++..++
T Consensus         5 ~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELINQ--GDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHH--TCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            344444444  4455555555555555554444 455555555555555555555555555555444444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.12  E-value=1.3e-10  Score=92.12  Aligned_cols=94  Identities=16%  Similarity=0.058  Sum_probs=87.2

Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C
Q 014213           75 LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK--N  152 (429)
Q Consensus        75 ~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~--n  152 (429)
                      +|.+..    ++.++|.+|+.+  |+|++|+..++++++++|.+..+++.+|.+|..+|++++|+..|++++.++|+  +
T Consensus         2 ~p~~~~----~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~   75 (112)
T 2kck_A            2 VDQNPE----EYYLEGVLQYDA--GNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN   75 (112)
T ss_dssp             CCSSTT----GGGGHHHHHHSS--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC
T ss_pred             CCCcHH----HHHHHHHHHHHh--hhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch
Confidence            566664    788999999999  99999999999999999999999999999999999999999999999999999  9


Q ss_pred             HHHHHHHHHHHHHH-Hhhccccc
Q 014213          153 IMAAEIAERVKKEL-EKRGLRVN  174 (429)
Q Consensus       153 ~~a~~~La~l~~~l-~e~~~a~~  174 (429)
                      ..++..++.++..+ ++...+..
T Consensus        76 ~~~~~~l~~~~~~~~~~~~~A~~   98 (112)
T 2kck_A           76 KDVWAAKADALRYIEGKEVEAEI   98 (112)
T ss_dssp             HHHHHHHHHHHTTCSSCSHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHH
Confidence            99999999999988 87666665

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.11  E-value=3.7e-10  Score=109.60  Aligned_cols=122  Identities=19%  Similarity=0.168  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CCCC
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV------TPLY  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel------dP~~  118 (429)
                      +..+...|..++..|+|++|+..|++++.+.|.++...+.++.++|.+|+.+  |+|++|+..+++++.+      .|..
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL--HDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHhccccHHH
Confidence            4578899999999999999999999999999988765667899999999999  9999999999999988      4556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHh
Q 014213          119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN------IMAAEIAERVKKELEK  168 (429)
Q Consensus       119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n------~~a~~~La~l~~~l~e  168 (429)
                      ..+++.+|.+|..+|++++|+..|++++.+.|..      ..++..++.++..+++
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            7899999999999999999999999999987643      4478888888888887

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.11  E-value=9.7e-10  Score=113.45  Aligned_cols=124  Identities=16%  Similarity=0.037  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..|++.|++++|+..|++++...|.+..    ++..++.+|.++  |++++|+..+++++..+|++..+++.
T Consensus       305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~  378 (597)
T 2xpi_A          305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD----VYPLHLASLHES--GEKNKLYLISNDLVDRHPEKAVTWLA  378 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT----THHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHh--CCHHHHHHHHHHHHhhCcccHHHHHH
Confidence            456788999999999999999999999999998875    788889999998  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +|.+|...|++++|+..|++++.++|++..++..++.++...++...+..
T Consensus       379 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  428 (597)
T 2xpi_A          379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS  428 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999998888887666665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.10  E-value=1.9e-10  Score=105.45  Aligned_cols=102  Identities=18%  Similarity=0.103  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLL-----PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV----  114 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~-----P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel----  114 (429)
                      .+..+...|..++..|+|++|+..|.+|+.+.     +.+ +....++.++|.+|+.+  |+|++|+..+++++.+    
T Consensus        84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH-PDVAKQLNNLALLCQNQ--GKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHh
Confidence            45678889999999999999999999999984     222 23457899999999999  9999999999999999    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          115 ----TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       115 ----dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                          .|....+++.+|.+|..+|++++|+..|++++.+
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                7778899999999999999999999999999987

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.10  E-value=1.2e-10  Score=117.04  Aligned_cols=113  Identities=15%  Similarity=0.029  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .+...|..++..|++++|+..|.+++.+.|.+..    ++.++|.+|..+  |++++|+..+++++..+|.+..+++.+|
T Consensus       306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la  379 (514)
T 2gw1_A          306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF----PYIQLACLAYRE--NKFDDCETLFSEAKRKFPEAPEVPNFFA  379 (514)
T ss_dssp             HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH----HHHHHHHHTTTT--TCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHHcccCHHHHHHHH
Confidence            3455555555555555555555555555555442    555555555555  5555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKEPKNIM------AAEIAERVKKE  165 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~P~n~~------a~~~La~l~~~  165 (429)
                      .+|..+|++++|+..|++++.+.|++..      ++..++.++..
T Consensus       380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (514)
T 2gw1_A          380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTR  424 (514)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh
Confidence            5555555555555555555555555433      55555555554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.09  E-value=4e-10  Score=111.14  Aligned_cols=130  Identities=11%  Similarity=0.105  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI---DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY-  118 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~---~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~-  118 (429)
                      ..+..+...|..++..|+++.|+..|.+|+.+.+....   ..+.++.++|.+|..+  |+|++|+..+++|+++.+.. 
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~  218 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL--KQYEDAISHFQKAYSMAEAEK  218 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHcC
Confidence            35677899999999999999999999999999776542   3567899999999999  99999999999999886533 


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHHHhhccccc
Q 014213          119 -----SKALLKRARCYEALNRLDLAFRDVTTVLN-----KE-PKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       119 -----~kAl~~rA~ay~~LG~~deAl~~~~kAL~-----l~-P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                           ..+++++|.+|..+|++++|+.+|++++.     .+ |....++..++.++..+++...|..
T Consensus       219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  285 (383)
T 3ulq_A          219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE  285 (383)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence                 35899999999999999999999999999     46 7788899999999988887666655

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.09  E-value=6.7e-10  Score=109.69  Aligned_cols=99  Identities=14%  Similarity=0.072  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+.+.|..|+..|+|++|+..|++||+++|.+..    +|+++|.+|+.+  |+|++|+..|++|++++|++..++
T Consensus       194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~al~l~P~~~~a~  267 (336)
T 1p5q_A          194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK----GLSRRGEAHLAV--NDFELARADFQKVLQLYPNNKAAK  267 (336)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCHHHH
Confidence            34678999999999999999999999999999999874    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHH-HHHHHHHHH
Q 014213          123 LKRARCYEALNRLDLA-FRDVTTVLN  147 (429)
Q Consensus       123 ~~rA~ay~~LG~~deA-l~~~~kAL~  147 (429)
                      +.++.++..+|++++| ...|.+++.
T Consensus       268 ~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          268 TQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998 446665554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.09  E-value=1.4e-11  Score=126.97  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=103.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---------------HHHHH
Q 014213           59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---------------SKALL  123 (429)
Q Consensus        59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---------------~kAl~  123 (429)
                      ++|++|+..|..++...|...    .++.++|.+|+++  |+|++|+..|++|++++|.+               ..+|+
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a----~~~~~~G~~~~~~--g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~  321 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQA----AIVKEKGTVYFKG--GKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL  321 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHHHH----HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence            456677778888888777655    4899999999999  99999999999999999998               79999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc--cccCC
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT--VIELP  181 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~--~~~L~  181 (429)
                      ++|.||..+|+|++|+.+|++||.++|++..++..++.++..+++...|....  +..+.
T Consensus       322 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999888877744  44454

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.09  E-value=6.4e-10  Score=90.10  Aligned_cols=86  Identities=17%  Similarity=0.191  Sum_probs=72.8

Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C
Q 014213           75 LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK--N  152 (429)
Q Consensus        75 ~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~--n  152 (429)
                      +|.+.    .+++++|.+|+.+  |+|++|+..|+++++++|+++.+|+.+|.+|..+|++++|+..|++++.+.|.  +
T Consensus         3 ~p~~~----~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A            3 DPEDP----FTRYALAQEHLKH--DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT   76 (100)
T ss_dssp             --CCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             CccCH----HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence            56666    4899999999999  99999999999999999999999999999999999999999999999999774  4


Q ss_pred             HHHHHHHHHHHHHH
Q 014213          153 IMAAEIAERVKKEL  166 (429)
Q Consensus       153 ~~a~~~La~l~~~l  166 (429)
                      ..+...+..++...
T Consensus        77 ~~~~~~l~~~l~~~   90 (100)
T 3ma5_A           77 QKDLSELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHc
Confidence            55555555554433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.08  E-value=1.3e-09  Score=92.81  Aligned_cols=98  Identities=14%  Similarity=0.068  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|.+++.++|.+..    ++.++|.+|..+  |++++|+..+.+++.++|.+..++..
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~  120 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK----GYYRRAASNMAL--GKFRAALRDYETVVKVKPHDKDAKMK  120 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHHh--ccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            456788999999999999999999999999998874    899999999999  99999999999999999999998855


Q ss_pred             HH--HHHHHcCCHHHHHHHHHHHHHh
Q 014213          125 RA--RCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       125 rA--~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      ++  ..+..+|++++|+..+.++..+
T Consensus       121 ~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          121 YQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccchHHH
Confidence            54  4488889999999998876554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.07  E-value=1.1e-09  Score=87.21  Aligned_cols=91  Identities=10%  Similarity=0.041  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      +..+.++|.+++..  |+|++|+..+++++.++|.+..+++.+|.+|..+|++++|+..+++++.++|++..++..++.+
T Consensus         4 ~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSV--GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            45788999999999  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccc
Q 014213          163 KKELEKRGLRVND  175 (429)
Q Consensus       163 ~~~l~e~~~a~~e  175 (429)
                      +..+++...+...
T Consensus        82 ~~~~~~~~~A~~~   94 (118)
T 1elw_A           82 LEFLNRFEEAKRT   94 (118)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHHhhHHHHHHH
Confidence            9998877766663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.05  E-value=2.3e-09  Score=114.24  Aligned_cols=145  Identities=11%  Similarity=-0.036  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCC----------HHHHHHHHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDH-GGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE----------YPRAIHECNLA  111 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdy-eeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~----------y~eAi~~~~~A  111 (429)
                      +.-..+......+.+.+.| ++|+..|+++|.++|.+.    ++|++|+.++..+  ++          |++|+..++++
T Consensus        26 ~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~----taW~~R~~~l~~l--~~~~~~~~~~~~~~~eL~~~~~~   99 (567)
T 1dce_A           26 KLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFA----TLWNCRREVLQHL--ETEKSPEESAALVKAELGFLESC   99 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhH----HHHHHHHHHHHhc--ccccchhhhhhhHHHHHHHHHHH
Confidence            3334444445556667776 678999999999999988    4999999999999  88          99999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-hhccccccccccCCCCCCCCC
Q 014213          112 LEVTPLYSKALLKRARCYEALN--RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE-KRGLRVNDTVIELPPEYVEPP  188 (429)
Q Consensus       112 LeldP~~~kAl~~rA~ay~~LG--~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~-e~~~a~~e~~~~L~p~~~~P~  188 (429)
                      ++.+|++..+|+.|+.++..++  ++++|+.+++++++++|.|..+|.....+...++ ....++......+.   ..|.
T Consensus       100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~  176 (567)
T 1dce_A          100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFS  176 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCC
Confidence            9999999999999999999999  7799999999999999999999999999998887 33444442233333   4466


Q ss_pred             cccccchh
Q 014213          189 VTSIAPKV  196 (429)
Q Consensus       189 ~~~~~a~v  196 (429)
                      ...+|.-.
T Consensus       177 n~saW~~r  184 (567)
T 1dce_A          177 NYSSWHYR  184 (567)
T ss_dssp             CHHHHHHH
T ss_pred             CccHHHHH
Confidence            66666643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.04  E-value=2.2e-10  Score=99.69  Aligned_cols=98  Identities=16%  Similarity=0.084  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014213           82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEV------------------TPLYSKALLKRARCYEALNRLDLAFRDVT  143 (429)
Q Consensus        82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel------------------dP~~~kAl~~rA~ay~~LG~~deAl~~~~  143 (429)
                      .+..+.++|..+++.  |+|++|+..|++||.+                  +|.+..+|+++|.||..+|+|++|+.+|+
T Consensus        10 ~a~~~~~~G~~~~~~--~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A           10 SVEALRQKGNELFVQ--KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            456889999999999  9999999999999999                  78888999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHhhccccccc--cccCC
Q 014213          144 TVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT--VIELP  181 (429)
Q Consensus       144 kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~--~~~L~  181 (429)
                      +++.++|++..++..++.++..+++...+....  +..+.
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            999999999999999999999999888877744  44454

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.04  E-value=7.4e-10  Score=117.98  Aligned_cols=118  Identities=10%  Similarity=0.023  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Q 014213           43 GMSQELKEEGNKLFQKRD----------HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS--EYPRAIHECNL  110 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gd----------yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g--~y~eAi~~~~~  110 (429)
                      +....|..+|..+...++          |++|+..|++||+.+|++..    +|++|+.++.++  +  +|++|+..|++
T Consensus        61 ~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~----aW~hR~w~l~~l--~~~~~~~el~~~~k  134 (567)
T 1dce_A           61 DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG----TWHHRCWLLSRL--PEPNWARELELCAR  134 (567)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTC--SSCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--ccccHHHHHHHHHH
Confidence            344568889999998888          99999999999999999985    999999999999  8  77999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          111 ALEVTPLYSKALLKRARCYEALN-RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       111 ALeldP~~~kAl~~rA~ay~~LG-~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      +++++|++..||+.|+.++..+| .+++|++++++++..+|+|..+|..+..+...+
T Consensus       135 ~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            99999999999999999999999 999999999999999999999999999998887

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.04  E-value=9.3e-10  Score=102.80  Aligned_cols=128  Identities=17%  Similarity=0.096  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLP----RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-----  115 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P----~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-----  115 (429)
                      +..+...|..++..|+|++|+..|.+++.+..    .+......++.++|.+|..+  |+|++|+..+.+++.+.     
T Consensus        69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~a~~~~~~~~~  146 (311)
T 3nf1_A           69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR--GKYKEAEPLCKRALEIREKVLG  146 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhcC
Confidence            45577899999999999999999999999851    11224557899999999999  99999999999999884     


Q ss_pred             ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          116 ---PLYSKALLKRARCYEALNRLDLAFRDVTTVLNK--------EPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       116 ---P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l--------~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                         |....+++.+|.+|..+|++++|+..|++++.+        .|....++..++.++..+++...+..
T Consensus       147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  216 (311)
T 3nf1_A          147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET  216 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence               667789999999999999999999999999998        77777889999999998887666655

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.03  E-value=3.8e-09  Score=100.95  Aligned_cols=123  Identities=14%  Similarity=0.055  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HhCCCCH---
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLAL---EVTPLYS---  119 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL---eldP~~~---  119 (429)
                      +...|..+...|+|++|+..|.+|+.+.+....  ..+.+++++|.+|..+  |+|++|+..+++|+   +..|++.   
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--~~~~~A~~~~~kal~~~~~~~~~~~~~  195 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN--GYLKKGIDLFEQILKQLEALHDNEEFD  195 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhcCccccch
Confidence            445666677777777777777777776654322  1245777788888877  78888888888877   4455532   


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHhhccc
Q 014213          120 -KALLKRARCYEALNRLDLAFRDVTTVLNKEPK------NIMAAEIAERVKKELEKRGLR  172 (429)
Q Consensus       120 -kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~------n~~a~~~La~l~~~l~e~~~a  172 (429)
                       .+|+++|.+|..+|+|++|+.+|++++.+.+.      -..++..++.++..+++...|
T Consensus       196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence             57778888888888888888888888776532      156667777777776655444

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.03  E-value=1.3e-09  Score=101.80  Aligned_cols=102  Identities=20%  Similarity=0.175  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLL-----PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV----  114 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~-----P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel----  114 (429)
                      .+..+...|..++..|+|++|+..|.+++.+.     +. ......++.++|.+|..+  |++++|+..+++++.+    
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-HPDVAKQLNNLALLCQNQ--GKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHH
Confidence            35668889999999999999999999999985     32 224567899999999999  9999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          115 ----TPLYSKALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       115 ----dP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                          .|....+++.+|.+|..+|++++|+..|++++.+
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                7778889999999999999999999999999985

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.02  E-value=1.2e-09  Score=109.72  Aligned_cols=121  Identities=12%  Similarity=0.019  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRN----HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~----~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ..+.+.|..|+..|+|++|+.+|++++++.+..    ....+.+++++|.+++.++.++|++|+..|++|++++|+++.+
T Consensus        95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~  174 (472)
T 4g1t_A           95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF  174 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHH
Confidence            346789999999999999999999999986532    1134568899999998885568999999999999999999999


Q ss_pred             HHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          122 LLKRARCYEA---LNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       122 l~~rA~ay~~---LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      ++.+|.++..   .+++++|+..|++|+.++|++..++..++.....+
T Consensus       175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~  222 (472)
T 4g1t_A          175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM  222 (472)
T ss_dssp             HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            9999988654   56778999999999999999999988887665544

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=99.01  E-value=9.1e-10  Score=88.48  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=67.7

Q ss_pred             CceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCC-CCceEEEEECC-CCCEEEecChHHHHHHHHhhccCCcEEEEE
Q 014213          260 PKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPS-CRAVLIKYRDE-EGDLVTITTDEELRWAEASAEMQGSVRLFV  337 (429)
Q Consensus       260 ~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~-~~~~~iky~De-dgDliti~~~~dl~~a~~~~~~~~~~rl~v  337 (429)
                      ...+|||||. |+..+.+|..++|.+|+++|++|++. ....++.|+|+ +|.+| |.+++||+.|.+.+. .+.+.||+
T Consensus         4 ~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~s~~~v-i~~d~dl~~aw~~~~-n~~LtL~C   80 (83)
T 1oey_A            4 MAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELV-PLSEDSMKDAWGQVK-NYCLTLWC   80 (83)
T ss_dssp             SCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCE-ECCTTTHHHHHTTCB-TTEEEEEE
T ss_pred             CcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCCCCCee-ccChHHHHHHHHhcc-CCcEEEEE
Confidence            4589999997 99999999999999999999999965 45699999995 66889 999999999999865 44699998


Q ss_pred             Ee
Q 014213          338 VG  339 (429)
Q Consensus       338 ~e  339 (429)
                      ..
T Consensus        81 ~~   82 (83)
T 1oey_A           81 EN   82 (83)
T ss_dssp             CC
T ss_pred             ec
Confidence            64

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.01  E-value=1.3e-09  Score=107.57  Aligned_cols=130  Identities=11%  Similarity=0.057  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI---DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP---  116 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~---~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP---  116 (429)
                      ..+..+...|..++..|+++.|+..|.+|+.+.+....   ..+.++.++|.+|..+  |+|++|+..+.+|+++.+   
T Consensus       139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~--~~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF--KHYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHcC
Confidence            45677888899999999999999999999988775432   3567888999999998  999999999999998743   


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          117 ---LYSKALLKRARCYEALNRLDLAFRDVTTVLN-----KEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       117 ---~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~-----l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                         ....+++++|.+|..+|++++|+.+|++++.     .+|....++..++.++..+++...|..
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  282 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ  282 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence               1245788999999999999999999999998     678778888899999888887666655

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.00  E-value=6.1e-09  Score=97.41  Aligned_cols=118  Identities=17%  Similarity=0.138  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQ----MGLSEYPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~k----l~~g~y~eAi~~~~~ALeldP~~~k  120 (429)
                      +..+...|..++..|++++|+..|++|++  |.+.    .++.++|.+|..    .  +++++|+..++++++++  ++.
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~----~a~~~lg~~~~~g~~~~--~~~~~A~~~~~~a~~~~--~~~   75 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN----SGCFNLGVLYYQGQGVE--KNLKKAASFYAKACDLN--YSN   75 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH----HHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT--CHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH----HHHHHHHHHHHcCCCcC--CCHHHHHHHHHHHHHCC--CHH
Confidence            45678889999999999999999999998  5554    378889999998    8  89999999999998886  788


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----HHhhccccc
Q 014213          121 ALLKRARCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE----LEKRGLRVN  174 (429)
Q Consensus       121 Al~~rA~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~----l~e~~~a~~  174 (429)
                      +++.+|.+|..    .+++++|+..|++++.+  +++.++..++.++..    .++...+..
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~  135 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVE  135 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHH
Confidence            99999999999    99999999999999987  478888888888877    555555444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.00  E-value=2.8e-09  Score=102.82  Aligned_cols=124  Identities=8%  Similarity=-0.144  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..|...|..+...|++++|...|++||++.|.+..   .+|.+++.++.++  |++++|+..|++|++++|.+..+|+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~~  174 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRA--EGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHH--HCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc---HHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            45778899999999999999999999999998762   3789999999998  999999999999999999998888877


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          126 ARCYEA-LNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       126 A~ay~~-LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      +..... +|++++|+..|++++.+.|+++.++..++.++..+++...+..
T Consensus       175 a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~  224 (308)
T 2ond_A          175 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV  224 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            666443 7999999999999999999999999999988877776555544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.99  E-value=2.1e-09  Score=102.81  Aligned_cols=127  Identities=13%  Similarity=0.045  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-------CC
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV-------TP  116 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel-------dP  116 (429)
                      .-+...|..++..++|++|+..|.+|+.+.+....  ..+.++.++|.+|..+  |+|++|+..+++|+++       .+
T Consensus       116 ~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--g~~~~A~~~~~~al~~~~~~~~~~~  193 (293)
T 3u3w_A          116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAEN--GYLKKGIDLFEQILKQLEALHDNEE  193 (293)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             HHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhcccchh
Confidence            34445888888889999999999999997665443  2355789999999999  9999999999999953       12


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhh-ccccc
Q 014213          117 LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN------IMAAEIAERVKKELEKR-GLRVN  174 (429)
Q Consensus       117 ~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n------~~a~~~La~l~~~l~e~-~~a~~  174 (429)
                      ....+|+++|.+|..+|+|++|+.++++++.+.+..      ..++..++.++..+++. ..|..
T Consensus       194 ~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          194 FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            345689999999999999999999999999986544      77888999999888742 44444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.99  E-value=2.1e-09  Score=102.74  Aligned_cols=102  Identities=17%  Similarity=0.072  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLP---RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P---~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---  118 (429)
                      +..+...|..|+..|+|++|+.+|++|++...   .+....+.+++|+|.+|..+  |+|++|+..+++|+++.+..   
T Consensus       155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~--~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD--SRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHcCcH
Confidence            45689999999999999999999999997543   34445677999999999999  99999999999999987543   


Q ss_pred             ---HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 014213          119 ---SKALLKRARCYEALN-RLDLAFRDVTTVLNK  148 (429)
Q Consensus       119 ---~kAl~~rA~ay~~LG-~~deAl~~~~kAL~l  148 (429)
                         ..+|+++|.+|..+| .+++|+.+|++|+.+
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence               789999999999999 579999999999986

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.99  E-value=1.7e-09  Score=104.89  Aligned_cols=128  Identities=13%  Similarity=0.089  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY----  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~----  118 (429)
                      +..+...|..++..|+|++|+..|.+++.+.+....  ..+.++.++|.+|..+  |++++|+..+++++.+.|..    
T Consensus       187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~  264 (406)
T 3sf4_A          187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL--GEFETASEYYKKTLLLARQLKDRA  264 (406)
T ss_dssp             HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHhCcCch
Confidence            445778899999999999999999999999876543  3466899999999999  99999999999999998766    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhccccc
Q 014213          119 --SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN------IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       119 --~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n------~~a~~~La~l~~~l~e~~~a~~  174 (429)
                        ..+++.+|.+|..+|++++|+..|++++.+.+..      ..++..++.++..+++...+..
T Consensus       265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  328 (406)
T 3sf4_A          265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH  328 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence              7899999999999999999999999999986544      6688889999988887666655

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.99  E-value=1.5e-09  Score=104.91  Aligned_cols=127  Identities=13%  Similarity=-0.000  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN--HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY----  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~--~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~----  118 (429)
                      +..+.+.|+.|...|+|++|+.+|++|+++.+..  ....+.++.++|.+|..   |+|++|+..|++|+++.|..    
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~---g~~~~A~~~~~~Al~~~~~~~~~~  152 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP---LDLSKAVHLYQQAAAVFENEERLR  152 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHhCCChh
Confidence            4566778888888888888888888888886543  22345678888888854   88999999999988887643    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHhhccccc
Q 014213          119 --SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI------MAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       119 --~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~------~a~~~La~l~~~l~e~~~a~~  174 (429)
                        ..+++++|.+|..+|+|++|+.+|++++.+.|.+.      .++..++.++..+++...+..
T Consensus       153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence              56788889999999999999999999988866442      245555556665566555555

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.98  E-value=3.2e-09  Score=104.69  Aligned_cols=106  Identities=15%  Similarity=0.131  Sum_probs=95.1

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----hC
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH--IDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE-----VT  115 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~--~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe-----ld  115 (429)
                      ..+..+...|..++..|+|++|+..|.+|+++.+...  ...+.++.|+|.+|..+  |+|++|+..+++|++     .+
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ--SQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhhcc
Confidence            3456788999999999999999999999999977543  24567899999999999  999999999999999     46


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213          116 -PLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEP  150 (429)
Q Consensus       116 -P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P  150 (429)
                       |....+++.+|.+|..+|++++|+..|++++.+.+
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             88899999999999999999999999999999843

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.98  E-value=1.3e-09  Score=89.21  Aligned_cols=92  Identities=22%  Similarity=0.353  Sum_probs=86.3

Q ss_pred             cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           81 DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAE  160 (429)
Q Consensus        81 ~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La  160 (429)
                      .....+.++|.+++..  |+|++|+..+++++.++|.+..+++.+|.+|..+|++++|+..|++++.++|++..++..++
T Consensus        14 ~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           14 DLALMVKNKGNECFQK--GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             CHHHHHHHHHHHHHHT--TCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            3457899999999999  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccccc
Q 014213          161 RVKKELEKRGLRVN  174 (429)
Q Consensus       161 ~l~~~l~e~~~a~~  174 (429)
                      .++..+++...+..
T Consensus        92 ~~~~~~~~~~~A~~  105 (133)
T 2lni_A           92 AALEAMKDYTKAMD  105 (133)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHHhhHHHHHH
Confidence            99999887766665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.97  E-value=2.3e-09  Score=94.61  Aligned_cols=129  Identities=9%  Similarity=-0.097  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh---CCC-
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH--IDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV---TPL-  117 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~--~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel---dP~-  117 (429)
                      .+..+...|..++..|+|++|+..|.+++.+.....  ...+.++.++|.+|+.+  |+|++|+..+.+++++   .++ 
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~  102 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA--GNWDAARRCFLEERELLASLPED  102 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCcc
Confidence            466788999999999999999999999999765432  24567899999999999  9999999999999998   443 


Q ss_pred             ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHHhhccccc
Q 014213          118 ---YSKALLKRARCYEALNRLDLAFRDVTTVLNKEP--KNI----MAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       118 ---~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P--~n~----~a~~~La~l~~~l~e~~~a~~  174 (429)
                         ...+++++|.+|..+|++++|+..+++++.+.+  ++.    .++..++.++..+++...+..
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  168 (203)
T 3gw4_A          103 PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ  168 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence               356799999999999999999999999997733  232    235677777777776655544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.96  E-value=4.4e-09  Score=83.36  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSY-LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~-l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      ..+.|..++..|+|++|+..|+++++++|.+.    . ++.++|.+|+.+  |+|++|+..|+++++++|++..++++  
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~--   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGK----DEAYYLMGNAYRKL--GDWQKALNNYQSAIELNPDSPALQAR--   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH----HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTSTHHHHH--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCCcHHHHHH--
Confidence            46789999999999999999999999999876    6 899999999999  99999999999999999999998855  


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                            +.+.+|+..|++++.++|++.
T Consensus        75 ------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 ------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             ------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             ------HHHHHHHHHHHHHhccCcccc
Confidence                  677888999999888888764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.96  E-value=5.3e-09  Score=103.23  Aligned_cols=107  Identities=19%  Similarity=0.092  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----hC
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN--HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE-----VT  115 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~--~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe-----ld  115 (429)
                      ..+..+...|..++..|+|++|+..|.+|+++.+..  ....+.++.|+|.+|..+  |+|++|+..+++|+.     .+
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~--~~~~~A~~~~~~al~~~~~~~~  257 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRS--GDDQMAVEHFQKAAKVSREKVP  257 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHCG
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhhCC
Confidence            456778899999999999999999999999986532  224567899999999999  999999999999999     78


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          116 PLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       116 P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      |....+++.+|.+|..+|++++|+..+++++.+.+.
T Consensus       258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            888999999999999999999999999999999553

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.96  E-value=1.7e-10  Score=103.64  Aligned_cols=121  Identities=14%  Similarity=0.051  Sum_probs=95.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---------------
Q 014213           55 LFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS---------------  119 (429)
Q Consensus        55 lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~---------------  119 (429)
                      ....++|+.|.+.|+......+.    .+..+.++|.+++..  |+|++|+..|.+++.+.|.++               
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~   87 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDEEKVQ----SAFDIKEEGNEFFKK--NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE   87 (198)
T ss_dssp             --------CCCSGGGCCHHHHHH----HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH
T ss_pred             hhhhhhccccCchhhCCHHHHHH----HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence            33456666666666544443333    245889999999999  999999999999999999887               


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc--cccCC
Q 014213          120 -KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT--VIELP  181 (429)
Q Consensus       120 -kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~--~~~L~  181 (429)
                       .+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.++..+++...+....  +..+.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  152 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  152 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence             899999999999999999999999999999999999999999999999877777633  44444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.95  E-value=3.3e-09  Score=101.34  Aligned_cols=103  Identities=16%  Similarity=0.062  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKAL---KLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL----  117 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kAL---el~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~----  117 (429)
                      +..+...|..|+..|+|++|+.+|++|+   +..|.+......+++|+|.+|..+  |+|++|+..+++|+.+.+.    
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~--~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD--SRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHH--hhHHHHHHHHHHHHHHHHhcCcH
Confidence            5678999999999999999999999999   445544322336899999999999  9999999999999988643    


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 014213          118 --YSKALLKRARCYEALNRLDLA-FRDVTTVLNKE  149 (429)
Q Consensus       118 --~~kAl~~rA~ay~~LG~~deA-l~~~~kAL~l~  149 (429)
                        ...+|+++|.+|..+|++++| ..+|++|+.+.
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence              278999999999999999999 78899999763

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.95  E-value=2e-09  Score=103.80  Aligned_cols=114  Identities=15%  Similarity=0.083  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHH-hCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 014213           44 MSQELKEEGNKLF-------QKRDH-------GGALLKYEKALK-LLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHEC  108 (429)
Q Consensus        44 ~A~~lk~~Gn~lf-------~~gdy-------eeAl~~Y~kALe-l~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~  108 (429)
                      .+..|...|..+.       ..|++       ++|+..|++||+ +.|.+..    +|.++|.++..+  |++++|+..|
T Consensus        49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~----~~~~~~~~~~~~--~~~~~A~~~~  122 (308)
T 2ond_A           49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML----LYFAYADYEESR--MKYEKVHSIY  122 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHH----HHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHhc--CCHHHHHHHH
Confidence            3445667777766       35885       999999999999 7998874    999999999999  9999999999


Q ss_pred             HHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213          109 NLALEVTPLYSK-ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus       109 ~~ALeldP~~~k-Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      +++++++|.+.. +|+.+|.++...|++++|+..|++|+.+.|.+..++...+.+.
T Consensus       123 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~  178 (308)
T 2ond_A          123 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            999999999887 9999999999999999999999999999999887776555543

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.93  E-value=9e-09  Score=101.74  Aligned_cols=123  Identities=12%  Similarity=0.005  Sum_probs=111.2

Q ss_pred             HHHHHHHHHH----HHc---CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHhCC
Q 014213           46 QELKEEGNKL----FQK---RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYP--RAIHECNLALEVTP  116 (429)
Q Consensus        46 ~~lk~~Gn~l----f~~---gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~--eAi~~~~~ALeldP  116 (429)
                      ..|..++..+    ...   +++++++..++++|+.+|.+..    +|++|+.++.++  +.++  +++..++++|+.+|
T Consensus       104 ~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~----aW~~R~~vl~~l--~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A          104 QIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH----VWSYRKWLVDTF--DLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHh--cccChHHHHHHHHHHHHhCC
Confidence            3466777777    555   8999999999999999999984    999999999999  8888  99999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          117 LYSKALLKRARCYEALNR------LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       117 ~~~kAl~~rA~ay~~LG~------~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+..||..|+.++..+++      ++++++++++++.++|+|.+++..+..+...++....++.
T Consensus       178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~  241 (306)
T 3dra_A          178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLE  241 (306)
T ss_dssp             TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred             CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHH
Confidence            999999999999999998      9999999999999999999999999999988876444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.93  E-value=2.6e-09  Score=103.23  Aligned_cols=127  Identities=12%  Similarity=-0.002  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC-----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL-----  117 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~-----  117 (429)
                      +..+...|+.|...|+|++|+..|.+|+++.+....  ..+.+|.++|.+|..+  |+|++|+..|++|+++.+.     
T Consensus        36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~--g~~~~A~~~~~~Al~l~~~~g~~~  113 (307)
T 2ifu_A           36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDL--QRMPEAVQYIEKASVMYVENGTPD  113 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCGGGGHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHcCCHH
Confidence            345666688999999999999999999999875432  3467899999999999  9999999999999998542     


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhccccc
Q 014213          118 -YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN------IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       118 -~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n------~~a~~~La~l~~~l~e~~~a~~  174 (429)
                       ...+|.++|.+|.. |++++|+.+|++|+.+.|..      ..++..++.++..+++...++.
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence             25689999999999 99999999999999997754      5678888899888887777766

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.93  E-value=4.9e-09  Score=84.80  Aligned_cols=90  Identities=19%  Similarity=0.167  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      +.++..+|.+++..  |+|++|+..+++++..+|.+..+++.+|.+|..+|++++|+..|++++.++|++..++..++.+
T Consensus        12 ~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKV--ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHc--cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            46889999999999  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccc
Q 014213          163 KKELEKRGLRVN  174 (429)
Q Consensus       163 ~~~l~e~~~a~~  174 (429)
                      +..+++...+..
T Consensus        90 ~~~~~~~~~A~~  101 (131)
T 2vyi_A           90 LSSLNKHVEAVA  101 (131)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHhCCHHHHHH
Confidence            999887776666

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.93  E-value=7.1e-09  Score=86.47  Aligned_cols=105  Identities=18%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC--ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC------
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH--IDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP------  116 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~--~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP------  116 (429)
                      +..+...|..++..|+|++|+..|.+++.+.+...  ...+.++.++|.+|+.+  |+|++|+..+++++.+.+      
T Consensus        49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~  126 (164)
T 3ro3_A           49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL--QDYEKAIDYHLKHLAIAQELKDRI  126 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHccchH
Confidence            45688899999999999999999999999876532  23467899999999999  999999999999998743      


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          117 LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       117 ~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      ....+++.+|.+|..+|++++|+..+++++.+...
T Consensus       127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            23568999999999999999999999999987543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.91  E-value=3.8e-09  Score=98.59  Aligned_cols=128  Identities=13%  Similarity=0.089  Sum_probs=109.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY----  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~----  118 (429)
                      +..+...|..++..|++++|+..|++++.+.+....  ..+.++.++|.+|..+  |++++|+..+++++.+.+..    
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~  260 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL--GEFETASEYYKKTLLLARQLKDRA  260 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhhcchh
Confidence            345778899999999999999999999998775332  3456899999999999  99999999999999987765    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhccccc
Q 014213          119 --SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN------IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       119 --~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n------~~a~~~La~l~~~l~e~~~a~~  174 (429)
                        ..+++.+|.+|..+|++++|+..|++++.+.|..      ..++..++.++..+++...+..
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          261 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence              7789999999999999999999999999986533      4577888888888887666655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.91  E-value=1e-08  Score=107.55  Aligned_cols=127  Identities=12%  Similarity=0.082  Sum_probs=105.4

Q ss_pred             HHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-
Q 014213           40 VFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLP----RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV-  114 (429)
Q Consensus        40 ~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P----~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel-  114 (429)
                      ..+..+..+.+++..+..+|+|++|+..|.++|++..    .++++.+..+.|+|.+|..+  |+|++|+..++++|++ 
T Consensus       304 ~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~--g~~~eA~~~~~~aL~i~  381 (490)
T 3n71_A          304 EMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL--QAYEEASHYARRMVDGY  381 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHH
Confidence            3457778888899999999999999999999998753    35557889999999999999  9999999999999976 


Q ss_pred             ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH---HHHHHHHHHHh
Q 014213          115 ----TPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNK-----EPKNIMAAE---IAERVKKELEK  168 (429)
Q Consensus       115 ----dP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l-----~P~n~~a~~---~La~l~~~l~e  168 (429)
                          .|++   ...|+++|.+|..+|+|++|+..|++|+.+     -|+++....   .+..++..++.
T Consensus       382 ~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          382 MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence                3555   457999999999999999999999999975     677776555   44455544443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.90  E-value=9.1e-09  Score=101.69  Aligned_cols=117  Identities=12%  Similarity=-0.108  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHH----HHcCC-CCHHHHHHHHHHHHHhCCCCH
Q 014213           47 ELKEEGNKLFQKR--DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACY----MQMGL-SEYPRAIHECNLALEVTPLYS  119 (429)
Q Consensus        47 ~lk~~Gn~lf~~g--dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y----~kl~~-g~y~eAi~~~~~ALeldP~~~  119 (429)
                      .|..+|..+...+  ++++|+..++.+|..+|.+..    +|+.|+.++    ..++. +++++++..|+++|+.+|++.
T Consensus        69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~----aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny  144 (306)
T 3dra_A           69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ----IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH  144 (306)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH----HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH----HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH
Confidence            3556677777766  777777777777777777763    777777776    43311 467777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          120 KALLKRARCYEALNRLD--LAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~d--eAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      .+|+.|+.++..+|.++  +++.++++++.++|.|-.++.....+...++
T Consensus       145 ~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~  194 (306)
T 3dra_A          145 HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK  194 (306)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred             HHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence            77777777777777776  7777777777777777777777776666554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=3.4e-09  Score=88.49  Aligned_cols=91  Identities=16%  Similarity=0.139  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIA  159 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~L  159 (429)
                      +..+..+|.+++..  |+|++|+..++++++++|++   ..+++.+|.+|..+|++++|+..|++++.++|++..++..+
T Consensus        28 ~~~~~~~a~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  105 (148)
T 2dba_A           28 VEQLRKEGNELFKC--GDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR  105 (148)
T ss_dssp             HHHHHHHHHHHHTT--TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence            35889999999999  99999999999999999998   89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccccc
Q 014213          160 ERVKKELEKRGLRVND  175 (429)
Q Consensus       160 a~l~~~l~e~~~a~~e  175 (429)
                      +.++..+++...+...
T Consensus       106 a~~~~~~~~~~~A~~~  121 (148)
T 2dba_A          106 SQALEKLGRLDQAVLD  121 (148)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            9999999887777663

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.90  E-value=2.2e-09  Score=105.45  Aligned_cols=128  Identities=11%  Similarity=0.093  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY----  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~----  118 (429)
                      +..+...|..++..|+|++|+..|.+++++.+....  ..+.++.++|.+|+.+  |+|++|+..+++++.+.+..    
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~  300 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL--GQFEDAAEHYKRTLALAVELGERE  300 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC--cCHHHHHHHHHHHHHHHHHcCCHH
Confidence            446778999999999999999999999999875432  3456889999999999  99999999999999998754    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhccccc
Q 014213          119 --SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN------IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       119 --~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n------~~a~~~La~l~~~l~e~~~a~~  174 (429)
                        ..+++.+|.+|..+|++++|+.+|++++.+.+..      ..++..++.++..+++...+..
T Consensus       301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence              7789999999999999999999999999985532      4578888888888887666655

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.89  E-value=9.9e-09  Score=84.38  Aligned_cols=89  Identities=17%  Similarity=0.044  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS---KALLKRARCYEALNRLDLAFRDVTTVLNKEPKN---IMAAEI  158 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~---kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n---~~a~~~  158 (429)
                      .++++|.+++..  |+|++|+..+++++..+|++.   .+++.+|.+|..+|++++|+..|++++.+.|++   +.++..
T Consensus         4 ~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            4 TAYNVAFDALKN--GKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            567899999999  999999999999999999988   899999999999999999999999999999999   899999


Q ss_pred             HHHHHHHHHhhcccccc
Q 014213          159 AERVKKELEKRGLRVND  175 (429)
Q Consensus       159 La~l~~~l~e~~~a~~e  175 (429)
                      ++.++..+++...+...
T Consensus        82 la~~~~~~g~~~~A~~~   98 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQT   98 (129)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHH
Confidence            99999999887777663

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.89  E-value=1.2e-09  Score=113.61  Aligned_cols=94  Identities=16%  Similarity=0.138  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+.+.|..|+..|+|++|+..|++|++++|.+..    +++++|.+|+.+  |+|++|+..+++|++++|++..+++.
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~----~~~~lg~~~~~~--g~~~eA~~~~~~al~~~p~~~~~~~~  113 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK----GYYRRAASNMAL--GKFRAALRDYETVVKVKPHDKDAKMK  113 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCTTHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            566889999999999999999999999999998874    899999999999  99999999999999999999999999


Q ss_pred             HHHH--HHHcCCHHHHHHHHHH
Q 014213          125 RARC--YEALNRLDLAFRDVTT  144 (429)
Q Consensus       125 rA~a--y~~LG~~deAl~~~~k  144 (429)
                      ++.+  +..+|++++|+..+++
T Consensus       114 l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1          114 YQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHHHHHHhccccc
Confidence            9998  8889999999999883

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.89  E-value=8.7e-09  Score=82.61  Aligned_cols=90  Identities=19%  Similarity=0.175  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      +.++.++|.+|...  |++++|+..+.+++..+|.+..+++.+|.+|...|++++|+..|++++.+.|.+..++..++.+
T Consensus         9 ~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQ--GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            35889999999999  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhccccc
Q 014213          163 KKELEKRGLRVN  174 (429)
Q Consensus       163 ~~~l~e~~~a~~  174 (429)
                      +..+++...+..
T Consensus        87 ~~~~~~~~~A~~   98 (125)
T 1na0_A           87 YYKQGDYDEAIE   98 (125)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHhcCHHHHHH
Confidence            988887666655

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.89  E-value=1.1e-09  Score=108.39  Aligned_cols=102  Identities=7%  Similarity=-0.095  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .+.+.|..|+..|+|++|+..|++||+++|.+..    +|+++|.+|+.+  |+|++|+.+|+++++++|++..++..++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~a~~~~--g~~~~A~~~l~~al~l~p~~~~a~~~L~  305 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK----ALFRRGKAKAEL--GQMDSARDDFRKAQKYAPDDKAIRRELR  305 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTT--TCHHHHHHHHHHTTC-------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            6788999999999999999999999999998874    999999999999  9999999999999999999999999999


Q ss_pred             HHH-HHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          127 RCY-EALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       127 ~ay-~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                      .+. ...+.++.+...|.+++.+.|+++.
T Consensus       306 ~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          306 ALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            984 4566788999999999999998764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.88  E-value=1.3e-08  Score=101.79  Aligned_cols=117  Identities=10%  Similarity=0.019  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHH
Q 014213           44 MSQELKEEGNKLFQKRD----------HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS--EYPRAIHECNLA  111 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gd----------yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g--~y~eAi~~~~~A  111 (429)
                      ....|..++..+...+.          +++++..++.+|..+|.+..    +|+.|+.++..+  +  .|++++..|+++
T Consensus        63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~----aW~hR~wlL~~l--~~~~~~~EL~~~~k~  136 (331)
T 3dss_A           63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG----TWHHRCWLLSRL--PEPNWARELELCARF  136 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHC--SSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHhcc--CcccHHHHHHHHHHH
Confidence            34457777777766555          78999999999999999985    999999999999  6  599999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          112 LEVTPLYSKALLKRARCYEALNR-LDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       112 LeldP~~~kAl~~rA~ay~~LG~-~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      ++++|.+..||..|+.++..+|. +++++.++.+++..+|.|..+|..+..+...+
T Consensus       137 l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          137 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999 69999999999999999999999999998887

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.87  E-value=3.7e-08  Score=92.00  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCC
Q 014213           45 SQELKEEGNKLFQ----KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQ----MGLSEYPRAIHECNLALEVTP  116 (429)
Q Consensus        45 A~~lk~~Gn~lf~----~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~k----l~~g~y~eAi~~~~~ALeldP  116 (429)
                      +..+...|..++.    .+++++|+..|++|+++.  +.    .+++++|.+|..    .  +++++|+..++++++.+ 
T Consensus        38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~----~a~~~lg~~~~~g~~~~--~~~~~A~~~~~~a~~~~-  108 (273)
T 1ouv_A           38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YS----NGCHLLGNLYYSGQGVS--QNTNKALQYYSKACDLK-  108 (273)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH----HHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CH----HHHHHHHHHHhCCCCcc--cCHHHHHHHHHHHHHcC-
Confidence            3456778888888    888888888888888874  33    477788888888    7  88888888888888774 


Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          117 LYSKALLKRARCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       117 ~~~kAl~~rA~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                       ++.+++.+|.+|..    .+++++|+.+|++++.+.  +..++..++.++..
T Consensus       109 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A          109 -YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence             77888888888888    888888888888888865  56777777777765

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=98.85  E-value=6.8e-09  Score=85.37  Aligned_cols=70  Identities=24%  Similarity=0.337  Sum_probs=57.6

Q ss_pred             CCceEEEEccCC----ccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCC------cEEEEEE
Q 014213          269 GEDIRVAQLPLN----SSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQG------SVRLFVV  338 (429)
Q Consensus       269 ~~DiR~~~i~~~----~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~------~~rl~v~  338 (429)
                      +-+||-|.|..+    .+|.+|+..+|+.|+ ...+.|+|+|.|||||+|-|++|+.+++..++..+      +.+|+|+
T Consensus        17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~-~~DIaLNYrD~eGDLIrilddeDv~lmi~~sr~~~s~k~~FPWeLhvT   95 (107)
T 1oey_J           17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQ-REDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHIT   95 (107)
T ss_dssp             EEEEEEEEECSCTTCCCCHHHHHHHHHHHHC-CSSEEEEEECTTSCEEECCSHHHHHHHHHHCCCCCCTTCBCSSCEEEE
T ss_pred             CceeeeEEEccccccCCCHHHHHHHHHHHhc-ccceeeeeecCCCCEEEEcchHHHHHHHHHhhcCcccccccceeEEEe
Confidence            345666665444    599999999999997 67899999999999999999999999999885433      3778887


Q ss_pred             e
Q 014213          339 G  339 (429)
Q Consensus       339 e  339 (429)
                      .
T Consensus        96 ~   96 (107)
T 1oey_J           96 Q   96 (107)
T ss_dssp             E
T ss_pred             e
Confidence            5

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.84  E-value=2.4e-08  Score=89.19  Aligned_cols=104  Identities=17%  Similarity=0.130  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCH
Q 014213           61 HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS---EYPRAIHECNLALEVT-P-LYSKALLKRARCYEALNRL  135 (429)
Q Consensus        61 yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g---~y~eAi~~~~~ALeld-P-~~~kAl~~rA~ay~~LG~~  135 (429)
                      ...+...|.+++...+.+.    .+.++.|.|+.+.  .   ++.++|..++.+++.+ | +...++|++|.+|+.+|+|
T Consensus        14 l~~~~~~y~~e~~~~~~~~----~~~F~ya~~Lv~S--~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y   87 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRS--KYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY   87 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHHccCCCcH----HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH
Confidence            4567788888888777655    4889999999998  6   7789999999999999 7 6789999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          136 DLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       136 deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                      ++|+++++++|+++|+|..+......+...+.+.+
T Consensus        88 ~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kdg  122 (152)
T 1pc2_A           88 EKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDG  122 (152)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998886644

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.83  E-value=2.5e-08  Score=88.03  Aligned_cols=126  Identities=10%  Similarity=-0.004  Sum_probs=105.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACY-MQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y-~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ..+..+...|..++..|++++|+..|++++...| ++.    ++..++.+. ...  +...+|+..++++++++|++..+
T Consensus        38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~----~~~~~~~~~~~~~--~~~~~a~~~~~~al~~~P~~~~~  110 (176)
T 2r5s_A           38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNS----YKSLIAKLELHQQ--AAESPELKRLEQELAANPDNFEL  110 (176)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHH----HHHHHHHHHHHHH--HTSCHHHHHHHHHHHHSTTCHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChH----HHHHHHHHHHHhh--cccchHHHHHHHHHHhCCCCHHH
Confidence            3456788999999999999999999999999999 653    444444332 232  34456899999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHhhcccccc
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEPKN--IMAAEIAERVKKELEKRGLRVND  175 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P~n--~~a~~~La~l~~~l~e~~~a~~e  175 (429)
                      ++.+|.+|..+|++++|+..|++++.++|+.  ..++..++.++..+++...+...
T Consensus       111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A          111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            9999999999999999999999999999975  66999999999999877666553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.83  E-value=4.8e-08  Score=100.97  Aligned_cols=122  Identities=11%  Similarity=0.111  Sum_probs=101.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213           39 EVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL----PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV  114 (429)
Q Consensus        39 ~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~----P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel  114 (429)
                      ...+..+....+.+......|+|++|+..|+++|++.    ..++++.+..+.|+|.+|..+  |+|++|+..|+++|++
T Consensus       292 ~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~--g~~~eA~~~~~~aL~i  369 (433)
T 3qww_A          292 RDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM--QDWEGALKYGQKIIKP  369 (433)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHH
Confidence            3345666777777777778899999999999999864    335557888999999999999  9999999999999976


Q ss_pred             -----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 014213          115 -----TPLY---SKALLKRARCYEALNRLDLAFRDVTTVLNK-----EPKNIMAAEIAERV  162 (429)
Q Consensus       115 -----dP~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l-----~P~n~~a~~~La~l  162 (429)
                           -|++   ...|+++|.+|..+|+|++|+..|++|+.+     -|+++.+......+
T Consensus       370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence                 3444   557999999999999999999999999986     68888877655543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.83  E-value=2.3e-08  Score=82.47  Aligned_cols=76  Identities=12%  Similarity=0.080  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+...|..++..|+|++|+..|+++++++|.++.    ++.++|.||+.+  |++++|+..+++++.+.|+++....
T Consensus        26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA----LRVFYAMVLYNL--GRYEQGVELLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            4567899999999999999999999999999999875    999999999999  9999999999999999999987654


Q ss_pred             HH
Q 014213          124 KR  125 (429)
Q Consensus       124 ~r  125 (429)
                      ..
T Consensus       100 ~~  101 (117)
T 3k9i_A          100 YK  101 (117)
T ss_dssp             TH
T ss_pred             HH
Confidence            33

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.81  E-value=1.5e-08  Score=97.19  Aligned_cols=96  Identities=18%  Similarity=0.217  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                      ..+.++|.+|+..  |+|++|+..|++|+.++|++..+|+++|.+|..+|++++|+.+|++++.++|++..++..++.++
T Consensus         5 ~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            5 QELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5789999999999  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccc--cccccCC
Q 014213          164 KELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       164 ~~l~e~~~a~~--e~~~~L~  181 (429)
                      ..+++...|..  .++..+.
T Consensus        83 ~~~g~~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLA  102 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC
Confidence            99988777766  3344444

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.80  E-value=2.1e-08  Score=81.22  Aligned_cols=92  Identities=11%  Similarity=0.031  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN-------IMA  155 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n-------~~a  155 (429)
                      +..+.++|.+|+..  |+|++|+..+.+++.++|.+..+++.+|.+|..+|++++|+..|++++.+.|++       ..+
T Consensus         4 ~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            4 ALKEKELGNDAYKK--KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            45788999999999  999999999999999999999999999999999999999999999999999877       889


Q ss_pred             HHHHHHHHHHHHhhccccccc
Q 014213          156 AEIAERVKKELEKRGLRVNDT  176 (429)
Q Consensus       156 ~~~La~l~~~l~e~~~a~~e~  176 (429)
                      +..++.++..+++...+....
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~  102 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFY  102 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHH
Confidence            999999998888777666633

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.79  E-value=7.8e-08  Score=96.13  Aligned_cols=117  Identities=11%  Similarity=-0.076  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCCCCH
Q 014213           43 GMSQELKEEGNKLFQKR--DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSE-YPRAIHECNLALEVTPLYS  119 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~g--dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~-y~eAi~~~~~ALeldP~~~  119 (429)
                      +....|..++..+...+  ++++++.+|+++|+.+|.|.    .+|++++.+...+  +. +++++..++++|+.+|.+.
T Consensus       106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy----~AW~~R~~vl~~l--~~~~~eel~~~~~~I~~~p~N~  179 (331)
T 3dss_A          106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF----HCWDYRRFVAAQA--AVAPAEELAFTDSLITRNFSNY  179 (331)
T ss_dssp             TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHh--CcCHHHHHHHHHHHHHHCCCCH
Confidence            34456778888888888  49999999999999999998    4999999999999  88 6999999999999999999


Q ss_pred             HHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          120 KALLKRARCYEAL--------------NRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       120 kAl~~rA~ay~~L--------------G~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      .||+.|+.++..+              +.++++++++.+++.++|+|.++|..+..+...
T Consensus       180 SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~  239 (331)
T 3dss_A          180 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGA  239 (331)
T ss_dssp             HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            9999999999988              569999999999999999999999877666543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=4.6e-08  Score=86.15  Aligned_cols=105  Identities=13%  Similarity=0.017  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CC
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKL---LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP--LY  118 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel---~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP--~~  118 (429)
                      .+..+...|..++..|+|++|+..|.+++.+   .+.++...+.++.++|.+|..+  |++++|+..+++++.+.+  .+
T Consensus        65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~  142 (203)
T 3gw4_A           65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF--GDLAGARQEYEKSLVYAQQADD  142 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhccc
Confidence            4567889999999999999999999999999   4433324567899999999999  999999999999997642  22


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213          119 ----SKALLKRARCYEALNRLDLAFRDVTTVLNKEP  150 (429)
Q Consensus       119 ----~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P  150 (429)
                          ..++..+|.+|..+|++++|+..+++++.+..
T Consensus       143 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence                34578999999999999999999999998843

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.77  E-value=1.1e-07  Score=98.10  Aligned_cols=120  Identities=8%  Similarity=0.019  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLL----PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT---  115 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~----P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld---  115 (429)
                      ..+..+...-..+...|+|++|+..|+++|++.    +.+++..+..+.|+|.+|..+  |+|++|+..|.++|.+-   
T Consensus       285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~--g~~~eA~~~~~~~L~i~~~~  362 (429)
T 3qwp_A          285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL--GLLEEALFYGTRTMEPYRIF  362 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHhHHHH
Confidence            445667777788889999999999999999763    445557888999999999999  99999999999999762   


Q ss_pred             --CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHH
Q 014213          116 --PLY---SKALLKRARCYEALNRLDLAFRDVTTVLNK-----EPKNIMAAEIAERVKK  164 (429)
Q Consensus       116 --P~~---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l-----~P~n~~a~~~La~l~~  164 (429)
                        |++   ...|+++|.+|..+|++++|+..|++|+.+     -|+++.....+..+..
T Consensus       363 lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~  421 (429)
T 3qwp_A          363 FPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEE  421 (429)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence              444   457999999999999999999999999986     6888877666544433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.77  E-value=3e-08  Score=99.65  Aligned_cols=92  Identities=16%  Similarity=0.130  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+.+.|..|++.|+|++|+..|++||+++|.+..    +|+++|.+|+.+  ++|++|+.++++|++++|++..++.
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~--g~~~eA~~~l~~Al~l~P~~~~~~~  345 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK----ALYRRAQGWQGL--KEYDQALADLKKAQEIAPEDKAIQA  345 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH----HHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3456788999999999999999999999999998874    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHH
Q 014213          124 KRARCYEALNRLDLAFRD  141 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~  141 (429)
                      .++.++..++++++|...
T Consensus       346 ~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          346 ELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999888654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.76  E-value=6.7e-08  Score=97.34  Aligned_cols=111  Identities=10%  Similarity=0.002  Sum_probs=102.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 014213           54 KLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEVTPLYSKALLKRARCYEAL  132 (429)
Q Consensus        54 ~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~L  132 (429)
                      .+...+..++|+.+++++|.++|.+.    ++|+.|+.++..+  + .+++++..++.+|..+|++..+|+.|+.++..+
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~y----taWn~R~~iL~~l--~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l  136 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHY----TVWQYRFSLLTSL--NKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI  136 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhH----HHHHHHHHHHHHh--hhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            34444556899999999999999998    4999999999999  8 599999999999999999999999999999999


Q ss_pred             -C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          133 -N-RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       133 -G-~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                       + ++++++..+++++.++|.|..++.....+...++...
T Consensus       137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence             8 9999999999999999999999999999999888655

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.76  E-value=5e-08  Score=95.51  Aligned_cols=108  Identities=7%  Similarity=-0.120  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC--CC-CHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT--PL-YSKALL  123 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld--P~-~~kAl~  123 (429)
                      ..+..|..+++.++|++|+..|+.++...+..  ....+++++|.++..+  |++++|+..|++++...  |. ...+++
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~--~~~~a~~~LG~al~~L--G~~~eAl~~l~~a~~g~~~P~~~~da~~  212 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF--LAGAAGVAHGVAAANL--ALFTEAERRLTEANDSPAGEACARAIAW  212 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH--HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTSTTTTTTHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc--cHHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCccccHHHHH
Confidence            56778889999999999999998776643111  1134788999999999  99999999999998654  65 667999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIA  159 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~L  159 (429)
                      ++|.|+..+|+.++|...|++++..+|+ ..+...|
T Consensus       213 ~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          213 YLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            9999999999999999999999999998 6665554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.75  E-value=4.6e-08  Score=79.01  Aligned_cols=82  Identities=13%  Similarity=0.073  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--CHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL--YSKAL  122 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~--~~kAl  122 (429)
                      +..+...|..|+..|+|++|+..|+++++++|.+..    +|.++|.||..+  |++++|+..+++++++.|.  +..+.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~   80 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG----TYYHLGKLYERL--DRTDDAIDTYAQGIEVAREEGTQKDL   80 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHhhhhcCCchhHH
Confidence            456889999999999999999999999999999885    999999999999  9999999999999999764  34444


Q ss_pred             HHHHHHHHHc
Q 014213          123 LKRARCYEAL  132 (429)
Q Consensus       123 ~~rA~ay~~L  132 (429)
                      ..+...+...
T Consensus        81 ~~l~~~l~~~   90 (100)
T 3ma5_A           81 SELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            4444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.74  E-value=1.3e-08  Score=91.48  Aligned_cols=71  Identities=18%  Similarity=0.229  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-----------CH
Q 014213           43 GMSQELKEEGNKLFQKRDH----------GGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-----------EY  101 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdy----------eeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-----------~y  101 (429)
                      ..+..|.+.|+.+...+++          ++|+..|++||+++|++..    +|+|+|.+|..+  |           +|
T Consensus        34 ~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~----A~~~LG~ay~~l--g~l~P~~~~a~g~~  107 (158)
T 1zu2_A           34 LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE----AVWCIGNAYTSF--AFLTPDETEAKHNF  107 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--HHHCCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHh--cccCcchhhhhccH
Confidence            3456688899999998875          5999999999999999885    999999999987  5           89


Q ss_pred             HHHHHHHHHHHHhCCCCH
Q 014213          102 PRAIHECNLALEVTPLYS  119 (429)
Q Consensus       102 ~eAi~~~~~ALeldP~~~  119 (429)
                      ++|+..|++||+++|++.
T Consensus       108 ~eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A          108 DLATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhCCCCH
Confidence            999999999999999974

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.74  E-value=7.9e-08  Score=93.77  Aligned_cols=129  Identities=11%  Similarity=0.011  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC------
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT------  115 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld------  115 (429)
                      .+..+...|..++..|+|++|+..|.+++.+.|....  ..+.+++++|.+|+.+  |+|++|+..+++++.+.      
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--G~~~~A~~~~~~al~~~~~~~~~  129 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ--GFLQTAWETQEKAFQLINEQHLE  129 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhccc
Confidence            3456778889999999999999999999988775443  2345678899999998  99999999999998875      


Q ss_pred             --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHHhhccccc
Q 014213          116 --PLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN-----IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       116 --P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n-----~~a~~~La~l~~~l~e~~~a~~  174 (429)
                        |....++..+|.+|..+|++++|+..+++++.+.|..     ..++..++.++...++...+..
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  195 (373)
T 1hz4_A          130 QLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS  195 (373)
T ss_dssp             TSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence              3345678889999999999999999999999887752     3567777888877776665554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.73  E-value=3.3e-08  Score=94.97  Aligned_cols=82  Identities=12%  Similarity=0.029  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHH
Q 014213           61 HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--SKALLKRARCYEALNRLDLA  138 (429)
Q Consensus        61 yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--~kAl~~rA~ay~~LG~~deA  138 (429)
                      +++|+..|++++.++|++..    +++++|.+|+.+  |++++|+..+.++++++|++  ..++.+++.+|..+|+.++|
T Consensus       201 ~~~a~~~l~~al~~~P~~~~----~~~~la~~l~~~--g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          201 DTPEIQQLQQQVAENPEDAA----LATQLALQLHQV--GRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             SCHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             cCccHHHHHHHHhcCCccHH----HHHHHHHHHHHc--ccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            33345556666777787774    899999999999  99999999999999999999  89999999999999999999


Q ss_pred             HHHHHHHHHh
Q 014213          139 FRDVTTVLNK  148 (429)
Q Consensus       139 l~~~~kAL~l  148 (429)
                      +..|+++|..
T Consensus       275 ~~~~r~al~~  284 (287)
T 3qou_A          275 ASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999863

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.72  E-value=4.3e-08  Score=89.79  Aligned_cols=113  Identities=12%  Similarity=0.020  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhCCCCH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS---EYPRAIHECNLALEVTPLYS  119 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g---~y~eAi~~~~~ALeldP~~~  119 (429)
                      ..+..+...|..|+..+++++|+..|++|++.  .++    .+++++|.+|..-  |   ++++|+..|++|+  ++.++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~----~a~~~lg~~y~~~--g~~~~~~~A~~~~~~A~--~~g~~   85 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDG----DALALLAQLKIRN--PQQADYPQARQLAEKAV--EAGSK   85 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCH----HHHHHHHHHTTSS--TTSCCHHHHHHHHHHHH--HTTCH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH----HHHHHHHHHHHcC--CCCCCHHHHHHHHHHHH--HCCCH
Confidence            45667889999999999999999999999886  344    4788899998862  2   8999999999995  46789


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH
Q 014213          120 KALLKRARCYEA----LNRLDLAFRDVTTVLNKEP--KNIMAAEIAERVKKE  165 (429)
Q Consensus       120 kAl~~rA~ay~~----LG~~deAl~~~~kAL~l~P--~n~~a~~~La~l~~~  165 (429)
                      .+++++|.+|..    .+++++|+..|++++...|  +++.+...++.++..
T Consensus        86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           86 SGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            999999999987    8899999999999999887  458888899988876

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.69  E-value=1.5e-07  Score=77.20  Aligned_cols=80  Identities=20%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN---HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~---~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      +..+...|..+|+.++|..|+..|+.|++..+.+   ......++.++|.||.++  |+++.|+..+++|+.++|++..+
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~--g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ--GDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHH
Confidence            3557778888888888888888888887765322   123455667777777777  77777777777777777777666


Q ss_pred             HHHHH
Q 014213          122 LLKRA  126 (429)
Q Consensus       122 l~~rA  126 (429)
                      +.+++
T Consensus        83 ~~n~~   87 (104)
T 2v5f_A           83 NGNLK   87 (104)
T ss_dssp             HHHHH
T ss_pred             HhhHH
Confidence            66655

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.67  E-value=6.9e-08  Score=97.22  Aligned_cols=121  Identities=8%  Similarity=-0.091  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHH
Q 014213           43 GMSQELKEEGNKLFQKR-DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~g-dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALeldP~~~k  120 (429)
                      +....|..+|..+...+ ++++++..++.+|..+|.+..    +|+.|+.++..+. + ++++++..|+++|+++|++..
T Consensus        86 ~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~----aW~hR~wlL~~l~-~~~~~~EL~~~~k~L~~dpkNy~  160 (349)
T 3q7a_A           86 AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ----VWHHRLLLLDRIS-PQDPVSEIEYIHGSLLPDPKNYH  160 (349)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH----HHHHHHHHHHHHC-CSCCHHHHHHHHHHTSSCTTCHH
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCHH
Confidence            66778999999999999 599999999999999999984    9999999998862 4 789999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          121 ALLKRARCYEALNRLD--------LAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       121 Al~~rA~ay~~LG~~d--------eAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      ||+.|+.++..++.++        ++++++++++.++|.|..++.....+...++.
T Consensus       161 AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          161 TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            9999999999999888        99999999999999999999999998877653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.65  E-value=9.9e-08  Score=87.37  Aligned_cols=113  Identities=13%  Similarity=-0.065  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhC
Q 014213           44 MSQELKEEGNKLFQKR----DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQ----MGLSEYPRAIHECNLALEVT  115 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~g----dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~k----l~~g~y~eAi~~~~~ALeld  115 (429)
                      .+..+...|..|+. +    ++++|+..|.+|++.  .++    .+++++|.+|+.    .  +++.+|+..+++|++..
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~--g~~----~a~~~Lg~~y~~g~g~~--~d~~~A~~~~~~A~~~~  119 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA--GSK----SGEIVLARVLVNRQAGA--TDVAHAITLLQDAARDS  119 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHTCGGGSS--CCHHHHHHHHHHHTSST
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC--CCH----HHHHHHHHHHHcCCCCc--cCHHHHHHHHHHHHHcC
Confidence            45668889999888 7    999999999999764  455    488999999987    6  89999999999999999


Q ss_pred             C--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          116 P--LYSKALLKRARCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       116 P--~~~kAl~~rA~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      |  .++.+++++|.+|..    .+++++|+.+|++++.+ |+++.+...++.++..-
T Consensus       120 ~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g  175 (212)
T 3rjv_A          120 ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQG  175 (212)
T ss_dssp             TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred             CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence            8  469999999999999    88999999999999999 88888999999887543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.63  E-value=1.6e-07  Score=76.62  Aligned_cols=83  Identities=11%  Similarity=0.032  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC--CHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL--YSKAL  122 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~--~~kAl  122 (429)
                      +..+...|..++..|+|++|+..|++++.++|.+..    +|.++|.+|..+  |++++|+..|+++++++|.  +..++
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~   92 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV----AWKWLGKTLQGQ--GDRAGARQAWESGLAAAQSRGDQQVV   92 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhccccccHHHH
Confidence            356889999999999999999999999999998874    899999999999  9999999999999999884  44555


Q ss_pred             HHHHHHHHHcC
Q 014213          123 LKRARCYEALN  133 (429)
Q Consensus       123 ~~rA~ay~~LG  133 (429)
                      ..+...+..++
T Consensus        93 ~~l~~~l~~l~  103 (115)
T 2kat_A           93 KELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            55555554444

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.62  E-value=1.6e-07  Score=97.08  Aligned_cols=131  Identities=9%  Similarity=-0.090  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..+...|++++|...|++++.+.|.++.   .+|.+.+.++.++  |++++|+..|.+|++..|.....++.
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~~~--~~~~~A~~~~~~Al~~~~~~~~~~~~  395 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRA--EGIKSGRMIFKKAREDARTRHHVYVT  395 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH---HHHHHHHHHHHHH--HHHHHHHHHHHHHHTCTTCCTHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch---HHHHHHHHHHHHh--cCHHHHHHHHHHHHhccCCchHHHHH
Confidence            345777888899999999999999999999887642   4899999999998  99999999999999999988888877


Q ss_pred             HHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccC
Q 014213          125 RARC-YEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIEL  180 (429)
Q Consensus       125 rA~a-y~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L  180 (429)
                      .+.. +..+|++++|...|+++++..|+++.++..+..++..+++...+..  +++...
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            7655 4579999999999999999999999999999988877765544444  444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.61  E-value=6.1e-07  Score=73.60  Aligned_cols=82  Identities=13%  Similarity=-0.030  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVT-------PLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE  157 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-------P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~  157 (429)
                      -++.+|..++..  ++|..|+.+++.|+...       +.....+..+|.||..+|+++.|+..+++++.++|++..++.
T Consensus         7 dc~~lG~~~~~~--~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            7 DCFELGKVAYTE--ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHc--cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            457899999999  99999999999999863       346788999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHh
Q 014213          158 IAERVKKELEK  168 (429)
Q Consensus       158 ~La~l~~~l~e  168 (429)
                      ++..+...+..
T Consensus        85 n~~~~~~~~~~   95 (104)
T 2v5f_A           85 NLKYFEYIMAK   95 (104)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hHHHHHHHHHh
Confidence            88866665543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.60  E-value=2e-07  Score=90.89  Aligned_cols=130  Identities=11%  Similarity=0.004  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC---
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY---  118 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~---  118 (429)
                      -.+..+...|..++..|++++|+..|++++...|.+.. ....+++++|.+|...  |+|++|+..+.+++.+.|..   
T Consensus        12 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~   89 (373)
T 1hz4_A           12 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQTEQMARQHDVW   89 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHhcCcH
Confidence            34566788899999999999999999999999886543 2455788999999999  99999999999999986543   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHhhccccc
Q 014213          119 ---SKALLKRARCYEALNRLDLAFRDVTTVLNKE--------PKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       119 ---~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~--------P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                         ..+++.+|.+|..+|++++|+..|++++.+.        |....++..++.++..+++...+..
T Consensus        90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (373)
T 1hz4_A           90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA  156 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence               2457889999999999999999999999875        3345567778888888777666555

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.59  E-value=2.7e-07  Score=75.16  Aligned_cols=75  Identities=15%  Similarity=0.008  Sum_probs=66.4

Q ss_pred             CCCCCccHHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213           75 LPRNHIDVSYLRSNMAACYMQMGLSE---YPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus        75 ~P~~~~~~a~l~~nrA~~y~kl~~g~---y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      +|.++.    ++..+|.+++..  ++   .++|...+++||.++|+++++++.+|.+++..|+|++|+..|++++..+|.
T Consensus         2 ~p~~~~----~~~~~a~al~~~--~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTAT----QLAAKATTLYYL--HKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHH----HHHHHHHHHHHT--TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHH----HHHHHHHHHHHh--cCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            466664    888899998765  44   799999999999999999999999999999999999999999999999998


Q ss_pred             CHHH
Q 014213          152 NIMA  155 (429)
Q Consensus       152 n~~a  155 (429)
                      ++..
T Consensus        76 ~~~~   79 (93)
T 3bee_A           76 NLDR   79 (93)
T ss_dssp             TCCH
T ss_pred             CccH
Confidence            5443

>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A

Probab=98.59  E-value=1.1e-07  Score=76.16  Aligned_cols=66  Identities=20%  Similarity=0.220  Sum_probs=58.1

Q ss_pred             CCceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECC-CCCEEEecChHHHHHHHHh
Q 014213          259 EPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDE-EGDLVTITTDEELRWAEAS  326 (429)
Q Consensus       259 ~~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~De-dgDliti~~~~dl~~a~~~  326 (429)
                      ..++.||+.|.+||..++||.+++|.+|.++|+++.....-.++-|+|+ +|+  -|.||+||..|++-
T Consensus        10 ~~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~~~~~l~~ykde~~g~--~i~sD~dl~~aiqr   76 (85)
T 1ip9_A           10 LKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDTDNFKLQTKLFDGSGE--EIKTDSQVSNIIQA   76 (85)
T ss_dssp             CCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTSSCEEEEECCSSSCCS--CCCSHHHHHHHHHT
T ss_pred             cCceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcccceEEEEecCCCCCC--cccCHHHHHHHHHh
Confidence            3678999999999999999999999999999999997655566667765 677  99999999999984

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.52  E-value=4.7e-08  Score=95.73  Aligned_cols=122  Identities=11%  Similarity=-0.029  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC--HHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY--SKALL  123 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~--~kAl~  123 (429)
                      ......+..|...|+|++|...|..++...|.+.     +++.+|.+++++  ++|++|+..++.++...+..  ..+++
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-----~~~~~a~l~~~~--~r~~dA~~~l~~a~~~~d~~~~~~a~~  175 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-----VAWMKAVVYGAA--ERWTDVIDQVKSAGKWPDKFLAGAAGV  175 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-----HHHHHHHHHHHT--TCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-----HHHHHHHHHHHc--CCHHHHHHHHHHhhccCCcccHHHHHH
Confidence            3455678889999999999999999887666432     778899999999  99999999999887754222  35899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHhhccccc
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKE--PK-NIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~--P~-n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+|.++..+|++++|+..|++++.-.  |. ...++..++.++..+++...+..
T Consensus       176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~  229 (282)
T 4f3v_A          176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA  229 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999654  65 66799999999999988777666

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.48  E-value=2.3e-07  Score=95.97  Aligned_cols=112  Identities=16%  Similarity=0.082  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014213           45 SQELKEEGNKLFQ-------KRDHG-------GALLKYEKALK-LLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECN  109 (429)
Q Consensus        45 A~~lk~~Gn~lf~-------~gdye-------eAl~~Y~kALe-l~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~  109 (429)
                      +..|...|..+..       .|+++       +|+..|++|+. +.|.+..    +|.+++..+.++  |++++|+..|+
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~----l~~~~~~~~~~~--g~~~~A~~~~~  345 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML----LYFAYADYEESR--MKYEKVHSIYN  345 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH----HHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH----HHHHHHHHHHhc--CCHHHHHHHHH
Confidence            4456778888776       79987       99999999998 8998774    999999999999  99999999999


Q ss_pred             HHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213          110 LALEVTPLYS-KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus       110 ~ALeldP~~~-kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      ++++++|.++ .+|..++.++...|++++|...|++|+...|.+...+...+.+
T Consensus       346 ~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~  399 (530)
T 2ooe_A          346 RLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  399 (530)
T ss_dssp             HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred             HHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            9999999985 6999999999999999999999999999998876665554444

>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2

Probab=98.42  E-value=1.5e-06  Score=71.30  Aligned_cols=77  Identities=21%  Similarity=0.267  Sum_probs=68.7

Q ss_pred             CceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHh---hccCCcEEEE
Q 014213          260 PKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEAS---AEMQGSVRLF  336 (429)
Q Consensus       260 ~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~---~~~~~~~rl~  336 (429)
                      ..++||+-|+.+.|+++++..++|.+|+.++...|+  ..+.|.|.| ..=+|.|++++||+-|++.   +..+.++||+
T Consensus         7 ~dvRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fG--q~ldL~y~n-~EllIpl~sQeDLDkaIellDrss~~kSLrIl   83 (103)
T 2cu1_A            7 GDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG--QSMDLHYTN-NELVIPLTTQDDLDKAVELLDRSIHMKSLKIL   83 (103)
T ss_dssp             CEEEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHS--SCEEEEECS-SSSCEECCSHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred             CcEEEEEEecCeEEEEeccCCccHHHHHHHHHHHhC--CeeeEEEec-ceEEEeccCHHHHHHHHHHHccCCcccceEEE
Confidence            578999999999999999999999999999999995  589999997 6689999999999999765   4557789998


Q ss_pred             EEe
Q 014213          337 VVG  339 (429)
Q Consensus       337 v~e  339 (429)
                      +..
T Consensus        84 L~~   86 (103)
T 2cu1_A           84 LVI   86 (103)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            774

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.41  E-value=2.6e-06  Score=73.11  Aligned_cols=98  Identities=11%  Similarity=-0.053  Sum_probs=82.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQ----MGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~k----l~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .|..|+..+.+++|+..|.+|.+.  .++    .+++++|.+|..    .  +++.+|+.++++|.+.  .++.+++++|
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~----~a~~~Lg~~y~~G~g~~--~d~~~A~~~~~~Aa~~--g~~~a~~~Lg  100 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSG----NGCRFLGDFYENGKYVK--KDLRKAAQYYSKACGL--NDQDGCLILG  100 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHCSSSC--CCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCH----HHHHHHHHHHHcCCCCC--ccHHHHHHHHHHHHcC--CCHHHHHHHH
Confidence            778888888899999999999987  344    488999999998    6  8999999999999887  6799999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213          127 RCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAE  160 (429)
Q Consensus       127 ~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La  160 (429)
                      .+|..    .+++++|+.+|++|..+  +++.+...++
T Consensus       101 ~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~  136 (138)
T 1klx_A          101 YKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN  136 (138)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred             HHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence            99999    89999999999999987  4555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.40  E-value=3.5e-06  Score=85.30  Aligned_cols=132  Identities=11%  Similarity=-0.011  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCC-C--C--HHHHHHHHH---HHHH
Q 014213           45 SQELKEEGNKLFQKRD---HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGL-S--E--YPRAIHECN---LALE  113 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gd---yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~-g--~--y~eAi~~~~---~ALe  113 (429)
                      |-.+..+|..++..++   +.+|+.+|++||+++|+++.    +|..++.||+.+.. +  .  ...++....   .++.
T Consensus       196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~----A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~  271 (372)
T 3ly7_A          196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY----ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLP  271 (372)
T ss_dssp             GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcc
Confidence            4557778888887655   58899999999999999874    66666666653200 0  0  111111111   1224


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          114 VTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       114 ldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      .+|..+.+|..+|.++...|++++|+..+++|+.++|+ ..++..++.++...++...+..  +++..|+
T Consensus       272 ~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          272 ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            55777777777777777777777777777777777753 5566677777777766555555  3344444

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.37  E-value=1.1e-06  Score=91.98  Aligned_cols=102  Identities=8%  Similarity=-0.102  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKL----LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV-----  114 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel----~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel-----  114 (429)
                      .+..+.+.|..|...|+|++|+.+|.++|.+    .+.++++.+..++|+|.+|..+  |+|++|+..+++|+++     
T Consensus       350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~--G~~~eA~~~~~~Al~i~~~~l  427 (490)
T 3n71_A          350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHA--GHIEVGHGMICKAYAILLVTH  427 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHh
Confidence            4566889999999999999999999999976    4667778999999999999999  9999999999999976     


Q ss_pred             CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213          115 TPLYS---KALLKRARCYEALNRLDLAFRDVTTVLN  147 (429)
Q Consensus       115 dP~~~---kAl~~rA~ay~~LG~~deAl~~~~kAL~  147 (429)
                      -|+++   ..+-.++.++..++.|++|...|.++..
T Consensus       428 G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          428 GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46664   4567889999999999999999988754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.34  E-value=2.8e-06  Score=86.86  Aligned_cols=110  Identities=12%  Similarity=-0.036  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhC
Q 014213           44 MSQELKEEGNKLFQK-----RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS---EYPRAIHECNLALEVT  115 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~-----gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g---~y~eAi~~~~~ALeld  115 (429)
                      .+..+...|..|...     +++++|+..|.+|++..+  .    .+++++|.+|...  |   ++++|+..|++|++. 
T Consensus       290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~----~a~~~lg~~y~~~--g~~~~~~~A~~~~~~a~~~-  360 (490)
T 2xm6_A          290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--A----TAQANLGAIYFRL--GSEEEHKKAVEWFRKAAAK-  360 (490)
T ss_dssp             CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--H----HHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--H----HHHHHHHHHHHhC--CCcccHHHHHHHHHHHHHC-
Confidence            355667777777776     778888888887777532  2    3667777777775  4   677777777777776 


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          116 PLYSKALLKRARCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       116 P~~~kAl~~rA~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                       .++.+++.+|.+|..    .+++++|+.+|++++..  +++.++..++.++..
T Consensus       361 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          361 -GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYY  411 (490)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHc
Confidence             467777777777777    77777777777777765  357777777777765

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.28  E-value=4.6e-06  Score=72.14  Aligned_cols=104  Identities=17%  Similarity=0.099  Sum_probs=87.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcC
Q 014213           59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPR---AIHECNLALEVT-P-LYSKALLKRARCYEALN  133 (429)
Q Consensus        59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~e---Ai~~~~~ALeld-P-~~~kAl~~rA~ay~~LG  133 (429)
                      .....+-..|.+++...+.+.    .+.++.|.|+.+.  .....   +|..++..+..+ | .....+|.+|.+++.+|
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~----~~~F~yAw~Lv~S--~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg   88 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRT--RYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK   88 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTS--SSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccCCCcH----HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence            345567778888888766555    3778899999887  55555   899999888877 5 56789999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          134 RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       134 ~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      +|+.|+.+++.+|.++|+|..+......+...+..
T Consensus        89 ~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           89 EYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998887754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.26  E-value=1.9e-05  Score=80.61  Aligned_cols=110  Identities=14%  Similarity=0.039  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHHhC
Q 014213           44 MSQELKEEGNKLFQ----KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQ----MGLSEYPRAIHECNLALEVT  115 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~----~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~k----l~~g~y~eAi~~~~~ALeld  115 (429)
                      .+..+...|..|+.    .+++++|+..|.+|++.  .++    .+++++|.+|+.    .  +++++|+..|++|++. 
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~----~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~a~~~-  108 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYT----PAEYVLGLRYMNGEGVP--QDYAQAVIWYKKAALK-  108 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHT-
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCH----HHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHC-
Confidence            45667788888888    88888888888888876  333    377788888887    6  7888888888888765 


Q ss_pred             CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          116 PLYSKALLKRARCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       116 P~~~kAl~~rA~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                       .++.+++.+|.+|..    .+++++|+..|++++..  +++.++..++.++..
T Consensus       109 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  159 (490)
T 2xm6_A          109 -GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFE  159 (490)
T ss_dssp             -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence             477888888888887    77888888888888764  577778888777654

>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A

Probab=98.23  E-value=3.9e-06  Score=67.77  Aligned_cols=71  Identities=18%  Similarity=0.270  Sum_probs=61.4

Q ss_pred             CCCCceeEEEEeCCceEEEEcc-CCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh
Q 014213          257 DNEPKKTVKLVFGEDIRVAQLP-LNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA  327 (429)
Q Consensus       257 ~~~~~~~vK~~~~~DiR~~~i~-~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~  327 (429)
                      ...--++||.--++|+-|.+=+ ..++|.+|.+.|++..|....-..-|.|||||.||+-||+||+--+++.
T Consensus        12 a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~aT~TAFeYEDE~gDRITVRSDeE~kAMlsyy   83 (106)
T 2npt_A           12 NQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSYY   83 (106)
T ss_dssp             -CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCCSEEEEECTTSCEEEECSHHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCccceeeeeeeccccCCeeEEcchHHHHHHHHHH
Confidence            3455688999888999998864 7799999999999999999999999999999999999999998766654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.16  E-value=1e-05  Score=82.73  Aligned_cols=104  Identities=13%  Similarity=0.038  Sum_probs=85.1

Q ss_pred             HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           49 KEEGNKLFQK----RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYM-QMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        49 k~~Gn~lf~~----gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~-kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+.|..|...    +++++|+..|.+|+   |.++.    +++++|.+|+ ....+++++|+.+|++|++..  ++.+++
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~----a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~  287 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA----SWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAEL  287 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH----HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            6677777655    78999999999988   77774    8889999844 112489999999999988654  889999


Q ss_pred             HHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          124 KRARCYEALN-----RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       124 ~rA~ay~~LG-----~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      ++|.+|. .|     ++++|+.+|++|.   |+++.+...++.++..
T Consensus       288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~  330 (452)
T 3e4b_A          288 LLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence            9999998 66     9999999999998   8899999999987764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=1.2e-05  Score=79.28  Aligned_cols=130  Identities=11%  Similarity=0.056  Sum_probs=98.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-----  115 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-----  115 (429)
                      .....+.+.|..|+..|+|++|+..|.+++.+.+....  ....++.+++.++...  ++++.|+..|..++.+.     
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~  130 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVP--DSLDDQIFVCEKSIEFAKREKR  130 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCC--SCHHHHHHHHHHHHHHHHHSSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHhCc
Confidence            44556889999999999999999999999998775432  1234566777777666  88999999998888763     


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          116 -PLYSKALLKRARCYEALNRLDLAFRDVTTVLNK------EPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       116 -P~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l------~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                       +...+++.++|.+|..+|+|++|+..++.++..      .|....++..+.+++..+++...+..
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~  196 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKA  196 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence             334678888999999999999999999888875      22335677777777777766554444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.08  E-value=1.6e-05  Score=81.42  Aligned_cols=109  Identities=12%  Similarity=0.047  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           47 ELKEEGNKLFQKR---DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQM--GLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        47 ~lk~~Gn~lf~~g---dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl--~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      .+...|..|...|   ++++|+..|.+|++..|...    ..++++|.+|...  ..+++++|+..|+++.   |.++.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a----~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a  250 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA----QRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPAS  250 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence            4678899999999   99999999999999988766    3668899998542  1258999999999998   899999


Q ss_pred             HHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          122 LLKRARC-Y--EALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       122 l~~rA~a-y--~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      ++++|.+ |  ...+++++|+.+|++++..  +++.+...++.++.
T Consensus       251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            9999998 4  5788999999999999864  58999999998886

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.04  E-value=3.2e-05  Score=66.23  Aligned_cols=93  Identities=14%  Similarity=-0.023  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 014213           59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEA----LNR  134 (429)
Q Consensus        59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~----LG~  134 (429)
                      +++++|+..|.+|.+.....      +.  +|.+|...  ..+++|+..+++|.+.  .++.+++++|.+|..    .++
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~------a~--lg~~y~~g--~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d   76 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF------GC--LSLVSNSQ--INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD   76 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT------HH--HHHHTCTT--SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred             cCHHHHHHHHHHHHcCCCHh------hh--HHHHHHcC--CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCcc
Confidence            57899999999999986332      33  89999887  8899999999999987  689999999999999    899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       135 ~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      +++|+.+|++|...  +++.+...++.++..
T Consensus        77 ~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           77 LRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            99999999999987  789999999998875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.95  E-value=2e-05  Score=77.78  Aligned_cols=99  Identities=15%  Similarity=0.109  Sum_probs=84.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--CccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CCCCHHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRN--HIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV------TPLYSKA  121 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~--~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel------dP~~~kA  121 (429)
                      ..|..+...|+++.|+..|.+++...+..  ...++.++.++|.+|..+  |+|.+|+..+..++..      .+....+
T Consensus       100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~l~~~~~~~~~~~~~~~~~~~  177 (434)
T 4b4t_Q          100 LIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQK--KQYKDSLALINDLLREFKKLDDKPSLVDV  177 (434)
T ss_dssp             HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTSSCSTHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHc--cChHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            45666667899999999999999886543  235678999999999999  9999999999999876      2345678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKEP  150 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~P  150 (429)
                      ++..+.+|..+|+|+.|...+++++.+.+
T Consensus       178 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          178 HLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.95  E-value=4.1e-05  Score=88.66  Aligned_cols=107  Identities=12%  Similarity=0.173  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC---------
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP---------  116 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP---------  116 (429)
                      ..+...|+.++..|+|++|+.+|.+|            ..|..+|.||.++  |+|++|++.+.+|....+         
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA------------~ny~rLA~tLvkL--ge~q~AIEaarKA~n~~aWkev~~acv 1261 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHL--GEYQAAVDGARKANSTRTWKEVCFACV 1261 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh------------hHHHHHHHHHHHh--CCHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            45778999999999999999999996            2678899999999  999999999999854433         


Q ss_pred             ----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          117 ----------------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       117 ----------------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                                      .++..+..++..|..+|.|++|+..|+++|.++|.+......++.++..-
T Consensus      1262 e~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1262 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             hhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence                            23445667778899999999999999999999999999988888776543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.93  E-value=2.5e-05  Score=77.26  Aligned_cols=98  Identities=10%  Similarity=-0.138  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC------CCH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLP--RNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP------LYS  119 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P--~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP------~~~  119 (429)
                      +...|..++..|++++|+..|.++|...|  .+.+    ++..++.+|+++  |+++.|...+++..+++|      +..
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~le----a~~l~vqi~L~~--~r~d~A~k~l~~~~~~~~d~~~~~d~~  176 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTE----LLLLAIEVALLN--NNVSTASTIFDNYTNAIEDTVSGDNEM  176 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHhcCccccccchHH
Confidence            45677777777888888877777777765  5543    555566666666  666666666666666665      222


Q ss_pred             HHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCC
Q 014213          120 KALLKRARCYEALN--RLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       120 kAl~~rA~ay~~LG--~~deAl~~~~kAL~l~P~  151 (429)
                      ..++.-|.+....|  ++.+|+..|+++....|+
T Consensus       177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            22222232333334  555555555555444443

>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A

Probab=97.92  E-value=0.00016  Score=58.04  Aligned_cols=78  Identities=10%  Similarity=0.198  Sum_probs=68.8

Q ss_pred             CceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHh---hccCCcEEEE
Q 014213          260 PKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEAS---AEMQGSVRLF  336 (429)
Q Consensus       260 ~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~---~~~~~~~rl~  336 (429)
                      ..++||+-|..+-|.++++.-+.|.+|..+|...|+  ..+.|.|.. ..=+|.+.+++||+-|++.   +..+.++||.
T Consensus         3 ~dvRIKfE~~gEKRIi~f~RPvkf~dl~qkv~~afG--q~ldl~y~n-nEL~iPL~~Q~DLDkAvelLDrs~~mkSLRIl   79 (94)
T 2jrh_A            3 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG--QPLDLHYMN-NELSILLKNQDDLDKAIDILDRSSSMKSLRIL   79 (94)
T ss_dssp             CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHC--SSEEEEEEC-SSCEEECCSHHHHHHHHHHHHHSTTTTEEEEE
T ss_pred             CceEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeeEEec-ceeEEeccCHHHHHHHHHHhccCccccceEEE
Confidence            468999999999999999999999999999999994  679999995 6689999999999999765   4557789998


Q ss_pred             EEee
Q 014213          337 VVGV  340 (429)
Q Consensus       337 v~e~  340 (429)
                      +..-
T Consensus        80 L~~~   83 (94)
T 2jrh_A           80 LLSQ   83 (94)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            8753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.91  E-value=2.5e-05  Score=80.93  Aligned_cols=104  Identities=13%  Similarity=0.189  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC----------
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP----------  116 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP----------  116 (429)
                      .+...|+.++..|.|++|..+|.++       .     .|.++|.|+.++  |+|++|+..+.+|.  +|          
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a-------~-----n~~~LA~~L~~L--g~yq~AVea~~KA~--~~~~Wk~v~~aC  187 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV-------S-----NFGRLASTLVHL--GEYQAAVDGARKAN--STRTWKEVCFAC  187 (449)
T ss_dssp             -------------CTTTHHHHHHHT-------T-----CHHHHHHHHHTT--TCHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-------h-----hHHHHHHHHHHh--ccHHHHHHHHHHcC--CchhHHHHHHHH
Confidence            6778888888888888888888876       1     457788888888  88888888888882  22          


Q ss_pred             -----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213          117 -----------------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       117 -----------------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                                       .++.-+..+..+|...|++++|+..++++|.+++.+..++..++.++...
T Consensus       188 v~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          188 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             HHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             HHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                             11122233446788888999999999999999988888888887766543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.90  E-value=4.6e-05  Score=74.84  Aligned_cols=89  Identities=13%  Similarity=0.070  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCH
Q 014213           61 HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG---LSEYPRAIHECNLALEVTPLY-SKALLKRARCYEA-LNRL  135 (429)
Q Consensus        61 yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~---~g~y~eAi~~~~~ALeldP~~-~kAl~~rA~ay~~-LG~~  135 (429)
                      ...|...+++||+++|+...  ..+|..+|..|.++-   -|+.++|...|++||+++|+. ..+++..|..|.. .|++
T Consensus       179 l~~A~a~lerAleLDP~~~~--GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQE--GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHH--HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhCCCccc--CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            56788999999999998321  358999999999931   189999999999999999975 9999999999988 5999


Q ss_pred             HHHHHHHHHHHHhCCC
Q 014213          136 DLAFRDVTTVLNKEPK  151 (429)
Q Consensus       136 deAl~~~~kAL~l~P~  151 (429)
                      ++|...+++|+..+|.
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999998776

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.86  E-value=5e-05  Score=61.50  Aligned_cols=68  Identities=22%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213           45 SQELKEEGNKLFQKRD---HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gd---yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~  118 (429)
                      +..+...|..++..++   ..+|...+++||.++|++..    ++..+|..+++.  |+|++|+..++++++.+|..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r----A~~~lg~~~~~~--g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA----ALSLIANDHFIS--FRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCC
Confidence            3457788888876655   79999999999999999985    889999999999  99999999999999999983

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.75  E-value=0.00017  Score=62.81  Aligned_cols=86  Identities=15%  Similarity=0.077  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMGL-SEYPRAIHECNLALEVTPL-YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~-g~y~eAi~~~~~ALeldP~-~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      ...++.|.|+.+.+. .+..++|..++..+..+|. ....+|.+|.+++.+|+|+.|+++++.+|.++|+|..|......
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            467788888888621 1455799999999999984 57799999999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 014213          162 VKKELEKR  169 (429)
Q Consensus       162 l~~~l~e~  169 (429)
                      +...+...
T Consensus       121 Ie~ki~kd  128 (134)
T 3o48_A          121 VEDKIQKE  128 (134)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            98888643

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.75  E-value=8.5e-05  Score=76.32  Aligned_cols=88  Identities=14%  Similarity=0.122  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh----
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKL----LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV----  114 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel----~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel----  114 (429)
                      ..+..+.+.|..|...|+|++|+.+|.++|.+    .+.++++.+..++|+|.+|..+  |+|++|+..+++|+++    
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~--g~~~eA~~~~~~Al~i~~~~  404 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQ--GMFPQAMKNLRLAFDIMRVT  404 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHh
Confidence            34667889999999999999999999999975    5677778999999999999999  9999999999999976    


Q ss_pred             -CCCCHH---HHHHHHHHHHHc
Q 014213          115 -TPLYSK---ALLKRARCYEAL  132 (429)
Q Consensus       115 -dP~~~k---Al~~rA~ay~~L  132 (429)
                       -|+++.   ++.+++.|...+
T Consensus       405 lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          405 HGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             TCTTSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHH
Confidence             466654   456666666544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.74  E-value=8e-05  Score=66.35  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHH
Q 014213           45 SQELKEEGNKLFQKR---DHGGALLKYEKALKLL-PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        45 A~~lk~~Gn~lf~~g---dyeeAl~~Y~kALel~-P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~k  120 (429)
                      .+..++.|..+.+.+   ++.+++..++..++.+ |.+   ...+++++|..|+++  ++|.+|+.+|+++|+++|+|..
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~---~rd~lY~LAv~~~kl--~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE---QRDYVFYLAVGNYRL--KEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH---HHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc---hHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHH
Confidence            356778899999988   7779999999999988 522   235889999999999  9999999999999999999998


Q ss_pred             HHHHHHHH
Q 014213          121 ALLKRARC  128 (429)
Q Consensus       121 Al~~rA~a  128 (429)
                      |...+-.+
T Consensus       107 A~~Lk~~i  114 (152)
T 1pc2_A          107 AKELERLI  114 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87665444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.72  E-value=0.00017  Score=71.29  Aligned_cols=82  Identities=13%  Similarity=0.073  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Q 014213           64 ALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP--LYSKALLKRARCYEALNRLDLAFRD  141 (429)
Q Consensus        64 Al~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP--~~~kAl~~rA~ay~~LG~~deAl~~  141 (429)
                      |+..+++.+...+.+.    ..+..+|.+|...  |++++|+..|.++|..+|  .+..++..++.+|..+|+++.|.+.
T Consensus        85 a~~~l~~l~~~~~~~~----~~~~~la~i~~~~--g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~  158 (310)
T 3mv2_B           85 NIEELENLLKDKQNSP----YELYLLATAQAIL--GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI  158 (310)
T ss_dssp             CCHHHHHTTTTSCCCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCc----HHHHHHHHHHHHc--CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            8888988887654443    3556899999999  999999999999999997  9999999999999999999999999


Q ss_pred             HHHHHHhCCC
Q 014213          142 VTTVLNKEPK  151 (429)
Q Consensus       142 ~~kAL~l~P~  151 (429)
                      ++++.+.+|+
T Consensus       159 l~~~~~~~~d  168 (310)
T 3mv2_B          159 FDNYTNAIED  168 (310)
T ss_dssp             HHHHHHHSCH
T ss_pred             HHHHHhcCcc
Confidence            9999999993

>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2

Probab=97.72  E-value=0.00031  Score=57.01  Aligned_cols=77  Identities=21%  Similarity=0.270  Sum_probs=67.9

Q ss_pred             CceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHh---hccCCcEEEE
Q 014213          260 PKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEAS---AEMQGSVRLF  336 (429)
Q Consensus       260 ~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~---~~~~~~~rl~  336 (429)
                      ..++||+-|..+-|.++++.-+.|.+|..+|...|+  ..+.|.|.. ..=+|.+.+++||+-|++.   +..+.++||.
T Consensus        19 ~dvRIKfE~~gEkRIi~f~RPv~f~el~~kv~~afG--q~ldl~y~n-nEL~iPL~~Q~DLDkAvelLDrs~~~kSLrIl   95 (100)
T 2npt_B           19 NDVRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG--QSMDLHYTN-NELVIPLTTQDDLDKAVELLDRSIHMKSLKIL   95 (100)
T ss_dssp             CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHT--SCEEEEEEE-TTEEEECCCHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred             cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeeEEec-ceeEEecccHHHHHHHHHHhccCccccceEEE
Confidence            578999999999999999999999999999999994  679999995 6678999999999999765   3557779988


Q ss_pred             EEe
Q 014213          337 VVG  339 (429)
Q Consensus       337 v~e  339 (429)
                      +..
T Consensus        96 L~~   98 (100)
T 2npt_B           96 LVI   98 (100)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            864

>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B

Probab=97.71  E-value=0.00035  Score=57.42  Aligned_cols=77  Identities=10%  Similarity=0.207  Sum_probs=67.9

Q ss_pred             CceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHh---hccCCcEEEE
Q 014213          260 PKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEAS---AEMQGSVRLF  336 (429)
Q Consensus       260 ~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~---~~~~~~~rl~  336 (429)
                      ..++||+-|..+-|.++++.-+.|.+|..++...|+  ..+.|.|.. ..=+|.+.+++||+-|++.   +..+.++||.
T Consensus        30 ~dvRIKfE~~gEKRIiqf~RPvkf~dl~qkv~~afG--q~ldl~y~n-nEL~IPL~~Q~DLDkAvelLDrs~~mkSLRIl  106 (111)
T 2c60_A           30 SDVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG--QPLDLHYMN-NELSILLKNQDDLDKAIDILDRSSSMKSLRIL  106 (111)
T ss_dssp             CCEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHS--SCCEEEEEC-SSCEEECCSHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred             cceEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeeEEec-ceEEEecccHHHHHHHHHHhccCccccceEEE
Confidence            578999999999999999999999999999999994  678999995 6688999999999999765   3557779988


Q ss_pred             EEe
Q 014213          337 VVG  339 (429)
Q Consensus       337 v~e  339 (429)
                      +..
T Consensus       107 L~~  109 (111)
T 2c60_A          107 LLS  109 (111)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            763

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.70  E-value=0.00044  Score=60.89  Aligned_cols=87  Identities=15%  Similarity=0.094  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMG-LSEYPRAIHECNLALEVTPL-YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus        84 ~l~~nrA~~y~kl~-~g~y~eAi~~~~~ALeldP~-~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      ...++.|.|+.+.+ +.+..++|..++..+..+|. ....+|.+|.+++.+|+|.+|+++++.+|.++|+|.++......
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            36788888888862 12345799999999999985 56789999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 014213          162 VKKELEKRG  170 (429)
Q Consensus       162 l~~~l~e~~  170 (429)
                      +...+...+
T Consensus       120 Ie~~i~kdG  128 (144)
T 1y8m_A          120 VEDKIQKET  128 (144)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhc
Confidence            998886544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.63  E-value=0.00016  Score=74.57  Aligned_cols=76  Identities=16%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKL----LPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV-----  114 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel----~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel-----  114 (429)
                      .+..+.+.|..|...|+|++|+.+|+++|.+    .+.++++.+..++|+|.+|..+  |+|++|+..+++|+++     
T Consensus       339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~q--g~~~eA~~~~~~Al~i~~~~l  416 (433)
T 3qww_A          339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGL--ENKAAGEKALKKAIAIMEVAH  416 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHc
Confidence            4566889999999999999999999999975    4667778999999999999999  9999999999999976     


Q ss_pred             CCCCHHH
Q 014213          115 TPLYSKA  121 (429)
Q Consensus       115 dP~~~kA  121 (429)
                      .|+++..
T Consensus       417 G~~Hp~~  423 (433)
T 3qww_A          417 GKDHPYI  423 (433)
T ss_dssp             CTTCHHH
T ss_pred             CCCChHH
Confidence            4666543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.56  E-value=0.0003  Score=81.62  Aligned_cols=90  Identities=11%  Similarity=0.028  Sum_probs=72.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHH--------------------HhC--CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 014213           51 EGNKLFQKRDHGGALLKYEKAL--------------------KLL--PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHEC  108 (429)
Q Consensus        51 ~Gn~lf~~gdyeeAl~~Y~kAL--------------------el~--P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~  108 (429)
                      .|..+...|.|++|...|+++-                    ++.  ...    ..+|+++|.++..+  |+|++|+..|
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~----p~vWsqLAKAql~~--G~~kEAIdsY 1128 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE----PAVWSQLAKAQLQK--GMVKEAIDSY 1128 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhC--CCHHHHHHHH
Confidence            3667777777777766666542                    111  111    35899999999999  9999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 014213          109 NLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK  151 (429)
Q Consensus       109 ~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~  151 (429)
                      .+|     +++.+|++.|.++..+|+|++|+++|.+|.+..+.
T Consensus      1129 iKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e 1166 (1630)
T 1xi4_A         1129 IKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE 1166 (1630)
T ss_pred             Hhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc
Confidence            776     89999999999999999999999999999988754

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.53  E-value=0.00062  Score=61.38  Aligned_cols=114  Identities=16%  Similarity=0.121  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CCC
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-----DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT---PLY  118 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-----~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld---P~~  118 (429)
                      .+++....++..+.|+.|+..++.++.+..++..     ..+.++..+|.+++..  ++|.+|...|.+||++.   ++.
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~--~eyrrA~~~y~qALq~~k~l~k~   99 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD--KEYRNAVSKYTMALQQKKALSKT   99 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHHHhcC
Confidence            4788889999999999999999998877643332     3466788899999999  99999999999998653   211


Q ss_pred             ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213          119 ----------------------SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK  163 (429)
Q Consensus       119 ----------------------~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~  163 (429)
                                            ....|++|.||..++++++|+..++..-. .-.++.+...|++++
T Consensus       100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence                                  25779999999999999999988663211 224666777777664

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.32  E-value=0.00064  Score=66.72  Aligned_cols=82  Identities=10%  Similarity=-0.036  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH-Hhhc
Q 014213          100 EYPRAIHECNLALEVTPL--YSKALLKRARCYEAL-----NRLDLAFRDVTTVLNKEPKN-IMAAEIAERVKKEL-EKRG  170 (429)
Q Consensus       100 ~y~eAi~~~~~ALeldP~--~~kAl~~rA~ay~~L-----G~~deAl~~~~kAL~l~P~n-~~a~~~La~l~~~l-~e~~  170 (429)
                      ....|...+++|+++||+  +..+|.-+|..|..+     |+.+.|..+|++||.++|+. ..++...+.-+... ++..
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            468899999999999999  566999999999996     99999999999999999975 89988888876553 4444


Q ss_pred             cccc--cccccCC
Q 014213          171 LRVN--DTVIELP  181 (429)
Q Consensus       171 ~a~~--e~~~~L~  181 (429)
                      .+..  +++...+
T Consensus       258 ~a~~~L~kAL~a~  270 (301)
T 3u64_A          258 GFDEALDRALAID  270 (301)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHcCC
Confidence            3333  5555555

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.97  E-value=0.0003  Score=72.86  Aligned_cols=134  Identities=10%  Similarity=0.034  Sum_probs=104.3

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHH-----------------------HHHHHHHH
Q 014213           37 DTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYL-----------------------RSNMAACY   93 (429)
Q Consensus        37 d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l-----------------------~~nrA~~y   93 (429)
                      +...+...+..+...|+.+++.|+|++|++.|.+|.  +|........+                       ...+..+|
T Consensus       140 eA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Y  217 (449)
T 1b89_A          140 AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYY  217 (449)
T ss_dssp             THHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHH
Confidence            344556777889999999999999999999999992  22100000111                       12344788


Q ss_pred             HHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHH
Q 014213           94 MQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYE--ALNRLDLAFRDVTTVLNKEP-----KNIMAAEIAERVKKEL  166 (429)
Q Consensus        94 ~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~--~LG~~deAl~~~~kAL~l~P-----~n~~a~~~La~l~~~l  166 (429)
                      .+.  |.|++|+..++.+|.+++.+..++..+|.+|.  ..++..++++.|...+.+.|     .+...|..+.-++...
T Consensus       218 ek~--G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~  295 (449)
T 1b89_A          218 QDR--GYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY  295 (449)
T ss_dssp             HHT--TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHC--CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence            888  99999999999999999999999999988885  45688899999988888888     7788888888888777


Q ss_pred             Hhhccccc
Q 014213          167 EKRGLRVN  174 (429)
Q Consensus       167 ~e~~~a~~  174 (429)
                      ++...|+.
T Consensus       296 ~e~d~A~~  303 (449)
T 1b89_A          296 EEYDNAII  303 (449)
T ss_dssp             TCHHHHHH
T ss_pred             chHHHHHH
Confidence            77665555

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.83  E-value=0.02  Score=57.76  Aligned_cols=104  Identities=13%  Similarity=0.020  Sum_probs=86.5

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc------c------------HHHHHHHHHHHHHHcCCCCHHH
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI------D------------VSYLRSNMAACYMQMGLSEYPR  103 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~------~------------~a~l~~nrA~~y~kl~~g~y~e  103 (429)
                      +.....+...|......|+.+.|+..|.+|+.+.....-      .            +..+...++.+++.+  |++.+
T Consensus       112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~--g~~~~  189 (388)
T 2ff4_A          112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIAC--GRASA  189 (388)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHH
Confidence            345566777888888899999999999999998743211      0            123455677888888  99999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014213          104 AIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN  147 (429)
Q Consensus       104 Ai~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~  147 (429)
                      |+..+..++..+|-+-.+|..+-.+|+..|+..+|+..|+++-.
T Consensus       190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.57  E-value=0.0066  Score=61.35  Aligned_cols=75  Identities=12%  Similarity=0.010  Sum_probs=65.1

Q ss_pred             HhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213           73 KLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus        73 el~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      .++|.++    .+|.-++..++..  |++++|+..+++|+.++|. ..+|..+|.++...|++++|++.|.+|+.++|..
T Consensus       271 ~~~~~~a----~~~~alal~~l~~--gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          271 PELNNLS----IIYQIKAVSALVK--GKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             GGGTTCH----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             ccCCcCH----HHHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            4456555    4777777777777  9999999999999999975 6788999999999999999999999999999987


Q ss_pred             HH
Q 014213          153 IM  154 (429)
Q Consensus       153 ~~  154 (429)
                      +.
T Consensus       344 ~t  345 (372)
T 3ly7_A          344 NT  345 (372)
T ss_dssp             HH
T ss_pred             Ch
Confidence            64

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.38  E-value=0.0083  Score=51.64  Aligned_cols=78  Identities=15%  Similarity=0.060  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           46 QELKEEGNKLFQKRDHGG---ALLKYEKALKLL-PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyee---Al~~Y~kALel~-P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ..-++.|-.+....+..+   ++..++..++.. |   ...--+++.+|..|+++  |+|.+|+..|+..|+++|+|..|
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p---~~~Rd~lY~LAvg~ykl--g~Y~~A~~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK---EEQRDYVFYLAVGNYRL--KEYEKALKYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH---HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhCCCCHHH
Confidence            345566777777777766   888888877754 3   12335788899999999  99999999999999999999988


Q ss_pred             HHHHHHH
Q 014213          122 LLKRARC  128 (429)
Q Consensus       122 l~~rA~a  128 (429)
                      .-.+..+
T Consensus       111 ~~Lk~~i  117 (126)
T 1nzn_A          111 KELERLI  117 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7665444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.23  E-value=0.028  Score=61.05  Aligned_cols=82  Identities=12%  Similarity=0.072  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014213           61 HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI-HECNLALEVTPLYSKALLKRARCYEALNRLDLAF  139 (429)
Q Consensus        61 yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi-~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl  139 (429)
                      .......|++||...|.++.    +|...|..+...  |+.++|+ ..+.+|+...|.+...|+..+..+...|+++.|.
T Consensus       325 ~~Rv~~~Ye~aL~~~p~~~~----lW~~ya~~~~~~--~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR  398 (679)
T 4e6h_A          325 KARMTYVYMQAAQHVCFAPE----IWFNMANYQGEK--NTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIE  398 (679)
T ss_dssp             HHHHHHHHHHHHHHTTTCHH----HHHHHHHHHHHH--SCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHhc--CcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            34567889999999999885    888888888887  8889997 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 014213          140 RDVTTVLNK  148 (429)
Q Consensus       140 ~~~~kAL~l  148 (429)
                      ..|++++..
T Consensus       399 ~iyek~l~~  407 (679)
T 4e6h_A          399 TTILSCIDR  407 (679)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999975

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.00  E-value=0.065  Score=47.03  Aligned_cols=78  Identities=10%  Similarity=-0.037  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           46 QELKEEGNKLFQKRDHG---GALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdye---eAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.-++.+-.+....+..   .++..++..++..|...   -.+++.+|..|+++  |+|.+|+.+++..|+++|+|..|.
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~---RdcLYyLAvg~ykl--~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYKL--GEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH---HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch---hHHHHHHHHHHHHh--hhHHHHHHHHHHHHhcCCCcHHHH
Confidence            34566677777776654   68899999999777532   35778899999999  999999999999999999998876


Q ss_pred             HHHHHH
Q 014213          123 LKRARC  128 (429)
Q Consensus       123 ~~rA~a  128 (429)
                      -.+..+
T Consensus       115 ~Lk~~I  120 (144)
T 1y8m_A          115 ALKSMV  120 (144)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=95.95  E-value=0.036  Score=60.17  Aligned_cols=114  Identities=7%  Similarity=-0.021  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-----------
Q 014213           47 ELKEEGNKLFQKRDHGGAL-LKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV-----------  114 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl-~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel-----------  114 (429)
                      -|..-+..+...|+.++|. ..|.+|+...|.+.    .+|...+..+.+.  |++++|...|++++..           
T Consensus       345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~----~Lwl~~a~~ee~~--~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA----VLAFSLSEQYELN--TKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            3556677777888889997 99999999999876    4788888888888  9999999999999975           


Q ss_pred             CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHH
Q 014213          115 TPL-----------YSKALLKRARCYEALNRLDLAFRDVTTVLNK-EPKNIMAAEIAERVKKEL  166 (429)
Q Consensus       115 dP~-----------~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l-~P~n~~a~~~La~l~~~l  166 (429)
                      .|.           ...+|...+......|..+.|...|.+|++. .+.....+...+.+...+
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~  482 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI  482 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh
Confidence            253           4567888888888899999999999999987 434445555444444433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.95  E-value=0.1  Score=46.34  Aligned_cols=106  Identities=10%  Similarity=0.052  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHcCCH------HHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC
Q 014213           48 LKEEGNKLFQKRDH------GGALLKYEKALKLLPRNHI----DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL  117 (429)
Q Consensus        48 lk~~Gn~lf~~gdy------eeAl~~Y~kALel~P~~~~----~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~  117 (429)
                      |..-...+=+.|+.      +.-++.|++|+...|....    ..+.+|.+.|. +..+  ++.++|...|+.++.+...
T Consensus        16 W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei--~D~d~aR~vy~~a~~~hKk   92 (161)
T 4h7y_A           16 WLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAI--QEPDDARDYFQMARANCKK   92 (161)
T ss_dssp             HHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHH--HCGGGCHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHh--cCHHHHHHHHHHHHHHhHH
Confidence            33333444444777      8888999999999986431    23567776664 4677  8999999999999999889


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213          118 YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA  156 (429)
Q Consensus       118 ~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~  156 (429)
                      +++.|...|.--...|+...|...+.+|+.+.|...+.+
T Consensus        93 FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           93 FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            999999999999999999999999999999999876543

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.84  E-value=0.059  Score=46.74  Aligned_cols=79  Identities=10%  Similarity=-0.065  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           46 QELKEEGNKLFQKRDH---GGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdy---eeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.-++.+-.+.+..+.   ..++..++..++..|..   +--+++.+|..|.++  |+|.+|+..++.+|+++|+|..|.
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~---~Rd~LYyLAvg~ykl--gdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR---RRECLYYLTIGCYKL--GEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHH--TCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch---hHHHHHHHHHHHHHh--hhHHHHHHHHHHHHhhCCCCHHHH
Confidence            3455666677776655   46899999999877632   235788899999999  999999999999999999999987


Q ss_pred             HHHHHHH
Q 014213          123 LKRARCY  129 (429)
Q Consensus       123 ~~rA~ay  129 (429)
                      -.+..+-
T Consensus       116 ~Lk~~Ie  122 (134)
T 3o48_A          116 ALKSMVE  122 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.41  E-value=0.052  Score=48.82  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCCc------------------cHHHHHHHHHHHHHHcCCCCH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLL---PRNHI------------------DVSYLRSNMAACYMQMGLSEY  101 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~---P~~~~------------------~~a~l~~nrA~~y~kl~~g~y  101 (429)
                      ..++.+.-.|+.+|..++|..|...|.+||.+.   +++..                  .-.-+.+.+|.||+++  +++
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l--~~~  138 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL--KQD  138 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHT--TCH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHH--CCH
Confidence            456778899999999999999999999997653   22221                  0124778899999999  999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 014213          102 PRAIHECNLALEVTPLYSKALLKRARCY  129 (429)
Q Consensus       102 ~eAi~~~~~ALeldP~~~kAl~~rA~ay  129 (429)
                      .+||..++.. -..-..++.-+.+|..|
T Consensus       139 ~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          139 KDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            9999886432 22234567666666655

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.37  E-value=0.1  Score=57.23  Aligned_cols=59  Identities=15%  Similarity=0.164  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV  145 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA  145 (429)
                      ++.--+.-++..  ++|+-|+..+.+|+.+.|.....|++++.||..+|+|+.||-.++-+
T Consensus       339 LL~~Qa~FLl~K--~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNR--GDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcc--CcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            444445545555  99999999999999999999999999999999999999999665543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.24  E-value=0.68  Score=47.76  Aligned_cols=117  Identities=9%  Similarity=-0.073  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccH------------------------------------HHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDV------------------------------------SYLRSNM   89 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~------------------------------------a~l~~nr   89 (429)
                      ..|..-+..+...|+.+.|...|++|+.. |.+....                                    ..+|...
T Consensus       214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y  292 (493)
T 2uy1_A          214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH  292 (493)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence            34667788888899999999999999999 9875310                                    0112222


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 014213           90 AACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALN-RLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL  166 (429)
Q Consensus        90 A~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG-~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l  166 (429)
                      +..+.+.  +..+.|...|.+| ...+.....|...|..-..++ +++.|...|+.+++.-|+++..+.........+
T Consensus       293 ~~~~~r~--~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~  367 (493)
T 2uy1_A          293 LNYVLKK--RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI  367 (493)
T ss_dssp             HHHHHHH--HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHc--CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            2222234  5677788888888 333334556666665555555 588888888888888888776655444433333

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.96  E-value=0.47  Score=45.80  Aligned_cols=63  Identities=16%  Similarity=0.152  Sum_probs=52.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           53 NKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        53 n~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      ..+++.|+.++|+......|+..|.|...+    ..+...+.-.  |+|++|...++.+.+++|.....
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R----~~LfqLLcv~--G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLR----SSFIELLCID--GDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHH----HHHHHHHHHH--TCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHH----HHHHHHHHhc--CCHHHHHHHHHHHHHhCchhhHH
Confidence            467899999999999999999999998644    4444444445  99999999999999999998664

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.61  E-value=0.38  Score=50.26  Aligned_cols=80  Identities=6%  Similarity=-0.122  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      ++.++|......  ..+..|..+|.+|+.+.|.+..+|..+|......|+.-+|+-+|-++|......+.+..++..+..
T Consensus       154 ~l~~LGDL~RY~--~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYR--NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHH--HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            444556555555  678999999999999999999999999999999999999999999999988889999999998877


Q ss_pred             HH
Q 014213          165 EL  166 (429)
Q Consensus       165 ~l  166 (429)
                      ..
T Consensus       232 ~~  233 (497)
T 1ya0_A          232 KA  233 (497)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.09  E-value=1.3  Score=44.75  Aligned_cols=97  Identities=13%  Similarity=0.026  Sum_probs=75.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CCCH--HHH
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT---PLYS--KAL  122 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld---P~~~--kAl  122 (429)
                      ..|..|+..|+|.+|+..+.+.++....  +.....-++......|+.+  +++.++...++.|....   +.++  .+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~--~n~~k~k~~l~~a~~~~~ai~~~p~i~a~  181 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL--SNLPKARAALTSARTTANAIYCPPKVQGA  181 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence            4799999999999999999999886554  2223445677788889999  99999999999987653   2233  333


Q ss_pred             --HHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 014213          123 --LKRARCYE-ALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       123 --~~rA~ay~-~LG~~deAl~~~~kAL~l  148 (429)
                        ..-|..+. ..++|..|..+|-.++.-
T Consensus       182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          182 LDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence              33478888 799999999999998743

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.02  E-value=0.22  Score=54.73  Aligned_cols=57  Identities=25%  Similarity=0.242  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECN  109 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~  109 (429)
                      -|..++..+..+|+|+-|+.+..+|+...|.+..    .|..+|.||..+  |+|+.|+-.++
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~----tW~~La~vYi~l--~d~e~ALLtLN  395 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFE----SWYNLARCHIKK--EEYEKALFAIN  395 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH----HHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH----HHHHHHHHHHHh--ccHHHHHHHHh
Confidence            4666788889999999999999999999999885    999999999999  99999995443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.27  E-value=3.4  Score=42.66  Aligned_cols=106  Identities=9%  Similarity=0.020  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLL--PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTP-LYSKALLK  124 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~--P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP-~~~kAl~~  124 (429)
                      |...-..|.+.|++++|+..|++..+..  |+ .    ..|+.+-.+|.+.  |++++|...++...+..- -+...|..
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~----~tyn~lI~~~~~~--g~~~~A~~l~~~M~~~G~~Pd~~ty~~  180 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-L----RSYGPALFGFCRK--GDADKAYEVDAHMVESEVVPEEPELAA  180 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-H----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-c----ceehHHHHHHHHC--CCHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            4555678889999999999999987752  32 2    3677777888888  999999999999887542 25678888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNK--EPKNIMAAEIAER  161 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l--~P~n~~a~~~La~  161 (429)
                      +-.+|...|++++|++.|++.-..  .|+... ...+..
T Consensus       181 Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T-~~~l~~  218 (501)
T 4g26_A          181 LLKVSMDTKNADKVYKTLQRLRDLVRQVSKST-FDMIEE  218 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH-HHHHHH
T ss_pred             HHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH-HHHHHH
Confidence            999999999999999999987654  665444 344433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.64  E-value=0.88  Score=47.49  Aligned_cols=79  Identities=15%  Similarity=0.083  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      -+...|+...-...+..|..+|.+|+.+.|.+..    .|+.+|..+...  +++-+|+-.|.++|.....+..|.-++.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~----~~nqLavla~~~--~~~l~a~y~y~rsl~~~~Pf~~a~~nL~  227 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ----PYNQLAILASSK--GDHLTTIFYYCRSIAVKFPFPAASTNLQ  227 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH----HHHHHHHHHHHT--TCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc----hHHHHHHHHhcc--cccHHHHHHHHHHHhcCCCChhHHHHHH
Confidence            4678899999999999999999999999999985    999999999988  9999999999999998888999999888


Q ss_pred             HHHHH
Q 014213          127 RCYEA  131 (429)
Q Consensus       127 ~ay~~  131 (429)
                      ..+..
T Consensus       228 ~~f~~  232 (497)
T 1ya0_A          228 KALSK  232 (497)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.37  E-value=1  Score=45.74  Aligned_cols=99  Identities=10%  Similarity=-0.082  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC---CCCH---HH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT---PLYS---KA  121 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld---P~~~---kA  121 (429)
                      +..+|..|+..|+++.|+..|.++........ ....++.+...+++..  ++|..+...+.+|..+-   +++.   +.
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-~kid~~l~~irl~l~~--~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-AKIDVMLTIARLGFFY--NDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-SHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            55899999999999999999999998876544 3445666666777777  99999999999987652   3321   23


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213          122 LLKRARCYEALNRLDLAFRDVTTVLNKE  149 (429)
Q Consensus       122 l~~rA~ay~~LG~~deAl~~~~kAL~l~  149 (429)
                      ....|.++...++|..|...|..++.-.
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            3444777888999999999998887653

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=89.53  E-value=5  Score=36.55  Aligned_cols=95  Identities=16%  Similarity=0.080  Sum_probs=72.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--hC------------
Q 014213           50 EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALE--VT------------  115 (429)
Q Consensus        50 ~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe--ld------------  115 (429)
                      ..+..+|-.|.|..|+.....      .+.   .+..+.-+.||.++  .+|..|+...+..|+  ++            
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~------lNT---~Ts~YYk~LCy~kl--KdYkkA~~~le~il~~kvd~d~~~d~~~~~f  106 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHK------LNT---CTSKYYESLCYKKK--KDYKKAIKSLESILEGKVERDPDVDARIQEM  106 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT------CCB---HHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCSBCCCCCCHHHHTT
T ss_pred             hhhhhhhhcchHhHHHHHHHh------cch---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccccCccccccccee
Confidence            457888889999888876532      222   24455678999999  999999999999982  22            


Q ss_pred             ---CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 014213          116 ---PLYSK-ALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA  155 (429)
Q Consensus       116 ---P~~~k-Al~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a  155 (429)
                         |.+-. .+..+|..+..+|+.++|+.+|.+.....|--+.+
T Consensus       107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v  150 (242)
T 3kae_A          107 FVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV  150 (242)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred             eeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence               33433 45667999999999999999999999998865543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=89.44  E-value=3.2  Score=42.66  Aligned_cols=111  Identities=7%  Similarity=-0.210  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      ..|..-+..+.+.++.+.|...|.+|  ..|...   ..+|...|..-..+  + +++.|...|+.+++..|+.+..+..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~~---~~v~i~~A~lE~~~--~~d~~~ar~ife~al~~~~~~~~~~~~  359 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL--GNEGVG---PHVFIYCAFIEYYA--TGSRATPYNIFSSGLLKHPDSTLLKEE  359 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCCC---HHHHHHHHHHHHHH--HCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCCC---hHHHHHHHHHHHHH--CCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence            34555566666677899999999999  445422   23555556555555  4 6999999999999999999888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      .+.-...+|+.+.|...|+++    +.....+..........|
T Consensus       360 yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G  398 (493)
T 2uy1_A          360 FFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVG  398 (493)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence            888888999999999999987    344555555555544443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=87.33  E-value=6.3  Score=40.64  Aligned_cols=101  Identities=8%  Similarity=-0.019  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHHHHhC--CCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Q 014213           60 DHGGALLKYEKALKLL--PRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVT-PLYSKALLKRARCYEALNRLD  136 (429)
Q Consensus        60 dyeeAl~~Y~kALel~--P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeld-P~~~kAl~~rA~ay~~LG~~d  136 (429)
                      +.+.|+..|++.....  |+ .    ..|+.+-.+|.+.  |++++|+..+++..+.. .-+...|..+-.+|...|+++
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd-~----~tyn~lI~~~~~~--g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~  157 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPN-E----ATFTNGARLAVAK--DDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAD  157 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCC-H----HHHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCCC-H----HHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHH
Confidence            4688888998877643  32 2    4778888899999  99999999999887753 236778888889999999999


Q ss_pred             HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHh
Q 014213          137 LAFRDVTTVLNK--EPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       137 eAl~~~~kAL~l--~P~n~~a~~~La~l~~~l~e  168 (429)
                      +|+..|+.....  .|+. ..+..+-.++...++
T Consensus       158 ~A~~l~~~M~~~G~~Pd~-~ty~~Li~~~~~~g~  190 (501)
T 4g26_A          158 KAYEVDAHMVESEVVPEE-PELAALLKVSMDTKN  190 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCH-HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhcCCCCCH-HHHHHHHHHHhhCCC
Confidence            999999998865  5544 444444444444443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.33  E-value=3.2  Score=39.93  Aligned_cols=61  Identities=10%  Similarity=0.003  Sum_probs=56.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIA  159 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~L  159 (429)
                      |+..+|+..+...++.+|.+...-..+.+.|+-.|+|+.|+.-++-+.+++|........+
T Consensus        11 g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A           11 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999876654443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.08  E-value=2.4  Score=42.34  Aligned_cols=62  Identities=8%  Similarity=0.015  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLAL  112 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~AL  112 (429)
                      ...+...+..++..|+|.+|+..+..++..+|-+..    +|..+..+|...  |+..+|+..|+++-
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~----~~~~lm~al~~~--Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP----LWTQLITAYYLS--DRQSDALGAYRRVK  232 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHTT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence            344556778889999999999999999999998874    888888999999  99999999988763

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.76  E-value=17  Score=36.85  Aligned_cols=104  Identities=7%  Similarity=-0.112  Sum_probs=76.2

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---hCCC
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQMGLSEYPRAIHECNLALE---VTPL  117 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALe---ldP~  117 (429)
                      .+|.-....+..++..|+|.+|...+.....-.-....  ...-++......|+..  ++|.+|...++++..   -.+.
T Consensus       135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~--~d~~~a~~~~~ki~~~~~~~~~  212 (445)
T 4b4t_P          135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILK--GDYSQATVLSRKILKKTFKNPK  212 (445)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhhcccCC
Confidence            35556677899999999999999999887643322211  2344556666777777  999999999998742   2333


Q ss_pred             CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213          118 YS----KALLKRARCYEALNRLDLAFRDVTTVLNK  148 (429)
Q Consensus       118 ~~----kAl~~rA~ay~~LG~~deAl~~~~kAL~l  148 (429)
                      ++    ..+...|..+...++|.+|..+|..++..
T Consensus       213 ~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          213 YESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            33    34556688889999999999999999864

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=84.76  E-value=1.9  Score=34.02  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.3

Q ss_pred             HHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213           40 VFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL   75 (429)
Q Consensus        40 ~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~   75 (429)
                      .++..|..+..+|..+=+.|+|++|+.+|..||+..
T Consensus        14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l   49 (83)
T 2w2u_A           14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVL   49 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999988863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=84.50  E-value=10  Score=39.93  Aligned_cols=27  Identities=15%  Similarity=0.210  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKA   71 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kA   71 (429)
                      ...|++.|..+.+.++++.|..+|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            345788888888888888888888875

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=83.48  E-value=1.9  Score=33.85  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=30.6

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKL   74 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel   74 (429)
                      ++..|..+..+|..+=+.|+|++|+.+|..||+.
T Consensus         7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A            7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            6788899999999999999999999999988875

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=80.42  E-value=2.8  Score=33.63  Aligned_cols=35  Identities=14%  Similarity=0.143  Sum_probs=31.0

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL   75 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~   75 (429)
                      ++..|..+...|..+=..|+|++|+.+|..||++.
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l   45 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDML   45 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            56788889999999999999999999999988863

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=80.05  E-value=6  Score=41.71  Aligned_cols=26  Identities=15%  Similarity=0.096  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMGLSEYPRAIHECNLA  111 (429)
Q Consensus        84 ~l~~nrA~~y~kl~~g~y~eAi~~~~~A  111 (429)
                      ..|.++|..+++.  ++++.|+..|.++
T Consensus       682 ~~W~~la~~al~~--~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQR--FNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHc--CCHHHHHHHHHHc
Confidence            4888999999998  9999999988875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	429
d1ip9a_	85	d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker'	2e-14
d2bkfa1	85	d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NB	8e-12
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	7e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	9e-08
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-07
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	3e-07
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	6e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	7e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-06
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-05
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-05
d1wmha_	83	d.15.2.2 (A:) Protein kinase C, iota type {Human (	1e-04
d2npta1	105	d.15.2.2 (A:4-108) Mitogen activated protein kinas	4e-04

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 252 ISSTEDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDL 311
           + S+        +K  + +DI    L  +++  +LR  I+ R        ++ +  +G  
Sbjct: 3   MGSSTSGLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRI-DTDNFKLQTKLFDGSG 61

Query: 312 VTITTDEELRWAEASAEMQGSVRLFVVGV 340
             I TD ++        +Q  +++ V  +
Sbjct: 62  EEIKTDSQVSNI-----IQAKLKISVHDI 85

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 8e-12
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)

Query: 259 EPKKTVKLVFGEDIRVAQL--PLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITT 316
           EP+ T+ + F  +I+   +  P N++   +  ++   F     + IKY DEE + V+I +
Sbjct: 2   EPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-TIQIKYLDEENEEVSINS 60

Query: 317 DEELRWAEASAEMQGSV-RLFVV 338
             E   A   A  QG+  ++ V 
Sbjct: 61  QGEYEEALKMAVKQGNQLQMQVH 83

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 4e-11
 Identities = 24/188 (12%), Positives = 65/188 (34%), Gaps = 7/188 (3%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           +QELKE+GN+LF  R +  A   Y +A+   P   +  +                   R 
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 105 IHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMA-AEIAERVK 163
             E +          KA     +C   +   D A  ++    +   +  +   +      
Sbjct: 64  ALELD------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117

Query: 164 KELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVKEKTKKKKKSNKVEQKKTGVKVEEKE 223
           +  +K+     +         +   +T +     + + ++ +++++  +    ++ ++  
Sbjct: 118 RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQAC 177

Query: 224 VDEKIEDK 231
           ++ K +  
Sbjct: 178 IEAKHDKY 185

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 48  LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHE 107
             E  ++ +Q  D   A     +  +  P N    + +   +++ + Q       R+ H 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDN----TGVLLLLSSIHFQCR--RLDRSAHF 55

Query: 108 CNLALEVTPLYSKALLKRARCY 129
             LA++  PL ++A       Y
Sbjct: 56  STLAIKQNPLLAEAYSNLGNVY 77

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 8/157 (5%)

Query: 32  KSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAA 91
            +Y +   +    +          +++     A+  Y +A++L P           N+A 
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF----PDAYCNLAN 279

Query: 92  CYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPK 151
              + G      A    N AL + P ++ +L   A        ++ A R     L   P+
Sbjct: 280 ALKEKG--SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337

Query: 152 NIMAAEIAERVKKELEK--RGLRVNDTVIELPPEYVE 186
              A      V ++  K    L      I + P + +
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 88  NMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLN 147
            +A    Q G  ++  A   C       P  +  LL  +  +    RLD +    T  + 
Sbjct: 4   ELAHREYQAG--DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 148 KEPKNIMA 155
           + P    A
Sbjct: 62  QNPLLAEA 69

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 49.6 bits (117), Expect = 6e-08
 Identities = 32/148 (21%), Positives = 56/148 (37%), Gaps = 14/148 (9%)

Query: 33  SYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI------------ 80
            YD   E  +  + ++KEEGN+ F+K +   A++KY++AL                    
Sbjct: 5   IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN 64

Query: 81  DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFR 140
                  N+A CY +        AI   +  L++     KAL K          L+ A  
Sbjct: 65  IEISCNLNLATCYNKNKDYPK--AIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 122

Query: 141 DVTTVLNKEPKNIMAAEIAERVKKELEK 168
           ++    +  P N+      E    +L++
Sbjct: 123 NLYKAASLNPNNLDIRNSYELCVNKLKE 150

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 7e-08
 Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 8/126 (6%)

Query: 45  SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRA 104
           ++ELK + N  F+ +D       YE A+K   +                +    +E    
Sbjct: 10  AEELKTQANDYFKAKD-------YENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGY 62

Query: 105 IHECNL-ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVK 163
                  A+E+   Y K   +RA    AL +   A RD  TV+  +P +  A    +   
Sbjct: 63  ALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN 122

Query: 164 KELEKR 169
           K ++++
Sbjct: 123 KIVKQK 128

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 49.6 bits (117), Expect = 9e-08
 Identities = 29/148 (19%), Positives = 57/148 (38%), Gaps = 13/148 (8%)

Query: 33  SYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN-----------HID 81
           S++ DT+  +  +  +KE+G   F+   +  A+++Y K +  L                 
Sbjct: 3   SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESF 62

Query: 82  VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRD 141
           +     N+A CY+++          +  L L+      K L +R      +N  + A  D
Sbjct: 63  LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA--NEKGLYRRGEAQLLMNEFESAKGD 120

Query: 142 VTTVLNKEPKNIMAAEIAERVKKELEKR 169
              VL   P+N  A       +K+ ++ 
Sbjct: 121 FEKVLEVNPQNKAARLQIFMCQKKAKEH 148

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 2e-07
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 3/122 (2%)

Query: 47  ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106
           + KE GN  ++K+D   AL  Y+KA +L P N   ++   +            E      
Sbjct: 6   KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65

Query: 107 ECNL-ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEI--AERVK 163
           E      E     +KA  +    Y    +   A       L +     +  +   AE++ 
Sbjct: 66  EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKIL 125

Query: 164 KE 165
           KE
Sbjct: 126 KE 127

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 3e-07
 Identities = 30/119 (25%), Positives = 42/119 (35%), Gaps = 6/119 (5%)

Query: 46  QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAI 105
            ELKE+GNK     +   AL  Y +A+KL P NH+  S   +  A         E     
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK 164
            +                 +A   E LNR + A R     L  E  N    E  + ++ 
Sbjct: 64  VDLKPDWGKGYSR------KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 46.7 bits (109), Expect = 6e-07
 Identities = 15/145 (10%), Positives = 42/145 (28%), Gaps = 17/145 (11%)

Query: 42  IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLR--------SNMAACY 93
           +  +     +  +     ++  A     +A+++      + ++          + +A   
Sbjct: 6   VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEAL 65

Query: 94  MQMGLSEYPRAIHECNLAL---------EVTPLYSKALLKRARCYEALNRLDLAFRDVTT 144
             +   +      +  L           +   L+  A+  RA   + L R   A  +   
Sbjct: 66  AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 125

Query: 145 VLNKEPKNIMAAEIAERVKKELEKR 169
           V+    +        ER+ +    R
Sbjct: 126 VVEMIEERKGETPGKERMMEVAIDR 150

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 7e-07
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 14/146 (9%)

Query: 36  KDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRN------------HIDVS 83
           KD +  + +S++LK  GN  F+ ++   A+ KY K L+ +  +                 
Sbjct: 18  KDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVAL 77

Query: 84  YLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVT 143
               N+ AC ++M   +    +  C  ALE+ P  +KAL +RA+ ++ L   D A  D+ 
Sbjct: 78  SCVLNIGACKLKMSDWQGA--VDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLK 135

Query: 144 TVLNKEPKNIMAAEIAERVKKELEKR 169
                 P++        +VK++++ +
Sbjct: 136 KAQEIAPEDKAIQAELLKVKQKIKAQ 161

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 51  EGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNL 110
           +      +     AL    +A+K  P++    + LRS+        G  ++ RA  +   
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKD----ASLRSSFIELLCIDG--DFERADEQLMQ 55

Query: 111 ALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAA 156
           ++++ P Y     +     +A        +   T         +  
Sbjct: 56  SIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTK 101

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 33  SYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI----DVSYLRSN 88
           S++ ++E  +  S  +KE G   F++  +  ALL+Y+K +  L         +    ++ 
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 89  MAACYMQMGLS-----EYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVT 143
             A ++ + +       +  AI  CN ALE+     K L +R   + A+N  +LA  D  
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 144 TVLNKEPKNIMAAEIAERVKKELEK 168
            VL   P N  A       ++ + +
Sbjct: 121 KVLQLYPNNKAAKTQLAVCQQRIRR 145

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 24/137 (17%), Positives = 44/137 (32%), Gaps = 6/137 (4%)

Query: 50  EEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECN 109
           EEG +  Q+ D   A+L +E A++  P++          +     +    +   AI    
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHME----AWQYLGTTQAENE--QELLAISALR 77

Query: 110 LALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR 169
             LE+ P    AL+  A  +   +    A   +   L   P        AE         
Sbjct: 78  RCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLG 137

Query: 170 GLRVNDTVIELPPEYVE 186
             +     +     ++E
Sbjct: 138 PSKRILGSLLSDSLFLE 154

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 9/128 (7%)

Query: 47  ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIH 106
            L  EG     K+D  GAL  +        R          N+   Y  +       A  
Sbjct: 7   SLWNEGVLAADKKDWKGALDAFSAVQDPHSRIC-------FNIGCMYTILK--NMTEAEK 57

Query: 107 ECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKEL 166
               ++      + A  +R   Y    + DLA +D+   L +   N +       ++ +L
Sbjct: 58  AFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 117

Query: 167 EKRGLRVN 174
               +  N
Sbjct: 118 FACEVLYN 125

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 263 TVKLVFGEDIRVAQLPLNSSLLQLREVISD--RFPSCRAVLIKYRDEEGDLVTITTDEEL 320
            VK  +  DI +     + S   L   + D   F + +   +K+ DEEGD  T+++  EL
Sbjct: 3   RVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLEL 62

Query: 321 ----RWAEASAEMQGSVRLF 336
               R  E + + +  + +F
Sbjct: 63  EEAFRLYELNKDSELLIHVF 82

>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen activated protein kinase kinase 5, Map2k5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 276 QLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELR 321
                     + +VI    P       +Y DE+GD +T+ +DEE++
Sbjct: 31  HSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMK 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	429
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.84
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.83
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.83
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.78
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	99.77
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.75
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	99.7
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.64
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.56
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.54
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.52
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.51
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.47
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.47
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.47
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.44
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.42
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.41
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.33
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.33
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.26
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1pqsa_	77	Cell division control protein 24, CDC24, C-termina	99.25
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.23
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d1wmha_	83	Protein kinase C, iota type {Human (Homo sapiens)	99.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.18
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.15
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.05
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.96
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.96
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.94
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.92
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.9
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.76
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.73
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.69
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.67
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.6
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.59
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.56
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.53
d2npta1	105	Mitogen activated protein kinase kinase 5, Map2k5	98.51
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.42
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.39
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	98.28
d1oeyj_	105	Neutrophil cytosol factor 4 (p40phox component of	98.24
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.08
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.07
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.88
d2c60a1	80	Mitogen-activated protein kinase kinase kinase 3,	97.82
d2nptb1	82	Mitogen-activated protein kinase kinase kinase 2,	97.75
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.67
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	97.61
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.97
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.68
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	86.93
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	83.16
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	82.3

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.84  E-value=3.7e-20  Score=162.09  Aligned_cols=136  Identities=25%  Similarity=0.351  Sum_probs=123.3

Q ss_pred             CCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc------------HHHHHHHHHHHHHHcC
Q 014213           30 SPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID------------VSYLRSNMAACYMQMG   97 (429)
Q Consensus        30 ~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~------------~a~l~~nrA~~y~kl~   97 (429)
                      +.|.++.++.+  ..|..++++|+.+|+.|+|.+|+..|++||.+.+.....            ...+|+|+|.||+++ 
T Consensus         4 ~~~~~~~~e~~--~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l-   80 (153)
T d2fbna1           4 SIYDYTDEEKV--QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-   80 (153)
T ss_dssp             SGGGCCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             chhhCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHh-
Confidence            45666666655  999999999999999999999999999999988865431            246889999999999 


Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213           98 LSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus        98 ~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                       ++|++|+.+|++||+++|.++++|+++|.||..+|++++|+.+|++++.++|+|..+...+..+...+.+.
T Consensus        81 -~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          81 -KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             -TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             -cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence             99999999999999999999999999999999999999999999999999999999999999998888653

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-19  Score=162.02  Aligned_cols=136  Identities=25%  Similarity=0.335  Sum_probs=123.3

Q ss_pred             CCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHHcCCC
Q 014213           31 PKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-----------DVSYLRSNMAACYMQMGLS   99 (429)
Q Consensus        31 ~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-----------~~a~l~~nrA~~y~kl~~g   99 (429)
                      +|.|+.++.+  +.|..+++.|+.+|+.|+|++|+..|++||.+.|....           ....+|.|+|.||+++  |
T Consensus         1 ~~~~~~~ek~--~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~--~   76 (170)
T d1p5qa1           1 SWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL--Q   76 (170)
T ss_dssp             GGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT--T
T ss_pred             CCCCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhh--h
Confidence            3556666665  88999999999999999999999999999999987543           1356889999999999  9


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          100 EYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       100 ~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                      +|++|+..|++||.++|+++.+|+++|.||..+|+|++|+.+|++|+.++|+|+.+...+..+...+.+..
T Consensus        77 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          77 AFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999988876543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.3e-20  Score=152.85  Aligned_cols=115  Identities=31%  Similarity=0.428  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..|++.|+.+|..|+|++|+..|++||.++|.++.    +|.++|.||..+  |+|++|+..|++++.++|+++.+|+
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~   75 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV----LYSNRSAAYAKK--GDYQKAYEDGCKTVDLKPDWGKGYS   75 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh----hhhccccccccc--ccccccchhhhhHHHhccchhhHHH
Confidence            4678999999999999999999999999999999985    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      ++|.+|..+|++++|+.+|++++.++|+++.++..++++..
T Consensus        76 ~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          76 RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999998864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-19  Score=158.43  Aligned_cols=123  Identities=27%  Similarity=0.383  Sum_probs=116.7

Q ss_pred             HHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH
Q 014213           40 VFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS  119 (429)
Q Consensus        40 ~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~  119 (429)
                      ..+++|..|+.+||.+|+.|+|++|+..|++||+++|.+..    +|+++|.||+.+  |++++|+..|+++|+++|.++
T Consensus         5 ~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--~~~~~A~~~~~kal~~~p~~~   78 (159)
T d1a17a_           5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI----YYGNRSLAYLRT--ECYGYALGDATRAIELDKKYI   78 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhh----hhhhhHHHHHhc--cccchHHHHHHHHHHHcccch
Confidence            34699999999999999999999999999999999999885    999999999999  999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          120 KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       120 kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      .+|+++|.+|..+|++++|+.+|++++.++|++..++..+..+...+++
T Consensus        79 ~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          79 KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888766543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.82  E-value=1.5e-19  Score=160.15  Aligned_cols=136  Identities=23%  Similarity=0.312  Sum_probs=123.2

Q ss_pred             CCCCCCchhHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHHcCC
Q 014213           30 SPKSYDKDTEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-----------DVSYLRSNMAACYMQMGL   98 (429)
Q Consensus        30 ~~~~~d~d~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-----------~~a~l~~nrA~~y~kl~~   98 (429)
                      ++|.|+.++.+  +.|..+++.|+.+|..|+|.+|+..|.+||.+.+....           ....+|+|+|.||+++  
T Consensus         2 e~~~m~~~E~~--~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l--   77 (168)
T d1kt1a1           2 ESWEMDTKEKL--EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL--   77 (168)
T ss_dssp             CGGGSCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             CcccCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHh--
Confidence            45667666655  89999999999999999999999999999998876443           1367899999999999  


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213           99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                      ++|++|+.+|+++|.++|.+.++|+++|.||..+|+|++|+.+|.+++.++|+|+.+...+..+...+.+.
T Consensus        78 ~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          78 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999998877643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.8e-19  Score=158.71  Aligned_cols=103  Identities=28%  Similarity=0.411  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      |+.|+++|+.||+.|+|++|+..|++||.++|.++.    +|+|+|.||+++  |+|++|+.+|++||+++|+++.+|++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~----~~~~lg~~y~~~--~~~~~Ai~~~~~al~l~p~~~~a~~~   77 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV----YYTNRALCYLKM--QQPEQALADCRRALELDGQSVKAHFF   77 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHhHHHHHhhh--hhhhhhhHHHHHHHHhCCCcHHHHHH
Confidence            577999999999999999999999999999999885    999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                      +|.+|..+|+|++|+.+|++|+.++|++.
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999988654

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=2.3e-19  Score=143.91  Aligned_cols=79  Identities=16%  Similarity=0.216  Sum_probs=71.7

Q ss_pred             cCCCCceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEE
Q 014213          256 EDNEPKKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRL  335 (429)
Q Consensus       256 ~~~~~~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl  335 (429)
                      .....+++||++|++|+|++.||++++|.+|+++|+++|. .++|.|||+|+|||+|||+||+||++|++-     ..+|
T Consensus         7 ~~~~~~ikVKv~~~~D~~~~~l~~~it~~dL~~kI~~rf~-~~~~~lkY~Dedgd~v~i~sD~Dl~~ai~~-----~~kl   80 (85)
T d1ip9a_           7 TSGLKTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRID-TDNFKLQTKLFDGSGEEIKTDSQVSNIIQA-----KLKI   80 (85)
T ss_dssp             CCCCCCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHT-SSCEEEEECCSSSCCSCCCSHHHHHHHHHT-----TCCE
T ss_pred             CCCCCCEEEEEEECCcEEEEEeCCCCCHHHHHHHHHHHhC-CCceEEEEEcCCCCEEEEeCHHHHHHHHHh-----cCcE
Confidence            4567899999999999999999999999999999999995 678999999999999999999999999983     4777


Q ss_pred             EEEee
Q 014213          336 FVVGV  340 (429)
Q Consensus       336 ~v~e~  340 (429)
                      .|.+|
T Consensus        81 ~v~~~   85 (85)
T d1ip9a_          81 SVHDI   85 (85)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            77654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=1e-17  Score=147.85  Aligned_cols=131  Identities=26%  Similarity=0.430  Sum_probs=117.2

Q ss_pred             hHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC------------ccHHHHHHHHHHHHHHcCCCCHHHHH
Q 014213           38 TEVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNH------------IDVSYLRSNMAACYMQMGLSEYPRAI  105 (429)
Q Consensus        38 ~~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~------------~~~a~l~~nrA~~y~kl~~g~y~eAi  105 (429)
                      ....+..+..++..|+.+|..|+|.+|+..|++||.+.+...            +..+.++.|+|.||+++  |+|++|+
T Consensus        20 ~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--~~~~~Ai   97 (169)
T d1ihga1          20 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM--SDWQGAV   97 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhh--cccchhh
Confidence            344567889999999999999999999999999998765321            12356899999999999  9999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 014213          106 HECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRG  170 (429)
Q Consensus       106 ~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~  170 (429)
                      ..|++||+++|+++.+|+++|.+|..+|++++|+.+|++++.++|+|..+...+..+...+....
T Consensus        98 ~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1          98 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988876543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.4e-17  Score=136.66  Aligned_cols=119  Identities=25%  Similarity=0.307  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCH---
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYS---  119 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~---  119 (429)
                      +.|..+++.|+.+|..|+|++|+.+|++||+++|.+..    ++.|+|.||+++  |+|++|+.+|++||+++|.+.   
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~----~~~~~a~~~~~~--~~~~~A~~~~~~al~l~~~~~~~~   75 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT----YITNQAAVYFEK--GDYNKCRELCEKAIEVGRENREDY   75 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH----HHHhHHHHHHHc--CchHHHHHHHHHHHHhCcccHHHH
Confidence            46788999999999999999999999999999999874    999999999999  999999999999999998764   


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          120 ----KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       120 ----kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                          .+|+++|.++..++++++|+.+|++++..+|+ +.....+..+...+.+
T Consensus        76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lke  127 (128)
T d1elra_          76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE  127 (128)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhC
Confidence                57888889999999999999999999999874 6777777777766643

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.2e-17  Score=130.14  Aligned_cols=79  Identities=25%  Similarity=0.376  Sum_probs=71.2

Q ss_pred             CceeEEEEeCCceEEEEc--cCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccC-CcEEEE
Q 014213          260 PKKTVKLVFGEDIRVAQL--PLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQ-GSVRLF  336 (429)
Q Consensus       260 ~~~~vK~~~~~DiR~~~i--~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~-~~~rl~  336 (429)
                      ++++|||+|++|++||.|  |.+.+|.+|...|+.+|+ +..|.|||.|+|||+|+|+|++||++|+.++..+ +.+||.
T Consensus         3 p~vtvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~-l~~~~lkY~Ddd~e~v~l~~d~dl~E~~~~a~~~~~~irl~   81 (85)
T d2bkfa1           3 PQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFD-LNTIQIKYLDEENEEVSINSQGEYEEALKMAVKQGNQLQMQ   81 (85)
T ss_dssp             CCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHT-CSSEEEEEECTTSCEEEECSHHHHHHHHHHHHHTTTEEEEE
T ss_pred             ccEEEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcC-cccceEEEEcCCCCEEEEecHHHHHHHHHHHhcCCCEEEEE
Confidence            579999999999999876  577999999999999996 4679999999999999999999999999987555 469999


Q ss_pred             EEe
Q 014213          337 VVG  339 (429)
Q Consensus       337 v~e  339 (429)
                      |.+
T Consensus        82 v~d   84 (85)
T d2bkfa1          82 VHE   84 (85)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            986

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.64  E-value=1.9e-15  Score=138.20  Aligned_cols=120  Identities=19%  Similarity=0.169  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+..+|..|+..|+|++|+..|++||.++|+++.    +|+++|.+|+++  |+|++|+..|+++++++|+++.++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~----a~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~  108 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE----VFNYLGIYLTQA--GNFDAAYEAFDSVLELDPTYNYAH  108 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHH----HHhhhchHHHHH--HHHHHhhhhhhHHHHHHhhhhhhH
Confidence            45778999999999999999999999999999999985    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      +++|.+|..+|++++|+..|++++.++|++......+..+...+..
T Consensus       109 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_         109 LNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999887777766666543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.6e-15  Score=127.11  Aligned_cols=116  Identities=17%  Similarity=0.115  Sum_probs=104.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 014213           49 KEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG-LSEYPRAIHECNLALEVTPLY--SKALLKR  125 (429)
Q Consensus        49 k~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~-~g~y~eAi~~~~~ALeldP~~--~kAl~~r  125 (429)
                      -+..|.++..+++++|...|++||.++|.++.    +++|+|.|+++.+ ++++.+|+..+++++..+|..  ..+|+++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~----~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L   78 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKS----TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYL   78 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence            46788999999999999999999999999986    9999999998641 256778999999999999865  4599999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      |.+|..+|+|++|+.+|+++|.++|+|..++..+..+...+..
T Consensus        79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999887753

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.1e-14  Score=129.68  Aligned_cols=130  Identities=16%  Similarity=0.129  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..++++|..++..|+|+.|+..|.++   .|.++    .+|+|+|.||+.+  |+|++|+.+|++||+++|+++.+|
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~----~~~~nlG~~~~~~--g~~~~A~~~~~kAl~ldp~~~~a~   73 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAV---QDPHS----RICFNIGCMYTIL--KNMTEAEKAFTRSINRDKHLAVAY   73 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCH----HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCH----HHHHHHHHHHHHc--CCchhHHHHHHHHHHHhhhhhhhH
Confidence            45667889999999999999999999864   44444    4889999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHHHhhccccc--cccccCC
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKN----------------IMAAEIAERVKKELEKRGLRVN--DTVIELP  181 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n----------------~~a~~~La~l~~~l~e~~~a~~--e~~~~L~  181 (429)
                      +++|.+|..+|++++|+.+|++|+...|.+                ..++..++.++..+++...+..  ..+..+.
T Consensus        74 ~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999999999999999999999999986654                3566778888888877666666  3344444

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.54  E-value=8.1e-15  Score=127.50  Aligned_cols=108  Identities=14%  Similarity=0.177  Sum_probs=94.8

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHID--------VSYLRSNMAACYMQMGLSEYPRAIHECNLALEV  114 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~--------~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel  114 (429)
                      ..+..+...|+.+|..|+|++|+..|++||++.|..+..        .+.+|+|+|.||..+  |+|++|+.+|+++|.+
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~l--g~~~~A~~~~~~al~~   84 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL--RSFDEALHSADKALHY   84 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHc--CccchhhHhhhhhhhc
Confidence            445566777999999999999999999999999986541        367899999999999  9999999999999987


Q ss_pred             CC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213          115 TP-----------LYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       115 dP-----------~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                      .|           .+..+|+++|.+|..+|++++|+.+|++|+.+.|..
T Consensus        85 ~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          85 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence            54           245689999999999999999999999999997644

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-14  Score=139.08  Aligned_cols=140  Identities=13%  Similarity=0.058  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-EYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      +..+...|..+.+.+.+++|+..|++||+++|.+..    +|+++|.++..+  + ++++|+..++++++++|++..+|+
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~----a~~~r~~~l~~l--~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT----VWHFRRVLLKSL--QKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChH----HHHHHHHHHHHh--CcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            456778899999999999999999999999999985    999999999998  6 599999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcccccc--ccccCCCCCCCCCcccccch
Q 014213          124 KRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVND--TVIELPPEYVEPPVTSIAPK  195 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e--~~~~L~p~~~~P~~~~~~a~  195 (429)
                      ++|.++..+|++++|+.+|++++.++|++..++..++.++..++....+...  ++..++     |.....|..
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-----p~n~~a~~~  185 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-----VRNNSVWNQ  185 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-----TTCHHHHHH
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-----CccHHHHHH
Confidence            9999999999999999999999999999999999999999999988777774  344444     555555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.51  E-value=5.1e-14  Score=116.22  Aligned_cols=93  Identities=16%  Similarity=0.075  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      ..+.|..+++.|++.+|+..|+++|..+|.+..    +|.++|.+|.++  +++++|+..+++|++++|++..+|+.+|.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~la~   92 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREE----AWRSLGLTQAEN--EKDGLAIIALNHARMLDPKDIAVHAALAV   92 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccch----hhhhhhhhhhhh--hhHHHhhcccccccccccccccchHHHHH
Confidence            567899999999999999999999999999885    999999999999  99999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 014213          128 CYEALNRLDLAFRDVTTVL  146 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL  146 (429)
                      +|..+|++++|++.++++|
T Consensus        93 ~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          93 SHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-13  Score=129.63  Aligned_cols=146  Identities=16%  Similarity=0.101  Sum_probs=126.9

Q ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           43 GMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        43 ~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      ..+..+...|..++..|++++|+..|++|++++|.+..    ++.++|.+|..+  |++.+|+..++.++...|.+..++
T Consensus       235 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~  308 (388)
T d1w3ba_         235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD----AYCNLANALKEK--GSVAEAEDCYNTALRLCPTHADSL  308 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH----HHHHHHHHHHHH--SCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CCHHHHHHHHHhhhccCCccchhh
Confidence            34567888999999999999999999999999998875    889999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc--cccccCCCCCCCCCcccccchhhhh
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN--DTVIELPPEYVEPPVTSIAPKVVKE  199 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~--e~~~~L~p~~~~P~~~~~~a~v~k~  199 (429)
                      +.+|.+|..+|++++|+..|+++++++|+++.++..++.++..+++...|..  +++.+++     |..+..+..++..
T Consensus       309 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-----P~~~~a~~~lg~~  382 (388)
T d1w3ba_         309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-----PTFADAYSNMGNT  382 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-----TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988777766  4455554     4444455555543

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.5e-13  Score=129.11  Aligned_cols=145  Identities=21%  Similarity=0.203  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+...|..++..|+|++|+..|.+++.+.|....    .+.++|.+|+.+  |++++|+..|+++++++|+++.+++.
T Consensus       203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~  276 (388)
T d1w3ba_         203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV----VHGNLACVYYEQ--GLIDLAIDTYRRAIELQPHFPDAYCN  276 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            566888899999999999999999999998887764    788889999988  99999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCCCCCCCCCcccccchhhh
Q 014213          125 RARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELPPEYVEPPVTSIAPKVVK  198 (429)
Q Consensus       125 rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~p~~~~P~~~~~~a~v~k  198 (429)
                      +|.+|..+|++++|+..|++++...|.+..++..++.++..+++...+.......+.   ..|..+..+..++.
T Consensus       277 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~  347 (388)
T d1w3ba_         277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLAS  347 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999888888777766664433343   33444444444444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.47  E-value=4.6e-14  Score=122.15  Aligned_cols=111  Identities=15%  Similarity=0.105  Sum_probs=97.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           55 LFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--------LSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        55 lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--------~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      |-+.+.|++|+..|++||+++|+++.    +++++|.++..+.        .+.+++|+..|++||+++|+++.+|+++|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~----~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG   82 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDAD----NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchH----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHH
Confidence            44556799999999999999999996    9999999998540        04568999999999999999999999999


Q ss_pred             HHHHHcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 014213          127 RCYEALNR-----------LDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKR  169 (429)
Q Consensus       127 ~ay~~LG~-----------~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~  169 (429)
                      .+|..+|+           |+.|+.+|++|+.++|++..++..++.+.+.++..
T Consensus        83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            99988764           79999999999999999999999999988776543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.7e-13  Score=127.67  Aligned_cols=106  Identities=17%  Similarity=0.121  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+...|..++..|++++|+..|++++...|.+..    +|.++|.+|+.+  |++++|+..|+++++++|+++.+|+.+
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~l  246 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL----LWNKLGATLANG--NQSEEAVAAYRRALELQPGYIRSRYNL  246 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhccccccccccccccc----chhhhhhccccc--ccchhHHHHHHHHHHHhhccHHHHHHH
Confidence            44678899999999999999999999999998875    899999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE  157 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~  157 (429)
                      |.+|..+|++++|+..|++||+++|++..+..
T Consensus       247 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         247 GISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            99999999999999999999999998876543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.3e-13  Score=131.38  Aligned_cols=119  Identities=10%  Similarity=-0.028  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           44 MSQELKEEGNKLFQKR-DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~g-dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      .+..|..+|+.+...| ++++|+..|+++|+++|++..    +|.++|.++..+  |++++|+..++++++++|++..+|
T Consensus        76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~----a~~~~~~~~~~l--~~~~eAl~~~~kal~~dp~n~~a~  149 (315)
T d2h6fa1          76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ----VWHHRRVLVEWL--RDPSQELEFIADILNQDAKNYHAW  149 (315)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--TCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhh----HHHHHhHHHHhh--ccHHHHHHHHhhhhhhhhcchHHH
Confidence            3456789999999876 599999999999999999985    999999999999  999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 014213          123 LKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEK  168 (429)
Q Consensus       123 ~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e  168 (429)
                      +++|.++..+|++++|+.+|++++.++|++..++..++.+...++.
T Consensus       150 ~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~  195 (315)
T d2h6fa1         150 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  195 (315)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999999988776653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.6e-12  Score=117.01  Aligned_cols=101  Identities=13%  Similarity=0.032  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-------
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY-------  118 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~-------  118 (429)
                      ..+.+.|..++..|+|++|+..|++||+++|++..    +|+++|.||+++  |+|++|+.+|++|+...+.+       
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~----a~~~~g~~~~~~--g~~~~A~~~~~kAl~~~~~n~~~~~~~  110 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV----AYFQRGMLYYQT--EKYDLAIKDLKEALIQLRGNQLIDYKI  110 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHTTTTCSEEECGG
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhh----hHHHHHHHHHhh--ccHHHHHHHHHHHHHhCccCchHHHHH
Confidence            45889999999999999999999999999999885    999999999999  99999999999999876542       


Q ss_pred             ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 014213          119 ---------SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKN  152 (429)
Q Consensus       119 ---------~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n  152 (429)
                               ..+++++|.+|..+|++++|++.|.+|+.+.|..
T Consensus       111 ~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         111 LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                     4789999999999999999999999999998874

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.2e-13  Score=123.08  Aligned_cols=116  Identities=15%  Similarity=0.069  Sum_probs=105.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 014213           59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLA  138 (429)
Q Consensus        59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deA  138 (429)
                      .+++.|+..+++++...+......+.+|+++|.+|+++  |+|++|+..|++||+++|+++.+|+++|.+|..+|++++|
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~--g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHh
Confidence            45678888999998876655556788999999999999  9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccc
Q 014213          139 FRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDT  176 (429)
Q Consensus       139 l~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~  176 (429)
                      +.+|++++.++|++..++..++.++..+++...+....
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~  128 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL  128 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999999999999999999999998777766633

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.4e-12  Score=118.03  Aligned_cols=101  Identities=21%  Similarity=0.160  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      ..++|..+++.|+|++|+..|+++|+.+|.+..    +|.++|.+|..+  |++++|+..|.++++++|++..+|+.+|.
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~lg~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~la~   95 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME----AWQYLGTTQAEN--EQELLAISALRRCLELKPDNQTALMALAV   95 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHc--CChHHHHHHHHhhhccccccccccccccc
Confidence            467899999999999999999999999999885    999999999999  99999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 014213          128 CYEALNRLDLAFRDVTTVLNKEPKNIM  154 (429)
Q Consensus       128 ay~~LG~~deAl~~~~kAL~l~P~n~~  154 (429)
                      +|..+|++++|+..+++++.+.|.+..
T Consensus        96 ~~~~~~~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_          96 SFTNESLQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred             cccccccccccccchhhHHHhccchHH
Confidence            999999999999999999999997543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.4e-12  Score=101.60  Aligned_cols=87  Identities=18%  Similarity=0.129  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI---DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~---~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      +..+++.|..+++.|+|.+|+..|++|+++.|.+..   ..+.++.|+|.||.++  |+|++|+..++++|+++|++..+
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~--g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQ--GDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhc--CChHHHHHHHHHHHHhCcCCHHH
Confidence            567899999999999999999999999999876533   4577899999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHcC
Q 014213          122 LLKRARCYEALN  133 (429)
Q Consensus       122 l~~rA~ay~~LG  133 (429)
                      +++++.....++
T Consensus        83 ~~Nl~~~~~~l~   94 (95)
T d1tjca_          83 NGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence            999887766543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=5.7e-12  Score=110.65  Aligned_cols=95  Identities=18%  Similarity=0.230  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      -+.+.|.+|++.  |+|++|+..|++||+++|.++.+|+++|.||..+|+|++|+.+|++|+.++|++..++..++.++.
T Consensus         6 ~l~~~Gn~~~~~--g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           6 ELKEQGNRLFVG--RKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            567899999999  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccccc--ccccCC
Q 014213          165 ELEKRGLRVND--TVIELP  181 (429)
Q Consensus       165 ~l~e~~~a~~e--~~~~L~  181 (429)
                      .+++...|...  ++..+.
T Consensus        84 ~l~~~~~A~~~~~~al~l~  102 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLA  102 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC
Confidence            99988777763  344444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-11  Score=102.30  Aligned_cols=94  Identities=10%  Similarity=0.045  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213           86 RSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus        86 ~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      +.+.|..++..  |+|++|+..|+++|.++|.++.+|+.+|.||..+|++++|+.+|++++.++|+++.++..++.++..
T Consensus         6 l~~~g~~~~~~--g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           6 LKEKGNKALSV--GNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            46789999999  9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccccc--cccCC
Q 014213          166 LEKRGLRVNDT--VIELP  181 (429)
Q Consensus       166 l~e~~~a~~e~--~~~L~  181 (429)
                      +++...++...  +..+.
T Consensus        84 ~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHhC
Confidence            99888887744  44444

>d1pqsa_ d.15.2.2 (A:) Cell division control protein 24, CDC24, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Cell division control protein 24, CDC24, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=2.4e-12  Score=98.65  Aligned_cols=68  Identities=21%  Similarity=0.278  Sum_probs=57.6

Q ss_pred             CceEEEEccCCccHHHHHHHHHhhCCCCC------ceEEEEECCCCCEEEecChHHHHHHHHhhccC--CcEEEEE
Q 014213          270 EDIRVAQLPLNSSLLQLREVISDRFPSCR------AVLIKYRDEEGDLVTITTDEELRWAEASAEMQ--GSVRLFV  337 (429)
Q Consensus       270 ~DiR~~~i~~~~~~~~L~~~v~~kf~~~~------~~~iky~DedgDliti~~~~dl~~a~~~~~~~--~~~rl~v  337 (429)
                      .|+..+.|+.+++|.+|.++|..|...++      ..+|||+|||||+|+|.|+||.+||++.-+++  ..+.+||
T Consensus         1 sd~fTLvV~~~i~f~~L~~kI~~Kia~~~~~~~~~~~rlrY~DeDGD~V~i~sddd~~~a~~~~~e~~~~~L~iW~   76 (77)
T d1pqsa_           1 SEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEMLAENNEKFLNIRL   76 (77)
T ss_dssp             CCEEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHHHHHCCCEEEEEC
T ss_pred             CceEEEEEEcCcCHHHHHHHHHHHHHhccCCCCCccceEEEEcCCCCEEEEeccchHHHHHHHHHhcccceEEEEe
Confidence            47889999999999999999999995443      36999999999999999999999998876553  3356664

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=1.4e-10  Score=103.72  Aligned_cols=111  Identities=15%  Similarity=0.055  Sum_probs=99.2

Q ss_pred             HHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc------------------cHHHHHHHHHHHHHHcCCCC
Q 014213           39 EVFIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI------------------DVSYLRSNMAACYMQMGLSE  100 (429)
Q Consensus        39 ~~~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~------------------~~a~l~~nrA~~y~kl~~g~  100 (429)
                      ...+.....+...|+.++..|++++|+..|.+||.+.+.+..                  ....++.+++.+++.+  |+
T Consensus         5 ~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~--g~   82 (179)
T d2ff4a2           5 TCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIAC--GR   82 (179)
T ss_dssp             GBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHT--TC
T ss_pred             hccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC
Confidence            344577889999999999999999999999999999886532                  0245789999999999  99


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCC
Q 014213          101 YPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTV-------LNKEPK  151 (429)
Q Consensus       101 y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kA-------L~l~P~  151 (429)
                      |++|+.+|+++++++|.+..+|..++.+|..+|++.+|+..|+++       |.++|.
T Consensus        83 ~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             chHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999999999999998       556775

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=5.7e-11  Score=97.44  Aligned_cols=88  Identities=9%  Similarity=0.031  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKK  164 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~  164 (429)
                      .++++|.++++.  |++.+|+..+++++.++|+++.+|+.+|.+|..+|++++|+.+|++++.++|++..++..++.++.
T Consensus        18 ~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~   95 (112)
T d1hxia_          18 NPMEEGLSMLKL--ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   95 (112)
T ss_dssp             CHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--hhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHH
Confidence            457899999999  999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccccc
Q 014213          165 ELEKRGLRVN  174 (429)
Q Consensus       165 ~l~e~~~a~~  174 (429)
                      .+++...|..
T Consensus        96 ~~g~~~~A~~  105 (112)
T d1hxia_          96 NEHNANAALA  105 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HCCCHHHHHH
Confidence            9998777654

>d1wmha_ d.15.2.2 (A:) Protein kinase C, iota type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Protein kinase C, iota type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.6e-11  Score=92.29  Aligned_cols=76  Identities=26%  Similarity=0.317  Sum_probs=66.2

Q ss_pred             eeEEEEeCCceEEEEccCCccHHHHHHHHHhh--CCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccC--CcEEEEE
Q 014213          262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDR--FPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQ--GSVRLFV  337 (429)
Q Consensus       262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~k--f~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~--~~~rl~v  337 (429)
                      ++||++|++||-...++.+++|.+|.+.||+-  |+...+|+|||.|+|||=.||+|+.||..|+.+..-.  ..+-++|
T Consensus         2 iriK~~y~G~i~it~~~~~it~e~l~~evr~~C~f~~~q~fT~KWiDeEGDPCTISSQmEL~EA~RLye~n~dseL~iHV   81 (83)
T d1wmha_           2 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDSELLIHV   81 (83)
T ss_dssp             EEEEEEETTEEEEEEECTTCCHHHHHHHHHHHTTCCTTCCCEEEEECTTSCEEECCSHHHHHHHHHHHHHTTCSCEEEEE
T ss_pred             eEEEEEecCeEEEEecCCCccHHHHHHHHHHHhCCCcCCcEEEEEEcCCCCceeeecHHHHHHHHHHHHccCCcceEEEe
Confidence            68999999999999999999999999999985  5667789999999999999999999999999887332  2355544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=3e-11  Score=104.27  Aligned_cols=97  Identities=21%  Similarity=0.196  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      +.-+..+|..|++.  |+|++|+..|++|++++|++..+|+++|.||..+|++++|+.+|+++++++|++..++..++.+
T Consensus        10 a~~l~~~gn~~~~~--~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_          10 AEELKTQANDYFKA--KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            44566789999999  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccc--ccccCC
Q 014213          163 KKELEKRGLRVND--TVIELP  181 (429)
Q Consensus       163 ~~~l~e~~~a~~e--~~~~L~  181 (429)
                      +..+++...+...  ++..+.
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVK  108 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHHHHHHcC
Confidence            9999988877773  344444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.3e-10  Score=92.88  Aligned_cols=81  Identities=12%  Similarity=-0.030  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           85 LRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY-------SKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAE  157 (429)
Q Consensus        85 l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~-------~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~  157 (429)
                      -++++|..+++.  |+|.+|+.++++|+++.|.+       ..+|.++|.||..+|++++|+..|+++|.++|+++.++.
T Consensus         7 dc~~lG~~~~~~--g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           7 DSFELGKVAYTE--ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHC--CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            457899999999  99999999999999986543       678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 014213          158 IAERVKKELE  167 (429)
Q Consensus       158 ~La~l~~~l~  167 (429)
                      +++.++..|.
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9999888774

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=9.6e-11  Score=98.20  Aligned_cols=84  Identities=8%  Similarity=0.077  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 014213           83 SYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERV  162 (429)
Q Consensus        83 a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l  162 (429)
                      +..+-++|.+|+..  |+|++|+..|+++|+++|+++.+|+++|.||..+|+|++|+.+|++++.++|++..++..++.+
T Consensus         4 a~~~k~~G~~~~~~--~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           4 ALKEKELGNDAYKK--KDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            45677899999999  9999999999999999999999999999999999999999999999999999988777777766


Q ss_pred             HHHHHh
Q 014213          163 KKELEK  168 (429)
Q Consensus       163 ~~~l~e  168 (429)
                      +..++.
T Consensus        82 ~~~lg~   87 (128)
T d1elra_          82 YARIGN   87 (128)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.05  E-value=4.9e-10  Score=97.59  Aligned_cols=90  Identities=17%  Similarity=0.124  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+.++|..+++.|+|++|+..|++||+++|.+..    +|+++|.+|+.+  |+|++|+.+|++|++++|++..++.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~----a~~~~g~~~~~l--~~~~~A~~~~~~al~l~p~n~~~~~  149 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK----ALYRRAQGWQGL--KEYDQALADLKKAQEIAPEDKAIQA  149 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhh----HHHhHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4556788999999999999999999999999999885    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHH
Q 014213          124 KRARCYEALNRLDLAF  139 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl  139 (429)
                      .++.++..+..+.++.
T Consensus       150 ~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         150 ELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998887766653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.96  E-value=3e-09  Score=92.67  Aligned_cols=88  Identities=19%  Similarity=0.140  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+.++|..|+..|+|.+|+..|++||.++|.+..    +|+++|.||..+  |+|++|+.+|.+++.++|++..++.
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~----a~~~~~~~~~~l--~~~~~A~~~~~~al~l~P~n~~~~~  136 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK----GLYRRGEAQLLM--NEFESAKGDFEKVLEVNPQNKAARL  136 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHH----HHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            4456778999999999999999999999999999885    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHH
Q 014213          124 KRARCYEALNRLDL  137 (429)
Q Consensus       124 ~rA~ay~~LG~~de  137 (429)
                      .++.+...++.+.+
T Consensus       137 ~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         137 QIFMCQKKAKEHNE  150 (168)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHH
Confidence            99999888776654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3.3e-09  Score=92.87  Aligned_cols=90  Identities=16%  Similarity=0.082  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALL  123 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~  123 (429)
                      .+..+.+.|..|++.|+|++|+..|++||.++|.+..    +++++|.||..+  |+|++|+.+|++|++++|++..++.
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~----a~~~~g~~~~~~--g~~~~A~~~~~~al~l~P~n~~~~~  134 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK----GLSRRGEAHLAV--NDFELARADFQKVLQLYPNNKAAKT  134 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHT--TCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchh----hhHHHHHHHHHh--hhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3455778999999999999999999999999999885    999999999999  9999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHH
Q 014213          124 KRARCYEALNRLDLAF  139 (429)
Q Consensus       124 ~rA~ay~~LG~~deAl  139 (429)
                      .++.++..+..+....
T Consensus       135 ~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         135 QLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999998887766543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=1.3e-09  Score=103.72  Aligned_cols=119  Identities=10%  Similarity=-0.007  Sum_probs=105.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH
Q 014213           52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL-LKRARCYE  130 (429)
Q Consensus        52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl-~~rA~ay~  130 (429)
                      +..+...+++.+|+..|+++++.+|.+..    +|.++|.++..++.+++++|+..+.++++++|.+..++ +.+|.++.
T Consensus        80 ~~~~~~~~~~~~al~~~~~~l~~~pk~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~  155 (334)
T d1dcea1          80 KSPEESAALVKAELGFLESCLRVNPKSYG----TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ  155 (334)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCCcHH----HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHH
Confidence            33455566689999999999999999985    89999999999855679999999999999999999986 56789999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          131 ALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       131 ~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      ..+.++.|+..+++++.++|++..++..++.++..+++...+..
T Consensus       156 ~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         156 AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             hccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999999999999999999999999999987665544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.92  E-value=3e-09  Score=91.57  Aligned_cols=83  Identities=14%  Similarity=0.015  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLK  124 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~  124 (429)
                      +..+.++|..|++.|+|.+|+..|++||+++|.+..    +|+++|.||..+  |+|++|+.+|+++++++|++..+...
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~k----a~~~~g~~~~~l--g~~~~A~~~~~~al~l~P~n~~~~~~  140 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK----ALYKLGVANMYF--GFLEEAKENLYKAASLNPNNLDIRNS  140 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccccchhhh----hhHHhHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            345678999999999999999999999999999985    999999999999  99999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 014213          125 RARCYEALN  133 (429)
Q Consensus       125 rA~ay~~LG  133 (429)
                      ++.+...+.
T Consensus       141 l~~~~~kl~  149 (153)
T d2fbna1         141 YELCVNKLK  149 (153)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988877654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=9.6e-10  Score=112.10  Aligned_cols=114  Identities=5%  Similarity=-0.115  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           46 QELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+.+.|..+...++++.|+..|.+++.++|.      .++.++|.++..+  ++|++|+.+|.+|++++|++..+|+.+
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~LG~l~~~~--~~~~~A~~~y~~A~~l~P~~~~~~~~L  192 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ------HCLVHLGDIARYR--NQTSQAESYYRHAAQLVPSNGQPYNQL  192 (497)
T ss_dssp             ----------------------CCHHHHHHHH------HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTBSHHHHHH
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH------HHHHHHHHHHHHc--ccHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            34566788888888888899888888887763      4788999999999  999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 014213          126 ARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELE  167 (429)
Q Consensus       126 A~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~  167 (429)
                      |.+|...|++.+|+.+|.+||.+.|..+.++.++..+.....
T Consensus       193 g~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         193 AILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999887654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=3.5e-09  Score=99.52  Aligned_cols=132  Identities=9%  Similarity=-0.032  Sum_probs=109.3

Q ss_pred             HHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC
Q 014213           41 FIGMSQELKEEGNKLFQKRDHGGALLKYEKALKLLPR--NHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY  118 (429)
Q Consensus        41 ~l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~--~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~  118 (429)
                      +-+.+..|...|+.|...++|++|+.+|.+|+++...  +....+.+|.++|.||.++  |++++|+..+++++++.+..
T Consensus        33 ~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~--~~~~~A~~~~~~a~~~~~~~  110 (290)
T d1qqea_          33 FEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSG--GNSVNAVDSLENAIQIFTHR  110 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHhhHHhhhc
Confidence            4456778999999999999999999999999998543  2334578999999999999  99999999999999987654


Q ss_pred             ------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHhhccccc
Q 014213          119 ------SKALLKRARCYEA-LNRLDLAFRDVTTVLNKEPKN------IMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       119 ------~kAl~~rA~ay~~-LG~~deAl~~~~kAL~l~P~n------~~a~~~La~l~~~l~e~~~a~~  174 (429)
                            ..++.++|.+|.. +|++++|+..|++|+.+.+..      ..++..++.++..+++...|..
T Consensus       111 ~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~  179 (290)
T d1qqea_         111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (290)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence                  6688999999865 799999999999999884422      3457777888888887776666

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=2.7e-08  Score=93.29  Aligned_cols=107  Identities=14%  Similarity=0.075  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhCCC----
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI--DVSYLRSNMAACYMQ-MGLSEYPRAIHECNLALEVTPL----  117 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~--~~a~l~~nrA~~y~k-l~~g~y~eAi~~~~~ALeldP~----  117 (429)
                      +..|.+.|+.|.+.|++++|+..|.+++++.+....  ..+.++.++|.+|.. +  ++|++|+..+++|+++.+.    
T Consensus        77 a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~A~~~~~~A~~l~~~~~~~  154 (290)
T d1qqea_          77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDL--HDYAKAIDCYELAGEWYAQDQSV  154 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHH--HHHHHHHHHHHHHHHHHHhcCch
Confidence            456889999999999999999999999999876543  345678889988754 6  9999999999999987432    


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 014213          118 --YSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNI  153 (429)
Q Consensus       118 --~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~  153 (429)
                        ...++.++|.+|..+|+|++|+..|++++.+.|.+.
T Consensus       155 ~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence              356799999999999999999999999999988765

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=9.1e-08  Score=90.54  Aligned_cols=136  Identities=11%  Similarity=-0.031  Sum_probs=103.4

Q ss_pred             HHHcCC-HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 014213           55 LFQKRD-HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--------LSEYPRAIHECNLALEVTPLYSKALLKR  125 (429)
Q Consensus        55 lf~~gd-yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--------~g~y~eAi~~~~~ALeldP~~~kAl~~r  125 (429)
                      ..+.+. +++|+..|+++|+++|.+..    +|++++.++..+.        .+++.+|+..++.+++.+|++..+|+.+
T Consensus        38 ~~~~~~~~~~al~~~~~~l~~~P~~~~----a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~  113 (334)
T d1dcea1          38 KRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHR  113 (334)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhcccccHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHh
Confidence            334444 48999999999999999874    8888887776651        0238899999999999999999999999


Q ss_pred             HHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHhhccccc--cccccCCCCCCCCCcccccchhhhh
Q 014213          126 ARCYEALNR--LDLAFRDVTTVLNKEPKNIMAAE-IAERVKKELEKRGLRVN--DTVIELPPEYVEPPVTSIAPKVVKE  199 (429)
Q Consensus       126 A~ay~~LG~--~deAl~~~~kAL~l~P~n~~a~~-~La~l~~~l~e~~~a~~--e~~~~L~p~~~~P~~~~~~a~v~k~  199 (429)
                      |.++..+++  +++|+..+.+++.++|++..++. .++.+....+....+..  ..+..+     .|.....|-.++..
T Consensus       114 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~-----~p~~~~a~~~l~~~  187 (334)
T d1dcea1         114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-----NFSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-----TCCCHHHHHHHHHH
T ss_pred             hHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc-----CCCCHHHHHHHHHH
Confidence            999999885  89999999999999999998865 44556655555555554  334444     35555555544443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.69  E-value=1.7e-08  Score=86.36  Aligned_cols=90  Identities=19%  Similarity=0.187  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCC-----------CHH
Q 014213           44 MSQELKEEGNKLFQ----------KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLS-----------EYP  102 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~----------~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g-----------~y~  102 (429)
                      .+..+...|..++.          .+.+++|+..|++||+++|.+..    +|+|+|.+|..+  |           .|.
T Consensus        30 ~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~----a~~~lG~~y~~~--g~~~~~~~~~~~~~~  103 (145)
T d1zu2a1          30 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE----AVWCIGNAYTSF--AFLTPDETEAKHNFD  103 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHH--HHHCCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhH----HHhhHHHHHHHc--ccchhhHHHHHHhHH
Confidence            34567788888874          45568999999999999999985    999999999887  5           379


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014213          103 RAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAF  139 (429)
Q Consensus       103 eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl  139 (429)
                      +|+..|++|++++|++..++..++.+....+.+.++.
T Consensus       104 ~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~  140 (145)
T d1zu2a1         104 LATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987776666653

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=9.4e-08  Score=87.15  Aligned_cols=128  Identities=10%  Similarity=-0.002  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC----
Q 014213           44 MSQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHI-DVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLY----  118 (429)
Q Consensus        44 ~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~-~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~----  118 (429)
                      .++....+|..++..|++++|+..|++||.+.|.+.. ....++.++|.+|+.+  |+|++|+..+.+++++.+..    
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~--g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhhcchH
Confidence            4555666899999999999999999999999998653 3456889999999999  99999999999999876432    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHhhcccc
Q 014213          119 --SKALLKRARCYEALNRLDLAFRDVTTVLNKEPK--------NIMAAEIAERVKKELEKRGLRV  173 (429)
Q Consensus       119 --~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~--------n~~a~~~La~l~~~l~e~~~a~  173 (429)
                        ..+++.++.+|...|++..|+..+.+++.+.+.        ...+...++.++..+++...+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~  153 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE  153 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhH
Confidence              457899999999999999999999999986431        1234555666666665544443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.60  E-value=4.8e-09  Score=99.17  Aligned_cols=117  Identities=13%  Similarity=0.062  Sum_probs=95.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213           52 GNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEA  131 (429)
Q Consensus        52 Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~  131 (429)
                      +..+++.|++++|+..|+++|+.+|.+..    ++.+++.+|...  |+|++|+..++++++++|++..++..++.++..
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~----ar~~La~lL~~~--G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a   76 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDAS----LRSSFIELLCID--GDFERADEQLMQSIKLFPEYLPGASQLRHLVKA   76 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHH----HHHHHHHHHHHH--TCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            45688999999999999999999999986    999999999999  999999999999999999999999999999998


Q ss_pred             cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          132 LNRLDLAFRDVTTVLNK-EPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       132 LG~~deAl~~~~kAL~l-~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .+..+++...+.....+ +|.+...+...+.+....++...+..
T Consensus        77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~  120 (264)
T d1zbpa1          77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE  120 (264)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHH
Confidence            88888877665554433 45455555555566665555554444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.4e-08  Score=81.66  Aligned_cols=84  Identities=17%  Similarity=0.097  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHH
Q 014213           45 SQELKEEGNKLFQKR---DHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKA  121 (429)
Q Consensus        45 A~~lk~~Gn~lf~~g---dyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kA  121 (429)
                      +..+++.|..++..+   ++.+|+..|+++|..+|.+.  ...+++++|.||+++  |+|++|+..|+++|+++|++..|
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~--~~~~~~~Lg~~y~~~--g~~~~A~~~~~~aL~~~P~~~~A  108 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE--QRDYVFYLAVGNYRL--KEYEKALKYVRGLLQTEPQNNQA  108 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH--HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCch--HHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHhCcCCHHH
Confidence            456788999998755   45679999999999887542  234889999999999  99999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 014213          122 LLKRARCYEAL  132 (429)
Q Consensus       122 l~~rA~ay~~L  132 (429)
                      +..++.+...+
T Consensus       109 ~~l~~~I~~~~  119 (122)
T d1nzna_         109 KELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988877654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.56  E-value=9.8e-08  Score=87.00  Aligned_cols=104  Identities=17%  Similarity=-0.023  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------CCCC
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEV------TPLY  118 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALel------dP~~  118 (429)
                      +..+...|..+...|+++.|...|.+++...|.+.......+.++|.+|+.+  |++++|+..+++++..      .|..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~  290 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL--GEFEPAEIVLEELNENARSLRLMSDL  290 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHhhcccChHH
Confidence            3456778999999999999999999999999987766677889999999999  9999999999999854      3566


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 014213          119 SKALLKRARCYEALNRLDLAFRDVTTVLNKEP  150 (429)
Q Consensus       119 ~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P  150 (429)
                      ..+++.+|.+|..+|++++|+..|++|+.+.+
T Consensus       291 ~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         291 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            78999999999999999999999999999854

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.3e-08  Score=103.59  Aligned_cols=121  Identities=6%  Similarity=-0.131  Sum_probs=77.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 014213           53 NKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEAL  132 (429)
Q Consensus        53 n~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~L  132 (429)
                      ......+.|..|+..|.+++.++|.+..    .+.++|.++.+.  +++..|+..+..++.++|  ..+++++|.++..+
T Consensus        94 ~l~~a~~~Y~~ai~~l~~~~~l~~~~~~----~~~~lg~~~~~~--~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~  165 (497)
T d1ya0a1          94 FLEAASGFYTQLLQELCTVFNVDLPCRV----KSSQLGIISNKQ--THTSAIVKPQSSSCSYIC--QHCLVHLGDIARYR  165 (497)
T ss_dssp             HHHHHHHHHHHHHHHHTC-------------------------------------CCHHHHHHH--HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCChhhHH----HHHHhHHHHHhC--CCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHc
Confidence            3344556788888888888888888775    889999999999  999999999999998886  57999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccccccccCC
Q 014213          133 NRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVNDTVIELP  181 (429)
Q Consensus       133 G~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~e~~~~L~  181 (429)
                      |+|++|+.+|++|+.++|++..++..++.++...++...|+..+...|.
T Consensus       166 ~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999988888875555553

>d2npta1 d.15.2.2 (A:4-108) Mitogen activated protein kinase kinase 5, Map2k5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen activated protein kinase kinase 5, Map2k5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.5e-07  Score=74.71  Aligned_cols=70  Identities=19%  Similarity=0.275  Sum_probs=60.0

Q ss_pred             CCCCceeEEEEeCCceEEEEc-cCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHh
Q 014213          257 DNEPKKTVKLVFGEDIRVAQL-PLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEAS  326 (429)
Q Consensus       257 ~~~~~~~vK~~~~~DiR~~~i-~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~  326 (429)
                      .+.--++||..-++++-|.+- |..++|.++.+.|.+..|....-...|.|||||.||+-|||||+--+++
T Consensus        11 ~q~lVIRI~~~~~~~vDw~V~~~~~l~F~dvL~~i~q~~p~at~taFEYEDEdGDRITVRSDEEl~AMisy   81 (105)
T d2npta1          11 NQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSY   81 (105)
T ss_dssp             -CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTTSCCSEEEEECTTSCEEEECSHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCceeeeeecCCceeeHHHHHHHHHHhcccccccceeeccccCCEeEEccHHHHHHHHHH
Confidence            345578999998999999874 4789999999999999999988888999999999999999999866654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.42  E-value=1.2e-07  Score=81.01  Aligned_cols=89  Identities=17%  Similarity=0.127  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 014213           86 RSNMAACYMQMGLSEYPRAIHECNLALEVTPLY------------SKALLKRARCYEALNRLDLAFRDVTTVLNKEPK--  151 (429)
Q Consensus        86 ~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~------------~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~--  151 (429)
                      +...|..++..  |+|++|+..|++||++.|..            ..+|.++|.||..+|+|++|+.++++++.+.|.  
T Consensus        12 ~l~~g~~~~~~--g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          12 ALSDAQRQLVA--GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHH--TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            33447788888  99999999999999998764            357999999999999999999999999987542  


Q ss_pred             ---------CHHHHHHHHHHHHHHHhhccccccc
Q 014213          152 ---------NIMAAEIAERVKKELEKRGLRVNDT  176 (429)
Q Consensus       152 ---------n~~a~~~La~l~~~l~e~~~a~~e~  176 (429)
                               ...++..++.++..+++...++...
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~  123 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEF  123 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHH
Confidence                     2346777889999998887777743

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=1.6e-06  Score=72.65  Aligned_cols=85  Identities=15%  Similarity=0.099  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           84 YLRSNMAACYMQMG-LSEYPRAIHECNLALEVTPLYS-KALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus        84 ~l~~nrA~~y~kl~-~g~y~eAi~~~~~ALeldP~~~-kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      ...++.|.|+.+.+ ..+..+||..++.++..+|.+. .+||.+|.+|+.+|+|+.|+.+++++|+++|+|..++.....
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            46678888887641 1356789999999999999764 799999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 014213          162 VKKELEK  168 (429)
Q Consensus       162 l~~~l~e  168 (429)
                      +...+..
T Consensus       116 Ie~~~~k  122 (124)
T d2pqrb1         116 VEDKIQK  122 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9887753

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.7e-06  Score=65.23  Aligned_cols=76  Identities=30%  Similarity=0.420  Sum_probs=66.2

Q ss_pred             ceeEEEEeCCceEEEEccCC--ccHHHHHHHHHhhCC-CCCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEEE
Q 014213          261 KKTVKLVFGEDIRVAQLPLN--SSLLQLREVISDRFP-SCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFV  337 (429)
Q Consensus       261 ~~~vK~~~~~DiR~~~i~~~--~~~~~L~~~v~~kf~-~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~v  337 (429)
                      .+.||=-|+.+.||+.++.+  .+|.++...|...-. ..-+|.|-|.|.+|||..|..||-+..|+++|.+  -+||+|
T Consensus         2 ~veVKSKFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l~~~~f~i~Y~D~hgDLLPINNDdNf~kA~~sa~P--lLRi~i   79 (82)
T d1wmhb_           2 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLTNDDSLHRALASGPP--PLRLLV   79 (82)
T ss_dssp             EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECCSHHHHHHHTTSSSS--CEEEEE
T ss_pred             ceEeecccCceEEEeeeccccccCHHHHHHHHHHHcCCCCCcEEEEEecCCCCcccccCchHHHHHHHhcCC--ceeEeE
Confidence            35789999999999999876  589999999988874 3456999999999999999999999999998743  699998


Q ss_pred             E
Q 014213          338 V  338 (429)
Q Consensus       338 ~  338 (429)
                      +
T Consensus        80 Q   80 (82)
T d1wmhb_          80 Q   80 (82)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1oeyj_ d.15.2.2 (J:) Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.3e-06  Score=69.50  Aligned_cols=69  Identities=25%  Similarity=0.363  Sum_probs=56.0

Q ss_pred             CceEEEEccCC----ccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhhccCC------cEEEEEEe
Q 014213          270 EDIRVAQLPLN----SSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQG------SVRLFVVG  339 (429)
Q Consensus       270 ~DiR~~~i~~~----~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~------~~rl~v~e  339 (429)
                      .+||=|.|..+    .+|.+|+..||+.|+ ...+.+-|+|.|||||-|-||+|+.+-+.-++..+      +.+|+|+.
T Consensus        16 ~~~rDI~veedl~~~P~ykdLl~lmr~~f~-~~dIaLNYrD~eGDLIRllddeDv~LMv~~~~~~~s~~~~fPWeLhvT~   94 (105)
T d1oeyj_          16 STIKDIAVEEDLSSTPLLKDLLELTRREFQ-REDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQ   94 (105)
T ss_dssp             EEEEEEEECSCTTCCCCHHHHHHHHHHHHC-CSSEEEEEECTTSCEEECCSHHHHHHHHHHCCCCCCTTCBCSSCEEEEE
T ss_pred             ceeeeEEEccccccCccHHHHHHHHHHHhc-cceeEeeeecCCCCEEEEcchhhHHHHHHHhccCcccceecceeEEEee
Confidence            46777776555    699999999999996 66999999999999999999999987776653322      37788875

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.12  E-value=5.5e-06  Score=72.96  Aligned_cols=91  Identities=9%  Similarity=-0.070  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHcCCHHHHH
Q 014213           82 VSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPL----------------------YSKALLKRARCYEALNRLDLAF  139 (429)
Q Consensus        82 ~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~----------------------~~kAl~~rA~ay~~LG~~deAl  139 (429)
                      .+..+.+.|..+...  |++++|+..|.+||.+.+.                      +..++.+++.++..+|++++|+
T Consensus        10 ~f~~~~~~g~~~~~~--g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAA--GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            456788899999999  9999999999999998653                      2257899999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213          140 RDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus       140 ~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      .++++++.++|.+..++..+..++..+++...++.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999999999999999999999998877766

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.08  E-value=4.8e-06  Score=78.01  Aligned_cols=76  Identities=11%  Similarity=0.010  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhccccc
Q 014213           99 SEYPRAIHECNLALEVTPLYSKALLKRARCYEALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGLRVN  174 (429)
Q Consensus        99 g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~a~~  174 (429)
                      |++++|+..++++++.+|++..+++.+|.+|...|++++|+..|++++.++|++..+...+..+....+....+..
T Consensus        10 G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1          10 GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999888777666554443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=1.3e-05  Score=74.97  Aligned_cols=119  Identities=8%  Similarity=-0.118  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213           48 LKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRAR  127 (429)
Q Consensus        48 lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~  127 (429)
                      +...+..+...|+++.|...|+++|...|.+..   .+|...+....+.  ++++.|+..+.+++...|.....|...|.
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~---~~w~~~~~~~~~~--~~~~~ar~i~~~al~~~~~~~~~~~~~a~  176 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRA--EGIKSGRMIFKKAREDARTRHHVYVTAAL  176 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH---HHHHHHHHHHHHH--HCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            455677777889999999999999998887753   4677778888888  89999999999999999999888888887


Q ss_pred             HHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcc
Q 014213          128 CYE-ALNRLDLAFRDVTTVLNKEPKNIMAAEIAERVKKELEKRGL  171 (429)
Q Consensus       128 ay~-~LG~~deAl~~~~kAL~l~P~n~~a~~~La~l~~~l~e~~~  171 (429)
                      ... ..|+.+.|...|++++...|++...+.........+++...
T Consensus       177 ~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~  221 (308)
T d2onda1         177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN  221 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHH
Confidence            654 45789999999999999999999888888887766655443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=6.1e-05  Score=70.15  Aligned_cols=116  Identities=10%  Similarity=-0.083  Sum_probs=95.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 014213           47 ELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRA  126 (429)
Q Consensus        47 ~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA  126 (429)
                      .+...++...+.++++.|...|.+|+...|.+..    .+.+.|...... .++++.|...|++++...|+++..|...+
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~----~~~~~a~~e~~~-~~~~~~a~~i~e~~l~~~p~~~~~w~~y~  210 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH----VYVTAALMEYYC-SKDKSVAFKIFELGLKKYGDIPEYVLAYI  210 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH----HHHHHHHHHHHT-SCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHh-ccCHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            3567788888899999999999999999998875    677777654442 28999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHH
Q 014213          127 RCYEALNRLDLAFRDVTTVLNKEPKNI----MAAEIAERVKKELE  167 (429)
Q Consensus       127 ~ay~~LG~~deAl~~~~kAL~l~P~n~----~a~~~La~l~~~l~  167 (429)
                      ..+...|+++.|...|++|+...|.++    ..+..........|
T Consensus       211 ~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G  255 (308)
T d2onda1         211 DYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG  255 (308)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999887554    35555555444444

>d2c60a1 d.15.2.2 (A:43-122) Mitogen-activated protein kinase kinase kinase 3, MEKK 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 3, MEKK 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=9.8e-05  Score=55.80  Aligned_cols=75  Identities=11%  Similarity=0.198  Sum_probs=65.3

Q ss_pred             ceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh---ccCCcEEEEE
Q 014213          261 KKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA---EMQGSVRLFV  337 (429)
Q Consensus       261 ~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~---~~~~~~rl~v  337 (429)
                      -++||+-|.++-|.+++|.-+.|.+|..+|...|+  ..+.|.|.. ..=.|.|.+++||+-|++..   ..+.++||.+
T Consensus         2 dvRVKfE~~gEkRIi~f~RPv~~~dl~~kv~~afG--q~ldl~y~n-~El~IPl~~Q~DLDkAvellDrs~~~ksLrilL   78 (80)
T d2c60a1           2 DVRIKFEHNGERRIIAFSRPVKYEDVEHKVTTVFG--QPLDLHYMN-NELSILLKNQDDLDKAIDILDRSSSMKSLRILL   78 (80)
T ss_dssp             CEEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHS--SCCEEEEEC-SSCEEECCSHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred             CcEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeeEEec-CeEEEecccHHHHHHHHHHHccCcccceeEEEE
Confidence            37899999999999999999999999999999994  678899995 66789999999999997754   4466788876


Q ss_pred             E
Q 014213          338 V  338 (429)
Q Consensus       338 ~  338 (429)
                      .
T Consensus        79 ~   79 (80)
T d2c60a1          79 L   79 (80)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d2nptb1 d.15.2.2 (B:42-123) Mitogen-activated protein kinase kinase kinase 2, MEKK 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Mitogen-activated protein kinase kinase kinase 2, MEKK 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=0.00012  Score=55.45  Aligned_cols=74  Identities=22%  Similarity=0.293  Sum_probs=65.1

Q ss_pred             eeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCCCceEEEEECCCCCEEEecChHHHHHHHHhh---ccCCcEEEEEE
Q 014213          262 KTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSCRAVLIKYRDEEGDLVTITTDEELRWAEASA---EMQGSVRLFVV  338 (429)
Q Consensus       262 ~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~~~~~iky~DedgDliti~~~~dl~~a~~~~---~~~~~~rl~v~  338 (429)
                      ++||+-|..+-|.+++|.-+.|.+|..+|...|+  ..+.|.|.. ..=+|.|.+++||+-|++..   ..+.++||.+.
T Consensus         3 vRVKfE~~gEkRIi~f~RPv~~~dl~~kv~~afG--q~ldl~y~n-~EL~IPl~~Q~DLDkAvellDrs~~~ksLrilL~   79 (82)
T d2nptb1           3 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFG--QSMDLHYTN-NELVIPLTTQDDLDKAVELLDRSIHMKSLKILLV   79 (82)
T ss_dssp             EEEEEEETTEEEEEEECSSCCHHHHHHHHHHHHT--SCEEEEEEE-TTEEEECCCHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred             cEEEEEecCceEEEecCCCccHHHHHHHHHHHhC--CeeeEEEec-CeEEEecccHHHHHHHHHHHccCccccceEEEEE
Confidence            7899999999999999999999999999999994  678999995 56789999999999997654   44677998875

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.73  E-value=0.00033  Score=62.83  Aligned_cols=107  Identities=18%  Similarity=0.140  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           45 SQELKEEGNKLFQKRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--LSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        45 A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.++.+.|..+++.+||.+|+..|++|.+.  ++.    .++.++|.+|....  ..++..|+..+..+....  ++.+.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~----~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~   73 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   73 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCH----HHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchh
Confidence            467899999999999999999999999886  344    37889999998710  269999999999987554  78899


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213          123 LKRARCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus       123 ~~rA~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      +.+|..+..    ..+.+.|+..++.+....+  ..+...++.
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~  114 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGG  114 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcc
Confidence            999988875    4688999999999988754  444444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=0.00017  Score=60.10  Aligned_cols=80  Identities=10%  Similarity=-0.032  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 014213           46 QELKEEGNKLFQKRD---HGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKAL  122 (429)
Q Consensus        46 ~~lk~~Gn~lf~~gd---yeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl  122 (429)
                      +.-++-|-.+.+..+   ...|+..++.+++.+|.+.   ..+++++|.+|+++  |+|++|+..++++|+++|++..|.
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~---rd~lY~Lav~yykl--gdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR---RECLYYLTIGCYKL--GEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhH---HHHHHHHHHHHHHH--hhHHHHHHHHHHHHccCCCcHHHH
Confidence            345666767776544   5689999999999887553   25889999999999  999999999999999999999988


Q ss_pred             HHHHHHHH
Q 014213          123 LKRARCYE  130 (429)
Q Consensus       123 ~~rA~ay~  130 (429)
                      ..+-.+..
T Consensus       111 ~L~~~Ie~  118 (124)
T d2pqrb1         111 ALKSMVED  118 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76665544

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00012  Score=56.39  Aligned_cols=75  Identities=16%  Similarity=0.267  Sum_probs=60.2

Q ss_pred             ceeEEEEeCCceEEEEccCCccHHHHHHHHHhhCCCC-CceEEEEEC-CCCCEEEecChHHHHHHHHhhccCCcEEEEEE
Q 014213          261 KKTVKLVFGEDIRVAQLPLNSSLLQLREVISDRFPSC-RAVLIKYRD-EEGDLVTITTDEELRWAEASAEMQGSVRLFVV  338 (429)
Q Consensus       261 ~~~vK~~~~~DiR~~~i~~~~~~~~L~~~v~~kf~~~-~~~~iky~D-edgDliti~~~~dl~~a~~~~~~~~~~rl~v~  338 (429)
                      ..+|||||- =+..+.++...+|.+|++.|.+||+.. ...++.|+= ++|++|.|+ +++++-|-+.+. .|.|+||+.
T Consensus         5 ~~~vkVh~~-fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~~~~~~e~v~ls-ee~me~aWs~v~-~~~LtLwC~   81 (82)
T d1oeya_           5 AYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRDSNELVPLS-EDSMKDAWGQVK-NYCLTLWCE   81 (82)
T ss_dssp             CEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTTCSSCEECC-TTTHHHHHTTCB-TTEEEEEEC
T ss_pred             CEEEEEEEE-EEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEeccCCCCceeccc-hHHHHHHHHhcc-CCeEEEEeC
Confidence            568999984 566667899999999999999999643 447888872 377999996 888988888854 578999984

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.0022  Score=57.13  Aligned_cols=105  Identities=15%  Similarity=0.078  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCCCCHH
Q 014213           47 ELKEEGNKLFQ----KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--LSEYPRAIHECNLALEVTPLYSK  120 (429)
Q Consensus        47 ~lk~~Gn~lf~----~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--~g~y~eAi~~~~~ALeldP~~~k  120 (429)
                      .+...|..++.    ..+...++..+..+.+.  .+.    .+++++|.+|....  ..++++|+.+|.++.+..  ++.
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~--g~~----~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~  215 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDS----PGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGG  215 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHH
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhccccc--ccc----ccccchhhhcccCcccccchhhhhhhHhhhhccc--CHH
Confidence            45566777765    56677777777777764  344    37788888888711  168999999999988874  688


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 014213          121 ALLKRARCYEA----LNRLDLAFRDVTTVLNKEPKNIMAAEIAER  161 (429)
Q Consensus       121 Al~~rA~ay~~----LG~~deAl~~~~kAL~l~P~n~~a~~~La~  161 (429)
                      +++++|.+|..    ..++..|+.+|++|..+.  +..+...+..
T Consensus       216 a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~  258 (265)
T d1ouva_         216 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQ  258 (265)
T ss_dssp             HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHH
Confidence            99999998875    337888999999988874  4445444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.97  E-value=0.0055  Score=49.79  Aligned_cols=84  Identities=11%  Similarity=-0.039  Sum_probs=58.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q 014213           58 KRDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMG--LSEYPRAIHECNLALEVTPLYSKALLKRARCYEA----  131 (429)
Q Consensus        58 ~gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~--~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~----  131 (429)
                      ..++++|+..|.+|.+.  .++    .+.+++|.+|+.-.  +.++.+|+..|.++.+.  .++.+.+++|.+|..    
T Consensus        36 ~~~~~~a~~~~~~aa~~--g~~----~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv  107 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL--NSG----NGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGV  107 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT--TCH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred             ccCHHHHHHHHhhhhcc--cch----hhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCcc
Confidence            35677888888887765  333    36677777777511  25678888888887665  467788888887776    


Q ss_pred             cCCHHHHHHHHHHHHHhC
Q 014213          132 LNRLDLAFRDVTTVLNKE  149 (429)
Q Consensus       132 LG~~deAl~~~~kAL~l~  149 (429)
                      ..++.+|+.+|++|..+.
T Consensus       108 ~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         108 VKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CCCHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHCC
Confidence            457888888888877763

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.68  E-value=0.01  Score=48.03  Aligned_cols=93  Identities=14%  Similarity=0.004  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 014213           59 RDHGGALLKYEKALKLLPRNHIDVSYLRSNMAACYMQMGLSEYPRAIHECNLALEVTPLYSKALLKRARCYEA----LNR  134 (429)
Q Consensus        59 gdyeeAl~~Y~kALel~P~~~~~~a~l~~nrA~~y~kl~~g~y~eAi~~~~~ALeldP~~~kAl~~rA~ay~~----LG~  134 (429)
                      .|+++|+..|.+|.+..  +..    +..+++..  .  ..++++|+..+.++.+.  .++.+.+.+|..|..    ..+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~----a~~~l~~~--~--~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d   74 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMF----GCLSLVSN--S--QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD   74 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTT----HHHHHHTC--T--TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred             cCHHHHHHHHHHHHHCC--Chh----hhhhhccc--c--ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchh
Confidence            47899999999999874  333    45556532  2  37999999999999775  589999999999986    457


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 014213          135 LDLAFRDVTTVLNKEPKNIMAAEIAERVKKE  165 (429)
Q Consensus       135 ~deAl~~~~kAL~l~P~n~~a~~~La~l~~~  165 (429)
                      +..|+.+|+++...  +++.+...++.++..
T Consensus        75 ~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          75 LRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            99999999999886  578888888887653

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.93  E-value=0.55  Score=35.57  Aligned_cols=68  Identities=18%  Similarity=0.183  Sum_probs=52.4

Q ss_pred             EccCCccHHHHHHHHHhhCCC-CCceEEEEECCCCCEEEecChHHHHHHHHhhccCCcEEEEEEeeCCCCc
Q 014213          276 QLPLNSSLLQLREVISDRFPS-CRAVLIKYRDEEGDLVTITTDEELRWAEASAEMQGSVRLFVVGVNPLQD  345 (429)
Q Consensus       276 ~i~~~~~~~~L~~~v~~kf~~-~~~~~iky~DedgDliti~~~~dl~~a~~~~~~~~~~rl~v~e~~~~~e  345 (429)
                      .+|.++++.+|..+|...|+. ....+|.|+|.+++.++.-++++=  -+.......-.+|+|+..++.++
T Consensus        21 r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~--~L~~ygi~dG~~Ihvvd~~~~~~   89 (90)
T d1t0ya_          21 KYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAK--SLKDLGVRDGYRIHAVDVTGGNE   89 (90)
T ss_dssp             EEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSS--BTTTTTCCSSEEEEEEECTTCCC
T ss_pred             ecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCC--CHHHCCCCCCCEEEEEeCCCCCC
Confidence            389999999999999999963 466999999999999887777663  22222333349999999888664

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.16  E-value=0.96  Score=33.87  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=29.3

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL   75 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~   75 (429)
                      |..|..+-.+++.+.+.|.|++||+++.+|....
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl   38 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYL   38 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4788888899999999999999999998877643

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.30  E-value=1  Score=34.26  Aligned_cols=34  Identities=15%  Similarity=0.191  Sum_probs=30.2

Q ss_pred             HhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 014213           42 IGMSQELKEEGNKLFQKRDHGGALLKYEKALKLL   75 (429)
Q Consensus        42 l~~A~~lk~~Gn~lf~~gdyeeAl~~Y~kALel~   75 (429)
                      +..|..+..+|..+=..|+|++|+.+|.+||++.
T Consensus        12 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l   45 (93)
T d1wfda_          12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDML   45 (93)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4667889999999999999999999999998864